Citrus Sinensis ID: 026255

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKATRRGRRRRN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEEEEEEEccEEEEEEcccEEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccccHHHHHHcccccccccccccccccccEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEcccccccEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEcccccccccccccccccccccccccccccccccEEEEEEEccHHHHHHHHHHHHHHcccHHHHHHHHcHHHcHHHHHHcccc
Coil and Loop (DISEMBL)
MKIFNTSELRYLQDVlfpygqvssnvlgtydysmtmnskgrmmtynkipdILTGiilsnnrfdeaipasisnlkglqVLNLhnnnlqghipsclgnltnlesldlsnnkfsgripqqLVELTFLEFfnvsdnyltgpipqgkqfatfdntsfdansglcgrplskgcesgeaptnedhtegsaeslfsgasDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQkatrrgrrrrn
Flexible Loop (DISEMBL)
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWIleklgmqqkatrrgrrrrn
Low Complexity Region (SEG)
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKglqvlnlhnnnlqghIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGYagglvaglvlgFNFSTGIIGWILEKLGMQQKATrrgrrrrN
Disordered region (IsUnstruct)
****NTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD*********************************FSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLG**************
Disordered Region (DISOPRED)
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPL**************************ASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKAT*R******
Disordered Region (DISEMBL)
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS********************SLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLG**************
Disordered Region (DISPRO)
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGC*********************GASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQK**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKATRRGRRRRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.813	0.231	0.389	5e-28
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.502	0.110	0.454	6e-25
Q9SHI3	729	Receptor-like protein 2 O	no	no	0.506	0.167	0.458	5e-24
Q8LPB4	1021	Phytosulfokine receptor 1	N/A	no	0.539	0.127	0.465	7e-24
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.580	0.138	0.444	2e-22
Q9FN37	1036	Phytosulfokine receptor 2	no	no	0.518	0.120	0.436	9e-20
Q9LJF3	1164	Receptor-like protein kin	no	no	0.684	0.141	0.375	1e-19
C0LGP9	784	Probable leucine-rich rep	no	no	0.684	0.210	0.354	1e-19
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.659	0.139	0.353	2e-19
Q93Y06	669	Probable inactive recepto	no	no	0.663	0.239	0.365	4e-19

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/208 (38%), Positives = 111/208 (53%), Gaps = 12/208 (5%)

Query: 29  TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG 88
           +Y + M M +KG  M++ +I      I  S N+ +  IP S+  LK L+VLNL  N    
Sbjct: 637 SYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTS 696

Query: 89  HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 148
            IP  L NLT LE+LD+S NK SG+IPQ L  L+FL + N S N L GP+P+G QF    
Sbjct: 697 VIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQK 756

Query: 149 NTSFDANSGLCGRPLSKGCESGEA--PTN---EDHTEGSAESLFSGASDWKIILTGYAGG 203
            +SF  N GL G  L   C    A  PT+   ED +E   E++F    +W      Y  G
Sbjct: 757 CSSFLDNPGLYG--LEDICRDTGALNPTSQLPEDLSEAE-ENMF----NWVAAAIAYGPG 809

Query: 204 LVAGLVLGFNFSTGIIGWILEKLGMQQK 231
           ++ GLV+G  +++    W  EK G +Q 
Sbjct: 810 VLCGLVIGHFYTSHNHEWFTEKFGRKQH 837

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  114 bits (285), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/132 (45%), Positives = 75/132 (56%)

Query: 45  YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 104
           YN++  +   I +  N     IP  +  LK L +L L  NN  G IP  L NLTNLE LD
Sbjct: 576 YNQLSSLPPTIYIKRNNLTGTIPVEVGQLKVLHILELLGNNFSGSIPDELSNLTNLERLD 635

Query: 105 LSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS 164
           LSNN  SGRIP  L  L FL +FNV++N L+GPIP G QF TF   +F+ N  LCG  L 
Sbjct: 636 LSNNNLSGRIPWSLTGLHFLSYFNVANNTLSGPIPTGTQFDTFPKANFEGNPLLCGGVLL 695

Query: 165 KGCESGEAPTNE 176
             C+  +  T +
Sbjct: 696 TSCDPTQHSTTK 707

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI3|RLP2_ARATH Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1

 Score =  111 bits (277), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 74/133 (55%)

Query: 45  YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 104
           YNK+      I +  N    +IP  +  LK L +L L  NNL G IP  L NLTNLE LD
Sbjct: 571 YNKLYSFPPTIYIRRNNLTGSIPVEVGQLKVLHILELLGNNLSGSIPDELSNLTNLERLD 630

Query: 105 LSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS 164
           LSNN  SG IP  L  L FL +FNV++N L GPIP   QF TF   +F+ N  LCG  L 
Sbjct: 631 LSNNNLSGSIPWSLTNLNFLSYFNVANNSLEGPIPSEGQFDTFPKANFEGNPLLCGGVLL 690

Query: 165 KGCESGEAPTNED 177
             C+   A  N++
Sbjct: 691 TSCKPTRAKENDE 703

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPB4|PSKR1_DAUCA Phytosulfokine receptor 1 OS=Daucus carota GN=PSKR PE=1 SV=1

 Score =  110 bits (276), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 61/131 (46%), Positives = 82/131 (62%)

Query: 43  MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLES 102
           + YN+       I LS N  + +I     +L+ L VLNL NNNL G+IP+ L  +T+LE 
Sbjct: 526 LQYNQPSSFPPMIDLSYNSLNGSIWPEFGDLRQLHVLNLKNNNLSGNIPANLSGMTSLEV 585

Query: 103 LDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRP 162
           LDLS+N  SG IP  LV+L+FL  F+V+ N L+GPIP G QF TF N+SF+ N GLCG  
Sbjct: 586 LDLSHNNLSGNIPPSLVKLSFLSTFSVAYNKLSGPIPTGVQFQTFPNSSFEGNQGLCGEH 645

Query: 163 LSKGCESGEAP 173
            S    + ++P
Sbjct: 646 ASPCHITDQSP 656

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis and somatic embryogenesis.

Daucus carota (taxid: 4039)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 83/144 (57%), Gaps = 4/144 (2%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
           + + M  N   R + YN+I      I L +N     I     NLK L V +L  N L G 
Sbjct: 503 FPFFMKRNESARALQYNQIFGFPPTIELGHNNLSGPIWEEFGNLKKLHVFDLKWNALSGS 562

Query: 90  IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           IPS L  +T+LE+LDLSNN+ SG IP  L +L+FL  F+V+ N L+G IP G QF TF N
Sbjct: 563 IPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPN 622

Query: 150 TSFDANSGLCGR---PLSKGCESG 170
           +SF++N  LCG    P S+G ES 
Sbjct: 623 SSFESNH-LCGEHRFPCSEGTESA 645

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FN37|PSKR2_ARATH Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 71/126 (56%), Gaps = 1/126 (0%)

Query: 43  MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLES 102
           + YN++      I L+NNR +  I   I  LK L +L+L  NN  G IP  +  L NLE 
Sbjct: 529 LPYNQVSRFPPSIYLNNNRLNGTILPEIGRLKELHMLDLSRNNFTGTIPDSISGLDNLEV 588

Query: 103 LDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRP 162
           LDLS N   G IP     LTFL  F+V+ N LTG IP G QF +F ++SF+ N GLC R 
Sbjct: 589 LDLSYNHLYGSIPLSFQSLTFLSRFSVAYNRLTGAIPSGGQFYSFPHSSFEGNLGLC-RA 647

Query: 163 LSKGCE 168
           +   C+
Sbjct: 648 IDSPCD 653

Phytosulfokine receptor with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           LS N    +IP     +  LQVLNL +N L G IP   G L  +  LDLS+N   G +P 
Sbjct: 646 LSYNAVSGSIPLGYGAMGYLQVLNLGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPG 705

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNE 176
            L  L+FL   +VS+N LTGPIP G Q  TF  T +  NSGLCG PL   C SG  PT  
Sbjct: 706 SLGGLSFLSDLDVSNNNLTGPIPFGGQLTTFPLTRYANNSGLCGVPLPP-CSSGSRPT-R 763

Query: 177 DHTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKATRRG 236
            H     +S+              A G+ AG+V  F     +I  +     +Q+K  +R 
Sbjct: 764 SHAHPKKQSI--------------ATGMSAGIVFSFMCIVMLIMALYRARKVQKKEKQRE 809

Query: 237 R 237
           +
Sbjct: 810 K 810

Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP9|IMK3_ARATH Probable leucine-rich repeat receptor-like protein kinase IMK3 OS=Arabidopsis thaliana GN=IMK3 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 95/175 (54%), Gaps = 10/175 (5%)

Query: 58  SNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ 117
           S+NR    +P+ +S L  L+ +++  N++ GHIP  LGN+++L  LDLS NK +G IP  
Sbjct: 278 SHNRIRGTLPSELSKLTKLRKMDISGNSVSGHIPETLGNISSLIHLDLSQNKLTGEIPIS 337

Query: 118 LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNED 177
           + +L  L FFNVS N L+GP+P       F+++SF  NS LCG  +S  C +  +P+ E 
Sbjct: 338 ISDLESLNFFNVSYNNLSGPVPTLLS-QKFNSSSFVGNSLLCGYSVSTPCPTLPSPSPEK 396

Query: 178 HTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKA 232
             + S  +L    S   IIL      L+  L+L       ++  +L K   + KA
Sbjct: 397 ERKPSHRNL----STKDIILIASGALLIVMLIL-----VCVLCCLLRKKANETKA 442

Can phosphorylate AGL24.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           LS N+    IP  I  +  LQVL L +N L G IP  +G L NL   D S+N+  G+IP+
Sbjct: 618 LSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTIGQLKNLGVFDASDNRLQGQIPE 677

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNE 176
               L+FL   ++S+N LTGPIPQ  Q +T   T +  N GLCG PL + C++G      
Sbjct: 678 SFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYANNPGLCGVPLPE-CKNGNNQLPA 736

Query: 177 DHTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWIL 223
              EG      + A+ W       A  +V G+++       +I W +
Sbjct: 737 GTEEGKRAKHGTRAASW-------ANSIVLGVLISAASVCILIVWAI 776

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q93Y06|Y5720_ARATH Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 26/186 (13%)

Query: 45  YNKIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTN 99
           +  IPD+     L  + LS N+F  A P SI +L  L +L++ +NN  G IPS +  L  
Sbjct: 110 FGPIPDLSHLVNLKSLFLSRNQFSGAFPPSILSLHRLMILSISHNNFSGSIPSEINALDR 169

Query: 100 LESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC 159
           L SL+L  N+F+G +P   +  +FL  FNVS N LTG IP     + FD +SF +N GLC
Sbjct: 170 LTSLNLDFNRFNGTLPS--LNQSFLTSFNVSGNNLTGVIPVTPTLSRFDASSFRSNPGLC 227

Query: 160 GRPLSKGCE-------------SGEAPTNEDHTEGSAESLFSGASDWKIILTGYAGGLVA 206
           G  +++ C              S EAP  +     SA++   GA     ++T   G   +
Sbjct: 228 GEIINRACASRSPFFGSTNKTTSSEAPLGQ-----SAQAQNGGAVVIPPVVTKKKGK-ES 281

Query: 207 GLVLGF 212
           GLVLGF
Sbjct: 282 GLVLGF 287

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
359485824	973	PREDICTED: receptor-like protein 12-like	0.946	0.234	0.520	1e-54
359485822	993	PREDICTED: receptor-like protein 12-like	0.958	0.232	0.504	1e-52
297745044	813	unnamed protein product [Vitis vinifera]	0.937	0.277	0.495	3e-52
147866761	859	hypothetical protein VITISV_021527 [Viti	0.784	0.220	0.556	7e-52
359490156	886	PREDICTED: receptor-like protein 12-like	0.975	0.265	0.479	1e-51
225447578	1946	PREDICTED: uncharacterized protein LOC10	0.838	0.103	0.507	3e-49
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.780	0.109	0.591	3e-49
224140517	979	predicted protein [Populus trichocarpa]	0.788	0.194	0.540	7e-49
224140509	961	predicted protein [Populus trichocarpa]	0.850	0.213	0.516	2e-48
147794486	1924	hypothetical protein VITISV_000631 [Viti	0.838	0.104	0.502	4e-48

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  219 bits (557), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/240 (52%), Positives = 154/240 (64%), Gaps = 12/240 (5%)

Query: 6   TSELRYLQDVLFPYGQVSSNVLGT-YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDE 64
            S LRY+Q  + P   + +NV+ T Y YSMTM +KG    Y +I D    I  S N F  
Sbjct: 740 ASGLRYMQ--ISPMIDLKNNVMITGYMYSMTMTNKGMQRFYERILDTFMAIDFSGNNFKG 797

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124
            IP SI +LKG+ +LNL  N+L GHIPS LGNLT LESLDLS NK SG IP QL  LTFL
Sbjct: 798 QIPTSIGSLKGIHLLNLGGNDLTGHIPSSLGNLTQLESLDLSQNKLSGEIPWQLTRLTFL 857

Query: 125 EFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEA--PTNEDHTEGS 182
           EFFNVS N+LTG IPQGKQFATF+N SFD N GLCG PLS+ C S EA  PT+    +GS
Sbjct: 858 EFFNVSHNHLTGHIPQGKQFATFENASFDGNLGLCGSPLSRECGSSEALPPTSSSSKQGS 917

Query: 183 AESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGM-QQKATRR-GRRRR 240
                    DWKI+L GY  GL+ G+ +G+  ++    W ++ +G  Q+K TR+ GR +R
Sbjct: 918 TTKF-----DWKIVLMGYGSGLLIGVSIGYCLTSWKHEWFVKTIGKRQRKWTRKEGRGQR 972

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 122/242 (50%), Positives = 144/242 (59%), Gaps = 11/242 (4%)

Query: 1   MKIFNTSELRYLQ-DVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSN 59
           M+I +   L Y+Q D  F   Q S      Y +S TM +KG    Y  IPDIL  I LS+
Sbjct: 755 MRIVDAENLTYIQVDEEFEVPQYSWE--EPYPFSTTMTNKGMTREYELIPDILIAIDLSS 812

Query: 60  NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119
           NRF   IP SI N  GL+ LNL NN L G IP+ L NLT LE+LDLS NK S  IPQQLV
Sbjct: 813 NRFHGEIPESIGNPNGLRWLNLSNNALIGAIPTSLANLTLLEALDLSQNKLSREIPQQLV 872

Query: 120 ELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGE--APTNED 177
           +LTFL FFNVS N+LTGPIPQGKQFATF   SFD N GLCG PLS+ C S E   PT   
Sbjct: 873 QLTFLAFFNVSHNHLTGPIPQGKQFATFSRASFDGNPGLCGSPLSRACGSSEQSPPTPSS 932

Query: 178 HTEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQ-KATRRG 236
             +GS         DWK +L G   GLV G+ +G+  ++    W ++  G Q  K TR+ 
Sbjct: 933 SKQGSTSEF-----DWKFVLMGCGSGLVIGVSIGYCLTSWKHEWFVKTFGKQHTKWTRKE 987

Query: 237 RR 238
           RR
Sbjct: 988 RR 989

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745044|emb|CBI38636.3| unnamed protein product [Vitis vinifera]

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/232 (49%), Positives = 144/232 (62%), Gaps = 6/232 (2%)

Query: 9   LRYLQDVLFPYGQVSS-NVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIP 67
           LRY+Q    P  Q+   + + +Y YSM M +KG    Y +IPDI   I  S N F   IP
Sbjct: 536 LRYMQT--HPKFQIPGYSWIDSYMYSMRMTNKGMQRFYEQIPDIFIAIDFSGNNFKGQIP 593

Query: 68  ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF 127
            SI NLKGL +LNL  NNL GHI S LG+LT LESLDLS N+ SG IP QL  +TFL FF
Sbjct: 594 TSIGNLKGLHLLNLGGNNLTGHISSSLGDLTQLESLDLSQNQLSGEIPLQLTRITFLAFF 653

Query: 128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLF 187
           NVS+N+L+GPIPQGKQFATF + SFD N GLCG PLS+ C S EA      T  S++   
Sbjct: 654 NVSNNHLSGPIPQGKQFATFSSASFDGNPGLCGSPLSRACGSSEA---SPPTSSSSKQGS 710

Query: 188 SGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKATRRGRRR 239
           +   DWK +L GY  GLV G+ +G+  ++    W ++  G +Q+   R  RR
Sbjct: 711 TSEFDWKFVLMGYGSGLVIGVSIGYCLTSWKHEWFVKTFGKRQRKWTRKERR 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866761|emb|CAN80989.1| hypothetical protein VITISV_021527 [Vitis vinifera]

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/194 (55%), Positives = 127/194 (65%), Gaps = 5/194 (2%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
           Y YSMTM +KG    Y +IPD    I  S N F   IP SI NLKGL +LNL  NN+ GH
Sbjct: 495 YIYSMTMTNKGMQRFYQEIPDTFIAIDFSGNNFKGQIPTSIGNLKGLHLLNLGRNNITGH 554

Query: 90  IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           IPS L NLT +ESLDLS NK SG IP QL  +TFL FFNVS+N+LTGPIPQGKQFATF N
Sbjct: 555 IPSSLMNLTQMESLDLSQNKLSGEIPWQLTRMTFLAFFNVSNNHLTGPIPQGKQFATFPN 614

Query: 150 TSFDANSGLCGRPLSKGCESGEA-PTNEDHTEGSAESLFSGASDWKIILTGYAGGLVAGL 208
           TSFD N GLCG PLS+ C S EA P+    ++  + S F    DWK +L GY  GLV G+
Sbjct: 615 TSFDGNPGLCGSPLSRACGSSEASPSTPSSSKQGSTSEF----DWKFVLMGYGSGLVIGV 670

Query: 209 VLGFNFSTGIIGWI 222
            +G+  ++    W 
Sbjct: 671 SIGYCLTSWKHKWF 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 116/242 (47%), Positives = 145/242 (59%), Gaps = 7/242 (2%)

Query: 1   MKIFNTS-ELRYLQDVLFPYGQVSS-NVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILS 58
           MK+ + + +LRY+Q    P  Q+        Y YSMTM ++G    Y KIPD+   I  S
Sbjct: 648 MKLTDIANDLRYMQAR--PKFQIPGYGWTAHYMYSMTMTNRGMQRFYEKIPDVFIAIDFS 705

Query: 59  NNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 118
            N F   IP SI NL G  +LNL +NNL GHIPS LG+LT LESLDLS N+ SG IP QL
Sbjct: 706 GNNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLSGEIPLQL 765

Query: 119 VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDH 178
             +TFL FFNVS N+LTGPIPQG QF TF N SFD N GLCG PLS+ C S EA      
Sbjct: 766 TRITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSEA---SPP 822

Query: 179 TEGSAESLFSGASDWKIILTGYAGGLVAGLVLGFNFSTGIIGWILEKLGMQQKATRRGRR 238
           T  S++   +   DWK +L GY  GLV G+ +G+  ++    W ++  G +Q+   R  R
Sbjct: 823 TSSSSKQGSTSEFDWKFVLMGYGSGLVIGVSIGYYLTSWKHEWFVKTFGKRQRKWTRKER 882

Query: 239 RR 240
           R 
Sbjct: 883 RH 884

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447578|ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 131/203 (64%), Gaps = 1/203 (0%)

Query: 30   YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
            Y+YSMTM +KG    Y KIP     I LS+N+F   IP SI  L+GL +LN+ +N+L GH
Sbjct: 1742 YNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGH 1801

Query: 90   IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
            IPS LGNL  LE+LDLS N  SG IPQQL  +TFLEFFNVS N+L GPIPQGKQF TF N
Sbjct: 1802 IPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQN 1861

Query: 150  TSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGAS-DWKIILTGYAGGLVAGL 208
             S++ N GLCG PLSK CE+ ++      T+     L SG   +  I+L GY  GLV G+
Sbjct: 1862 DSYEGNPGLCGNPLSKECENSKSTAPPPPTDKHGGDLESGRKVELMIVLMGYGSGLVVGM 1921

Query: 209  VLGFNFSTGIIGWILEKLGMQQK 231
             +G+  +T    W ++  G +Q+
Sbjct: 1922 AIGYTLTTRKHEWFVKTFGKRQR 1944

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 116/196 (59%), Positives = 131/196 (66%), Gaps = 8/196 (4%)

Query: 6   TSELRYLQ-DVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDE 64
           T  L Y+Q D+ F   Q S      Y +SMTM +KG    Y KIPDILT I LS+N+F  
Sbjct: 561 TDNLTYIQADLEFEVPQYSWK--DPYSFSMTMMNKGMTREYKKIPDILTIIDLSSNKFYG 618

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124
            IP SI N KGLQ LNL NN L G IP+ L NLT LE+LDLS NK S  IPQQLV+LTFL
Sbjct: 619 EIPESIGNPKGLQALNLSNNALTGPIPTSLANLTLLEALDLSQNKLSREIPQQLVQLTFL 678

Query: 125 EFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEA-PTNEDHTEGSA 183
           EFFNVS N+LTGPIPQGKQFATF NTSFD N GLCG PLS+ C + EA P      + S+
Sbjct: 679 EFFNVSHNHLTGPIPQGKQFATFPNTSFDGNLGLCGSPLSRACGNSEASPPAPSIPQQSS 738

Query: 184 ESLFSGASDWKIILTG 199
            S F    DWKI+L G
Sbjct: 739 ASEF----DWKIVLMG 750

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 107/198 (54%), Positives = 129/198 (65%), Gaps = 8/198 (4%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
           Y+YSMTM +KG M  Y KI D LT I LS+N F+  IP  + +LK L +LNL NN L G 
Sbjct: 778 YEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDLKALHLLNLSNNFLSGG 837

Query: 90  IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           IP  L NL  LE+LDLS+NK SG IP QL +LTFL  FNVS N+L+G IP+G QF TFDN
Sbjct: 838 IPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNFLSGRIPRGNQFETFDN 897

Query: 150 TSFDANSGLCGRPLSKGCESGE---APTNEDHTEGSAESLFSGASDWKIILTGYAGGLVA 206
           TSFDAN GLCG PLSK C +GE       ED   GS        S WK+++ GYA GLV 
Sbjct: 898 TSFDANPGLCGEPLSKECGNGEDSLPAAKEDEGSGSPPE-----SRWKVVVIGYASGLVI 952

Query: 207 GLVLGFNFSTGIIGWILE 224
           G++LG   +T    W++E
Sbjct: 953 GVILGCAMNTRKYEWLVE 970

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 137/217 (63%), Gaps = 12/217 (5%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
           +DYSMTM +KG M  Y KI + LT I LS+NRF+  IP ++ +LK L +LNL NN L G 
Sbjct: 750 FDYSMTMTNKGVMTLYEKIQEFLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGR 809

Query: 90  IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           IP  L NL  LE+LDLS NK SG IP QL +LTFL  FNVS N L+GPIP+G QF TFD+
Sbjct: 810 IPPSLSNLKGLEALDLSQNKLSGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDS 869

Query: 150 TSFDANSGLCGRPLSKGCESGE----APTNEDHTEGSAESLFSGASDWKIILTGYAGGLV 205
           TSFDA+SGLCG+PLSK C SGE    AP  +   EGS   L  G   W +++ GYA GLV
Sbjct: 870 TSFDADSGLCGKPLSKKCGSGEDSLPAPKED---EGSGSPLEFG---WTVVVIGYASGLV 923

Query: 206 AGLVLGFNFSTGIIGWILEK--LGMQQKATRRGRRRR 240
            G +LG   +T    W ++   +  Q K      R R
Sbjct: 924 TGAILGCVMNTRKYEWQVKNYFVSWQHKGQYLKTRLR 960

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794486|emb|CAN71611.1| hypothetical protein VITISV_000631 [Vitis vinifera]

 Score =  197 bits (500), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 130/203 (64%), Gaps = 1/203 (0%)

Query: 30   YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
            Y+YSMTM +KG    Y KIP     I LS+N+F   IP SI  L+GL +LN+ +N+L GH
Sbjct: 1720 YNYSMTMTNKGMERVYPKIPRSFKAIDLSSNKFIGEIPKSIGKLRGLHLLNISSNSLTGH 1779

Query: 90   IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
            IPS LGNL  LE+LDLS N  SG IPQQL  +TFLEFFNVS N+L GPIPQGKQF TF N
Sbjct: 1780 IPSFLGNLAQLEALDLSQNNLSGEIPQQLKGMTFLEFFNVSHNHLMGPIPQGKQFNTFQN 1839

Query: 150  TSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGAS-DWKIILTGYAGGLVAGL 208
             S++ N GLCG PLSK C + ++  +   T      L SG   +  I+L GY  GLV G+
Sbjct: 1840 DSYEGNPGLCGNPLSKECGNSKSTASSPPTYKHGGDLESGRKVELMIVLMGYGSGLVVGM 1899

Query: 209  VLGFNFSTGIIGWILEKLGMQQK 231
             +G+  +T    W ++  G +Q+
Sbjct: 1900 AIGYTLTTRKHEWFVKTFGKRQR 1922

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.697	0.212	0.416	1.2e-26
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.759	0.310	0.373	3.1e-26
TAIR|locus:2046500	218	RLP25 "receptor like protein 2	0.730	0.807	0.371	2.6e-24
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.630	0.173	0.424	4.1e-24
TAIR|locus:2046600	800	RLP26 "receptor like protein 2	0.709	0.213	0.370	2.5e-23
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.701	0.228	0.395	9.6e-23
TAIR|locus:5019474716	543	AT2G15042 [Arabidopsis thalian	0.680	0.302	0.379	3.4e-22
TAIR|locus:2087253	884	RLP39 "AT3G24900" [Arabidopsis	0.767	0.209	0.357	5.9e-22
TAIR|locus:2086979	890	RLP42 "receptor like protein 4	0.713	0.193	0.366	5.9e-22
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.755	0.198	0.360	6.2e-22

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 70/168 (41%), Positives = 85/168 (50%)

Query:    33 SMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXXXIPS 92
             S+ +  KGR +   KIPD  T I  S N F+  IP SI +LK               IPS
Sbjct:   597 SIHLRIKGRSIELGKIPDTYTSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPS 656

Query:    93 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSF 152
              L  L  LESLDLS N+ SG IPQ+L ELTFL + N+S N LTG IPQ  Q      +SF
Sbjct:   657 SLAKLKQLESLDLSQNRISGNIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSF 716

Query:   153 DANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGY 200
             + N  LCG PL + C  G    +  HT+         A +WK    GY
Sbjct:   717 EGNINLCGLPLQESCLRGNGVPSTPHTQEQELPKQEHALNWKAAAIGY 764

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 3.1e-26, P = 3.1e-26
 Identities = 71/190 (37%), Positives = 98/190 (51%)

Query:    11 YLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASI 70
             Y ++ L+  G  SS+    Y+ ++ +  KG  M   K+    + I  S N+ +  IP SI
Sbjct:   370 YDEERLY-MGDYSSDRF-VYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEIPESI 427

Query:    71 SNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130
               LK               IP    N+T LESLDLS NK SG IPQ+L  L++L + +VS
Sbjct:   428 GLLKTLIALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVS 487

Query:   131 DNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGA 190
             DN LTG IPQG Q      +SF+ NSGLCG PL + C   +AP+ ++  E   E L    
Sbjct:   488 DNQLTGKIPQGTQIIGQPKSSFEGNSGLCGLPLEESCLREDAPSTQEPEEEEEEIL---- 543

Query:   191 SDWKIILTGY 200
              +W+    GY
Sbjct:   544 -EWRAAAIGY 552

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046500 RLP25 "receptor like protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 68/183 (37%), Positives = 89/183 (48%)

Query:    19 YGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXX 78
             YG +S     TY   + +  KG  M   +I  + + I  S NR +  IP SI  LK    
Sbjct:     8 YGSISY----TYQDFIDLRYKGLHMEQKRILTLYSAIDFSGNRLEGQIPESIGLLKALIA 63

Query:    79 XXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPI 138
                        IP  + NL  LESLD+S N  SG IPQ L  L+FL + NVS N L G I
Sbjct:    64 LNLSNNAFIGNIPMSMANLIELESLDMSRNGLSGTIPQGLKTLSFLGYINVSHNQLKGEI 123

Query:   139 PQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPT-NEDHTEGSAESLFSGASDWKIIL 197
             PQG Q      +SF+ N+GLCG PL + C   + P   +   E + E   +   +WK + 
Sbjct:   124 PQGTQITGPPKSSFEGNAGLCGLPLEESCFGTKVPPIQQSKKEDNQED--AKVLNWKAVA 181

Query:   198 TGY 200
             TGY
Sbjct:   182 TGY 184

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 4.1e-24, P = 4.1e-24
 Identities = 65/153 (42%), Positives = 82/153 (53%)

Query:    28 GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXX 87
             G Y  SM + +KG  M   +I  I T +  S N+F+  IP SI  LK             
Sbjct:   665 GYYHDSMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFT 724

Query:    88 XXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 147
               IPS +GNL  LESLD+S NK SG IPQ+L  L++L + N S N L G +P G QF T 
Sbjct:   725 GHIPSSMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQ 784

Query:   148 DNTSFDANSGLCGRPLSKGCESGEAPTNEDHTE 180
               +SF+ N GLCGRPL + C     PT    +E
Sbjct:   785 SASSFEENLGLCGRPLEE-CRVVHEPTPSGESE 816

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2046600 RLP26 "receptor like protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 66/178 (37%), Positives = 88/178 (49%)

Query:    25 NVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXXXXX 84
             N    Y+ +M +  KG  M   K+    + I  S N+ +  IP SI  LK          
Sbjct:   567 NAYYIYEDTMDLQYKGLFMEQGKVLTFYSTIDFSGNKLEGQIPESIGLLKELIALNLSNN 626

Query:    85 XXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 144
                  IP  L N+T LESLDLS N+ SG IP++L  L+FL + +V+ N L G IPQG QF
Sbjct:   627 AFTGHIPMSLANVTELESLDLSRNQLSGNIPRELGSLSFLAYISVAHNQLKGEIPQGPQF 686

Query:   145 ATFDNTSFDANSGLCGRPLSKGCESGEA--PTNEDHTEGSAESLFSGASDWKIILTGY 200
             +    +SF+ N GLCG PL   C +     P  ED  E   E +     +WK +  GY
Sbjct:   687 SGQAESSFEGNVGLCGLPLQGSCVAPPTKYPKEEDEEEEEDEVI-----EWKAVFFGY 739

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 9.6e-23, P = 9.6e-23
 Identities = 68/172 (39%), Positives = 85/172 (49%)

Query:    30 YDYSMTMNSKG-RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXX 88
             Y  S+ + +KG +M        I   I +S NR +  IP SI  LK              
Sbjct:   542 YHKSVALINKGLKMELVGSGFTIYKTIDVSGNRLEGDIPESIGLLKEVIVLSMSNNAFTG 601

Query:    89 XIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 148
              IP  L NL+NL+SLDLS N+ SG IP +L +LTFLE+ N S N L GPIP+  Q  T D
Sbjct:   602 HIPPSLSNLSNLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQD 661

Query:   149 NTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGY 200
             ++SF  N GLCG PL K C   E  T ++  E   E        W     GY
Sbjct:   662 SSSFTENPGLCGAPLLKKCGGEEEATKQEQDEDKEEE--DQVFSWIAAAIGY 711

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:5019474716 AT2G15042 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 63/166 (37%), Positives = 85/166 (51%)

Query:    21 QVSSNVLGT--YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXX 78
             Q +   +GT  Y  S+ + +KG  M   +I  I T +  S N+F+  IP SI  LK    
Sbjct:   324 QFNGEYMGTSYYSDSIVVMNKGLEMEMVRILKIFTSVDFSRNKFEGEIPKSIGLLKELHV 383

Query:    79 XXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPI 138
                        IPS +G L  LESLD++ NK SG IPQ L +L++L + N S N L GP+
Sbjct:   384 LNLSSNTFTGHIPSSMGKLRELESLDVAQNKLSGDIPQDLGDLSYLAYMNFSHNQLVGPL 443

Query:   139 PQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAE 184
             P G QF T + +SF+ N+G  G  L K C+       E    GS E
Sbjct:   444 PGGTQFLTQNCSSFEENAGHFGPSLEKVCDIHGKTMQESEMPGSEE 489

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2087253 RLP39 "AT3G24900" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 69/193 (35%), Positives = 90/193 (46%)

Query:    13 QDVLFPYGQVSSNVLGTYDYS----MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPA 68
             Q +   Y +V   V GTY ++    + +  KG  M  N++      I  S NR +  IP 
Sbjct:   664 QGLYMVYNKV---VYGTYYFTSLEAIDLQYKGLSMEQNRVLSSSATIDFSGNRLEGEIPE 720

Query:    69 SISNLKXXXXXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128
             SI  LK               IP  L NL  +ESLDLS+N+ SG IP  +  L+FL + N
Sbjct:   721 SIGLLKALIALNLSNNAFTGHIPLSLANLKKIESLDLSSNQLSGTIPNGIGTLSFLAYMN 780

Query:   129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAP-TNEDHTEGSAESLF 187
             VS N L G IPQG Q      +SF+ N+GLCG PL + C    AP       E   E   
Sbjct:   781 VSHNQLNGEIPQGTQITGQPKSSFEGNAGLCGLPLQESCFGTNAPPAQHPKEEEEEEEEE 840

Query:   188 SGASDWKIILTGY 200
                 +WK +  GY
Sbjct:   841 EQVLNWKGVGIGY 853

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2086979 RLP42 "receptor like protein 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 5.9e-22, P = 5.9e-22
 Identities = 63/172 (36%), Positives = 81/172 (47%)

Query:    29 TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXXXXXXXXX 88
             TY  ++ +  KG  M    +      I LS NR +  IP S+  LK              
Sbjct:   679 TYYETIDLRYKGLSMEQENVLTSSATIDLSGNRLEGEIPESLGLLKALIALNLSNNAFTG 738

Query:    89 XIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD 148
              IP  L NL  +ESLDLS+N+ SG IP  L  L+FL + NVS N L G IPQG Q     
Sbjct:   739 HIPLSLANLKKIESLDLSSNQLSGTIPNGLGTLSFLAYMNVSHNQLNGEIPQGTQITGQP 798

Query:   149 NTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIILTGY 200
              +SF+ N+GLCG PL + C    AP  +   E           +WK +  GY
Sbjct:   799 KSSFEGNAGLCGFPLQESCFGTNAPPAQKPKEEEEAEEDEQELNWKAVAIGY 850

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 66/183 (36%), Positives = 84/183 (45%)

Query:    19 YGQVS-SNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXX 77
             YG+V   N   TY  ++ +  KG  M    +      I  S NR +  IP SI  LK   
Sbjct:   701 YGKVIFGNYHLTYYETIDLRYKGLSMEQRNVLTSSATIDFSGNRLEGEIPESIGLLKALI 760

Query:    78 XXXXXXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGP 137
                         IP    NL  +ESLDLS+N+ SG IP  L  L+FL + NVS N L G 
Sbjct:   761 ALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLAYVNVSHNQLIGE 820

Query:   138 IPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESLFSGASDWKIIL 197
             IPQG Q      +SF+ N+GLCG PL + C     P  +   E   E       +WK + 
Sbjct:   821 IPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQHPKEQEEEEEDEQVLNWKAVA 880

Query:   198 TGY 200
              GY
Sbjct:   881 IGY 883

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029125001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (681 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-13
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-09
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	4e-05

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 94.5 bits (235), Expect = 4e-22
 Identities = 48/121 (39%), Positives = 69/121 (57%), Gaps = 2/121 (1%)

Query: 51  ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
            + G+ L N      IP  IS L+ LQ +NL  N+++G+IP  LG++T+LE LDLS N F
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDA--NSGLCGRPLSKGCE 168
           +G IP+ L +LT L   N++ N L+G +P           SF+   N+GLCG P  + C 
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538

Query: 169 S 169
            
Sbjct: 539 P 539

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 7e-15
 Identities = 41/89 (46%), Positives = 48/89 (53%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  I L  N     IP  I  L  L  L+L  NNL G IPS LGNL NL+ L L  NK S
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           G IP  +  L  L   ++SDN L+G IP+
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPE 302

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 36/82 (43%), Positives = 48/82 (58%)

Query: 60  NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119
           N     IP+S+ NLK LQ L L+ N L G IP  + +L  L SLDLS+N  SG IP+ ++
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305

Query: 120 ELTFLEFFNVSDNYLTGPIPQG 141
           +L  LE  ++  N  TG IP  
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVA 327

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 39/110 (35%), Positives = 56/110 (50%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           LS N+    IP  +S+ K L  L+L +N L G IP+    +  L  LDLS N+ SG IP+
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKG 166
            L  +  L   N+S N+L G +P    F   + ++   N  LCG   + G
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG 615

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 71.4 bits (175), Expect = 3e-14
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 33  SMTMNSKGRMMTYNKIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ 87
           S+ M S  R   +  +PD      L  + LS N+F  A+P  + +L  L  L L  N L 
Sbjct: 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512

Query: 88  GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           G IP  L +   L SLDLS+N+ SG+IP    E+  L   ++S N L+G IP
Sbjct: 513 GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.6 bits (165), Expect = 6e-13
 Identities = 35/83 (42%), Positives = 52/83 (62%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           LSNN     IP  I +   L+VL+L  N L G IP+ L NLT+LE L L++N+  G+IP+
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206

Query: 117 QLVELTFLEFFNVSDNYLTGPIP 139
           +L ++  L++  +  N L+G IP
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIP 229

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 7e-13
 Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 47  KIPDILTGI------ILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL 100
           KIP+ LT +       L++N+    IP  +  +K L+ + L  NNL G IP  +G LT+L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 101 ESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
             LDL  N  +G IP  L  L  L++  +  N L+GPIP
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 4/84 (4%)

Query: 57  LSNNRFDEAIP-ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 115
           LSNN F  +IP  SI NL   + L+L NN L G IP+ +G+ ++L+ LDL  N   G+IP
Sbjct: 125 LSNNNFTGSIPRGSIPNL---ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181

Query: 116 QQLVELTFLEFFNVSDNYLTGPIP 139
             L  LT LEF  ++ N L G IP
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 7e-12
 Identities = 37/90 (41%), Positives = 53/90 (58%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS+N     IP  +  L+ L++L+L +NN  G IP  L +L  L+ L L +NKFS
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFS 345

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
           G IP+ L +   L   ++S N LTG IP+G
Sbjct: 346 GEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 2/91 (2%)

Query: 55  IILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 114
           + L  N+    IP SI +L+ L  L+L +N+L G IP  +  L NLE L L +N F+G+I
Sbjct: 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI 324

Query: 115 PQQLVELTFLEFFNVSDNYLTGPIPQ--GKQ 143
           P  L  L  L+   +  N  +G IP+  GK 
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 8e-11
 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 15/130 (11%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L+ N+F   +P S    K L+ L+L  N   G +P  LG+L+ L  L LS NK SG IP 
Sbjct: 459 LARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNE 176
           +L     L   ++S N L+G IP           SF     L    LS+   SGE P N 
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIP----------ASFSEMPVLSQLDLSQNQLSGEIPKN- 566

Query: 177 DHTEGSAESL 186
               G+ ESL
Sbjct: 567 ---LGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 5e-10
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 47  KIPDIL------TGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL 100
           +IP+ L        +IL +N  +  IP S+   + L+ + L +N+  G +PS    L  +
Sbjct: 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

Query: 101 ESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
             LD+SNN   GRI  +  ++  L+  +++ N   G +P 
Sbjct: 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 31/87 (35%), Positives = 47/87 (54%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + LS N     IP  + +   L  L L +N+L+G IP  LG   +L  + L +N FS
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPI 138
           G +P +  +L  + F ++S+N L G I
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRI 444

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT-NLESLDLSNNKF 110
           +  I LS       I ++I  L  +Q +NL NN L G IP  +   + +L  L+LSNN F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           +G IP+  +    LE  ++S+N L+G IP 
Sbjct: 131 TGSIPRGSIPN--LETLDLSNNMLSGEIPN 158

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 9e-09
 Identities = 23/59 (38%), Positives = 28/59 (47%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + LSNNR       +   L  L+VL+L  NNL    P     L +L SLDLS N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 71  SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF-LEFFNV 129
           +N   +  ++L   N+ G I S +  L  +++++LSNN+ SG IP  +   +  L + N+
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 130 SDNYLTGPIPQG 141
           S+N  TG IP+G
Sbjct: 126 SNNNFTGSIPRG 137

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 27  LGTYDYSMTMNSKGRMMTYNKIPDILTG------IILSNNRFDEAIPASISNLKGLQVLN 80
           LG+    M +      ++  +IPD L+       + LS+N+    IPAS S +  L  L+
Sbjct: 495 LGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553

Query: 81  LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 115
           L  N L G IP  LGN+ +L  +++S+N   G +P
Sbjct: 554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 31/76 (40%), Positives = 50/76 (65%), Gaps = 3/76 (3%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           LS+N+  E++P+ + NL  L+ L+L  N+L   +P  L NL+NL +LDLS NK S  +P 
Sbjct: 147 LSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPP 203

Query: 117 QLVELTFLEFFNVSDN 132
           ++  L+ LE  ++S+N
Sbjct: 204 EIELLSALEELDLSNN 219

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 75  GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYL 134
            L+ L+L NN L          L NL+ LDLS N  +   P+    L  L   ++S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 4/82 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLK-GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           LT + L NN   + IP  I  LK  L+ L+L +N ++  +PS L NL NL++LDLS N  
Sbjct: 118 LTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL 175

Query: 111 SGRIPQQLVELTFLEFFNVSDN 132
           S  +P+ L  L+ L   ++S N
Sbjct: 176 S-DLPKLLSNLSNLNNLDLSGN 196

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 2e-05
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 4/125 (3%)

Query: 44  TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 103
                   L  + LS N+    +P  I  L  L+ L+L NN++   + S L NL NL  L
Sbjct: 180 KLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGL 237

Query: 104 DLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPL 163
           +LSNNK    +P+ +  L+ LE  ++S+N ++     G             NS     PL
Sbjct: 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISSLGS-LTNLRELDLSGNSLSNALPL 295

Query: 164 SKGCE 168
                
Sbjct: 296 IALLL 300

Length = 394

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 74  KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
             L+ L+L NN +   +P  L NL NLE+LDLS NK +
Sbjct: 1   TNLETLDLSNNQITD-LPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PLN03150	623	hypothetical protein; Provisional	99.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.37
PLN03150	623	hypothetical protein; Provisional	99.32
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.26
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.23
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.15
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.08
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.05
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.0
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.99
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.95
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.77
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.63
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.56
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.42
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.4
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.36
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.32
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.2
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.19
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.03
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.86
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.41
PRK15386	426	type III secretion protein GogB; Provisional	97.08
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.59
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.57
PRK15386	426	type III secretion protein GogB; Provisional	96.45
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.13
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.91
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.94
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	92.7
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.33
smart00370	26	LRR Leucine-rich repeats, outliers.	92.33
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.77
smart00370	26	LRR Leucine-rich repeats, outliers.	91.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.6
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.21
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.52
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.48
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.86
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.35
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.09
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	81.04

>PLN03150 hypothetical protein; Provisional

Probab=99.81  E-value=9.6e-20  Score=168.55  Aligned_cols=118  Identities=40%  Similarity=0.692  Sum_probs=106.8

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCc--cCccCcccccCCCCCCCCCCCCCCC
Q 026255          131 DNYLTGPIPQGKQ--FATFDNTSFDANSGLCGRPLSKGCE  168 (241)
Q Consensus       131 ~N~l~g~~p~~~~--~~~l~~~~~~~n~~lc~~~~~~~c~  168 (241)
                      +|.++|.+|....  ...+..+++.+|+.+|+.|....|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            9999999997532  2344577899999999987656664

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.76  E-value=3.4e-18  Score=166.05  Aligned_cols=114  Identities=34%  Similarity=0.565  Sum_probs=102.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+.|++++|++++.+|..+..+++|++++
T Consensus       498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~  577 (968)
T PLN00113        498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN  577 (968)
T ss_pred             hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence            56788899999999888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      +++|++.|.+|...++.++....+.||+.+|+.+
T Consensus       578 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        578 ISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             ccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            9999999999988888888888899999999754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.67  E-value=7.7e-16  Score=149.68  Aligned_cols=115  Identities=33%  Similarity=0.516  Sum_probs=105.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      .++|+.|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus       474 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  553 (968)
T PLN00113        474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD  553 (968)
T ss_pred             cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEE
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      +++|+++|.+|.. ..+..+..+++++|+..+..|.
T Consensus       554 Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        554 LSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             CCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999875 4567788899999988765553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.37  E-value=6.3e-14  Score=124.20  Aligned_cols=160  Identities=19%  Similarity=0.261  Sum_probs=115.4

Q ss_pred             CCCCCccccccccCCCCcccccccce-----eEEEEEeecc---cccccCccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVLGTY-----DYSMTMNSKG---RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGL   76 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L   76 (241)
                      -+-+|+.|+.+++++|.|++......     ...+.++.+.   ++..-...+..|++|.|++|.|+..-...|..+++|
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence            34567788888888888876554331     1122222222   222222336778888888888887777788888999


Q ss_pred             ceEecccCcCCCCCcc---ccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCccccc
Q 026255           77 QVLNLHNNNLQGHIPS---CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD  153 (241)
Q Consensus        77 ~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~  153 (241)
                      ++|||++|.+++.+-+   .|.++++|+.|++.+|++...-..+|..+..|++|||.+|.+...-|....-..+..+.+.
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence            9999999998876654   4778999999999999998444467889999999999999998666655443467777787


Q ss_pred             CCCCCCCCCCC
Q 026255          154 ANSGLCGRPLS  164 (241)
Q Consensus       154 ~n~~lc~~~~~  164 (241)
                      ...++|+|.+.
T Consensus       448 SssflCDCql~  458 (873)
T KOG4194|consen  448 SSSFLCDCQLK  458 (873)
T ss_pred             ccceEEeccHH
Confidence            88889998543

>PLN03150 hypothetical protein; Provisional

Probab=99.32  E-value=1.1e-11  Score=115.25  Aligned_cols=91  Identities=38%  Similarity=0.551  Sum_probs=82.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhc-cccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVEL-TFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L  127 (241)
                      +++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+... .++..+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            6789999999999999999999999999999999999999999999999999999999999999999988764 466789


Q ss_pred             eccCCcccCCCC
Q 026255          128 NVSDNYLTGPIP  139 (241)
Q Consensus       128 ~l~~N~l~g~~p  139 (241)
                      ++.+|...+..|
T Consensus       521 ~~~~N~~lc~~p  532 (623)
T PLN03150        521 NFTDNAGLCGIP  532 (623)
T ss_pred             EecCCccccCCC
Confidence            999987654333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.26  E-value=6.2e-13  Score=118.04  Aligned_cols=108  Identities=22%  Similarity=0.222  Sum_probs=75.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ++.|+.|+|+.|.|..+-++.+...++|++|+|++|+++...+.+|..+..|++|+|++|+++..-...|..+.+|+.||
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~Ld  371 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLD  371 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhc
Confidence            56677777777777777777777777777777777777766666677777777777777777744445666777777788


Q ss_pred             ccCCcccCCCCCC----CccCccCcccccCCC
Q 026255          129 VSDNYLTGPIPQG----KQFATFDNTSFDANS  156 (241)
Q Consensus       129 l~~N~l~g~~p~~----~~~~~l~~~~~~~n~  156 (241)
                      |++|.+++.+-+.    ..++.+..+.+.||.
T Consensus       372 Lr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq  403 (873)
T KOG4194|consen  372 LRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ  403 (873)
T ss_pred             CcCCeEEEEEecchhhhccchhhhheeecCce
Confidence            8888777665543    235566666666664

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.23  E-value=1.1e-12  Score=100.40  Aligned_cols=108  Identities=31%  Similarity=0.429  Sum_probs=82.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L  127 (241)
                      +.+|+.|++.+|+|.. +|..++.++.|+.|++.-|++. .+|..|+.++.|+.||+..|++.. .+|..|..+..|+.|
T Consensus        55 l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlral  132 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRAL  132 (264)
T ss_pred             hhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHH
Confidence            5678888888888865 7778888888888888888888 888888888888888888888753 567777777888888


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l  158 (241)
                      +++.|.|.-..|+..++..+..+.+..|..+
T Consensus       133 yl~dndfe~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen  133 YLGDNDFEILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             HhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence            8888888744555566666666666655433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.15  E-value=1.2e-12  Score=100.22  Aligned_cols=106  Identities=25%  Similarity=0.409  Sum_probs=66.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCC-CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      ++.|+.|+++-|.+. ..|..|+.++.|+.|||..|++. ..+|..|..+..|+.|+++.|.+. .+|..++.+++|+.|
T Consensus        78 l~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen   78 LPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQIL  155 (264)
T ss_pred             chhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence            556667777777764 36666777777777777777664 245666666666666666666666 566666666666666


Q ss_pred             eccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255          128 NVSDNYLTGPIPQ-GKQFATFDNTSFDANSG  157 (241)
Q Consensus       128 ~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~  157 (241)
                      .+..|.+- .+|. ...+..+..+.++||..
T Consensus       156 ~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             eeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            66666665 3333 24445555566666643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.08  E-value=3.9e-12  Score=108.61  Aligned_cols=104  Identities=21%  Similarity=0.300  Sum_probs=85.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccC-CCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG-NLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +..|..|+|.+|+|.. .| +|.++..|..+++..|+++ .+|.+.. +++++.+||+..|++. +.|+.+.-+.+|..|
T Consensus       205 l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rL  280 (565)
T KOG0472|consen  205 LESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERL  280 (565)
T ss_pred             hhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhh
Confidence            5566677777777754 44 6777777778888888877 6666655 7899999999999999 899999999999999


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      |+++|.+++..+....+ .+..+.++|||.
T Consensus       281 DlSNN~is~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  281 DLSNNDISSLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             cccCCccccCCcccccc-eeeehhhcCCch
Confidence            99999999777776666 888889999984

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.05  E-value=9.8e-11  Score=75.55  Aligned_cols=60  Identities=48%  Similarity=0.649  Sum_probs=39.0

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcC
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF  110 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  110 (241)
                      +|++|++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466667777766665556666666666666666666655555666666666666666654

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.04  E-value=4.3e-11  Score=102.01  Aligned_cols=133  Identities=22%  Similarity=0.251  Sum_probs=104.3

Q ss_pred             EEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccC-CcC
Q 026255           32 YSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN-NKF  110 (241)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l  110 (241)
                      ..+.|..+++...+..+|+..++++|..|+|+.++|..|+.+++|+.|||++|.|+..-|+.|.++++|..|-+.+ |+|
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            4578899999999999999999999999999999999999999999999999999999999999999987776655 899


Q ss_pred             CCCCchhHhhccccceEeccCCcccCCC-----------------------CCC--CccCccCcccccCCCCCCCCCCC
Q 026255          111 SGRIPQQLVELTFLEFFNVSDNYLTGPI-----------------------PQG--KQFATFDNTSFDANSGLCGRPLS  164 (241)
Q Consensus       111 ~~~~p~~l~~l~~L~~L~l~~N~l~g~~-----------------------p~~--~~~~~l~~~~~~~n~~lc~~~~~  164 (241)
                      +......|..+.+|+.|.+.-|++....                       +.+  ..+..+..+.+..||+.|+|.+.
T Consensus       129 ~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            8544456777777777766666665321                       111  12334455667778888877543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=3.1e-10  Score=88.60  Aligned_cols=102  Identities=27%  Similarity=0.399  Sum_probs=34.9

Q ss_pred             cCccEEEccCCCCCccchhhhc-CCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhH-hhccccceE
Q 026255           50 DILTGIILSNNRFDEAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL-VELTFLEFF  127 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L  127 (241)
                      ..+++|+|++|.|+.+  +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+|+ .+.+.+ ..+++|+.|
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            3578888888888763  2355 5778888888888888 454 3677888888888888888 454444 467888888


Q ss_pred             eccCCcccCCCCCC---CccCccCcccccCCCC
Q 026255          128 NVSDNYLTGPIPQG---KQFATFDNTSFDANSG  157 (241)
Q Consensus       128 ~l~~N~l~g~~p~~---~~~~~l~~~~~~~n~~  157 (241)
                      ++++|++.. +-+.   ..++.+..+++.|||.
T Consensus        94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   94 YLSNNKISD-LNELEPLSSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             E-TTS---S-CCCCGGGGG-TT--EEE-TT-GG
T ss_pred             ECcCCcCCC-hHHhHHHHcCCCcceeeccCCcc
Confidence            888888863 2222   3456677778888875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.00  E-value=6.6e-11  Score=106.29  Aligned_cols=35  Identities=40%  Similarity=0.543  Sum_probs=13.7

Q ss_pred             ccEEEccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255           52 LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ   87 (241)
Q Consensus        52 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~   87 (241)
                      |+.||||+|++.. .|..+...+++-.|+||+|+|.
T Consensus       105 Lt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen  105 LTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             ceeeecchhhhhh-cchhhhhhcCcEEEEcccCccc
Confidence            3444444444432 3333333333334444444433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.99  E-value=1.8e-10  Score=74.27  Aligned_cols=61  Identities=39%  Similarity=0.615  Sum_probs=55.5

Q ss_pred             CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcc
Q 026255           74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYL  134 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l  134 (241)
                      ++|++|++++|+++...+..|..+++|++|++++|+++...|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5789999999999966667899999999999999999977777899999999999999975

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.97  E-value=5.3e-11  Score=106.91  Aligned_cols=107  Identities=30%  Similarity=0.459  Sum_probs=90.0

Q ss_pred             CcCccEEEccCCCCCc-cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh-Hhhccccce
Q 026255           49 PDILTGIILSNNRFDE-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~  126 (241)
                      ++.|+.+++.+|++.. -+|+.+-.+..|+.||||+|++. ..|..+....++-.|+||+|+|. .+|.. +.++.-|-+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            6678889999999842 26667778999999999999999 89999999999999999999998 67754 668889999


Q ss_pred             EeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          127 FNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       127 L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      ||||+|++....|....+..+.++.+++||.
T Consensus       155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             hccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            9999999997667666677777788888874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=5.5e-10  Score=87.18  Aligned_cols=114  Identities=29%  Similarity=0.309  Sum_probs=41.9

Q ss_pred             CCCCCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255            3 IFNTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH   82 (241)
Q Consensus         3 ~~~~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls   82 (241)
                      +.+..|...+.++++..|+|+...             ++    ...+.+|+.|+|++|.|+..  +.+..++.|+.|+++
T Consensus        12 ~~~~~n~~~~~~L~L~~n~I~~Ie-------------~L----~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~   72 (175)
T PF14580_consen   12 IAQYNNPVKLRELNLRGNQISTIE-------------NL----GATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLS   72 (175)
T ss_dssp             -------------------------------------S------TT-TT--EEE-TTS--S----TT----TT--EEE--
T ss_pred             cccccccccccccccccccccccc-------------ch----hhhhcCCCEEECCCCCCccc--cCccChhhhhhcccC
Confidence            344555566677777777777322             11    11256799999999999874  347889999999999


Q ss_pred             cCcCCCCCcccc-CCCCccceeeccCCcCCCCC-chhHhhccccceEeccCCcccC
Q 026255           83 NNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRI-PQQLVELTFLEFFNVSDNYLTG  136 (241)
Q Consensus        83 ~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~g  136 (241)
                      +|.++ .++..+ ..+++|+.|++++|+|...- -..+..+++|+.|++.+|+++.
T Consensus        73 ~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   73 NNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            99999 555444 46899999999999997421 1457789999999999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.95  E-value=1e-10  Score=108.70  Aligned_cols=107  Identities=26%  Similarity=0.409  Sum_probs=93.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ..+|+.|+|++|++...+...+.++..|+.|+||+|.++ .+|..+..+..|++|...+|++. .+| .+..++.|+.+|
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            578999999999998767777899999999999999999 89999999999999999999998 888 688999999999


Q ss_pred             ccCCcccC-CCCCCCccCccCcccccCCCCC
Q 026255          129 VSDNYLTG-PIPQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g-~~p~~~~~~~l~~~~~~~n~~l  158 (241)
                      ++.|+++. .+|....-+.+..+++.||.++
T Consensus       459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            99999974 3444433378899999999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.89  E-value=3e-09  Score=100.08  Aligned_cols=80  Identities=28%  Similarity=0.409  Sum_probs=36.7

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      .+|+.|++++|.|++ +|..   .++|+.|++++|.++ .+|...   .+|+.|++++|+++ .+|..+..+++|+.+++
T Consensus       382 ~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        382 SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  452 (788)
T ss_pred             cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEEC
Confidence            344444444444443 2221   134444555555544 233321   23444555555554 45555555555555555


Q ss_pred             cCCcccCCC
Q 026255          130 SDNYLTGPI  138 (241)
Q Consensus       130 ~~N~l~g~~  138 (241)
                      ++|+|++..
T Consensus       453 s~N~Ls~~~  461 (788)
T PRK15387        453 EGNPLSERT  461 (788)
T ss_pred             CCCCCCchH
Confidence            555555443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.86  E-value=7.1e-10  Score=94.99  Aligned_cols=108  Identities=30%  Similarity=0.381  Sum_probs=65.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|+|++|-+.. +|.+++.+-.|+.|+++.|+|. .+|..+..+..++.+-.++|++....|+.+..+.+|..||
T Consensus       434 l~kLt~L~L~NN~Ln~-LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  434 LQKLTFLDLSNNLLND-LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             hhcceeeecccchhhh-cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence            3444445555554433 4444444545555555555554 4444444444444444445555544444577788888899


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l  158 (241)
                      +.+|.+....|......++..+.++|||+-
T Consensus       512 L~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  512 LQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cCCCchhhCChhhccccceeEEEecCCccC
Confidence            999988855555677888888888888864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.85  E-value=7e-09  Score=97.66  Aligned_cols=139  Identities=20%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             ccccccccCCCCcccccc-cceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcC----------------
Q 026255           10 RYLQDVLFPYGQVSSNVL-GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISN----------------   72 (241)
Q Consensus        10 ~~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~----------------   72 (241)
                      ++|+.++++.|+++.... ......+.+..+.+. .++.++.+|+.|+|++|+|++ +|....+                
T Consensus       302 ~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~lp~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~  379 (788)
T PRK15387        302 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPTLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPA  379 (788)
T ss_pred             cccceeECCCCccccCCCCcccccccccccCccc-cccccccccceEecCCCccCC-CCCCCcccceehhhccccccCcc
Confidence            456666666676664321 111111222222221 123345677788888888765 3332111                


Q ss_pred             -CCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcc
Q 026255           73 -LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNT  150 (241)
Q Consensus        73 -l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~  150 (241)
                       ..+|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|...   .+|+.|++++|+++ .+|.. ..+..+..+
T Consensus       380 l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L  450 (788)
T PRK15387        380 LPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTV  450 (788)
T ss_pred             cccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence             123445555555555 23332   235566666666665 345422   34566777777776 45543 446677788


Q ss_pred             cccCCCCCC
Q 026255          151 SFDANSGLC  159 (241)
Q Consensus       151 ~~~~n~~lc  159 (241)
                      ++++|+...
T Consensus       451 dLs~N~Ls~  459 (788)
T PRK15387        451 NLEGNPLSE  459 (788)
T ss_pred             ECCCCCCCc
Confidence            888888653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.77  E-value=3.2e-10  Score=105.48  Aligned_cols=147  Identities=23%  Similarity=0.271  Sum_probs=111.5

Q ss_pred             CCCccccccccCCCCcccccccceeEEEEE-------eecc---cccccCccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255            7 SELRYLQDVLFPYGQVSSNVLGTYDYSMTM-------NSKG---RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGL   76 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L   76 (241)
                      ..+++|..|++..|+|.+..... ....+.       +...   ++..-....+.|+.|++.+|.++...-+.+-++.+|
T Consensus       307 e~~~sL~tLdL~~N~L~~lp~~~-l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL  385 (1081)
T KOG0618|consen  307 EGLKSLRTLDLQSNNLPSLPDNF-LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL  385 (1081)
T ss_pred             cccceeeeeeehhccccccchHH-HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence            44667777777777776544311 011111       1111   111112335678899999999998888889999999


Q ss_pred             ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255           77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus        77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      +.|+|++|++.......+.++..|+.|+||+|+++ .+|+.+..+..|++|...+|++. ..|+..++..+..++++.|.
T Consensus       386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccch
Confidence            99999999999444456888999999999999999 89999999999999999999998 77888888888888888874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.77  E-value=1e-08  Score=96.70  Aligned_cols=53  Identities=25%  Similarity=0.407  Sum_probs=25.2

Q ss_pred             ccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255           99 NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus        99 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      +|+.|++++|.++ .+|..+.  ++|+.|++++|+++ .+|... ...+..+++.+|.
T Consensus       326 sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~  378 (754)
T PRK15370        326 GLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNA  378 (754)
T ss_pred             cceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCc
Confidence            3444444444444 2333321  45566666666655 344321 2345556666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.77  E-value=6.2e-09  Score=98.12  Aligned_cols=99  Identities=25%  Similarity=0.409  Sum_probs=51.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+++ .+|..+.  .+|+.|+
T Consensus       324 ~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~Ld  394 (754)
T PRK15370        324 PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQ  394 (754)
T ss_pred             cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHh
Confidence            3455555555555544 333332  45666666666665 4554432  45666666666666 4454433  2456666


Q ss_pred             ccCCcccCCCCCC-----CccCccCcccccCCCC
Q 026255          129 VSDNYLTGPIPQG-----KQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~~p~~-----~~~~~l~~~~~~~n~~  157 (241)
                      +++|++. .+|..     .....+..+.+.+|+.
T Consensus       395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            6666665 33432     1123344556666664

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.68  E-value=1.5e-08  Score=86.76  Aligned_cols=96  Identities=22%  Similarity=0.259  Sum_probs=72.3

Q ss_pred             hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCc
Q 026255           68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFAT  146 (241)
Q Consensus        68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~  146 (241)
                      ..|..+++|++|+|++|.+++.-+.+|.++..+++|.|..|++.......|.++..|+.|+|.+|+++..-|.. ..+..
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            34778888888888888888777788888888888888888887555667778888888888888887555533 23445


Q ss_pred             cCcccccCCCCCCCCCC
Q 026255          147 FDNTSFDANSGLCGRPL  163 (241)
Q Consensus       147 l~~~~~~~n~~lc~~~~  163 (241)
                      +..+.+.+||+.|+|.+
T Consensus       348 l~~l~l~~Np~~CnC~l  364 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRL  364 (498)
T ss_pred             eeeeehccCcccCccch
Confidence            66777788888887743

>PLN03210 Resistant to P

Probab=98.65  E-value=1.8e-07  Score=92.95  Aligned_cols=108  Identities=23%  Similarity=0.346  Sum_probs=88.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +.+|+.|++++|.+.. ++..+..+++|+.|+|+++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            5789999999999865 677788899999999998765557775 78899999999999876668899999999999999


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l  158 (241)
                      +++|...+.+|....+.++..+++.|+..+
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRL  717 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCc
Confidence            998765557787666777777777776543

syringae 6; Provisional

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.63  E-value=5.2e-09  Score=93.14  Aligned_cols=126  Identities=23%  Similarity=0.308  Sum_probs=98.8

Q ss_pred             CCCCccccccccCCCCcccccccce---eEEEEEeecc---cccccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            6 TSELRYLQDVLFPYGQVSSNVLGTY---DYSMTMNSKG---RMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      ..+|..|++++++.|+++....+..   +..+-.+.++   ++.... ....|..||.+.|.+.. +|..++.+.+|+.|
T Consensus       117 i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig-~~~tl~~ld~s~nei~s-lpsql~~l~slr~l  194 (722)
T KOG0532|consen  117 ICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIG-LLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDL  194 (722)
T ss_pred             hhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccc-cchhHHHhhhhhhhhhh-chHHhhhHHHHHHH
Confidence            4578889999999999987665331   1122223333   333333 57778889999999966 77888999999999


Q ss_pred             ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC
Q 026255           80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG  136 (241)
Q Consensus        80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  136 (241)
                      +++.|++. .+|.++..++ |..||++.|+++ .+|-.|..|..|++|-|.+|.++.
T Consensus       195 ~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  195 NVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             HHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            99999999 7777787654 889999999999 899999999999999999999984

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.58  E-value=1.1e-08  Score=84.89  Aligned_cols=104  Identities=24%  Similarity=0.317  Sum_probs=57.5

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      .+.++.|++++|.|...  ..+..+++|+.||||+|.++ .+-..-..+-+.++|.|+.|.+. .+ ..+..+-+|..||
T Consensus       306 ~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLD  380 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLD  380 (490)
T ss_pred             ccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecc
Confidence            45566666666666442  22555666666666666655 34333344555566666666654 22 3355566777777


Q ss_pred             ccCCcccC--CCCCCCccCccCcccccCCCC
Q 026255          129 VSDNYLTG--PIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g--~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      +++|++..  .+.....++-+..+.+.+||.
T Consensus       381 l~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  381 LSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            77777652  122224445555566666664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.56  E-value=1.4e-08  Score=84.35  Aligned_cols=102  Identities=23%  Similarity=0.303  Sum_probs=81.2

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      ..|+++||++|.|+. +.++..-++.++.|++|+|.+. .+.. ++.+++|+.|||++|.++ .+-.+-..+-+.+.|.+
T Consensus       284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhh-hhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            358899999999976 6677888899999999999998 4444 888999999999999998 66666667888999999


Q ss_pred             cCCcccCCCCCCCccCccCcccccCCC
Q 026255          130 SDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus       130 ~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      +.|.+. .+.....+-++..+++.+|.
T Consensus       360 a~N~iE-~LSGL~KLYSLvnLDl~~N~  385 (490)
T KOG1259|consen  360 AQNKIE-TLSGLRKLYSLVNLDLSSNQ  385 (490)
T ss_pred             hhhhHh-hhhhhHhhhhheeccccccc
Confidence            999886 33333445566677777774

>PLN03210 Resistant to P

Probab=98.45  E-value=8.9e-07  Score=88.07  Aligned_cols=89  Identities=26%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|+|+++...+.+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|.....+|..+ ++++|+.|+
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~  710 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN  710 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence            66788888887654444554 6778888888888876655788888888888888888765444666654 567777777


Q ss_pred             ccCCcccCCCC
Q 026255          129 VSDNYLTGPIP  139 (241)
Q Consensus       129 l~~N~l~g~~p  139 (241)
                      +++|...+.+|
T Consensus       711 Lsgc~~L~~~p  721 (1153)
T PLN03210        711 LSGCSRLKSFP  721 (1153)
T ss_pred             CCCCCCccccc
Confidence            77765444444

syringae 6; Provisional

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.42  E-value=4e-08  Score=72.80  Aligned_cols=88  Identities=27%  Similarity=0.356  Sum_probs=72.8

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      .|+..+|++|.+...++..-..++.++.|+|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..+.++..|+..
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence            4777899999998754444445668899999999999 88988999999999999999998 778888888889999998


Q ss_pred             CCcccCCCCCC
Q 026255          131 DNYLTGPIPQG  141 (241)
Q Consensus       131 ~N~l~g~~p~~  141 (241)
                      +|.+. ++|..
T Consensus       132 ~na~~-eid~d  141 (177)
T KOG4579|consen  132 ENARA-EIDVD  141 (177)
T ss_pred             CCccc-cCcHH
Confidence            88877 55543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=1e-08  Score=93.72  Aligned_cols=109  Identities=23%  Similarity=0.311  Sum_probs=84.5

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ++++.++.|+|++|++...  +.+..+++|++|||+.|.+. .+|..-..--.|+.|.+++|.++ .+ ..+.++.+|+.
T Consensus       184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~  258 (1096)
T KOG1859|consen  184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYG  258 (1096)
T ss_pred             HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhc
Confidence            4477899999999999874  37889999999999999998 67653222234999999999998 44 35789999999


Q ss_pred             EeccCCcccCC--CCCCCccCccCcccccCCCCCCC
Q 026255          127 FNVSDNYLTGP--IPQGKQFATFDNTSFDANSGLCG  160 (241)
Q Consensus       127 L~l~~N~l~g~--~p~~~~~~~l~~~~~~~n~~lc~  160 (241)
                      ||+++|-+.+-  +-....+..+..+.++|||..|.
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            99999988742  11123345667788999998884

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.40  E-value=1.5e-07  Score=80.09  Aligned_cols=86  Identities=34%  Similarity=0.480  Sum_probs=35.7

Q ss_pred             cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCC----chh
Q 026255           50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRI----PQQ  117 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~  117 (241)
                      ++|+.|++++|.+++.    ++..+..+.+|+.|++++|.+++.    ++..+...++|+.|++++|.+++..    +..
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            3445555555554421    122233344455555555544421    1222233344555555555444221    112


Q ss_pred             HhhccccceEeccCCccc
Q 026255          118 LVELTFLEFFNVSDNYLT  135 (241)
Q Consensus       118 l~~l~~L~~L~l~~N~l~  135 (241)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            223344555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.37  E-value=1.8e-07  Score=82.51  Aligned_cols=81  Identities=38%  Similarity=0.621  Sum_probs=55.8

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      +|+.|++++|.+.. +|..+..+++|+.|++++|+++ .+|...+..+.|+.|++++|+++ .+|........|+.+.++
T Consensus       141 nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchhh-hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            67777777777755 4455677777777777777777 66665556677777777777777 666655455557777777


Q ss_pred             CCcc
Q 026255          131 DNYL  134 (241)
Q Consensus       131 ~N~l  134 (241)
                      +|+.
T Consensus       218 ~N~~  221 (394)
T COG4886         218 NNSI  221 (394)
T ss_pred             CCcc
Confidence            7743

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.36  E-value=2.8e-07  Score=81.21  Aligned_cols=144  Identities=25%  Similarity=0.346  Sum_probs=87.6

Q ss_pred             cccccccCCCCcccc--cccceeE--EEEEeecccccccCc--cCcCccEEEccCCCCCccchhhhcCCCCCceEecccC
Q 026255           11 YLQDVLFPYGQVSSN--VLGTYDY--SMTMNSKGRMMTYNK--IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN   84 (241)
Q Consensus        11 ~L~~~~~~~~~l~~~--~~~~~~~--~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N   84 (241)
                      .|+.++++.|++...  .+.....  .+.+....+......  .+++|+.|++++|++.. +|........|+++.+++|
T Consensus       141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNN  219 (394)
T ss_pred             hcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCC
Confidence            566667777766653  2222111  122222222111111  45667777888887765 5555455566777777777


Q ss_pred             cCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255           85 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus        85 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l  158 (241)
                      .+. ..+..+..+.++..+.+.+|++. .++..+..+++++.|++++|.++ .++....+..+..+++++|...
T Consensus       220 ~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-ccccccccCccCEEeccCcccc
Confidence            544 45556677777777777777776 44666777777888888888877 4444556667777777776544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.32  E-value=7.8e-08  Score=81.89  Aligned_cols=88  Identities=27%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCC---CceEecccCcCCC----CCccccCCC-CccceeeccCCcCCCC----Cch
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKG---LQVLNLHNNNLQG----HIPSCLGNL-TNLESLDLSNNKFSGR----IPQ  116 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~---L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~p~  116 (241)
                      +++|+.|++++|.+.+..+..+..+..   |+.|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            456777777777776545555544444   7777777776652    122234444 6667777777776632    222


Q ss_pred             hHhhccccceEeccCCcccC
Q 026255          117 QLVELTFLEFFNVSDNYLTG  136 (241)
Q Consensus       117 ~l~~l~~L~~L~l~~N~l~g  136 (241)
                      .+..++.|++|++++|.+++
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         160 ALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHhCCCcCEEECcCCCCch
Confidence            34444566777777666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1e-06  Score=52.65  Aligned_cols=36  Identities=42%  Similarity=0.637  Sum_probs=16.2

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ   87 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~   87 (241)
                      +|++|++++|+|+. +|+.+++|++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            34455555555543 3333445555555555555444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.20  E-value=1.7e-06  Score=51.72  Aligned_cols=40  Identities=50%  Similarity=0.738  Sum_probs=33.9

Q ss_pred             CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc
Q 026255           74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP  115 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  115 (241)
                      ++|++|++++|+++ .+|..++++++|+.|++++|+++ .++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence            47999999999999 77878999999999999999998 443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.20  E-value=1.1e-07  Score=70.59  Aligned_cols=93  Identities=22%  Similarity=0.323  Sum_probs=71.5

Q ss_pred             cCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255           45 YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL  124 (241)
Q Consensus        45 ~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  124 (241)
                      |...++.++.|+|++|.|+. +|.++..++.|+.|+++.|.+. ..|.-+..+.++..|+..+|.+. ++|..+.--...
T Consensus        72 ft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~  148 (177)
T KOG4579|consen   72 FTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLP  148 (177)
T ss_pred             Hhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccH
Confidence            33346678999999999987 7888999999999999999999 78888888999999999999988 777653322223


Q ss_pred             ceEeccCCcccCCCCC
Q 026255          125 EFFNVSDNYLTGPIPQ  140 (241)
Q Consensus       125 ~~L~l~~N~l~g~~p~  140 (241)
                      ...++.++.+.+.-+.
T Consensus       149 al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  149 ALIKLGNEPLGDETKK  164 (177)
T ss_pred             HHHHhcCCcccccCcc
Confidence            3445566666655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.19  E-value=2.1e-07  Score=83.12  Aligned_cols=105  Identities=28%  Similarity=0.437  Sum_probs=58.6

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC----------------
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG----------------  112 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----------------  112 (241)
                      +..|+.+||+.|+++. .|..+..++ |+.|-+++|+++ .+|..++.+..|..||.+.|.+..                
T Consensus       120 L~~lt~l~ls~NqlS~-lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  120 LEALTFLDLSSNQLSH-LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hhHHHHhhhccchhhc-CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence            3445555555555543 444444444 555555555555 455555544555555555554441                


Q ss_pred             ------CCchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccCCCCC
Q 026255          113 ------RIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSGL  158 (241)
Q Consensus       113 ------~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~l  158 (241)
                            .+|..+..++ |..||++.|+++ .+|. ...+..+..+.++.||..
T Consensus       197 rRn~l~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  197 RRNHLEDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhhhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence                  3444444333 666777777777 4443 355677777888888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=9.4e-07  Score=76.73  Aligned_cols=127  Identities=24%  Similarity=0.303  Sum_probs=76.9

Q ss_pred             CCCCccccccccCCCCcccccc----cceeE--EEEEeecccccccCc------cCcCccEEEccCCCCCccchhhhcCC
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL----GTYDY--SMTMNSKGRMMTYNK------IPDILTGIILSNNRFDEAIPASISNL   73 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~----~~~~~--~~~~~~~~~~~~~~~------~~~~L~~L~L~~n~i~~~~p~~~~~l   73 (241)
                      +..|++|+.|.++.|++..-..    .+...  .+.++..++  ++..      ..++|..|+|..|..-..-.....-+
T Consensus       168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl--s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~  245 (505)
T KOG3207|consen  168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL--SWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL  245 (505)
T ss_pred             HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC--CHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence            3457788888888888864222    11111  122222222  2222      25678888888884323233334456


Q ss_pred             CCCceEecccCcCCCCCc--cccCCCCccceeeccCCcCCCC-Cchh-----HhhccccceEeccCCccc
Q 026255           74 KGLQVLNLHNNNLQGHIP--SCLGNLTNLESLDLSNNKFSGR-IPQQ-----LVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----l~~l~~L~~L~l~~N~l~  135 (241)
                      ..|+.|||++|++- ..+  ...+.++.|..|+++.+.+... +|+.     ...+++|++|++..|++.
T Consensus       246 ~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  246 QTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            67888888888876 344  3466778888888888877632 2322     344678888888888875

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.03  E-value=7.2e-06  Score=78.93  Aligned_cols=86  Identities=29%  Similarity=0.376  Sum_probs=57.5

Q ss_pred             CcCccEEEccCCC--CCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           49 PDILTGIILSNNR--FDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~--i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      .+.|++|-+..|.  +.....+.|..++.|+.|||++|.--+.+|..++.+.+|++|++++..+. .+|..+.++..|.+
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY  622 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence            3356666666664  44444455666777777777776655577777777777777777777776 67777777777777


Q ss_pred             EeccCCccc
Q 026255          127 FNVSDNYLT  135 (241)
Q Consensus       127 L~l~~N~l~  135 (241)
                      ||+..+.-.
T Consensus       623 Lnl~~~~~l  631 (889)
T KOG4658|consen  623 LNLEVTGRL  631 (889)
T ss_pred             ecccccccc
Confidence            777765433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.86  E-value=4.1e-06  Score=74.49  Aligned_cols=83  Identities=31%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh-Hhhccccce
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEF  126 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~  126 (241)
                      .+.+|++|++++|.|+.+.+  +..++.|+.|++++|.++ .+.. +..+..|+.+++++|.+...-+ . ...+.+++.
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~  190 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLDLSYNRIVDIEN-DELSELISLEE  190 (414)
T ss_pred             hhhcchheeccccccccccc--hhhccchhhheeccCcch-hccC-CccchhhhcccCCcchhhhhhh-hhhhhccchHH
Confidence            36677778888888766433  556667777888888777 4433 4557777777888887773322 1 356666777


Q ss_pred             EeccCCccc
Q 026255          127 FNVSDNYLT  135 (241)
Q Consensus       127 L~l~~N~l~  135 (241)
                      +.+.+|.+.
T Consensus       191 l~l~~n~i~  199 (414)
T KOG0531|consen  191 LDLGGNSIR  199 (414)
T ss_pred             HhccCCchh
Confidence            777776664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=5.1e-06  Score=73.93  Aligned_cols=105  Identities=27%  Similarity=0.317  Sum_probs=78.7

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+.+++.|++.+|.|.++ ...+..+++|+.|++++|.|+...+  +..++.|+.|++++|.|+ .+. .+..++.|+.
T Consensus        92 ~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~  166 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DIS-GLESLKSLKL  166 (414)
T ss_pred             ccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hcc-CCccchhhhc
Confidence            4477899999999999874 3436789999999999999984443  567788999999999998 443 4566889999


Q ss_pred             EeccCCcccCCCCC-CCccCccCcccccCCC
Q 026255          127 FNVSDNYLTGPIPQ-GKQFATFDNTSFDANS  156 (241)
Q Consensus       127 L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~  156 (241)
                      +++++|.+...-+. ...+..+..+.+.+|.
T Consensus       167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             ccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            99999999854441 2444455555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.75  E-value=2.4e-05  Score=75.45  Aligned_cols=90  Identities=30%  Similarity=0.392  Sum_probs=78.2

Q ss_pred             cccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcc
Q 026255           43 MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT  122 (241)
Q Consensus        43 ~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  122 (241)
                      ..|..-++.|++|||++|.=-+.+|..++.+-+|++|++++..+. .+|..++++..|.+|++..+.-...+|.....+.
T Consensus       564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~  642 (889)
T KOG4658|consen  564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ  642 (889)
T ss_pred             HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcc
Confidence            334455889999999998777789999999999999999999999 9999999999999999999886656777777799


Q ss_pred             ccceEeccCCc
Q 026255          123 FLEFFNVSDNY  133 (241)
Q Consensus       123 ~L~~L~l~~N~  133 (241)
                      +|++|.+..-.
T Consensus       643 ~Lr~L~l~~s~  653 (889)
T KOG4658|consen  643 SLRVLRLPRSA  653 (889)
T ss_pred             cccEEEeeccc
Confidence            99999986543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.66  E-value=8.2e-05  Score=58.78  Aligned_cols=103  Identities=22%  Similarity=0.295  Sum_probs=68.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCch--hHhhccccce
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ--QLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~  126 (241)
                      ..+...+||++|.+.. + +.|..++.|.+|.|.+|+|+..-|.--..+++|+.|.+.+|.|. .+.+  -+..++.|++
T Consensus        41 ~d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccce
Confidence            4567778888888854 2 44677888888888888888555554445677888888888876 3322  3556788888


Q ss_pred             EeccCCcccCCCC----CCCccCccCcccccC
Q 026255          127 FNVSDNYLTGPIP----QGKQFATFDNTSFDA  154 (241)
Q Consensus       127 L~l~~N~l~g~~p----~~~~~~~l~~~~~~~  154 (241)
                      |.+-+|+.+..--    -...++++..++|++
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8888887763210    012345555566654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=2.3e-05  Score=68.35  Aligned_cols=107  Identities=21%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             CcCccEEEccCCCCCcc-chhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc--hhHhhccccc
Q 026255           49 PDILTGIILSNNRFDEA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--QQLVELTFLE  125 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~  125 (241)
                      ++.++.|.|+.|+++-. +......+++|+.|+|..|...+.-.....-+..|+.|||++|++- ..+  .....++.|.
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            44555555555555421 1222344566666666666422222223334556667777777665 233  2345566666


Q ss_pred             eEeccCCcccCC-CCCC------CccCccCcccccCCC
Q 026255          126 FFNVSDNYLTGP-IPQG------KQFATFDNTSFDANS  156 (241)
Q Consensus       126 ~L~l~~N~l~g~-~p~~------~~~~~l~~~~~~~n~  156 (241)
                      .|+++.+.++.. .|+.      ..+.++..+++..|+
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence            666666665531 2222      334555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.47  E-value=5.6e-06  Score=76.28  Aligned_cols=99  Identities=28%  Similarity=0.384  Sum_probs=77.7

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh-HhhccccceEec
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNV  129 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~l  129 (241)
                      .|...+.+.|.+.- ...++.-++.|+.|||++|+++. .. .+..++.|++|||+.|.++ .+|.. ...+. |..|++
T Consensus       165 ~L~~a~fsyN~L~~-mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLVL-MDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHHh-HHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            36667888888854 66778888999999999999983 33 6888999999999999998 66653 22344 999999


Q ss_pred             cCCcccCCCCCCCccCccCcccccCC
Q 026255          130 SDNYLTGPIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus       130 ~~N~l~g~~p~~~~~~~l~~~~~~~n  155 (241)
                      ++|.++ .+-...++.++..++++.|
T Consensus       240 rnN~l~-tL~gie~LksL~~LDlsyN  264 (1096)
T KOG1859|consen  240 RNNALT-TLRGIENLKSLYGLDLSYN  264 (1096)
T ss_pred             cccHHH-hhhhHHhhhhhhccchhHh
Confidence            999988 5555567778888887776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.41  E-value=0.00017  Score=57.03  Aligned_cols=81  Identities=19%  Similarity=0.266  Sum_probs=46.4

Q ss_pred             CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC--CCCCCCccCccCccc
Q 026255           74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG--PIPQGKQFATFDNTS  151 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~~~~~~l~~~~  151 (241)
                      .....+||++|.+. .++ .|..++.|.+|.+.+|+|+..-|.--..++.|..|.+.+|.+..  .+-.....+.+..+.
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            34556667777665 333 25566667777777777765555444445666677777766641  222223445556666


Q ss_pred             ccCCC
Q 026255          152 FDANS  156 (241)
Q Consensus       152 ~~~n~  156 (241)
                      +.|||
T Consensus       120 ll~Np  124 (233)
T KOG1644|consen  120 LLGNP  124 (233)
T ss_pred             ecCCc
Confidence            66665

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.08  E-value=0.0015  Score=57.55  Aligned_cols=12  Identities=8%  Similarity=-0.003  Sum_probs=6.8

Q ss_pred             ccceEeccCCcc
Q 026255          123 FLEFFNVSDNYL  134 (241)
Q Consensus       123 ~L~~L~l~~N~l  134 (241)
                      +|++|++++|..
T Consensus       157 SLk~L~Is~c~~  168 (426)
T PRK15386        157 SLKTLSLTGCSN  168 (426)
T ss_pred             cccEEEecCCCc
Confidence            455666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.74  E-value=0.00044  Score=57.97  Aligned_cols=92  Identities=27%  Similarity=0.274  Sum_probs=66.7

Q ss_pred             ccCccCcCccEEEccCCCCCc--cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc-hhHhh
Q 026255           44 TYNKIPDILTGIILSNNRFDE--AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP-QQLVE  120 (241)
Q Consensus        44 ~~~~~~~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~  120 (241)
                      .+....+.++++||.+|.|+.  .+...+.+|+.|+.|+++.|++...+...-....+|++|-|.+..+...-. ..+..
T Consensus        65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence            334446779999999999975  344557799999999999999985443322356788999888877654332 34556


Q ss_pred             ccccceEeccCCccc
Q 026255          121 LTFLEFFNVSDNYLT  135 (241)
Q Consensus       121 l~~L~~L~l~~N~l~  135 (241)
                      +|.++.|+++.|.+.
T Consensus       145 lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLR  159 (418)
T ss_pred             chhhhhhhhccchhh
Confidence            778888888888554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.69  E-value=0.0011  Score=54.40  Aligned_cols=41  Identities=32%  Similarity=0.455  Sum_probs=18.9

Q ss_pred             cCCCCCceEecccC--cCCCCCccccCCCCccceeeccCCcCC
Q 026255           71 SNLKGLQVLNLHNN--NLQGHIPSCLGNLTNLESLDLSNNKFS  111 (241)
Q Consensus        71 ~~l~~L~~L~Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~  111 (241)
                      ..|++|++|.++.|  ++++.++.....+++|+++++++|++.
T Consensus        62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444555555555  333333333333455555555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.59  E-value=0.0019  Score=52.93  Aligned_cols=87  Identities=20%  Similarity=0.297  Sum_probs=60.1

Q ss_pred             chhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCC--cCCCCCchhHhhccccceEeccCCcccC--CCCCC
Q 026255           66 IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN--KFSGRIPQQLVELTFLEFFNVSDNYLTG--PIPQG  141 (241)
Q Consensus        66 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~  141 (241)
                      +..-...+..|+.|.+.+-.++ ++. .+..+++|+.|.++.|  .+++.++.....+++|++++++.|++.-  .++..
T Consensus        35 ~~gl~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            3333445567777777777776 333 3678899999999999  6666666666677999999999998862  33333


Q ss_pred             CccCccCcccccC
Q 026255          142 KQFATFDNTSFDA  154 (241)
Q Consensus       142 ~~~~~l~~~~~~~  154 (241)
                      ..+..+..+++..
T Consensus       113 ~~l~nL~~Ldl~n  125 (260)
T KOG2739|consen  113 KELENLKSLDLFN  125 (260)
T ss_pred             hhhcchhhhhccc
Confidence            4445555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.57  E-value=0.0027  Score=60.02  Aligned_cols=61  Identities=31%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCC-CCccccCCCCccceeeccCCcCC
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFS  111 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~  111 (241)
                      +++|..||+|+.+++..  ..++.+++|+.|.+.+=.+.. ..-..+.++++|++||+|..+..
T Consensus       172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            44555555555555432  334555555555555444431 11112344555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.45  E-value=0.0057  Score=54.04  Aligned_cols=77  Identities=18%  Similarity=0.349  Sum_probs=45.6

Q ss_pred             ccCcCccEEEccCC-CCCccchhhhcCCCCCceEecccCcCC--CCCccccCCC------------------Cccceeec
Q 026255           47 KIPDILTGIILSNN-RFDEAIPASISNLKGLQVLNLHNNNLQ--GHIPSCLGNL------------------TNLESLDL  105 (241)
Q Consensus        47 ~~~~~L~~L~L~~n-~i~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l------------------~~L~~L~L  105 (241)
                      .++.+|+.|++++| .+.. +|.      +|+.|+++++...  +.+|..+..|                  ++|++|++
T Consensus        91 ~LP~nLe~L~Ls~Cs~L~s-LP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~I  163 (426)
T PRK15386         91 SIPEGLEKLTVCHCPEISG-LPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSL  163 (426)
T ss_pred             hhhhhhhheEccCcccccc-ccc------ccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEe
Confidence            34567777777777 4433 443      3445555554421  1344333222                  47888999


Q ss_pred             cCCcCCCCCchhHhhccccceEeccCCc
Q 026255          106 SNNKFSGRIPQQLVELTFLEFFNVSDNY  133 (241)
Q Consensus       106 s~N~l~~~~p~~l~~l~~L~~L~l~~N~  133 (241)
                      ++|... .+|+.+.  .+|+.|+++.|.
T Consensus       164 s~c~~i-~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        164 TGCSNI-ILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             cCCCcc-cCccccc--ccCcEEEecccc
Confidence            988866 4555443  478889988763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.00079  Score=55.95  Aligned_cols=77  Identities=27%  Similarity=0.335  Sum_probs=58.5

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCcc--ccCCCCccceeeccCCcCCCCCch-----hHhhc
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQ-----QLVEL  121 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~-----~l~~l  121 (241)
                      ++.|++|.|+-|+|+..-|  +..+++|+.|+|..|.|. .+.+  .+.++++|+.|+|..|.-.|.-+.     .+.-+
T Consensus        40 Mp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L  116 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL  116 (388)
T ss_pred             cccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence            7788899999999987533  678888999999999887 3332  467888999999999988776554     34557


Q ss_pred             cccceEe
Q 026255          122 TFLEFFN  128 (241)
Q Consensus       122 ~~L~~L~  128 (241)
                      |+|+.||
T Consensus       117 PnLkKLD  123 (388)
T KOG2123|consen  117 PNLKKLD  123 (388)
T ss_pred             ccchhcc
Confidence            7777765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.07  E-value=0.0015  Score=55.69  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=75.8

Q ss_pred             CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCCchhHh-
Q 026255           49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQLV-  119 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-  119 (241)
                      .+.|+.+.++.|.|...    +-..+..+++|+.|||+.|.++..    +...+..+++|+.|+++++.+...-...+. 
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            56888999999988431    234567889999999999988743    334566788899999999988754433332 


Q ss_pred             ----hccccceEeccCCcccCCCC-----CCCccCccCcccccCCCC
Q 026255          120 ----ELTFLEFFNVSDNYLTGPIP-----QGKQFATFDNTSFDANSG  157 (241)
Q Consensus       120 ----~l~~L~~L~l~~N~l~g~~p-----~~~~~~~l~~~~~~~n~~  157 (241)
                          ..++|+.+.+.+|.++..--     .....+.+..+.++||..
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence                25789999999998863100     012245667778888865

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.86  E-value=0.0026  Score=31.76  Aligned_cols=10  Identities=30%  Similarity=0.255  Sum_probs=3.8

Q ss_pred             cEEEccCCCC
Q 026255           53 TGIILSNNRF   62 (241)
Q Consensus        53 ~~L~L~~n~i   62 (241)
                      ++|||++|+|
T Consensus         3 ~~Ldls~n~l   12 (22)
T PF00560_consen    3 EYLDLSGNNL   12 (22)
T ss_dssp             SEEEETSSEE
T ss_pred             cEEECCCCcC
Confidence            3333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0039  Score=31.11  Aligned_cols=22  Identities=50%  Similarity=0.771  Sum_probs=18.0

Q ss_pred             CCceEecccCcCCCCCccccCCC
Q 026255           75 GLQVLNLHNNNLQGHIPSCLGNL   97 (241)
Q Consensus        75 ~L~~L~Ls~N~l~~~~p~~~~~l   97 (241)
                      +|++|++++|+++ .+|+.|+++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4899999999999 888877653

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.13  E-value=0.018  Score=49.31  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=74.3

Q ss_pred             CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCC----ch
Q 026255           49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRI----PQ  116 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~  116 (241)
                      .+.|++++...|.+...    +...|...+.|+.+.++.|.|.-.    +-..+..+++|+.|||..|-|+..-    ..
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            67899999999988542    334466778899999999987521    2235678899999999999887432    23


Q ss_pred             hHhhccccceEeccCCcccCCCCC------CCccCccCcccccCCC
Q 026255          117 QLVELTFLEFFNVSDNYLTGPIPQ------GKQFATFDNTSFDANS  156 (241)
Q Consensus       117 ~l~~l~~L~~L~l~~N~l~g~~p~------~~~~~~l~~~~~~~n~  156 (241)
                      .+..+++|+.++++++.+...-..      ....+.+..+.+.||.
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence            456678899999999887632110      0124455666666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.11  E-value=0.017  Score=54.80  Aligned_cols=90  Identities=20%  Similarity=0.366  Sum_probs=65.1

Q ss_pred             ccCccCcCccEEEccCCCCCcc-chhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhc
Q 026255           44 TYNKIPDILTGIILSNNRFDEA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVEL  121 (241)
Q Consensus        44 ~~~~~~~~L~~L~L~~n~i~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l  121 (241)
                      .....+|.|+.|.+.+-.+... ......++++|..||+|+.+++ .+ ..++.+++|+.|.+.+=.+.. ..-..+.++
T Consensus       142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L  219 (699)
T KOG3665|consen  142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL  219 (699)
T ss_pred             HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence            3345688899998888776432 2334567899999999999988 44 557888999998887776652 111346678


Q ss_pred             cccceEeccCCccc
Q 026255          122 TFLEFFNVSDNYLT  135 (241)
Q Consensus       122 ~~L~~L~l~~N~l~  135 (241)
                      ++|++||+|.....
T Consensus       220 ~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  220 KKLRVLDISRDKNN  233 (699)
T ss_pred             cCCCeeeccccccc
Confidence            99999999986554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.91  E-value=0.0032  Score=52.46  Aligned_cols=86  Identities=21%  Similarity=0.225  Sum_probs=68.6

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCch--hHhhccccce
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ--QLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~  126 (241)
                      +.+++.|+.-++.++.+  .....|+.|+.|.|+-|.|+..-|  +..++.|++|+|..|.|. .+-+  .+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            45677888889988763  446789999999999999994333  678999999999999998 4433  4668899999


Q ss_pred             EeccCCcccCCCC
Q 026255          127 FNVSDNYLTGPIP  139 (241)
Q Consensus       127 L~l~~N~l~g~~p  139 (241)
                      |-|..|.-.|.-+
T Consensus        93 LWL~ENPCc~~ag  105 (388)
T KOG2123|consen   93 LWLDENPCCGEAG  105 (388)
T ss_pred             HhhccCCcccccc
Confidence            9999998776543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.62  E-value=0.00062  Score=55.19  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      ...+.||++.|++-. ....|+-++.|..|+++.|.+. ..|..++++..+..+++..|..+ ..|.++...+.++++++
T Consensus        42 kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            345556666665532 3344455555566666666665 55555666656666666666655 55666666666666666


Q ss_pred             cCCccc
Q 026255          130 SDNYLT  135 (241)
Q Consensus       130 ~~N~l~  135 (241)
                      -.|.|+
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            555543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.27  E-value=0.024  Score=26.34  Aligned_cols=11  Identities=64%  Similarity=1.002  Sum_probs=3.1

Q ss_pred             cceeeccCCcC
Q 026255          100 LESLDLSNNKF  110 (241)
Q Consensus       100 L~~L~Ls~N~l  110 (241)
                      |+.|++++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            33333333333

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.01  E-value=0.046  Score=45.63  Aligned_cols=86  Identities=28%  Similarity=0.387  Sum_probs=51.2

Q ss_pred             CcCccEEEccCCCCCccchhh----hcCCCCCceEecccCcCCCC----Cc-------cccCCCCccceeeccCCcCCCC
Q 026255           49 PDILTGIILSNNRFDEAIPAS----ISNLKGLQVLNLHNNNLQGH----IP-------SCLGNLTNLESLDLSNNKFSGR  113 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~----~~~l~~L~~L~Ls~N~l~~~----~p-------~~~~~l~~L~~L~Ls~N~l~~~  113 (241)
                      +..++.++||+|.|...-..+    +.+-.+|+..+++.-. +|.    ++       +.+-.+|.|+..+||.|.|...
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            667888889998886543333    3334555555555432 112    12       2244567777777777777766


Q ss_pred             CchhHh----hccccceEeccCCccc
Q 026255          114 IPQQLV----ELTFLEFFNVSDNYLT  135 (241)
Q Consensus       114 ~p~~l~----~l~~L~~L~l~~N~l~  135 (241)
                      .|+.+.    .-..|.+|.+++|.+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC
Confidence            665433    3456777777777653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.94  E-value=0.18  Score=36.56  Aligned_cols=80  Identities=23%  Similarity=0.280  Sum_probs=35.2

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      .+|+.+.+.. .+..+....|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|+.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            3455555553 344444455666666666666554 4433344455555666666654 332122334455666666666


Q ss_pred             cCC
Q 026255          130 SDN  132 (241)
Q Consensus       130 ~~N  132 (241)
                      ..+
T Consensus        89 ~~~   91 (129)
T PF13306_consen   89 PSN   91 (129)
T ss_dssp             TTT
T ss_pred             Ccc
Confidence            543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=92.70  E-value=0.2  Score=41.94  Aligned_cols=86  Identities=23%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             CcCccEEEccCCCCCccchhh----hcCCCCCceEecccCcCCCCCccc-------------cCCCCccceeeccCCcCC
Q 026255           49 PDILTGIILSNNRFDEAIPAS----ISNLKGLQVLNLHNNNLQGHIPSC-------------LGNLTNLESLDLSNNKFS  111 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~----~~~l~~L~~L~Ls~N~l~~~~p~~-------------~~~l~~L~~L~Ls~N~l~  111 (241)
                      ++.|+.++||+|.|....|+.    ++.-+.|.+|.+++|.+.-.--.-             ...-|.|++.+...|++.
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle  170 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE  170 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence            578999999999997766655    456688999999999875211111             123467888888888775


Q ss_pred             CCCchh-----HhhccccceEeccCCccc
Q 026255          112 GRIPQQ-----LVELTFLEFFNVSDNYLT  135 (241)
Q Consensus       112 ~~~p~~-----l~~l~~L~~L~l~~N~l~  135 (241)
                       ..|..     +..-..|+.+.+..|.+.
T Consensus       171 -ngs~~~~a~~l~sh~~lk~vki~qNgIr  198 (388)
T COG5238         171 -NGSKELSAALLESHENLKEVKIQQNGIR  198 (388)
T ss_pred             -cCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence             33321     222235566666666543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.33  E-value=0.14  Score=26.28  Aligned_cols=15  Identities=33%  Similarity=0.357  Sum_probs=7.8

Q ss_pred             CccEEEccCCCCCcc
Q 026255           51 ILTGIILSNNRFDEA   65 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~   65 (241)
                      +|+.|+|++|.|...
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00369        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            455555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.33  E-value=0.14  Score=26.28  Aligned_cols=15  Identities=33%  Similarity=0.357  Sum_probs=7.8

Q ss_pred             CccEEEccCCCCCcc
Q 026255           51 ILTGIILSNNRFDEA   65 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~   65 (241)
                      +|+.|+|++|.|...
T Consensus         3 ~L~~L~L~~N~l~~l   17 (26)
T smart00370        3 NLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCEEECCCCcCCcC
Confidence            455555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.22  E-value=0.045  Score=46.24  Aligned_cols=63  Identities=29%  Similarity=0.340  Sum_probs=47.7

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCcc-ccCCCCccceeeccCCcCC
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFS  111 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~  111 (241)
                      ++.|++|+|+.|.+...+...-..+.+|+.|.|.+..+.+.... .+..+|.++.|+++.|.+.
T Consensus        96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r  159 (418)
T KOG2982|consen   96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR  159 (418)
T ss_pred             CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence            78899999999999765433213567899999999888765544 3567888888888888443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.77  E-value=0.0092  Score=48.56  Aligned_cols=92  Identities=21%  Similarity=0.182  Sum_probs=70.3

Q ss_pred             CccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC
Q 026255           63 DEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK  142 (241)
Q Consensus        63 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~  142 (241)
                      +.+.--.+......+.||++.|++. .+-..|+-+..|..||++.|++. ..|..+.....++.+++..|..+...-+..
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~  108 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQK  108 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence            3333344667788899999999998 56666788889999999999998 889999999999999999998874433445


Q ss_pred             ccCccCcccccCCC
Q 026255          143 QFATFDNTSFDANS  156 (241)
Q Consensus       143 ~~~~l~~~~~~~n~  156 (241)
                      +.+.+...+..+|+
T Consensus       109 k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen  109 KEPHPKKNEQKKTE  122 (326)
T ss_pred             ccCCcchhhhccCc
Confidence            55566656666665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.60  E-value=0.19  Score=25.80  Aligned_cols=14  Identities=64%  Similarity=0.873  Sum_probs=7.9

Q ss_pred             CccceeeccCCcCC
Q 026255           98 TNLESLDLSNNKFS  111 (241)
Q Consensus        98 ~~L~~L~Ls~N~l~  111 (241)
                      ++|+.|++++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.60  E-value=0.19  Score=25.80  Aligned_cols=14  Identities=64%  Similarity=0.873  Sum_probs=7.9

Q ss_pred             CccceeeccCCcCC
Q 026255           98 TNLESLDLSNNKFS  111 (241)
Q Consensus        98 ~~L~~L~Ls~N~l~  111 (241)
                      ++|+.|++++|+++
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34555555555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.21  E-value=0.032  Score=47.13  Aligned_cols=122  Identities=18%  Similarity=0.142  Sum_probs=63.7

Q ss_pred             CCccccccccCCCC-ccccccc------ceeEEEEEeeccccccc-----CccCcCccEEEccCCCC---CccchhhhcC
Q 026255            8 ELRYLQDVLFPYGQ-VSSNVLG------TYDYSMTMNSKGRMMTY-----NKIPDILTGIILSNNRF---DEAIPASISN   72 (241)
Q Consensus         8 ~l~~L~~~~~~~~~-l~~~~~~------~~~~~~~~~~~~~~~~~-----~~~~~~L~~L~L~~n~i---~~~~p~~~~~   72 (241)
                      +-+.|..++++|.. ++.+.+.      ...+.++++|..+....     ..+-++|+.|+|++..=   ...+..--..
T Consensus       232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            33455566666543 2322221      13344555555443222     23455677777766431   1112222345


Q ss_pred             CCCCceEecccCc-CCCCCccccCCCCccceeeccCCcCCCCCchhH---hhccccceEeccC
Q 026255           73 LKGLQVLNLHNNN-LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLEFFNVSD  131 (241)
Q Consensus        73 l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~l~~  131 (241)
                      +++|..|||+.|. ++...-..|.+++.|++|.++.+..  .+|+.+   ...|+|.+||+.+
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence            6777777777654 3333344556677777777776653  355543   3456777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.52  E-value=0.31  Score=35.31  Aligned_cols=79  Identities=24%  Similarity=0.292  Sum_probs=47.7

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ..+|+.+.+.++ +.......|..+..++.+.+.+ .+.......|..+.+|+.+++..+ +...-...|.++ .|+.+.
T Consensus        34 ~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~  109 (129)
T PF13306_consen   34 CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEIN  109 (129)
T ss_dssp             -TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE
T ss_pred             cccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEE
Confidence            557889999875 7666667788888899999976 454345566777899999999776 542333456665 788877


Q ss_pred             ccC
Q 026255          129 VSD  131 (241)
Q Consensus       129 l~~  131 (241)
                      +..
T Consensus       110 ~~~  112 (129)
T PF13306_consen  110 IPS  112 (129)
T ss_dssp             -TT
T ss_pred             ECC
Confidence            665

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.48  E-value=0.14  Score=25.80  Aligned_cols=13  Identities=69%  Similarity=1.009  Sum_probs=5.2

Q ss_pred             ccceeeccCCcCC
Q 026255           99 NLESLDLSNNKFS  111 (241)
Q Consensus        99 ~L~~L~Ls~N~l~  111 (241)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444555555443

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.86  E-value=0.1  Score=44.14  Aligned_cols=86  Identities=24%  Similarity=0.249  Sum_probs=54.9

Q ss_pred             CccEEEccCCCCCc-cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCc-CCCC-CchhHhhccccceE
Q 026255           51 ILTGIILSNNRFDE-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK-FSGR-IPQQLVELTFLEFF  127 (241)
Q Consensus        51 ~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~-~p~~l~~l~~L~~L  127 (241)
                      .++.|||+...|+. ..-..++.+.+|+.|.+.++++...+-..++.-.+|+.++++... ++.. ..--+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47777777777753 233445667777778888887776666667766777777777653 3311 11234567777777


Q ss_pred             eccCCcccC
Q 026255          128 NVSDNYLTG  136 (241)
Q Consensus       128 ~l~~N~l~g  136 (241)
                      +++.+.++.
T Consensus       266 NlsWc~l~~  274 (419)
T KOG2120|consen  266 NLSWCFLFT  274 (419)
T ss_pred             CchHhhccc
Confidence            777766543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.35  E-value=0.63  Score=24.15  Aligned_cols=17  Identities=35%  Similarity=0.804  Sum_probs=8.4

Q ss_pred             ccceeeccCCcCCCCCch
Q 026255           99 NLESLDLSNNKFSGRIPQ  116 (241)
Q Consensus        99 ~L~~L~Ls~N~l~~~~p~  116 (241)
                      +|+.|++++|+++ .+|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            3455555555554 4443

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.09  E-value=1.3  Score=22.91  Aligned_cols=14  Identities=29%  Similarity=0.340  Sum_probs=7.8

Q ss_pred             cCccEEEccCCCCC
Q 026255           50 DILTGIILSNNRFD   63 (241)
Q Consensus        50 ~~L~~L~L~~n~i~   63 (241)
                      .+|+.|+|++|.|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34555666666554

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=81.04  E-value=2.1  Score=31.31  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=8.0

Q ss_pred             eehhhhhhhHHHHHHH
Q 026255          197 LTGYAGGLVAGLVLGF  212 (241)
Q Consensus       197 ~~~~~~~~~~~~~~~~  212 (241)
                      .+++++|+++|++..+
T Consensus        66 i~~Ii~gv~aGvIg~I   81 (122)
T PF01102_consen   66 IIGIIFGVMAGVIGII   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             eeehhHHHHHHHHHHH
Confidence            3445555555554433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-15
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-15
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-10

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 22  VSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXX 81
           ++S V G +  S T ++ G MM  +   ++L+G I          P  I ++        
Sbjct: 612 ITSRVYGGHT-SPTFDNNGSMMFLDMSYNMLSGYI----------PKEIGSMPYLFILNL 660
Query: 82  XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                   IP  +G+L  L  LDLS+NK  GRIPQ +  LT L   ++S+N L+GPIP+ 
Sbjct: 661 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Query: 142 KQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNEDHTEGSAESL----FSGA 190
            QF TF    F  N GLCG PL + C+   A     H       L    F GA
Sbjct: 721 GQFETFPPAKFLNNPGLCGYPLPR-CDPSNADGYAHHQRSHGRRLENLYFQGA 772

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 78/156 (50%), Gaps = 16/156 (10%)
Query: 22  VSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKXXXXXXX 81
           ++S V G +  S T ++ G MM  +   ++L+G I          P  I ++        
Sbjct: 615 ITSRVYGGH-TSPTFDNNGSMMFLDMSYNMLSGYI----------PKEIGSMPYLFILNL 663
Query: 82  XXXXXXXXIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                   IP  +G+L  L  LDLS+NK  GRIPQ +  LT L   ++S+N L+GPIP+ 
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Query: 142 KQFATFDNTSFDANSGLCGRPLSKGCESGEAPTNED 177
            QF TF    F  N GLCG PL + C+    P+N D
Sbjct: 724 GQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 38/65 (58%)
Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
           NL  LDL NN+  G +PQ L +L FL   NVS N L G IPQG     FD +++  N  L
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 159 CGRPL 163
           CG PL
Sbjct: 305 CGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-19
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-20
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  174 bits (444), Expect = 1e-50
 Identities = 53/147 (36%), Positives = 73/147 (49%), Gaps = 1/147 (0%)

Query: 39  KGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT 98
            G           +  + +S N     IP  I ++  L +LNL +N++ G IP  +G+L 
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
            L  LDLS+NK  GRIPQ +  LT L   ++S+N L+GPIP+  QF TF    F  N GL
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740

Query: 159 CGRPLSKGCESGEAPTNEDHTEGSAES 185
           CG PL + C+   A     H       
Sbjct: 741 CGYPLPR-CDPSNADGYAHHQRSHHHH 766

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  115 bits (289), Expect = 2e-29
 Identities = 38/89 (42%), Positives = 48/89 (53%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L NN F   IP ++SN   L  L+L  N L G IPS LG+L+ L  L L  N   
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           G IPQ+L+ +  LE   +  N LTG IP 
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPS 484

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  112 bits (282), Expect = 1e-28
 Identities = 35/89 (39%), Positives = 49/89 (55%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS N     IP+S+ +L  L+ L L  N L+G IP  L  +  LE+L L  N  +
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           G IP  L   T L + ++S+N LTG IP+
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (275), Expect = 1e-27
 Identities = 36/90 (40%), Positives = 48/90 (53%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +IL  N     IP+ +SN   L  ++L NN L G IP  +G L NL  L LSNN FS
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
           G IP +L +   L + +++ N   G IP  
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (274), Expect = 2e-27
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L  N  +  IP  +  +K L+ L L  N+L G IPS L N TNL  + LSNN+ +
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           G IP+ +  L  L    +S+N  +G IP
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIP 531

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (261), Expect = 9e-26
 Identities = 36/91 (39%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 52  LTGIILSNNRFDEAIPASISN--LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           L  + LS+N F   I  ++       LQ L L NN   G IP  L N + L SL LS N 
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
            SG IP  L  L+ L    +  N L G IPQ
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 5e-25
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKF 110
           LTG+ LS N F  A+P    +   L+ L L +NN  G +P   L  +  L+ LDLS N+F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 111 SGRIPQQLVELTF-LEFFNVSDNYLTGPIPQG 141
           SG +P+ L  L+  L   ++S N  +GPI   
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.8 bits (247), Expect = 6e-24
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 52  LTGIILSNNRFDEAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + L+ N+F   IP  +S     L  L+L  N+  G +P   G+ + LESL LS+N F
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 111 SGRIPQQ-LVELTFLEFFNVSDNYLTGPIP 139
           SG +P   L+++  L+  ++S N  +G +P
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELP 360

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +S+N F   IP  + +   LQ L++  N L G     +   T L+ L++S+N+F 
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           G IP     L  L++ ++++N  TG IP
Sbjct: 261 GPIPPLP--LKSLQYLSLAENKFTGEIP 286

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  I LSNNR    IP  I  L+ L +L L NN+  G+IP+ LG+  +L  LDL+ N F+
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           G IP  + + +      ++ N++ G   
Sbjct: 552 GTIPAAMFKQSGK----IAANFIAGKRY 575

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 5e-23
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNNKF 110
           L  + +S+N+F   IP     LK LQ L+L  N   G IP  L G    L  LDLS N F
Sbjct: 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
            G +P      + LE   +S N  +G +P 
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPM 336

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 95.0 bits (237), Expect = 1e-22
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 52  LTGIILSNNRFDEAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLT-NLESLDLSNNK 109
           L  + LS+N F   +P  ++  ++GL+VL+L  N   G +P  L NL+ +L +LDLS+N 
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

Query: 110 FSGRIPQQL--VELTFLEFFNVSDNYLTGPIP 139
           FSG I   L       L+   + +N  TG IP
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.0 bits (232), Expect = 7e-22
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 52  LTGIILSNNRFDEAIPASI---SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           L  + LS N    A             L+ L +  N + G +   +    NLE LD+S+N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN 210

Query: 109 KFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
            FS  IP  L + + L+  ++S N L+G   +
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.0 bits (224), Expect = 6e-21
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNK 109
           L  + LSN+  + ++         L  L+L  N+L G + +   LG+ + L+ L++S+N 
Sbjct: 79  LESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137

Query: 110 FSGRIP-QQLVELTFLEFFNVSDNYLTGPIP 139
                     ++L  LE  ++S N ++G   
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCL---GNLTNLESLDLSN 107
           L  + +S+N  D     S    L  L+VL+L  N++ G              L+ L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           NK SG +   +     LEF +VS N  +  IP
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIP 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 52  LTGIILSNNRFDE---AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           +T I LS+   +    A+ +S+ +L GL+ L L N+++ G +        +L SLDLS N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRN 110

Query: 109 KFSGRIP--QQLVELTFLEFFNVSDNYLTGPIP 139
             SG +     L   + L+F NVS N L  P  
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.2 bits (209), Expect = 8e-19
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LSNN F   IPA + + + L  L+L+ N   G IP+ +       S  ++ N  +
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIA 571

Query: 112 GRIPQQLVELTFLEFFNVSDNY--LTGPIP 139
           G+    +      +  + + N     G   
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 76  LQVLNLHNNNLQ---GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDN 132
           +  ++L +  L      + S L +LT LESL LSN+  +G +         L   ++S N
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110

Query: 133 YLTGPIPQGKQFA 145
            L+GP+       
Sbjct: 111 SLSGPVTTLTSLG 123

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 96  NLTNLESLDLSNNKFS---GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
               + S+DLS+   +     +   L+ LT LE   +S++++ G +  
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG 95

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  141 bits (359), Expect = 3e-41
 Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS N  +        + K  Q ++L  N+L   +   +G   NL  LDL NN+  
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS 164
           G +PQ L +L FL   NVS N L G IPQG     FD +++  N  LCG PL 
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  110 bits (278), Expect = 3e-29
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +++     AIP  +S +K L  L+   N L G +P  + +L NL  +    N+ S
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 112 GRIPQQLVELTFL-EFFNVSDNYLTGPIPQ 140
           G IP      + L     +S N LTG IP 
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (272), Expect = 2e-28
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 52  LTGIILSN-NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + +   N     IP +I+ L  L  L + + N+ G IP  L  +  L +LD S N  
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           SG +P  +  L  L       N ++G IP
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAIP 166

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.4 bits (215), Expect = 3e-20
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSN-NKFSGR 113
             N  +   +  + +    +  L+L   NL     IPS L NL  L  L +   N   G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 114 IPQQLVELTFLEFFNVSDNYLTGPIP 139
           IP  + +LT L +  ++   ++G IP
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 65  AIPASISNLKGLQ----VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR--IPQQL 118
            I   + N   L       +  N    G +         + +LDLS         IP  L
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 119 VELTFLEFFNVSD-NYLTGPIP 139
             L +L F  +   N L GPIP
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIP 94

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 3e-21
 Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L +N FDE       +L  L++++L  NNL     S   N  +L+SL+L  N  +
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 112 GRIPQQL-VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL-----CGRPLS 164
               +        L   ++  N           F  + N +      L     C  P  
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPH 656

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.6 bits (202), Expect = 6e-18
 Identities = 17/88 (19%), Positives = 35/88 (39%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           +T + L++N+      A+ +    L  L++  N +    P     L  L+ L+L +N+ S
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
               +     T L   ++  N +     
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKN 114

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 8e-18
 Identities = 23/89 (25%), Positives = 33/89 (37%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + +  N   +  P     L  L+VLNL +N L           TNL  L L +N   
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
                  V+   L   ++S N L+     
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 2e-17
 Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 12/119 (10%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           + +N I  +          L  + L +N   +    + +    L  L+L +N++Q    +
Sbjct: 56  VGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
                 NL +LDLS+N  S       V+L  L+   +S+N +     +      F N+S
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE--LDIFANSS 172

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.5 bits (194), Expect = 6e-17
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKF 110
           L  + L+ N+  +    + S L  L+VL+L  N +   +       L N+  + LS NK+
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
                     +  L+   +    L         F    N
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.1 bits (193), Expect = 9e-17
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 52  LTGIILSNNRFDEAIPAS-ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + L  N   + +       L+ +  + L  N       +    + +L+ L L     
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 111 SG--RIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
                 P     L  L   ++S+N +      
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L  +         +  L  L +LNL +N           +L  L+ +DL  N  +     
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQ 140
                  L+  N+  N +T    +
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNN---------NLQGHIPSCLGNLTNLES 102
           L    L  N        S+  L  ++ LNL  +         +L          L  LE 
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 103 LDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
           L++ +N   G        L  L++ ++S+++ +      + F +  ++ 
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           L  ++LSNN+        +       L+ L L +N ++   P C   +  L  L L+N +
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

Query: 110 FSGRIPQQL---VELTFLEFFNVSDNYLTGPIP 139
               + ++L   +  T +   ++S++ L+    
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 52  LTGIILSNNRFDEAIPASIS---NLKGLQVLNLHNNNLQGHIPSCLGNL--TNLESLDLS 106
           L G+ L+N +   ++   +        ++ L+L N+ L     +    L  TNL  LDLS
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 107 NNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
            N  +         L  LE+F +  N +     
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.3 bits (178), Expect = 7e-15
 Identities = 24/109 (22%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           +  + LSN++       +   LK   L +L+L  NNL          L  LE   L  N 
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
                   L  L  + + N+  ++    I         D+ SF     L
Sbjct: 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISL-ASLPKIDDFSFQWLKCL 331

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
            S+ +  + +P  +     + VLNL +N L+    +     + L SLD+  N  S   P+
Sbjct: 11  CSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67

Query: 117 QLVELTFLEFFNVSDNYLTGPIP 139
              +L  L+  N+  N L+    
Sbjct: 68  LCQKLPMLKVLNLQHNELSQLSD 90

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + LS N  +     S + L  L+   L  NN+Q      L  L N+  L+L  +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309

Query: 112 GRI---------PQQLVELTFLEFFNVSDNYLTGPIPQ 140
             I               L  LE  N+ DN + G    
Sbjct: 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 20/118 (16%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFD--EAIPASISNLKGLQVLNLHNNNLQGHI 90
           ++YNK   +          L  ++L        ++ P+    L+ L +L+L NNN+    
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 91  PSCLGNLTNLESLDLSNNKFS--------GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
              L  L  LE LDL +N  +        G     L  L+ L   N+  N       +
Sbjct: 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH--IPSCLGNLTN--LESLDLSN 107
           L  + + +N          + L  L+ L+L N+             +L +  L  L+L+ 
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
           NK S         L  LE  ++  N +   +   
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
            T   +S     +    S   LK L+ LN+ +N++ G   +    L NL+ L LSN+  S
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

Query: 112 GRIPQQLV----ELTFLEFFNVSDNYLTGPIPQ 140
            R            + L   N++ N ++     
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 26/113 (23%), Positives = 37/113 (32%), Gaps = 15/113 (13%)

Query: 43  MTYNKIPDI----------LTGIILSNNR--FDEAIPASISNL--KGLQVLNLHNNNLQG 88
           M  N IP I          L  + LSN+          +  +L    L +LNL  N +  
Sbjct: 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK 395

Query: 89  HIPSCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQ 140
                   L +LE LDL  N+    +  Q    L  +    +S N        
Sbjct: 396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN 448

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 76  LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            +V +  +  L   +P  L   TN+  L+L++N+            + L   +V  N ++
Sbjct: 6   HEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 136 GPIPQ 140
              P+
Sbjct: 63  KLEPE 67

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + LS  + ++  P + ++L  LQVLN+ +NN           L +L+ LD S N   
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 531

Query: 112 GRIPQQLVEL-TFLEFFNVSDNYLTGPIP 139
               Q+L    + L F N++ N       
Sbjct: 532 TSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 2e-19
 Identities = 19/93 (20%), Positives = 32/93 (34%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P     + LS N        S  +   LQVL+L    +Q        +L++L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           N            L+ L+     +  L      
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 3e-19
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 1/90 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS          +  +L  L  L L  N +Q         L++L+ L       +
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTG-PIPQ 140
                 +  L  L+  NV+ N +    +P+
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 52  LTGIILSNNRFDEAI-PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + ++ N F E   P   + L+ L  L+L    L+   P+   +L++L+ L++S+N F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
                     L  L+  + S N++     Q
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 11/109 (10%)

Query: 43  MTYNKIPDI---------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS 92
           +++N +  +         L  +   ++   +    S+  +L+ L  L++ + + +     
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 93  CLGNLTNLESLDLSNNKFSGRI-PQQLVELTFLEFFNVSDNYLTGPIPQ 140
               L++LE L ++ N F     P    EL  L F ++S   L    P 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.0 bits (177), Expect = 8e-15
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 52  LTGIILSNNR--FDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           L  + LS N   F      S      L+ L+L  N +   + S    L  LE LD  ++ 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407

Query: 110 FSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQ 140
                     + L  L + ++S  +       
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 52  LTGIILSNNRFDEA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLE----SLDLS 106
           L  + +++N      +P   SNL  L+ L+L +N +Q    + L  L  +     SLDLS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 107 NNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
            N  +   P    E+  L    + +N+ +  + + 
Sbjct: 186 LNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKT 219

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQV----LNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           L  + LS+N+        +  L  + +    L+L  N +    P     +  L  L L N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRN 209

Query: 108 NKFSGRIPQQLVE-LTFLEFFNVSDNYLTG 136
           N  S  + +  ++ L  LE   +       
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK-- 109
              + L N +F +     + +LK      L   + +G       +L +LE LDLS N   
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLK-----RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS 360

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           F G   Q     T L++ ++S N +      
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 8e-08
 Identities = 9/93 (9%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 47  KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL---HNNNLQGHIPSCLGNLTNLESL 103
           ++  ++ G   +    ++   +++  L  L +      + +     I      LTN+ S 
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 104 DLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136
            L +                 +   + +     
Sbjct: 288 SLVSVTIERVKD--FSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 46  NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLD 104
           +++P +   + LS N  +   P +   ++ L  L L NN    ++   C+  L  LE   
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 105 LSNNKFSGR------IPQQLVELTFLEFFNVSDNYL 134
           L   +F             L  L  L        YL
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNL-KGLQVLNLHNNNLQGHIPSC--LGNLTNLESLDLSNN 108
           L  +  S N    +    + +    L  LNL  N+          L  + +   L +   
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579

Query: 109 KFSGRIPQQLVELTFLEF 126
           +     P     +  L  
Sbjct: 580 RMECATPSDKQGMPVLSL 597

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 84.7 bits (210), Expect = 5e-19
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHN------NNLQGHIPSCLGNLTNLESLDL 105
           L GI LS N F +  P    N   L+   + N      N      P  +    +L  L +
Sbjct: 515 LVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 106 SNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
            +N     + +++     +   ++ DN         
Sbjct: 574 GSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 52  LTGIILSNNRFD-------EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLD 104
           ++ I  S N          + +  +      +  +NL NN +           + L S++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 105 LSNNKFSG-------RIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           L  N  +           +       L   ++  N LT  +    +  T   
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPY 514

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.5 bits (194), Expect = 6e-17
 Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           I +          +  +       NLK L  + ++N      +P+ L  L  ++ ++++ 
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 108 NKF--------SGRIPQQLVELTFLEFFNVSDNYL-TGPIP 139
           N+           +          ++   +  N L T P+ 
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 10/98 (10%)

Query: 52  LTGIILSNNRFDEA--------IPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLES 102
           +  I ++ NR              A     + +Q++ +  NNL+   + + L  +  L  
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 103 LDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           L+   N+  G++P        L   N++ N +T     
Sbjct: 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPAN 371

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +    N+  E    +  +   L  LNL  N +     +  G    +E+L  ++NK  
Sbjct: 332 LGMLECLYNQL-EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 112 GRIPQ--QLVELTFLEFFNVSDNYLTGPIP 139
             IP       ++ +   + S N +     
Sbjct: 391 Y-IPNIFDAKSVSVMSAIDFSYNEIGSVDG 419

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 15/103 (14%)

Query: 52  LTGIILSNNRFDE-------AIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESL 103
           L+ I L  N   E           +  N   L  ++L  N L           L  L  +
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGI 518

Query: 104 DLSNNKFSGRIPQQLVELTFLEFF------NVSDNYLTGPIPQ 140
           DLS N FS   P Q +  + L+ F      +   N      P+
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 20/104 (19%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH-------------------IPS 92
            T I   +N     +  ++  L  L+   + N+                           
Sbjct: 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136
              NL +L  +++ N     ++P  L  L  ++  NV+ N    
Sbjct: 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS 287

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 10/97 (10%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNK 109
           L  + L+ N+  E         + ++ L+  +N L+  IP+     +++ + ++D S N+
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNE 413

Query: 110 FSG-------RIPQQLVELTFLEFFNVSDNYLTGPIP 139
                      +     +   +   N+S+N ++    
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.6 bits (176), Expect = 1e-14
 Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 6/119 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSN 107
           +TG+ L        +P +I  L  L+VL L ++  +       P  +    + E      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 108 NKFSGRIPQQLVELTF--LEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS 164
             +            F  L    ++ +     I +  +    D      ++ +     +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 50  DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
            I        NR     P  I+    L  L + +N+++  +   +    N+  LD+ +N 
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNP 598

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLT 135
                   +        + +  +   
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 69  SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG----RIPQQLVELTFL 124
           S+++   +  L+L      G +P  +G LT LE L L ++          P+ +      
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 125 EFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
           E       +             F +   D  +  
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 20/109 (18%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L    ++++   ++I  S         +   +NN+   +   +  LT L    + N+ F 
Sbjct: 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFV 219

Query: 112 GRIPQQLVELTFLEFFN-------------------VSDNYLTGPIPQG 141
                +  E    E+                     V +      +P  
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF 268

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.2 bits (208), Expect = 8e-19
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 15/115 (13%)

Query: 45  YNKIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTN 99
            +                   +  E    S SNLK L  + L+N      +P  L +L  
Sbjct: 457 NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

Query: 100 LESLDLSNNKFSG---------RIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFA 145
           L+SL+++ N+            R+         ++ F +  N L    P      
Sbjct: 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 78.4 bits (193), Expect = 7e-17
 Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 15/129 (11%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNL------HNNNLQGHIPSCLGNLTNLESLDL 105
           L+ + +S N F  + P    N   L+   +        N +    P+ +    +L  L +
Sbjct: 755 LSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 106 SNNKFSGRIPQQLVELTFLEFFNVSDNYLT-GPIPQGKQFATFDNTSFDANSGLCGRPLS 164
            +N     + ++L     L   +++DN      +     +          +         
Sbjct: 814 GSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD----KTQDI 866

Query: 165 KGCESGEAP 173
           +GC++    
Sbjct: 867 RGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.4 bits (167), Expect = 2e-13
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +   +N+    +  +      L  L L  N ++            +E L  S+NK  
Sbjct: 575 LGLLDCVHNKV-RHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 112 GRIPQ--QLVELTFLEFFNVSDNYLTGPIPQ 140
             IP       +  +   + S N +      
Sbjct: 633 Y-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 13/110 (11%)

Query: 52  LTGIILSNNRFD---EAIPASISNLKG--LQVLNLHNNNLQGHIPSCLGNLTNLESLDLS 106
           +  +  S N+       I  S+ + KG     + L  N +Q          + + ++ LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 107 NNKFS-------GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           NN  +                   L   ++  N LT  +    +  T   
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 8e-13
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSC--LGNLTNLESLDLSNN 108
           LT + L  N+ +E IP    +    ++ L   +N L+  IP+     ++  + S+D S N
Sbjct: 597 LTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYN 654

Query: 109 KFSGRIPQQLVELTF-----LEFFNVSDNYLTGPIP 139
           K           +            +S N +     
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT 690

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 11/81 (13%), Positives = 27/81 (33%)

Query: 60  NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV 119
           + + +     + N   +  L+L     +G +P  +G LT L+ L    +  +        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 120 ELTFLEFFNVSDNYLTGPIPQ 140
           E    +      + +     +
Sbjct: 369 EELTPDMSEERKHRIRMHYKK 389

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 8e-10
 Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           +TG+ L+       +P +I  L  L+VL+   ++               +  +   ++  
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 112 GRIPQ-QLVELTFLEFFNVSDNYLTG 136
               +  L     L   ++  + +  
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINR 410

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 9e-10
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
            T I    NR    I  +I  L  LQ++   N+       +      + E  +    K  
Sbjct: 427 DTQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDWEDANSDYAKQY 480

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                    L  L    + +      +P  
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF 510

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 12/61 (19%), Positives = 21/61 (34%)

Query: 79  LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPI 138
            N   +         L N   +  L L+     GR+P  + +LT L+  +   +  T   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 139 P 139
            
Sbjct: 364 R 364

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.8 bits (192), Expect = 1e-16
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS    +     +   L  L  L L  N +Q   P     LT+LE+L     K +
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFA 145
                 + +L  L+  NV+ N++         F+
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFS 150

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 76.2 bits (188), Expect = 3e-16
 Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + ++ N F +   +++ +N   L  L+L    L+         L  L+ L++S+N  
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
                    +L  L   + S N +     
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 75.8 bits (187), Expect = 4e-16
 Identities = 24/92 (26%), Positives = 31/92 (33%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP     I LS N        S SN   LQ L+L    ++         L +L +L L+ 
Sbjct: 30  IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           N      P     LT LE     +  L     
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVETKLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 24/81 (29%), Positives = 37/81 (45%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + LS  + ++        L  LQ+LN+ +NNL     S    L +L +LD S N+  
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

Query: 112 GRIPQQLVELTFLEFFNVSDN 132
                       L FFN+++N
Sbjct: 535 TSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 52  LTGIILSNNRFDEAIPAS-ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  +   ++        S   +L+ L  L++   N +         LT+L +L ++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 111 SGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQ 140
                       T L F ++S   L      
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNNKF 110
           L  + LS N     + A+   L+ LQ L+  ++ L+     S   +L  L  LD+S    
Sbjct: 378 LRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                   + LT L    ++ N         
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQGHIPS 92
           +T NK            L+ + LS N    +   S S+L    L+ L+L  N     + +
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSA 393

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNVSDNYLTGPIP 139
               L  L+ LD  ++           + L  L + ++S         
Sbjct: 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
             + +  + +P  I +    + ++L  N L+        N + L+ LDLS  +      +
Sbjct: 18  CMDQKLSK-VPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDK 74

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQ 140
               L  L    ++ N +    P 
Sbjct: 75  AWHGLHHLSNLILTGNPIQSFSPG 98

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 52  LTGIILSNNRFDEA-IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL----ESLDLS 106
           L  + +++N      +PA  SNL  L  ++L  N +Q    + L  L        SLD+S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 107 NNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
            N     I  Q  +   L    +  N+ +  I + 
Sbjct: 190 LNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L+              L  +  ++L   +++ ++   +      +SL +   +       
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLED-VPKHFKWQSLSIIRCQLKQFPTL 325

Query: 117 QLVELTFLEFFNVSDNYLTGPIP 139
            L  L  L    ++ N  +    
Sbjct: 326 DLPFLKSL---TLTMNKGSISFK 345

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 7/88 (7%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
              + +   +  +  P    +L  L+ L L  N     I      L +L  LDLS N  S
Sbjct: 309 WQSLSIIRCQLKQ-FPTL--DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALS 363

Query: 112 GRIPQ--QLVELTFLEFFNVSDNYLTGP 137
                    +    L   ++S N     
Sbjct: 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIM 391

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 8/96 (8%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 43  MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH--NNNLQGHIPSCLGNLTNL 100
           +    +  ++ G        +   P+ +  L  + +        N           L N+
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 101 ESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136
            ++ L+         + + +    +  ++    L  
Sbjct: 288 SAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 5/107 (4%)

Query: 47  KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDL 105
           + P +   + +S N  D     +   +K L  L L  N    +I   CL NL  L    L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 106 SNNKFSGRIPQQLVELTFLEFF---NVSDNYLTGPIPQGKQFATFDN 149
              +F      ++ E + +E      + +  LT           F  
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 14/93 (15%), Positives = 27/93 (29%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P+    +  S N        + S L  L  L+L    +         +   L++L L+ 
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           N         L     L+        ++     
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 10/108 (9%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
            ++N +P I          LT + L+  +       +  +   L  L L  N L     +
Sbjct: 40  FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET 99

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
            L     L+ L       S      L     LE   +  N+++     
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 18/89 (20%), Positives = 32/89 (35%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  ++L+ N        ++S  K L+ L      +       L N   LESL L +N  S
Sbjct: 83  LDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS 142

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
                +      L+  +  +N +     +
Sbjct: 143 SIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + L+  R       S   NL  L+VLNL ++ L          L  L+ L+L  N F
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHF 461

Query: 111 SGRIPQQ---LVELTFLEFFNVSDNYLTGPIP 139
                Q+   L  L  LE   +S   L+    
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 2/95 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L+       +P+ +  L  L+ L L  N  +        N  +L  L +  N   
Sbjct: 280 LQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338

Query: 112 GRI-PQQLVELTFLEFFNVSDNYLTGPIPQGKQFA 145
             +    L  L  L   ++S + +        Q  
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 52  LTGIILSNNRF---DEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           L  + L  N F   +     S+  L  L++L L   +L         +L  +  +DLS+N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 109 KFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
           + +    + L  L  + + N++ N+++  +P 
Sbjct: 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  ++LS          + ++LK +  ++L +N L       L +L  +  L+L++N  S
Sbjct: 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHIS 536

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTG 136
             +P  L  L+     N+  N L  
Sbjct: 537 IILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 2/107 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +              + N K L+ L L +N++             L+ LD  NN   
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 112 GRIPQQLVELTFLE--FFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156
               + +  L        N++ N + G  P     A F + +F    
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           L      +   ++  PA    L    ++ +NL  +       +     + L+ LDL+   
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
            S  +P  LV L+ L+   +S N       
Sbjct: 290 LS-ELPSGLVGLSTLKKLVLSANKFENLCQ 318

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 52  LTGIILSNNRFD--EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           L  + LS++  +  +     + NL  LQ LNL  N               LE LDL+  +
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 110 FSGRIPQ-QLVELTFLEFFNVSDNYLTGPIPQ 140
              +  Q     L  L+  N+S + L     Q
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLH-NNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  +   NN         +S+L+    L+L+ N N    I     +    +SL+    + 
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 111 SGRIPQQLVELTF--LEFFNVSDNYLTGPIP 139
              I + L   T   L      D       P
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 11/88 (12%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 52  LTGIILSNNRFDEAIPASISN--LKGLQVLNLHNNNLQGHIPSCLGNL--TNLESLDLSN 107
              +     +    I   + N  ++ L +    + + +   P+    L   ++ES++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           + F           + L+  +++  +L+
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 18/84 (21%), Positives = 28/84 (33%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L         P        L+ L L + +    +P  +  LT LE LDL      
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
            R+P  + +L       V  +   
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 72.7 bits (179), Expect = 3e-15
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
              + L +       P     L  LQ + +    L   +P  +     LE+L L+ N   
Sbjct: 83  RVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

Query: 112 GRIPQQLVELTFLEFFNVSDN 132
             +P  +  L  L   ++   
Sbjct: 141 -ALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + + N+    A+  +I +L  L+ L+L       + P   G    L+ L L +    
Sbjct: 208 LKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
             +P  +  LT LE  ++        +P
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN---------LTNLES 102
           L  + L+ N    A+PASI++L  L+ L++        +P  L +         L NL+S
Sbjct: 129 LETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 103 LDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           L L        +P  +  L  L+   + ++ L+
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 57  LSNNRFDEAIPASISNLK--GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 114
               R  +A    + +    G   L L +  L    P     L++L+ + +        +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 115 PQQLVELTFLEFFNVSDNYLT 135
           P  + +   LE   ++ N L 
Sbjct: 120 PDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 13/71 (18%), Positives = 25/71 (35%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +IL +      +P  I  L  L+ L+L        +PS +  L     + +  +  +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 112 GRIPQQLVELT 122
                + V   
Sbjct: 315 QLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 67  PASISNLKGLQVLNLHNNNLQGHIPSCLGNLT--NLESLDLSNNKFSGRIPQQLVELTFL 124
               +N    Q+       L+      L + T     +L+L +     + P Q   L+ L
Sbjct: 49  AWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL 106

Query: 125 EFFNVSDNYLT 135
           +   +    L 
Sbjct: 107 QHMTIDAAGLM 117

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 6/67 (8%), Positives = 14/67 (20%), Gaps = 4/67 (5%)

Query: 69  SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128
              +  G + L    +         L       + D +    + R           +   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIET 62

Query: 129 VSDNYLT 135
            +   L 
Sbjct: 63  RTGRALK 69

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 5e-14
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
                ++++   +A+ +   +   ++ L+L  N L     + L   T LE L+LS+N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQ 143
                 L  L+ L   ++++NY+   +  G  
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQE-LLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 63.7 bits (155), Expect = 6e-12
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124
           AI     N    ++  + +++L+  + S   +  N++ LDLS N  S      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 125 EFFNVSDNYLTGPIP 139
           E  N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 9e-11
 Identities = 26/130 (20%), Positives = 40/130 (30%), Gaps = 13/130 (10%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
           YN I D+        L  + LS+N+    +     +  G+  ++L NN L   I   L  
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156
             NLE  DL  N F     +            V+   +      G+        +     
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVKK--LTGQNEEECTVPTLGHYG 292

Query: 157 GLCGRPLSKG 166
             C   L   
Sbjct: 293 AYCCEDLPAP 302

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 5e-10
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 45  YNKIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTN 99
            N + ++     +  +  +NN     +  S    +G + + L NN +        G  + 
Sbjct: 89  NNYVQELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 100 LESLDLSNNKFSG-RIPQQLVELTFLEFFNVSDNYLT 135
           ++ LDL  N+       +       LE  N+  N++ 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 7/96 (7%), Positives = 20/96 (20%), Gaps = 4/96 (4%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP- 115
              +  +  +     N    + ++      +  I           +L+        ++  
Sbjct: 320 GQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378

Query: 116 --QQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
             +   EL       V    L     +         
Sbjct: 379 GRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRA 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 69.4 bits (170), Expect = 7e-14
 Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 11/117 (9%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           +++N +  +          L  + LS          +  +L  L  L L  N +Q     
Sbjct: 35  LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
               L++L+ L       +      +  L  L+  NV+ N +       + F+   N
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 19/88 (21%), Positives = 32/88 (36%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P     + LS N        S  +   LQVL+L    +Q        +L++L +L L+ 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           N            L+ L+     +  L 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLA 113

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKF 110
           L  + +S+     A     + L  L+VL +  N+ Q +        L NL  LDLS  + 
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLT 135
               P     L+ L+  N++ N L 
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 8e-12
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  +   ++   +    S+  +L+ L  L++ + + +         L++LE L ++ N F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 111 SGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
                     EL  L F ++S   L   +        F++
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT----AFNS 492

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + ++ N F E     I + L+ L  L+L    L+   P+   +L++L+ L++++N+ 
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

Query: 111 SGRIPQQLVELTFLEFFNVSDN 132
                     LT L+   +  N
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKF 110
           L  ++             I +LK L+ LN+ +N +Q   +P    NLTNLE LDLS+NK 
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 111 SGRIPQQLVELTFLEFF----NVSDNYLT 135
                  L  L  +       ++S N + 
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 15/111 (13%)

Query: 43  MTYNKIPDI--------LTGIILSNNR--FDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
            T NK  +         L  + LS N   F      S      L+ L+L  N +   + S
Sbjct: 332 FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSS 390

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQ--LVELTFLEFFNVSDNYLTGPIPQG 141
               L  LE LD  ++    ++ +    + L  L + ++S  +       G
Sbjct: 391 NFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRV-AFNG 439

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + LS  + ++  P + ++L  LQVLN+ +N L+         LT+L+ + L  N + 
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 6/88 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQV----LNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           L  + LS+N+        +  L  + +    L+L  N +   I         L  L L N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRN 209

Query: 108 NKFSGRIPQQLVE-LTFLEFFNVSDNYL 134
           N  S  + +  ++ L  LE   +     
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEF 237

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 7/86 (8%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK-- 109
              + L N +F +  P     LK L+ L   +N           +L +LE LDLS N   
Sbjct: 306 WQHLELVNCKFGQ-FPTL--KLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLS 360

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLT 135
           F G   Q     T L++ ++S N + 
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 52  LTGIILSNNRFDEAIPA-SISNLKGLQVLNL------HNNNLQGHIPSCLGNLTNLESLD 104
           L  + L NN     +    I  L GL+V  L      +  NL+    S L  L NL   +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261

Query: 105 LSNNK---FSGRIPQQLVELTFLEFFNVSDNYLT 135
                   +   I      LT +  F++    + 
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 68.7 bits (169), Expect = 8e-14
 Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 12/99 (12%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            N+I DI        L  + + +N+  +   + ++NL  L  L L+NN L       +G 
Sbjct: 252 TNQISDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           LTNL +L LS N  +   P  L  L+ ++  + ++  + 
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            NKI D+        LT + +  N+    I A + +L  L++LN+ +N +     S L N
Sbjct: 230 NNKITDLSPLANLSQLTWLEIGTNQI-SDINA-VKDLTKLKMLNVGSNQISD--ISVLNN 285

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           L+ L SL L+NN+      + +  LT L    +S N++T   P
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 13/105 (12%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL 94
           +  NKI DI        L  + L+ +   +  P  ++NL  +  LNL  N+    +   L
Sbjct: 95  IGTNKITDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-L 151

Query: 95  GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
            N+T L  L ++ +K     P  +  LT L   +++ N +    P
Sbjct: 152 SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + ++ ++  +  P  I+NL  L  L+L+ N ++   P  L +LT+L       N+ +
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP 139
              P  +  +T L    + +N +T   P
Sbjct: 213 DITP--VANMTRLNSLKIGNNKITDLSP 238

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 59.9 bits (146), Expect = 8e-11
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 46  NKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
             I  I            +L      + +      L+ +  L +    +   I   +  L
Sbjct: 10  APINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYL 65

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           TNLE L+L+ N+ +   P  L  L  L    +  N +T    
Sbjct: 66  TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA 105

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-13
 Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL 94
           +      +         L  + +           ++S L  L +L++ ++     I + +
Sbjct: 73  INNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 95  GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
             L  + S+DLS N     I   L  L  L+  N+  + + 
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
              + D+        +  + ++N       P  IS L  L+ L +   ++       L  
Sbjct: 53  NINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG 110

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDN 132
           LT+L  LD+S++     I  ++  L  +   ++S N
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 3e-10
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT I L+N    +     I     ++ L ++N +      + +  L+NLE L +     +
Sbjct: 46  LTYITLANINVTDLTG--IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVT 101

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                 L  LT L   ++S +     I   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           +  I LS N     I   +  L  L+ LN+  + +  +    + +   L  L   +    
Sbjct: 138 VNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

Query: 112 G 112
           G
Sbjct: 195 G 195

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
                ++++   +A+ +   +   ++ L+L  N L     + L   T LE L+LS+N   
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQ 143
                 L  L+ L   ++++NY+   +  G  
Sbjct: 72  E--TLDLESLSTLRTLDLNNNYVQE-LLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 20/75 (26%), Positives = 33/75 (44%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL 124
           AI     N    ++  + +++L+  + S   +  N++ LDLS N  S      L   T L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 125 EFFNVSDNYLTGPIP 139
           E  N+S N L   + 
Sbjct: 61  ELLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 11/99 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
           YN I D+        L  + LS+N+    +     +  G+  ++L NN L   I   L  
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
             NLE  DL  N F     +            V+   + 
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFF-SKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 45  YNKIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTN 99
            N + ++     +  +  +NN     +  S    +G + + L NN +        G  + 
Sbjct: 89  NNYVQELLVGPSIETLHAANNNI-SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSR 145

Query: 100 LESLDLSNNKFSG-RIPQQLVELTFLEFFNVSDNYLT 135
           ++ LDL  N+       +       LE  N+  N++ 
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.0 bits (161), Expect = 1e-12
 Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           +++  +  +          L  + L+ N+ ++    +   L  LQVLNL  N L     S
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
               L  +  +DL  N  +    Q    L  L+  ++ DN LT
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 13/112 (11%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAI-PASISNLKGLQVLNLHNNNLQGHIP 91
           +++N I  +          L  + L +      I   +  NL  L++L+L ++ +    P
Sbjct: 31  LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90

Query: 92  SCLGNLTNLESLDLSNNKFSGRI--PQQLVELTFLEFFNVSDNYLTGPIPQG 141
                L +L  L L     S  +        L  L   ++S N +       
Sbjct: 91  DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 46  NKIPDILTGII---LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHI-PSCLGNLTNLE 101
            ++P +L       LS N       +S   L+ LQ+L L +      I      NL NL 
Sbjct: 17  TQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR 76

Query: 102 SLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFA 145
            LDL ++K     P     L  L    +    L+  + +   F 
Sbjct: 77  ILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 19/84 (22%), Positives = 32/84 (38%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           +  + LS+             LK L+VLNL  N +          L NL+ L+LS N   
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
                    L  + + ++  N++ 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 2e-10
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 52  LTGIILSNNRFDEAIPASI-----SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLS 106
           L  + L  N    A    +       L  LQVL L++N L    P    +LT L  L L+
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 107 NNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC 159
           +N+ +      L     LE  ++S N L  P P    F +        N  +C
Sbjct: 513 SNRLTVLSHNDL--PANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)

Query: 52  LTGIILSNNRFDEAI--PASISNLKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNN 108
           L  + L      +A+       NLK L  L+L  N ++  ++    G L +L+S+D S+N
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158

Query: 109 KFSGRIPQQLVELTF--LEFFNVSDNYLTGPIPQG--KQFATFDNTSFDAN 155
           +       +L  L    L FF+++ N L   +     K    F N   +  
Sbjct: 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 42  MMTYNKIPDI------LTGIILSNNRFDE-AIPASISNLKGLQVLNLHNNNLQGHIPSCL 94
            ++ NK+  +         I LS NR +   I   +  +  LQ+L L+ N          
Sbjct: 387 FLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

Query: 95  -GNLTNLESLDLSNNKFSGRIPQQLVELTF-----LEFFNVSDNYLT 135
                +LE L L  N        +L    F     L+   ++ NYL 
Sbjct: 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 13/117 (11%)

Query: 43  MTYNKIPDI-----LTGIILSNNRFDEAIPASISNLK-GLQVLNLHNNNLQG-HIPSCLG 95
           +  N +  I     +  I LS N+       ++  +     +++L  N L+   I   L 
Sbjct: 369 LRDNALTTIHFIPSIPDIFLSGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 96  NLTNLESLDLSNNKFSGRIPQQLVE-LTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
            + +L+ L L+ N+FS     Q       LE   + +N L         +  F+  S
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLS 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI-P 115
                  + +P     L   + L L  N ++    S    L  L+ L+L +      I  
Sbjct: 11  YRFCNLTQ-VP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66

Query: 116 QQLVELTFLEFFNVSDNYLT 135
           +    L  L   ++  + + 
Sbjct: 67  EAFRNLPNLRILDLGSSKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 21/105 (20%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           ++YN + ++          +  I L  N        +   L+ LQ L+L +N L     +
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----T 375

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTF-LEFFNVSDNYLTG 136
            +  + ++  + LS NK        L ++       ++S+N L  
Sbjct: 376 TIHFIPSIPDIFLSGNKLV-----TLPKINLTANLIHLSENRLEN 415

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 45  YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL--TNLES 102
            N     +TG    +N   ++   S+     +       +N++    +    L  +++  
Sbjct: 213 GNGWTVDITG--NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRH 270

Query: 103 LDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           LDLS+        +    L  L+  N++ N + 
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 24/142 (16%)

Query: 43  MTYNKIPDI-----------LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQGH 89
           ++ N+I  +           L  I  S+N+        +  L+G  L   +L  N+L   
Sbjct: 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 90  IPSCLGNLTN------LESLDLSNNKFSGRIPQQLV-ELTFLEFFN-VSDNYLTGPIPQG 141
           +    G   N      LE LD+S N ++  I       ++  + F+ +  +++ G     
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249

Query: 142 KQFATFDNTSFDANSGLCGRPL 163
                 D  +F   +GL    +
Sbjct: 250 HNIKDPDQNTF---AGLARSSV 268

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.8 bits (160), Expect = 1e-12
 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 46  NKIPDI---LTGIILSNNRFDEAIPASISNLKGLQ----VLNLHNNNLQGHIPSCLGNLT 98
             +P++   L  + +S N   E++PA        +          N +  HIP  + +L 
Sbjct: 173 TFLPELPESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLD 230

Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 144
              ++ L +N  S RI + L + T    ++    Y +    Q    
Sbjct: 231 PTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 57.3 bits (138), Expect = 9e-10
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
            + + L+       +P ++     + VL +  N L   +P    +L  L   D  +N+ S
Sbjct: 61  FSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLPELPASLEYL---DACDNRLS 113

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +P+    L  L   +V +N LT
Sbjct: 114 -TLPELPASLKHL---DVDNNQLT 133

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 56.9 bits (137), Expect = 1e-09
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 12/84 (14%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + + NN+    +P   + L   + +N  NN L   +P      T+LE L + NN+ +
Sbjct: 122 LKHLDVDNNQL-TMLPELPALL---EYINADNNQLT-MLPE---LPTSLEVLSVRNNQLT 173

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +P+    L  L   +VS N L 
Sbjct: 174 -FLPELPESLEAL---DVSTNLLE 193

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 11/73 (15%)

Query: 66  IPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS---GRIPQQLVELT 122
             ++    +   +   + N     +  CL  +     L L+    S     +P Q+  L 
Sbjct: 29  YFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNLPPQITVL- 85

Query: 123 FLEFFNVSDNYLT 135
                 ++ N L 
Sbjct: 86  -----EITQNALI 93

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL 94
           +  N+I ++        LT + L  N+     P  ++ L  L  L L+ N L+   P  +
Sbjct: 250 LANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--I 305

Query: 95  GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
            NL NL  L L  N  S   P  +  LT L+     +N ++    
Sbjct: 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.2 bits (157), Expect = 3e-12
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 44  TYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 95
               I  I        LT I  SNN+  +  P  + NL  L  + ++NN +    P  L 
Sbjct: 54  DRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA 109

Query: 96  NLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK 142
           NLTNL  L L NN+ +   P  L  LT L    +S N ++       
Sbjct: 110 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG 154

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 14/105 (13%)

Query: 46  NKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
             I  I            +L      + +    ++L  +  L      ++      +  L
Sbjct: 12  TPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYL 67

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK 142
            NL  ++ SNN+ +   P  L  LT L    +++N +    P   
Sbjct: 68  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLAN 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            NK+ DI        L  +I +NN+  +  P  +  L  L  L+L+ N L+      L +
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLAS 241

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           LTNL  LDL+NN+ S   P  L  LT L    +  N ++   P
Sbjct: 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-10
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 12/102 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
           +N I DI        L  +   NN+  +   +S++NL  +  L+  +N +    P  L N
Sbjct: 318 FNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPI 138
           LT +  L L++  ++         ++           L  P 
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 5e-10
 Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 15/103 (14%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            N+I DI        L  + LS+N   +   +++S L  LQ L+   N +    P  L N
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LAN 175

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           LT LE LD+S+NK S      L +LT LE    ++N ++   P
Sbjct: 176 LTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 11/104 (10%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
           +N+I D+        +T + L++  +  A     +N+     +      L    P+ + +
Sbjct: 362 HNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISD 419

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
             +    D++ N  S    +     +            +G + Q
Sbjct: 420 GGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQ 462

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 1/97 (1%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +   +  + LS N+        +     LQVL L ++ +         +L +LE LDLS+
Sbjct: 24  LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 144
           N  S         L+ L++ N+  N     +     F
Sbjct: 84  NHLSSLSSSWFGPLSSLKYLNLMGNPYQT-LGVTSLF 119

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKF 110
           L  + LS+N       +    L  L+ LNL  N  Q   + S   NLTNL++L + N + 
Sbjct: 76  LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

Query: 111 SGRIPQQ-LVELTFLEFFNVSDNYLT 135
              I +     LT L    +    L 
Sbjct: 136 FSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 60.9 bits (148), Expect = 5e-11
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + +S N F   +P S    + ++ LNL +  ++  + +C+     LE LD+SNN   
Sbjct: 389 LTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLD 444

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
                 L  L  L    +S N L 
Sbjct: 445 -SFSLFLPRLQEL---YISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           +  + +        +    S L+ ++ + + N+ +     S   +L +LE LDLS N   
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 112 GRIPQQLVE---LTFLEFFNVSDNYLT 135
               +          L+   +S N+L 
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLR 374

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAI---PASISNLKGLQVLNLHNNNLQ-- 87
           +  +K+  +          L  + LS N   E      A       LQ L L  N+L+  
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

Query: 88  GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
                 L  L NL SLD+S N F   +P        + F N+S   + 
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 13/86 (15%), Positives = 32/86 (37%), Gaps = 1/86 (1%)

Query: 52  LTGIILSNNRFDEAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + + N      I     + L  L  L +   +L+ +    L ++ ++  L L  ++ 
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTG 136
           +  +      L+ + +  + D  L  
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 46  NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL 105
             IP  L  + +SNN  D         L  LQ L +  N L+  +P        L  + +
Sbjct: 427 TCIPQTLEVLDVSNNNLDS-FS---LFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKI 480

Query: 106 SNNKFSGRIPQQLVELTFLEFFNVSDN 132
           S N+           LT L+   +  N
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 9/81 (11%), Positives = 24/81 (29%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +           S+ +++ +  L LH +     +      L+++  L+L +   +
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 112 GRIPQQLVELTFLEFFNVSDN 132
                 L              
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 43  MTYNKIPDI------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
           ++ N +         L  + +S N+  + +P + S    L V+ +  N L+         
Sbjct: 438 VSNNNLDSFSLFLPRLQELYISRNKL-KTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 97  LTNLESLDLSNNKF 110
           LT+L+ + L  N +
Sbjct: 496 LTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 12/79 (15%), Positives = 29/79 (36%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
            + +  D            ++ L++    L   + +    L  ++ + + N+K       
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 117 QLVELTFLEFFNVSDNYLT 135
               L  LEF ++S+N + 
Sbjct: 329 FSQHLKSLEFLDLSENLMV 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 75  GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYL 134
              V +  + +    IPS L     ++SLDLS NK +      L     L+   +  + +
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI 62

Query: 135 T 135
            
Sbjct: 63  N 63

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 16/107 (14%), Positives = 32/107 (29%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           +  + L  +     +      L  ++ L L + NL     S L        +     + S
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS 233

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
               +   EL  L  + +  + +            F+ +  D  S L
Sbjct: 234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL 280

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 63.2 bits (153), Expect = 8e-12
 Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L++          +  L  +  L+L +N L+  +P  L  L  LE L  S+N     +  
Sbjct: 448 LAHKDLTV--LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD- 502

Query: 117 QLVELTFLEFFNVSDNYLT 135
            +  L  L+   + +N L 
Sbjct: 503 GVANLPRLQELLLCNNRLQ 521

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 3e-08
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 67  PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126
                    ++VL+L + +L   +   L  L  +  LDLS+N+    +P  L  L  LE 
Sbjct: 434 SVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 127 FNVSDNYLT 135
              SDN L 
Sbjct: 491 LQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 45  YNKIPDILTGII---------LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH-IPSCL 94
           +N++  +   +           S+N   E +   ++NL  LQ L L NN LQ       L
Sbjct: 472 HNRLRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLLCNNRLQQSAAIQPL 529

Query: 95  GNLTNLESLDLSNNKFS 111
            +   L  L+L  N   
Sbjct: 530 VSCPRLVLLNLQGNSLC 546

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.4 bits (154), Expect = 8e-12
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +I+S NR   ++P   S L   + L +  N L   +P     L    SL +  N+ +
Sbjct: 223 LKELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLT 274

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
            R+P+ L+ L+     N+  N L+
Sbjct: 275 -RLPESLIHLSSETTVNLEGNPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +S N+   ++P     L  L + +    +L           + L  L +  N+ +
Sbjct: 83  LRTLEVSGNQL-TSLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLT 134

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +P     L  L   +VSDN L 
Sbjct: 135 -SLPVLPPGLQEL---SVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 29/111 (26%)

Query: 45  YNKIPDILTGII---LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT--- 98
              +P + +G+    +  N+   ++P     L   Q L++ +N L   +P+    L    
Sbjct: 113 LTHLPALPSGLCKLWIFGNQL-TSLPVLPPGL---QELSVSDNQLA-SLPALPSELCKLW 167

Query: 99  --------------NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
                          L+ L +S+N+ +  +P    EL  L      +N LT
Sbjct: 168 AYNNQLTSLPMLPSGLQELSVSDNQLA-SLPTLPSELYKLW---AYNNRLT 214

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 18/97 (18%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-----CLGN--------LT 98
           L  + +S+N+   ++P   S L  L   N    +L             GN         +
Sbjct: 183 LQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS 241

Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            L+ L +S N+ +  +P     L  L   +V  N LT
Sbjct: 242 ELKELMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 20/81 (24%)

Query: 73  LKGLQVLNLHNNNLQGHIPSCLGN------------------LTNLESLDLSNNKFSGRI 114
             G  VLN+  + L   +P CL                       L +L++S N+ +  +
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SL 96

Query: 115 PQQLVELTFLEFFNVSDNYLT 135
           P     L  L  F+    +L 
Sbjct: 97  PVLPPGLLELSIFSNPLTHLP 117

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +  N+    +P S+ +L     +NL  N L       L  +T+         +F 
Sbjct: 263 LLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFD 321

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
                   E   L     + ++L      
Sbjct: 322 MAGASAPRETRALH--LAAADWLVPAREG 348

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L G+ LS+N   +A  A        L  LNL    L+  +P  L     L  LDLS N+ 
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRL 286

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLTGP 137
             R P    EL  +   ++  N     
Sbjct: 287 D-RNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 4e-10
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 52  LTGIILSNNRF--DEAIPASI--SNLKGLQVLNLHNNNLQ---GHIPSCLGNLTNLESLD 104
           L+ + LS+N    +  + +++       LQVL L N  ++   G   +       L+ LD
Sbjct: 175 LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLD 234

Query: 105 LSNNKFSGRIPQQL-VELTFLEFFNVSDNYLT 135
           LS+N              + L   N+S   L 
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 7e-08
 Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 8/92 (8%)

Query: 52  LTGIILSNNRF--DEAIPASISNL--KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           L  + L N  +   +A  A +      GL+VL++   +        +     L +LDLS+
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182

Query: 108 NKFSGRIP----QQLVELTFLEFFNVSDNYLT 135
           N   G          ++   L+   + +  + 
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGME 214

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 8e-08
 Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 52  LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQG------HIPSCLGNLTNLESL 103
           L  + L N       P  +    G  L +LNL N +          +   L     L+ L
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL--KPGLKVL 154

Query: 104 DLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
            ++         +Q+     L   ++SDN   G   
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 55  IILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC---LGNLTNLESLDLSNNKFS 111
           +   +   D      I     L+ L +    +   I      +  ++ L+ L L N + +
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 112 GRIPQQLVELTF--LEFFNVSDNYLTGPIPQGKQFATFDNTS 151
           G  P  L+E T   L   N+ +           +   +    
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPG 150

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +SNNR   A+      +  L+VL+L +N+L  H+         LE+L L +N   
Sbjct: 274 LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +         L+   +S N   
Sbjct: 332 -TLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 45  YNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
           +N I  +       LT + L +N   +   A + N  GL  ++L  N L+  +      +
Sbjct: 214 HNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
             LE L +SNN+    +      +  L+  ++S N+L 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 5e-09
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           +  + +  N     +P  +  N+  L VL L  N+L         N   L +L +SNN  
Sbjct: 95  IQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLT 135
                      T L+   +S N LT
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 6e-09
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           LT ++L  N    ++P  I  N   L  L++ NNNL+  I        T+L++L LS+N+
Sbjct: 119 LTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLT 135
            +  +   L  +  L   NVS N L+
Sbjct: 177 LT-HVDLSL--IPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 8/85 (9%), Positives = 28/85 (32%)

Query: 51  ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           +   + +     D         L   +++   N+ ++    + L +   +E L+L++ + 
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLT 135
                        ++   +  N + 
Sbjct: 82  EEIDTYAFAYAHTIQKLYMGFNAIR 106

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS+NR    +   +S +  L   N+  N L     S L     +E LD S+N  +
Sbjct: 167 LQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
                  VELT L    +  N LT
Sbjct: 219 VVRGPVNVELTIL---KLQHNNLT 239

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.4 bits (149), Expect = 3e-11
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +    T + +S N   E   + I +L  L++L + +N +Q    S       LE LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 144
           NK         V L  L   ++S N     +P  K+F
Sbjct: 79  NKLVKISCHPTVNLKHL---DLSFNAFDA-LPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 2e-08
 Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 6/92 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC--LGNLTNLESLDLSNNK 109
           L  + LS+N+    I         L+ L+L  N     +P C   GN++ L+ L LS   
Sbjct: 71  LEYLDLSHNKL-VKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTH 126

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                   +  L   +   V            
Sbjct: 127 LEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 14/79 (17%), Positives = 27/79 (34%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           + ++ F             + + N   +  +     C   ++    LD SNN  +  + +
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 117 QLVELTFLEFFNVSDNYLT 135
               LT LE   +  N L 
Sbjct: 343 NCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 11/77 (14%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC- 93
           M+ N + D         +  + L +N+  ++IP  +  L+ LQ LN+ +N L+  +P   
Sbjct: 406 MSSNILTDTIFRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLK-SVPDGI 463

Query: 94  LGNLTNLESLDLSNNKF 110
              LT+L+ + L  N +
Sbjct: 464 FDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 52  LTGIILSNNRFD--EAIPASISNLKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNN 108
           L  +IL  N+      I    + +K LQ L++  N++             +L SL++S+N
Sbjct: 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

Query: 109 KFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
             +  I + L     ++  ++  N +   IP+ 
Sbjct: 410 ILTDTIFRCL--PPRIKVLDLHSNKIKS-IPKQ 439

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 8/100 (8%)

Query: 43  MTYNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 95
           ++  K+  I       L  + L +N+        +     L  L L +N ++      L 
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

Query: 96  NLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            L  L  L L NNK S R+P  L +L  L+   +  N +T
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 53.9 bits (130), Expect = 8e-09
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 3/77 (3%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           I    T + L NN   E        L+ L  L L NN +          L  L+ L +S 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 108 NKFS---GRIPQQLVEL 121
           N        +P  LVEL
Sbjct: 112 NHLVEIPPNLPSSLVEL 128

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +  S+      +P  IS      +L+L NN++          L +L +L L NNK S
Sbjct: 35  LRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
               +    L  L+   +S N+L   IP  
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVE-IPPN 120

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 19/84 (22%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           + +N+I  I          L  + L NN+    +PA + +LK LQV+ LH NN+   +  
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 93  -------CLGNLTNLESLDLSNNK 109
                            + L NN 
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 13/103 (12%)

Query: 52  LTGIILSNNRFDEAI--PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           +  I +  N  + +   P +   LK L  L +    L   IP        L  L L +NK
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLT-GIPK--DLPETLNELHLDHNK 204

Query: 110 FSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
               I  + L+  + L    +  N +   I  G    +     
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIRM-IENG----SLSFLP 241

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 43  MTYNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG 95
           +    I  I       LT + L  N+  +   AS+  L  L  L L  N++       L 
Sbjct: 178 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA 237

Query: 96  NLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           N  +L  L L+NNK   ++P  L +  +++   + +N ++
Sbjct: 238 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P     + L NN+  E       NLK L  L L NN +    P     L  LE L LS 
Sbjct: 50  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109

Query: 108 NKFS---GRIPQQLVEL 121
           N+      ++P+ L EL
Sbjct: 110 NQLKELPEKMPKTLQEL 126

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 18/104 (17%), Positives = 42/104 (40%), Gaps = 14/104 (13%)

Query: 42  MMTYNKIPDI-------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQ-GHIPS 92
            ++ N++ ++       L  + +  N     +  S+ + L  + V+ L  N L+   I +
Sbjct: 106 YLSKNQLKELPEKMPKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164

Query: 93  -CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
                +  L  + +++   +  IPQ L     L   ++  N +T
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 52  LTGIILSNNRFDE------AIPASISNLKGLQVLNLHNNNLQGHI--PSCLGNLTNLESL 103
           +  + L NN            P   +       ++L +N +Q     PS    +    ++
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

Query: 104 DLSNNK 109
            L N K
Sbjct: 325 QLGNYK 330

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 60.0 bits (146), Expect = 7e-11
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ-GHIPS-CLGNLTNLESLDL 105
           IP   T + L +N+           L  L  L+L +N L      S      T+L+ LDL
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 106 SNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           S N     +    + L  LE  +   + L 
Sbjct: 86  SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK 114

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 18/121 (14%)

Query: 43  MTYNKIPDI---------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS 92
           +++N +  +         L  +   ++   +    S+  +L+ L  L++ + + +    +
Sbjct: 85  LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFN 143

Query: 93  -CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT 150
                L++LE L ++ N F          EL  L F ++S   L   +        F++ 
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPT----AFNSL 198

Query: 151 S 151
           S
Sbjct: 199 S 199

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 6e-09
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + LS  + ++  P + ++L  LQVLN+ +NN           L +L+ LD S N   
Sbjct: 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 112 GRIPQQLVE--LTFLEFFNVSDN 132
               +Q ++   + L F N++ N
Sbjct: 237 -TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 5/81 (6%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR--I 114
            ++     ++P  I        L L +N LQ         LT L  L LS+N  S +   
Sbjct: 14  CNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 115 PQQLVELTFLEFFNVSDNYLT 135
            Q     T L++ ++S N + 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI 91

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL-TNLESLDLSNNKF 110
           L  + +S+N F          L  LQVL+   N++       L +  ++L  L+L+ N F
Sbjct: 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

Query: 111 S 111
           +
Sbjct: 261 A 261

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 46  NKIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL 100
            K+P++     L  I + NN   + +P    +L   + +   NN L+  +P  L NL  L
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLKK-LPDLPPSL---EFIAAGNNQLE-ELPE-LQNLPFL 197

Query: 101 ESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGP 137
            ++   NN    ++P   + L  +      +N L   
Sbjct: 198 TAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 20/99 (20%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC---------------LGN 96
           L  ++ S N   E +P    +LK L V N +   L    P                 L N
Sbjct: 93  LESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQN 151

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            + L+ +D+ NN    ++P     L F+      +N L 
Sbjct: 152 SSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 37  NSKGRMMTYNKIPDI----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           N + R M  +++ D        + L+N      +P    +L   + L    N+L   +P 
Sbjct: 54  NGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPE 108

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
              +L +L   + +    S  +P  L  L       VS+N L 
Sbjct: 109 LPQSLKSLLVDNNNLKALSD-LPPLLEYL------GVSNNQLE 144

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 15/94 (15%)

Query: 47  KIPDI-----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLE 101
           ++P++     LT I   NN   + +P    +L   + +   NN L+  +P  L NL  L 
Sbjct: 187 ELPELQNLPFLTAIYADNNSL-KKLPDLPLSL---ESIVAGNNILE-ELPE-LQNLPFLT 240

Query: 102 SLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           ++   NN     +P     L  L   NV DNYLT
Sbjct: 241 TIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT 270

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 18/102 (17%)

Query: 52  LTGIILSNNRFDEAIPASISNL-------------KGLQVLNLHNNNLQGHIPSCLGNLT 98
            T    + + ++   P                   +    L L+N  L   +P    +L 
Sbjct: 36  KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL- 93

Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ 140
             ESL  S N  +  +P+    L  L   N +   L+   P 
Sbjct: 94  --ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL 132

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 31/119 (26%)

Query: 43  MTYNKIPDI------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
           ++ NK+ ++      L  +I S N   E +P    NLK    L++  N L+   P    +
Sbjct: 324 VSNNKLIELPALPPRLERLIASFNHLAE-VPELPQNLK---QLHVEYNPLR-EFPDIPES 378

Query: 97  LT----------------NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           +                 NL+ L +  N      P     +  L    ++   +  P  
Sbjct: 379 VEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 18/97 (18%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL-------------T 98
           L   +  ++   E +P    N+K         +  + + P   G                
Sbjct: 13  LQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
               L+L+N   S  +P+    L  L     S N LT
Sbjct: 72  QAHELELNNLGLS-SLPELPPHLESL---VASCNSLT 104

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 18/97 (18%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-----CLGN--------LT 98
           L  + + +N   + +P    +L  L V     + L    P+        N          
Sbjct: 259 LEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPP 317

Query: 99  NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           +LE L++SNNK    +P     L  L     S N+L 
Sbjct: 318 SLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 26/101 (25%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT------------- 98
           LT I   NN   + +P    +L+ L V + +  +L    P    +LT             
Sbjct: 239 LTTIYADNNLL-KTLPDLPPSLEALNVRDNYLTDL----PELPQSLTFLDVSENIFSGLS 293

Query: 99  ----NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
               NL  L+ S+N+    +      L  L   NVS+N L 
Sbjct: 294 ELPPNLYYLNASSNEIR-SLCDLPPSLEEL---NVSNNKLI 330

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 67  PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF 126
           P ++SN   LQ    H++NL   +P    N+ +      + +++    P    E   +  
Sbjct: 5   PRNVSNTF-LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 127 FNVSDNYLTG 136
             + D     
Sbjct: 63  SRLRDCLDRQ 72

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 27/115 (23%)

Query: 43  MTYNKIPDI------LTGIILSNNRFDEAIPASISNLK----------------GLQVLN 80
            ++N + ++      L  + +  N   E  P    +++                 L+ L+
Sbjct: 344 ASFNHLAEVPELPQNLKQLHVEYNPLRE-FPDIPESVEDLRMNSHLAEVPELPQNLKQLH 402

Query: 81  LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           +  N L+   P    ++ +L    +++ +              LE      ++  
Sbjct: 403 VETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + +SNNR   A+      +  L+VL+L +N+L  H+         LE+L L +N   
Sbjct: 280 LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +         L+   +S N   
Sbjct: 338 -TLKLST--HHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 3e-10
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 10/98 (10%)

Query: 45  YNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
           +N I  +       LT + L +N   +   A + N  GL  ++L  N L+  +      +
Sbjct: 220 HNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
             LE L +SNN+    +      +  L+  ++S N+L 
Sbjct: 278 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 14/105 (13%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           +   +I +I          +  + +  N      P    N+  L VL L  N+L   +P 
Sbjct: 82  LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPR 140

Query: 93  -CLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNVSDNYLT 135
               N   L +L +SNN    RI        T L+   +S N LT
Sbjct: 141 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 7/86 (8%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           LT ++L  N    ++P  I  N   L  L++ NNNL+  I        T+L++L LS+N+
Sbjct: 125 LTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 182

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLT 135
            +  +   L  +  L   NVS N L+
Sbjct: 183 LT-HVDLSL--IPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 8/85 (9%), Positives = 28/85 (32%)

Query: 51  ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           +   + +     D         L   +++   N+ ++    + L +   +E L+L++ + 
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLT 135
                        ++   +  N + 
Sbjct: 88  EEIDTYAFAYAHTIQKLYMGFNAIR 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 9e-07
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 11/84 (13%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS+NR    +   +S +  L   N+  N L     S L     +E LD S+N  +
Sbjct: 173 LQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 224

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
                  VELT L    +  N LT
Sbjct: 225 VVRGPVNVELTIL---KLQHNNLT 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 18/100 (18%), Positives = 36/100 (36%), Gaps = 5/100 (5%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L           ++S+L GL VL L + N+          L  L+ L++S+  + 
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
             +    +    L   +++   LT  +P         +  
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTA-VPYL----AVRHLV 248

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP     + L  NR         ++   L+ L L+ N +    P    NL NL +L L +
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89

Query: 108 NKFSGRIPQQ-LVELTFLEFFNVSDNYLT 135
           N+    IP      L+ L   ++S+N + 
Sbjct: 90  NRLK-LIPLGVFTGLSNLTKLDISENKIV 117

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 14/105 (13%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIP 91
           +  N +  +          L  + L +NR  + IP  + + L  L  L++  N +   + 
Sbjct: 63  LNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIVILLD 121

Query: 92  SCLGNLTNLESLDLSNNKFSGRIPQQ-LVELTFLEFFNVSDNYLT 135
               +L NL+SL++ +N     I  +    L  LE   +    LT
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 4e-09
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC-LGNLTNLESLDLSNNKF 110
           LT + +++         ++ +L  L+ LNL  N +   I    L  L  L+ + L   + 
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

Query: 111 SGRIPQQ-LVELTFLEFFNVSDNYLT 135
           +  +       L +L   NVS N LT
Sbjct: 285 A-VVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
               RF  A+P  I      ++L+L  N ++        +  +LE L+L+ N  S   P 
Sbjct: 18  CHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG 74

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
               L  L    +  N L   IP G     F   S
Sbjct: 75  AFNNLFNLRTLGLRSNRLKL-IPLG----VFTGLS 104

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           ++YN I  I          L  I L   +     P +   L  L+VLN+  N L     S
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314

Query: 93  CLGNLTNLESLDLSNNKFS 111
              ++ NLE+L L +N  +
Sbjct: 315 VFHSVGNLETLILDSNPLA 333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 58.6 bits (142), Expect = 2e-10
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           I      + L  N+       S  +L+ L++L L  N+++         L NL +L+L +
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 108 NKFSGRIPQQ-LVELTFLEFFNVSDNYLT 135
           N+ +  IP    V L+ L+   + +N + 
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 10/99 (10%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL 94
           +    + +I        L  + LS N      P S   L  LQ L +  + +Q    +  
Sbjct: 192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF 251

Query: 95  GNLTNLESLDLSNNKFSGRIPQQLVE-LTFLEFFNVSDN 132
            NL +L  ++L++N  +  +P  L   L  LE  ++  N
Sbjct: 252 DNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 9e-09
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           L  + L NN   E+IP+   + +  L+ L+L       +I       L+NL  L+L+   
Sbjct: 138 LKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN 196

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
               IP  L  L  L+  ++S N+L+  I  G
Sbjct: 197 LR-EIP-NLTPLIKLDELDLSGNHLSA-IRPG 225

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 4e-10
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 48  IPDI---LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESL 103
           +P++   +  + LS N   E    S S L+ LQ L +        I +     L++L  L
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 104 DLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG-PIPQGKQFATFDN 149
            L  N+F          L  LE   ++   L G  +        F  
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN----FFKP 127

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 15/103 (14%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           +    LS ++   A+  S+ S+   L+ L L  N +   I       LT+L  L+LS N 
Sbjct: 277 VKTCDLSKSKI-FALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNF 334

Query: 110 FS---GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
                 R+ + L +L  L   ++S N++   +       +F  
Sbjct: 335 LGSIDSRMFENLDKLEVL---DLSYNHIRA-LGDQ----SFLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 8/84 (9%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHI--PSCLGNLTNLESLDLSNN 108
           L  + L  N+F   +     + L  L+VL L   NL G +   +    LT+LE L L +N
Sbjct: 81  LIILKLDYNQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 109 KFS----GRIPQQLVELTFLEFFN 128
                        +     L+   
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTF 163

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIP 91
           +  N+I  I          L  + LS N    +I + +  NL  L+VL+L  N+++  + 
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALG 363

Query: 92  SCL-GNLTNLESLDLSNNK 109
                 L NL+ L L  N+
Sbjct: 364 DQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + LS N    A+       L  L+ L L  N L+         LT+L+ + L  N +
Sbjct: 349 LEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 20/115 (17%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 52  LTGIILSNNRFDEAIPASI-----------SNLKGLQVLNLHNNNLQGHIPSCLGNLTNL 100
              + L+ N+   +I                 L  + + +++   L           T++
Sbjct: 156 FHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 101 ESLDLSNNKFSGRIPQ---QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSF 152
            +LDLS N F   + +     +  T ++   +S++Y  G       F   DN +F
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC- 93
           +    I D+        L  + +S N F E  P S   L  L+ L + N+ +   I    
Sbjct: 203 LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNA 261

Query: 94  LGNLTNLESLDLSNNKFSGRIPQQLVE-LTFLEFFNVSDN 132
              L +L  L+L++N  S  +P  L   L +L   ++  N
Sbjct: 262 FDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 8e-10
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLS 106
           IP     + L  N        +  +L  L+VL L  N+++  I       L +L +L+L 
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELF 131

Query: 107 NNKFSGRIPQQ-LVELTFLEFFNVSDNYLT 135
           +N  +  IP      L+ L    + +N + 
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L      + +P  ++ L GL+ L +  N+     P     L++L+ L + N++ S
Sbjct: 198 LKYLNLGMCNI-KDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
                    L  L   N++ N L+  +P  
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSS-LPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 9e-09
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           L  + L NN   E+IP+   + +  L  L+L       +I       L NL+ L+L    
Sbjct: 149 LRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 110 FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
               +P  L  L  LE   +S N+    I  G
Sbjct: 208 IK-DMP-NLTPLVGLEELEMSGNHFPE-IRPG 236

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 7e-08
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 10/96 (10%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
            +       +P  I      + LNL  NN+Q        +L +LE L L  N    +I  
Sbjct: 61  CTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEV 116

Query: 117 Q-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
                L  L    + DN+LT  IP G     F+  S
Sbjct: 117 GAFNGLASLNTLELFDNWLTV-IPSG----AFEYLS 147

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT + L  NR       +   L  L  L LH N +    P    +L  L +L L  N  S
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 112 GRIPQQ-LVELTFLEFFNVSDN 132
             +P + L  L  L++  ++DN
Sbjct: 215 -ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 27/103 (26%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP     I L  NR      AS    + L +L LH+N L     +    L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 108 NKFSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           N     +       L  L   ++    L   +  G     F  
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPG----LFRG 127

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           L  + L      + +   +   L  LQ L L +N LQ  +P     +L NL  L L  N+
Sbjct: 107 LHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164

Query: 110 FSGRIPQQ-LVELTFLEFFNVSDNYLT 135
            S  +P++    L  L+   +  N + 
Sbjct: 165 IS-SVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L +N        +  +L  L  L LH N +          L +L+ L L  N+ +
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
              P    +L  L    +  N L+  +P  
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSA-LPTE 219

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.7 bits (136), Expect = 1e-09
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 52  LTGIILSNNRFDEAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           LT + + N +  + +    +  L  L+ L +  + L+   P        L  L+LS N  
Sbjct: 33  LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92

Query: 111 SGRIPQQLVELTFLEFFNVSDNYLT 135
              +  + V+   L+   +S N L 
Sbjct: 93  E-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 1e-08
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 8/95 (8%)

Query: 59  NNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQ 117
                      +   + L  L + N     H+    L  L  L +L +  +     +   
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74

Query: 118 -LVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
                  L   N+S N L   +       T    S
Sbjct: 75  AFHFTPRLSRLNLSFNALES-LSWK----TVQGLS 104

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 24/133 (18%)

Query: 42  MMTYNKIPDI----------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHI 90
           ++++N +  I          L  + LS+N     +   + S+L+ L+VL L+NN++   +
Sbjct: 70  LLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHIV-VV 127

Query: 91  PS-CLGNLTNLESLDLSNNKFSGRIP----QQLVELTFLEFFNVSDNYLTGPIPQGKQFA 145
                 ++  L+ L LS N+ S R P    +   +L  L   ++S N L   +P      
Sbjct: 128 DRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLT---- 181

Query: 146 TFDNTSFDANSGL 158
                     +GL
Sbjct: 182 DLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 12/106 (11%)

Query: 48  IPDILTGIILSNNRFDEAIPASI--SNLKGLQVLNLHNNNLQGHIPSC-LGNLTNLESLD 104
           +P     + LS+N     + A    + L  L  L L +N+L   I S     + NL  LD
Sbjct: 37  LPSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94

Query: 105 LSNNKFSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           LS+N     + +    +L  LE   + +N++   + +      F++
Sbjct: 95  LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRN----AFED 134

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 17/103 (16%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIP 91
           ++ N +  +          L  ++L NN     +  +   ++  LQ L L  N +    P
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFP 152

Query: 92  ----SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130
                    L  L  LDLS+NK        L +L       + 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 14/99 (14%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            N + ++        +  + L++ +  +  P  ++ L  LQVL L  N +  +I   L  
Sbjct: 94  GNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NISP-LAG 149

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           LTNL+ L + N + S   P  L  L+ L      DN ++
Sbjct: 150 LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 43  MTYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL 94
              + + D         +T +          I   +  L  L  L L +N +   + + L
Sbjct: 26  AGKSNVTDTVTQADLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDNQIT-DL-APL 81

Query: 95  GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            NLT +  L+LS N         +  L  ++  +++   +T
Sbjct: 82  KNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
             ++ D+        LT +   +N+  +  P  +++L  L  ++L NN +    P  L N
Sbjct: 160 NAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN 215

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPI 138
            +NL  + L+N   + +       L               P 
Sbjct: 216 TSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 6/82 (7%)

Query: 54  GIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR 113
           G I      +   P     L     +    +N+         +L  + +L       +  
Sbjct: 1   GSITQPTAINVIFP--DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-T 55

Query: 114 IPQQLVELTFLEFFNVSDNYLT 135
           I   +  L  L    + DN +T
Sbjct: 56  IE-GVQYLNNLIGLELKDNQIT 76

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P     + LS N   E     IS L  L+VL L +N ++           +LE LD+S+
Sbjct: 50  LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQF 144
           N+        +  L  L   ++S N     +P  K+F
Sbjct: 110 NRLQNISCCPMASLRHL---DLSFNDFDV-LPVCKEF 142

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.4 bits (123), Expect = 9e-08
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 47  KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDL 105
            +P  +  + L NNR   +IP  +++L+ LQ LN+ +N L+  +P      LT+L+ + L
Sbjct: 447 CLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWL 504

Query: 106 SNNKF 110
            +N +
Sbjct: 505 HDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 14/79 (17%), Positives = 29/79 (36%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           + N  F  +  A  S    + +  L  ++       C  + ++   L+ + N F+  + Q
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 117 QLVELTFLEFFNVSDNYLT 135
               L  L+   +  N L 
Sbjct: 372 GCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 76  LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           + VLNL +N L G +  CL     ++ LDL NN+    IP+ +  L  L+  NV+ N L 
Sbjct: 430 ILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

Query: 136 GPIPQGKQFATFDN 149
             +P G     FD 
Sbjct: 487 S-VPDG----VFDR 495

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSC--LGNLTNLESLDLSNNK 109
           L  + +S+NR  + I      +  L+ L+L  N+    +P C   GNLT L  L LS  K
Sbjct: 102 LEYLDVSHNRL-QNISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAK 157

Query: 110 FSGRIPQQLVELTFLEFF-NVSDNYLTG 136
           F       +  L       ++   ++ G
Sbjct: 158 FRQLDLLPVAHLHLSCILLDLVSYHIKG 185

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ--GHIPSCLGNLTNLESLDL 105
            P   T +  + N F +++    S LK LQ L L  N L+    +     N+++LE+LD+
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV 410

Query: 106 SNNKFSGRIPQQLVEL-TFLEFFNVSDNYLT 135
           S N  +     +       +   N+S N LT
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLT 441

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 5/100 (5%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLS 106
           + + +  + LSNNR      + +     LQ L L +N +   I      +L +LE LDLS
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108

Query: 107 NNKFSGRIPQQL-VELTFLEFFNVSDNYLTGPIPQGKQFA 145
            N  S  +       L+ L F N+  N     + +   F+
Sbjct: 109 YNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + + N      I     + L  L+ L +  ++LQ + P  L ++ N+  L L   + 
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210

Query: 111 SGRIPQQLVE-LTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL 158
              + +  V+  + +E   + D  L         F+       ++    
Sbjct: 211 I-LLLEIFVDVTSSVECLELRDTDLDTF-----HFSELSTGETNSLIKK 253

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
            S+   + +IP+ ++  + ++ L+L NN +     S L    NL++L L++N  +     
Sbjct: 38  GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
               L  LE  ++S NYL+  +        F   S
Sbjct: 95  SFSSLGSLEHLDLSYNYLSN-LSSS----WFKPLS 124

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 14/106 (13%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG----HIPSC----LGNLTNLESL 103
           ++ +IL   +    +   +     ++ L L + +L       + +     L       ++
Sbjct: 200 VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259

Query: 104 DLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
            +++     ++ + L +++ L     S N L   +P G     FD 
Sbjct: 260 KITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDG----IFDR 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIP--SCLGNLTNLESLDLSNN 108
           L  + LS N     + +S    L  L  LNL  N  +  +   S   +LT L+ L + N 
Sbjct: 102 LEHLDLSYNYL-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM 159

Query: 109 KFSGRIPQQLVE-LTFLEFFNVSDNYLT 135
               +I ++    LTFLE   +  + L 
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQ 187

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
              + +++      +   ++ + GL  L    N L+         LT+L+ + L  N +
Sbjct: 256 FRNVKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 52  LTGIILSNNRFDEAIPASIS--------NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 103
           +  + L +   D    + +S             + + + + +L   +   L  ++ L  L
Sbjct: 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 104 DLSNNKFSGRIPQQLVE-LTFLEFFNVSDN 132
           + S N+    +P  + + LT L+   +  N
Sbjct: 283 EFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 14/102 (13%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + LS+N+  +++P     L  L VL++  N L       L  L  L+ L L  N+  
Sbjct: 79  LGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137

Query: 112 GRIP----QQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
             +P        +L  L   ++++N LT  +P G      + 
Sbjct: 138 -TLPPGLLTPTPKLEKL---SLANNNLTE-LPAG----LLNG 170

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 29/102 (28%), Positives = 40/102 (39%), Gaps = 8/102 (7%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P   T + LS N       A++     L  LNL    L   +    G L  L +LDLS+
Sbjct: 29  LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSH 86

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           N+    +P     L  L   +VS N LT  +P G        
Sbjct: 87  NQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLG----ALRG 122

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           L  + L  N   + +P  + +    L+ L+L NNNL   +P+  L  L NL++L L  N 
Sbjct: 126 LQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183

Query: 110 FSGRIPQQLVELTFLEFFNVSDN 132
               IP+       L F  +  N
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
              +         A+P  +   K   +L+L  N L     + L   T L  L+L   + +
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 112 GRIP--QQLVELTFLEFFNVSDNYLT 135
            ++     L  L  L   ++S N L 
Sbjct: 69  -KLQVDGTLPVLGTL---DLSHNQLQ 90

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 34  MTMNSKGRMMTYNKIPDILTGIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           M M  +  +   N+ P  +  ++L N+R +   +       + L+ L+  N  L   I +
Sbjct: 1   MEMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-A 58

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            L  L  L+ L+LS+N+ SG +     +   L   N+S N + 
Sbjct: 59  NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 7e-08
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 50  DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
           + L  +   N        A++  L  L+ L L +N + G +        NL  L+LS NK
Sbjct: 42  EELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 110 FSG-RIPQQLVELTFLEFFNVSDN 132
                  + L +L  L+  ++ + 
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNC 123

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            NK+ DI        L  + L  N+  +     + +LK L+ L+L +N +   I   L +
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-DING-LVH 132

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           L  LESL L NNK +      L  LT L+  ++ DN ++
Sbjct: 133 LPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 12/101 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            NKI DI        L  + L +N+  + +P  ++ L  LQ L L  N++   +   L  
Sbjct: 143 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DL-RALAG 198

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGP 137
           L NL+ L+L + +   +       L        +D  L  P
Sbjct: 199 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 46  NKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
             I  I             L      +A+    + L  +  +  +N++++  +   +  L
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL 67

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            N+  L L+ NK +  I   L  L  L +  + +N + 
Sbjct: 68  PNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK 103

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 33  SMTMNSKGRMMTYNKIPDILTGIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIP 91
            M M  +  +   N+ P  +  ++L N + +   I    +    L+ L+L N  L   + 
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV- 64

Query: 92  SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           S L  L  L+ L+LS N+  G +     +L  L   N+S N L 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L N        +++  L  L+ L L  N + G +      L NL  L+LS NK  
Sbjct: 51  LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 112 G-RIPQQLVELTFLEFFNVSDN 132
                + L +L  L+  ++ + 
Sbjct: 109 DISTLEPLKKLECLKSLDLFNC 130

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 14/112 (12%)

Query: 43  MTYNKIPDI----------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIP 91
               K+  I          L  I +S N   E I A + SNL  L  + +   N   +I 
Sbjct: 37  FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96

Query: 92  S-CLGNLTNLESLDLSNNKFSGRIPQQL-VELTFLEFFNVSDNYLTGPIPQG 141
                NL NL+ L +SN      +P    +        ++ DN     I + 
Sbjct: 97  PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLS 106
           +P     +     +       + S    L+ + +  N++   I +    NL  L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 107 N-NKFSGRIPQQLVELTFLEFFNVSDNYLT 135
             N      P+    L  L++  +S+  + 
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 16/112 (14%)

Query: 33  SMTMNSKGRMMTYNKIPDI----------LTGIILSNNRFDEAIPASISNLKGLQVLNLH 82
            ++  S    +  N I +I              +  NN  +E          G  +L++ 
Sbjct: 151 GLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 83  NNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNY 133
              +   +PS  L NL  L +    N K   ++P  L +L  L   +++   
Sbjct: 211 RTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 52  LTGIILSNNRFDEAIPA-SISNLKG-LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK 109
              + + +N     I   S   L     +L L+ N +Q  I +   N T L+ L+LS+N 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN 188

Query: 110 FSGRIPQQ-LVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
               +P       +     ++S   +   +P        +N
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIH-SLPSY----GLEN 224

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 22/107 (20%)

Query: 45  YNKIPDI----------LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS- 92
           +N +  +          L  + LS     + I      +L  L  L L  N +Q  +   
Sbjct: 37  FNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQ-SLALG 94

Query: 93  CLGNLTNLESLDLSNNKFSGRIP----QQLVELTFLEFFNVSDNYLT 135
               L++L+ L       +  +       L  L  L   NV+ N + 
Sbjct: 95  AFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL---NVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L+ +IL+ N   +++     S L  LQ L     NL       +G+L  L+ L++++N  
Sbjct: 78  LSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 111 SGRIPQ-----QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
                       L  L  L   ++S N +   I           
Sbjct: 137 Q-SFKLPEYFSNLTNLEHL---DLSSNKIQS-IYCT----DLRV 171

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLS 106
           +P     + LS N        S  +   LQVL+L    +Q  I      +L++L +L L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84

Query: 107 NNKFS---GRIPQQLVELTFL 124
            N            L  L  L
Sbjct: 85  GNPIQSLALGAFSGLSSLQKL 105

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP----QQLVE 120
            IP ++      + L+L  N L+        +   L+ LDLS  +    I     Q L  
Sbjct: 21  KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 121 LTFLEFFNVSDNYLTGPIPQGKQFATFDNTS 151
           L+ L    ++ N +   +  G     F   S
Sbjct: 78  LSTL---ILTGNPIQS-LALG----AFSGLS 100

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           LS N  +   P +   ++ L+ L L  N L+         LT+L+ + L  N
Sbjct: 184 LSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 9/87 (10%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQV----LNLHNNNLQGHIPSCLGNLTNLESLDLS 106
           L  + LS+N+  ++I  +    L  + +    L+L  N +   I         L+ L L 
Sbjct: 151 LEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALD 208

Query: 107 NNKFSGRIPQQ-LVELTFLEFFNVSDN 132
            N+    +P      LT L+   +  N
Sbjct: 209 TNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P+ +T I L  N      P + S  K L+ ++L NN +    P     L +L SL L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           NK +         L  L+   ++ N +   +        F +
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINC-LRVD----AFQD 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           L  ++L  N+    +P S+   L  LQ+L L+ N +   +      +L NL  L L +NK
Sbjct: 82  LNSLVLYGNKI-TELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNK 139

Query: 110 FS 111
             
Sbjct: 140 LQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 15/89 (16%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP----QQLVE 120
            IP ++     +  + L  N ++   P        L  +DLSNN+ S  +     Q L  
Sbjct: 25  EIPTNLPE--TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 121 LTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           L  L    +  N +T  +P+      F+ 
Sbjct: 82  LNSL---VLYGNKITE-LPKS----LFEG 102

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           L  ++L+ N+    +      +L  L +L+L++N LQ         L  ++++ L+ N
Sbjct: 106 LQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 7e-08
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 14/99 (14%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            + I  +        +T + L+ N+  +  P  ++NLK L  L L  N ++  + S L +
Sbjct: 52  NSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DL-SSLKD 107

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           L  L+SL L +N  S  I   LV L  LE   + +N +T
Sbjct: 108 LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 51.6 bits (123), Expect = 8e-08
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 12/103 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            NKI DI        L  + L +N+  + +P  ++ L  LQ L L  N++       L  
Sbjct: 140 NNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS--DLRALAG 195

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
           L NL+ L+L + +   +       L        +D  L  P  
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 14/98 (14%)

Query: 46  NKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
             I  I             L      +A+    + L  +  +  +N++++  +   +  L
Sbjct: 9   TPIKQIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYL 64

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            N+  L L+ NK +  I + L  L  L +  + +N + 
Sbjct: 65  PNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKIK 100

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 9e-05
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            N+I DI        L  + LS N   +     ++ LK L VL L +        +   N
Sbjct: 162 DNQISDIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           L    ++  ++       P+ + +    E  NV  +   
Sbjct: 220 LVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 46  NKIPDI---------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            KIP I            I  S+N   +        L+ L+ L ++NN +          
Sbjct: 29  YKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86

Query: 97  LTNLESLDLSNNKFSG-RIPQQLVELTFLEFFNVSDN 132
           L +L  L L+NN          L  L  L +  +  N
Sbjct: 87  LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 42  MM--TYNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP 91
           M+  T   I              + L   +    I    + L     ++  +N ++    
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKL-- 57

Query: 92  SCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
                L  L++L ++NN+           L  L    +++N L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT +   N+     +   I  L GL  L   +NN+   +   L   TNL  L   +NK +
Sbjct: 44  LTSLDCHNSSI-TDMTG-IEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLT 98

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +   +  LT L + N   N LT
Sbjct: 99  -NLD--VTPLTKLTYLNCDTNKLT 119

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 40  GRMMTYNK-IPDI-LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
           G+  ++N   PD      + +          S   L  L  L+ HN+++     + +  L
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKL 63

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           T L  L  ++N  +  +   L + T L +     N LT
Sbjct: 64  TGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT 98

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 16/98 (16%)

Query: 45  YNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
           +NKI ++       L  +    N   + +   ++    L  L+  +N L   I   +  L
Sbjct: 179 FNKITELDVSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLT-EID--VTPL 232

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           T L   D S N  +      L +LT L   +     L 
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 9/84 (10%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT +I ++N     +   +S    L  L   +N L  ++   +  LT L  L+   NK +
Sbjct: 66  LTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT 119

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
                Q   LT+L   N + N LT
Sbjct: 120 KLDVSQNPLLTYL---NCARNTLT 140

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           LT +  + N   E     +S+   L  L+ H N     +   +   T L +LD S NK +
Sbjct: 129 LTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
             +   + +   L   N   N +T
Sbjct: 184 E-LD--VSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  +          +   +S    L  L L+N  L   +   + + T L+SL   N    
Sbjct: 299 LYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ 352

Query: 112 GRIPQQLVELTFLEFFNVSDNYLT 135
                 + ++  L     ++    
Sbjct: 353 D-FS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 15/98 (15%)

Query: 45  YNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
            N + ++       LT +        E I   +++   L             +   + + 
Sbjct: 242 VNPLTELDVSTLSKLTTLHCIQTDLLE-ID--LTHNTQLIYFQAEGCRKIKELD--VTHN 296

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           T L  LD      +  +   L +   L +  +++  LT
Sbjct: 297 TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 45  YNKIPDI-------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
            NK+ +I       LT    S N   E +   +S L  L  L+    +L   I   L + 
Sbjct: 221 SNKLTEIDVTPLTQLTYFDCSVNPLTE-LD--VSTLSKLTTLHCIQTDLL-EID--LTHN 274

Query: 98  TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
           T L        +    +   +   T L   +     +T
Sbjct: 275 TQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 19/101 (18%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKG--LQVLNLHNNNLQGHIPSCL 94
           +N+I D+        L  + ++ NR       +++ +    L  L L NN L+      L
Sbjct: 72  HNQISDLSPLKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD--TDSL 124

Query: 95  GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT 135
            +L NLE L + NNK    I   L  L+ LE  ++  N +T
Sbjct: 125 IHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 45  YNKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGN 96
            N++ D         L  + + NN+    +   +  L  L+VL+LH N +       L  
Sbjct: 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGG--LTR 170

Query: 97  LTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPI 138
           L  +  +DL+  K      +   EL         D     P 
Sbjct: 171 LKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 11/80 (13%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 56  ILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 115
           I      ++  P     L      NL   ++   +      L+ +++ +  N+     + 
Sbjct: 3   IQRPTPINQVFP--DPGLANAVKQNLGKQSVT-DL-VSQKELSGVQNFNGDNSNIQ-SL- 56

Query: 116 QQLVELTFLEFFNVSDNYLT 135
             +   T L+  ++S N ++
Sbjct: 57  AGMQFFTNLKELHLSHNQIS 76

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 49.6 bits (117), Expect = 3e-07
 Identities = 8/76 (10%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 52  LTGIILSNNRFDEAIPASISN---LKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLD 104
           L  + + +      +         L  L+ +++    L       +   +  + +L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 105 LSNNKFSGRIPQQLVE 120
           +  N  S  + ++L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 48.8 bits (115), Expect = 5e-07
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 71  SNLKGLQVLNLHNNNLQGHIPSCLGN---LTNLESLDLSNNKFSGRIPQQLVE----LTF 123
                L+ L + +   Q  +         L  LE++D+S    +    + L++    +  
Sbjct: 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH 308

Query: 124 LEFFNVSDNYLT 135
           L+F N+  NYL+
Sbjct: 309 LKFINMKYNYLS 320

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLS 106
           +P     + L           + SNL  +  + +  +     + S    NL+ +  +++ 
Sbjct: 29  LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88

Query: 107 NNKFSGRIPQQ-LVELTFLEFFNVSDNYLT 135
           N +    I    L EL  L+F  + +  L 
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNTGLK 118

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIP--SCLGNLTNLESLDLSNN 108
           +T I + N R    I       L  L+ L + N  L+   P  + + +      L++++N
Sbjct: 82  VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDN 140

Query: 109 KFSGRIP 115
            +   IP
Sbjct: 141 PYMTSIP 147

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 5/90 (5%)

Query: 50  DILTGIILSNNRFDEAIPA-SISNL-KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           DI   + +++N +  +IP  +   L      L L+NN     +     N T L+++ L+ 
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188

Query: 108 NKFSGRIPQQLVE--LTFLEFFNVSDNYLT 135
           NK+   I +       +     +VS   +T
Sbjct: 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP     + L +        A+   L  L  LNL  N LQ        +LT L +L L+N
Sbjct: 33  IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 108 NKFS---GRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
           N+ +     +   L +L  L    +  N L   +P G
Sbjct: 93  NQLASLPLGVFDHLTQLDKL---YLGGNQLKS-LPSG 125

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 9/100 (9%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + L+NN+   ++P  +  +L  L  L L  N L+         LT L+ L L+ N+ 
Sbjct: 85  LGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143

Query: 111 SGRIPQQLVE-LTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
              IP    + LT L+  ++S N L   +P G     FD 
Sbjct: 144 Q-SIPAGAFDKLTNLQTLSLSTNQLQS-VPHG----AFDR 177

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 46  NKIPDI--------LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNL 97
           N I  I        L  + L  N   + I    +    L+ L +  N +   + S +  L
Sbjct: 58  NNIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIA-SL-SGIEKL 114

Query: 98  TNLESLDLSNNKFSG-RIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFA 145
            NL  L +SNNK +      +L  L  LE   ++ N L     +    +
Sbjct: 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 4/75 (5%)

Query: 61  RFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE 120
            F+E      +  + ++ L+     ++  + + L  L   + L LS N    +I   L  
Sbjct: 13  IFEERKSVVATEAEKVE-LHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KI-SSLSG 68

Query: 121 LTFLEFFNVSDNYLT 135
           +  L   ++  N + 
Sbjct: 69  MENLRILSLGRNLIK 83

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  + +++N+  +A+P  +   L  L  L L  N L+   P    +LT L  L L  N+ 
Sbjct: 87  LETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145

Query: 111 SGRIPQ----QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
              +P+    +L  L  L    + +N L   +P+G     FD 
Sbjct: 146 Q-SLPKGVFDKLTSLKEL---RLYNNQLKR-VPEG----AFDK 179

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP     + L +N+       +   L  L++L L++N LQ         L NLE+L +++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 108 NKFS---GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           NK       +  QLV L  L    +  N L   +P       FD+
Sbjct: 95  NKLQALPIGVFDQLVNLAEL---RLDRNQLKS-LPPR----VFDS 131

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS---GRIPQQLVEL 121
           AIP++I      + L+L +N L          LT L  L L++NK       I ++L  L
Sbjct: 30  AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87

Query: 122 TFLEFFNVSDNYLT 135
             L    V+DN L 
Sbjct: 88  ETL---WVTDNKLQ 98

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           L  + L NN+  + +P      L  L+ L L NN L+        +L  L+ L L  N
Sbjct: 159 LKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           LT + L  N   +++P  +   L  L+ L L+NN L+         LT L++L L NN+ 
Sbjct: 135 LTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 111 SGRIPQQLVELTFLEFFNVSDN 132
                     L  L+   + +N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 9/83 (10%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNK 109
           +  I+L++NR  E +   +   L+ L+ L L +N +   + +     L+++  L L +N+
Sbjct: 83  VNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQ 140

Query: 110 FSGRIP----QQLVELTFLEFFN 128
            +  +       L  L+ L    
Sbjct: 141 IT-TVAPGAFDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 16/90 (17%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSNNKFSGRIP----QQLV 119
            IP  I   +    L L+NN       +     L  L  ++ SNNK +  I     +   
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 120 ELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
            +  +    ++ N L   +        F  
Sbjct: 82  GVNEI---LLTSNRLEN-VQHK----MFKG 103

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN 108
           L  ++L +NR    +       L  +++L+L++N +    P     L +L +L+L  N
Sbjct: 107 LKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           ++P +         L L  NNL    P  L  L  L +  L  N +
Sbjct: 24  SLPTAFPV--DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP   T + L  N            L  L  L L  N LQ         LT+L  L+LS 
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 108 NKFSGRIPQ----QLVELTFLEFFNVSDNYLTGPIPQG 141
           N+    +P     +L +L  L    ++ N L   +P G
Sbjct: 86  NQLQ-SLPNGVFDKLTQLKEL---ALNTNQLQS-LPDG 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 14/107 (13%)

Query: 48  IPDILTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLS 106
           IP   T ++L++N         +   L  L  L L  N L G  P+     ++++ L L 
Sbjct: 27  IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86

Query: 107 NNKFSGRIPQ----QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
            NK    I       L +L  L   N+ DN ++  +  G    +F++
Sbjct: 87  ENKIK-EISNKMFLGLHQLKTL---NLYDNQISC-VMPG----SFEH 124

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 52  LTGIILSNNRF-DEAIPASISNLKGLQVLNLHNNNLQ----GHIPSCLGNLTNLESLDLS 106
           +  + +      D      +  L+  QV+ L +  L       I S L     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 107 NNKFS 111
           +N+  
Sbjct: 65  SNELG 69

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 14/98 (14%)

Query: 52  LTGIILSNNRF-DEAIPASISNLK----GLQVLNLHNNNLQ----GHIPSCLGNLTNLES 102
           L  + L +N   D  +   +  L+     +Q L+L N  L     G + S L  L  L+ 
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 103 LDLSNNKFSGRIPQQLVEL-----TFLEFFNVSDNYLT 135
           L LS+N       Q L E        LE   +    L+
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 52  LTGIILSNNRF-DEAI----PASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLES 102
           L  + L+ N   DE         +     L+ L + + +       H  S L     L  
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345

Query: 103 LDLSNNKFSGRIPQQLVEL-----TFLEFFNVSDNYLT 135
           L +SNN+      ++L +      + L    ++D  ++
Sbjct: 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 14/98 (14%)

Query: 52  LTGIILSNNRFDEA-----IPASISNLKGLQVLNLHNNNLQ----GHIPSCLGNLTNLES 102
           L  + L +N+  +       P  +     L+ L +    +     G +   L    +L+ 
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 103 LDLSNNKFSGRIPQQLVEL-----TFLEFFNVSDNYLT 135
           L L+ N+      + L E        LE   V     T
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 52  LTGIILSNNRF-DEAIPASISNLK----GLQVLNLHNNNLQ----GHIPSCLGNLTNLES 102
              + +SNN   +  +      LK     L+ L L +  +       +   + +  +L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 103 LDLSNNKFSGRIPQQLVE-----LTFLEFFNVSDNYLT 135
           L L +NK       +L        + L    + +  +T
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 9/98 (9%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP     + L +N+  +  P    +L  L+ L L +N L         +LT L  LDL  
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 108 NKFSGRIPQ----QLVELTFLEFFNVSDNYLTGPIPQG 141
           N+ +  +P     +LV L  L    +  N LT  +P+G
Sbjct: 98  NQLT-VLPSAVFDRLVHLKEL---FMCCNKLTE-LPRG 130

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 15/103 (14%)

Query: 52  LTGIILSNNRFDEAIPASISN-LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           L  ++L  N+  +++P  + + L  L  LNL +N LQ         LTNL  LDLS N+ 
Sbjct: 111 LKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169

Query: 111 SGRIPQ----QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
              +P+    +L +L  L  +    N L   +P G     FD 
Sbjct: 170 Q-SLPEGVFDKLTQLKDLRLYQ---NQLKS-VPDG----VFDR 203

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 16/90 (17%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG---NLTNLESLDLSNN 108
           +  II +N+   +++   I  L  ++ L L  N L       +     LTNL  L L+ N
Sbjct: 43  IDQIIANNSDI-KSVQG-IQYLPNVRYLALGGNKLHD-----ISALKELTNLTYLILTGN 95

Query: 109 KFS---GRIPQQLVELTFLEFFNVSDNYLT 135
           +       +  +L  L  L    + +N L 
Sbjct: 96  QLQSLPNGVFDKLTNLKEL---VLVENQLQ 122

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 18/102 (17%)

Query: 52  LTGIILSNNRFD----EAIPASISNLKGLQVLNLHNNNLQ----------GHIPSCLGNL 97
           +  I+LS N         +  +I++ K L++    +                +   L   
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 98  TNLESLDLSNNKFSGRIPQQLVEL----TFLEFFNVSDNYLT 135
             L ++ LS+N F     + L++     T LE   + +N L 
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 52  LTGIILSNNRFD----EAIPASISNLKGLQVLNLHNNNL--QG--HIPSCLGNLTNLESL 103
           + G  L  +       +++ A +     ++ + L  N +  +    +   + +  +LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 104 DLSNNKFSGRIPQQ-----------LVELTFLEFFNVSDNYLT 135
           + S+  F+GR+  +           L++   L    +SDN   
Sbjct: 66  EFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 22/106 (20%)

Query: 52  LTGIILSNNRFDEA-------------IPASISNLKGLQVLNLHNNNLQG----HIPSCL 94
           L  + L NN                  +     N   L+ +    N L+           
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183

Query: 95  GNLTNLESLDLSNNKF-----SGRIPQQLVELTFLEFFNVSDNYLT 135
            +   L ++ +  N          + + L     L+  ++ DN  T
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 52  LTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           LT I LSNNR    +     SN+  L  L L  N L+   P     L +L  L L  N  
Sbjct: 56  LTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114

Query: 111 SGRIPQ 116
           S  +P+
Sbjct: 115 S-VVPE 119

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP----QQLVE 120
            +P  I   + +  L L  N     +P  L N  +L  +DLSNN+ S  +       + +
Sbjct: 24  VLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQ 79

Query: 121 LTFLEFFNVSDNYLTGPIPQG 141
           L  L    +S N L   IP  
Sbjct: 80  LLTL---ILSYNRLRC-IPPR 96

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 15/89 (16%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ----QLVE 120
           ++P  I      QVL L++N +    P     LT L  LDL NN+ +  +P     +L +
Sbjct: 23  SVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQ 79

Query: 121 LTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           LT L   +   N L   IP+G     FDN
Sbjct: 80  LTQLSLND---NQLKS-IPRG----AFDN 100

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 63  DEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
              +   +S    LQ L+L    L   I + L   +NL  L+LS 
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 7/103 (6%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           IP   T + L +N+           L  L  L+L  N +Q         LT L  L L  
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 108 NKFSGRIPQQLVE-LTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           NK    +P  + + LT L+   +  N L   +P G     FD 
Sbjct: 86  NKLQ-SLPNGVFDKLTQLKELALDTNQLKS-VPDG----IFDR 122

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ----QLVE 120
           ++P  I +      L L +N LQ         LT L  L LS N+    +P     +L +
Sbjct: 21  SVPTGIPS--SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTK 77

Query: 121 LTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           LT L    + +N L   +P G     FD 
Sbjct: 78  LTIL---YLHENKLQS-LPNG----VFDK 98

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 15/89 (16%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ----QLVE 120
           ++PA I      Q L L+NN +    P    +L NL+ L  ++NK +  IP     +L +
Sbjct: 26  SVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQ 82

Query: 121 LTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
           LT L+  +   N+L   IP+G     FDN
Sbjct: 83  LTQLDLND---NHLKS-IPRG----AFDN 103

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 38.8 bits (90), Expect = 7e-04
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 55  IILSNNRFDEAIPASIS-NLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFS 111
           ++L+      A    I  N+  L  LNL NN L     + S +    NL+ L+LS N+  
Sbjct: 150 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTG 136
                   EL  ++   + + +L G
Sbjct: 210 -----SERELDKIKGLKLEELWLDG 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.85
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.72
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.72
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.69
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.67
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.66
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.62
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.62
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.62
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.61
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.6
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.59
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.58
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.57
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.55
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.55
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.54
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.54
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.53
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.53
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.53
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.53
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.52
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.5
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.48
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.46
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.45
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.45
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.45
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.44
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.43
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.43
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.42
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.41
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.41
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.4
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.4
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.4
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.38
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.38
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.36
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.27
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.2
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.07
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.02
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.97
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.7
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.33
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.11
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.86
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.54
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.53
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.3
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.34
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.31
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.05
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.12
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	80.42

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.85  E-value=7.4e-22  Score=185.95  Aligned_cols=123  Identities=41%  Similarity=0.689  Sum_probs=117.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|||++|+++|.+|..++.++.|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|+
T Consensus       631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~  710 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID  710 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred             cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCCCCCCCCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGCESGEA  172 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c~~~~~  172 (241)
                      +++|+++|.+|...++.++....+.||+++||.|.. .|....+
T Consensus       711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~  753 (768)
T 3rgz_A          711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA  753 (768)
T ss_dssp             CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred             CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCcc
Confidence            999999999999999999999999999999999987 7976544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=8.3e-19  Score=166.76  Aligned_cols=92  Identities=29%  Similarity=0.421  Sum_probs=64.2

Q ss_pred             hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCcc
Q 026255           68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF  147 (241)
Q Consensus        68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l  147 (241)
                      ..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+.  ++|+.|++++|++++..|..  +..+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L  549 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSL  549 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSC
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCc
Confidence            3455666667777777777766666667777777777777777754444443  66777777777777666644  4578


Q ss_pred             CcccccCCCCCCCCCC
Q 026255          148 DNTSFDANSGLCGRPL  163 (241)
Q Consensus       148 ~~~~~~~n~~lc~~~~  163 (241)
                      ..+++.+||+.|+|+.
T Consensus       550 ~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          550 SVLDITHNKFICECEL  565 (844)
T ss_dssp             CEEEEEEECCCCSSSC
T ss_pred             CEEEecCCCccccccc
Confidence            8899999999997754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=6.1e-19  Score=149.37  Aligned_cols=114  Identities=38%  Similarity=0.585  Sum_probs=103.2

Q ss_pred             ccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccC
Q 026255           52 LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD  131 (241)
Q Consensus        52 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  131 (241)
                      |++|++++|.+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++
T Consensus       199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            88888888888888888888999999999999999866665 78899999999999999999999999999999999999


Q ss_pred             CcccCCCCCCCccCccCcccccCCCCCCCCCCCCCC
Q 026255          132 NYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGC  167 (241)
Q Consensus       132 N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c  167 (241)
                      |+++|.+|....++.+..+++.+|+++||.|.. .|
T Consensus       278 N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~C  312 (313)
T 1ogq_A          278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             SEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             CcccccCCCCccccccChHHhcCCCCccCCCCC-CC
Confidence            999999999888999999999999999998775 36

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=6.5e-18  Score=136.10  Aligned_cols=116  Identities=24%  Similarity=0.262  Sum_probs=103.5

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|++|+|++|.|++..|..|..+++|++|+|++|.++...+..|..+++|+.|++++|++++..|..|..+++|++|
T Consensus        54 ~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           54 PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            36789999999999999889999999999999999999996666668899999999999999998888899999999999


Q ss_pred             eccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255          128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      ++++|.+++..+.. ..+..+..+++.+|++.|+|..
T Consensus       134 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             ECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999999766643 4577888999999999998753

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1e-17  Score=134.90  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=105.8

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|+.|+|++|.|++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            47889999999999999888899999999999999999998888889999999999999999998889999999999999


Q ss_pred             eccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255          128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      ++++|.+++..|.. ..+..+..+++.+|++.|+++.
T Consensus       135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            99999999877754 4577888999999999998753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=4e-17  Score=135.38  Aligned_cols=159  Identities=19%  Similarity=0.157  Sum_probs=125.6

Q ss_pred             CCCCCCccccccccCCCCccccc-ccc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCCc
Q 026255            4 FNTSELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGLQ   77 (241)
Q Consensus         4 ~~~~~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~   77 (241)
                      ..+.+++.|+.++++.|.++... +..  ....+.++...+....   ..-+++|++|++++|.+++..+..+..+++|+
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            44667788888899988887532 111  2233333333333222   23368899999999999988888889999999


Q ss_pred             eEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCC
Q 026255           78 VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANS  156 (241)
Q Consensus        78 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~  156 (241)
                      +|++++|.+++..+..++.+++|+.|++++|++++..+..+..+++|++|++++|.+++..|.. ..+..+..+++.+|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence            9999999999777777899999999999999999777777889999999999999999776654 567889999999999


Q ss_pred             CCCCCC
Q 026255          157 GLCGRP  162 (241)
Q Consensus       157 ~lc~~~  162 (241)
                      +.|.+|
T Consensus       217 ~~~~~~  222 (272)
T 3rfs_A          217 WDCTCP  222 (272)
T ss_dssp             BCCCTT
T ss_pred             ccccCc
Confidence            998876

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=4.3e-17  Score=132.01  Aligned_cols=114  Identities=20%  Similarity=0.258  Sum_probs=100.2

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|++|+|++|.|.+..+..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|+++ .+|..+..+++|++|
T Consensus        62 ~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A           62 SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL  140 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEE
T ss_pred             CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEE
Confidence            3678999999999998877777899999999999999999777777899999999999999999 889889999999999


Q ss_pred             eccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      ++++|++++..+.. ..+..+..+++.+|++.|.++
T Consensus       141 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          141 ALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            99999999655432 457788899999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=5.5e-17  Score=132.93  Aligned_cols=113  Identities=21%  Similarity=0.227  Sum_probs=98.3

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|
T Consensus        81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence            36789999999999998888888999999999999999997777778899999999999999997666678899999999


Q ss_pred             eccCCcccCCCCCC-CccCccCcccccCCCCCCC
Q 026255          128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCG  160 (241)
Q Consensus       128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~  160 (241)
                      ++++|.+++..+.. ..+..+..+++.+|++.|.
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999999666533 4567888999999999887

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.1e-17  Score=131.93  Aligned_cols=117  Identities=22%  Similarity=0.356  Sum_probs=100.3

Q ss_pred             ccCcCccEEEccCCCCCccchh-hhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255           47 KIPDILTGIILSNNRFDEAIPA-SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE  125 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  125 (241)
                      .++.++++|++++|.|++..+. .|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..|..+++|+
T Consensus        26 ~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  105 (192)
T 1w8a_A           26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLK  105 (192)
T ss_dssp             CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCC
T ss_pred             CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            4456899999999999886654 488999999999999999988889999999999999999999987777788899999


Q ss_pred             eEeccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255          126 FFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       126 ~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      +|++++|++++..|.. ..+..+..+++++|++.|.++.
T Consensus       106 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A          106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             EEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999999999877764 4567888899999999988753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=130.68  Aligned_cols=123  Identities=24%  Similarity=0.338  Sum_probs=105.7

Q ss_pred             cccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhH
Q 026255           39 KGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL  118 (241)
Q Consensus        39 ~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  118 (241)
                      .++......+++++++|++++|.|+. +|..|..+++|+.|+|++|.+++..+..|..+++|+.|++++|++++..|..|
T Consensus        20 ~~l~~ip~~~~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f   98 (193)
T 2wfh_A           20 KGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF   98 (193)
T ss_dssp             SCCSSCCSCCCTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred             CCCCcCCCCCCCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHh
Confidence            33333334456789999999999985 67889999999999999999998888889999999999999999998777889


Q ss_pred             hhccccceEeccCCcccCCCCC-CCccCccCcccccCCCCCCCCC
Q 026255          119 VELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       119 ~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      ..+++|++|++++|.+++..+. ...+..+..+++.+|++.|+|.
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           99 DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            9999999999999999955543 2457888999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.72  E-value=4.5e-17  Score=136.53  Aligned_cols=158  Identities=18%  Similarity=0.115  Sum_probs=115.9

Q ss_pred             CCCCCccccccccCCCCccccccc---ceeEEEEEeeccccccc--CccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVLG---TYDYSMTMNSKGRMMTY--NKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      .+.+++.|+.++++.|.++.....   .....++++...+....  ..-+++|++|++++|++++..+..|..+++|++|
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L  129 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL  129 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred             HhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence            355667777777777777643221   11222333333322111  1236789999999999998777889999999999


Q ss_pred             ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255           80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC  159 (241)
Q Consensus        80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc  159 (241)
                      ++++|.+++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|+++...+.......+..+.+.+||+.|
T Consensus       130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            99999999777777888999999999999999555556778999999999999998433333556678889999999999


Q ss_pred             CCC
Q 026255          160 GRP  162 (241)
Q Consensus       160 ~~~  162 (241)
                      +|.
T Consensus       210 ~c~  212 (290)
T 1p9a_G          210 NCE  212 (290)
T ss_dssp             SGG
T ss_pred             cCc
Confidence            864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.72  E-value=5.7e-17  Score=134.22  Aligned_cols=158  Identities=18%  Similarity=0.146  Sum_probs=115.9

Q ss_pred             CCCCCccccccccCCCCcccccccc-----eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGL   76 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L   76 (241)
                      .+.+++.|+.++++.|.++......     ....+.++...+....   ..-+++|++|++++|.+++..+..|..+++|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            3566777778888888776543221     2233333333332222   2336788899999999988777778888999


Q ss_pred             ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCC
Q 026255           77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDAN  155 (241)
Q Consensus        77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n  155 (241)
                      ++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|.+++..+.. ..+..+..+++.+|
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            99999999998666666888899999999999998666667888899999999999988554432 45677888899999


Q ss_pred             CCCCCCC
Q 026255          156 SGLCGRP  162 (241)
Q Consensus       156 ~~lc~~~  162 (241)
                      |+.|+|.
T Consensus       216 ~~~c~c~  222 (270)
T 2o6q_A          216 PWDCTCN  222 (270)
T ss_dssp             CBCCSSS
T ss_pred             CeeCCCc
Confidence            9988875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=2.5e-16  Score=125.29  Aligned_cols=115  Identities=23%  Similarity=0.252  Sum_probs=99.7

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence            36789999999999998777778999999999999999997666678999999999999999997666678889999999


Q ss_pred             eccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          128 NVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       128 ~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      ++++|.+++..+.. ..+..+..+++.+|++.|.++
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99999999665543 557888999999999988765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.69  E-value=1.4e-16  Score=123.66  Aligned_cols=118  Identities=22%  Similarity=0.246  Sum_probs=102.0

Q ss_pred             cCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255           45 YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL  124 (241)
Q Consensus        45 ~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  124 (241)
                      ...+++++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|
T Consensus        23 p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  102 (177)
T 2o6r_A           23 PTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL  102 (177)
T ss_dssp             CTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCccc
Confidence            34456789999999999998777788999999999999999997777778999999999999999997766778899999


Q ss_pred             ceEeccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          125 EFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       125 ~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      ++|++++|.+++..+.. ..+..+..+++.+|++.|.++
T Consensus       103 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          103 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999999999655543 457888999999999988764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.67  E-value=1.7e-16  Score=145.02  Aligned_cols=116  Identities=21%  Similarity=0.293  Sum_probs=103.3

Q ss_pred             ccCcCccEEEccCCCC-CccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255           47 KIPDILTGIILSNNRF-DEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE  125 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  125 (241)
                      ..++.+++|++++|.+ .+..|..|..+++|+.|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|+
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence            3477899999999975 445778899999999999999999988999999999999999999999988888899999999


Q ss_pred             eEeccCCcccCCCCCCC-cc-CccCcccccCCCCCCCCC
Q 026255          126 FFNVSDNYLTGPIPQGK-QF-ATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       126 ~L~l~~N~l~g~~p~~~-~~-~~l~~~~~~~n~~lc~~~  162 (241)
                      +|++++|++++..|... .+ .++..+++++||+.|+|.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999998888653 33 578889999999999885

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.66  E-value=1.6e-16  Score=132.38  Aligned_cols=159  Identities=16%  Similarity=0.136  Sum_probs=122.3

Q ss_pred             CCCCCccccccccCCCC-cccccc---cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCC
Q 026255            5 NTSELRYLQDVLFPYGQ-VSSNVL---GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKG   75 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~-l~~~~~---~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~   75 (241)
                      .+.+++.|+.++++.|. ++....   ..  ....+.++...+....   ..-+++|++|++++|.+.+..+..+..+++
T Consensus        75 ~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (285)
T ss_dssp             TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence            46778888889999886 654322   11  2233333333332221   233678999999999999877777899999


Q ss_pred             CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccC
Q 026255           76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDA  154 (241)
Q Consensus        76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~  154 (241)
                      |+.|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. ...+..+..+++++
T Consensus       155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCS
T ss_pred             ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccC
Confidence            99999999999966666789999999999999999988888899999999999999999965543 35567888899999


Q ss_pred             CCCCCCCCC
Q 026255          155 NSGLCGRPL  163 (241)
Q Consensus       155 n~~lc~~~~  163 (241)
                      |++.|+++.
T Consensus       235 N~~~c~~~~  243 (285)
T 1ozn_A          235 NPWVCDCRA  243 (285)
T ss_dssp             SCEECSGGG
T ss_pred             CCccCCCCc
Confidence            999998754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.66  E-value=2.9e-16  Score=138.67  Aligned_cols=114  Identities=24%  Similarity=0.228  Sum_probs=101.6

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+.+..|..|..+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|+
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  377 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA  377 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEE
Confidence            67899999999999988888899999999999999999988888899999999999999999988888899999999999


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      +++|++++..+.. ..++.+..+++++|++.|.+|
T Consensus       378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999655543 467888999999999999887

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=1.7e-15  Score=119.31  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=95.5

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      .-+++|++|+|++|.|++..|..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..|..+..+++|++
T Consensus        51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  130 (192)
T 1w8a_A           51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred             ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence            34788999999999999988999999999999999999999888888999999999999999999988999999999999


Q ss_pred             EeccCCcccCCCCCCCccCccCcccccCCCCCCCCCC
Q 026255          127 FNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       127 L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      |++++|++.+..+.......+....+.++...|+.|.
T Consensus       131 L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             EECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             EEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence            9999999997655221111122223444555565443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.62  E-value=8.6e-16  Score=129.05  Aligned_cols=157  Identities=18%  Similarity=0.240  Sum_probs=114.4

Q ss_pred             CCCCccccccccCCCCcccccc----cc--eeEEEEEeecccccccC---ccCcCccEEEccCCCCCc-cchhhhcCCCC
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTYN---KIPDILTGIILSNNRFDE-AIPASISNLKG   75 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~~n~i~~-~~p~~~~~l~~   75 (241)
                      +.+++.|+.++++.|.++....    ..  ....+.++...+.....   .-+++|++|++++|.+.+ ..|..+..+++
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  176 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  176 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence            4567778888888888765432    11  12223333222222221   235788899999998876 56778888899


Q ss_pred             CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-Ccc-CccCccccc
Q 026255           76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQF-ATFDNTSFD  153 (241)
Q Consensus        76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~-~~l~~~~~~  153 (241)
                      |+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|.. ..+ ..+..++++
T Consensus       177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence            999999999998777888888899999999999988666667888889999999999998777654 333 377888889


Q ss_pred             CCCCCCCCC
Q 026255          154 ANSGLCGRP  162 (241)
Q Consensus       154 ~n~~lc~~~  162 (241)
                      +|++.|+++
T Consensus       257 ~N~~~~~c~  265 (306)
T 2z66_A          257 QNDFACTCE  265 (306)
T ss_dssp             TCCEECSGG
T ss_pred             CCCeecccC
Confidence            998888754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.62  E-value=7e-16  Score=141.01  Aligned_cols=158  Identities=16%  Similarity=0.140  Sum_probs=124.9

Q ss_pred             CCCCCccccccccCCCCcccccc----cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCc-cchhhhcCCC
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDE-AIPASISNLK   74 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~-~~p~~~~~l~   74 (241)
                      .+.++++|+.++++.|.++....    ..  ....+.++...+....   ..-+++|++|++++|.+.+ .+|..+..++
T Consensus       394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  473 (606)
T 3vq2_A          394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT  473 (606)
T ss_dssp             CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence            45677888888888888765422    11  2223333333332222   2336889999999999987 4788899999


Q ss_pred             CCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccC-ccCcccc
Q 026255           75 GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFA-TFDNTSF  152 (241)
Q Consensus        75 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~-~l~~~~~  152 (241)
                      +|+.|++++|.+++..|..++.+++|+.|++++|++++..|..+..+++|+.|++++|+++ .+|.. ..+. .+..+++
T Consensus       474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l  552 (606)
T 3vq2_A          474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNL  552 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEc
Confidence            9999999999999888999999999999999999999888999999999999999999999 55554 3444 4888999


Q ss_pred             cCCCCCCCCCC
Q 026255          153 DANSGLCGRPL  163 (241)
Q Consensus       153 ~~n~~lc~~~~  163 (241)
                      ++|++.|+|+.
T Consensus       553 ~~N~~~c~c~~  563 (606)
T 3vq2_A          553 TNNSVACICEH  563 (606)
T ss_dssp             CSCCCCCSSTT
T ss_pred             cCCCcccCCcc
Confidence            99999998874

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.62  E-value=2.4e-15  Score=128.08  Aligned_cols=107  Identities=21%  Similarity=0.258  Sum_probs=57.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcC---------CCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHh
Q 026255           49 PDILTGIILSNNRFDEAIPASISN---------LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLV  119 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  119 (241)
                      +++|++|++++|++.+.+|..+..         +++|+.|++++|.++ .+|..++.+++|++|++++|+++ .+|..+.
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~  226 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH  226 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGG
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhc
Confidence            445555566555555555544432         555555555555555 55555555555555555555555 3444455


Q ss_pred             hccccceEeccCCcccCCCCCC-CccCccCcccccCCCC
Q 026255          120 ELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSG  157 (241)
Q Consensus       120 ~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~  157 (241)
                      .+++|++|++++|.+.+.+|.. ..+..+..+++.+|..
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~  265 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN  265 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT
T ss_pred             cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc
Confidence            5555555555555555555543 3344455555555443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.62  E-value=8.9e-16  Score=136.00  Aligned_cols=113  Identities=19%  Similarity=0.184  Sum_probs=98.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|.+++. | .+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|+
T Consensus       195 l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  272 (452)
T 3zyi_A          195 LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN  272 (452)
T ss_dssp             CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence            67889999999999774 3 478889999999999999988899999999999999999999988888899999999999


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      +++|++++..+.. ..+..+..+++++||+.|+|..
T Consensus       273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             CCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             CCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            9999999655543 4577888999999999998863

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.61  E-value=5.6e-16  Score=133.59  Aligned_cols=151  Identities=18%  Similarity=0.090  Sum_probs=106.0

Q ss_pred             ccccccCCCCcccccccc------eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255           12 LQDVLFPYGQVSSNVLGT------YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH   82 (241)
Q Consensus        12 L~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls   82 (241)
                      ++.++++.|+++......      ....+.++...+....   ..-+++|++|+|++|.|++..+..|..+++|+.|+|+
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  120 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY  120 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence            556777777776533221      1223333333332221   2336789999999999988777788999999999999


Q ss_pred             cCcCCCCCccccCCCCccceeeccCCcCCCCCchhH---hhccccceEeccCCcccCCCCCC-CccCc--cCcccccCCC
Q 026255           83 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL---VELTFLEFFNVSDNYLTGPIPQG-KQFAT--FDNTSFDANS  156 (241)
Q Consensus        83 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l---~~l~~L~~L~l~~N~l~g~~p~~-~~~~~--l~~~~~~~n~  156 (241)
                      +|.+++..|..|..+++|+.|+|++|++++..+..+   ..+++|+.|++++|++++..+.. ..+..  +..+++.+|+
T Consensus       121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence            999998788889999999999999999995433334   56889999999999998433221 12222  3568899999


Q ss_pred             CCCCCC
Q 026255          157 GLCGRP  162 (241)
Q Consensus       157 ~lc~~~  162 (241)
                      +.|+|.
T Consensus       201 ~~C~C~  206 (361)
T 2xot_A          201 LECDCK  206 (361)
T ss_dssp             EECCHH
T ss_pred             ccCCcC
Confidence            999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.61  E-value=7.1e-15  Score=121.74  Aligned_cols=153  Identities=20%  Similarity=0.174  Sum_probs=112.9

Q ss_pred             CCCCccccccccCCCCccccc-ccce--eEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255            6 TSELRYLQDVLFPYGQVSSNV-LGTY--DYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      ...++.|+.++++.+.++... +...  ...+.++...+.. ....-+++|++|++++|.+++..+..+..+++|++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            445677778888888876533 2222  2223333222211 11233678999999999998877777889999999999


Q ss_pred             ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255           82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus        82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      ++|.+++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|.+++..+.. ..+..+..+++.+|...
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            999999777777889999999999999999766667788999999999999998666544 45678888888888643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.61  E-value=2.2e-15  Score=121.20  Aligned_cols=128  Identities=14%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             ccccccCCCCcccccc----cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255           12 LQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH   82 (241)
Q Consensus        12 L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls   82 (241)
                      ++.++++.|+++....    ..  ....+.++...+....   ..-+++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR  113 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence            4556677777665421    11  1222333333322211   2337889999999999999888889999999999999


Q ss_pred             cCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCC
Q 026255           83 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP  139 (241)
Q Consensus        83 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p  139 (241)
                      +|.+++..|..|..+++|+.|++++|++++..|..|..+++|+.|++++|++.+..+
T Consensus       114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            999998889999999999999999999998889999999999999999999986543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=2.5e-15  Score=124.51  Aligned_cols=74  Identities=32%  Similarity=0.401  Sum_probs=40.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC-CccccCCCCccceeeccCCcCCCCCchhHhhcc
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH-IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT  122 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  122 (241)
                      +++|++|++++|.+.+..+..+..+++|+.|++++|.+++. +|..++.+++|++|++++|++++..+..+..++
T Consensus        99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  173 (276)
T 2z62_A           99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH  173 (276)
T ss_dssp             CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH
T ss_pred             CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh
Confidence            44555555555555554444455555666666666665532 355555566666666666665544444444333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=5.2e-16  Score=139.07  Aligned_cols=110  Identities=19%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             CcCccEEEccCCCCCccchhhhc-CCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASIS-NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|+.|+|++|.+++..|..+. .+++|+.|+|++|.+++. |. +..+++|+.|++++|.+++ +|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L  219 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI  219 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred             CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence            56677777777777776666664 677777777777777744 32 3457888899999999985 44458889999999


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR  161 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~  161 (241)
                      ++++|.+++..+....+..+..+++.+|++.|++
T Consensus       220 ~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             ECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             EecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            9999999864444456678888999999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.60  E-value=4.1e-15  Score=119.59  Aligned_cols=124  Identities=22%  Similarity=0.257  Sum_probs=104.6

Q ss_pred             EEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC
Q 026255           35 TMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI  114 (241)
Q Consensus        35 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  114 (241)
                      .+...++...+..++++++.|++++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|++|+|++|+++...
T Consensus        17 ~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~   96 (220)
T 2v9t_B           17 DCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP   96 (220)
T ss_dssp             ECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred             EcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence            34444444444456789999999999999988888999999999999999999888999999999999999999999655


Q ss_pred             chhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255          115 PQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       115 p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      +..|..+++|++|++++|.+++..|.. ..+..+..+++++|...
T Consensus        97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            566788999999999999999876654 45678888999998643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.60  E-value=3e-15  Score=132.15  Aligned_cols=112  Identities=21%  Similarity=0.203  Sum_probs=96.7

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|.++. +| .+..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus       184 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          184 LSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN  261 (440)
T ss_dssp             CSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred             ccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence            6788888888888876 44 477888999999999999988888999999999999999999988888899999999999


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      +++|++++..+.. ..+..+..+++++||+.|+|.
T Consensus       262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             CTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             CCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            9999999655543 457788899999999999884

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.60  E-value=5.6e-15  Score=119.51  Aligned_cols=124  Identities=23%  Similarity=0.282  Sum_probs=104.5

Q ss_pred             EEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCC
Q 026255           34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR  113 (241)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  113 (241)
                      ++|+..++......++++|++|+|++|.|++..|..|..+++|+.|+|++|.++...+..|..+++|+.|++++|++++.
T Consensus        24 v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l  103 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL  103 (229)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             eEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc
Confidence            44444445555556788999999999999998899999999999999999999966667789999999999999999977


Q ss_pred             CchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255          114 IPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       114 ~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      .+..|..+++|++|++++|.++ .+|.. ..+..+..+++++|...
T Consensus       104 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             ChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            6777889999999999999999 56544 56778888999998643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.60  E-value=1e-14  Score=119.31  Aligned_cols=110  Identities=22%  Similarity=0.211  Sum_probs=88.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            67888888988888887777788888888999999888877777788888889999999888866666677888888999


Q ss_pred             ccCCcccCCCCC-CCccCccCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQ-GKQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~l  158 (241)
                      +++|.+++..+. ...+..+..+++++|...
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            998888865553 345677888888888543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=5.2e-15  Score=114.35  Aligned_cols=94  Identities=22%  Similarity=0.264  Sum_probs=72.2

Q ss_pred             CccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255           46 NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE  125 (241)
Q Consensus        46 ~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  125 (241)
                      ..+++++++|+|++|.|++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+
T Consensus        26 ~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  105 (170)
T 3g39_A           26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT  105 (170)
T ss_dssp             SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence            34567788888888888887777788888888888888888866666677888888888888888865555677788888


Q ss_pred             eEeccCCcccCCCC
Q 026255          126 FFNVSDNYLTGPIP  139 (241)
Q Consensus       126 ~L~l~~N~l~g~~p  139 (241)
                      +|++++|+++...+
T Consensus       106 ~L~L~~N~~~c~c~  119 (170)
T 3g39_A          106 HIWLLNNPWDCACS  119 (170)
T ss_dssp             EEECCSSCBCTTBG
T ss_pred             EEEeCCCCCCCCch
Confidence            88888888875443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.59  E-value=6.4e-15  Score=125.44  Aligned_cols=155  Identities=16%  Similarity=0.196  Sum_probs=118.0

Q ss_pred             CCCCccccccccCCCCcccccc--cc--eeEEEEEeeccccccc-Cc-----------cCcCccEEEccCCCCCccchhh
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL--GT--YDYSMTMNSKGRMMTY-NK-----------IPDILTGIILSNNRFDEAIPAS   69 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~--~~--~~~~~~~~~~~~~~~~-~~-----------~~~~L~~L~L~~n~i~~~~p~~   69 (241)
                      +.++++|+.++++.|.++....  ..  ....+.++........ ..           -+++|++|++++|.++ .+|..
T Consensus       123 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~  201 (328)
T 4fcg_A          123 MQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS  201 (328)
T ss_dssp             GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGG
T ss_pred             HhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHh
Confidence            5677788888888888874321  11  2333444442222111 11           1778999999999998 57788


Q ss_pred             hcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccC
Q 026255           70 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFD  148 (241)
Q Consensus        70 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~  148 (241)
                      +..+++|+.|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ..+..+.
T Consensus       202 l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             GGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCC
T ss_pred             hcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCC
Confidence            999999999999999999 56677899999999999999999899998999999999999999988888865 5667888


Q ss_pred             cccccCCCCCCCCC
Q 026255          149 NTSFDANSGLCGRP  162 (241)
Q Consensus       149 ~~~~~~n~~lc~~~  162 (241)
                      .+++++|+.....|
T Consensus       281 ~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          281 KLDLRGCVNLSRLP  294 (328)
T ss_dssp             EEECTTCTTCCCCC
T ss_pred             EEeCCCCCchhhcc
Confidence            88898887665444

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=3.3e-15  Score=136.44  Aligned_cols=124  Identities=17%  Similarity=0.088  Sum_probs=93.2

Q ss_pred             EEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCC
Q 026255           34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR  113 (241)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  113 (241)
                      ++|+..++...+..+++++++|||++|+|+++.+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++.
T Consensus        36 ~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l  115 (635)
T 4g8a_A           36 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL  115 (635)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             EECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC
Confidence            45666666666667777888888888888877777788888888888888888866667788888888888888888865


Q ss_pred             CchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255          114 IPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSG  157 (241)
Q Consensus       114 ~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~  157 (241)
                      .+..|..+++|++|++++|++++..+. ...+..+..+++++|..
T Consensus       116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l  160 (635)
T 4g8a_A          116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  160 (635)
T ss_dssp             CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcc
Confidence            556777888888888888888755443 24566677777777653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=3.5e-15  Score=140.46  Aligned_cols=154  Identities=26%  Similarity=0.293  Sum_probs=113.2

Q ss_pred             CccccccccCCCCccccccc---c--eeEEEEEeecccccc---cCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255            9 LRYLQDVLFPYGQVSSNVLG---T--YDYSMTMNSKGRMMT---YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN   80 (241)
Q Consensus         9 l~~L~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~~~~---~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~   80 (241)
                      ++.|+.++++.|.++.....   .  ....++++...+...   ...-+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            56677778888777642211   1  122233322222211   112367888889999988888888888888899999


Q ss_pred             cccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCCC
Q 026255           81 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLC  159 (241)
Q Consensus        81 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc  159 (241)
                      +++|.+++.+|..++.+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+..+..+++++|+..+
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g  552 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG  552 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence            9999988888888888888999999999988888888888888999999999888888765 456777888888887765


Q ss_pred             CCC
Q 026255          160 GRP  162 (241)
Q Consensus       160 ~~~  162 (241)
                      ..|
T Consensus       553 ~ip  555 (768)
T 3rgz_A          553 TIP  555 (768)
T ss_dssp             BCC
T ss_pred             cCC
Confidence            544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=6.6e-15  Score=113.77  Aligned_cols=109  Identities=24%  Similarity=0.241  Sum_probs=95.2

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      ..+++++++|.++. +|..+  .++|+.|+|++|.+++..|..|..+++|++|++++|+|++..+..|..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35789999999987 56555  3889999999999998889999999999999999999997766778899999999999


Q ss_pred             CCcccCCCCC-CCccCccCcccccCCCCCCCCC
Q 026255          131 DNYLTGPIPQ-GKQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       131 ~N~l~g~~p~-~~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      +|++++..+. ...+..+..+++.+|++.|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            9999976664 3567889999999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.58  E-value=1.6e-15  Score=128.37  Aligned_cols=110  Identities=19%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             CcCccEEEccCCCCCccchhhh-cCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASI-SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. |. ...+++|++|++++|+++ .+|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI  219 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEE
Confidence            4567777777777766555555 3567777777777777633 33 234778888888888888 445557788888888


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR  161 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~  161 (241)
                      ++++|.+++..+....+..+..+++++|++.|++
T Consensus       220 ~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~  253 (317)
T 3o53_A          220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (317)
T ss_dssp             ECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHH
T ss_pred             ECcCCcccchhhHhhcCCCCCEEEccCCCccCcC
Confidence            8888888843333345677888888888887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.57  E-value=1.3e-14  Score=123.14  Aligned_cols=152  Identities=19%  Similarity=0.235  Sum_probs=91.5

Q ss_pred             CCCccccccccCCCCcccccc-----c--ceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            7 SELRYLQDVLFPYGQVSSNVL-----G--TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      .+++.|+.++++.|.+.....     .  .....+.++...+......++++|++|++++|.+++..|..+..+++|+.|
T Consensus       142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  221 (330)
T 1xku_A          142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL  221 (330)
T ss_dssp             TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred             cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            445555566666665542110     0  112223333333332223334677777777777777666777777777777


Q ss_pred             ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC-------ccCccCcccc
Q 026255           80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK-------QFATFDNTSF  152 (241)
Q Consensus        80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~-------~~~~l~~~~~  152 (241)
                      ++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+...       ....+..+++
T Consensus       222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l  300 (330)
T 1xku_A          222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  300 (330)
T ss_dssp             ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence            77777777666666777777777777777777 667667777777777777777774433221       1244555666


Q ss_pred             cCCCCCC
Q 026255          153 DANSGLC  159 (241)
Q Consensus       153 ~~n~~lc  159 (241)
                      .+||..+
T Consensus       301 ~~N~~~~  307 (330)
T 1xku_A          301 FSNPVQY  307 (330)
T ss_dssp             CSSSSCG
T ss_pred             ecCcccc
Confidence            7776544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=5.6e-15  Score=116.61  Aligned_cols=146  Identities=15%  Similarity=0.142  Sum_probs=90.4

Q ss_pred             CCccccccccCCCCccccc-ccc--eeEEEEEeecccc-cccCccCcCccEEEccCCCCCccchhhhcCCCCCceEeccc
Q 026255            8 ELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRM-MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHN   83 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~-~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~   83 (241)
                      .++.|+.++++.|.++... +..  ....+.++..... .....-+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            4556666777777666322 111  1122222222111 11122356777777777777766666777777777777777


Q ss_pred             CcCCCCCccccCCCCccceeeccCCc-CCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255           84 NNLQGHIPSCLGNLTNLESLDLSNNK-FSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus        84 N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      |.+++..|..++.+++|++|++++|+ ++ .+| .+..+++|+.|++++|.+++ ++....++.+..+++.+|+
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence            77776667777777777777777777 54 555 46777777777777777774 4444556667777777765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=4.4e-15  Score=134.48  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=124.0

Q ss_pred             CCCccccccccCCCCccccccc--c--eeEEEEEeeccccc----ccCccCcCccEEEccCCCCCccchhhhcCCCCCce
Q 026255            7 SELRYLQDVLFPYGQVSSNVLG--T--YDYSMTMNSKGRMM----TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQV   78 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~~----~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~   78 (241)
                      .++++|+.++++.|.++.....  .  ....+.+....+..    ....-+++|++|++++|.+.+..|..+..+++|+.
T Consensus       370 ~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  449 (570)
T 2z63_A          370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  449 (570)
T ss_dssp             HTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred             cccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence            4667888888888887643211  1  11112222211111    11234688999999999999989999999999999


Q ss_pred             EecccCcCC-CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCC
Q 026255           79 LNLHNNNLQ-GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANS  156 (241)
Q Consensus        79 L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~  156 (241)
                      |++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|++|++++|++++..|.. ..++.+..+++.+|+
T Consensus       450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence            999999997 578999999999999999999999888999999999999999999999876654 567888999999999


Q ss_pred             CCCCCCC
Q 026255          157 GLCGRPL  163 (241)
Q Consensus       157 ~lc~~~~  163 (241)
                      +.|.++.
T Consensus       530 ~~~~~~~  536 (570)
T 2z63_A          530 WDCSCPR  536 (570)
T ss_dssp             BCCCTTT
T ss_pred             ccCCCcc
Confidence            9998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.57  E-value=1.6e-14  Score=120.17  Aligned_cols=108  Identities=21%  Similarity=0.260  Sum_probs=62.5

Q ss_pred             CcCccEEEccCCC-CCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNR-FDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~-i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|++|++++|. +....|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEE
Confidence            4556666666665 555445556666666666666666665555556666666666666666664444445556666666


Q ss_pred             eccCCcccCCCCC-CCccCccCcccccCCC
Q 026255          128 NVSDNYLTGPIPQ-GKQFATFDNTSFDANS  156 (241)
Q Consensus       128 ~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~  156 (241)
                      ++++|.+++..+. ...+..+..+++++|.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCc
Confidence            6666666543332 2334555555555553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.56  E-value=6.9e-15  Score=136.22  Aligned_cols=158  Identities=15%  Similarity=0.101  Sum_probs=114.6

Q ss_pred             CCCCccccccccCCCCccccc-----cc--ceeEEEEEeeccccccc---CccCcCccEEEccCCCCCccch--------
Q 026255            6 TSELRYLQDVLFPYGQVSSNV-----LG--TYDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIP--------   67 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~-----~~--~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p--------   67 (241)
                      +.+++.|+.+++..|.++...     ..  .....++++...+....   ..-+++|++|++++|.+++..+        
T Consensus       450 ~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  529 (680)
T 1ziw_A          450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI  529 (680)
T ss_dssp             TTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCC
T ss_pred             hhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcc
Confidence            455667777777777664211     01  12233333333332222   2336789999999999976422        


Q ss_pred             hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC--ccC
Q 026255           68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK--QFA  145 (241)
Q Consensus        68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~--~~~  145 (241)
                      ..+..+++|+.|++++|.++...+..|..+++|+.|++++|++++..+..|..+++|+.|++++|++++..|...  .+.
T Consensus       530 ~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~  609 (680)
T 1ziw_A          530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR  609 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHT
T ss_pred             hhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccc
Confidence            237888999999999999994444568999999999999999996666667889999999999999997665432  467


Q ss_pred             ccCcccccCCCCCCCCCC
Q 026255          146 TFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       146 ~l~~~~~~~n~~lc~~~~  163 (241)
                      .+..+++++||+.|+|+.
T Consensus       610 ~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          610 NLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             TCSEEECTTCCCCBCCCC
T ss_pred             ccCEEEccCCCcccCCcc
Confidence            888999999999999864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.56  E-value=2.9e-14  Score=113.21  Aligned_cols=125  Identities=22%  Similarity=0.209  Sum_probs=103.7

Q ss_pred             EEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCC
Q 026255           34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR  113 (241)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  113 (241)
                      +.+...++......+++++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++.
T Consensus        12 v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~   91 (208)
T 2o6s_A           12 VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL   91 (208)
T ss_dssp             EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc
Confidence            33444444444556678999999999999987777889999999999999999976667789999999999999999966


Q ss_pred             CchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255          114 IPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       114 ~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      .+..+..+++|++|++++|.+++..+.. ..+..+..+++.+|...
T Consensus        92 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            6666889999999999999999666543 56788889999988643

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.56  E-value=3e-15  Score=126.55  Aligned_cols=150  Identities=20%  Similarity=0.229  Sum_probs=80.9

Q ss_pred             CCCCccccccccCCCCccccccc---c--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCC-CC
Q 026255            6 TSELRYLQDVLFPYGQVSSNVLG---T--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLK-GL   76 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~-~L   76 (241)
                      +.+++.|+.++++.|.++.....   .  ....++++...+....   ..-+++|++|++++|.+++.+|..+..++ +|
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L  176 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF  176 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC
Confidence            45666677777777766522111   1  1122222222221111   12245666666666666655666666665 66


Q ss_pred             ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255           77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus        77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      +.|++++|.+++.+|..+..+. |+.|++++|++++..|..+..+++|+.|++++|.+++.+|....+..+..+++++|.
T Consensus       177 ~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          177 TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred             cEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence            6666666666666666655554 666666666665555555555666666666666665555544444555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=1.4e-14  Score=112.33  Aligned_cols=103  Identities=21%  Similarity=0.230  Sum_probs=78.4

Q ss_pred             EEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC
Q 026255           35 TMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI  114 (241)
Q Consensus        35 ~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  114 (241)
                      +++..++...+..++++|++|+|++|.|++..|..|..+++|++|+|++|.+++..+..|..+++|++|+|++|+|++..
T Consensus        18 ~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~   97 (174)
T 2r9u_A           18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP   97 (174)
T ss_dssp             ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             EeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence            34444443344455678888888888888877888888888888888888888655556788888888888888888555


Q ss_pred             chhHhhccccceEeccCCcccCC
Q 026255          115 PQQLVELTFLEFFNVSDNYLTGP  137 (241)
Q Consensus       115 p~~l~~l~~L~~L~l~~N~l~g~  137 (241)
                      +..|..+++|++|++++|++...
T Consensus        98 ~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           98 RGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TTTTTTCTTCSEEECCSSCBCTT
T ss_pred             HHHhccccCCCEEEeCCCCcccc
Confidence            55578888888888888888744

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=1.7e-14  Score=111.91  Aligned_cols=108  Identities=24%  Similarity=0.258  Sum_probs=93.4

Q ss_pred             ccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccC
Q 026255           52 LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD  131 (241)
Q Consensus        52 L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~  131 (241)
                      -+.+++++|.+.. +|..+.  ++|+.|+|++|.+++..|..|+.+++|+.|+|++|+|++..+..|..+++|++|++++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4689999999966 666554  8999999999999988899999999999999999999966556678999999999999


Q ss_pred             CcccCCCCC-CCccCccCcccccCCCCCCCCC
Q 026255          132 NYLTGPIPQ-GKQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       132 N~l~g~~p~-~~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      |++++..+. ...+..+..+++.+|++.|.++
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            999966554 3567889999999999998764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.55  E-value=4.9e-15  Score=135.42  Aligned_cols=157  Identities=15%  Similarity=0.162  Sum_probs=124.1

Q ss_pred             CCCCCccccccccCCCCcccccc----cc--eeEEEEEeeccccccc---CccCcCccEEEccCCCCCcc---chhhhcC
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVL----GT--YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEA---IPASISN   72 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~----~~--~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~---~p~~~~~   72 (241)
                      .+.+++.|+.++++.|+++....    ..  ....+.++...+....   ..-+++|++|++++|.+.+.   .+..+..
T Consensus       395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~  474 (606)
T 3t6q_A          395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT  474 (606)
T ss_dssp             TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred             HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence            45678888889999998875432    11  2333444333333222   23378999999999999762   2356889


Q ss_pred             CCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCccc
Q 026255           73 LKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTS  151 (241)
Q Consensus        73 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~  151 (241)
                      +++|+.|++++|.+++..|..|+.+++|+.|++++|++++..|..+..++.| +|++++|++++..|.. ..+..+..++
T Consensus       475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~  553 (606)
T 3t6q_A          475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN  553 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE
T ss_pred             CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEe
Confidence            9999999999999998889999999999999999999999999999999999 9999999999777654 4567888999


Q ss_pred             ccCCCCCCCCC
Q 026255          152 FDANSGLCGRP  162 (241)
Q Consensus       152 ~~~n~~lc~~~  162 (241)
                      +++||+.|+|+
T Consensus       554 l~~N~~~c~c~  564 (606)
T 3t6q_A          554 LRQNPLDCTCS  564 (606)
T ss_dssp             CTTCCEECSGG
T ss_pred             CCCCCccccCC
Confidence            99999999875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.55  E-value=1.2e-14  Score=123.60  Aligned_cols=153  Identities=20%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             CCCCccccccccCCCCccccc--ccce----eEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            6 TSELRYLQDVLFPYGQVSSNV--LGTY----DYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      +.+++.|+.++++.|.++...  ...+    ...+.++...+......++++|++|++++|.+++..+..+..+++|+.|
T Consensus       143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  222 (332)
T 2ft3_A          143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRL  222 (332)
T ss_dssp             GSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCC
T ss_pred             hCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            455666666666666664211  1111    1111122222222222334678888888888888777778888888888


Q ss_pred             ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCC-------ccCccCcccc
Q 026255           80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGK-------QFATFDNTSF  152 (241)
Q Consensus        80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~-------~~~~l~~~~~  152 (241)
                      ++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..+...       ....+..+++
T Consensus       223 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             BCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             ECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence            88888888777777888888888888888888 778778888888888888888875443321       1344566777


Q ss_pred             cCCCCCC
Q 026255          153 DANSGLC  159 (241)
Q Consensus       153 ~~n~~lc  159 (241)
                      .+|+..+
T Consensus       302 ~~N~~~~  308 (332)
T 2ft3_A          302 FNNPVPY  308 (332)
T ss_dssp             CSSSSCG
T ss_pred             ecCcccc
Confidence            8887653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.55  E-value=1.9e-14  Score=124.82  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=92.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~  324 (390)
T 3o6n_A          247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  324 (390)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence            567888888888888877888888999999999999988 56777778899999999999998 6787788899999999


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR  161 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~  161 (241)
                      +++|.++.. | ...+..+..+++++|++.|.+
T Consensus       325 L~~N~i~~~-~-~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          325 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCcccee-C-chhhccCCEEEcCCCCccchh
Confidence            999999854 3 355678889999999998864

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.54  E-value=6.5e-14  Score=115.76  Aligned_cols=108  Identities=20%  Similarity=0.255  Sum_probs=61.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|++++..+..+..+++|+.|+
T Consensus        84 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A           84 LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeE
Confidence            45566666666666555555555666666666666666655555555666666666666666644334455566666666


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANS  156 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~  156 (241)
                      +++|.+++..+.. ..+..+..+++++|.
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~  192 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQ  192 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCCc
Confidence            6666665433321 334555555555553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.54  E-value=1.5e-14  Score=124.61  Aligned_cols=144  Identities=15%  Similarity=0.110  Sum_probs=97.9

Q ss_pred             ccccCCCCcccccc--cceeEEEEEeecccccccC---c-cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCC
Q 026255           14 DVLFPYGQVSSNVL--GTYDYSMTMNSKGRMMTYN---K-IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ   87 (241)
Q Consensus        14 ~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~---~-~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~   87 (241)
                      .++.+.+.++....  ......++++...+.....   . -+++|+.|+|++|.|++..+..|..+++|+.|+|++|.++
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH  101 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC
Confidence            34555555554321  2223334444444332222   1 4677888888888888877777888888888888888888


Q ss_pred             CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC----CccCccCcccccCCCC
Q 026255           88 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG----KQFATFDNTSFDANSG  157 (241)
Q Consensus        88 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~----~~~~~l~~~~~~~n~~  157 (241)
                      ...+..|..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..+..    ..+..+..+++++|..
T Consensus       102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            666667888888888888888888777778888888888888888888533222    2466777777777754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=129.34  Aligned_cols=112  Identities=22%  Similarity=0.264  Sum_probs=99.4

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      +|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..|..+++|+.|+++
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  304 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS  304 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence            78999999999988766789999999999999999998888889999999999999999998888999999999999999


Q ss_pred             CCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          131 DNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       131 ~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      +|.+++..+.. ..+..+..+++++|++.|+|+
T Consensus       305 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          305 GNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             SSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            99999655433 456788899999999999864

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.53  E-value=5.2e-14  Score=117.81  Aligned_cols=107  Identities=25%  Similarity=0.276  Sum_probs=57.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.++. +|..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|+
T Consensus        76 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  154 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (290)
T ss_dssp             CTTCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence            3445555555555543 444455555566666666666544445555556666666666666544444455555666666


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANS  156 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~  156 (241)
                      +++|++++..+.. ..+..+..+++++|.
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence            6666655322222 234555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=127.40  Aligned_cols=152  Identities=24%  Similarity=0.311  Sum_probs=110.5

Q ss_pred             CCCccccccccCCCCcccccc---cc--eeEEEEEeeccccc--c---cCccCcCccEEEccCCCCCccchh-hhcCCCC
Q 026255            7 SELRYLQDVLFPYGQVSSNVL---GT--YDYSMTMNSKGRMM--T---YNKIPDILTGIILSNNRFDEAIPA-SISNLKG   75 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~~~~--~---~~~~~~~L~~L~L~~n~i~~~~p~-~~~~l~~   75 (241)
                      ..+++|+.++++.|+++....   ..  ....+.++...+..  .   ...-+++|++|++++|.+.+.+|. .+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            577788888888888876222   11  12233333333321  1   112367888888888888774444 4777888


Q ss_pred             CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC--CCccCccCccccc
Q 026255           76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFD  153 (241)
Q Consensus        76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~  153 (241)
                      |+.|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.  ...+..+..++++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  476 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLH  476 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECc
Confidence            88888888888877776654  78999999999998 78887889999999999999998 4554  3456788889999


Q ss_pred             CCCCCCCCC
Q 026255          154 ANSGLCGRP  162 (241)
Q Consensus       154 ~n~~lc~~~  162 (241)
                      +|++.|.|+
T Consensus       477 ~N~~~c~c~  485 (520)
T 2z7x_B          477 TNPWDCSCP  485 (520)
T ss_dssp             SSCBCCCHH
T ss_pred             CCCCcccCC
Confidence            999999764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.53  E-value=7.4e-14  Score=128.90  Aligned_cols=106  Identities=16%  Similarity=0.225  Sum_probs=75.3

Q ss_pred             CccEEEccCCCCCccchhhhc--CCCCCceEecccCcCCCCCccccCCCCccceeec------cCCcCCCCCchhHhhcc
Q 026255           51 ILTGIILSNNRFDEAIPASIS--NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDL------SNNKFSGRIPQQLVELT  122 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~  122 (241)
                      +|++|+|++|.++. +|..+.  .+++|+.|++++|.+++ +|..+..+++|+.|++      ++|++.+.+|..+..++
T Consensus       489 ~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          489 LLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             GCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CccEEECcCCcCCc-cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence            67777777777764 556665  77777777777777775 6777777777777777      45666777777777777


Q ss_pred             ccceEeccCCcccCCCCCCCccCccCcccccCCCCCCC
Q 026255          123 FLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCG  160 (241)
Q Consensus       123 ~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~  160 (241)
                      +|+.|++++|.+ +.+|.... +.+..+++++|+..|-
T Consensus       567 ~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          567 SLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNISI  602 (636)
T ss_dssp             SCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCEE
T ss_pred             CCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCccc
Confidence            777777777777 46665533 6677777777776653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.53  E-value=3.4e-14  Score=129.02  Aligned_cols=152  Identities=23%  Similarity=0.315  Sum_probs=112.3

Q ss_pred             CCCccccccccCCCCcccccc---cc--eeEEEEEeeccccc-----ccCccCcCccEEEccCCCCCc-cchhhhcCCCC
Q 026255            7 SELRYLQDVLFPYGQVSSNVL---GT--YDYSMTMNSKGRMM-----TYNKIPDILTGIILSNNRFDE-AIPASISNLKG   75 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~n~i~~-~~p~~~~~l~~   75 (241)
                      .+++.|+.++++.|+++....   ..  ....+.++...+..     ....-+++|++|++++|.+.+ ..+..+..+++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~  429 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES  429 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence            677888888888888876222   11  22233333333321     012336788889999998887 34445778888


Q ss_pred             CceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC--CCccCccCccccc
Q 026255           76 LQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFD  153 (241)
Q Consensus        76 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~  153 (241)
                      |+.|++++|.+++..|..+.  ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.  ...+..+..++++
T Consensus       430 L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECC
T ss_pred             CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEec
Confidence            99999999988877776554  68999999999998 78887779999999999999999 4554  3567788899999


Q ss_pred             CCCCCCCCC
Q 026255          154 ANSGLCGRP  162 (241)
Q Consensus       154 ~n~~lc~~~  162 (241)
                      +|++.|+|+
T Consensus       506 ~N~~~c~c~  514 (562)
T 3a79_B          506 DNPWDCTCP  514 (562)
T ss_dssp             SCCBCCCHH
T ss_pred             CCCcCCCcc
Confidence            999999875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.52  E-value=3.4e-14  Score=130.17  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=94.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|+|++|.+.+..|..|..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~  330 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY  330 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence            678889999999998888888999999999999999998 46777788999999999999998 7888889999999999


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLCGR  161 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~  161 (241)
                      +++|.+++. | ...+..+..+++++|++.|.+
T Consensus       331 L~~N~l~~~-~-~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          331 LDHNSIVTL-K-LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCSSCCCCC-C-CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCCCCc-C-hhhcCCCCEEEeeCCCCCChh
Confidence            999999855 3 345678888999999988854

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=4.8e-14  Score=109.19  Aligned_cols=92  Identities=26%  Similarity=0.274  Sum_probs=82.3

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEE
Confidence            36789999999999998777778999999999999999997777778999999999999999996655567889999999


Q ss_pred             eccCCcccCCCC
Q 026255          128 NVSDNYLTGPIP  139 (241)
Q Consensus       128 ~l~~N~l~g~~p  139 (241)
                      ++++|++.+..|
T Consensus       130 ~l~~N~~~~~~~  141 (177)
T 2o6r_A          130 WLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCBCCCHH
T ss_pred             EecCCCeeccCc
Confidence            999999997665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.51  E-value=3.1e-14  Score=125.60  Aligned_cols=109  Identities=20%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      ++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            57888999999998888888999999999999999999888889999999999999999999777888999999999999


Q ss_pred             cCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255          130 SDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       130 ~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      ++|.+++..|.. ..+..+..+++++|...
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLK  384 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcccccChhhccccccccEEECCCCccc
Confidence            999998776654 56778888899888653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=7.6e-14  Score=109.99  Aligned_cols=88  Identities=31%  Similarity=0.274  Sum_probs=81.6

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|+|++|.|++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|+
T Consensus        53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A           53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence            67899999999999998888999999999999999999988888899999999999999999965556788999999999


Q ss_pred             ccCCcccC
Q 026255          129 VSDNYLTG  136 (241)
Q Consensus       129 l~~N~l~g  136 (241)
                      +++|++..
T Consensus       133 L~~N~~~C  140 (193)
T 2wfh_A          133 IGANPLYC  140 (193)
T ss_dssp             CCSSCEEC
T ss_pred             eCCCCeec
Confidence            99999975

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=4e-14  Score=108.65  Aligned_cols=105  Identities=22%  Similarity=0.187  Sum_probs=66.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc--hhHhhccccce
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--QQLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~  126 (241)
                      +++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|++++|++++ +|  ..+..+++|++
T Consensus        48 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCE
T ss_pred             CCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCCE
Confidence            45677777777777654  556667777777777777765566666666777777777777763 33  45666677777


Q ss_pred             EeccCCcccCCCC----CCCccCccCcccccCCC
Q 026255          127 FNVSDNYLTGPIP----QGKQFATFDNTSFDANS  156 (241)
Q Consensus       127 L~l~~N~l~g~~p----~~~~~~~l~~~~~~~n~  156 (241)
                      |++++|.+++..+    ....++.+..+++.+|.
T Consensus       125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A          125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            7777777764433    12345555555655554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.50  E-value=4e-14  Score=118.80  Aligned_cols=152  Identities=18%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             CCccccccccCCCCcccccc--cc--eeEEEEEeeccc---cc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            8 ELRYLQDVLFPYGQVSSNVL--GT--YDYSMTMNSKGR---MM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~~--~~--~~~~~~~~~~~~---~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      .+++|+.++++.|.++....  ..  ....+.++...+   .. ....-+++|++|++++|.+.+..+..+..+++|+.|
T Consensus        76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            56788899999998874221  00  111222222111   11 122336789999999999988888888899999999


Q ss_pred             ecccCcCCC-CCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255           80 NLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSG  157 (241)
Q Consensus        80 ~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~  157 (241)
                      ++++|.+++ ..|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+. ...+..+..+++++|..
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            999999886 5788889999999999999999977788888899999999999999865442 24567788888888865


Q ss_pred             CC
Q 026255          158 LC  159 (241)
Q Consensus       158 lc  159 (241)
                      ..
T Consensus       236 ~~  237 (306)
T 2z66_A          236 MT  237 (306)
T ss_dssp             CB
T ss_pred             cc
Confidence            43

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=5.1e-14  Score=120.27  Aligned_cols=85  Identities=21%  Similarity=0.230  Sum_probs=48.4

Q ss_pred             cCccEEEccC-CCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           50 DILTGIILSN-NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        50 ~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ++|++|+|++ |.|.+..+..|..+++|+.|+|++|.|++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            3466666664 666555555566666666666666666655555556666666666666666533333333333 66666


Q ss_pred             ccCCccc
Q 026255          129 VSDNYLT  135 (241)
Q Consensus       129 l~~N~l~  135 (241)
                      +.+|.+.
T Consensus       110 l~~N~~~  116 (347)
T 2ifg_A          110 LSGNPLH  116 (347)
T ss_dssp             CCSSCCC
T ss_pred             eeCCCcc
Confidence            6666555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.49  E-value=4.1e-14  Score=127.70  Aligned_cols=151  Identities=19%  Similarity=0.247  Sum_probs=96.2

Q ss_pred             CCccccccccCCCCccccc------ccc--eeEEEEEeeccccc-----ccCccCcCccEEEccCCCCCccchhhhcCCC
Q 026255            8 ELRYLQDVLFPYGQVSSNV------LGT--YDYSMTMNSKGRMM-----TYNKIPDILTGIILSNNRFDEAIPASISNLK   74 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~------~~~--~~~~~~~~~~~~~~-----~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~   74 (241)
                      ++++|+.++++.|+++...      ...  ....+.++...+..     ....-+++|++|++++|++++ +|..+..++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccc
Confidence            4666777777777765421      111  12223332222211     112335677777777777764 566666677


Q ss_pred             CCceEecccCcCCCCCcccc------------------CCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC
Q 026255           75 GLQVLNLHNNNLQGHIPSCL------------------GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG  136 (241)
Q Consensus        75 ~L~~L~Ls~N~l~~~~p~~~------------------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g  136 (241)
                      +|++|++++|.++ .+|..+                  ..+++|++|++++|+++ .+|. ...+++|++|++++|++++
T Consensus       411 ~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          411 KMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             TCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCC
T ss_pred             cccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCC
Confidence            7777777777765 333221                  25777888888888887 6666 4567888888888888887


Q ss_pred             CCCCC-CccCccCcccccCCCCCCCCC
Q 026255          137 PIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       137 ~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      .+|.. ..+..+..+++++|++.|+++
T Consensus       488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          488 VPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             cCHHHHhcCcccCEEEecCCCccCCCc
Confidence            66653 566778888888888888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=2.9e-14  Score=110.45  Aligned_cols=130  Identities=16%  Similarity=0.131  Sum_probs=95.2

Q ss_pred             CCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCc
Q 026255            6 TSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNN   85 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~   85 (241)
                      ..++..|+.++++.|+++...                 .+....++|+.|++++|.+++.  ..+..+++|++|++++|.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~-----------------~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIE-----------------NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCC-----------------CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSC
T ss_pred             cCCcCCceEEEeeCCCCchhH-----------------HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCc
Confidence            445667777788888776211                 1223345799999999999875  568888999999999999


Q ss_pred             CCCCCccccCCCCccceeeccCCcCCCCCch--hHhhccccceEeccCCcccCCCCC-----CCccCccCcccccCCC
Q 026255           86 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ--QLVELTFLEFFNVSDNYLTGPIPQ-----GKQFATFDNTSFDANS  156 (241)
Q Consensus        86 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~l~~N~l~g~~p~-----~~~~~~l~~~~~~~n~  156 (241)
                      +++..+..+..+++|++|++++|+++ .+|.  .+..+++|+.|++++|+++ .+|.     ...++.+..+++.+|.
T Consensus        76 l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           76 ICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             ccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence            98554455588899999999999996 5665  7788889999999999987 4443     2345566666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=6.2e-14  Score=105.46  Aligned_cols=106  Identities=21%  Similarity=0.281  Sum_probs=67.0

Q ss_pred             CcCccEEEccCCCCC-ccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..++.+++|++|++++|++++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            456677777777765 45666666667777777777776643  556666777777777777765566666666777777


Q ss_pred             eccCCcccCCC--CCCCccCccCcccccCCC
Q 026255          128 NVSDNYLTGPI--PQGKQFATFDNTSFDANS  156 (241)
Q Consensus       128 ~l~~N~l~g~~--p~~~~~~~l~~~~~~~n~  156 (241)
                      ++++|.+++..  +....++.+..+++.+|+
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc
Confidence            77777666421  222444556666666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.48  E-value=8.5e-14  Score=106.82  Aligned_cols=110  Identities=23%  Similarity=0.269  Sum_probs=95.2

Q ss_pred             ccCcCccEEEccCCCCC-ccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255           47 KIPDILTGIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE  125 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  125 (241)
                      ..+++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            44688999999999997 56888889999999999999999955  7789999999999999999977888888899999


Q ss_pred             eEeccCCcccCCC--CCCCccCccCcccccCCCCC
Q 026255          126 FFNVSDNYLTGPI--PQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus       126 ~L~l~~N~l~g~~--p~~~~~~~l~~~~~~~n~~l  158 (241)
                      +|++++|.+++..  +....+..+..+++.+|+..
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence            9999999998643  33456778888999998643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.47  E-value=1.5e-14  Score=133.50  Aligned_cols=150  Identities=19%  Similarity=0.240  Sum_probs=100.3

Q ss_pred             CCCCccccccccCCCCcccc------------------cc--c--c--eeEEEEEeecccccccC---ccCcCccEEEcc
Q 026255            6 TSELRYLQDVLFPYGQVSSN------------------VL--G--T--YDYSMTMNSKGRMMTYN---KIPDILTGIILS   58 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~------------------~~--~--~--~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~   58 (241)
                      +.++++|+.++++.|.++..                  ..  .  .  ....+.++...+....+   .-+++|++|+++
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            56788888888988888762                  11  1  1  12233333333222222   225677777777


Q ss_pred             CCC-CCc-cchhhhcCC------CCCceEecccCcCCCCCcc--ccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           59 NNR-FDE-AIPASISNL------KGLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        59 ~n~-i~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +|. +++ .+|..++.+      ++|+.|++++|.++ .+|.  .++.+++|+.|++++|+++|.+| .+..+++|+.|+
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~  359 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN  359 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence            777 776 677777665      77777777777777 7777  77777788888888888777777 677777788888


Q ss_pred             ccCCcccCCCCCC-CccCc-cCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFAT-FDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~-l~~~~~~~n~~l  158 (241)
                      +++|.++ .+|.. ..+.. +..+++++|...
T Consensus       360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~  390 (636)
T 4eco_A          360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK  390 (636)
T ss_dssp             CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred             CCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence            8888777 55543 44556 777788777644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=2.3e-13  Score=120.10  Aligned_cols=104  Identities=21%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccC-cCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ++|++|+|++|.+.+..+..|..+++|+.|++++| .+....+..|..+++|++|++++|+++ .+|. +..+++|+.|+
T Consensus       136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~  213 (440)
T 3zyj_A          136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELD  213 (440)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEE
T ss_pred             ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEE
Confidence            34444444444444433334444444444444442 222122223444555555555555554 3332 44445555555


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDAN  155 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n  155 (241)
                      +++|.+++..|.. ..+..+..+++.+|
T Consensus       214 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n  241 (440)
T 3zyj_A          214 LSGNHLSAIRPGSFQGLMHLQKLWMIQS  241 (440)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             CCCCccCccChhhhccCccCCEEECCCC
Confidence            5555555433322 23344444444444

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.46  E-value=1.6e-13  Score=121.94  Aligned_cols=152  Identities=15%  Similarity=0.107  Sum_probs=105.1

Q ss_pred             CCCCCccccccccCCCCcccccccc-----eeEEEEEeeccccccc---CccCcCccEEEccCCCCCccchhhhcCCCCC
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEAIPASISNLKGL   76 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L   76 (241)
                      .+.+++.|+.++++.|.++......     ....++++...+....   ..-+++|++|+|++|.+.+..+..|..+++|
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            4567777788888888776542211     2233333333332222   2336788888888888888778888888888


Q ss_pred             ceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCC
Q 026255           77 QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDAN  155 (241)
Q Consensus        77 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n  155 (241)
                      +.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+.+..+.. ..+..+..+++.+|
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            88888888888777888888888889999888888666667888888888888888887654422 33444555555554


Q ss_pred             C
Q 026255          156 S  156 (241)
Q Consensus       156 ~  156 (241)
                      +
T Consensus       211 ~  211 (477)
T 2id5_A          211 P  211 (477)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=9.8e-14  Score=104.36  Aligned_cols=114  Identities=18%  Similarity=0.172  Sum_probs=91.9

Q ss_pred             CccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCC
Q 026255            9 LRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG   88 (241)
Q Consensus         9 l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~   88 (241)
                      .+.|+.++++.|.++...+              +..+ .-+++|++|++++|.+++.  ..+..+++|++|++++|.+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~--------------~~~~-~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~   78 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKL--------------EGLT-DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG   78 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBC--------------CSCC-TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCS
T ss_pred             CccCeEEEccCCcCChhHH--------------HHHH-hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccc
Confidence            4667777888877762111              1111 2367899999999999886  778999999999999999997


Q ss_pred             CCccccCCCCccceeeccCCcCCCC-CchhHhhccccceEeccCCcccCCCC
Q 026255           89 HIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLEFFNVSDNYLTGPIP  139 (241)
Q Consensus        89 ~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~g~~p  139 (241)
                      .+|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+++..+
T Consensus        79 ~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A           79 GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             CTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred             hHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence            7888888899999999999999853 34778999999999999999986544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.46  E-value=1.3e-13  Score=116.28  Aligned_cols=149  Identities=17%  Similarity=0.102  Sum_probs=95.1

Q ss_pred             CCCccccccccCCCCcccccc--c-------ceeEEEEEeeccccccc---CccCcCccEEEccCCCCCcc--chhhh--
Q 026255            7 SELRYLQDVLFPYGQVSSNVL--G-------TYDYSMTMNSKGRMMTY---NKIPDILTGIILSNNRFDEA--IPASI--   70 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~--~-------~~~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n~i~~~--~p~~~--   70 (241)
                      .+++.|+.++++.|+++....  .       .....+.++...+....   ..-+++|++|++++|.+.+.  .+..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            677888888888888875410  0       22334444444333222   22367788888888887664  23344  


Q ss_pred             cCCCCCceEecccCcCCC--CCc-cccCCCCccceeeccCCcCCCCCc-hhHhhccccceEeccCCcccCCCCCCCccCc
Q 026255           71 SNLKGLQVLNLHNNNLQG--HIP-SCLGNLTNLESLDLSNNKFSGRIP-QQLVELTFLEFFNVSDNYLTGPIPQGKQFAT  146 (241)
Q Consensus        71 ~~l~~L~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~  146 (241)
                      ..+++|++|++++|.+++  .++ ..+..+++|+.|++++|++++..| ..+..+++|++|++++|.++ .+|.... ..
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~  275 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AK  275 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CC
Confidence            677888888888888772  111 334566788888888888876554 34455677888888888877 6665443 66


Q ss_pred             cCcccccCCCC
Q 026255          147 FDNTSFDANSG  157 (241)
Q Consensus       147 l~~~~~~~n~~  157 (241)
                      +..+++++|..
T Consensus       276 L~~L~Ls~N~l  286 (312)
T 1wwl_A          276 LSVLDLSYNRL  286 (312)
T ss_dssp             EEEEECCSSCC
T ss_pred             ceEEECCCCCC
Confidence            77777777754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.46  E-value=3e-13  Score=119.72  Aligned_cols=106  Identities=18%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCC-cCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNN-KFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|+.|++++| .+....+..|..+++|++|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            345555555555555544444555555555555555555333334444444444444442 2221111234444444444


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n  155 (241)
                      ++++|.++ .+|....+..+..+++++|
T Consensus       202 ~L~~n~l~-~~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          202 NLGMCNIK-DMPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             ECTTSCCS-SCCCCTTCTTCCEEECTTS
T ss_pred             ECCCCccc-ccccccccccccEEECcCC
Confidence            44444444 2233333333444444433

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.45  E-value=9.9e-13  Score=111.64  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=78.3

Q ss_pred             CCCCccccccccCCCCccccccc-----ceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255            6 TSELRYLQDVLFPYGQVSSNVLG-----TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN   80 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~   80 (241)
                      +.+++.|+.++++.|+++.....     .....++++...+......+.++|++|++++|.+.+..+..|..+++|+.|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence            45556666666666666543111     1122333333333322223334555555555555554444455555555555


Q ss_pred             cccCcC----------------------------------------------CCCCccccCCCCccceeeccCCcCCCCC
Q 026255           81 LHNNNL----------------------------------------------QGHIPSCLGNLTNLESLDLSNNKFSGRI  114 (241)
Q Consensus        81 Ls~N~l----------------------------------------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  114 (241)
                      +++|.+                                              ++..+..+..+++|+.|++++|++++..
T Consensus       154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~  233 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE  233 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred             CCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence            554444                                              3333344555666666666666666555


Q ss_pred             chhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCC
Q 026255          115 PQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSG  157 (241)
Q Consensus       115 p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~  157 (241)
                      +..+..+++|+.|++++|.++ .+|.. ..+..+..+++++|..
T Consensus       234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            555666666666666666666 44432 3445566666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.45  E-value=2.5e-13  Score=112.32  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            67899999999999887777888999999999999999977778889999999999999999866665788889999999


Q ss_pred             ccCCcccCC-CCCC-CccCccCcccccCCCC
Q 026255          129 VSDNYLTGP-IPQG-KQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~-~p~~-~~~~~l~~~~~~~n~~  157 (241)
                      +++|.+++. +|.. ..+..+..+++++|..
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            999998863 4543 4567788888888854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.45  E-value=9.4e-14  Score=109.53  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=93.8

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+++|++|++++|.+..  ++.+..+++|++|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++
T Consensus        63 ~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~  140 (197)
T 4ezg_A           63 EYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS  140 (197)
T ss_dssp             GGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred             hcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence            347899999999998764  347889999999999999999878888999999999999999999878889999999999


Q ss_pred             EeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          127 FNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       127 L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      |++++|.+.+.+|....++.+..+++++|..
T Consensus       141 L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          141 IDLSYNGAITDIMPLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             EECCSCTBCCCCGGGGGCSSCCEEECTTBCC
T ss_pred             EEccCCCCccccHhhcCCCCCCEEECCCCCC
Confidence            9999998434666666677888888888753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.45  E-value=2.3e-13  Score=124.25  Aligned_cols=107  Identities=19%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|.+.+..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|++++..|..+..+++|++|+
T Consensus        56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~  135 (606)
T 3t6q_A           56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY  135 (606)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred             CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence            44566666666666555555555666666666666666555555555566666666666665544344455555666666


Q ss_pred             ccCCcccC-CCCCCCccCccCcccccCC
Q 026255          129 VSDNYLTG-PIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus       129 l~~N~l~g-~~p~~~~~~~l~~~~~~~n  155 (241)
                      +++|.+++ .+|....+..+..+++++|
T Consensus       136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          136 LGSNHISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             CCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             CCCCcccccCcccccCCcccCEEEcccC
Confidence            66665554 2233333444555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=1.2e-13  Score=116.49  Aligned_cols=151  Identities=13%  Similarity=0.077  Sum_probs=105.6

Q ss_pred             CCccccccccCCCCccccccc-------ceeEEEEEeecccccc---cCcc----CcCccEEEccCCCCCccchhhhcCC
Q 026255            8 ELRYLQDVLFPYGQVSSNVLG-------TYDYSMTMNSKGRMMT---YNKI----PDILTGIILSNNRFDEAIPASISNL   73 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~---~~~~----~~~L~~L~L~~n~i~~~~p~~~~~l   73 (241)
                      +++.|+.++++.|+++.....       .....++++...+...   +..+    +++|++|++++|.+.+..|..|..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            567788888888888742211       1233344444443322   1121    3789999999999988887889999


Q ss_pred             CCCceEecccCcCCCC--Ccccc--CCCCccceeeccCCcCCCC--Cc-hhHhhccccceEeccCCcccCCCCC--CCcc
Q 026255           74 KGLQVLNLHNNNLQGH--IPSCL--GNLTNLESLDLSNNKFSGR--IP-QQLVELTFLEFFNVSDNYLTGPIPQ--GKQF  144 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p-~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~  144 (241)
                      ++|++|++++|.+.+.  .|..+  +.+++|++|++++|++++.  ++ ..+..+++|++|++++|.+++..|.  ...+
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  252 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP  252 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence            9999999999998765  33444  7889999999999998831  12 2334678999999999999886642  3446


Q ss_pred             CccCcccccCCCCC
Q 026255          145 ATFDNTSFDANSGL  158 (241)
Q Consensus       145 ~~l~~~~~~~n~~l  158 (241)
                      ..+..+++++|...
T Consensus       253 ~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK  266 (312)
T ss_dssp             TTCCEEECTTSCCS
T ss_pred             CCCCEEECCCCccC
Confidence            78888888888654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.44  E-value=2.6e-13  Score=123.95  Aligned_cols=109  Identities=21%  Similarity=0.232  Sum_probs=75.5

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|++++..+..+..+++|++|+
T Consensus        55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  134 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN  134 (606)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred             CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence            56677777777777776666777777777777777777766677777777777777777777755556677777777777


Q ss_pred             ccCCcccC-CCCCC-CccCccCcccccCCCC
Q 026255          129 VSDNYLTG-PIPQG-KQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g-~~p~~-~~~~~l~~~~~~~n~~  157 (241)
                      +++|.+++ .+|.. ..+..+..+++++|..
T Consensus       135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             CCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             CCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            77777764 34542 4456666677776643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.44  E-value=2.6e-13  Score=124.23  Aligned_cols=90  Identities=23%  Similarity=0.240  Sum_probs=68.7

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      .+++|+.|+|++|.+++.+|..|+.+++|++|+|++|.+++..+..|+.+++|++|++++|.+++..|..+..+++|++|
T Consensus        97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  176 (597)
T 3oja_B           97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL  176 (597)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence            36678888888888877777777788888888888888875555556778888888888888877777777778888888


Q ss_pred             eccCCcccCC
Q 026255          128 NVSDNYLTGP  137 (241)
Q Consensus       128 ~l~~N~l~g~  137 (241)
                      ++++|.+++.
T Consensus       177 ~L~~N~l~~~  186 (597)
T 3oja_B          177 QLSSNRLTHV  186 (597)
T ss_dssp             ECTTSCCSBC
T ss_pred             ECcCCCCCCc
Confidence            8888877753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.43  E-value=1.3e-12  Score=110.66  Aligned_cols=151  Identities=16%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             CCCCccccccccCCCCccccccc---c--eeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255            6 TSELRYLQDVLFPYGQVSSNVLG---T--YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN   80 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~   80 (241)
                      +.+++.|+.++++.|+++.....   .  ....++++...+......+.++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence            45566666666666666543211   1  222333333333322223334555555555555554444444444444444


Q ss_pred             cccCcCCC--CCccccCCC---------------------CccceeeccCCcCCCCCchhHhhccccceEeccCCcccCC
Q 026255           81 LHNNNLQG--HIPSCLGNL---------------------TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGP  137 (241)
Q Consensus        81 Ls~N~l~~--~~p~~~~~l---------------------~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~  137 (241)
                      +++|.++.  ..+..+..+                     ++|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  231 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV  231 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee
Confidence            44444421  222222222                     3344444444444444444555555555555555555544


Q ss_pred             CCCC-CccCccCcccccCCC
Q 026255          138 IPQG-KQFATFDNTSFDANS  156 (241)
Q Consensus       138 ~p~~-~~~~~l~~~~~~~n~  156 (241)
                      .+.. ..+..+..+++++|.
T Consensus       232 ~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          232 DNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             CTTTGGGSTTCCEEECCSSC
T ss_pred             ChhhccCCCCCCEEECCCCc
Confidence            3321 233445555555553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.43  E-value=6e-13  Score=126.56  Aligned_cols=106  Identities=25%  Similarity=0.344  Sum_probs=52.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcC-C-------CCCceEecccCcCCCCCccccC--CCCccceeeccCCcCCCCCchhH
Q 026255           49 PDILTGIILSNNRFDEAIPASISN-L-------KGLQVLNLHNNNLQGHIPSCLG--NLTNLESLDLSNNKFSGRIPQQL  118 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~-l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~l  118 (241)
                      +++|+.|+|++|.++. +|..+.. .       ++|+.|+|++|.++ .+|..+.  .+++|+.|+|++|++++ +|..+
T Consensus       696 l~~L~~L~Ls~N~L~~-ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          696 GSPISTIILSNNLMTS-IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             TCCCSEEECCSCCCSC-CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred             CCCCCEEECCCCcCCc-cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence            3455555555555553 2222211 1       15555555555555 4555444  55555555555555553 45555


Q ss_pred             hhccccceEeccC------CcccCCCCCC-CccCccCcccccCCCC
Q 026255          119 VELTFLEFFNVSD------NYLTGPIPQG-KQFATFDNTSFDANSG  157 (241)
Q Consensus       119 ~~l~~L~~L~l~~------N~l~g~~p~~-~~~~~l~~~~~~~n~~  157 (241)
                      ..+++|+.|++++      |.+.+.+|.. ..+..+..+++++|..
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            5555555555543      4444444433 2344455555555543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.43  E-value=2.4e-13  Score=116.40  Aligned_cols=107  Identities=23%  Similarity=0.260  Sum_probs=67.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCc-cccCCCCccceeeccCC-cCCCCCchhHhhccccce
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLESLDLSNN-KFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~  126 (241)
                      +++|++|++++|.+++..+..+..+++|++|++++|.++...+ ..+..+++|++|++++| .++...+..+..+++|++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~  178 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE  178 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCE
Confidence            4667777777777776555557777777777777777773322 35677777777777777 355444556677777777


Q ss_pred             EeccCCcccCCCCCC-CccCccCcccccCC
Q 026255          127 FNVSDNYLTGPIPQG-KQFATFDNTSFDAN  155 (241)
Q Consensus       127 L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n  155 (241)
                      |++++|.+++..|.. ..+..+..+++.+|
T Consensus       179 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          179 LEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             EEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             EECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            777777776655543 22333333444333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=114.41  Aligned_cols=145  Identities=17%  Similarity=0.182  Sum_probs=94.8

Q ss_pred             CCccccccccCCCCcccccccc-----eeEEEEEeeccccc-------ccCccCcCccEEEccCCCCCccchh----hhc
Q 026255            8 ELRYLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKGRMM-------TYNKIPDILTGIILSNNRFDEAIPA----SIS   71 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~-------~~~~~~~~L~~L~L~~n~i~~~~p~----~~~   71 (241)
                      .++.|+.++++.|.++......     ....++++...+..       ....-+++|++|+|++|+++. ++.    .+.
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            4777888888888886533211     22233333333211       111235678888888888864 333    246


Q ss_pred             CCCCCceEecccCcCCCCCccccCCC---CccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccC
Q 026255           72 NLKGLQVLNLHNNNLQGHIPSCLGNL---TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFD  148 (241)
Q Consensus        72 ~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~  148 (241)
                      .+++|++|+|++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|+.|++++|++++. |....++.+.
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~  297 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVD  297 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCcc
Confidence            77888888888888887667666665   58888888888887 6676553  6788888888888753 4345567777


Q ss_pred             cccccCCCC
Q 026255          149 NTSFDANSG  157 (241)
Q Consensus       149 ~~~~~~n~~  157 (241)
                      .+++++|+.
T Consensus       298 ~L~L~~N~l  306 (310)
T 4glp_A          298 NLTLDGNPF  306 (310)
T ss_dssp             CEECSSTTT
T ss_pred             EEECcCCCC
Confidence            778888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.43  E-value=4.8e-13  Score=111.94  Aligned_cols=102  Identities=25%  Similarity=0.349  Sum_probs=61.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+++.  +.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|+
T Consensus       111 l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~  184 (291)
T 1h6t_A          111 LKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLY  184 (291)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEE
Confidence            45666666666666553  3455666666666666666633  345666666666666666664332  56666666666


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      +++|.+++ +|....+..+..+++.+|+.
T Consensus       185 L~~N~i~~-l~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          185 LSKNHISD-LRALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             CCSSCCCB-CGGGTTCTTCSEEEEEEEEE
T ss_pred             CCCCcCCC-ChhhccCCCCCEEECcCCcc
Confidence            66666663 34444555666666666653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.43  E-value=3.5e-13  Score=116.85  Aligned_cols=88  Identities=24%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+.+..|..|..+++|++|++++|.++...+..|+.+++|++|++++|++++..|..+..+++|++|+
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence            45566666666666555555555666666666666666533223345566666666666666554455555556666666


Q ss_pred             ccCCcccC
Q 026255          129 VSDNYLTG  136 (241)
Q Consensus       129 l~~N~l~g  136 (241)
                      +++|.+++
T Consensus       172 l~~n~l~~  179 (390)
T 3o6n_A          172 LSSNRLTH  179 (390)
T ss_dssp             CCSSCCSB
T ss_pred             CCCCcCCc
Confidence            66666553

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=5.1e-13  Score=114.38  Aligned_cols=110  Identities=22%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             cCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255           45 YNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL  124 (241)
Q Consensus        45 ~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  124 (241)
                      +..++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+.+++|++|++++|++++..+..+..+++|
T Consensus        47 P~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           47 PSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             CTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             cccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            33445567777777777766555566677777777777777766556666677777777777777764444446666777


Q ss_pred             ceEeccCCcccCCCCC---CCccCccCcccccCC
Q 026255          125 EFFNVSDNYLTGPIPQ---GKQFATFDNTSFDAN  155 (241)
Q Consensus       125 ~~L~l~~N~l~g~~p~---~~~~~~l~~~~~~~n  155 (241)
                      ++|++++|.+++ +|.   ...+..+..+++.+|
T Consensus       127 ~~L~L~~n~l~~-l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A          127 TFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             SEEECTTCCCSS-SCSSCSCTTCTTCCEEEEEES
T ss_pred             CEEECCCCCCcc-cCchhhhccCCCCcEEECCCC
Confidence            777777776663 333   234555556666555

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.42  E-value=4.3e-13  Score=120.99  Aligned_cols=108  Identities=21%  Similarity=0.276  Sum_probs=55.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L  127 (241)
                      +++|++|++++|.+++..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|++++ ..|..+..+++|++|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            4455555555555555544555555555555555555554444445555555555555555553 233445555555555


Q ss_pred             eccCCcccCCCCC--CCccCccCcccccCCC
Q 026255          128 NVSDNYLTGPIPQ--GKQFATFDNTSFDANS  156 (241)
Q Consensus       128 ~l~~N~l~g~~p~--~~~~~~l~~~~~~~n~  156 (241)
                      ++++|.+.+.+|.  ...+..+..+++.+|.
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            5555553333332  1334444455555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.42  E-value=2.4e-13  Score=110.17  Aligned_cols=143  Identities=13%  Similarity=0.077  Sum_probs=91.4

Q ss_pred             cccccccCCCCcccccccc-----eeEEEEEeecc-ccccc---CccCcCccEEEccC-CCCCccchhhhcCCCCCceEe
Q 026255           11 YLQDVLFPYGQVSSNVLGT-----YDYSMTMNSKG-RMMTY---NKIPDILTGIILSN-NRFDEAIPASISNLKGLQVLN   80 (241)
Q Consensus        11 ~L~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~-~~~~~---~~~~~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~   80 (241)
                      .|+.++++.|+++......     ....++++... +....   ..-+++|++|++++ |.+++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            4556666666665433211     22333333332 21111   12356788888887 888776667777888888888


Q ss_pred             cccCcCCCCCccccCCCCccc---eeeccCC-cCCCCCchhHhhccccc-eEeccCCcccCCCCCC-CccCccCcccccC
Q 026255           81 LHNNNLQGHIPSCLGNLTNLE---SLDLSNN-KFSGRIPQQLVELTFLE-FFNVSDNYLTGPIPQG-KQFATFDNTSFDA  154 (241)
Q Consensus        81 Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~l~~l~~L~-~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~  154 (241)
                      +++|.+++ +|. +..+++|+   .|++++| ++++..+..|..+++|+ .|++++|.++ .+|.. .....+..+++.+
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            88888874 665 77777777   8888888 77755555677788888 8888888877 44432 2235666777777


Q ss_pred             CC
Q 026255          155 NS  156 (241)
Q Consensus       155 n~  156 (241)
                      |+
T Consensus       189 n~  190 (239)
T 2xwt_C          189 NK  190 (239)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.41  E-value=1.8e-13  Score=122.48  Aligned_cols=107  Identities=21%  Similarity=0.102  Sum_probs=75.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccC-CCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLG-NLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|++++|.+++. |. +..+++|+.|
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L  196 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence            56677777777777776666777777777777777777766666665 577777777777777744 32 2347777788


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      ++++|.+++..|....+..+..+++++|..
T Consensus       197 ~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKL  226 (487)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCC
T ss_pred             ECCCCCCCCCCHhHcCCCCccEEEecCCcC
Confidence            888887776656555566777777777754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.41  E-value=9.6e-13  Score=119.92  Aligned_cols=88  Identities=31%  Similarity=0.412  Sum_probs=46.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC-chhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI-PQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L  127 (241)
                      +++|+.|+|++|.|+ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|
T Consensus       462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred             cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence            345555555555554 244455555555555555555553 44 4555555555555555555443 5555555555555


Q ss_pred             eccCCcccCCCC
Q 026255          128 NVSDNYLTGPIP  139 (241)
Q Consensus       128 ~l~~N~l~g~~p  139 (241)
                      ++++|++++.+|
T Consensus       539 ~L~~N~l~~~~~  550 (567)
T 1dce_A          539 NLQGNSLCQEEG  550 (567)
T ss_dssp             ECTTSGGGGSSS
T ss_pred             EecCCcCCCCcc
Confidence            555555554433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.41  E-value=1e-12  Score=111.89  Aligned_cols=147  Identities=19%  Similarity=0.208  Sum_probs=83.4

Q ss_pred             CCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      +.+++.|+.++++.|.++.... ..  ....+.+....+.... ...+++|++|++++|.+++..+  +..+++|+.|++
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  250 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEI  250 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEEC
Confidence            4566677777777777764331 11  1112222222221111 2235667777777777766433  666777777777


Q ss_pred             ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255           82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus        82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      ++|.+++ + +.+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++..|.. ..++.+..+++++|+..
T Consensus       251 ~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          251 GTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             CCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            7777763 3 346666777777777777663 33 3566667777777777666544432 33455666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.41  E-value=1.5e-13  Score=130.59  Aligned_cols=149  Identities=19%  Similarity=0.217  Sum_probs=99.3

Q ss_pred             CCCCccccccccCCCCccc------------------cccc------ceeEEEEEeecccccccC---ccCcCccEEEcc
Q 026255            6 TSELRYLQDVLFPYGQVSS------------------NVLG------TYDYSMTMNSKGRMMTYN---KIPDILTGIILS   58 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~------------------~~~~------~~~~~~~~~~~~~~~~~~---~~~~~L~~L~L~   58 (241)
                      +.+|++|+.++++.|.++.                  ....      .....+.++...+....+   .-+++|+.|+|+
T Consensus       444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            6677888888898888886                  1111      112333443333222222   225677778888


Q ss_pred             CCC-CCc-cchhhhcCCC-------CCceEecccCcCCCCCcc--ccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           59 NNR-FDE-AIPASISNLK-------GLQVLNLHNNNLQGHIPS--CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        59 ~n~-i~~-~~p~~~~~l~-------~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +|+ +++ .+|..++.++       +|+.|++++|.++ .+|.  .++.+++|+.|++++|+++ .+| .+..+++|+.|
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDL  600 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEE
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEE
Confidence            887 776 6676665554       7888888888877 7777  7778888888888888877 777 67777788888


Q ss_pred             eccCCcccCCCCCC-CccCc-cCcccccCCCCC
Q 026255          128 NVSDNYLTGPIPQG-KQFAT-FDNTSFDANSGL  158 (241)
Q Consensus       128 ~l~~N~l~g~~p~~-~~~~~-l~~~~~~~n~~l  158 (241)
                      ++++|.++ .+|.. ..+.. +..+++++|...
T Consensus       601 ~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          601 KLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             ECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             ECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            88888877 55543 44555 777777777643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.41  E-value=1.6e-12  Score=109.61  Aligned_cols=81  Identities=22%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             cCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcc
Q 026255           71 SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNT  150 (241)
Q Consensus        71 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~  150 (241)
                      ..+++|+.|++++|.+++ ++. +..+++|+.|++++|++++ ++. +..+++|++|++++|++++.. ....+..+..+
T Consensus       148 ~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L  222 (308)
T 1h6u_A          148 AGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIV  222 (308)
T ss_dssp             GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEE
T ss_pred             cCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEE
Confidence            333444444444444432 222 3444444444444444442 221 344444444444444444322 12333444444


Q ss_pred             cccCCC
Q 026255          151 SFDANS  156 (241)
Q Consensus       151 ~~~~n~  156 (241)
                      ++++|+
T Consensus       223 ~l~~N~  228 (308)
T 1h6u_A          223 TLTNQT  228 (308)
T ss_dssp             EEEEEE
T ss_pred             EccCCe
Confidence            444444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.40  E-value=1.2e-12  Score=121.27  Aligned_cols=108  Identities=20%  Similarity=0.198  Sum_probs=60.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..+..+++|++|+
T Consensus        72 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL  151 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE
T ss_pred             ccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEE
Confidence            45566666666666554444556666666666666666544445566666666666666666655555555566666666


Q ss_pred             ccCCcccCCCCCC---CccCccCcccccCCC
Q 026255          129 VSDNYLTGPIPQG---KQFATFDNTSFDANS  156 (241)
Q Consensus       129 l~~N~l~g~~p~~---~~~~~l~~~~~~~n~  156 (241)
                      +++|.+++..+..   .....+..+++++|.
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCc
Confidence            6666665443321   122445555555553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=8.7e-13  Score=111.20  Aligned_cols=128  Identities=19%  Similarity=0.248  Sum_probs=95.1

Q ss_pred             CCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCc
Q 026255            6 TSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNN   85 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~   85 (241)
                      +.+++.|+.++++.|.++...                 . ..-+++|++|++++|.+++. +. +..+++|+.|++++|.
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~-----------------~-~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~  140 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS-----------------A-IAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQ  140 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG-----------------G-GTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred             HccCCCCCEEEccCCcCCCch-----------------h-hcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCc
Confidence            567778888888888876321                 1 12367788888888888774 33 7888888888888888


Q ss_pred             CCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCC
Q 026255           86 LQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGL  158 (241)
Q Consensus        86 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~l  158 (241)
                      +++ ++. ++.+++|+.|++++|++++ ++. +..+++|+.|++++|.+++.. ....+..+..+++++|...
T Consensus       141 l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          141 ITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSCCC
T ss_pred             cCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCCccC
Confidence            884 443 7788888888888888884 444 778888888888888887543 3556677777888887654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=1.5e-12  Score=107.46  Aligned_cols=147  Identities=21%  Similarity=0.166  Sum_probs=96.2

Q ss_pred             CCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      +++++.|+.++++.|.++.... ..  ....+.++...+.... ..-+++|++|++++|.+++ +|. +.. ++|+.|++
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L  113 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFL  113 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEEC
T ss_pred             hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEc
Confidence            3456666777777777764331 11  1222222222221111 2236678888888888876 333 223 77888888


Q ss_pred             ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCCC
Q 026255           82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCG  160 (241)
Q Consensus        82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~  160 (241)
                      ++|.+++ ++ .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|.+++. +....+..+..+++.+|+..+.
T Consensus       114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             cCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence            8888874 44 47888888999999988884 44 577888889999999988865 5556677788888888876554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.40  E-value=3.3e-13  Score=113.67  Aligned_cols=109  Identities=12%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC--C--ccccCCCCccceeeccCCcCCCCCch----hHhh
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH--I--PSCLGNLTNLESLDLSNNKFSGRIPQ----QLVE  120 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~--p~~~~~l~~L~~L~Ls~N~l~~~~p~----~l~~  120 (241)
                      +++|++|+|++|.+.+..+..+..+++|++|++++|.+.+.  +  +..++.+++|++|++++|+++ .++.    .+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            67888899999998887778888888899999999887642  2  223467888888888888887 4444    2466


Q ss_pred             ccccceEeccCCcccCCCCCC-Ccc---CccCcccccCCCCC
Q 026255          121 LTFLEFFNVSDNYLTGPIPQG-KQF---ATFDNTSFDANSGL  158 (241)
Q Consensus       121 l~~L~~L~l~~N~l~g~~p~~-~~~---~~l~~~~~~~n~~l  158 (241)
                      +++|++|++++|.+++..|.. ..+   +.+..+++++|...
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE  264 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence            788888888888888775543 222   57778888887654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=1.1e-12  Score=120.45  Aligned_cols=147  Identities=18%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             CCCCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            4 FNTSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         4 ~~~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      ..+.+|+.|+.|+++.|+++.... ..  .+..+.++...+.. ....-+++|+.|+|++|.+.+.  +.+..+++|+.|
T Consensus        59 ~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L  136 (605)
T 1m9s_A           59 QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL  136 (605)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEE
T ss_pred             hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEE
Confidence            345667777777887777765331 11  12222332222211 1123367788888888888763  347788888888


Q ss_pred             ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255           80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus        80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      +|++|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++ +|....+..+..+++.+|+.
T Consensus       137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCSEEE
T ss_pred             ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-ChHHccCCCCCEEEccCCcC
Confidence            8888888854  567888888889998888886555  7788888899999888885 45556677777888887754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.39  E-value=2.4e-13  Score=127.27  Aligned_cols=89  Identities=27%  Similarity=0.391  Sum_probs=37.8

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccc-cceEe
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF-LEFFN  128 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~  128 (241)
                      ++|++|+|++|.|+ .+|..|+.+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|++.+|..+..+.. +..++
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            34444444444444 23444444444444444444444 34444444444444444444444444443332211 11234


Q ss_pred             ccCCcccCCCCC
Q 026255          129 VSDNYLTGPIPQ  140 (241)
Q Consensus       129 l~~N~l~g~~p~  140 (241)
                      +++|.++|.+|.
T Consensus       348 l~~N~l~~~~p~  359 (727)
T 4b8c_D          348 LRDNRPEIPLPH  359 (727)
T ss_dssp             HHHCCCCCCCCC
T ss_pred             hccCcccCcCcc
Confidence            444444444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.38  E-value=9.5e-13  Score=123.25  Aligned_cols=106  Identities=28%  Similarity=0.396  Sum_probs=82.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +..|+.|+|++|.+.. +|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|+|+ .+|..|..+++|++|+
T Consensus       223 l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            5678888888888874 5666667888888888888888 78888888888888888888888 7788888888888888


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      |++|.++ .+|.. ..+..+..+++++|...
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            8888887 55543 55667777778777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.38  E-value=6.1e-13  Score=119.38  Aligned_cols=104  Identities=24%  Similarity=0.263  Sum_probs=73.2

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC-CCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L  127 (241)
                      +++|++|+|++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++++|++++ .+|..+..+++|++|
T Consensus        44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEE
Confidence            567777888888777766777777777888888888777 56655  67777888888887775 356777777788888


Q ss_pred             eccCCcccCCCCCCCccCcc--CcccccCCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATF--DNTSFDANSG  157 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l--~~~~~~~n~~  157 (241)
                      ++++|.+++.  ....+..+  ..+++.+|..
T Consensus       121 ~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          121 GLSTTHLEKS--SVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EEEESSCCGG--GGGGGTTSCEEEEEEEECTT
T ss_pred             EecCcccchh--hccccccceeeEEEeecccc
Confidence            8887777642  12233444  6666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.38  E-value=1.5e-12  Score=105.42  Aligned_cols=151  Identities=14%  Similarity=0.096  Sum_probs=110.0

Q ss_pred             CCCCCccccccccCCCC-cccccccc-----eeEEEEEee-cccccccC---ccCcCccEEEccCCCCCccchhhhcCCC
Q 026255            5 NTSELRYLQDVLFPYGQ-VSSNVLGT-----YDYSMTMNS-KGRMMTYN---KIPDILTGIILSNNRFDEAIPASISNLK   74 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~-l~~~~~~~-----~~~~~~~~~-~~~~~~~~---~~~~~L~~L~L~~n~i~~~~p~~~~~l~   74 (241)
                      .+.+++.|+.++++.|+ ++......     ....+.++. ..+.....   .-+++|++|++++|.+++ +|. +..++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            46678888888999886 76544322     233444544 34332221   236789999999999988 555 88888


Q ss_pred             CCc---eEecccC-cCCCCCccccCCCCccc-eeeccCCcCCCCCchhHhhccccceEeccCCc-ccCCCCCC-Ccc-Cc
Q 026255           75 GLQ---VLNLHNN-NLQGHIPSCLGNLTNLE-SLDLSNNKFSGRIPQQLVELTFLEFFNVSDNY-LTGPIPQG-KQF-AT  146 (241)
Q Consensus        75 ~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~-l~g~~p~~-~~~-~~  146 (241)
                      +|+   .|++++| .+++..+..|..+++|+ .|++++|+++ .+|......++|+.|++++|+ +++..+.. ..+ ..
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence            888   9999999 99876677799999999 9999999998 566543344889999999995 88544443 345 67


Q ss_pred             cCcccccCCCCC
Q 026255          147 FDNTSFDANSGL  158 (241)
Q Consensus       147 l~~~~~~~n~~l  158 (241)
                      +..+++++|...
T Consensus       207 L~~L~l~~N~l~  218 (239)
T 2xwt_C          207 PSLLDVSQTSVT  218 (239)
T ss_dssp             CSEEECTTCCCC
T ss_pred             CcEEECCCCccc
Confidence            888888888654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.38  E-value=7.5e-13  Score=125.84  Aligned_cols=111  Identities=18%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             cCcCccEEEccCCCCCccc-hhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchh--Hhhcccc
Q 026255           48 IPDILTGIILSNNRFDEAI-PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQ--LVELTFL  124 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L  124 (241)
                      -+++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|..|+.+++|++|++++|.+++.+|..  +..+++|
T Consensus        46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL  125 (844)
T ss_dssp             SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred             ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence            3778999999999655544 778899999999999999999888999999999999999999998766665  8889999


Q ss_pred             ceEeccCCcccCCCCC--CCccCccCcccccCCCCC
Q 026255          125 EFFNVSDNYLTGPIPQ--GKQFATFDNTSFDANSGL  158 (241)
Q Consensus       125 ~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~~n~~l  158 (241)
                      ++|++++|.+++..+.  ...+..+..+++++|...
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            9999999999876553  356778888888888643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.37  E-value=1.3e-12  Score=118.11  Aligned_cols=109  Identities=17%  Similarity=0.202  Sum_probs=84.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|.+++..+..|..+++|++|++++|.+++..|..|+.+++|++|++++|++++..+..+..+++|++|+
T Consensus        51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  130 (570)
T 2z63_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (570)
T ss_dssp             CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred             CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence            67788888888888887777788888888888888888877777888888888888888888854444577888888888


Q ss_pred             ccCCcccC-CCCCC-CccCccCcccccCCCC
Q 026255          129 VSDNYLTG-PIPQG-KQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g-~~p~~-~~~~~l~~~~~~~n~~  157 (241)
                      +++|.+++ .+|.. ..+..+..+++++|..
T Consensus       131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             cCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            88888876 34543 4466777788877754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.36  E-value=1e-12  Score=119.25  Aligned_cols=84  Identities=27%  Similarity=0.287  Sum_probs=40.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ++++++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+.+++|++|++++|+++ .+|..  .+++|++|+
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~  127 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD  127 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence            344555555555554444444555555555555555555444444455555555555555544 33333  444455555


Q ss_pred             ccCCccc
Q 026255          129 VSDNYLT  135 (241)
Q Consensus       129 l~~N~l~  135 (241)
                      +++|.++
T Consensus       128 Ls~N~l~  134 (562)
T 3a79_B          128 LSFNDFD  134 (562)
T ss_dssp             CCSSCCS
T ss_pred             CCCCCcc
Confidence            5555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.36  E-value=4.9e-13  Score=113.02  Aligned_cols=106  Identities=22%  Similarity=0.116  Sum_probs=49.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCcccc-CCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|++++. |. ...+++|++|
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L  196 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL  196 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred             cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence            3444555555555544444444445555555555555554333333 2345555555555555422 22 1224455555


Q ss_pred             eccCCcccCCCCCCCccCccCcccccCCC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      ++++|.+++..+....+..+..+++++|.
T Consensus       197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             ECCCCcCCcchhhhcccCcccEEECcCCc
Confidence            55555555433333334444555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=1.9e-12  Score=106.70  Aligned_cols=146  Identities=17%  Similarity=0.161  Sum_probs=105.0

Q ss_pred             CCCCccccccccCCCCccccc-ccc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255            6 TSELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      ..+++.+..+.++.+.++... ...  ....+.++...+.. .....+++|++|++++|.+++..+  +..+++|+.|++
T Consensus        15 d~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             SHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             CHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            345666666777777776433 111  12223333332221 112347899999999999988554  899999999999


Q ss_pred             ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255           82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC  159 (241)
Q Consensus        82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc  159 (241)
                      ++|.+++ +|.. .. ++|+.|++++|++++ ++ .+..+++|+.|++++|++++. +....+..+..+++++|....
T Consensus        93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB
T ss_pred             CCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc
Confidence            9999994 5543 33 899999999999994 44 588999999999999999854 555667888889999986544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.33  E-value=4.7e-12  Score=105.86  Aligned_cols=144  Identities=24%  Similarity=0.276  Sum_probs=98.1

Q ss_pred             CCCccccccccCCCCcccccc-cc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEecc
Q 026255            7 SELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLH   82 (241)
Q Consensus         7 ~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls   82 (241)
                      +.++.|+.++++.+.++.... ..  ....+.++...+.... ..-+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred             hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence            345556666666666654321 11  1222222222221111 2336788899999999876 33 38888999999999


Q ss_pred             cCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255           83 NNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus        83 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      +|.+++ + +.+..+++|+.|++++|++++.  ..+..+++|+.|++++|.+++..| ...+..+..+++++|..
T Consensus       121 ~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          121 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             TSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            999884 4 4578888999999999998854  567888999999999999886554 56677788888888854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=2.5e-12  Score=99.52  Aligned_cols=106  Identities=13%  Similarity=0.073  Sum_probs=86.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +.+|++|++++|.++. +|......++|+.|++++|.+++.  ..++.+++|++|++++|++++..+..+..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            6789999999999986 454333344999999999999954  6789999999999999999965555568999999999


Q ss_pred             ccCCcccCCCCC---CCccCccCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQ---GKQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~---~~~~~~l~~~~~~~n~~l  158 (241)
                      +++|.++ .+|.   ...++.+..+++.+|+..
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            9999996 4554   345677888899999754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.31  E-value=2.7e-12  Score=116.94  Aligned_cols=103  Identities=20%  Similarity=0.229  Sum_probs=92.6

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      .|+.|+|++|.|++ +|. ++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            58899999999988 565 999999999999999999 889999999999999999999995 77 79999999999999


Q ss_pred             CCcccCCC-CCC-CccCccCcccccCCCCC
Q 026255          131 DNYLTGPI-PQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       131 ~N~l~g~~-p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      +|.+++.. |.. ..+..+..+++++|+..
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            99999875 544 56788899999999753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.30  E-value=6.1e-12  Score=111.68  Aligned_cols=104  Identities=28%  Similarity=0.389  Sum_probs=58.8

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|++++|.+.+..+  +..+++|+.|++++|.+++..|  +..+++|+.|++++|++++.  ..+..+++|+.|+
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  359 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS  359 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence            4455555555555554322  4555566666666666554333  45556666666666666533  2455666666666


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSGLC  159 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc  159 (241)
                      +++|++++..| ...+..+..+++.+|++..
T Consensus       360 l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          360 AGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            66666665555 4445556666666665443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=5e-12  Score=107.88  Aligned_cols=108  Identities=19%  Similarity=0.173  Sum_probs=94.8

Q ss_pred             cEEEccCC-CCCccchhhhcCCCCCceEeccc-CcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           53 TGIILSNN-RFDEAIPASISNLKGLQVLNLHN-NNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        53 ~~L~L~~n-~i~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      ..++.+++ ++++ +|. +..+++|+.|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35788888 8987 677 99999999999996 99998888899999999999999999998888899999999999999


Q ss_pred             CCcccCCCCCCCccCccCcccccCCCCCCCCC
Q 026255          131 DNYLTGPIPQGKQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       131 ~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      +|+|++..+.......+..+++.+|++.|.|.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            99999766655444458889999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.28  E-value=1.4e-11  Score=104.88  Aligned_cols=145  Identities=21%  Similarity=0.270  Sum_probs=89.0

Q ss_pred             CCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      +.+++.|+.++++.+.+..... ..  ....+.++...+.. .....+++|+.|++++|.+.+..+  +..+++|+.|++
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l  228 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKI  228 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred             hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEc
Confidence            4566667777777776654321 11  12222222222211 112335677777888777766433  677777888888


Q ss_pred             ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255           82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus        82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      ++|.+++ .+. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ ++....+..+..+++.+|..
T Consensus       229 ~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          229 GNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQL  299 (347)
T ss_dssp             CSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC
T ss_pred             cCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcC
Confidence            8887773 333 6777788888888887774 3 346677778888888887774 34445556677777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.27  E-value=2.6e-11  Score=107.66  Aligned_cols=100  Identities=26%  Similarity=0.379  Sum_probs=53.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.|++++|.+.+..+  +..+++|+.|++++|.+++. +. +..+++|+.|++++|++++..+  +..+++|+.|+
T Consensus       242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~  315 (466)
T 1o6v_A          242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT  315 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred             CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence            4456666666666655333  55556666666666666532 22 5555666666666666653322  45555666666


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n  155 (241)
                      +++|.+++..| ...+..+..+++.+|
T Consensus       316 L~~n~l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          316 LYFNNISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             CcCCcCCCchh-hccCccCCEeECCCC
Confidence            66666554433 223344444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.27  E-value=1.2e-11  Score=113.50  Aligned_cols=145  Identities=23%  Similarity=0.290  Sum_probs=107.0

Q ss_pred             CCCCccccccccCCCCccccc-ccc--eeEEEEEeeccccccc-CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255            6 TSELRYLQDVLFPYGQVSSNV-LGT--YDYSMTMNSKGRMMTY-NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~-~~~--~~~~~~~~~~~~~~~~-~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      +..|+.|+.++++.+.+.... +..  ....+.++...+.... ..-+++|+.|+|++|.+.+ +| .+..+++|+.|+|
T Consensus        39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEEC
T ss_pred             hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEe
Confidence            455777888888888887542 122  2223333333222111 2347789999999999977 33 6888999999999


Q ss_pred             ccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255           82 HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus        82 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      ++|.+++ ++ .+..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++..| ...+..+..+++++|..
T Consensus       117 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          117 EHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             TTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             cCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence            9999984 44 588899999999999999854  568889999999999999997666 66678888888888854

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.25  E-value=4.5e-11  Score=106.11  Aligned_cols=80  Identities=35%  Similarity=0.345  Sum_probs=46.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++ +|  +..+++|+.|+
T Consensus       169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred             CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence            3455555555555555 22  45555566666666665532   25556666666666666664 44  55566666666


Q ss_pred             ccCCcccCC
Q 026255          129 VSDNYLTGP  137 (241)
Q Consensus       129 l~~N~l~g~  137 (241)
                      +++|++++.
T Consensus       240 l~~N~l~~~  248 (457)
T 3bz5_A          240 CSVNPLTEL  248 (457)
T ss_dssp             CCSSCCSCC
T ss_pred             eeCCcCCCc
Confidence            666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.24  E-value=2.5e-11  Score=110.48  Aligned_cols=97  Identities=29%  Similarity=0.393  Sum_probs=49.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhcccc----
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL----  124 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L----  124 (241)
                      +++|+.|+|++|.|++ +|.   .+++|+.|+|++|.+++ +|. |.  ++|+.|++++|+|+ .+|. +..  +|    
T Consensus       139 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~  206 (571)
T 3cvr_A          139 PALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSE  206 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------
T ss_pred             CccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhccc
Confidence            4455555555555554 332   34555555555555553 444 43  55566666666555 4444 332  44    


Q ss_pred             ---ceEeccCCcccCCCCC-CCccCccCcccccCCCCC
Q 026255          125 ---EFFNVSDNYLTGPIPQ-GKQFATFDNTSFDANSGL  158 (241)
Q Consensus       125 ---~~L~l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~l  158 (241)
                         +.|++++|.++ .+|. ...+..+..+++++|+..
T Consensus       207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence               56666666665 3343 233455555566666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.23  E-value=2e-11  Score=108.37  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCC
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH   89 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~   89 (241)
                      +++|+.|++++|++++ +|  +..+++|+.|++++|.+++.
T Consensus       211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred             CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence            3455555555555554 23  44555555555555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.20  E-value=8.1e-11  Score=107.16  Aligned_cols=77  Identities=30%  Similarity=0.469  Sum_probs=36.8

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+++|+.|++++|.|++ +|. +..  +|+.|++++|.+++ +|.   .+++|+.|++++|++++ +|.   .+++|+.
T Consensus        97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~  164 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV  164 (571)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred             cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE
Confidence            334555555555555554 333 332  45555555555553 333   34445555555555542 333   2344444


Q ss_pred             EeccCCccc
Q 026255          127 FNVSDNYLT  135 (241)
Q Consensus       127 L~l~~N~l~  135 (241)
                      |++++|.++
T Consensus       165 L~Ls~N~L~  173 (571)
T 3cvr_A          165 LSVRNNQLT  173 (571)
T ss_dssp             EECCSSCCS
T ss_pred             EECCCCCCC
Confidence            555555444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.19  E-value=2.8e-11  Score=103.60  Aligned_cols=107  Identities=12%  Similarity=0.133  Sum_probs=84.4

Q ss_pred             EEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCc-cccCCCCccce-eeccCCcC
Q 026255           33 SMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP-SCLGNLTNLES-LDLSNNKF  110 (241)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~Ls~N~l  110 (241)
                      .+.|+.+++...+..+++++++|+|++|+|+.+.+..|.++++|++|+|++|.+.+.+| ..|.+++++.. +.+..|++
T Consensus        13 ~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             EEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             EEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            35677777766666778889999999999988666778999999999999999866555 45778887765 56677888


Q ss_pred             CCCCchhHhhccccceEeccCCcccCCCC
Q 026255          111 SGRIPQQLVELTFLEFFNVSDNYLTGPIP  139 (241)
Q Consensus       111 ~~~~p~~l~~l~~L~~L~l~~N~l~g~~p  139 (241)
                      +...|..|..+++|++|++++|.+++..+
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             cccCchhhhhccccccccccccccccCCc
Confidence            86667788888999999999998875433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.17  E-value=6.4e-11  Score=108.95  Aligned_cols=79  Identities=28%  Similarity=0.402  Sum_probs=37.3

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      ++|+.|++++|.|++ +|   ..+++|+.|++++|.++ .+|.   .+++|+.|++++|+++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            444444555554444 22   23344555555555544 3333   3344555555555554 44444555555555555


Q ss_pred             cCCcccCC
Q 026255          130 SDNYLTGP  137 (241)
Q Consensus       130 ~~N~l~g~  137 (241)
                      ++|++++.
T Consensus       292 ~~N~l~~~  299 (622)
T 3g06_A          292 EGNPLSER  299 (622)
T ss_dssp             CSCCCCHH
T ss_pred             cCCCCCCc
Confidence            55555443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.13  E-value=2e-10  Score=105.66  Aligned_cols=76  Identities=24%  Similarity=0.327  Sum_probs=52.4

Q ss_pred             CCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccc
Q 026255           74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSF  152 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~  152 (241)
                      ++|+.|++++|.+++ +|   ..+++|+.|++++|+|+ .+|.   .+++|+.|++++|.++ .+|.. ..+..+..+++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            566777777777763 44   34567777788888777 5555   4577888888888887 55543 45667777888


Q ss_pred             cCCCCC
Q 026255          153 DANSGL  158 (241)
Q Consensus       153 ~~n~~l  158 (241)
                      .+|+..
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            888754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.13  E-value=2.2e-10  Score=101.61  Aligned_cols=137  Identities=20%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             CCCCccccccccCCCCcccccc-cceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccC
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL-GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN   84 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N   84 (241)
                      +.+++.|+.++++.|+++.... ......+.++...+.. ++..+++|++|++++|.+++. |..   .++|+.|++++|
T Consensus       233 ~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N  307 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSN  307 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSS
T ss_pred             cCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcc-cCc---CCcCCEEECcCC
Confidence            4455666666666666654211 1112222222222221 222345566666666665551 110   134444444444


Q ss_pred             cCCCCCccccCCC-CccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCC
Q 026255           85 NLQGHIPSCLGNL-TNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLC  159 (241)
Q Consensus        85 ~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc  159 (241)
                      .+++ ++    .+ ++|+.|++++|++++ +|..   +++|+.|++++|.++ .+|.  .+..+..+++++|...+
T Consensus       308 ~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~--~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          308 EIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE--LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCSS
T ss_pred             cCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc--hhhhccEEECCCCCCCc
Confidence            4442 11    12 356666666666663 4432   355666666666666 3444  34555666666665443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.12  E-value=8.5e-11  Score=104.26  Aligned_cols=136  Identities=19%  Similarity=0.164  Sum_probs=73.3

Q ss_pred             ccccccccCCCCcccccc-cceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCC-CCCceEecccCcCC
Q 026255           10 RYLQDVLFPYGQVSSNVL-GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNL-KGLQVLNLHNNNLQ   87 (241)
Q Consensus        10 ~~L~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l-~~L~~L~Ls~N~l~   87 (241)
                      ++|+.++++.|+++.... ......++++...+.. ...++++|+.|++++|.+++. +    .+ ++|+.|++++|.++
T Consensus       257 ~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~-l~~~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~  330 (454)
T 1jl5_A          257 PSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLI  330 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCS
T ss_pred             cccCEEECCCCcccccCcccCcCCEEECcCCccCc-ccCcCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCccc
Confidence            566677777777765221 1112223333322221 223456788888888887662 2    22 47788888888887


Q ss_pred             CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccC--CCCCC-Ccc-------------CccCccc
Q 026255           88 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG--PIPQG-KQF-------------ATFDNTS  151 (241)
Q Consensus        88 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g--~~p~~-~~~-------------~~l~~~~  151 (241)
                      + +|..   +++|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.. ..+             ..+..++
T Consensus       331 ~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~  402 (454)
T 1jl5_A          331 E-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH  402 (454)
T ss_dssp             C-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------
T ss_pred             c-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE
Confidence            4 5543   467788888888887 5665   36778888888888877  55543 122             4566677


Q ss_pred             ccCCCCCC
Q 026255          152 FDANSGLC  159 (241)
Q Consensus       152 ~~~n~~lc  159 (241)
                      +++|+...
T Consensus       403 ls~N~l~~  410 (454)
T 1jl5_A          403 VETNPLRE  410 (454)
T ss_dssp             --------
T ss_pred             CCCCcCCc
Confidence            77776543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.09  E-value=1.7e-12  Score=102.34  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=87.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|++|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            6789999999999987 55 7888999999999999998 778777778899999999999984 55 588899999999


Q ss_pred             ccCCcccCCCC--CCCccCccCcccccCCCCCCC
Q 026255          129 VSDNYLTGPIP--QGKQFATFDNTSFDANSGLCG  160 (241)
Q Consensus       129 l~~N~l~g~~p--~~~~~~~l~~~~~~~n~~lc~  160 (241)
                      +++|.+++..+  ....+..+..+++.+|+..|.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            99999884222  234567788888888876554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.08  E-value=6.4e-12  Score=108.80  Aligned_cols=111  Identities=15%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             CcCccEEEccCCCCCc-----cchhhhcCCCCCceEecccCcCC----CCCccccCCCCccceeeccCCcCCCC----Cc
Q 026255           49 PDILTGIILSNNRFDE-----AIPASISNLKGLQVLNLHNNNLQ----GHIPSCLGNLTNLESLDLSNNKFSGR----IP  115 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~-----~~p~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p  115 (241)
                      +++|++|++++|.+..     ..+..+..+++|+.|+|++|.++    +.+|..+..+++|+.|++++|.+++.    +|
T Consensus       186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~  265 (386)
T 2ca6_A          186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  265 (386)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence            3466677777776652     23335666677777777777764    45666666777777777777777644    34


Q ss_pred             hhHhh--ccccceEeccCCcccC----CCCCCC--ccCccCcccccCCCCCC
Q 026255          116 QQLVE--LTFLEFFNVSDNYLTG----PIPQGK--QFATFDNTSFDANSGLC  159 (241)
Q Consensus       116 ~~l~~--l~~L~~L~l~~N~l~g----~~p~~~--~~~~l~~~~~~~n~~lc  159 (241)
                      ..+..  +++|+.|++++|.+++    .+|...  .++.+..+++.+|+...
T Consensus       266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            44433  6777777777777765    244332  24667777777776544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.07  E-value=2.5e-11  Score=102.74  Aligned_cols=151  Identities=14%  Similarity=0.122  Sum_probs=79.1

Q ss_pred             CCCCccccccccCCCCcccccc----cce--eEEEEEeeccccccc---CccCcCccEEEccCC-CCCcc-chhhhcCCC
Q 026255            6 TSELRYLQDVLFPYGQVSSNVL----GTY--DYSMTMNSKGRMMTY---NKIPDILTGIILSNN-RFDEA-IPASISNLK   74 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~~~~----~~~--~~~~~~~~~~~~~~~---~~~~~~L~~L~L~~n-~i~~~-~p~~~~~l~   74 (241)
                      +.+++.|+.++++.|.++...+    ...  ...+.++...+....   ..-+++|++|++++| .+++. ++..+..++
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            4456778888888887653211    111  112222221111100   011556666666666 45542 455566666


Q ss_pred             CCceEecccC-cCCCC-CccccCCCC-ccceeeccCC--cCC-CCCchhHhhccccceEeccCCc-ccCCCC-CCCccCc
Q 026255           75 GLQVLNLHNN-NLQGH-IPSCLGNLT-NLESLDLSNN--KFS-GRIPQQLVELTFLEFFNVSDNY-LTGPIP-QGKQFAT  146 (241)
Q Consensus        75 ~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~l~~l~~L~~L~l~~N~-l~g~~p-~~~~~~~  146 (241)
                      +|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+ ....++.
T Consensus       169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~  248 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  248 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence            6666666666 66543 445555666 6666666666  343 2345555566666666666666 443222 2233455


Q ss_pred             cCcccccCCC
Q 026255          147 FDNTSFDANS  156 (241)
Q Consensus       147 l~~~~~~~n~  156 (241)
                      +..+++.+|.
T Consensus       249 L~~L~l~~~~  258 (336)
T 2ast_B          249 LQHLSLSRCY  258 (336)
T ss_dssp             CCEEECTTCT
T ss_pred             CCEeeCCCCC
Confidence            5555665553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.02  E-value=2.2e-11  Score=103.10  Aligned_cols=148  Identities=13%  Similarity=0.159  Sum_probs=97.7

Q ss_pred             ccccccccCCCCccccccc----ceeEEEEEeecccccc-c---CccCcCccEEEccCCCCCccchhhhcCCCCCceEec
Q 026255           10 RYLQDVLFPYGQVSSNVLG----TYDYSMTMNSKGRMMT-Y---NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNL   81 (241)
Q Consensus        10 ~~L~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~-~---~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~L   81 (241)
                      +.++.++++.|.++.....    .....++++...+... .   ..-+++|++|++++|.+++..+..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            5566777777777653321    1122222222222111 1   123678888999988888777888888888999999


Q ss_pred             ccC-cCCCC-CccccCCCCccceeeccCC-cCCCC-CchhHhhcc-ccceEeccCCc--cc-CCCCCC-CccCccCcccc
Q 026255           82 HNN-NLQGH-IPSCLGNLTNLESLDLSNN-KFSGR-IPQQLVELT-FLEFFNVSDNY--LT-GPIPQG-KQFATFDNTSF  152 (241)
Q Consensus        82 s~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~-~L~~L~l~~N~--l~-g~~p~~-~~~~~l~~~~~  152 (241)
                      ++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.+|.. ..++.+..+++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            888 57652 5666778888999999888 88753 566777888 89999998884  43 222221 24567777788


Q ss_pred             cCCCC
Q 026255          153 DANSG  157 (241)
Q Consensus       153 ~~n~~  157 (241)
                      .+|..
T Consensus       230 ~~~~~  234 (336)
T 2ast_B          230 SDSVM  234 (336)
T ss_dssp             TTCTT
T ss_pred             CCCCc
Confidence            87764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.01  E-value=8.3e-11  Score=101.75  Aligned_cols=130  Identities=15%  Similarity=0.171  Sum_probs=97.2

Q ss_pred             ccccccccCCCCccccccc---------ceeEEEEEeecccccc--------cCccCcCccEEEccCCCCC----ccchh
Q 026255           10 RYLQDVLFPYGQVSSNVLG---------TYDYSMTMNSKGRMMT--------YNKIPDILTGIILSNNRFD----EAIPA   68 (241)
Q Consensus        10 ~~L~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~--------~~~~~~~L~~L~L~~n~i~----~~~p~   68 (241)
                      +.|+.++++.|+++.....         .....+.+....+...        ...-+++|+.|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            6777778888877632221         1233344444433310        2234678999999999996    56788


Q ss_pred             hhcCCCCCceEecccCcCCCC----Ccccc--CCCCccceeeccCCcCCC----CCchhH-hhccccceEeccCCcccCC
Q 026255           69 SISNLKGLQVLNLHNNNLQGH----IPSCL--GNLTNLESLDLSNNKFSG----RIPQQL-VELTFLEFFNVSDNYLTGP  137 (241)
Q Consensus        69 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~l~~N~l~g~  137 (241)
                      .+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|++++|.+++    .+|..+ ..+++|++|++++|.+++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            899999999999999999865    56666  448999999999999996    478777 5689999999999999976


Q ss_pred             CC
Q 026255          138 IP  139 (241)
Q Consensus       138 ~p  139 (241)
                      .+
T Consensus       319 ~~  320 (386)
T 2ca6_A          319 DD  320 (386)
T ss_dssp             SH
T ss_pred             hh
Confidence            54

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=1.2e-10  Score=100.11  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             CccccccccCCCCcccccc----cc------eeEEEEEeecccccccC----cc----CcCccEEEccCCCCCccchhhh
Q 026255            9 LRYLQDVLFPYGQVSSNVL----GT------YDYSMTMNSKGRMMTYN----KI----PDILTGIILSNNRFDEAIPASI   70 (241)
Q Consensus         9 l~~L~~~~~~~~~l~~~~~----~~------~~~~~~~~~~~~~~~~~----~~----~~~L~~L~L~~n~i~~~~p~~~   70 (241)
                      .+.|+.++++.|.++....    ..      ....++++...+.....    ..    +++|++|+|++|.+++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            4558888999998876442    11      23334444433332211    11    2788899999998887666644


Q ss_pred             c----CC-CCCceEecccCcCCCCCcccc----CC-CCccceeeccCCcCCCCCchh----Hhhcc-ccceEeccCCccc
Q 026255           71 S----NL-KGLQVLNLHNNNLQGHIPSCL----GN-LTNLESLDLSNNKFSGRIPQQ----LVELT-FLEFFNVSDNYLT  135 (241)
Q Consensus        71 ~----~l-~~L~~L~Ls~N~l~~~~p~~~----~~-l~~L~~L~Ls~N~l~~~~p~~----l~~l~-~L~~L~l~~N~l~  135 (241)
                      .    .+ ++|+.|++++|.+++..+..+    .. ..+|++|++++|++++..+..    +..++ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence            3    34 789999999999886665443    33 258899999999888644443    34444 8999999999887


Q ss_pred             CCCCCC-----Ccc-CccCcccccCCCC
Q 026255          136 GPIPQG-----KQF-ATFDNTSFDANSG  157 (241)
Q Consensus       136 g~~p~~-----~~~-~~l~~~~~~~n~~  157 (241)
                      +..+..     ... ..+..+++++|..
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            654421     112 4777888888853

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.98  E-value=8.1e-11  Score=101.14  Aligned_cols=85  Identities=22%  Similarity=0.248  Sum_probs=45.6

Q ss_pred             CccEEEccCCCCCccchhhhcCC-----CCCceEecccCcCCCCCccccC----CC-CccceeeccCCcCCCCCchhHhh
Q 026255           51 ILTGIILSNNRFDEAIPASISNL-----KGLQVLNLHNNNLQGHIPSCLG----NL-TNLESLDLSNNKFSGRIPQQLVE  120 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~l~~  120 (241)
                      +|++|+|++|.+++..+..+..+     ++|++|++++|.+++..+..+.    .+ ++|+.|++++|++++..+..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            56666666666655444444443     5566666666666544444322    22 55666666666665444443332


Q ss_pred             -----ccccceEeccCCccc
Q 026255          121 -----LTFLEFFNVSDNYLT  135 (241)
Q Consensus       121 -----l~~L~~L~l~~N~l~  135 (241)
                           .++|++|++++|.++
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCceeEEEccCCcCC
Confidence                 135666666666655

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.97  E-value=5.7e-12  Score=99.31  Aligned_cols=104  Identities=21%  Similarity=0.251  Sum_probs=86.7

Q ss_pred             cCccEEEccCCCCCccchh------hhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccc
Q 026255           50 DILTGIILSNNRFDEAIPA------SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTF  123 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  123 (241)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~   94 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence            4566667777777666655      89999999999999999995 77 7899999999999999999 78888888899


Q ss_pred             cceEeccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          124 LEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       124 L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      |+.|++++|.+++ +|....+..+..+++++|..
T Consensus        95 L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i  127 (198)
T 1ds9_A           95 LEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKI  127 (198)
T ss_dssp             CSEEEEEEEECCC-HHHHHHHHHSSEEEESEEEC
T ss_pred             CCEEECcCCcCCc-CCccccCCCCCEEECCCCcC
Confidence            9999999999985 55445566788888888853

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.92  E-value=1.8e-09  Score=92.37  Aligned_cols=145  Identities=14%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             CCCCccccccccCCCCccc-ccc------cceeEEEEEeecccccc---cCccCcCccEEEccCCCCCccchhhhcCCC-
Q 026255            6 TSELRYLQDVLFPYGQVSS-NVL------GTYDYSMTMNSKGRMMT---YNKIPDILTGIILSNNRFDEAIPASISNLK-   74 (241)
Q Consensus         6 ~~~l~~L~~~~~~~~~l~~-~~~------~~~~~~~~~~~~~~~~~---~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~-   74 (241)
                      +++|++|+.++++.|++.. ...      .............+...   ...-+++|++|++++|.+.+..+..+.... 
T Consensus        50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  129 (350)
T 4ay9_X           50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ  129 (350)
T ss_dssp             STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSS
T ss_pred             HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccch
Confidence            5677777778888777633 111      11122223332222221   122356677777777776654333222222 


Q ss_pred             -------------------------CCceEecccCcCCCCCccccCCCCccceeeccC-CcCCCCCc-hhHhhccccceE
Q 026255           75 -------------------------GLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN-NKFSGRIP-QQLVELTFLEFF  127 (241)
Q Consensus        75 -------------------------~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p-~~l~~l~~L~~L  127 (241)
                                               .++.|++++|.++ .+|.......+|+.+++++ |.++ .+| +.|..+++|+.|
T Consensus       130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~L  207 (350)
T 4ay9_X          130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL  207 (350)
T ss_dssp             CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEE
T ss_pred             hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchh
Confidence                                     3455566666666 3443333445666666653 4444 444 345667777777


Q ss_pred             eccCCcccCCCCCCCccCccCcccccC
Q 026255          128 NVSDNYLTGPIPQGKQFATFDNTSFDA  154 (241)
Q Consensus       128 ~l~~N~l~g~~p~~~~~~~l~~~~~~~  154 (241)
                      ++++|+++ .+|.. .+..+..+...+
T Consensus       208 dLs~N~l~-~lp~~-~~~~L~~L~~l~  232 (350)
T 4ay9_X          208 DISRTRIH-SLPSY-GLENLKKLRARS  232 (350)
T ss_dssp             ECTTSCCC-CCCSS-SCTTCCEEECTT
T ss_pred             hcCCCCcC-ccChh-hhccchHhhhcc
Confidence            77777776 34432 233444444333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.79  E-value=1.2e-10  Score=102.69  Aligned_cols=108  Identities=17%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCCCccccC-----CCCccceeeccCCcCCCC----Cc
Q 026255           49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLESLDLSNNKFSGR----IP  115 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~----~p  115 (241)
                      +++|++|++++|.++..    ++..+..+++|+.|++++|.+++..+..+.     ..++|+.|++++|.+++.    ++
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            56788888888888764    466677788888888888887644333332     225788888888887754    45


Q ss_pred             hhHhhccccceEeccCCcccCCCCCC------CccCccCcccccCCC
Q 026255          116 QQLVELTFLEFFNVSDNYLTGPIPQG------KQFATFDNTSFDANS  156 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~~N~l~g~~p~~------~~~~~l~~~~~~~n~  156 (241)
                      ..+..+++|++|++++|.+++..+..      .....+..+++++|.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            55666788888888888776432211      013456666666664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.78  E-value=5.3e-10  Score=98.48  Aligned_cols=128  Identities=16%  Similarity=0.096  Sum_probs=62.6

Q ss_pred             CCccccccccCCCCccccccc---------ceeEEEEEeecccccc----cC----ccCcCccEEEccCCCCCcc----c
Q 026255            8 ELRYLQDVLFPYGQVSSNVLG---------TYDYSMTMNSKGRMMT----YN----KIPDILTGIILSNNRFDEA----I   66 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~----~~----~~~~~L~~L~L~~n~i~~~----~   66 (241)
                      +++.|+.++++.|.++.....         .....++++...+...    +.    ...++|++|++++|.+++.    +
T Consensus       254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  333 (461)
T 1z7x_W          254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHF  333 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHH
Confidence            567888889999888753210         0111122222111100    00    0113555566666555543    3


Q ss_pred             hhhhcCCCCCceEecccCcCCCCCccccCC-----CCccceeeccCCcCCC----CCchhHhhccccceEeccCCccc
Q 026255           67 PASISNLKGLQVLNLHNNNLQGHIPSCLGN-----LTNLESLDLSNNKFSG----RIPQQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        67 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~l~~l~~L~~L~l~~N~l~  135 (241)
                      +..+..+++|+.|++++|.+++..+..+..     .++|+.|++++|++++    .+|..+..+++|++|++++|+++
T Consensus       334 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          334 SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            344445555666666666555333322221     3455666666665553    44555555555666666665554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.70  E-value=1.7e-08  Score=85.42  Aligned_cols=85  Identities=15%  Similarity=0.121  Sum_probs=74.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccc-eeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLE-SLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|+.++|++|+++.+.+..|.++.+|+.+++++| ++...+..|.++.+|+ .+++.+ .++...+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999998888888999999999999998 7766677899999999 999988 7775666789999999999


Q ss_pred             eccCCccc
Q 026255          128 NVSDNYLT  135 (241)
Q Consensus       128 ~l~~N~l~  135 (241)
                      +++.|.++
T Consensus       303 ~l~~n~i~  310 (329)
T 3sb4_A          303 LATGDKIT  310 (329)
T ss_dssp             EECSSCCC
T ss_pred             EeCCCccC
Confidence            99999887

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.67  E-value=2.5e-08  Score=82.21  Aligned_cols=67  Identities=30%  Similarity=0.378  Sum_probs=39.7

Q ss_pred             cCCCCCceEecccCcCCC--CCccccCCCCccceeeccCCcCCCCCchhHhhcc--ccceEeccCCcccCCCC
Q 026255           71 SNLKGLQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELT--FLEFFNVSDNYLTGPIP  139 (241)
Q Consensus        71 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~l~~N~l~g~~p  139 (241)
                      .++++|+.|+|++|.+++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|+.|++++|.+.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            345666666666666664  2334455666666666666666633  2233333  66666676666665554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.64  E-value=5.1e-09  Score=90.53  Aligned_cols=108  Identities=17%  Similarity=0.129  Sum_probs=70.9

Q ss_pred             CcCccEEEccCCCCCccchhhh-----cCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC----Cc
Q 026255           49 PDILTGIILSNNRFDEAIPASI-----SNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR----IP  115 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p  115 (241)
                      +.+|+.|+|++|.++......+     ...+.|+.|+|++|.++..    ++..+...++|++|+|++|.++..    ++
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            4578888888888865433333     2457788888888887632    344456677888888888887642    23


Q ss_pred             hhHhhccccceEeccCCcccCCCC----CC-CccCccCcccccCCC
Q 026255          116 QQLVELTFLEFFNVSDNYLTGPIP----QG-KQFATFDNTSFDANS  156 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~~N~l~g~~p----~~-~~~~~l~~~~~~~n~  156 (241)
                      ..+...++|+.|++++|.++..-.    .. ...+++..+++++|+
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            445566788888888888763211    00 123566777777775

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.59  E-value=6.1e-10  Score=96.33  Aligned_cols=86  Identities=21%  Similarity=0.253  Sum_probs=53.8

Q ss_pred             cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC----Cchh
Q 026255           50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR----IPQQ  117 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  117 (241)
                      +.|++|+|++|.|+..    ++..+...++|++|+|++|.++..    ++..+...++|+.|+|++|.++..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            5677777777777542    333445667777777777776532    234455566777777777777632    2233


Q ss_pred             HhhccccceEeccCCccc
Q 026255          118 LVELTFLEFFNVSDNYLT  135 (241)
Q Consensus       118 l~~l~~L~~L~l~~N~l~  135 (241)
                      +...++|++|++++|.++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            444567777777777765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.49  E-value=1.9e-08  Score=82.92  Aligned_cols=78  Identities=24%  Similarity=0.303  Sum_probs=58.3

Q ss_pred             CcCccEEEccCCCCCc--cchhhhcCCCCCceEecccCcCCCCCccccCCCC--ccceeeccCCcCCCCCch-------h
Q 026255           49 PDILTGIILSNNRFDE--AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLT--NLESLDLSNNKFSGRIPQ-------Q  117 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~  117 (241)
                      +++|+.|+|++|.|++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|+|++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            5678999999999987  3446677888999999999998854  2233333  888999999998866652       3


Q ss_pred             HhhccccceEe
Q 026255          118 LVELTFLEFFN  128 (241)
Q Consensus       118 l~~l~~L~~L~  128 (241)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56778888775

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=4.9e-07  Score=76.36  Aligned_cols=103  Identities=13%  Similarity=-0.024  Sum_probs=82.8

Q ss_pred             CccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCc-eEecccCcCC
Q 026255            9 LRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQ-VLNLHNNNLQ   87 (241)
Q Consensus         9 l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~-~L~Ls~N~l~   87 (241)
                      ++.|+.++++.|+++.....                -..-+.+|+.|+|++| +..+.+..|.++.+|+ .+++.+ .++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~----------------aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~  286 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDF----------------TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT  286 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTT----------------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC
T ss_pred             cCCCeEEECCCCCcceecHh----------------hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce
Confidence            45666777777666633321                1223678999999998 8888888999999999 999999 777


Q ss_pred             CCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           88 GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        88 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      ...+..|.++++|+.++++.|+++...+..|.++++|+.++.
T Consensus       287 ~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          287 AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            677789999999999999999999666678999999998863

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.33  E-value=6.8e-08  Score=75.17  Aligned_cols=85  Identities=18%  Similarity=0.211  Sum_probs=42.7

Q ss_pred             cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeec--cCCcCCCC----Cc
Q 026255           50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDL--SNNKFSGR----IP  115 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p  115 (241)
                      +.|++|+|++|.|...    +...+...+.|++|+|++|.+...    +...+...++|++|++  ++|.++..    +.
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~  144 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  144 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence            3456666666665431    222333445566666666665532    2334444555666666  55655532    12


Q ss_pred             hhHhhccccceEeccCCcc
Q 026255          116 QQLVELTFLEFFNVSDNYL  134 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~~N~l  134 (241)
                      ..+...++|++|++++|.+
T Consensus       145 ~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          145 NMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCCCcCEEeccCCCC
Confidence            2333345566666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.11  E-value=7.8e-07  Score=80.59  Aligned_cols=63  Identities=17%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             CCCCceEecccCcCCC-CCccccCCCCccceeeccCCcCCCC-CchhHhhccccceEeccCCccc
Q 026255           73 LKGLQVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGR-IPQQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        73 l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~  135 (241)
                      +++|++|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|++|++++|+++
T Consensus       462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            4445555555555443 1223334445555555555554322 2222334455555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.07  E-value=1.7e-06  Score=67.17  Aligned_cols=87  Identities=16%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CcCccEEEccCC-CCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC----Cc
Q 026255           49 PDILTGIILSNN-RFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR----IP  115 (241)
Q Consensus        49 ~~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p  115 (241)
                      .+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.|+..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            567999999999 88642    345566778999999999998743    334455567899999999999843    34


Q ss_pred             hhHhhccccceEec--cCCccc
Q 026255          116 QQLVELTFLEFFNV--SDNYLT  135 (241)
Q Consensus       116 ~~l~~l~~L~~L~l--~~N~l~  135 (241)
                      ..+...++|++|++  ++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHhCCCceEEEecCCCCCCC
Confidence            45566778999999  788886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.99  E-value=1.5e-06  Score=78.80  Aligned_cols=60  Identities=12%  Similarity=-0.048  Sum_probs=31.8

Q ss_pred             ccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCC--CCccCccCccccc
Q 026255           93 CLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQ--GKQFATFDNTSFD  153 (241)
Q Consensus        93 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~--~~~~~~l~~~~~~  153 (241)
                      .+..+++|+.++++++... .+|..+..+++|++|++++|.+++....  ...++.+..+++.
T Consensus       265 ~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             HhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            3444455555555554332 5566666777777788777775432211  1233445555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.90  E-value=3.7e-06  Score=64.73  Aligned_cols=83  Identities=11%  Similarity=0.100  Sum_probs=62.9

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCc-CCCCCccccCCC----CccceeeccCCc-CCCCCchhHhhcccc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNN-LQGHIPSCLGNL----TNLESLDLSNNK-FSGRIPQQLVELTFL  124 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~l~~l~~L  124 (241)
                      .|+.||++++.|+..--..+..+++|+.|+|+++. ++..--..+..+    ++|+.|+|+++. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58999999999876555567889999999999985 654333445554    479999999985 774433456778999


Q ss_pred             ceEeccCCc
Q 026255          125 EFFNVSDNY  133 (241)
Q Consensus       125 ~~L~l~~N~  133 (241)
                      ++|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            999999874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.86  E-value=1.1e-06  Score=79.63  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=48.3

Q ss_pred             hcCCCCCceEecccCcCCCCCccccCC-CCccceeeccCCcCCCCCchhH-hhccccceEeccCCcccCCCCC--CCccC
Q 026255           70 ISNLKGLQVLNLHNNNLQGHIPSCLGN-LTNLESLDLSNNKFSGRIPQQL-VELTFLEFFNVSDNYLTGPIPQ--GKQFA  145 (241)
Q Consensus        70 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~g~~p~--~~~~~  145 (241)
                      +..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++....  ...++
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~  506 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE  506 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence            34455555555544 344333333333 5667777777777764444333 4567777777777776432111  12345


Q ss_pred             ccCcccccCCCC
Q 026255          146 TFDNTSFDANSG  157 (241)
Q Consensus       146 ~l~~~~~~~n~~  157 (241)
                      .+..+++.+|+.
T Consensus       507 ~L~~L~l~~~~~  518 (594)
T 2p1m_B          507 TMRSLWMSSCSV  518 (594)
T ss_dssp             GSSEEEEESSCC
T ss_pred             CCCEEeeeCCCC
Confidence            666667766653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.85  E-value=3.3e-06  Score=76.43  Aligned_cols=86  Identities=13%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcC-CCCCceEecccCcCCCCCcccc-CCCCccceeeccCCcCCCCCch-hHhhccccc
Q 026255           49 PDILTGIILSNNRFDEAIPASISN-LKGLQVLNLHNNNLQGHIPSCL-GNLTNLESLDLSNNKFSGRIPQ-QLVELTFLE  125 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~  125 (241)
                      +++|+.|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... .+..+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            56788888876 666655555555 8999999999999876555544 5689999999999999644333 344589999


Q ss_pred             eEeccCCccc
Q 026255          126 FFNVSDNYLT  135 (241)
Q Consensus       126 ~L~l~~N~l~  135 (241)
                      .|++++|+++
T Consensus       510 ~L~l~~~~~~  519 (594)
T 2p1m_B          510 SLWMSSCSVS  519 (594)
T ss_dssp             EEEEESSCCB
T ss_pred             EEeeeCCCCC
Confidence            9999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.74  E-value=5.7e-05  Score=65.65  Aligned_cols=123  Identities=12%  Similarity=0.048  Sum_probs=56.9

Q ss_pred             CCCCCccccccccCCCCccccccccee----EEEEEee--cccccccCccCcCccEEEccCCCCCccchhhhcCCCCCce
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVLGTYD----YSMTMNS--KGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQV   78 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~   78 (241)
                      .+.++++|+.++++.|.++......+.    ..+.+..  +.+...-..-+.+|+.+++..| +..+....|.+ .+|+.
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            345566666777777666554332221    1111110  0000000112445666666543 33333344444 44555


Q ss_pred             EecccCcCCCCCccccCCCCccceeeccCCcCC-----CCCchhHhhccccceEecc
Q 026255           79 LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS-----GRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        79 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~~L~~L~l~  130 (241)
                      +.+ .+.++......|.++++|+.+++.+|.+.     ...+..|..+++|+.+++.
T Consensus       253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            555 23344334455556666666666555543     1233445556666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.63  E-value=6.5e-05  Score=54.83  Aligned_cols=56  Identities=21%  Similarity=0.291  Sum_probs=32.9

Q ss_pred             EEEccCCCCC-ccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCC
Q 026255           54 GIILSNNRFD-EAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS  111 (241)
Q Consensus        54 ~L~L~~n~i~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  111 (241)
                      .++.++++++ ..+|..+.  .+|+.|+|++|.|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666665 12443221  35666777777776444455666667777777777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.54  E-value=0.00011  Score=63.79  Aligned_cols=104  Identities=11%  Similarity=0.059  Sum_probs=73.9

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCC-----CCCccccCCCCccceeeccCCcCCCCCchhHhhcccc
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ-----GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFL  124 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  124 (241)
                      .+|+.+.+ .+.+..+....|.++++|+.+++.+|.+.     ...+..|.++++|+.+++.+ .++..-...|.++.+|
T Consensus       248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L  325 (401)
T 4fdw_A          248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKV  325 (401)
T ss_dssp             CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSC
T ss_pred             CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCc
Confidence            56888888 45577767788899999999999888765     35566788899999999984 5764555678888999


Q ss_pred             ceEeccCCcccCCCCCCCccCccCcccccCCC
Q 026255          125 EFFNVSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus       125 ~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      +.+++..| ++..-+....-..+..+.+.+|.
T Consensus       326 ~~l~lp~~-l~~I~~~aF~~~~L~~l~l~~n~  356 (401)
T 4fdw_A          326 TQLTIPAN-VTQINFSAFNNTGIKEVKVEGTT  356 (401)
T ss_dssp             CEEEECTT-CCEECTTSSSSSCCCEEEECCSS
T ss_pred             cEEEECcc-ccEEcHHhCCCCCCCEEEEcCCC
Confidence            99999665 44222222111266677777763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.53  E-value=2.1e-05  Score=67.54  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=19.2

Q ss_pred             CCccceeeccCCcCCCCCchhHh---hccccceEeccCCccc
Q 026255           97 LTNLESLDLSNNKFSGRIPQQLV---ELTFLEFFNVSDNYLT  135 (241)
Q Consensus        97 l~~L~~L~Ls~N~l~~~~p~~l~---~l~~L~~L~l~~N~l~  135 (241)
                      +++|+.|++.+|.++...+..+.   .+++|++|+++.|.+.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence            45555555555555432222222   2455555555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.46  E-value=3.5e-05  Score=66.13  Aligned_cols=64  Identities=22%  Similarity=0.410  Sum_probs=38.8

Q ss_pred             CCCCCceEecccCcCCCCCcccc---CCCCccceeeccCCcCCCC----CchhHhhccccceEeccCCccc
Q 026255           72 NLKGLQVLNLHNNNLQGHIPSCL---GNLTNLESLDLSNNKFSGR----IPQQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        72 ~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  135 (241)
                      .+++|+.|+|++|.+....+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            35667777776666653222222   2466777777777777642    2333455677777777777665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.30  E-value=0.00034  Score=50.92  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             ccceeeccCCcCCCCCchhHhhccccceEeccCCccc
Q 026255           99 NLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        99 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~  135 (241)
                      +|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555555333334445555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.41  E-value=0.0081  Score=51.54  Aligned_cols=80  Identities=10%  Similarity=0.040  Sum_probs=44.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ..+|+.+.+..+ +..+-...|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..| ++..-..+|.++.+|+.++
T Consensus       296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  372 (394)
T 4fs7_A          296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE  372 (394)
T ss_dssp             CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred             cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence            445666665443 44444455666666666666533 44333455666666666666554 4433344566666666666


Q ss_pred             ccC
Q 026255          129 VSD  131 (241)
Q Consensus       129 l~~  131 (241)
                      +..
T Consensus       373 lp~  375 (394)
T 4fs7_A          373 LPK  375 (394)
T ss_dssp             EEG
T ss_pred             ECC
Confidence            543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.34  E-value=0.018  Score=49.33  Aligned_cols=82  Identities=13%  Similarity=0.173  Sum_probs=50.1

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ...|+.+.+. +.+..+....|.++.+|+.+++..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++.+|+.++
T Consensus       287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            4556666664 3455555556677777777777654 44344456667777777777544 4433345667777777777


Q ss_pred             ccCCc
Q 026255          129 VSDNY  133 (241)
Q Consensus       129 l~~N~  133 (241)
                      +.++.
T Consensus       364 ~~~~~  368 (394)
T 4gt6_A          364 YSGSR  368 (394)
T ss_dssp             ESSCH
T ss_pred             ECCce
Confidence            76653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.31  E-value=0.0017  Score=50.65  Aligned_cols=84  Identities=13%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             CcCccEEEccCC-CCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCCch---
Q 026255           49 PDILTGIILSNN-RFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQ---  116 (241)
Q Consensus        49 ~~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~---  116 (241)
                      -+.|+.|+|++| .|...    +-..+..-+.|+.|+|++|.+...    +...+..-..|+.|+|++|.|+..--.   
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            346888888885 77431    334456667888888888888632    222333446788888888888742222   


Q ss_pred             -hHhhccccceEeccCC
Q 026255          117 -QLVELTFLEFFNVSDN  132 (241)
Q Consensus       117 -~l~~l~~L~~L~l~~N  132 (241)
                       .+..-..|+.|++++|
T Consensus       120 ~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCceeEEECCCC
Confidence             2333456777777754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.13  E-value=0.008  Score=51.13  Aligned_cols=60  Identities=13%  Similarity=0.114  Sum_probs=25.0

Q ss_pred             hhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           68 ASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        68 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ..|..+.+|+.+.+.++.++..-...|.++.+|+.+++..+ ++..-..+|.++.+|+.+.
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            33444444444444444444233334444444444444332 2212223344444444443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.96  E-value=0.0034  Score=48.08  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=56.8

Q ss_pred             CCCceEecccCcCCCCCccccCCCCccceeeccCCc-CCCCCchhHhhc----cccceEeccCCc-ccCC-CCCCCccCc
Q 026255           74 KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNK-FSGRIPQQLVEL----TFLEFFNVSDNY-LTGP-IPQGKQFAT  146 (241)
Q Consensus        74 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l----~~L~~L~l~~N~-l~g~-~p~~~~~~~  146 (241)
                      ..|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|++|+++++. ++.. +.....++.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            469999999999887666678899999999999996 663322334442    479999999984 6521 000123456


Q ss_pred             cCcccccCCC
Q 026255          147 FDNTSFDANS  156 (241)
Q Consensus       147 l~~~~~~~n~  156 (241)
                      +..+++.+-+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.69  E-value=0.0064  Score=47.40  Aligned_cols=86  Identities=15%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcC---CCC----
Q 026255           49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKF---SGR----  113 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l---~~~----  113 (241)
                      -+.|+.|+|++|.|...    +...+..-+.|+.|+|++|.|...    +-..+..-..|+.|+|++|..   ...    
T Consensus        69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~  148 (197)
T 1pgv_A           69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  148 (197)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence            45799999999999642    334455568899999999999743    233455567799999987643   321    


Q ss_pred             CchhHhhccccceEeccCCcc
Q 026255          114 IPQQLVELTFLEFFNVSDNYL  134 (241)
Q Consensus       114 ~p~~l~~l~~L~~L~l~~N~l  134 (241)
                      +.+.+..-++|+.|+++.|..
T Consensus       149 ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          149 MMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCcCeEeccCCCc
Confidence            233455567899999887754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.32  E-value=0.016  Score=49.70  Aligned_cols=81  Identities=12%  Similarity=0.144  Sum_probs=55.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +.+|+.++|..+ ++.+-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++.++...   -..+..+..|+.+.
T Consensus       310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~  384 (394)
T 4gt6_A          310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLP  384 (394)
T ss_dssp             CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----
T ss_pred             CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEE
Confidence            678999999865 66666788999999999999765 66455678999999999999987643   13455667788777


Q ss_pred             ccCCcc
Q 026255          129 VSDNYL  134 (241)
Q Consensus       129 l~~N~l  134 (241)
                      +..|.+
T Consensus       385 i~~~~~  390 (394)
T 4gt6_A          385 VAPGSI  390 (394)
T ss_dssp             ------
T ss_pred             eCCCCE
Confidence            766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.05  E-value=0.019  Score=49.16  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=58.5

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +.+|+.+++..+ ++.+-...|.++.+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++ .+...|.++++|+.+
T Consensus       319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            678999999754 77766788999999999999877 76566678999999999999765 33 344567777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.12  E-value=0.084  Score=44.68  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=44.5

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEecc
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS  130 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~  130 (241)
                      .|+.+.+..+ +..+-...|.++.+|+.+.+..+ ++......|.++.+|+.+.+.++.++..-...|.++.+|+.+++.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3444444433 33333444555556666665433 332333456666777777777766664444566677777777765


Q ss_pred             CC
Q 026255          131 DN  132 (241)
Q Consensus       131 ~N  132 (241)
                      .+
T Consensus       319 ~~  320 (379)
T 4h09_A          319 TA  320 (379)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=80.42  E-value=0.67  Score=26.51  Aligned_cols=22  Identities=32%  Similarity=0.632  Sum_probs=11.7

Q ss_pred             ceeEeehhhhhhhHHHHHHHHH
Q 026255          193 WKIILTGYAGGLVAGLVLGFNF  214 (241)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~  214 (241)
                      ...++.|+++|+++.+++++++
T Consensus         9 ~~aIA~gVVgGv~~v~ii~~~~   30 (44)
T 2l2t_A            9 TPLIAAGVIGGLFILVIVGLTF   30 (44)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEeehHHHHHHHHHHHHH
Confidence            3445556666665555554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-08
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	5e-07
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	1e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	4e-04

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 76.7 bits (187), Expect = 4e-17
 Identities = 34/84 (40%), Positives = 41/84 (48%)

Query: 82  HNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQG 141
              N        +G   NL  LDL NN+  G +PQ L +L FL   NVS N L G IPQG
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287

Query: 142 KQFATFDNTSFDANSGLCGRPLSK 165
                FD +++  N  LCG PL  
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 69.4 bits (168), Expect = 1e-14
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 115
           L NNR    +P  ++ LK L  LN+  NNL G IP   GNL   +    +NNK     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 76  LQVLNLHNNNLQG--HIPSCLGNLTNLESLDLSNN-KFSGRIPQQLVELTFLEFFNVSDN 132
           +  L+L   NL     IPS L NL  L  L +       G IP  + +LT L +  ++  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 133 Y 133
            
Sbjct: 112 N 112

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.8 bits (86), Expect = 8e-04
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 3/112 (2%)

Query: 52  LTGIILSNNRF--DEAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNN 108
           +  + LS         IP+S++NL  L  L +    NL G IP  +  LT L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 109 KFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCG 160
             SG IP  L ++  L   + S N L+G +P                + + G
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 3/44 (6%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ--GHIPSC 93
           L  + +S N     IP    NL+   V    NN       +P+C
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.9 bits (180), Expect = 6e-16
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 27  LGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNL 86
           L          ++   ++       LT + L  N   +  P  +S+L  LQ L   NN +
Sbjct: 284 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKV 341

Query: 87  QGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDN 132
                S L NLTN+  L   +N+ S   P  L  LT +    ++D 
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 72  NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD 131
           NLK L  L L+ NN+    P  + +LT L+ L  +NNK S      L  LT + + +   
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 132 NYLTGPIP 139
           N ++   P
Sbjct: 361 NQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 6/77 (7%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L      + +  S ++L  +  L      ++      +  L NL  ++ SNN+ +   P 
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP- 83

Query: 117 QLVELTFLEFFNVSDNY 133
            L  LT L    +++N 
Sbjct: 84  -LKNLTKLVDILMNNNQ 99

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 55  IILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI 114
           +I +NN+  +  P  I     L  L+L+ N L+      L +LTNL  LDL+NN+ S   
Sbjct: 202 LIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 257

Query: 115 PQQLVELTFLEFFNVSDNYLTGPIP 139
           P  L  LT L    +  N ++   P
Sbjct: 258 P--LSGLTKLTELKLGANQISNISP 280

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 8e-06
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 24/111 (21%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  + L+ N+  +    ++++L  L  L+L NN +    P  L  LT L  L L  N+ S
Sbjct: 221 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 276

Query: 112 GRIP--------------------QQLVELTFLEFFNVSDNYLTGPIPQGK 142
              P                      +  L  L +  +  N ++   P   
Sbjct: 277 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSS 327

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 71  SNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130
           + L       L   N+   +     +L  + +L              +  L  L   N S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 131 DNYLTGPIP 139
           +N LT   P
Sbjct: 75  NNQLTDITP 83

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (145), Expect = 2e-11
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 5/75 (6%)

Query: 52  LTGIILSNNRF-DEAIPASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLS 106
           +  + +      D      +  L+  QV+ L +  L       I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 107 NNKFSGRIPQQLVEL 121
           +N+        +++ 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (135), Expect = 4e-10
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFD----EAIPASISNLKGLQVLNLHNNN 85
            +       +       +   +L  + L++         ++ A++     L+ L+L NN 
Sbjct: 349 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 408

Query: 86  LQGHIPSCLG-----NLTNLESLDLSNNKFSGRIPQQLVEL 121
           L       L          LE L L +  +S  +  +L  L
Sbjct: 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (132), Expect = 1e-09
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 67  PASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-- 120
                    L+VL L + ++       + + L    +L  LDLSNN        QLVE  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 121 ---LTFLEFFNVSDNYLTGPIPQ 140
                 LE   + D Y +  +  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 2e-05
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 52  LTGIILSNNRFDE----AIPASISNLKGLQVLNLHNNNLQGHIPSCLG-----NLTNLES 102
              + L +    E     I +++     L  LNL +N L      C+          ++ 
Sbjct: 29  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 88

Query: 103 LDLSNNKF 110
           L L N   
Sbjct: 89  LSLQNCCL 96

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 5e-11
 Identities = 24/117 (20%), Positives = 34/117 (29%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           +P     + L NN+  E       NLK L  L L NN +    P     L  LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS 164
           N+      +    L  L         +   +  G           +          +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.7 bits (117), Expect = 9e-08
 Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 3/109 (2%)

Query: 59  NNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 118
             +       +   +K L  + + + N+   IP   G   +L  L L  NK +      L
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASL 191

Query: 119 VELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGC 167
             L  L    +S N ++                   N+ L   P     
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L+ I +++      IP  +     L  L+L  N +     + L  L NL  L LS N  S
Sbjct: 152 LSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANS 156
                 L     L   ++++N L                    N+
Sbjct: 209 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 29/117 (24%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHI----------------- 90
           +P  LT + L  N+  +   AS+  L  L  L L  N++                     
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228

Query: 91  ------PSCLGNLTNLESLDLSNNKFSG------RIPQQLVELTFLEFFNVSDNYLT 135
                 P  L +   ++ + L NN  S         P    +       ++  N + 
Sbjct: 229 NKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 3e-10
 Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
            +      S   + +   +P  L  + +SNN+  E +PA    L   + L    N+L   
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-E 318

Query: 90  IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128
           +P    NL   + L +  N      P     +  L   +
Sbjct: 319 VPELPQNL---KQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 5e-08
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 8/109 (7%)

Query: 28  GTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQ 87
              +   ++               L   +   N     I +       L+ LN+ NN L 
Sbjct: 238 DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI 297

Query: 88  GHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136
             +P+       LE L  S N  +  +P+    L  L   +V  N L  
Sbjct: 298 -ELPALPP---RLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 74  KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNY 133
           +    L L+N  L   +P    +L   ESL  S N  +  +P+       L+   V +N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPE---LPQSLKSLLVDNNN 89

Query: 134 LTG 136
           L  
Sbjct: 90  LKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 37  NSKGRMMTYNKIPDI----LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS 92
           N + R M  +++ D        + L+N      +P    +L   + L    N+L   +P 
Sbjct: 21  NGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPELPPHL---ESLVASCNSLT-ELPE 75

Query: 93  CLGNLTNLESLDLSNNKFSGRIPQ 116
              +L +L   + +    S   P 
Sbjct: 76  LPQSLKSLLVDNNNLKALSDLPPL 99

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
           LT +   +N+  +  P  +++L  L  ++L NN +    P  L N +NL  + L+N
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 70  ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV 129
           ++NL  L  L   +N +    P  L +L NL  + L NN+ S   P  L   + L    +
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

Query: 130 SD 131
           ++
Sbjct: 225 TN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 55  IILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           I    +   + +  + ++L G+  L+     +       +  L NL  L+L +N+ 
Sbjct: 24  IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 72  NLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSD 131
            L     +    +N+   +     +L  + +L       +    + +  L  L    + D
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 132 NYLTGPIPQGK 142
           N +T   P   
Sbjct: 73  NQITDLAPLKN 83

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 69  SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128
            +S +     +N    NL   +P  L    +   L LS N         L+  T L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 129 VSDNY 133
           +    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-07
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 58  SNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
           +NN   E     ++ L+ L  L L  N+L   IP        L    L  N +
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKF 110
                    +P  +   K   +L+L  N L     + L   T L  L+L   + 
Sbjct: 17  CDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 59  NNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQL 118
            N      P  ++    L+ L+L NNNL       L  L NL++L L  N     IP+  
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 119 VELTFLEFFNVSDN 132
                L F  +  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 7e-08
 Identities = 11/78 (14%), Positives = 21/78 (26%)

Query: 32  YSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP 91
           +      +           +    +  NN  +E          G  +L++    +     
Sbjct: 159 WLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 218

Query: 92  SCLGNLTNLESLDLSNNK 109
             L NL  L +    N K
Sbjct: 219 YGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 7e-05
 Identities = 13/101 (12%), Positives = 28/101 (27%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH 89
                         ++  +      + L+ N   E    + +  +  ++    NNNL+  
Sbjct: 133 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEEL 192

Query: 90  IPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVS 130
                   +    LD+S  +        L  L  L   +  
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 53  TGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 112
              +   ++  E IP+ +   +    L      L+           +LE +++S N    
Sbjct: 11  RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 113 RIPQQ 117
            I   
Sbjct: 68  VIEAD 72

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 3/64 (4%)

Query: 77  QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTG 136
           +V     + +   IPS L    N   L     K              LE   +S N +  
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 137 PIPQ 140
            I  
Sbjct: 68  VIEA 71

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 5e-07
 Identities = 20/117 (17%), Positives = 35/117 (29%), Gaps = 2/117 (1%)

Query: 49  PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPS-CLGNLTNLESLDLSN 107
           P   +G+  + +   +     +   + L  L + N     H+    L  L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLS 164
           +      P        L   N+S N L     +  Q  +        N   C   L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L+    ++A  A  +N    + L+L    +   I +    L   +++D S+N+       
Sbjct: 3   LTAELIEQA--AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 117 QLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN 149
               L  L+   V++N +        Q      
Sbjct: 60  P--LLRRLKTLLVNNNRICRIGEGLDQALPDLT 90

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 1e-06
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 26/103 (25%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNL---------------- 100
           L++      +   +  L  +  L+L +N L+   P+ L  L  L                
Sbjct: 5   LAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDGV 61

Query: 101 ------ESLDLSNNKF-SGRIPQQLVELTFLEFFNVSDNYLTG 136
                 + L L NN+       Q LV    L   N+  N L  
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 77  QVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP 115
           +VL+L + +L   +   L  L  +  LDLS+N+     P
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP 37

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 77  QVLNLHNNNLQG-HIPSCLGNLTNLESLDLSNNKFSGR--IPQQLVEL 121
           Q L L NN LQ       L +   L  L+L  N       I ++L E+
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 18/92 (19%), Positives = 30/92 (32%)

Query: 42  MMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLE 101
                +    L  + L +N        +  +L  L  L LH N +          L +L+
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 102 SLDLSNNKFSGRIPQQLVELTFLEFFNVSDNY 133
            L L  N+ +   P    +L  L    +  N 
Sbjct: 181 RLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 4e-05
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 52  LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFS 111
           L  ++L  NR     P +  +L  L  L L  NNL       L  L  L+ L L++N + 
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

Query: 112 GRIPQQLVELTFLEFFNVSDNYLTGPIP---QGKQFATFDNTSF 152
                + +   +L+ F  S + +   +P    G+          
Sbjct: 239 CDCRARPL-WAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 8e-04
 Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 30  YDYSMTMNSKGRMMTYNKIPDI-LTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG 88
               +  N+   + T    P   L  + L++N +      +      LQ     ++ +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPC 262

Query: 89  HIPSCLGNLTNLESLDLSNNKFSG 112
            +P     L   +   L+ N   G
Sbjct: 263 SLPQ---RLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 65  AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLE 101
           A+P  I      Q + LH N +     +      NL 
Sbjct: 25  AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLT 59

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 25/117 (21%), Positives = 33/117 (28%), Gaps = 25/117 (21%)

Query: 48  IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHI----------------- 90
           IP     I L  NR      AS    + L +L LH+N L                     
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 91  --------PSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP 139
                   P+    L  L +L L         P     L  L++  + DN L     
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 7/51 (13%), Positives = 13/51 (25%), Gaps = 3/51 (5%)

Query: 78  VLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN 128
             +     LQ  +P  +      + + L  N+ S            L    
Sbjct: 15  TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 10/85 (11%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ 116
           L+       +   + +  G+       + +   +     +   ++ +DLSN+        
Sbjct: 7   LTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLH 64

Query: 117 QLVE-LTFLEFFNVSDNYLTGPIPQ 140
            ++   + L+  ++    L+ PI  
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVN 89

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 3e-06
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 3/100 (3%)

Query: 50  DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGH--IPSCLGNLTNLESLDLSN 107
           +I   +   ++     +     N+  L  LNL NN L     + S +    NL+ L+LS 
Sbjct: 42  NIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 100

Query: 108 NKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATF 147
           N+         ++   LE   +  N L+        + + 
Sbjct: 101 NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA 140

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-06
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 15/97 (15%)

Query: 32  YSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIP 91
                N +   +    +       ++                 GLQ L L  N ++    
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSK--------LENIGLQTLRLQYNEIELDAV 290

Query: 92  SCL-----GNLTNLESLDLSNNKFS--GRIPQQLVEL 121
             L       + +L  L+L+ N+FS    +  ++ E+
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.7 bits (101), Expect = 9e-06
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 74  KGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGR----IPQQLVELTFLEFFNV 129
           K L++  +   + +  + + L    +++ + LS N         + + +     LE    
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 130 SDNYLTGPIPQGKQFATFDNTSFDANSGLC 159
           SD +      +  +       +      L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 6/51 (11%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 64  EAIPASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSNNKF 110
           +++ A +     ++ + L  N +       +   + +  +LE  + S+   
Sbjct: 21  KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 8e-04
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 80  NLHNNNLQGHIPSCLGN------LTNLESLDLSNNKFSGRIPQQLVE-----LTFLEFFN 128
            L++  L     + + +         L++L L  N+      + L       +  L F  
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308

Query: 129 VSDNYLT 135
           ++ N  +
Sbjct: 309 LNGNRFS 315

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 26/142 (18%), Positives = 49/142 (34%), Gaps = 9/142 (6%)

Query: 29  TYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQG 88
                      G      +    +  + L  N+  E        L  L+ LNL++N +  
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 89  HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIP---QGKQFA 145
            +P    +L +L SL+L++N F+           +L   +++        P   +  Q  
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRDVQIK 175

Query: 146 TFDNTSFDANSGLCGRPLSKGC 167
              ++ F      C    S+GC
Sbjct: 176 DLPHSEFK-----CSSENSEGC 192

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 69  SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSN 107
            ++ L  LQ L L  N++       L  L NL+ L+L +
Sbjct: 173 PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 57  LSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 112
           L      +A+  + + L  +  +  +N++++      +  L N+  L L+ NK + 
Sbjct: 31  LKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTD 82

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 69  SISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESL 103
            ++NL  L+ L++ +N +     S L  LTNLESL
Sbjct: 167 PLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 55  IILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG 112
            +L      + +  S ++L  +  L      ++      +  L NL  ++ SNN+ + 
Sbjct: 23  TVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 82  HNNNLQGHIPSCLGNLTNLESLDLSNNKFSG-RIPQQLVELTFL 124
            +N +    P  L NLT LE LD+S+NK S   +  +L  L  L
Sbjct: 158 SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 64  EAIPASISNLKGLQVLNLHNNNLQGHIP------SCLGNLTNLESLDLSNNKFSGRIPQQ 117
           +AI       K +         L G IP      + L  L   + L LS N    +I   
Sbjct: 9   DAI-RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-S 65

Query: 118 LVELTFLEFFNVSDNY 133
           L  +  L   ++  N 
Sbjct: 66  LSGMENLRILSLGRNL 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.72
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.44
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.4
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.38
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.24
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.2
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.16
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.15
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.0
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.01
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.93
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.68
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.66
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.47

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.72  E-value=4.3e-18  Score=141.75  Aligned_cols=73  Identities=47%  Similarity=0.807  Sum_probs=66.4

Q ss_pred             cCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCCCCCCCCCCCCCC
Q 026255           94 LGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDANSGLCGRPLSKGC  167 (241)
Q Consensus        94 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~c  167 (241)
                      ++.+++|+.|++++|+++|.+|+.+..+++|++|+|++|+++|.+|....+..+..+++.+|+.+||.|+. .|
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            45567889999999999999999999999999999999999999999888899999999999999998863 45

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.3e-18  Score=131.91  Aligned_cols=129  Identities=20%  Similarity=0.322  Sum_probs=110.6

Q ss_pred             EEEeecccccccCccCcCccEEEccCCCCCc-cchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCC
Q 026255           34 MTMNSKGRMMTYNKIPDILTGIILSNNRFDE-AIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSG  112 (241)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  112 (241)
                      ++|+.+++...+..+++++++|+|++|.|++ ..+..|..+++|+.|++++|.+....+..+..+++|++|++++|++++
T Consensus        13 v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~   92 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             EEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc
Confidence            4555556655556678899999999999986 446678999999999999999998899999999999999999999997


Q ss_pred             CCchhHhhccccceEeccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          113 RIPQQLVELTFLEFFNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       113 ~~p~~l~~l~~L~~L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      ..|..|.++++|++|+|++|++++..|.. ..+..+..+++.+|++.|.++
T Consensus        93 l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            77788999999999999999999766654 457788899999999999764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=9.6e-17  Score=130.77  Aligned_cols=113  Identities=27%  Similarity=0.279  Sum_probs=90.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+.+..+..+..+.+++.|++++|.++...+..+..+++|+.+++++|++++..+..|..+++|++|+
T Consensus        99 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~  178 (266)
T d1p9ag_          99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL  178 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceee
Confidence            45566666666666666666666677777777777777766666677889999999999999977778889999999999


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      |++|+++ .+|.. ..+..+..+++.||||.|+|.
T Consensus       179 Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             cccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            9999999 66654 567788999999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=6e-16  Score=120.06  Aligned_cols=90  Identities=21%  Similarity=0.263  Sum_probs=83.4

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      -+++|+.|+|++|.+.+..+..+..+++|++|+|++|+++...|..|.++++|++|+|++|+|++..|+.|..+++|+++
T Consensus        52 ~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l  131 (192)
T d1w8aa_          52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             CCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccc
Confidence            37789999999999999999999999999999999999998888889999999999999999997778889999999999


Q ss_pred             eccCCcccCC
Q 026255          128 NVSDNYLTGP  137 (241)
Q Consensus       128 ~l~~N~l~g~  137 (241)
                      ++++|.+...
T Consensus       132 ~L~~N~~~~~  141 (192)
T d1w8aa_         132 NLASNPFNCN  141 (192)
T ss_dssp             ECTTCCBCCS
T ss_pred             cccccccccc
Confidence            9999998754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-16  Score=129.69  Aligned_cols=117  Identities=18%  Similarity=0.224  Sum_probs=102.7

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+.+|+.+++++|.++++.+..|..+++|+.|++++|++++..+..|.++++|+.+++++|++++..|..|..+++|++
T Consensus       126 ~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~  205 (284)
T d1ozna_         126 RGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (284)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             chhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence            44678999999999999877888999999999999999999888888999999999999999999888999999999999


Q ss_pred             EeccCCcccCCCCCC-CccCccCcccccCCCCCCCCCC
Q 026255          127 FNVSDNYLTGPIPQG-KQFATFDNTSFDANSGLCGRPL  163 (241)
Q Consensus       127 L~l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~lc~~~~  163 (241)
                      |++++|.+.+..|.. .....+..+++++|++.|+|+.
T Consensus       206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~  243 (284)
T d1ozna_         206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (284)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             ccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence            999999998765543 4567788899999999998753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.9e-14  Score=105.67  Aligned_cols=111  Identities=17%  Similarity=0.098  Sum_probs=81.9

Q ss_pred             CccEEEccCCCCCccchhhhcCCCCCceEecccC-cCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEec
Q 026255           51 ILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNV  129 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l  129 (241)
                      ..+.++.+++++.. .|..+..+++|++|++++| .++...+..|.++++|+.|++++|+|+...|..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence            34567777777765 5666777888888888765 477556667888888888888888888666777888888888888


Q ss_pred             cCCcccCCCCCCCccCccCcccccCCCCCCCCC
Q 026255          130 SDNYLTGPIPQGKQFATFDNTSFDANSGLCGRP  162 (241)
Q Consensus       130 ~~N~l~g~~p~~~~~~~l~~~~~~~n~~lc~~~  162 (241)
                      ++|+++...+.......+..+++++||+.|+|.
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             cCCCCcccChhhhccccccccccCCCcccCCch
Confidence            888888444444444567778888888888763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=7.2e-14  Score=100.72  Aligned_cols=83  Identities=31%  Similarity=0.473  Sum_probs=38.9

Q ss_pred             cCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCC-chhHhhccccceEe
Q 026255           50 DILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRI-PQQLVELTFLEFFN  128 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~  128 (241)
                      .+|++|++++|.|++ +|+.++.+++|+.|++++|.++ .+|. ++.+++|+.+++++|+++... ...+..+++|+.++
T Consensus        20 ~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~   96 (124)
T d1dcea3          20 LLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN   96 (124)
T ss_dssp             TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCccCc-chhhhhhhhccccccccccccc-ccCc-cccccccCeEECCCCccCCCCCchhhcCCCCCCEEE
Confidence            345555555555543 3334445555555555555554 2332 445555555555555554211 12344445555555


Q ss_pred             ccCCccc
Q 026255          129 VSDNYLT  135 (241)
Q Consensus       129 l~~N~l~  135 (241)
                      +++|+++
T Consensus        97 l~~N~i~  103 (124)
T d1dcea3          97 LQGNSLC  103 (124)
T ss_dssp             CTTSGGG
T ss_pred             CCCCcCC
Confidence            5555544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2.3e-13  Score=97.96  Aligned_cols=101  Identities=20%  Similarity=0.232  Sum_probs=85.1

Q ss_pred             cEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCC
Q 026255           53 TGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDN  132 (241)
Q Consensus        53 ~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N  132 (241)
                      ++|+|++|+++. ++ .+..+++|++|++++|.++ .+|+.++.+++|+.|++++|+++ .+| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            579999999986 44 4889999999999999999 78888999999999999999999 555 4889999999999999


Q ss_pred             cccCCCC--CCCccCccCcccccCCCCC
Q 026255          133 YLTGPIP--QGKQFATFDNTSFDANSGL  158 (241)
Q Consensus       133 ~l~g~~p--~~~~~~~l~~~~~~~n~~l  158 (241)
                      +++....  ....++.+..+++.+|+..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            9984322  2245667888999999753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=3.1e-13  Score=111.40  Aligned_cols=112  Identities=24%  Similarity=0.379  Sum_probs=97.8

Q ss_pred             CccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccc
Q 026255           46 NKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLE  125 (241)
Q Consensus        46 ~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  125 (241)
                      ...+++++.|++++|.+.+..+..+..++.++.|++++|.+++..+..+..+++|++|+|++|+|+ .+|..+..+++|+
T Consensus       167 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~  245 (305)
T d1xkua_         167 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ  245 (305)
T ss_dssp             SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred             cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCC
Confidence            345788999999999999999999999999999999999999888888999999999999999998 7788999999999


Q ss_pred             eEeccCCcccCCCCCC--------CccCccCcccccCCCCCC
Q 026255          126 FFNVSDNYLTGPIPQG--------KQFATFDNTSFDANSGLC  159 (241)
Q Consensus       126 ~L~l~~N~l~g~~p~~--------~~~~~l~~~~~~~n~~lc  159 (241)
                      +|++++|+++. ++..        ....++..++++||++-+
T Consensus       246 ~L~Ls~N~i~~-i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         246 VVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             EEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             EEECCCCccCc-cChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            99999999984 4432        234567788899998765

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.42  E-value=5.9e-14  Score=116.27  Aligned_cols=92  Identities=29%  Similarity=0.492  Sum_probs=60.1

Q ss_pred             CcCccEEEccC-CCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSN-NRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~-n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|++|+|++ |++.|.+|..|+++++|++|+|++|++.+..+..+..+..|+.++++.|.+.+.+|..+..++.++.+
T Consensus        75 L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccccee
Confidence            55666666664 56666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             eccCCcccCCCCC
Q 026255          128 NVSDNYLTGPIPQ  140 (241)
Q Consensus       128 ~l~~N~l~g~~p~  140 (241)
                      ++++|.+.|.+|.
T Consensus       155 ~l~~n~l~~~ip~  167 (313)
T d1ogqa_         155 TFDGNRISGAIPD  167 (313)
T ss_dssp             ECCSSCCEEECCG
T ss_pred             ecccccccccccc
Confidence            6666666666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.9e-13  Score=109.76  Aligned_cols=89  Identities=26%  Similarity=0.300  Sum_probs=82.0

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+.++++|++++|.+....+..+..+++++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~  199 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF  199 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSE
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCE
Confidence            44678999999999999988888899999999999999999888888999999999999999999 88988889999999


Q ss_pred             EeccCCcccC
Q 026255          127 FNVSDNYLTG  136 (241)
Q Consensus       127 L~l~~N~l~g  136 (241)
                      |++++|++..
T Consensus       200 L~L~~Np~~C  209 (266)
T d1p9ag_         200 AFLHGNPWLC  209 (266)
T ss_dssp             EECCSCCBCC
T ss_pred             EEecCCCCCC
Confidence            9999999873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.8e-13  Score=109.30  Aligned_cols=110  Identities=23%  Similarity=0.217  Sum_probs=90.9

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+....+..+..+.+|+.+++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|+.++
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~  183 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhh
Confidence            57899999999998887777888888999999999999866677788888999999999999877777888899999999


Q ss_pred             ccCCcccCCCCCC-CccCccCcccccCCCCC
Q 026255          129 VSDNYLTGPIPQG-KQFATFDNTSFDANSGL  158 (241)
Q Consensus       129 l~~N~l~g~~p~~-~~~~~l~~~~~~~n~~l  158 (241)
                      +++|.+++..|.. ..+..+..+++++|...
T Consensus       184 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hhhccccccChhHhhhhhhcccccccccccc
Confidence            9999998776655 44567777888777643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.2e-13  Score=101.75  Aligned_cols=105  Identities=13%  Similarity=0.094  Sum_probs=71.8

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +..+++|+|++|+|+. ++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            3457778888888866 4555567777888888888877 443 367778888888888888744444556677888888


Q ss_pred             ccCCcccCCCCC---CCccCccCcccccCCCC
Q 026255          129 VSDNYLTGPIPQ---GKQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~~p~---~~~~~~l~~~~~~~n~~  157 (241)
                      +++|+++. +++   ...++.+..+++.+|+.
T Consensus        94 L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          94 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGG
T ss_pred             eccccccc-cccccccccccccchhhcCCCcc
Confidence            88887763 222   23456666777777764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.5e-13  Score=99.99  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=89.2

Q ss_pred             CCCCCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccC
Q 026255            5 NTSELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNN   84 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N   84 (241)
                      .+.|+..|.+++++.|+|+...                 .....+++|+.|+|++|.|+..  +.+..+++|+.|++++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~-----------------~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N   73 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIE-----------------NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN   73 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-----------------CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSS
T ss_pred             hccCcCcCcEEECCCCCCCccC-----------------ccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccc
Confidence            3456667788889888888432                 1113367899999999999874  34889999999999999


Q ss_pred             cCCCCCccccCCCCccceeeccCCcCCCCCc--hhHhhccccceEeccCCccc
Q 026255           85 NLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--QQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        85 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~l~~N~l~  135 (241)
                      .++...+..+..+++|+.|++++|+++ .++  ..+..+++|+++++++|+++
T Consensus        74 ~i~~l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          74 RICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccCCCccccccccccccceecccccc-ccccccccccccccchhhcCCCccc
Confidence            999655555678999999999999998 444  35788999999999999997

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.8e-12  Score=94.52  Aligned_cols=86  Identities=21%  Similarity=0.225  Sum_probs=75.1

Q ss_pred             CcCccEEEccCC-CCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceE
Q 026255           49 PDILTGIILSNN-RFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFF  127 (241)
Q Consensus        49 ~~~L~~L~L~~n-~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  127 (241)
                      +++|++|++++| .++.+.+..|.++++|+.|++++|+++...|..|..+++|++|+|++|+|+ .+|.......+|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhcccccccc
Confidence            578999999876 598888888999999999999999999777888999999999999999999 555544445579999


Q ss_pred             eccCCccc
Q 026255          128 NVSDNYLT  135 (241)
Q Consensus       128 ~l~~N~l~  135 (241)
                      ++++|++.
T Consensus       109 ~L~~Np~~  116 (156)
T d2ifga3         109 VLSGNPLH  116 (156)
T ss_dssp             ECCSSCCC
T ss_pred             ccCCCccc
Confidence            99999985

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=3.6e-11  Score=93.01  Aligned_cols=100  Identities=33%  Similarity=0.472  Sum_probs=51.6

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|++++..|  ++.+++|++|++++|.+. .++. +..++.|+.|++++|.+.. . ..+..+++|+.++
T Consensus        61 l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred             CCCcCcCccccccccCccc--ccCCcccccccccccccc-cccc-ccccccccccccccccccc-c-cccchhhhhHHhh
Confidence            4556666666666655322  555666666666666555 3332 4555555666655555542 2 2244555555555


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n  155 (241)
                      +++|.+. .++.......+..+.+.+|
T Consensus       135 l~~n~l~-~~~~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2         135 LSSNTIS-DISALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             CCSSCCC-CCGGGTTCTTCSEEECCSS
T ss_pred             hhhhhhc-ccccccccccccccccccc
Confidence            5555554 2333333344444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=6.5e-11  Score=92.34  Aligned_cols=100  Identities=30%  Similarity=0.403  Sum_probs=44.4

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|++++ +| .+..+++|+.|++++|.+. .++ .+..++.++.++++.|.+++  +..+..+++|+.++
T Consensus        89 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2          89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             Cccccccccccccccc-cc-ccccccccccccccccccc-ccc-cccccccccccccccccccc--cccccccccccccc
Confidence            3444445555554443 22 2444444555555444443 222 23444444455555444441  12234445555555


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n  155 (241)
                      +++|++++ ++....++.+..+++++|
T Consensus       163 l~~n~l~~-i~~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         163 LEDNQISD-IVPLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             CCSSCCCC-CGGGTTCTTCCEEECCSS
T ss_pred             cccccccc-cccccCCCCCCEEECCCC
Confidence            55555543 222333444444555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=3e-11  Score=101.61  Aligned_cols=81  Identities=28%  Similarity=0.408  Sum_probs=41.5

Q ss_pred             hcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCc
Q 026255           70 ISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDN  149 (241)
Q Consensus        70 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~  149 (241)
                      +..+++++.|++++|++++. + .+..+++|+.|++++|+++ .++ .+..+++|++|++++|++++..| ...++.+..
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~  377 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQ  377 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSE
T ss_pred             cchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence            34445555555555555532 2 1455555666666666555 233 35555566666666665554332 333444555


Q ss_pred             ccccCC
Q 026255          150 TSFDAN  155 (241)
Q Consensus       150 ~~~~~n  155 (241)
                      +++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            554443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=1.1e-10  Score=91.83  Aligned_cols=146  Identities=21%  Similarity=0.259  Sum_probs=61.3

Q ss_pred             CCCCCCCccccccccCCCCccccc-ccceeEEEEEeeccccc---ccCccCcCccEEEccCCCCCccchhhhcCCCCCce
Q 026255            3 IFNTSELRYLQDVLFPYGQVSSNV-LGTYDYSMTMNSKGRMM---TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQV   78 (241)
Q Consensus         3 ~~~~~~l~~L~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~   78 (241)
                      +..+.+|++|+.++++.|+++... +........+.......   ....-+++|+.++++++.+.+..+  +...+.++.
T Consensus        56 l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~  133 (227)
T d1h6ua2          56 IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV  133 (227)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred             chhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccccch--hccccchhh
Confidence            344567777777888888776532 22221111111111111   111124556666666665543211  222333333


Q ss_pred             EecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCcccccCC
Q 026255           79 LNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFDAN  155 (241)
Q Consensus        79 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~~n  155 (241)
                      +.++++.+....  .+..+++|+.|++++|.++. .+ .+..+++|+.|++++|++++ ++....++.+..+++++|
T Consensus       134 l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         134 LYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNN  205 (227)
T ss_dssp             EECCSSCCCCCG--GGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTS
T ss_pred             hhchhhhhchhh--hhcccccccccccccccccc-ch-hhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCC
Confidence            333333333111  12334444444444444442 11 14444444555554444442 222333344444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=6.8e-11  Score=91.41  Aligned_cols=101  Identities=34%  Similarity=0.461  Sum_probs=76.7

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|++++|.+... + .+..++.|+.|++++|.+.. ++ .+..+++|+.|++++|++. .++ .+..+++|+.|+
T Consensus        83 l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~  156 (199)
T d2omxa2          83 LTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITD-ID-PLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLN  156 (199)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEE
T ss_pred             Ccccccccccccccccc-c-cccccccccccccccccccc-cc-ccchhhhhHHhhhhhhhhc-ccc-cccccccccccc
Confidence            66788888888888663 3 37788888888888888773 32 3678888888888888887 444 477788888888


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANS  156 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~  156 (241)
                      +.+|++++ ++....++.+..+++++|.
T Consensus       157 l~~n~l~~-l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         157 FSSNQVTD-LKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             CCSSCCCC-CGGGTTCTTCCEEECCSSC
T ss_pred             cccccccC-CccccCCCCCCEEECCCCC
Confidence            88888874 4444566777888887775

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.16  E-value=1.2e-10  Score=95.55  Aligned_cols=105  Identities=22%  Similarity=0.228  Sum_probs=89.5

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|+.+++++|.+.. +|..  .+++|+.|++++|..++..+..+..++.++.|++++|.+++..+..+..+++|++|+
T Consensus       149 l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeee
Confidence            4678899999999876 4443  367899999999999988899999999999999999999987788899999999999


Q ss_pred             ccCCcccCCCCC-CCccCccCcccccCCCC
Q 026255          129 VSDNYLTGPIPQ-GKQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~~p~-~~~~~~l~~~~~~~n~~  157 (241)
                      +++|.++ .+|. ...++.+..+++++|..
T Consensus       226 L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         226 LNNNKLV-KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             CCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             ccccccc-ccccccccccCCCEEECCCCcc
Confidence            9999998 5554 35678889999999863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=5.5e-11  Score=99.95  Aligned_cols=80  Identities=30%  Similarity=0.373  Sum_probs=69.9

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+.+++.|++++|++++..  .+..+++|++|++++|+++ .++ .++.+++|++|++++|++++..|  +.++++|+.
T Consensus       304 ~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         304 SNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             GGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             chhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            34678999999999998854  3789999999999999998 455 58999999999999999995543  889999999


Q ss_pred             EeccCC
Q 026255          127 FNVSDN  132 (241)
Q Consensus       127 L~l~~N  132 (241)
                      |++++|
T Consensus       378 L~L~~N  383 (384)
T d2omza2         378 LGLNDQ  383 (384)
T ss_dssp             EECCCE
T ss_pred             eeCCCC
Confidence            999988

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.5e-10  Score=90.18  Aligned_cols=143  Identities=20%  Similarity=0.216  Sum_probs=103.1

Q ss_pred             CCCCCCccccccccCCCCcccccc-cc--eeEEEEEeeccccc-ccCccCcCccEEEccCCCCCccchhhhcCCCCCceE
Q 026255            4 FNTSELRYLQDVLFPYGQVSSNVL-GT--YDYSMTMNSKGRMM-TYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVL   79 (241)
Q Consensus         4 ~~~~~l~~L~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~-~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L   79 (241)
                      ..+.++++|+.++++.|+++.... ..  ....+.++...+.. ....-+++|+.|++++|.+.. + ..+..++.++.+
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l  139 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL  139 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEE
T ss_pred             hhHhhCCCCCEEeCCCccccCccccccCccccccccccccccccccccccccccccccccccccc-c-cccccccccccc
Confidence            345677888889999998876331 21  12223333322221 112336789999999999875 3 357889999999


Q ss_pred             ecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCccccc
Q 026255           80 NLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD  153 (241)
Q Consensus        80 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~  153 (241)
                      ++++|.+++ . ..+..+++|+.+++++|++++ ++. +..+++|+.|++++|+++ .+|....++++..+++.
T Consensus       140 ~~~~n~l~~-~-~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~-~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         140 YLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-BCGGGTTCTTCSEEEEE
T ss_pred             ccccccccc-c-ccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCC-CChhhcCCCCCCEEEcc
Confidence            999999984 3 346789999999999999984 443 889999999999999998 45655556666666654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=7e-10  Score=87.11  Aligned_cols=142  Identities=17%  Similarity=0.195  Sum_probs=95.9

Q ss_pred             CCCCCccccccccCCCCccccc-ccceeEEEEEeecccc---cccCccCcCccEEEccCCCCCccchhhhcCCCCCceEe
Q 026255            5 NTSELRYLQDVLFPYGQVSSNV-LGTYDYSMTMNSKGRM---MTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLN   80 (241)
Q Consensus         5 ~~~~l~~L~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~   80 (241)
                      .+++++.|+.+++..+.++... +........+......   .......+.++.+.++.+.+....  .+..+++|+.|+
T Consensus        80 ~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~  157 (227)
T d1h6ua2          80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLS  157 (227)
T ss_dssp             GGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhhchhh--hhcccccccccc
Confidence            3566666777777777766432 2222212222222211   111233677889999999987643  367889999999


Q ss_pred             cccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEeccCCcccCCCCCCCccCccCccccc
Q 026255           81 LHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFNVSDNYLTGPIPQGKQFATFDNTSFD  153 (241)
Q Consensus        81 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~g~~p~~~~~~~l~~~~~~  153 (241)
                      +++|.+.. .+ .++++++|+.|++++|++++ ++. +..+++|++|++++|++++ ++....+..+..++++
T Consensus       158 l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt~-i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         158 IGNAQVSD-LT-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLT  225 (227)
T ss_dssp             CCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEE
T ss_pred             cccccccc-ch-hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCCC-CcccccCCCCCEEEee
Confidence            99999884 33 37899999999999999984 554 7889999999999999984 4444455666665553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.01  E-value=3.6e-12  Score=98.94  Aligned_cols=104  Identities=20%  Similarity=0.248  Sum_probs=82.3

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      +++|++|+|++|+|+.. + .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+ +.+..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l-~~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CH-HHHHHHHHSSEEE
T ss_pred             ccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccccccccccccccccccccc-cc-ccccccccccccc
Confidence            67899999999999864 3 4788999999999999998 66766666678999999999998 44 3578889999999


Q ss_pred             ccCCcccCCC--CCCCccCccCcccccCCCC
Q 026255          129 VSDNYLTGPI--PQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~~--p~~~~~~~l~~~~~~~n~~  157 (241)
                      +++|+++...  .....++.+..++++||+.
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccchhccccccccccCCCccceeecCCCcc
Confidence            9999987421  1224567788888888864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.00  E-value=1.6e-12  Score=101.05  Aligned_cols=89  Identities=24%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             cCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCc--hhHhhccccc
Q 026255           48 IPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIP--QQLVELTFLE  125 (241)
Q Consensus        48 ~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~  125 (241)
                      -+++|++|+|++|.|+. +|..+..++.|+.|++++|.++ .++ .+..+++|+.|++++|+++ .++  ..+..+++|+
T Consensus        68 ~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~  143 (198)
T d1m9la_          68 GMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCS
T ss_pred             CCccccChhhccccccc-cccccccccccccccccccccc-ccc-cccccccccccccccchhc-cccccccccCCCccc
Confidence            36789999999999976 5555566678999999999999 444 4778899999999999998 444  4678899999


Q ss_pred             eEeccCCcccCCCCC
Q 026255          126 FFNVSDNYLTGPIPQ  140 (241)
Q Consensus       126 ~L~l~~N~l~g~~p~  140 (241)
                      .|++++|++....+.
T Consensus       144 ~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         144 DLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEECSSHHHHHHCT
T ss_pred             eeecCCCccccCccc
Confidence            999999998755443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.1e-10  Score=88.04  Aligned_cols=104  Identities=13%  Similarity=0.202  Sum_probs=86.2

Q ss_pred             EEEEeecccccccCccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCC-ccccCCCCccceeecc-CCcC
Q 026255           33 SMTMNSKGRMMTYNKIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHI-PSCLGNLTNLESLDLS-NNKF  110 (241)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls-~N~l  110 (241)
                      .+.|+.+++...+..+++++++|++++|.|+...+..|.++++|++|++++|.+...+ +..|..++.++.+++. .|.+
T Consensus        12 ~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l   91 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   91 (242)
T ss_dssp             EEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTC
T ss_pred             EEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccc
Confidence            4567666766666677889999999999998877778999999999999999987644 4567889999999876 4678


Q ss_pred             CCCCchhHhhccccceEeccCCcccC
Q 026255          111 SGRIPQQLVELTFLEFFNVSDNYLTG  136 (241)
Q Consensus       111 ~~~~p~~l~~l~~L~~L~l~~N~l~g  136 (241)
                      ....+..|..+++|+++++++|.+..
T Consensus        92 ~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          92 LYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             CEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccccccccccchhhhcc
Confidence            76777778899999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.67  E-value=5.3e-08  Score=79.98  Aligned_cols=82  Identities=30%  Similarity=0.494  Sum_probs=60.8

Q ss_pred             ccCcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           47 KIPDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        47 ~~~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      ..+++|++|++++|+|+. +|..   +.+|+.|++++|.++ .++..   .+.|++|++++|.++ .+|. +..+++|++
T Consensus        55 ~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~  124 (353)
T d1jl5a_          55 ELPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVSNNQLE-KLPE-LQNSSFLKI  124 (353)
T ss_dssp             SCCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred             CCCCCCCEEECCCCCCcc-cccc---hhhhhhhhhhhcccc-hhhhh---ccccccccccccccc-cccc-hhhhcccee
Confidence            346678889999998875 5644   457888888888887 55432   246888999999888 5665 567888899


Q ss_pred             EeccCCcccCCC
Q 026255          127 FNVSDNYLTGPI  138 (241)
Q Consensus       127 L~l~~N~l~g~~  138 (241)
                      +++++|.+....
T Consensus       125 L~l~~~~~~~~~  136 (353)
T d1jl5a_         125 IDVDNNSLKKLP  136 (353)
T ss_dssp             EECCSSCCSCCC
T ss_pred             eccccccccccc
Confidence            999888877443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.63  E-value=1e-07  Score=78.22  Aligned_cols=96  Identities=24%  Similarity=0.308  Sum_probs=76.8

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccceEe
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEFFN  128 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  128 (241)
                      ..++++|||++|.++. +|+.   .++|++|++++|+++ .+|..+   .+|+.|++++|+++ .++..   .+.|++|+
T Consensus        37 ~~~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~  104 (353)
T d1jl5a_          37 DRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLG  104 (353)
T ss_dssp             HHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEE
T ss_pred             HcCCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccc
Confidence            3579999999999976 6653   578999999999999 788754   57899999999998 55532   24699999


Q ss_pred             ccCCcccCCCCCCCccCccCcccccCCCC
Q 026255          129 VSDNYLTGPIPQGKQFATFDNTSFDANSG  157 (241)
Q Consensus       129 l~~N~l~g~~p~~~~~~~l~~~~~~~n~~  157 (241)
                      +++|.+. .+|....+..+..+++.++..
T Consensus       105 L~~n~l~-~lp~~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         105 VSNNQLE-KLPELQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             CCSSCCS-SCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccccc-cccchhhhccceeeccccccc
Confidence            9999998 667766777888888777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-07  Score=73.26  Aligned_cols=90  Identities=20%  Similarity=0.162  Sum_probs=57.0

Q ss_pred             CcCccEEEccCCCCCccchhhhcCCC-CCceEecccCcCCCCCccccCCCCcccee-eccCCcCCCCCchhHhhccccce
Q 026255           49 PDILTGIILSNNRFDEAIPASISNLK-GLQVLNLHNNNLQGHIPSCLGNLTNLESL-DLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      +..+..+...++.+....+..+..++ .++.|++++|.++. ++.......+++.+ ++++|+++...+..|..+++|++
T Consensus       127 l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~  205 (242)
T d1xwdc1         127 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI  205 (242)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCE
Confidence            34455555666677665556665554 67778888888874 43333344454444 56777787333345777888888


Q ss_pred             EeccCCcccCCCCC
Q 026255          127 FNVSDNYLTGPIPQ  140 (241)
Q Consensus       127 L~l~~N~l~g~~p~  140 (241)
                      |++++|+++ .+|.
T Consensus       206 L~Ls~N~l~-~l~~  218 (242)
T d1xwdc1         206 LDISRTRIH-SLPS  218 (242)
T ss_dssp             EECTTSCCC-CCCS
T ss_pred             EECCCCcCC-ccCH
Confidence            888888887 4443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.5e-08  Score=73.37  Aligned_cols=66  Identities=29%  Similarity=0.269  Sum_probs=31.8

Q ss_pred             hcCCCCCceEecccCcCCCCC--ccccCCCCccceeeccCCcCCCCCch-hHhhccccceEeccCCcccC
Q 026255           70 ISNLKGLQVLNLHNNNLQGHI--PSCLGNLTNLESLDLSNNKFSGRIPQ-QLVELTFLEFFNVSDNYLTG  136 (241)
Q Consensus        70 ~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~l~~N~l~g  136 (241)
                      +..++.|++|+|++|+++...  +..+..+++|+.|++++|.++. +++ .+.....|+.+++++|++..
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCc
Confidence            344555555555555555221  2233445555555555555552 222 22223345555555555553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.4e-08  Score=83.85  Aligned_cols=110  Identities=21%  Similarity=0.245  Sum_probs=75.3

Q ss_pred             cccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCc----cchhhhcCCCCCceEecccCcC
Q 026255           11 YLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDE----AIPASISNLKGLQVLNLHNNNL   86 (241)
Q Consensus        11 ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~----~~p~~~~~l~~L~~L~Ls~N~l   86 (241)
                      .|+++++++++++.....               .....++++++|+|++|.++.    .+...+..+++|+.|+|++|.+
T Consensus         3 ~l~~ld~~~~~i~~~~~~---------------~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i   67 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWA---------------ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL   67 (460)
T ss_dssp             EEEEEEEESCCCCHHHHH---------------HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC
T ss_pred             CCCEEEeeCCcCChHHHH---------------HHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcC
Confidence            466777777777632211               111236788999999998873    3345567889999999999988


Q ss_pred             CCC----CccccCC-CCccceeeccCCcCCCC----CchhHhhccccceEeccCCccc
Q 026255           87 QGH----IPSCLGN-LTNLESLDLSNNKFSGR----IPQQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus        87 ~~~----~p~~~~~-l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~  135 (241)
                      +..    +...+.. ..+|+.|++++|+++..    ++..+..+++|++|++++|.+.
T Consensus        68 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          68 GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            521    2222222 34799999999998743    3445666788999999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=5.2e-07  Score=66.80  Aligned_cols=80  Identities=24%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             CcCccEEEccCCCCCccc--hhhhcCCCCCceEecccCcCCCCCccccCCCCccceeeccCCcCCCCCch-------hHh
Q 026255           49 PDILTGIILSNNRFDEAI--PASISNLKGLQVLNLHNNNLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQ-------QLV  119 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~  119 (241)
                      +++|++|+|++|+|+...  +..+..+++|+.|+|++|.++...+-.+-....|+.+++++|++......       .+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            556777777777776532  33455677777777777777732221222334577777777777644332       134


Q ss_pred             hccccceEe
Q 026255          120 ELTFLEFFN  128 (241)
Q Consensus       120 ~l~~L~~L~  128 (241)
                      .+|+|+.||
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            466666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.5e-06  Score=70.05  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=52.0

Q ss_pred             CcCccEEEccCC--CCCcc-chhhhcCCCCCceEecccC-cCCCCCccccCCCCccceeeccCC-cCCCCCchhHhhccc
Q 026255           49 PDILTGIILSNN--RFDEA-IPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNN-KFSGRIPQQLVELTF  123 (241)
Q Consensus        49 ~~~L~~L~L~~n--~i~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~  123 (241)
                      .++|+.|+++++  .++.. +...+..+++|++|++++| .+++.....+..+++|++|+++++ .++......+..+++
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~  226 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  226 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCC
Confidence            456777777754  23321 2233345677777777764 356556666677777777777773 465444455666777


Q ss_pred             cceEeccCC
Q 026255          124 LEFFNVSDN  132 (241)
Q Consensus       124 L~~L~l~~N  132 (241)
                      |+.|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            777777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.1e-07  Score=76.91  Aligned_cols=106  Identities=17%  Similarity=0.234  Sum_probs=76.0

Q ss_pred             CccEEEccCCCCCccc-hhhhcCCCCCceEecccCcCCC----CCccccCCCCccceeeccCCcCCCCCchhHhh-----
Q 026255           51 ILTGIILSNNRFDEAI-PASISNLKGLQVLNLHNNNLQG----HIPSCLGNLTNLESLDLSNNKFSGRIPQQLVE-----  120 (241)
Q Consensus        51 ~L~~L~L~~n~i~~~~-p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-----  120 (241)
                      +|++||++.|++++.. ...+..+++++.|+|++|.++.    .++..+...++|++|||++|+|+..--..+..     
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5899999999998732 3446678999999999999873    23455678899999999999986221122221     


Q ss_pred             ccccceEeccCCcccCC----CCC-CCccCccCcccccCCC
Q 026255          121 LTFLEFFNVSDNYLTGP----IPQ-GKQFATFDNTSFDANS  156 (241)
Q Consensus       121 l~~L~~L~l~~N~l~g~----~p~-~~~~~~l~~~~~~~n~  156 (241)
                      ..+|+.|++++|.++..    ++. ......+..+++.+|.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             CCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            24799999999998742    111 1334567777887775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.93  E-value=9.6e-07  Score=72.86  Aligned_cols=116  Identities=15%  Similarity=0.214  Sum_probs=60.7

Q ss_pred             CCccccccccCCCCcccccccceeEEEEEeecccccccCccCcCccEEEccCCCCCcc-----chhhhcCCCCCceEecc
Q 026255            8 ELRYLQDVLFPYGQVSSNVLGTYDYSMTMNSKGRMMTYNKIPDILTGIILSNNRFDEA-----IPASISNLKGLQVLNLH   82 (241)
Q Consensus         8 ~l~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~i~~~-----~p~~~~~l~~L~~L~Ls   82 (241)
                      ....|+.+.++.|.++......+.            ......+.++.|+|++|.|...     +...+..+++|+.|+++
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~------------~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls  223 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWA------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQ  223 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHH------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECC
T ss_pred             cCcccceeeccccccccccccccc------------chhhhhhhhcccccccccccccccccchhhhhcchhhhcccccc
Confidence            345566677777776533221100            0001134566777777766531     22234556667777777


Q ss_pred             cCcCCCC----CccccCCCCccceeeccCCcCCCCCchhH----hh--ccccceEeccCCccc
Q 026255           83 NNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIPQQL----VE--LTFLEFFNVSDNYLT  135 (241)
Q Consensus        83 ~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l----~~--l~~L~~L~l~~N~l~  135 (241)
                      +|.++..    +...+...++|++|++++|.+++.-...+    ..  .+.|++|++++|.++
T Consensus       224 ~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         224 DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            7765422    23345556667777777776653322222    21  235667777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=7.8e-05  Score=59.56  Aligned_cols=88  Identities=18%  Similarity=0.129  Sum_probs=64.5

Q ss_pred             CcCccEEEccCC-CCCccchhhhcCCCCCceEecccC-cCCCCCccccCCCCccceeeccCCcCCCCCchhHhhccccce
Q 026255           49 PDILTGIILSNN-RFDEAIPASISNLKGLQVLNLHNN-NLQGHIPSCLGNLTNLESLDLSNNKFSGRIPQQLVELTFLEF  126 (241)
Q Consensus        49 ~~~L~~L~L~~n-~i~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~  126 (241)
                      +++|++|++++| .+++.....+..+++|++|+++++ .+++.....++.+++|+.|+++++--.+.++.....+++|  
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L--  251 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL--  251 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS--
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc--
Confidence            678999999986 577777778899999999999994 6776666778899999999999882222233323445554  


Q ss_pred             EeccCCcccCCCC
Q 026255          127 FNVSDNYLTGPIP  139 (241)
Q Consensus       127 L~l~~N~l~g~~p  139 (241)
                       .+..++++...+
T Consensus       252 -~i~~~~ls~~~~  263 (284)
T d2astb2         252 -QINCSHFTTIAR  263 (284)
T ss_dssp             -EESCCCSCCTTC
T ss_pred             -cccCccCCCCCC
Confidence             456677775433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.66  E-value=7.8e-06  Score=67.20  Aligned_cols=108  Identities=18%  Similarity=0.237  Sum_probs=78.3

Q ss_pred             CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC-----CccccCCCCccceeeccCCcCCCC----Cc
Q 026255           49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH-----IPSCLGNLTNLESLDLSNNKFSGR----IP  115 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p  115 (241)
                      .+.|+.+++++|.+...    +...+...+.|+.|++++|.++..     +...+...++|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            56799999999998642    334456788999999999998732     334567789999999999998632    33


Q ss_pred             hhHhhccccceEeccCCcccCCCCC-------CCccCccCcccccCCC
Q 026255          116 QQLVELTFLEFFNVSDNYLTGPIPQ-------GKQFATFDNTSFDANS  156 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~~N~l~g~~p~-------~~~~~~l~~~~~~~n~  156 (241)
                      ..+..+++|++|++++|.+++.-..       ......+..+++++|.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            4566788999999999998642110       0123456777887774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=4.5e-05  Score=56.22  Aligned_cols=87  Identities=13%  Similarity=0.192  Sum_probs=57.3

Q ss_pred             CcCccEEEccCC-CCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCCc----
Q 026255           49 PDILTGIILSNN-RFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRIP----  115 (241)
Q Consensus        49 ~~~L~~L~L~~n-~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p----  115 (241)
                      .+.|++|+|+++ .++..    +-..+...+.|+.|++++|.+...    +...+...+.|+.|++++|.++..--    
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            467889999874 46432    223456677888999998887632    22334456788889999888874222    


Q ss_pred             hhHhhccccceEeccCCccc
Q 026255          116 QQLVELTFLEFFNVSDNYLT  135 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~~N~l~  135 (241)
                      ..+...++|++|++++|.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHhCCcCCEEECCCCcCC
Confidence            23344567888888887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.12  E-value=0.00026  Score=51.87  Aligned_cols=86  Identities=16%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             CcCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCC-------
Q 026255           49 PDILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGR-------  113 (241)
Q Consensus        49 ~~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------  113 (241)
                      .+.|++|+|++|.+...    +...+...+.|+.|++++|.++..    +-..+..-++|+.|++++|.+...       
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHH
Confidence            45699999999998642    334456678999999999998743    223466778899999999987632       


Q ss_pred             CchhHhhccccceEeccCCcc
Q 026255          114 IPQQLVELTFLEFFNVSDNYL  134 (241)
Q Consensus       114 ~p~~l~~l~~L~~L~l~~N~l  134 (241)
                      +...+...++|+.|+++.+..
T Consensus       123 l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhCCCccEeeCcCCCc
Confidence            233445567888888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.66  E-value=0.003  Score=45.68  Aligned_cols=83  Identities=18%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             cCccEEEccCCCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeec--cCCcCCC----CCc
Q 026255           50 DILTGIILSNNRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDL--SNNKFSG----RIP  115 (241)
Q Consensus        50 ~~L~~L~L~~n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~----~~p  115 (241)
                      ++|++|++++|.+...    +-..+...+.++.+++++|.+...    +...+...++|+.++|  +.|.+..    .+.
T Consensus        46 ~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La  125 (166)
T d1io0a_          46 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA  125 (166)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred             CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHH
Confidence            3455555655555432    112233445555555555555422    1123334445554333  3444432    122


Q ss_pred             hhHhhccccceEeccCC
Q 026255          116 QQLVELTFLEFFNVSDN  132 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~~N  132 (241)
                      ..+...++|+.|+++.+
T Consensus       126 ~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         126 NMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHCSSCCEEECCCS
T ss_pred             HHHHhCCCcCEEeCcCC
Confidence            23334455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.47  E-value=0.0035  Score=45.35  Aligned_cols=86  Identities=16%  Similarity=0.127  Sum_probs=53.0

Q ss_pred             CcCccEEEccC-CCCCcc----chhhhcCCCCCceEecccCcCCCC----CccccCCCCccceeeccCCcCCCCC----c
Q 026255           49 PDILTGIILSN-NRFDEA----IPASISNLKGLQVLNLHNNNLQGH----IPSCLGNLTNLESLDLSNNKFSGRI----P  115 (241)
Q Consensus        49 ~~~L~~L~L~~-n~i~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p  115 (241)
                      .+.|++|+|++ +.++..    +-..+...++|+.|++++|.++..    +-..+...++++.+++++|.++...    -
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            45788888887 456432    223345778888888888887643    2223445678888888888876321    1


Q ss_pred             hhHhhccccceEecc--CCcc
Q 026255          116 QQLVELTFLEFFNVS--DNYL  134 (241)
Q Consensus       116 ~~l~~l~~L~~L~l~--~N~l  134 (241)
                      ..+...++|+.++++  +|.+
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i  116 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPL  116 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHhCccccEEeeccCCCcC
Confidence            234445667665553  4444