Citrus Sinensis ID: 026263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MKVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKMESSGGDLKLFGVWLKGERKKRAREETVVCGGSHEMKKVEFRAPYINSSKVCN
Secondary Structure (PSIPRED)
ccEEEEEEEccHHcHHHHHcccccccccccHHHHcccccccEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccccccHHHcccccccccEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEccccHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccccHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEccccccccccccccccccccccccccccEEEEEEEEccccccccccHHccccccccccEEEccccEEEcccccc
Coil and Loop (DISEMBL)
mkvaplllSGKLLIFAKdllpnyfkhnnfSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRktatgpsaqtagktkatspsnsgedmgststsspesknqgsvetakfadlsdenaklrrdNETLSSELAQAKKQCDELITFLTEYVKVgpdqinrimgqgscgsildglvgdtdddekmessggdlkLFGVWLkgerkkrareetvvcggshemkkvefrapyinsskvcn
Flexible Loop (DISEMBL)
MKVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTeirrrktatgpsaqtagktkatspsnsgedmgststsspesknqgsvetakfadlsdenaklrRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKmessggdlklfgvwlkgerkkrareetvvcggshemkkvefrapyinsskvcn
Low Complexity Region (SEG)
MKVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKMESSGGDLKLFGVWLKGERKKRAREETVVCGGSHEMKKVEFRAPYINSSKVCN
Disordered region (IsUnstruct)
****PLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELL*******************************************************************************QCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVG**************LKLFGVWLKG*********TVVCG**********************
Disordered Region (DISOPRED)
MKVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTE******************************************************SDENAKLRRDNETLSS*LAQ*KKQCDELITFLTEY**********************************************WL********************************S*KVC*
Disordered Region (DISEMBL)
MKVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRR********************************************AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDT********SGGDLKLFGVWLKGE**************SHEMKKVEFRAPYINSSKVCN
Disordered Region (DISPRO)
*KVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRR***********************EDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQ***********************GGDLKLFGVWLKGE***RAREETVVCGGSHEMKKVEFRAPYINSSKVCN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKxxxxxxxxxxxxxxxxxxxxxxxxxxxxCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKMESSGGDLKLFGVWLKGERKKRAREETVVCGGSHEMKKVEFRAPYINSSKVCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
P22335	301	Heat shock factor protein	N/A	no	0.933	0.747	0.576	2e-66
Q96320	284	Heat stress transcription	yes	no	0.912	0.774	0.534	5e-55
Q67TP9	302	Heat stress transcription	yes	no	0.900	0.718	0.401	2e-33
Q9SCW4	299	Heat stress transcription	no	no	0.605	0.488	0.487	3e-33
Q6Z9C8	390	Heat stress transcription	no	no	0.589	0.364	0.462	8e-32
Q9C635	348	Heat stress transcription	no	no	0.605	0.419	0.449	2e-31
Q7XRX3	305	Heat stress transcription	no	no	0.585	0.462	0.439	7e-29
Q652B0	454	Heat stress transcription	no	no	0.589	0.312	0.395	5e-28
Q10KX8	305	Heat stress transcription	no	no	0.780	0.616	0.362	8e-28
Q7XHZ0	310	Heat stress transcription	no	no	0.817	0.635	0.386	2e-27

>sp|P22335|HSF24_SOLPE Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/260 (57%), Positives = 181/260 (69%), Gaps = 35/260 (13%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLP YFKHNNFSSFVRQLNTYGFRKIV DKWEFANENF+RG +ELLT IRRRKT T
Sbjct: 44  FAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVT 103

Query: 75  GPSAQTAGKTKA----TSPSNSGEDMGSTSTSSPESKNQGSVET----AKFADLSDENAK 126
             S    GK+ A     SP NSG+D+GS+STSSP+SKN GSV+T    ++F DLSDEN K
Sbjct: 104 --STPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEK 161

Query: 127 LRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGS-CGSILDGLVGDTDD 185
           L++DN+ LSSEL QAKKQC+EL+ FL++YVKV PD INRIM QG+  GS L+ LV +   
Sbjct: 162 LKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAPDMINRIMSQGTPSGSSLEELVKEVGG 221

Query: 186 DEKMESSG--------------GD-LKLFGVWLKGERKKRAREETV-VCGGSHE-MKKVE 228
            + +E  G              GD LKLFGV LK ++KKR  +E +  CGG  + MK V+
Sbjct: 222 VKDLEEQGSYNDNDDKEDDDEKGDTLKLFGVLLKEKKKKRGPDENIETCGGRGKMMKTVD 281

Query: 229 FRAPYIN-------SSKVCN 241
           +  P++        SSKVCN
Sbjct: 282 YNGPWMKMSSPAGESSKVCN 301

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Solanum peruvianum (taxid: 4082)

>sp|Q96320|HSFB1_ARATH Heat stress transcription factor B-1 OS=Arabidopsis thaliana GN=HSFB1 PE=2 SV=2

 Score =  214 bits (545), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/243 (53%), Positives = 159/243 (65%), Gaps = 23/243 (9%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLP YFKHNNFSSF+RQLNTYGFRK V DKWEFAN+ FRRG  +LLT+IRRRK+  
Sbjct: 49  FAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVI 108

Query: 75  GPSAQTAGKTKATSPSNSG---EDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDN 131
             +A       + S SNSG   +   S+++S   SKN GSVE    ADLS EN KL+R+N
Sbjct: 109 ASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENM-VADLSGENEKLKREN 167

Query: 132 ETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDE---- 187
             LSSELA AKKQ DEL+TFLT ++KV P+QI++++  G    +      ++D++     
Sbjct: 168 NNLSSELAAAKKQRDELVTFLTGHLKVRPEQIDKMIKGGKFKPV------ESDEESECEG 221

Query: 188 ------KMESSGGDLKLFGVWLKGERKKRAREE-TVVCGGSH--EMKKVEFRAPYINSSK 238
                   E  G  LKLFGVWLKGERKKR R+E   V  GS   E+K V+F AP   SSK
Sbjct: 222 CDGGGGAEEGVGEGLKLFGVWLKGERKKRDRDEKNYVVSGSRMTEIKNVDFHAPLWKSSK 281

Query: 239 VCN 241
           VCN
Sbjct: 282 VCN 284

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q67TP9|HSFB1_ORYSJ Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/229 (40%), Positives = 133/229 (58%), Gaps = 12/229 (5%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FA+DLLP +FKH NFSSFVRQLNTYGFRK+V D+WEFAN NFRRG + LL+ IRRRK  T
Sbjct: 65  FARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATT 124

Query: 75  GPSAQTAG---KTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDN 131
             S+++ G         P        S +TSS   ++  S  +   AD++ EN +LR+DN
Sbjct: 125 PQSSKSCGSGVNVAFPPPLPPLPPEPSATTSSGNDRSSSSASSPPRADITSENEQLRKDN 184

Query: 132 ETLSSELAQAKKQCDELITFLTEYVKVGPDQIN-RIMGQGSCGSILDGLVGDTDDDEKME 190
           +TL+ ELA+A++ C+EL+ FL+ ++ V   Q++ R++ Q    +   G+ G+    E   
Sbjct: 185 QTLTMELARARRHCEELLGFLSRFLDV--RQLDLRLLMQEDMRAAAGGVGGEQRVQEHAR 242

Query: 191 SSGGDLKLFGVWLK----GERKKRAREETVVCGGSHEMKKVEFRAPYIN 235
                +KLFGV L        +KRAR E         +K +    P+++
Sbjct: 243 EEKC-VKLFGVLLDDTHGAATRKRARCEEAA-ASERPIKMIRIGEPWVS 289

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SCW4|HFB2A_ARATH Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1

 Score =  142 bits (357), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 98/158 (62%), Gaps = 12/158 (7%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRK--- 71
           FAKDLLP +FKHNNFSSFVRQLNTYGF+K+V D+WEF+N+ F+RG + LL EI+RRK   
Sbjct: 58  FAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITT 117

Query: 72  ---TATGPSAQTAGKTKATSPSNSGEDMGSTS--TSSPESKNQGSVETAKFADLS----D 122
              T   PS++   +T   SPSNSGED  +    +SSP S      +T     LS    +
Sbjct: 118 THQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLE 177

Query: 123 ENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGP 160
           EN KLR  N  L+ EL Q K  CD + + ++ YV   P
Sbjct: 178 ENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQP 215

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6Z9C8|HFB2B_ORYSJ Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/162 (46%), Positives = 96/162 (59%), Gaps = 20/162 (12%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FA+DLLP YFKHNNFSSFVRQLNTYGFRKIV D+WEFAN+ FRRG R LL EI RRK   
Sbjct: 83  FARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTP 142

Query: 75  G-------------PSAQTAGKTKATSPSNSGEDMGSTSTSSPE-------SKNQGSVET 114
                         P A     T+  SP  SGE+   +S+SSPE       + +      
Sbjct: 143 PAPAATTAAVAAAIPMALPVTTTRDGSPVLSGEEQVISSSSSPEPPLVLPQAPSGSGSGG 202

Query: 115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYV 156
               D+ DEN +LRR+N  L+ EL+Q +K C+ ++  +++Y 
Sbjct: 203 VASGDVGDENERLRRENAQLARELSQMRKLCNNILLLMSKYA 244

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9C635|HSFB4_ARATH Heat stress transcription factor B-4 OS=Arabidopsis thaliana GN=HSFB4 PE=2 SV=1

 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 94/169 (55%), Gaps = 23/169 (13%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTA- 73
           FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIV D+WEFANE F+RG + LL EI RRKT+ 
Sbjct: 69  FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTSQ 128

Query: 74  --------------TGPSAQTAG-------KTKATSPSNSGEDMGSTSTSSPESKNQGSV 112
                           P    +G         + T+P         +  S P    Q   
Sbjct: 129 MIPQQHSPFMSHHHAPPQIPFSGGSFFPLPPPRVTTPEEDHYWCDDSPPSRPRVIPQQID 188

Query: 113 ETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVK-VGP 160
             A+   LS++N +LRR N  L SELA  KK  +++I F+  +VK V P
Sbjct: 189 TAAQVTALSEDNERLRRSNTVLMSELAHMKKLYNDIIYFVQNHVKPVAP 237

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XRX3|HFB2A_ORYSJ Heat stress transcription factor B-2a OS=Oryza sativa subsp. japonica GN=HSFB2A PE=2 SV=2

 Score =  127 bits (319), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 96/148 (64%), Gaps = 7/148 (4%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FA+DLLP +FKH+NFSSFVRQLNTYGF+K+VAD+WEFAN+ FRRG + LL  I+RRK + 
Sbjct: 45  FARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADRWEFANDCFRRGEKHLLGGIQRRKGSG 104

Query: 75  GPSAQTAGKTK-------ATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKL 127
              A  A           ++ P++SG +   +S+    +    +  +   A+L +ENA+L
Sbjct: 105 TGGAGAAPAGGIPTAIPISSPPTSSGGEPAVSSSPPRGAAGIAAGVSGAVAELEEENARL 164

Query: 128 RRDNETLSSELAQAKKQCDELITFLTEY 155
           RR+N  L+ ELA+A++ CD +   ++ Y
Sbjct: 165 RRENARLARELARARRVCDGVRRLVSRY 192

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q652B0|HFB2C_ORYSJ Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1

 Score =  124 bits (311), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 95/182 (52%), Gaps = 40/182 (21%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTA- 73
           FA+DLLP YFKHNNFSSFVRQLNTYGFRKIV D+WEFAN+ FRRG + LL +I RRK   
Sbjct: 73  FARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGEKRLLCDIHRRKVVA 132

Query: 74  ----------------------------TGPSAQTAGKTKATSPSNSGED--MGSTSTSS 103
                                         P       T+A SP++S E+  + S S S 
Sbjct: 133 AAAAAPPPPSPGMATAAAAVASGAVTVAAAPIPMALPVTRAGSPAHSSEEQVLSSNSGSG 192

Query: 104 PESKN---------QGSVETAKFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE 154
            E +           G   +A   D+ +EN +LRR+N  L+ EL   KK C+ ++  +++
Sbjct: 193 EEHRQASGSGSAPGGGGGGSASGGDMGEENERLRRENARLTRELGHMKKLCNNILLLMSK 252

Query: 155 YV 156
           Y 
Sbjct: 253 YA 254

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10KX8|HFB4D_ORYSJ Heat stress transcription factor B-4d OS=Oryza sativa subsp. japonica GN=HSFB4D PE=2 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 86/237 (36%), Positives = 119/237 (50%), Gaps = 49/237 (20%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIVAD+WEFANE FR+G + LL+EI RRK+++
Sbjct: 71  FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLSEIHRRKSSS 130

Query: 75  GPSAQTAGKTK----------ATSPSNSGEDMGSTSTSSPESKNQGSVETAKFAD----- 119
               Q                +   +     +G+ + ++   + +     A +A      
Sbjct: 131 CSQPQPPPPFPMHQHYPLSLFSPPTTPRSPPVGAAAAAAYHFQEEYCSSPADYAGGGGDL 190

Query: 120 ---LSDENAKLRRDNETLSSELAQAKKQCDELITFLTEY-----------------VKVG 159
              LS++N +LRR N  L SELA  +K  +++I FL  +                 V++G
Sbjct: 191 LAALSEDNRQLRRRNSLLLSELAHMRKLYNDIIYFLQNHVEPVAPPPLAAATSCRLVELG 250

Query: 160 PDQINRIMGQGSCGSILDGLVGDTDDDEKMESSGGDLKLFGVWLKGERKKRAREETV 216
           P    R     S         GD DDD         ++LFGV L  +  K+ R + V
Sbjct: 251 PSTTERRRCAASPS-------GDNDDDAA-------VRLFGVRLDDDHGKKRRVQLV 293

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XHZ0|HFB4B_ORYSJ Heat stress transcription factor B-4b OS=Oryza sativa subsp. japonica GN=HSFB4B PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 115/233 (49%), Gaps = 36/233 (15%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTA- 73
           FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIVAD+WEFANE FR+G + LL EI RRK++ 
Sbjct: 69  FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADRWEFANEFFRKGAKHLLAEIHRRKSSQ 128

Query: 74  ----------------TGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKF 117
                             P +               E+  +T+  +      G       
Sbjct: 129 PPPPPMPHQPYHHHHHLNPFSLPPPPPAYHHHHLIQEEPATTAHCT--VAGDGGEGGDFL 186

Query: 118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQI------------NR 165
           A LS++N +LRR N  L SELA  KK  +++I FL  +V                   + 
Sbjct: 187 AALSEDNRQLRRRNSLLLSELAHMKKLYNDIIYFLQNHVAPVTTTTTTPSSTAMAAAQHH 246

Query: 166 IMGQGSCGSI-LDG--LVGDTDDDEKMESSGGD-LKLFGVWLKGERKKRAREE 214
           +    SC  + LD           +   + GGD +KLFGV L G RKKRA  +
Sbjct: 247 LPAAASCRLMELDSPDHSPPPPPPKTPATDGGDTVKLFGVSLHG-RKKRAHRD 298

Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
359480674	286	PREDICTED: heat shock factor protein HSF	0.933	0.786	0.669	2e-80
292698371	278	heat stress transcription factor [Carica	0.933	0.809	0.680	4e-76
147839732	354	hypothetical protein VITISV_028661 [Viti	0.917	0.624	0.555	8e-72
302398877	294	HSF domain class transcription factor [M	0.950	0.778	0.571	6e-69
5821136	292	heat shock factor [Nicotiana tabacum]	0.917	0.756	0.584	1e-65
123684	301	RecName: Full=Heat shock factor protein	0.933	0.747	0.576	9e-65
224094324	258	predicted protein [Populus trichocarpa]	0.863	0.806	0.641	1e-63
449512921	252	PREDICTED: heat shock factor protein HSF	0.796	0.761	0.586	9e-60
449448324	290	PREDICTED: heat shock factor protein HSF	0.933	0.775	0.558	2e-59
157849714	285	heat shock factor 4 [Brassica rapa]	0.921	0.778	0.560	1e-58

>gi|359480674|ref|XP_002277765.2| PREDICTED: heat shock factor protein HSF24-like [Vitis vinifera] gi|296082424|emb|CBI21429.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/245 (66%), Positives = 191/245 (77%), Gaps = 20/245 (8%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV DKWEFANE F+RG REL++EIRRRKT T
Sbjct: 44  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGQRELMSEIRRRKTTT 103

Query: 75  GPSAQT--AGKTKA---TSPSNSGEDMGSTSTSSPESKNQGSVE---TAKFADLSDENAK 126
             +AQ    GK+     +SP+NSGED+GSTSTSSP+SKN GSVE   TA+FADLSDEN K
Sbjct: 104 SSTAQALPGGKSAGGGTSSPTNSGEDLGSTSTSSPDSKNPGSVETTTTAQFADLSDENEK 163

Query: 127 LRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGD---- 182
           L++DNE+LS+ELAQ K+QC+ELI FLTEYVKV PDQINRIM Q SCGS   GLVG+    
Sbjct: 164 LKKDNESLSTELAQTKRQCEELIAFLTEYVKVAPDQINRIMKQESCGSGHGGLVGEIGGS 223

Query: 183 ----TDDDEKMESSGGDLKLFGVWLKGERKKRAREETVVCGGSH--EMKKVEFRAPYINS 236
                DD++  + +   LKLFGVWLKG +KKR REE +  GG H  EMK V+F AP++ +
Sbjct: 224 VDDDDDDEKDEDPNEESLKLFGVWLKG-KKKRGREEKMGYGGPHQKEMKTVDFEAPWM-T 281

Query: 237 SKVCN 241
           SKVCN
Sbjct: 282 SKVCN 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292698371|dbj|BAI99728.1| heat stress transcription factor [Carica papaya]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 160/235 (68%), Positives = 181/235 (77%), Gaps = 10/235 (4%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV DKWEFANE FRRG +ELL+EIRRRKT +
Sbjct: 44  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFRRGQKELLSEIRRRKTFS 103

Query: 75  GPSAQTAGKTKA----TSPSNSGEDMGSTSTSSPESKNQGSVETA---KFADLSDENAKL 127
            PS   AG   A     SPSNSGED+GS+STSSP+SKN GSVETA   +FADLSDEN KL
Sbjct: 104 -PSPTPAGGNNAGAGLISPSNSGEDLGSSSTSSPDSKNPGSVETAGTAQFADLSDENEKL 162

Query: 128 RRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDE 187
           +RDN+ LSSELA AKKQCDELI FLTEYVKVGPDQINRIM QG+CGSI DG  G     +
Sbjct: 163 KRDNQMLSSELAHAKKQCDELIAFLTEYVKVGPDQINRIMRQGNCGSIFDGPGGVAPGGD 222

Query: 188 KMESSGGDLKLFGVWLKGERKKRAREETVVCGGSH--EMKKVEFRAPYINSSKVC 240
             +  G  LKLFGVW+KGE++KR  +E +   G+     KKV+F  P + SS+VC
Sbjct: 223 DGDGEGEGLKLFGVWVKGEKRKRDDDENMGFSGTQLKGTKKVQFHTPVLKSSRVC 277

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147839732|emb|CAN61780.1| hypothetical protein VITISV_028661 [Vitis vinifera]

 Score =  275 bits (704), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 160/288 (55%), Positives = 186/288 (64%), Gaps = 67/288 (23%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTY----------------------------------- 39
           FAKDLLPNYFKHNNFSSFVRQLNTY                                   
Sbjct: 44  FAKDLLPNYFKHNNFSSFVRQLNTYVRHLSSSLCSHTFLYSILVLSFDXPPVWPVRNREG 103

Query: 40  -------------GFRKIVADKWEFANENFRRGHRELLTEIRRRKTATGPSAQT--AGKT 84
                        GFRKIV DKWEFANE F+RG REL++EIRRRKT T  +AQ    GK+
Sbjct: 104 KKKMKKERYPIRSGFRKIVPDKWEFANEYFKRGQRELMSEIRRRKTTTSSTAQVPPGGKS 163

Query: 85  KA---TSPSNSGEDMGSTSTSSPESKNQGSVET---AKFADLSDENAKLRRDNETLSSEL 138
                +SP+NSGED+GSTSTSSP+SKN GSVET   A+FADLSDEN KL++DNE+LS+EL
Sbjct: 164 AGGGTSSPTNSGEDLGSTSTSSPDSKNPGSVETTTTAQFADLSDENEKLKKDNESLSTEL 223

Query: 139 AQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDT--------DDDEKME 190
           AQ K+QC+ELI FLTEYVKV PDQINRIM Q SCGS   GLVG+         DD++  +
Sbjct: 224 AQTKRQCEELIAFLTEYVKVAPDQINRIMKQESCGSGHGGLVGEIGGSVDDDDDDEKDED 283

Query: 191 SSGGDLKLFGVWLKGERKKRAREETVVCGGSH--EMKKVEFRAPYINS 236
            +   LKLFGVWLKG +KKR REE +  GG H  EMK V+F AP++ S
Sbjct: 284 PNEESLKLFGVWLKG-KKKRGREEKMGYGGPHQKEMKTVDFEAPWMTS 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398877|gb|ADL36733.1| HSF domain class transcription factor [Malus x domestica]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 147/257 (57%), Positives = 180/257 (70%), Gaps = 28/257 (10%)

Query: 11  KLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRR 70
           K + FA+DLLP YFKHNNFSSFVRQLNTYGFRK V DKWEFANENF+RG +ELL+EIRRR
Sbjct: 40  KTVDFARDLLPKYFKHNNFSSFVRQLNTYGFRKTVPDKWEFANENFQRGQKELLSEIRRR 99

Query: 71  KTATGPSAQTAGKTKA---TSPSNSGEDMGSTSTSSPESKNQGSVETA---KFADLSDEN 124
           K  T  +AQ A   K+   ++PSNSGE++ STSTSSP+SKN GSVETA   +  +LSDEN
Sbjct: 100 KPVTSTAAQAALDEKSGGPSTPSNSGEELASTSTSSPDSKNPGSVETATLSQVVNLSDEN 159

Query: 125 AKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILD------- 177
            KL+R+NE L+SELAQ KKQC+EL+ FL +YVK+GP+QINRI+G+GS G   D       
Sbjct: 160 KKLKRENENLNSELAQTKKQCNELVGFLVKYVKMGPEQINRIIGRGSYGPTCDDFEPNDR 219

Query: 178 --GLVGDTDDDEKMESSGGDLKLFGVWLKGER----KKRAREETVVCGG------SHEMK 225
             GL  D  DD++ E  G  LKLFGVW+KG+     KK  R+E +   G      +  MK
Sbjct: 220 GLGLNMDGGDDDEEEKEG--LKLFGVWVKGDEKMKGKKTGRDEKLGVSGISGVPRTKRMK 277

Query: 226 -KVEFRAPYINSSKVCN 241
             V+F  P + S KVCN
Sbjct: 278 GGVDFHVPMMRSGKVCN 294

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5821136|dbj|BAA83710.1| heat shock factor [Nicotiana tabacum]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/255 (58%), Positives = 177/255 (69%), Gaps = 34/255 (13%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDL+P YFKHNNFSSFVRQLNTYGFRKIV DKWEFANENF+RG +ELLT IRRRKT T
Sbjct: 44  FAKDLVPTYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVT 103

Query: 75  GPSAQTAGKT----KATSPSNSGEDMGSTSTSSPESKNQGSVET---AKFADLSDENAKL 127
              A   GK+     + SP NSGED+GS+STSSP+SKN GSV+T   ++FADLSDEN KL
Sbjct: 104 PTPA--GGKSVVPGTSASPDNSGEDLGSSSTSSPDSKNPGSVDTPGKSQFADLSDENEKL 161

Query: 128 RRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGD----- 182
           ++DN+ LSSELAQAKKQCDEL+ FL +YVKV PD INRI+ QG+ GS    LV +     
Sbjct: 162 KKDNQMLSSELAQAKKQCDELVAFLNQYVKVAPDMINRIISQGTSGSSYGELVKEVIGGV 221

Query: 183 -------TDDDEKMESSGGDLKLFGVWLKGERKKRAREETVVCGGSH--EMKKVEFRAPY 233
                  +DDDEK    G  LKLFGV LK  +KKR  +E     GS    MK +++  P+
Sbjct: 222 NDLEAQGSDDDEK----GDTLKLFGVLLKENKKKRGPDENADISGSRGKMMKTMDYNLPW 277

Query: 234 IN-------SSKVCN 241
           +        S+KVCN
Sbjct: 278 MKMSSAPGESNKVCN 292

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|123684|sp|P22335.1|HSF24_SOLPE RecName: Full=Heat shock factor protein HSF24; AltName: Full=Heat shock transcription factor 24; Short=HSTF 24; AltName: Full=Heat stress transcription factor gi|19488|emb|CAA39034.1| heat stress transcription factor [Solanum peruvianum]

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 150/260 (57%), Positives = 181/260 (69%), Gaps = 35/260 (13%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLP YFKHNNFSSFVRQLNTYGFRKIV DKWEFANENF+RG +ELLT IRRRKT T
Sbjct: 44  FAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFKRGQKELLTAIRRRKTVT 103

Query: 75  GPSAQTAGKTKA----TSPSNSGEDMGSTSTSSPESKNQGSVET----AKFADLSDENAK 126
             S    GK+ A     SP NSG+D+GS+STSSP+SKN GSV+T    ++F DLSDEN K
Sbjct: 104 --STPAGGKSVAAGASASPDNSGDDIGSSSTSSPDSKNPGSVDTPGKLSQFTDLSDENEK 161

Query: 127 LRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGS-CGSILDGLVGDTDD 185
           L++DN+ LSSEL QAKKQC+EL+ FL++YVKV PD INRIM QG+  GS L+ LV +   
Sbjct: 162 LKKDNQMLSSELVQAKKQCNELVAFLSQYVKVAPDMINRIMSQGTPSGSSLEELVKEVGG 221

Query: 186 DEKMESSG--------------GD-LKLFGVWLKGERKKRAREETV-VCGGSHE-MKKVE 228
            + +E  G              GD LKLFGV LK ++KKR  +E +  CGG  + MK V+
Sbjct: 222 VKDLEEQGSYNDNDDKEDDDEKGDTLKLFGVLLKEKKKKRGPDENIETCGGRGKMMKTVD 281

Query: 229 FRAPYIN-------SSKVCN 241
           +  P++        SSKVCN
Sbjct: 282 YNGPWMKMSSPAGESSKVCN 301

Source: Solanum peruvianum

Species: Solanum peruvianum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094324|ref|XP_002310142.1| predicted protein [Populus trichocarpa] gi|222853045|gb|EEE90592.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 150/234 (64%), Positives = 172/234 (73%), Gaps = 26/234 (11%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV DKWEFANENFRRG +ELL EIRRRKTA 
Sbjct: 44  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANENFRRGQKELLAEIRRRKTAA 103

Query: 75  G-PSAQTA---GKTKATSPSNSGEDMGSTSTSSPESKNQGSVETA--KFADLSDENAKLR 128
             P+ QT+       A+S SNSGED+GSTSTSSP+SKN GSVETA  + ADLS EN +L+
Sbjct: 104 ASPTTQTSPAGKSGGASSSSNSGEDLGSTSTSSPDSKNPGSVETAATQVADLSIENEQLK 163

Query: 129 RDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEK 188
           +DN+ LSSEL QAKKQC ELI FLTEYVKV PDQINRI+G G  GS  +G   D  D+++
Sbjct: 164 KDNDVLSSELEQAKKQCGELINFLTEYVKVSPDQINRIIGCG--GSTCNG-EADVGDNQR 220

Query: 189 MESSGGDLKLFGVWLKGE-RKKRAREETVVCGGSHEMKKVEFRAPYINSSKVCN 241
                G LKLFGV LK + +KKR R+E +  GG+        RA  I   K+CN
Sbjct: 221 -----GGLKLFGVLLKCQNKKKRGRDEKMGLGGA--------RAKEI---KICN 258

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512921|ref|XP_004164178.1| PREDICTED: heat shock factor protein HSF24-like [Cucumis sativus]

 Score =  236 bits (601), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 125/213 (58%), Positives = 156/213 (73%), Gaps = 21/213 (9%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKT-- 72
           FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIV DKWEFAN+NF+RGH++LL +IRRRK   
Sbjct: 44  FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANDNFQRGHKDLLIKIRRRKAIL 103

Query: 73  ATGP-----SAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKL 127
            T P     + ++      +SPSNSGED+GSTSTS+P S + G++  A+FADL++EN KL
Sbjct: 104 ITTPIRTLHTLKSGAAAPNSSPSNSGEDIGSTSTSNPGSVDMGTI--AQFADLTEENDKL 161

Query: 128 RRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDD-- 185
           R+DNE L+SEL Q KKQCDEL+ FLT+Y+KV PDQINRIM Q +   +     G  D+  
Sbjct: 162 RKDNEMLNSELVQTKKQCDELVAFLTDYLKVAPDQINRIMKQEANNRVCSE--GGADNGR 219

Query: 186 --------DEKMESSGGDLKLFGVWLKGERKKR 210
                   +E+ E  G  LKLFGVWLKG+R++R
Sbjct: 220 SEDEEEEEEEEEEEEGETLKLFGVWLKGKRRRR 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448324|ref|XP_004141916.1| PREDICTED: heat shock factor protein HSF24-like [Cucumis sativus]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 171/249 (68%), Gaps = 24/249 (9%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKT-- 72
           FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIV DKWEFAN+NF+RGH++LL +IRRRK   
Sbjct: 44  FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANDNFQRGHKDLLIKIRRRKAIL 103

Query: 73  ATGP-----SAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKL 127
            T P     + ++      +SPSNSGED+GSTSTS+P S + G++  A+FADL++EN KL
Sbjct: 104 ITTPIRTLHTLKSGAAAPNSSPSNSGEDIGSTSTSNPGSVDMGTI--AQFADLTEENDKL 161

Query: 128 RRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDT---- 183
           R+DNE L+SEL Q KKQCDEL+ FLT+Y+KV PDQINRIM Q +   +      D     
Sbjct: 162 RKDNEMLNSELVQTKKQCDELVAFLTDYLKVAPDQINRIMKQEANNRVCSEGGADNGRSE 221

Query: 184 ----DDDEKMESSGGDLKLFGVWL---KGERKKRAREETVVC-GGSH--EMKKV-EFRAP 232
               +++E+ E  G  LKLFGVWL   K ++ KR REE   C  G H   MK   E  AP
Sbjct: 222 DEEEEEEEEEEEEGETLKLFGVWLKGKKEKKMKRGREEKKGCSNGPHAKAMKSADEMHAP 281

Query: 233 YINSSKVCN 241
            + SS VCN
Sbjct: 282 LMRSSNVCN 290

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849714|gb|ABV89640.1| heat shock factor 4 [Brassica rapa]

 Score =  232 bits (592), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 167/246 (67%), Gaps = 24/246 (9%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
           FAKDLLP YFKHNNFSSF+RQLNTYGFRK V DKWEFAN+NFRRG  ELL+EIRRRK   
Sbjct: 45  FAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDNFRRGQEELLSEIRRRKAVI 104

Query: 75  GPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETL 134
             + +       +  +++G+D GS+STSSP SK+ GSVE    ADLS EN KL+R+N +L
Sbjct: 105 AAAGKCVVVGSPSESNSAGDDHGSSSTSSPGSKHPGSVENM-VADLSGENEKLKRENSSL 163

Query: 135 SSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDEKMESSGG 194
           SSELA AK+Q DEL+ FLTE +KVGP+QI++++  G  G  L   V + + D   E  GG
Sbjct: 164 SSELAAAKRQRDELVAFLTEQMKVGPEQIDQMIKGG--GKKLKPAVEEEESD--CEGCGG 219

Query: 195 D----------------LKLFGVWLKGERKKRAREE-TVVCGGSH--EMKKVEFRAPYIN 235
           D                LKLFGVW+KGERKKR R+E   V GGSH  E+K V+F AP   
Sbjct: 220 DNGGAAVEGEKGVAGEGLKLFGVWVKGERKKRGRDEKNFVVGGSHMTEIKNVDFHAPLWK 279

Query: 236 SSKVCN 241
           SSKVCN
Sbjct: 280 SSKVCN 285

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2115015	284	HSF4 "AT4G36990" [Arabidopsis	0.925	0.785	0.579	7.3e-59
TAIR|locus:2174043	299	HSFB2A "AT5G62020" [Arabidopsi	0.937	0.755	0.390	8.3e-35
TAIR|locus:2825726	348	HSFB4 "AT1G46264" [Arabidopsis	0.244	0.169	0.813	4.8e-31
TAIR|locus:2062698	244	HSFB3 "AT2G41690" [Arabidopsis	0.585	0.577	0.433	9.6e-29
TAIR|locus:2139792	377	AT-HSFB2B [Arabidopsis thalian	0.298	0.190	0.625	2e-28
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.589	0.286	0.416	3.2e-24
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.244	0.126	0.711	3.5e-22
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.473	0.235	0.476	4.9e-22
TAIR|locus:2091762	330	HSFC1 "AT3G24520" [Arabidopsis	0.278	0.203	0.656	1.2e-21
TAIR|locus:2170832	282	HSFA6A "AT5G43840" [Arabidopsi	0.273	0.234	0.621	2.5e-21

TAIR|locus:2115015 HSF4 "AT4G36990" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
 Identities = 139/240 (57%), Positives = 163/240 (67%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
             FAKDLLP YFKHNNFSSF+RQLNTYGFRK V DKWEFAN+ FRRG  +LLT+IRRRK+  
Sbjct:    49 FAKDLLPQYFKHNNFSSFIRQLNTYGFRKTVPDKWEFANDYFRRGGEDLLTDIRRRKSVI 108

Query:    75 GPSAQTAGKTKAT-SPSNS----GEDMGSTSTSSP-ESKNQGSVETAKFADLSDENAKLR 128
                A TAGK     SPS S    G+D GS+STSSP  SKN GSVE    ADLS EN KL+
Sbjct:   109 ---ASTAGKCVVVGSPSESNSGGGDDHGSSSTSSPGSSKNPGSVENM-VADLSGENEKLK 164

Query:   129 RDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGDTDDDE- 187
             R+N  LSSELA AKKQ DEL+TFLT ++KV P+QI++++  G    +      + +  + 
Sbjct:   165 RENNNLSSELAAAKKQRDELVTFLTGHLKVRPEQIDKMIKGGKFKPVESDEESECEGCDG 224

Query:   188 ---KMESSGGDLKLFGVWLKGERKKRAREE-TVVCGGSH--EMKKVEFRAPYINSSKVCN 241
                  E  G  LKLFGVWLKGERKKR R+E   V  GS   E+K V+F AP   SSKVCN
Sbjct:   225 GGGAEEGVGEGLKLFGVWLKGERKKRDRDEKNYVVSGSRMTEIKNVDFHAPLWKSSKVCN 284

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0009408 "response to heat" evidence=IEP

TAIR|locus:2174043 HSFB2A "AT5G62020" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 95/243 (39%), Positives = 133/243 (54%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRK--- 71
             FAKDLLP +FKHNNFSSFVRQLNTYGF+K+V D+WEF+N+ F+RG + LL EI+RRK   
Sbjct:    58 FAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDFFKRGEKRLLREIQRRKITT 117

Query:    72 ---TATGPSAQTAGKTKATSPSNSGEDMGSTS--TSSPESKNQGSVETAKFADLS----D 122
                T   PS++   +T   SPSNSGED  +    +SSP S      +T     LS    +
Sbjct:   118 THQTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQTKTTGNGGLSVELLE 177

Query:   123 ENAKLRRDNETLSSELAQAKKQCDELITFLTEYVKVGPDQINRIMGQGSCGSILDGLVGD 182
             EN KLR  N  L+ EL Q K  CD + + ++ YV   P   +   G GS    ++ L   
Sbjct:   178 ENEKLRSQNIQLNRELTQMKSICDNIYSLMSNYVGSQPTDRSYSPG-GSSSQPMEFLPAK 236

Query:   183 TDDDEKMESSG-GDLKLFGV--WLKGERKKRAREETVVCGGSHEMKKVEFRAPYINSS-K 238
                + ++E       +LFGV   LK  R +  + +T    G +  ++  +   Y  ++ +
Sbjct:   237 RFSEMEIEEEEEASPRLFGVPIGLKRTRSEGVQVKTTAVVGENSDEETPWLRHYNRTNQR 296

Query:   239 VCN 241
             VCN
Sbjct:   297 VCN 299

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2825726 HSFB4 "AT1G46264" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTA 73
             FA+DLLPNYFKHNNFSSFVRQLNTYGFRKIV D+WEFANE F+RG + LL EI RRKT+
Sbjct:    69 FARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTS 127

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008356 "asymmetric cell division" evidence=IMP

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2062698 HSFB3 "AT2G41690" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 62/143 (43%), Positives = 84/143 (58%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
             FA+DLLP  FKH NFSSFVRQLNTYGFRK+   +WEF+NE FR+G REL++ IRRRK+  
Sbjct:    75 FARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQH 134

Query:    75 GPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFA--DLSDENAKLRRDNE 132
                 ++  +   T+   + E              Q S  ++ F    L DEN  L+ +NE
Sbjct:   135 WSHNKSNHQVVPTTTMVNQEGHQRIGIDHHHEDQQSSATSSSFVYTALLDENKCLKNENE 194

Query:   133 TLSSELAQAKKQCDELITFLTEY 155
              LS EL + KK+C +L+  +  Y
Sbjct:   195 LLSCELGKTKKKCKQLMELVERY 217

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2139792 AT-HSFB2B [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 45/72 (62%), Positives = 55/72 (76%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
             FA+DLLP YFKHNNFSSFVRQLNTYGFRK+V D+WEF+N+ F+RG + LL +I+RRK + 
Sbjct:    94 FARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFKRGEKILLRDIQRRKISQ 153

Query:    75 GPSAQTAGKTKA 86
                A  A    A
Sbjct:   154 PAMAAAAAAAAA 165

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 3.2e-24, P = 3.2e-24
 Identities = 65/156 (41%), Positives = 92/156 (58%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
             F++DLLP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG + LL +I RRK+  
Sbjct:    87 FSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQ 146

Query:    75 GPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETL 134
             G  + ++      +P +     G  S ++  S     VE  KF  L +E  +L+RD   L
Sbjct:   147 GHGSSSS------NPQSQQLSQGQGSMAALSS----CVEVGKFG-LEEEVEQLKRDKNVL 195

Query:   135 SSELAQAKKQ---CDELITFLTEYVKVGPDQINRIM 167
               EL + ++Q    D  +  L ++++V   +  +IM
Sbjct:   196 MQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIM 231

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
 Identities = 42/59 (71%), Positives = 47/59 (79%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTA 73
             FAK  LP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG +++L  I RRK A
Sbjct:    58 FAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPA 116

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 4.9e-22, P = 4.9e-22
 Identities = 62/130 (47%), Positives = 79/130 (60%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
             FA+DLLP  FKHNNFSSFVRQLNTYGFRK+  D+WEFANE F RG + LL  I RRK A 
Sbjct:    72 FARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAH 131

Query:    75 GPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDNETL 134
             G      G+    S  ++G++   +S S+        VE  KF  L +E  +L+RD   L
Sbjct:   132 GQ-----GQGHQRSQHSNGQN---SSVSA-------CVEVGKFG-LEEEVERLKRDKNVL 175

Query:   135 SSELAQAKKQ 144
               EL + ++Q
Sbjct:   176 MQELVRLRQQ 185

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2091762 HSFC1 "AT3G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 44/67 (65%), Positives = 51/67 (76%)

Query:    13 LIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKT 72
             L F++ +LP YFKHNNFSSFVRQLNTYGFRK+  D+WEFANE+F RG + LL  I RRK 
Sbjct:    50 LDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARRKH 109

Query:    73 ATGPSAQ 79
             A G   Q
Sbjct:   110 ARGMYGQ 116

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2170832 HSFA6A "AT5G43840" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 41/66 (62%), Positives = 50/66 (75%)

Query:    15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADKWEFANENFRRGHRELLTEIRRRKTAT 74
             FA   LP  FKHNNFSSFVRQLNTYGF+KI  ++WEFANE+F +G R LL  I+RRKT++
Sbjct:    54 FALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSS 113

Query:    75 GPSAQT 80
                 Q+
Sbjct:   114 QTQTQS 119

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96320	HSFB1_ARATH	No assigned EC number	0.5349	0.9128	0.7746	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019488001 SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	4e-33
smart00415	105	smart00415, HSF, heat shock factor	6e-29
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	8e-18

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  115 bits (290), Expect = 4e-33
 Identities = 40/60 (66%), Positives = 50/60 (83%), Gaps = 2/60 (3%)

Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK--WEFANENFRRGHRELLTEIRRRKT 72
          FAK +LP YFKHNNFSSFVRQLN YGF K+  D+  WEFA+ NF+RG +ELL++I+RRK+
Sbjct: 36 FAKQVLPKYFKHNNFSSFVRQLNMYGFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKS 95

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  104 bits (262), Expect = 6e-29
 Identities = 40/67 (59%), Positives = 47/67 (70%), Gaps = 11/67 (16%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREL 63
           FAK+LLP YFKHNNFSSFVRQLN YGFRK+            +D+WEFAN +F RG  EL
Sbjct: 39  FAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPEL 98

Query: 64  LTEIRRR 70
           L  I+R+
Sbjct: 99  LRNIKRK 105

Length = 105

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score = 79.8 bits (197), Expect = 8e-18
 Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 21/132 (15%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKI----------VADKWEFANENFRRGHRELL 64
           F K +LP YFKH NF+SFVRQLN YGF K+            + WEF N+NF+ G  ELL
Sbjct: 47  FTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELL 106

Query: 65  TEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDEN 124
            +I+R+K      +        +  +    ++ +      E  N  S        LS+ N
Sbjct: 107 KKIKRKKA----PSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSS-------LSNVN 155

Query: 125 AKLRRDNETLSS 136
             L      L  
Sbjct: 156 QTLLLYLNELKE 167

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG0627	304	consensus Heat shock transcription factor [Transcr	99.95
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.91
smart00415	105	HSF heat shock factor.	99.9
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.86
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	86.78
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	83.61
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	83.23
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	82.13
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	81.36
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	80.66

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=99.95  E-value=1.5e-28  Score=224.05  Aligned_cols=74  Identities=55%  Similarity=0.859  Sum_probs=70.9

Q ss_pred             CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc--CccceeecCCccCCchhhhccccccCCCCCC
Q 026263            3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV--ADKWEFANENFRRGHRELLTEIRRRKTATGP   76 (241)
Q Consensus         3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~--~~~~ef~h~~F~rg~~~lL~~I~Rkk~~~~~   76 (241)
                      -+.||||||+.+|++++||+||||+||+|||||||+|||+||.  ++.|||+|++|+||+++||++|+||++....
T Consensus        37 ~g~sFvv~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~  112 (304)
T KOG0627|consen   37 SGNSFVIWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRI  112 (304)
T ss_pred             CCCccccCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCC
Confidence            4789999999999999999999999999999999999999999  9999999999999999999999999997654

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.91  E-value=1.4e-25  Score=175.31  Aligned_cols=70  Identities=53%  Similarity=0.947  Sum_probs=58.3

Q ss_pred             CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCcccccCc---------cceeecCCccCCchhhhccccccCC
Q 026263            3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVAD---------KWEFANENFRRGHRELLTEIRRRKT   72 (241)
Q Consensus         3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~~~---------~~ef~h~~F~rg~~~lL~~I~Rkk~   72 (241)
                      -+.+|||+|+.+|+++|||+||+|+||+||+||||+|||+|+..+         .|+|+||+|+||+|++|..|+|+++
T Consensus        24 ~G~~fiI~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   24 DGDSFIIHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             TSSEEEES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred             CCCEEEEeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence            467999999999999999999999999999999999999999863         2999999999999999999999875

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=99.90  E-value=8.1e-25  Score=172.09  Aligned_cols=69  Identities=58%  Similarity=0.952  Sum_probs=65.6

Q ss_pred             CCCCcEEEecchhhhhhhhccccCCCCccchhhhccccCcccccC-----------ccceeecCCccCCchhhhcccccc
Q 026263            2 KVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHRELLTEIRRR   70 (241)
Q Consensus         2 ~~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~~-----------~~~ef~h~~F~rg~~~lL~~I~Rk   70 (241)
                      ..+.+|+|+|++.|.+.|||+||+|++|+||+||||+|||+|+..           +.|+|+||+|+||+|+||..|+||
T Consensus        26 ~~G~~f~I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       26 PSGKSFVIWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             CCCCEEEEcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence            347899999999999999999999999999999999999999986           689999999999999999999996

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.86  E-value=1.3e-22  Score=184.27  Aligned_cols=74  Identities=46%  Similarity=0.787  Sum_probs=68.0

Q ss_pred             CCCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc-C---------ccceeecCCccCCchhhhccccccC
Q 026263            2 KVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-A---------DKWEFANENFRRGHRELLTEIRRRK   71 (241)
Q Consensus         2 ~~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~-~---------~~~ef~h~~F~rg~~~lL~~I~Rkk   71 (241)
                      .-+.||||||+++|.+.|||+||||+||+|||||||+|||+||. .         +.|||.|++|++|..++|++|+|+|
T Consensus        34 ~~G~sfvI~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~k  113 (282)
T COG5169          34 PDGRSFVILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKK  113 (282)
T ss_pred             CCCCEEEEeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhh
Confidence            45789999999999999999999999999999999999999998 2         2599999999999999999999987


Q ss_pred             CCCC
Q 026263           72 TATG   75 (241)
Q Consensus        72 ~~~~   75 (241)
                      ..+.
T Consensus       114 a~~~  117 (282)
T COG5169         114 APSN  117 (282)
T ss_pred             cCcc
Confidence            7543

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=86.78  E-value=0.87  Score=43.11  Aligned_cols=29  Identities=24%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          115 AKFADLSDENAKLRRDNETLSSELAQAKK  143 (241)
Q Consensus       115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk  143 (241)
                      ++..+|.+||.+||+||..|+.|+++++.
T Consensus        32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~   60 (420)
T PF07407_consen   32 DENFALRMENHSLKKENNDLKIEVERLEN   60 (420)
T ss_pred             hhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999998753

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=83.61  E-value=3.2  Score=28.02  Aligned_cols=27  Identities=30%  Similarity=0.551  Sum_probs=15.1

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          116 KFADLSDENAKLRRDNETLSSELAQAK  142 (241)
Q Consensus       116 ~~a~L~~Ene~Lkren~~L~~EL~~~k  142 (241)
                      .+..|..+++.|.+||+.|..|+..++
T Consensus        13 ~yd~Lk~~~~~L~~E~~~L~aev~~L~   39 (45)
T PF02183_consen   13 SYDSLKAEYDSLKKENEKLRAEVQELK   39 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666655555444

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=83.23  E-value=5.7  Score=28.14  Aligned_cols=37  Identities=11%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELITF  151 (241)
Q Consensus       115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~F  151 (241)
                      +.+..|+..+..++++|+.|..++..+++.+.+|+..
T Consensus         7 n~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l   43 (55)
T PF05377_consen    7 NELPRIESSINTVKKENEEISESVEKIEENVKDLLSL   43 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567888889999999999999999999888777654

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=82.13  E-value=5.4  Score=29.54  Aligned_cols=14  Identities=36%  Similarity=0.401  Sum_probs=6.5

Q ss_pred             HHhHHHHHHHHHHH
Q 026263          117 FADLSDENAKLRRD  130 (241)
Q Consensus       117 ~a~L~~Ene~Lkre  130 (241)
                      ++.|..||+.|+.+
T Consensus        20 i~~Lq~e~eeLke~   33 (72)
T PF06005_consen   20 IALLQMENEELKEK   33 (72)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444444

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=81.36  E-value=5.9  Score=34.71  Aligned_cols=82  Identities=20%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             ecCCccCCchhhhccccccCCCCCCCccccCCCCCCCCCCCcCCCCCCCCCCCCccCCCchhhhhHHhHHHHHHHHHHHH
Q 026263           52 ANENFRRGHRELLTEIRRRKTATGPSAQTAGKTKATSPSNSGEDMGSTSTSSPESKNQGSVETAKFADLSDENAKLRRDN  131 (241)
Q Consensus        52 ~h~~F~rg~~~lL~~I~Rkk~~~~~~~q~~~~~~~~~~~~~~~d~~~~~~~s~~~~~~~~ve~~~~a~L~~Ene~Lkren  131 (241)
                      .||.|-..+|+||..|+=.     ++  . +  +.            .           ++..-|+..|.++|+.|+.++
T Consensus        17 ~~PdFf~~~~~ll~~l~~p-----h~--~-~--~a------------v-----------SL~erQ~~~LR~~~~~L~~~l   63 (225)
T PF04340_consen   17 QHPDFFERHPELLAELRLP-----HP--S-G--GA------------V-----------SLVERQLERLRERNRQLEEQL   63 (225)
T ss_dssp             ----------------------------------H------------H-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcHHHHhCHHHHHHcCCC-----CC--C-C--Cc------------c-----------cHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999987631     11  0 0  00            0           011146667778888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-cChhHHHHH
Q 026263          132 ETLSSELAQAKKQCDELITFLTEYVK-VGPDQINRI  166 (241)
Q Consensus       132 ~~L~~EL~~~kk~~~~Li~FL~~~v~-~~p~~l~~l  166 (241)
                      +.|...-.+-.+..+++-.+....++ .+.+.+-..
T Consensus        64 ~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl~~l~~~   99 (225)
T PF04340_consen   64 EELIENARENEAIFQRLHRLVLALLAARSLQELLQA   99 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC--SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            77776666556666666666666665 234443333

; PDB: 3E98_B.

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=80.66  E-value=5.5  Score=32.95  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=24.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT  153 (241)
Q Consensus       118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~  153 (241)
                      +.|..|+++|+.||..+..|+...+..|+.|..|..
T Consensus        84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~  119 (135)
T KOG4196|consen   84 AELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV  119 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            346666777777777777777777777777776664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		6e-13
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		6e-09
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		9e-08
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		1e-07
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-07
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		2e-07
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		1e-06
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		2e-06

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 11/71 (15%)
Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENFRRGHREL 63
           FAK++LP YFKHNN +SFVRQLN YGFRK+V            D  EF +  F RG  +L
Sbjct: 54  FAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQL 113
Query: 64  LTEIRRRKTAT 74
           L  I+R+ T+ 
Sbjct: 114 LENIKRKVTSV 124

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 10/66 (15%)
Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA----------DKWEFANENFRRGHRELL 64
           FAK+LLP  +KHNN +SF+RQLN YGF KI +          D+ EF++  F+R    LL
Sbjct: 41  FAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLL 100
Query: 65  TEIRRR 70
            +I+R+
Sbjct: 101 DQIKRK 106

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
          F +++LP YFKH+NF+SFVRQLN YG+ K+   K           WEF NE
Sbjct: 49 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
          F +++LP YFKH+NF+SFVRQLN YG+ K+   K           WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
          F +++LP YFKH+NF+SFVRQLN YG+ K+   K           WEF NE
Sbjct: 37 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
          F +++LP YFKH+NF+SFVRQLN YG+ K+   K           WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNXYGWHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
          F +++L  YFKH+NF+SFVRQLN YG+ K+   K           WEF NE
Sbjct: 37 FVQEVLAKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 11/51 (21%)
Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVADK-----------WEFANE 54
          F +++L  YFKH+NF+SFVRQLN YG+ K+   K           WEF NE
Sbjct: 37 FVQEVLKKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
2ldu_A	125	Heat shock factor protein 1; structural genomics,	4e-32
1hks_A	106	Heat-shock transcription factor; transcription reg	9e-32
3hts_B	102	Heat shock transcription factor; transcription reg	5e-23

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  112 bits (283), Expect = 4e-32
 Identities = 35/71 (49%), Positives = 44/71 (61%), Gaps = 11/71 (15%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHREL 63
           FAK++LP YFKHNN +SFVRQLN YGFRK+V            D  EF +  F RG  +L
Sbjct: 54  FAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQL 113

Query: 64  LTEIRRRKTAT 74
           L  I+R+ T+ 
Sbjct: 114 LENIKRKVTSV 124

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  111 bits (280), Expect = 9e-32
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 10/66 (15%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA----------DKWEFANENFRRGHRELL 64
           FAK+LLP  +KHNN +SF+RQLN YGF KI +          D+ EF++  F+R    LL
Sbjct: 41  FAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLL 100

Query: 65  TEIRRR 70
            +I+R+
Sbjct: 101 DQIKRK 106

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score = 88.7 bits (220), Expect = 5e-23
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 11/53 (20%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENF 56
           F +++LP YFKH+NF+SFVRQLN YG+ K+              +WEF NE  
Sbjct: 49  FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.95
1hks_A	106	Heat-shock transcription factor; transcription reg	99.95
3hts_B	102	Heat shock transcription factor; transcription reg	99.84
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	90.17
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	85.69
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	84.92
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	83.23
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	82.77
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	82.41
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	82.29
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.2
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	80.82
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.77
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	80.54

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.95  E-value=5.7e-29  Score=200.77  Aligned_cols=71  Identities=49%  Similarity=0.772  Sum_probs=66.9

Q ss_pred             CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc-----------CccceeecCCccCCchhhhccccccC
Q 026263            3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANENFRRGHRELLTEIRRRK   71 (241)
Q Consensus         3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~-----------~~~~ef~h~~F~rg~~~lL~~I~Rkk   71 (241)
                      -+.+|||||+++|+++|||+||+|+||+||+||||+|||+|+.           ++.|+|+||+|+||+|+||..|+||+
T Consensus        42 ~G~sFvV~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~  121 (125)
T 2ldu_A           42 SGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKV  121 (125)
T ss_dssp             TSSEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCT
T ss_pred             CCCEEEEeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCC
Confidence            4689999999999999999999999999999999999999995           36899999999999999999999998


Q ss_pred             CC
Q 026263           72 TA   73 (241)
Q Consensus        72 ~~   73 (241)
                      +.
T Consensus       122 ~~  123 (125)
T 2ldu_A          122 TS  123 (125)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.95  E-value=3.5e-29  Score=196.46  Aligned_cols=68  Identities=44%  Similarity=0.716  Sum_probs=64.7

Q ss_pred             CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc----------CccceeecCCccCCchhhhcccccc
Q 026263            3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV----------ADKWEFANENFRRGHRELLTEIRRR   70 (241)
Q Consensus         3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~----------~~~~ef~h~~F~rg~~~lL~~I~Rk   70 (241)
                      -+.||||||+++|+++|||+||+|+||+||+||||+|||+|+.          ++.|+|+||+|+||+|+||..|+||
T Consensus        29 ~G~sFvI~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           29 DGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCEEEECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence            4679999999999999999999999999999999999999996          3689999999999999999999996

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.84  E-value=2.9e-22  Score=156.44  Aligned_cols=53  Identities=45%  Similarity=0.884  Sum_probs=50.3

Q ss_pred             CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCccccc-----------CccceeecCC
Q 026263            3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANEN   55 (241)
Q Consensus         3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~-----------~~~~ef~h~~   55 (241)
                      -+.+|||||+++|+++|||+||+|+||+||+||||+|||+|+.           +++|||+||+
T Consensus        37 ~G~sfiI~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           37 SGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER  100 (102)
T ss_dssp             TSCSEEESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred             CCCEEEEcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence            4689999999999999999999999999999999999999998           5799999986

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=90.17  E-value=0.92  Score=31.46  Aligned_cols=39  Identities=23%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          116 KFADLSDENAKLRRDNETLSSELAQAKKQCDELITFLTE  154 (241)
Q Consensus       116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~~  154 (241)
                      ....|..+.+.|..+|..|..++..++..+..|-..|..
T Consensus        24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            356788899999999999999998888888877766643

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=85.69  E-value=1.9  Score=29.04  Aligned_cols=32  Identities=22%  Similarity=0.391  Sum_probs=23.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          117 FADLSDENAKLRRDNETLSSELAQAKKQCDEL  148 (241)
Q Consensus       117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~L  148 (241)
                      +..|-.+.+.|++||..|++||..--.++.+|
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskL   36 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKL   36 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            45678889999999999999987655544443

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=84.92  E-value=1.9  Score=25.89  Aligned_cols=28  Identities=32%  Similarity=0.423  Sum_probs=23.7

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          116 KFADLSDENAKLRRDNETLSSELAQAKK  143 (241)
Q Consensus       116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk  143 (241)
                      .++.|.+|+..|++|...|.=|++.+++
T Consensus         3 eiaalkqeiaalkkeiaalkfeiaalkq   30 (33)
T 4dzn_A            3 EIAALKQEIAALKKEIAALKFEIAALKQ   30 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3578899999999999999999888775

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=83.23  E-value=1.6  Score=32.57  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=24.2

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          118 ADLSDENAKLRRDNETLSSELAQAKKQCDELITFLT  153 (241)
Q Consensus       118 a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL~  153 (241)
                      ..+..+.+.|..||..|..++..+++.+..|-.+|.
T Consensus        39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~   74 (87)
T 1hjb_A           39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK   74 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346667777777777777777777766666555554

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=82.77  E-value=2.4  Score=31.49  Aligned_cols=36  Identities=31%  Similarity=0.441  Sum_probs=28.1

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          115 AKFADLSDENAKLRRDNETLSSELAQAKKQCDELIT  150 (241)
Q Consensus       115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~  150 (241)
                      ..+..|..||..|+.++..|..|+..++..+.++-.
T Consensus        43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~   78 (87)
T 1hjb_A           43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE   78 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence            456789999999999999999999998887766544

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=82.41  E-value=3.8  Score=27.91  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=21.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITF  151 (241)
Q Consensus       117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~F  151 (241)
                      ...|..+.+.|..+|..|..++..++..+..|-..
T Consensus        24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~   58 (61)
T 1t2k_D           24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666666666655554433

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=82.29  E-value=4.4  Score=28.01  Aligned_cols=36  Identities=22%  Similarity=0.292  Sum_probs=25.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFL  152 (241)
Q Consensus       117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL  152 (241)
                      ...|..+.+.|..+|..|..++..++..+..|=..|
T Consensus        25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll   60 (63)
T 1ci6_A           25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888888888888877777665554443

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.20  E-value=2.1  Score=28.88  Aligned_cols=30  Identities=20%  Similarity=0.187  Sum_probs=21.6

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          116 KFADLSDENAKLRRDNETLSSELAQAKKQC  145 (241)
Q Consensus       116 ~~a~L~~Ene~Lkren~~L~~EL~~~kk~~  145 (241)
                      .+..|..||+.|+.++..|..++..++.+.
T Consensus        20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355777788888888887777777766644

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=80.82  E-value=1.9  Score=29.68  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          117 FADLSDENAKLRRDNETLSSELAQAKKQCDELITFL  152 (241)
Q Consensus       117 ~a~L~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL  152 (241)
                      ...|..+.+.|..+|..|..++..++..+..|-..|
T Consensus        24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l   59 (62)
T 1jnm_A           24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV   59 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777777777777777777776665544333

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.77  E-value=3.1  Score=28.40  Aligned_cols=31  Identities=35%  Similarity=0.377  Sum_probs=26.7

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          115 AKFADLSDENAKLRRDNETLSSELAQAKKQC  145 (241)
Q Consensus       115 ~~~a~L~~Ene~Lkren~~L~~EL~~~kk~~  145 (241)
                      ..+..|..+|..|+.+...|..|+..++.++
T Consensus        29 ~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           29 KKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5567899999999999999999999888653

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=80.54  E-value=2.5  Score=28.56  Aligned_cols=32  Identities=16%  Similarity=0.133  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026263          121 SDENAKLRRDNETLSSELAQAKKQCDELITFL  152 (241)
Q Consensus       121 ~~Ene~Lkren~~L~~EL~~~kk~~~~Li~FL  152 (241)
                      ..+++.|+.||..|+.++..++++++++-.-|
T Consensus        18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888888888888888888888777764433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	4e-22
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	4e-16

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 85.3 bits (211), Expect = 4e-22
 Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 10/66 (15%)

Query: 15  FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV----------ADKWEFANENFRRGHRELL 64
           FAK+LLP  +KHNN +SF+RQLN YGF KI            D+ EF++  F+R    LL
Sbjct: 41  FAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLL 100

Query: 65  TEIRRR 70
            +I+R+
Sbjct: 101 DQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 69.1 bits (169), Expect = 4e-16
 Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 11/51 (21%)

Query: 15 FAKDLLPNYFKHNNFSSFVRQLNTYGFRKIV-----------ADKWEFANE 54
          F +++LP YFKH+NF+SFVRQLN YG+ K+              +WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.91
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.76

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.91  E-value=9.1e-26  Score=174.96  Aligned_cols=68  Identities=44%  Similarity=0.724  Sum_probs=63.6

Q ss_pred             CCCcEEEecchhhhhhhhccccCCCCccchhhhccccCcccccC----------ccceeecCCccCCchhhhcccccc
Q 026263            3 VAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA----------DKWEFANENFRRGHRELLTEIRRR   70 (241)
Q Consensus         3 ~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~~----------~~~ef~h~~F~rg~~~lL~~I~Rk   70 (241)
                      -+.+|||+|+.+|+++|||+||+|++|+||+||||+|||+|+..          +.++|+||+|+||+|+||..|+||
T Consensus        29 ~G~~fiI~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          29 DGQSFVIQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSCEECSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             CCCEEEEcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCC
Confidence            46799999999999999999999999999999999999999853          478999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.76  E-value=5.4e-20  Score=139.25  Aligned_cols=55  Identities=44%  Similarity=0.852  Sum_probs=49.9

Q ss_pred             CCCCcEEEecchhhhhhhhccccCCCCccchhhhccccCcccccC-----------ccceeecCCc
Q 026263            2 KVAPLLLSGKLLIFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVA-----------DKWEFANENF   56 (241)
Q Consensus         2 ~~~~sFvI~~~~~F~~~vLp~~Fkh~nf~SFvRQLn~YGF~Kv~~-----------~~~ef~h~~F   56 (241)
                      .-+.+|||+|+++|+++|||+||+|++|+||+||||+|||+|+..           +.|||+|+.+
T Consensus        26 ~~G~~f~I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~eF~h~~~   91 (92)
T d2htsa_          26 TSGESIVVPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH   91 (92)
T ss_dssp             TTSSSEEESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CCCCEEEEESCC
T ss_pred             CCCCEEEEeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCCCCEEEecCCC
Confidence            347889999999999999999999999999999999999999863           4799999854