Citrus Sinensis ID: 026266

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
ccccccEEEEcccEEEccccccEEEEEEEEEcccccEEEEEEEEccccEEEEEcccEEEccccEEEEEEEEccccccccccccccEEEEEEEEEccccccccHHHHHHHcccccEEEEEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccc
cccccEEEEcccccccccccEEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEcccccccccccccccEEEEEEEEcccccHHHccHHHHcHcccccEEHcEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccc
mstgellsieplelkfpfelkKQISCSlqlsnktdnYVAFKVkttnpkkycvrpntgivlprstCDIIVTMQaqkeappdmqckdkfllqsvktndgttakDINAEMFNKEAGHVVEECKLRViyvsppqppspvpegseegssprgsvsdnghvnSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRRegkknrggvSFIFVILVGLVGIVLGYVMKKS
mstgellsieplELKFPFELKKQISCslqlsnktdnYVAFkvkttnpkkycvrpntgivlprsTCDIIVTMQAQkeappdmqCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARALISklkdeknnavqqnnklrqdlELLRregkknrggvsfIFVILVGLVGIVLGYVMKKS
MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYvsppqppspvpegseegssprgsvsDNGHVNSaefaaaarafterIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSfifvilvglvgivlgYVMKKS
********IEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQ*************KFLLQSV********KDINAEMFNKEAGHVVEECKLRVIYV******************************************************************************************GGVSFIFVILVGLVGIVLGYVM***
**TGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYV************************************************************************************************FVILVGLVGIVLGYVMKKS
MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPP*********************DNGHVNSAEFAAAARAFTERIEHQDKSTEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
****ELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPP************************************************TEARALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
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MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKKNRGGVSFIFVILVGLVGIVLGYVMKKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
Q9SHC8239 Vesicle-associated protei yes no 0.983 0.991 0.670 2e-87
Q8VZ95256 Vesicle-associated protei no no 0.991 0.933 0.669 2e-86
Q84WW5239 Vesicle-associated protei no no 0.979 0.987 0.603 2e-74
Q9SYC9 571 Vesicle-associated protei no no 0.643 0.271 0.647 3e-57
Q9LVU1220 Vesicle-associated protei no no 0.846 0.927 0.421 2e-48
O82213149 Vesicle-associated protei no no 0.522 0.845 0.682 7e-46
B9DHD7 386 Vesicle-associated protei no no 0.597 0.373 0.554 3e-39
O60119 383 Vesicle-associated membra yes no 0.738 0.464 0.340 5e-17
Q10484319 Uncharacterized protein C no no 0.452 0.341 0.369 2e-13
Q16943260 Vesicle-associated membra N/A no 0.842 0.780 0.282 3e-13
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function desciption
 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 161/240 (67%), Positives = 207/240 (86%), Gaps = 3/240 (1%)

Query: 3   TGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPR 62
           + ELL+I+P++L+FPFELKKQISCSL L NKTDNYVAFKVKTTNPKKYCVRPNTG+V PR
Sbjct: 2   SNELLTIDPVDLQFPFELKKQISCSLYLGNKTDNYVAFKVKTTNPKKYCVRPNTGVVHPR 61

Query: 63  STCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLR 122
           S+ +++VTMQAQKEAP D+QCKDKFLLQ V  + G T KD+  EMF+KEAGH VEE KLR
Sbjct: 62  SSSEVLVTMQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLR 121

Query: 123 VIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEARA 182
           V+YV+PP+PPSPV EGSEEGSSPR SVSDNG  N+++F AA R   +R++ QD S+EARA
Sbjct: 122 VVYVAPPRPPSPVREGSEEGSSPRASVSDNG--NASDFTAAPRFSADRVDAQDNSSEARA 179

Query: 183 LISKLKDEKNNAVQQNNKLRQDLELLRREGKKNR-GGVSFIFVILVGLVGIVLGYVMKKS 241
           L++KL +EKN+AVQ NN+L+Q+L+ LRRE K+++ GG+ F++V+LVGL+G++LGY+MK++
Sbjct: 180 LVTKLTEEKNSAVQLNNRLQQELDQLRRESKRSKSGGIPFMYVLLVGLIGLILGYIMKRT 239
Vesicle-associated protein that binds the oxysterol-binding protein ORP3A and allows its targeting to the ER.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|Q10484|YDFC_SCHPO Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17C9.12 PE=1 SV=2 Back     alignment and function description
>sp|Q16943|VP33_APLCA Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
255576068240 vesicle-associated membrane protein, put 0.995 1.0 0.858 1e-112
356495613241 PREDICTED: vesicle-associated protein 1- 1.0 1.0 0.788 1e-111
224074143241 predicted protein [Populus trichocarpa] 1.0 1.0 0.846 1e-110
388501352239 unknown [Lotus japonicus] 0.991 1.0 0.767 1e-109
356540611241 PREDICTED: vesicle-associated protein 1- 1.0 1.0 0.788 1e-109
356563322241 PREDICTED: vesicle-associated protein 1- 1.0 1.0 0.813 1e-107
449469394241 PREDICTED: vesicle-associated protein 1- 1.0 1.0 0.821 1e-104
357476871242 Vesicle-associated membrane protein-asso 0.987 0.983 0.810 1e-104
356496332241 PREDICTED: vesicle-associated protein 1- 1.0 1.0 0.717 1e-104
357482017243 Vesicle-associated membrane protein [Med 1.0 0.991 0.721 1e-103
>gi|255576068|ref|XP_002528929.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223531631|gb|EEF33458.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/240 (85%), Positives = 227/240 (94%)

Query: 1   MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVL 60
           MSTGELLSI+PLELKFPFELKKQISCSLQLSNKTD+YVAFKVKTTNPKKYCVRPN GIVL
Sbjct: 1   MSTGELLSIDPLELKFPFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNAGIVL 60

Query: 61  PRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECK 120
           PRSTCD+IVTMQAQKEAPPD+QCKDKFLLQSVKT+DG +AKDINAEMFNKEAGHVVEECK
Sbjct: 61  PRSTCDVIVTMQAQKEAPPDLQCKDKFLLQSVKTHDGASAKDINAEMFNKEAGHVVEECK 120

Query: 121 LRVIYVSPPQPPSPVPEGSEEGSSPRGSVSDNGHVNSAEFAAAARAFTERIEHQDKSTEA 180
           LRV+YVSPPQPPSPVPEGSEE SSPRGSVSDNG+V  +EF+ AA+AF ER E QDKS+EA
Sbjct: 121 LRVLYVSPPQPPSPVPEGSEEESSPRGSVSDNGNVTGSEFSNAAKAFGERFETQDKSSEA 180

Query: 181 RALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNRGGVSFIFVILVGLVGIVLGYVMKK 240
           ++LISKL +EKNNA+QQNNKLRQ+LELL+REG KNR GVSFIFVI VGL+GI+LGY+MKK
Sbjct: 181 KSLISKLNEEKNNAIQQNNKLRQELELLKREGNKNRAGVSFIFVIFVGLLGIILGYLMKK 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356495613|ref|XP_003516669.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|224074143|ref|XP_002304271.1| predicted protein [Populus trichocarpa] gi|222841703|gb|EEE79250.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388501352|gb|AFK38742.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356540611|ref|XP_003538781.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356563322|ref|XP_003549913.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|449469394|ref|XP_004152405.1| PREDICTED: vesicle-associated protein 1-2-like [Cucumis sativus] gi|449513273|ref|XP_004164281.1| PREDICTED: vesicle-associated protein 1-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357476871|ref|XP_003608721.1| Vesicle-associated membrane protein-associated protein [Medicago truncatula] gi|355509776|gb|AES90918.1| Vesicle-associated membrane protein-associated protein [Medicago truncatula] gi|388505190|gb|AFK40661.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356496332|ref|XP_003517022.1| PREDICTED: vesicle-associated protein 1-2-like [Glycine max] Back     alignment and taxonomy information
>gi|357482017|ref|XP_003611294.1| Vesicle-associated membrane protein [Medicago truncatula] gi|355512629|gb|AES94252.1| Vesicle-associated membrane protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.991 0.933 0.537 8.8e-63
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.983 0.991 0.525 2.1e-61
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.518 0.523 0.714 4.2e-57
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.518 0.838 0.68 7.3e-43
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.502 0.55 0.586 3.2e-41
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.502 0.189 0.628 7.9e-39
TAIR|locus:2025585 386 VAP27-2 "vamp/synaptobrevin-as 0.489 0.305 0.618 2.2e-38
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.485 0.483 0.344 3.4e-18
UNIPROTKB|Q5U511243 vapb "LOC495400 protein" [Xeno 0.481 0.477 0.357 1.1e-17
UNIPROTKB|G4N022285 MGG_06183 "Uncharacterized pro 0.489 0.414 0.35 2.3e-16
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 130/242 (53%), Positives = 162/242 (66%)

Query:     1 MSTGELLSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVL 60
             MS  ELL++EPL+L+FPFELKKQISCSL L+NKTDN VAFKVKTTNPKKYCVRPNTG+VL
Sbjct:    17 MSNSELLTVEPLDLQFPFELKKQISCSLYLTNKTDNNVAFKVKTTNPKKYCVRPNTGVVL 76

Query:    61 PRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECK 120
             PRSTC+++VTMQAQKEAP DMQCKDKFLLQ V  + G TAK++  EMF+KEAGH VEE K
Sbjct:    77 PRSTCEVLVTMQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETK 136

Query:   121 LRVIYXXXXXXXXXXXXXXXXXXXXXXXXXDNGHVNSXXXXXXXXXXXXXIEHQDKSTEA 180
             LRV Y                         DNGH +                HQ+ ++EA
Sbjct:   137 LRVTYVAPPRPPSPVHEGSEEGSSPRASVSDNGHGSEFSFERFIVDNKAG--HQENTSEA 194

Query:   181 RALISKLKDEKNNAVQQNNKLRQDLELLRREGKKNR-GGVSXXXXXXXXXXXXXXXYVMK 239
             RALI+KL +EK +A+Q NN+L+++L+ LRRE KK++ GG+                Y+MK
Sbjct:   195 RALITKLTEEKQSAIQLNNRLQRELDQLRRESKKSQSGGIPFMYVLLVGLIGLILGYIMK 254

Query:   240 KS 241
             ++
Sbjct:   255 RT 256
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0000326 "protein storage vacuole" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0016021 "integral to membrane" evidence=IDA
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006605 "protein targeting" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006886 "intracellular protein transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0007033 "vacuole organization" evidence=RCA
GO:0010359 "regulation of anion channel activity" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U511 vapb "LOC495400 protein" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|G4N022 MGG_06183 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SHC8VAP12_ARATHNo assigned EC number0.67080.98340.9916yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_III0553
hypothetical protein (242 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 3e-33
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 1e-20
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score =  115 bits (291), Expect = 3e-33
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 6   LLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRST 64
           LL+I+P   L F     KQ + +L L+N +D  VAFKVKTTNPK+Y VRPN GI+ P  +
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 65  CDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDG-TTAKDINAEMFNKEAG 113
             I +T Q   + P D + KDKF++Q  +  D    AK+     +   A 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNGAP 109

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.97
KOG0439218 consensus VAMP-associated protein involved in inos 99.96
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.91
PF14874102 PapD-like: Flagellar-associated PapD-like 98.7
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.98
PRK10884206 SH3 domain-containing protein; Provisional 96.27
PRK09918230 putative fimbrial chaperone protein; Provisional 94.19
PF14646426 MYCBPAP: MYCBP-associated protein family 93.75
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 93.35
PRK09926246 putative chaperone protein EcpD; Provisional 93.34
PRK15249253 fimbrial chaperone protein StbB; Provisional 93.11
PRK15211229 fimbrial chaperone protein PefD; Provisional 92.95
PRK11385236 putativi pili assembly chaperone; Provisional 92.74
PRK15299227 fimbrial chaperone protein StiB; Provisional 92.68
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 92.59
PRK10132108 hypothetical protein; Provisional 92.35
PF0595794 DUF883: Bacterial protein of unknown function (DUF 91.91
PRK15246233 fimbrial assembly chaperone StbE; Provisional 91.55
PF0600572 DUF904: Protein of unknown function (DUF904); Inte 91.48
PRK15290243 lfpB fimbrial chaperone protein; Provisional 91.22
PRK15295226 fimbrial assembly chaperone SthB; Provisional 91.15
PRK15192234 fimbrial chaperone BcfG; Provisional 90.63
PF1077971 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly 90.13
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 87.93
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 87.64
COG307479 Uncharacterized protein conserved in bacteria [Fun 86.98
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 86.43
PF06280112 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 86.41
PRK15188228 fimbrial chaperone protein BcfB; Provisional 86.36
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 86.32
PF04420161 CHD5: CHD5-like protein; InterPro: IPR007514 Membe 86.13
PRK15195229 fimbrial chaperone protein FimC; Provisional 86.01
PRK1542279 septal ring assembly protein ZapB; Provisional 85.93
TIGR03079399 CH4_NH3mon_ox_B methane monooxygenase/ammonia mono 85.68
PRK15254239 fimbrial chaperone protein StdC; Provisional 85.57
PRK15224237 pili assembly chaperone protein SafB; Provisional 85.1
PF1112062 DUF2636: Protein of unknown function (DUF2636); In 84.31
PRK13169110 DNA replication intiation control protein YabA; Re 83.53
PRK10404101 hypothetical protein; Provisional 83.53
PRK15218226 fimbrial chaperone protein PegB; Provisional 83.49
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 83.42
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 83.34
TIGR0244965 conserved hypothetical protein TIGR02449. Members 82.9
PF04744381 Monooxygenase_B: Monooxygenase subunit B protein; 82.73
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 82.62
PF0218345 HALZ: Homeobox associated leucine zipper; InterPro 81.65
KOG4343 655 consensus bZIP transcription factor ATF6 [Transcri 81.35
PRK13169110 DNA replication intiation control protein YabA; Re 81.3
PRK10884206 SH3 domain-containing protein; Provisional 80.99
PRK15285250 putative fimbrial chaperone protein StfD; Provisio 80.99
PRK00888105 ftsB cell division protein FtsB; Reviewed 80.97
PF0537755 FlaC_arch: Flagella accessory protein C (FlaC); In 80.49
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.97  E-value=1.7e-31  Score=222.39  Aligned_cols=119  Identities=34%  Similarity=0.622  Sum_probs=110.9

Q ss_pred             eEEeCCeeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCC-CCCCCCC
Q 026266            7 LSIEPLELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAP-PDMQCKD   85 (241)
Q Consensus         7 l~i~P~eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p-~~~~~kd   85 (241)
                      |+|+| ++.|..|+.+..++.+.|.|++..+|+||||||+|+.||||||.|+|.|++++.|.|+||++++.| +|.+|||
T Consensus         3 veisp-~~~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISP-QTTFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecC-ceEEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            57788 567777999999999999999999999999999999999999999999999999999999999988 8999999


Q ss_pred             eEEEEEEecCCCCCcccchhhhhccccCceeeEEEeEEEEeC
Q 026266           86 KFLLQSVKTNDGTTAKDINAEMFNKEAGHVVEECKLRVIYVS  127 (241)
Q Consensus        86 KFlVqs~~~~~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~  127 (241)
                      |||||+...+.+.+..|+. ++|...++.-|+++||||+|..
T Consensus        82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse  122 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSE  122 (242)
T ss_pred             eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeec
Confidence            9999999999887778884 9999988888999999999983

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK10132 hypothetical protein; Provisional Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [] Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein Back     alignment and domain information
>PRK15195 fimbrial chaperone protein FimC; Provisional Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information
>PRK15224 pili assembly chaperone protein SafB; Provisional Back     alignment and domain information
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process [] Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PRK10404 hypothetical protein; Provisional Back     alignment and domain information
>PRK15218 fimbrial chaperone protein PegB; Provisional Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>TIGR02449 conserved hypothetical protein TIGR02449 Back     alignment and domain information
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related [] Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox [] Back     alignment and domain information
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription] Back     alignment and domain information
>PRK13169 DNA replication intiation control protein YabA; Reviewed Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>PRK15285 putative fimbrial chaperone protein StfD; Provisional Back     alignment and domain information
>PRK00888 ftsB cell division protein FtsB; Reviewed Back     alignment and domain information
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 3e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 3e-12
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 2e-11
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 6e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 1e-10
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 6e-07
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 7/123 (5%)
Query: 5   ELLSIEP-LELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRS 63
           ++LS+EP  ELKF       ++ +L+L N TD  V FKVKTT P++YCVRPN+GI+   +
Sbjct: 8   QVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGA 67
Query: 64  TCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEECKLR 122
           + ++ V +Q   +  P+ + K KF++QS+     T+    + E   KEA    + + KLR
Sbjct: 68  SINVSVMLQPF-DYDPNEKSKHKFMVQSMFAPTDTS----DMEAVWKEAKPEDLMDSKLR 122
Query: 123 VIY 125
            ++
Sbjct: 123 CVF 125
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 3e-46
2cri_A147 Vesicle-associated membrane protein-associated pro 2e-39
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 3e-37
1z9l_A128 Vesicle-associated membrane protein-associated pro 4e-36
1m1s_A116 WR4; structural genomics, major sperm protein, bio 5e-30
1row_A109 SSP-19, MSP-domain protein like family member; bet 8e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  150 bits (379), Expect = 3e-46
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 1   MSTGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIV 59
           +  G LL I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEE 118
            P ++ DIIV+          +  +D+FL+ + +    +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 CKLRVIYVSPPQPPSPVPEGSEEG 142
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 100.0
2cri_A147 Vesicle-associated membrane protein-associated pro 100.0
1z9l_A128 Vesicle-associated membrane protein-associated pro 100.0
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 100.0
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.96
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.96
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.4
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 98.21
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 98.13
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.63
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.76
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 96.5
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 93.59
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 92.7
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 92.46
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 91.34
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 90.88
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 89.64
1yew_A382 Particulate methane monooxygenase, B subunit; memb 89.42
2r39_A118 FIXG-related protein; structural GE PSI-2, protein 88.43
4ay0_A218 Chaperone protein CAF1M; amino acid motifs, bacter 88.29
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 86.86
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 86.16
3rfr_A419 PMOB; membrane, oxidoreductase; 2.68A {Methylocyst 85.84
2jee_A81 YIIU; FTSZ, septum, coiled-coil, cell division, ce 85.09
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 85.03
3gfu_C224 Chaperone protein FAEE; immunoglobulin like fold, 84.45
1gd2_E70 Transcription factor PAP1; basic leucine zipper, p 81.58
2oqq_A42 Transcription factor HY5; homodimer leucine zipper 80.09
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
Probab=100.00  E-value=1.4e-38  Score=258.36  Aligned_cols=134  Identities=31%  Similarity=0.478  Sum_probs=122.5

Q ss_pred             CCcceEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCCC
Q 026266            3 TGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPDM   81 (241)
Q Consensus         3 ~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~~   81 (241)
                      .+++|.|+|. +|.|.++++++++|.|+|+|+++++||||||||+|++||||||.|+|+||++++|.|+||++.+    .
T Consensus        15 ~~~~L~i~P~~~L~F~~~~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~V~V~lq~~~~----~   90 (152)
T 1wic_A           15 KGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGLT----V   90 (152)
T ss_dssp             CCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSSC----C
T ss_pred             CCCeEEECCCCeEEEeCCCCceEEEEEEEEcCCCCeEEEEEECCCCCceeecCCCcEECCCCeEEEEEEecCccc----C
Confidence            4689999998 9999999999999999999999999999999999999999999999999999999999999753    2


Q ss_pred             CCCCeEEEEEEecC--CCCCcccchhhhhccccCceeeEEEeEEEEeCCCCCCCCCCCCCCC
Q 026266           82 QCKDKFLLQSVKTN--DGTTAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGSEE  141 (241)
Q Consensus        82 ~~kdKFlVqs~~~~--~~~~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~~s~~~e~~e~  141 (241)
                      +|+|||+||++.++  ++.+..|+. ++|++..+..++++||||+|+.+++|++++..|.++
T Consensus        91 ~~kDKFlVqs~~v~~~~~~~~~d~~-~~wk~~~~~~i~e~kLrv~f~~~~~p~s~~~~g~~~  151 (152)
T 1wic_A           91 SAQDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGPSS  151 (152)
T ss_dssp             CSSCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCCSC
T ss_pred             CCCCEEEEEEEEcCCcCCCChhhHH-HHHhccCCCceEEEEEEEEECCCCCCCCccccCCCC
Confidence            78999999999999  566677885 899998888999999999999999998888777554
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} Back     alignment and structure
>4ay0_A Chaperone protein CAF1M; amino acid motifs, bacterial capsules, bacterial proteins, gene expression regulation, molecular chaperones, binding; 1.52A {Yersinia pestis} PDB: 1p5v_A 1p5u_A 1z9s_A 2os7_A 3dos_A 3dpb_A 3dsn_A 4b0m_M 4az8_A 4ayf_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A Back     alignment and structure
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} Back     alignment and structure
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>3gfu_C Chaperone protein FAEE; immunoglobulin like fold, chaperone, fimbrium, immunoglobulin domain, periplasm, plasmid, cell adhesion; 1.99A {Escherichia coli} PDB: 3gew_B 3f65_A 3f6i_A 3f6l_A Back     alignment and structure
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Back     alignment and structure
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 3e-49
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 6e-38
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 5e-28
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 2e-27
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  157 bits (397), Expect = 3e-49
 Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 1   MSTGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIV 59
           +  G LL I P  EL F      +    + L+N T N VAFKV+TT P+KY V+P+    
Sbjct: 13  VFKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSC 72

Query: 60  LPRSTCDIIVTMQAQKEAPPDMQCKDKFLLQSVKTNDGTTAKDINAEMFNKEA-GHVVEE 118
            P ++ DIIV+          +  +D+FL+ + +    +         F KE   + V E
Sbjct: 73  DPGASIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVME 128

Query: 119 CKLRVIYVSPPQPPSPVPEGSEEG 142
            +LR   V   +P S +  G   G
Sbjct: 129 HRLRCHTVESSKPNSLMLSGPSSG 152
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 100.0
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.98
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.93
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.92
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 95.78
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 95.17
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 93.94
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 93.88
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 89.07
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 82.35
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 81.42
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 80.58
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 80.08
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-35  Score=235.43  Aligned_cols=133  Identities=30%  Similarity=0.457  Sum_probs=116.8

Q ss_pred             CCCcceEEeCC-eeeEeccCCCeeeEEEEEEcCCCCeEEEEeeecCCCceEEeCCCeeeCCCCeEEEEEEecccccCCCC
Q 026266            2 STGELLSIEPL-ELKFPFELKKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGIVLPRSTCDIIVTMQAQKEAPPD   80 (241)
Q Consensus         2 ~~~~ll~i~P~-eL~F~~~~~~~~~~~l~L~N~s~~~vaFKVKTT~p~~Y~VrP~~G~i~P~~s~~V~V~lq~~~~~p~~   80 (241)
                      ..|+||.|+|. +|+|.+++++.++|.|+|+|+++++||||||||+|++|+|||++|+|+||++++|.|++++.    +.
T Consensus        14 ~~~~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~----~~   89 (152)
T d1wica_          14 FKGPLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGG----LT   89 (152)
T ss_dssp             BCCSSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSS----SC
T ss_pred             cCCCeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCC----Cc
Confidence            45689999996 79999999999999999999999999999999999999999999999999999999999864    23


Q ss_pred             CCCCCeEEEEEEecCCCC--CcccchhhhhccccCceeeEEEeEEEEeCCCCCCCCCCCCC
Q 026266           81 MQCKDKFLLQSVKTNDGT--TAKDINAEMFNKEAGHVVEECKLRVIYVSPPQPPSPVPEGS  139 (241)
Q Consensus        81 ~~~kdKFlVqs~~~~~~~--~~~d~~~~~f~~~~~~~i~~~kL~v~~~~~~~~~s~~~e~~  139 (241)
                      ..|+|||+|+++.++++.  +..|+ .+||+...+..++++||||+|+.++++++++..+.
T Consensus        90 ~~~kdKFli~~~~v~~~~~~~~~d~-~~~wk~~~~~~i~~~kLkv~~~~~~~p~s~~~~~~  149 (152)
T d1wica_          90 VSAQDRFLIMAAEMEQSSGTGPAEL-SQFWKEVPRNKVMEHRLRCHTVESSKPNSLMLSGP  149 (152)
T ss_dssp             CCSSCCEEEEEEECCSSCCCSHHHH-HHHHHHSCTTTCEEEEECBCCCCSCSSSSSCCCCC
T ss_pred             ccCCCcEEEEEEEeCCCCCCCccCH-HHHhhcCCcCcEEEEEEEEEEeCCCCCCCccccCC
Confidence            578999999999997644  34566 48999888889999999999999888777665443
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure