Citrus Sinensis ID: 026269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRRTQAA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcccccEEEEEEEEEEEEcccEEEEEEEccEEEEccEEEEcccccEEEEEEEEEcccEEEEEcccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccEEcccccHEEEEccccEEEEEEEEEEEcccccEEEEEEEEEEccccEEEEEEcccEEEEccEEEcccccccEEEEEEEEccEEEEcccccccEEEEEEccccc
Coil and Loop (DISEMBL)
MAAAAFSltlsspvskphtfctsyyskpinasfsaslpckrsprTALKIVRAVsisspdlrtgpdDLVASILSKVnqsdggvslAKEEHKEVAEVAQELQKYCVeapvkcplifgewdvvycsvptspgggyrsafgRLFFKTKEMIqaveapdtvrnkvsftalgfldgevSLKGKLNALDEKWIQvvfeppelkvgglefryggqseVKLQITYIDEKirlglgsrgslfVFQRRTQAA
Flexible Loop (DISEMBL)
MAAAAFSltlsspvskpHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRavsisspdlrtgPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQaveapdtvrnKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIrlglgsrgslfvfqrrtqaa
Low Complexity Region (SEG)
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLakeehkevaevaqeLQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRRTQAA
Disordered region (IsUnstruct)
*****************HTFCTSYYSKPINASFSASLPC*****TALKIVRAVS**************************************AEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVF*******
Disordered Region (DISOPRED)
********************************************************************ASILSKVNQ*************EVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPG*GYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFV*QRR****
Disordered Region (DISEMBL)
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRRTQAA
Disordered Region (DISPRO)
*****************************NASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRRTQAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q941D3	239	Probable plastid-lipid-as	yes	no	0.970	0.979	0.659	8e-87
Q9LU85	242	Probable plastid-lipid-as	no	no	0.655	0.652	0.2	0.0007

>sp|Q941D3|PAP8_ARATH Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=2 SV=1

 Score =  320 bits (819), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/241 (65%), Positives = 194/241 (80%), Gaps = 7/241 (2%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
           MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct: 1   MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 176
           W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL G
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTG 177

Query: 177 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 236
           KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+R
Sbjct: 178 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRR 237

Query: 237 R 237
           R
Sbjct: 238 R 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU85|PAP4_ARATH Probable plastid-lipid-associated protein 4, chloroplastic OS=Arabidopsis thaliana GN=PAP4 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/170 (20%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 67  LVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYC-VEAPVKCPLIFGEWDVVYCSVP 125
           L   +L  +   + G + + ++   + ++A++++     + P+K  L+ G+W+++Y +  
Sbjct: 74  LKQELLEAIEPLERGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTT-- 131

Query: 126 TSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKW 185
                    A    F ++    Q++   DT++ + +     F +   S+ G +  L+ K 
Sbjct: 132 ---SASILQAKKPRFLRSITNYQSINV-DTLKVQ-NMETWPFYN---SVTGDIKPLNSKK 183

Query: 186 IQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQ 235
           + V  +  ++ +G +  +    +  +L+ITY+DE++RL  G +G+LF+ +
Sbjct: 184 VAVKLQVFKI-LGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILK 232

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
449441978	248	PREDICTED: probable plastid-lipid-associ	0.879	0.854	0.744	3e-88
255574115	304	structural molecule, putative [Ricinus c	0.875	0.694	0.75	5e-88
225429807	238	PREDICTED: probable plastid-lipid-associ	0.954	0.966	0.680	8e-88
388517989	234	unknown [Medicago truncatula]	0.946	0.974	0.685	1e-85
15241221	239	putative plastid-lipid-associated protei	0.970	0.979	0.659	4e-85
297808055	240	hypothetical protein ARALYDRAFT_910032 [	0.975	0.979	0.651	5e-85
349892287	208	plastid lipid-associated protein, partia	0.834	0.966	0.725	1e-82
224121212	174	predicted protein [Populus trichocarpa]	0.721	1.0	0.827	3e-80
238481317	235	putative plastid-lipid-associated protei	0.908	0.931	0.646	6e-77
346466463	230	hypothetical protein [Amblyomma maculatu	0.834	0.873	0.698	1e-76

>gi|449441978|ref|XP_004138759.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Cucumis sativus] gi|449499565|ref|XP_004160851.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic-like [Cucumis sativus]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 163/219 (74%), Positives = 185/219 (84%), Gaps = 7/219 (3%)

Query: 26  SKPINASFSASLPCKR----SP---RTALKIVRAVSISSPDLRTGPDDLVASILSKVNQS 78
           SK +  + ++S PC      SP   R    I  +VSIS P +RTGPDDLVASILSKV  S
Sbjct: 29  SKFLTPTSTSSFPCHSISISSPFHRRKPFGIQASVSISDPQVRTGPDDLVASILSKVTGS 88

Query: 79  DGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGR 138
           D GV L++E+HKEVAEVA+ELQKYCV  PVKCPLIFG WDVVYCSVPTSPGGGYRSA GR
Sbjct: 89  DRGVLLSEEQHKEVAEVAEELQKYCVNEPVKCPLIFGAWDVVYCSVPTSPGGGYRSAVGR 148

Query: 139 LFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVG 198
           +FFKTKEMIQAVEAPDT++NKVSF+ALGFLDG+VSL GKL ALD+KWI+VVFE PELKVG
Sbjct: 149 IFFKTKEMIQAVEAPDTIKNKVSFSALGFLDGQVSLTGKLTALDDKWIRVVFESPELKVG 208

Query: 199 GLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRR 237
           GLEF+YGG+SEV+LQITYID+K+RLG GSRGSLFVFQRR
Sbjct: 209 GLEFQYGGESEVQLQITYIDDKVRLGKGSRGSLFVFQRR 247

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574115|ref|XP_002527973.1| structural molecule, putative [Ricinus communis] gi|223532599|gb|EEF34385.1| structural molecule, putative [Ricinus communis]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 162/216 (75%), Positives = 185/216 (85%), Gaps = 5/216 (2%)

Query: 27  KPINASFSASLPCKR----SPRTALKIVRAVSISSPDLRTG-PDDLVASILSKVNQSDGG 81
           KP+  +  A LP +R    S + + +I+ +VSISS ++RTG PDDLVASI+SKV Q+DGG
Sbjct: 88  KPVILASHAPLPARRYYYCSQKKSPRILCSVSISSSEVRTGRPDDLVASIISKVTQTDGG 147

Query: 82  VSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFF 141
           V+L KEEH+EV+EVAQ+LQ YCV  PVKCPLIFGEWDVVYCS PTSPGGGYRSAFGRLFF
Sbjct: 148 VTLTKEEHEEVSEVAQQLQSYCVAEPVKCPLIFGEWDVVYCSRPTSPGGGYRSAFGRLFF 207

Query: 142 KTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLE 201
           KTKEMIQAVEAPDTVRNKVSF+  GFL+GEVSLKG+L  LDE WIQV+FE P+LKVG LE
Sbjct: 208 KTKEMIQAVEAPDTVRNKVSFSLFGFLNGEVSLKGQLRVLDESWIQVIFEAPQLKVGALE 267

Query: 202 FRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRR 237
            +YGGQSEVKLQITYID+KIRLG GSRGSLFVFQRR
Sbjct: 268 LQYGGQSEVKLQITYIDDKIRLGKGSRGSLFVFQRR 303

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429807|ref|XP_002282879.1| PREDICTED: probable plastid-lipid-associated protein 8, chloroplastic [Vitis vinifera] gi|296081777|emb|CBI20782.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (843), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 160/235 (68%), Positives = 187/235 (79%), Gaps = 5/235 (2%)

Query: 2   AAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLR 61
           +A  FS   +   SKP T          N+    S+P  R      ++  ++S++SP++R
Sbjct: 4   SAVLFSSVRACEFSKPQTLIPRS-----NSPLIVSIPLHRRRHKNGRVFASISVTSPEVR 58

Query: 62  TGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVY 121
           TGPDDLVASILSKV Q+D GV L K++HKEVAEVAQELQKYCV  PVKCPLIFGEWDVVY
Sbjct: 59  TGPDDLVASILSKVAQTDRGVLLTKDKHKEVAEVAQELQKYCVTEPVKCPLIFGEWDVVY 118

Query: 122 CSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNAL 181
           CS PTSPGGGYR+AFGRLFFK KEMIQ VEAPD VRNKV F+ALGFLD EVSLKGKL AL
Sbjct: 119 CSNPTSPGGGYRNAFGRLFFKAKEMIQVVEAPDIVRNKVHFSALGFLDVEVSLKGKLKAL 178

Query: 182 DEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 236
           D+KWIQVVFEPPEL++G LEF+YGG+SEVKL+ITYID+++RLG GSRGSLFVF+R
Sbjct: 179 DDKWIQVVFEPPELRLGALEFQYGGESEVKLEITYIDDRVRLGKGSRGSLFVFER 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517989|gb|AFK47056.1| unknown [Medicago truncatula]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/235 (68%), Positives = 191/235 (81%), Gaps = 7/235 (2%)

Query: 2   AAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALKIVRAVSISSPDLR 61
           +A+AF L  SS   + H    +  + P + SF+   P +++   +L +  +VSIS+ D+R
Sbjct: 6   SASAFRLVPSSFEIRSH----NNNNFPTSKSFNIRFPRRKN---SLCVSASVSISNTDVR 58

Query: 62  TGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVY 121
           TGP+DLVAS+LSKV Q+DGGV L KEEHKEVAEV QELQKYCV+ PVKCPLIFGEWDVVY
Sbjct: 59  TGPNDLVASLLSKVVQTDGGVLLQKEEHKEVAEVVQELQKYCVKEPVKCPLIFGEWDVVY 118

Query: 122 CSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNAL 181
           CS PTSPGGGYRSA GR+FFKTKEM+Q VEAPD VRNK++FTALGFLDGEVSLKG L AL
Sbjct: 119 CSQPTSPGGGYRSALGRVFFKTKEMVQVVEAPDVVRNKIAFTALGFLDGEVSLKGTLKAL 178

Query: 182 DEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 236
           D +WIQVVFE PELK+G  + +YGGQSEVKL+ITY+DEKIRLGLGSR SLFVF+R
Sbjct: 179 DTEWIQVVFEAPELKLGSWKGQYGGQSEVKLRITYVDEKIRLGLGSRDSLFVFRR 233

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241221|ref|NP_197494.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana] gi|75163992|sp|Q941D3.1|PAP8_ARATH RecName: Full=Probable plastid-lipid-associated protein 8, chloroplastic; AltName: Full=Fibrillin-8; Flags: Precursor gi|15529232|gb|AAK97710.1| AT5g19940/F28I16_90 [Arabidopsis thaliana] gi|16974385|gb|AAL31118.1| AT5g19940/F28I16_90 [Arabidopsis thaliana] gi|21592750|gb|AAM64699.1| unknown [Arabidopsis thaliana] gi|332005386|gb|AED92769.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 159/241 (65%), Positives = 194/241 (80%), Gaps = 7/241 (2%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
           MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct: 1   MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 176
           W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL G
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTG 177

Query: 177 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 236
           KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+R
Sbjct: 178 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRR 237

Query: 237 R 237
           R
Sbjct: 238 R 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808055|ref|XP_002871911.1| hypothetical protein ARALYDRAFT_910032 [Arabidopsis lyrata subsp. lyrata] gi|297317748|gb|EFH48170.1| hypothetical protein ARALYDRAFT_910032 [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (819), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/241 (65%), Positives = 194/241 (80%), Gaps = 6/241 (2%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCKRSPRTALK----IVRAVSIS 56
           MAAAA SLT++S +S+P T   S  SK  N     S+P K   R+  +    +V +VS  
Sbjct: 1   MAAAASSLTIASSLSEPRTQIHS--SKRSNLPLQYSIPYKAVTRSRTRRLGLVVSSVSAP 58

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 59  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 118

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 176
           W+VVYCS PTSPGGGYRS  GRLFFKTKEM+QA++APD VRNKVS  A GFLDG+VSL G
Sbjct: 119 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMVQAIDAPDIVRNKVSINAFGFLDGDVSLTG 178

Query: 177 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 236
           KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+R
Sbjct: 179 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRR 238

Query: 237 R 237
           R
Sbjct: 239 R 239

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|349892287|gb|AEQ20879.1| plastid lipid-associated protein, partial [Eriobotrya japonica]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 148/204 (72%), Positives = 172/204 (84%), Gaps = 3/204 (1%)

Query: 34  SASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVA 93
           S S  C+R+    L+I+ +VS+S P +RTGP++L ASILSKV  SD GV L +E+ KEVA
Sbjct: 4   SQSHSCRRN---TLRILASVSVSDPGVRTGPEELSASILSKVTNSDRGVLLKEEQQKEVA 60

Query: 94  EVAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAP 153
           + A+ELQ YCV  PVKCPLIFG+WDVVYCSVPTSPGGGYRS  GRLF KTKEMIQ +EAP
Sbjct: 61  KEAEELQNYCVSEPVKCPLIFGDWDVVYCSVPTSPGGGYRSTLGRLFLKTKEMIQVIEAP 120

Query: 154 DTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQ 213
           D V+NKVSF+  GFLDGEVSL GKL ALD+KWIQV+FEPPELKVG L+FRYGG+SEVKLQ
Sbjct: 121 DIVKNKVSFSIFGFLDGEVSLTGKLKALDDKWIQVIFEPPELKVGALDFRYGGESEVKLQ 180

Query: 214 ITYIDEKIRLGLGSRGSLFVFQRR 237
           ITYID+K+RLG GS+GSLFVFQRR
Sbjct: 181 ITYIDDKVRLGKGSKGSLFVFQRR 204

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121212|ref|XP_002330771.1| predicted protein [Populus trichocarpa] gi|222872573|gb|EEF09704.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 144/174 (82%), Positives = 159/174 (91%)

Query: 64  PDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGEWDVVYCS 123
           PDDLVASILSKV ++D GVSL KE+ +EV  VAQELQKYCV  PV+CPLIFGEWDVVYCS
Sbjct: 1   PDDLVASILSKVTETDRGVSLTKEQQEEVTRVAQELQKYCVAEPVRCPLIFGEWDVVYCS 60

Query: 124 VPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDE 183
            PTSPGGGYRSAFGRL F+TKEMIQAVEAPDTV+NKVSF+ALGFLDGEVSLKG+L ALD+
Sbjct: 61  NPTSPGGGYRSAFGRLVFRTKEMIQAVEAPDTVKNKVSFSALGFLDGEVSLKGRLKALDD 120

Query: 184 KWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQRR 237
            WIQV+FE P+LKVG LEF+YGG+SEVKL+ITYIDEKIRLG GSRGSLFVFQRR
Sbjct: 121 SWIQVIFEAPQLKVGSLEFQYGGESEVKLKITYIDEKIRLGKGSRGSLFVFQRR 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481317|ref|NP_001154722.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana] gi|332005387|gb|AED92770.1| putative plastid-lipid-associated protein 8 [Arabidopsis thaliana]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 179/226 (79%), Gaps = 7/226 (3%)

Query: 1   MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
           MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct: 1   MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query: 57  SPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCVEAPVKCPLIFGE 116
           + +LRTGPDDL++++LSKV  SDGGV+L+ E+HKEVA+VA ELQKYCV+ PVK PLIFG+
Sbjct: 58  NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query: 117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 176
           W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL G
Sbjct: 118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTG 177

Query: 177 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIR 222
           KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+R
Sbjct: 178 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLR 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346466463|gb|AEO33076.1| hypothetical protein [Amblyomma maculatum]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 141/202 (69%), Positives = 166/202 (82%), Gaps = 1/202 (0%)

Query: 35  ASLPCKRSPRTALKIVRAVSISSPDLRTGPDDLVASILSKVNQSDGGVSLAKEEHKEVAE 94
           +S+  +   +  + IV A SIS+       DDLVASILSKV  +D GV L KE HKEVA+
Sbjct: 28  SSILLRHHHQQKIWIVHA-SISAQPAVAASDDLVASILSKVRGTDRGVQLPKEGHKEVAD 86

Query: 95  VAQELQKYCVEAPVKCPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPD 154
           +A+EL KYCV  PVKCPLIFGEWDV+YCS PTSPGGGYRSAFGRL FKT EM+Q VE+PD
Sbjct: 87  IAKELGKYCVNQPVKCPLIFGEWDVLYCSNPTSPGGGYRSAFGRLIFKTNEMMQVVESPD 146

Query: 155 TVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQI 214
            +RNKVSF+ALGF+DGEVSLKGKLN +D+KWI+V+FEPPELK+G L F+YGG+SEVKL+I
Sbjct: 147 VIRNKVSFSALGFIDGEVSLKGKLNVIDDKWIKVIFEPPELKIGSLGFQYGGESEVKLEI 206

Query: 215 TYIDEKIRLGLGSRGSLFVFQR 236
           TY+DEKIRLG GSRGSLFVF R
Sbjct: 207 TYVDEKIRLGKGSRGSLFVFLR 228

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
TAIR|locus:2147720	239	AT5G19940 [Arabidopsis thalian	0.970	0.979	0.622	1.1e-73

TAIR|locus:2147720 AT5G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 150/241 (62%), Positives = 182/241 (75%)

Query:     1 MAAAAFSLTLSSPVSKPHTFCTSYYSKPINASFSASLPCK----RSPRTALKIVRAVSIS 56
             MAA A SLT++S  S+P T   S  S+ +N     S+P K    RS R  L +V +VS  
Sbjct:     1 MAATASSLTIASSFSEPRTQIHS--SRRLNLPLQYSIPYKVLRSRSRRLGL-VVSSVSAP 57

Query:    57 SPDLRTGPDDLVASILSKVNQSDGGVSLXXXXXXXXXXXXXXLQKYCVEAPVKCPLIFGE 116
             + +LRTGPDDL++++LSKV  SDGGV+L              LQKYCV+ PVK PLIFG+
Sbjct:    58 NVELRTGPDDLISTLLSKVANSDGGVTLSPEQHKEVAQVAGELQKYCVKEPVKNPLIFGD 117

Query:   117 WDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKG 176
             W+VVYCS PTSPGGGYRS  GRLFFKTKEMIQA++APD VRNKVS  A GFLDG+VSL G
Sbjct:   118 WEVVYCSRPTSPGGGYRSVIGRLFFKTKEMIQAIDAPDIVRNKVSINAFGFLDGDVSLTG 177

Query:   177 KLNALDEKWIQVVFEPPELKVGGLEFRYGGQSEVKLQITYIDEKIRLGLGSRGSLFVFQR 236
             KL ALD +W+QV+FEPPE+KVG LEF+YG +SEVKL+ITY+DEK+RLGLGS+GSLFVF+R
Sbjct:   178 KLKALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRR 237

Query:   237 R 237
             R
Sbjct:   238 R 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      241       227   0.00079  113 3  11 22  0.40    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.00u 0.10s 17.10t   Elapsed:  00:00:01
  Total cpu time:  17.00u 0.10s 17.10t   Elapsed:  00:00:01
  Start:  Fri May 10 05:32:54 2013   End:  Fri May 10 05:32:55 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q941D3	PAP8_ARATH	No assigned EC number	0.6597	0.9709	0.9790	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032347001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (238 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034383001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (144 aa)				•					0.427

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
pfam04755	196	pfam04755, PAP_fibrillin, PAP_fibrillin	2e-06

>gnl|CDD|218245 pfam04755, PAP_fibrillin, PAP_fibrillin

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 42/197 (21%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 66  DLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYC-VEAPVKCP-LIFGEWDVVYCS 123
            L   +L  +  ++ G+  + ++  E+     +L+      AP +   L+ G+W ++Y +
Sbjct: 2   RLKRKLLDAIYGTNRGLRASSDDRAEIESAVTQLEALNPTPAPTESLDLLNGKWRLLYTT 61

Query: 124 VPTSPGGGYRSAFGRLFFKTKEMIQAVEAPD-TVRNKVSFTALGFLDGEVSLKGKLNALD 182
                    R        K  ++ Q ++  + TV N V+F+     +G  S++ K     
Sbjct: 62  SKELLPLLARGRL--PLLKVGQIYQTIDVNNLTVYNSVTFSG-PLAEGSFSVRAKFEIRS 118

Query: 183 EKWIQVVFEPPELKV-----GGLEFRYGGQSEVK--------------------LQITYI 217
            K +Q+ FE   L       G L       S ++                    L+ TY+
Sbjct: 119 PKRVQIRFERGVLGTPQLLKGSLTPLQDTASNIRGISSQLPLPFPLSGDRAKGWLETTYL 178

Query: 218 DEKIRLGLGSRGSLFVF 234
           DE +R+  G  GSLFV 
Sbjct: 179 DEDLRISRGDGGSLFVL 195

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
PF04755	198	PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843	100.0

>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle

Probab=100.00  E-value=1.5e-41  Score=289.81  Aligned_cols=169  Identities=28%  Similarity=0.510  Sum_probs=146.3

Q ss_pred             HHHHHHHHHhhhccCCCccCCHhhHHHHHHHHHHHHHhCC-CCCCCC-CCcceeeEEEEecCCCCCCCCCCCccccceee
Q 026269           65 DDLVASILSKVNQSDGGVSLAKEEHKEVAEVAQELQKYCV-EAPVKC-PLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFK  142 (241)
Q Consensus        65 ~~lK~~LL~aia~t~rG~~as~~~r~~I~~li~~LE~~np-~~P~~s-~lL~G~W~LvyTs~~~~~~g~~r~~~G~~~~~  142 (241)
                      +++|++||+++++++||+.++++++++|+++|++||++|| ++|+++ ++|+|+|+|+|||+......+++...  ....
T Consensus         1 ~~~K~~Ll~~~~~~~rG~~~~~~~~~~i~~~v~~LE~~np~~~p~~s~~~L~G~W~Lvytt~~~~~~~l~~~~~--~~~~   78 (198)
T PF04755_consen    1 QDLKQELLQAVAGTNRGLRASPEDREEIEELVEELEALNPTPDPADSLPLLDGRWELVYTTSPEIRSLLQRGRL--PGVR   78 (198)
T ss_pred             ChHHHHHHHHHhccCCCccCCHHHHHHHHHHHHHHHHhCCCCCCcCCchhcCcEEEEEeecCCCcccccccccc--cccc
Confidence            4799999999999999999999999999999999999999 899998 89999999999999987433333221  1356


Q ss_pred             cceeEEEEcCCC-eEEEEEEeccCCceeEEEEEEEEEEEcCCcEEEEEEeCCeEEec-----------------------
Q 026269          143 TKEMIQAVEAPD-TVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVG-----------------------  198 (241)
Q Consensus       143 ~g~v~Q~Id~~~-~v~N~v~~~~~~~l~g~v~v~a~~~~~~~~rv~V~Fe~~~i~~g-----------------------  198 (241)
                      ++++||+||.++ ++.|+|++..+|.+.+.+.+.+++++.++.|+.++|+++.+...                       
T Consensus        79 ~~~v~Q~id~~~~~~~N~v~~~~~~~~~~~~~v~a~~~~~~~~rv~v~f~~~~l~~~~~l~~~l~~~~~~~~~v~~~~~~  158 (198)
T PF04755_consen   79 VGRVFQTIDADNGRVENVVELSGFPLLEGSVSVRASLEVRSPRRVEVTFERASLKPPSLLKGVLGPLKDALNNVPRGISD  158 (198)
T ss_pred             ccceEEEEECCCceEEEEEEEeccCceEEEEEEEEEEEEccccEEEEEEEeeEEcccceeeccchhhhhhhhhccccccc
Confidence            799999999988 89999999988888999999999999999999999999888530                       


Q ss_pred             --ceeeeeC-CcceeEEEEEEecCCeEEEeCCCCcEEEEE
Q 026269          199 --GLEFRYG-GQSEVKLQITYIDEKIRLGLGSRGSLFVFQ  235 (241)
Q Consensus       199 --~l~~pl~-~~~~g~ld~TYLDe~lRIsRG~~G~lFVl~  235 (241)
                        +++++++ ..++||||||||||||||+||++|++|||.
T Consensus       159 ~~~~~~~~~~~~~~g~l~~tYLDedlRI~Rg~~G~~fVl~  198 (198)
T PF04755_consen  159 ELPVPLPLPGGSPKGWLDTTYLDEDLRISRGNKGSLFVLK  198 (198)
T ss_pred             ccccccccCCCCCceEEEEEEECCCeEEEEcCCCCEEEeC
Confidence              1122333 568999999999999999999999999984

The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 35/205 (17%), Positives = 63/205 (30%), Gaps = 51/205 (24%)

Query: 48  KIVRAVSISSPDLRTGPDDLVASILS-----KVNQSDGGVSLAKEEHKEV-AEV----AQ 97
           K   A ++S   L T     V   LS      ++     ++L  +E K +  +      Q
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 98  ELQKYCVEAPVKCPL---IFGE--------WDVVYCSVPTSPGGGYRSAFGRLFFKTKEM 146
           +L +   E     P    I  E        WD             ++        K   +
Sbjct: 317 DLPR---EVLTTNPRRLSIIAESIRDGLATWD------------NWKHVN---CDKLTTI 358

Query: 147 IQA-VEA--PDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVVFEPPELKVGGLE-- 201
           I++ +    P   R    F  L        +   L  L   W  V+     + V  L   
Sbjct: 359 IESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTIL--LSLIWFDVIKSDVMVVVNKLHKY 414

Query: 202 ---FRYGGQSEVKLQITYIDEKIRL 223
               +   +S + +   Y++ K++L
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKL 439

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
4gzv_A	142	Hypothetical protein; AN eight-stranded beta barre	83.49

>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}

Probab=83.49  E-value=15  Score=29.22  Aligned_cols=71  Identities=13%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             CCCcceeeEEEEecCCCCCCCCCCCccccceeecceeEEEEcCCCeEEEEEEeccCCceeEEEEEEEEEEEcCCcEEEEE
Q 026269          110 CPLIFGEWDVVYCSVPTSPGGGYRSAFGRLFFKTKEMIQAVEAPDTVRNKVSFTALGFLDGEVSLKGKLNALDEKWIQVV  189 (241)
Q Consensus       110 s~lL~G~W~LvyTs~~~~~~g~~r~~~G~~~~~~g~v~Q~Id~~~~v~N~v~~~~~~~l~g~v~v~a~~~~~~~~rv~V~  189 (241)
                      ..-|.|-|++++-.+.....+.        -...+.++-+|..++++.|++-...-   ...+...|+++..++....-.
T Consensus         9 ~~~L~GvWQ~c~y~~~~~~~~~--------~l~~s~~~KIlS~DgtF~N~~m~~~~---~aiIt~yGtY~l~SD~~Y~E~   77 (142)
T 4gzv_A            9 AADLKGIWQLCHYVSESPDVPG--------ALKPSNTFKVLSDDGRIVNFTIIPGA---DAIITGYGTYKQLTDDSYKES   77 (142)
T ss_dssp             SCCCCEEEEEEEEEESSTTSCC--------EEEEEEEEEEECTTSEEEEEECCTTS---CCEEEEEEEEEEEETTEEEEE
T ss_pred             cccceEEeEEeeEeecCCCCCc--------eEeecCceEEECCCCcEEEEEEeCCC---CcEEEEeEEEEecCCCeeeee
Confidence            3469999998854444321111        23346678899999899999854422   334567889988777654444


Q ss_pred             Ee
Q 026269          190 FE  191 (241)
Q Consensus       190 Fe  191 (241)
                      .+
T Consensus        78 i~   79 (142)
T 4gzv_A           78 IE   79 (142)
T ss_dssp             EE
T ss_pred             ec
Confidence            33

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00