Citrus Sinensis ID: 026279

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MGGKDGDRNKNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccHHHHHHHccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccHHHcccc
Coil and Loop (DISEMBL)
mggkdgdrnknnpwpspngpqqekaDVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSqlsrpqsswkgasgssfrsSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWrqndydngtyhhhfqrddwywkadpsyrqqrtnfrqppresesyslshhysvlgldrlrkapytEAEIKTAFRAKakefhpdqnqgnKEAAEAKFKEVMVSYEAIKQERKDMNS
Flexible Loop (DISEMBL)
mggkdgdrnknnpwpspngpqqEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLsrpqsswkgasgssfrssfqeeaWKRYNRRMREEYEEEMERVERIrrmqsvfnrernkykksyESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFrqppresesyslshHYSVLGLDRLRKAPYTEAEIKTAFRAKAkefhpdqnqgnkeaAEAKFKEVMVSYEAIKQERKDMNS
Low Complexity Region (SEG)
MGGKDGDRNKNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWKGASGSSFRSSFQEEAWKRYNrrmreeyeeemerverirrmQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPResesyslshhysvlGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS
Disordered region (IsUnstruct)
*************************DVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQ***************************************************************YESWRQNDYDNGTYHHHFQRDDWYWKAD************************HYSVLGLDRLRKAPYTEA*I**********************************************
Disordered Region (DISOPRED)
*******************************VFLFGLIGATATTFAVGQLRKTVDWVYSQLS********************EAWKRYNRR**********************************************HHHFQRDDWYWKADP***********************HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI*********
Disordered Region (DISEMBL)
*********KNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQ********************QEEAWKRYNRRMRE*********ERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSY*******************SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK********
Disordered Region (DISPRO)
*************************DVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWK*******RSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPS*******FRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGKDGDRNKNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWKGASGSSFRSSFQEEAWKRYxxxxxxxxxxxxxxxxxxxxxQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNxxxxxxxxxxxxxxxxxxxxxRKDMNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
A3DF24	386	Chaperone protein DnaJ OS	yes	no	0.236	0.147	0.483	2e-07
Q6L0S6	357	Chaperone protein DnaJ OS	yes	no	0.236	0.159	0.467	6e-07
Q52702	384	Chaperone protein DnaJ OS	yes	no	0.232	0.145	0.508	1e-06
A7HZ38	385	Chaperone protein DnaJ OS	yes	no	0.228	0.142	0.5	1e-06
B6IZJ1	374	Chaperone protein DnaJ OS	yes	no	0.236	0.152	0.483	1e-06
A9KG87	375	Chaperone protein DnaJ OS	yes	no	0.236	0.152	0.483	1e-06
B6J7U6	375	Chaperone protein DnaJ OS	yes	no	0.236	0.152	0.483	1e-06
Q73XZ6	381	Chaperone protein DnaJ 1	N/A	no	0.232	0.146	0.451	3e-06
Q2NVZ0	374	Chaperone protein DnaJ OS	yes	no	0.244	0.157	0.453	4e-06
A9MR76	375	Chaperone protein DnaJ OS	N/A	no	0.236	0.152	0.451	4e-06

>sp|A3DF24|DNAJ_CLOTH Chaperone protein DnaJ OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaJ PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 43/62 (69%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+DR      ++AEIK A+R  AK++HPD N G+K AAEAKFKE+  +YE +   
Sbjct: 7   YYEILGVDR----GASDAEIKKAYRKLAKQYHPDMNPGDK-AAEAKFKEINEAYEVLSDP 61

Query: 236 RK 237
           +K
Sbjct: 62  QK 63

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|Q6L0S6|DNAJ_PICTO Chaperone protein DnaJ OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=dnaJ PE=3 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y++LG+DR      ++ +IK AFR  AK++HPD N GNKE AE KFKE+  +YE +   
Sbjct: 5   YYAILGVDR----NASQDDIKKAFRELAKKYHPDANPGNKE-AEEKFKEIAEAYEVLSDP 59

Query: 236 RK 237
           +K
Sbjct: 60  QK 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) (taxid: 263820)

>sp|Q52702|DNAJ_RHOCA Chaperone protein DnaJ OS=Rhodobacter capsulatus GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLG+ +   A     EIK A+R+KAKE HPD+NQG + AAEA+FKEV  +Y+ +K   
Sbjct: 7   YEVLGVSKGASAE----EIKKAYRSKAKELHPDRNQG-QSAAEAQFKEVNGAYDVLKDGD 61

Query: 237 K 237
           K
Sbjct: 62  K 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Rhodobacter capsulatus (taxid: 1061)

>sp|A7HZ38|DNAJ_PARL1 Chaperone protein DnaJ OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=dnaJ PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 5/60 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLG+ R   A     E+K A+R+ AK++HPDQNQG+KE AE +FKE+  +Y+A+K E+
Sbjct: 7   YDVLGVSRNASAD----ELKKAYRSLAKKYHPDQNQGDKE-AEQRFKELNEAYDALKDEQ 61

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) (taxid: 402881)

>sp|B6IZJ1|DNAJ_COXB2 Chaperone protein DnaJ OS=Coxiella burnetii (strain CbuG_Q212) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG++R      TEAE+K AFR  A ++HPD+N G+K+ AE KFKE   +YE +   
Sbjct: 6   YYEVLGVNR----NATEAEVKKAFRRLAMKYHPDRNPGDKD-AEVKFKEAREAYEVLCDS 60

Query: 236 RK 237
           RK
Sbjct: 61  RK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)

>sp|A9KG87|DNAJ_COXBN Chaperone protein DnaJ OS=Coxiella burnetii (strain Dugway 5J108-111) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG++R      TEAE+K AFR  A ++HPD+N G+K+ AE KFKE   +YE +   
Sbjct: 6   YYEVLGVNR----NATEAEVKKAFRRLAMKYHPDRNPGDKD-AEVKFKEAREAYEVLCDS 60

Query: 236 RK 237
           RK
Sbjct: 61  RK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

>sp|B6J7U6|DNAJ_COXB1 Chaperone protein DnaJ OS=Coxiella burnetii (strain CbuK_Q154) GN=dnaJ PE=3 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG++R      TEAE+K AFR  A ++HPD+N G+K+ AE KFKE   +YE +   
Sbjct: 6   YYEVLGVNR----NATEAEVKKAFRRLAMKYHPDRNPGDKD-AEVKFKEAREAYEVLCDS 60

Query: 236 RK 237
           RK
Sbjct: 61  RK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

>sp|Q73XZ6|DNAJ1_MYCPA Chaperone protein DnaJ 1 OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=dnaJ1 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R      ++AEIK A+R  A+E HPD N    EAA+AKFKE+ V+YE +   
Sbjct: 5   YYGLLGVSR----GASDAEIKRAYRKLARELHPDVNP--DEAAQAKFKEISVAYEVLSDP 58

Query: 236 RK 237
            K
Sbjct: 59  EK 60

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Mycobacterium paratuberculosis (taxid: 1770)

>sp|Q2NVZ0|DNAJ_SODGM Chaperone protein DnaJ OS=Sodalis glossinidius (strain morsitans) GN=dnaJ PE=3 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 5/64 (7%)

Query: 174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK 233
           S +Y +LG+ R       E EIK A++ +A +FHPD+N+GN E AEAKFKE+  +YE + 
Sbjct: 4   SDYYEILGVSR----DAEEREIKKAYKRQAMKFHPDRNRGNAE-AEAKFKEIKEAYEVLT 58

Query: 234 QERK 237
             +K
Sbjct: 59  DAQK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Sodalis glossinidius (strain morsitans) (taxid: 343509)

>sp|A9MR76|DNAJ_SALAR Chaperone protein DnaJ OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=dnaJ PE=3 SV=1

 Score = 51.6 bits (122), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+ +  +    E EIK A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   
Sbjct: 6   YYEVLGVSKTAE----EREIKKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKAAYEVLTDA 60

Query: 236 RK 237
           +K
Sbjct: 61  QK 62

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) (taxid: 41514)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
255537962	246	heat shock protein binding protein, puta	0.979	0.959	0.75	3e-93
224081863	255	predicted protein [Populus trichocarpa]	0.966	0.913	0.677	9e-88
297813203	234	hypothetical protein ARALYDRAFT_351886 [	0.966	0.995	0.651	2e-85
449450314	244	PREDICTED: uncharacterized protein LOC10	0.979	0.967	0.720	4e-85
224067160	230	predicted protein [Populus trichocarpa]	0.921	0.965	0.691	4e-82
225458924	249	PREDICTED: uncharacterized protein LOC10	0.950	0.919	0.735	4e-82
356510636	226	PREDICTED: uncharacterized protein LOC10	0.879	0.938	0.728	3e-79
334186393	230	chaperone DnaJ-domain containing protein	0.950	0.995	0.613	8e-75
21536587	230	unknown [Arabidopsis thaliana]	0.950	0.995	0.613	2e-74
363814549	221	uncharacterized protein LOC100776208 [Gl	0.863	0.941	0.711	1e-72

>gi|255537962|ref|XP_002510046.1| heat shock protein binding protein, putative [Ricinus communis] gi|223550747|gb|EEF52233.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/248 (75%), Positives = 205/248 (82%), Gaps = 12/248 (4%)

Query: 1   MGG----KDGD---RNKNNPWPSPNGPQQEK--ADVKLWGVFLFGLIGATATTFAVGQLR 51
           MGG    +D D   RN  NPW SPN P QEK   D+KLW V L GLIGATATTFAVGQLR
Sbjct: 1   MGGGNTNRDDDNTNRNNENPWQSPNRPYQEKRAEDMKLWSVLLLGLIGATATTFAVGQLR 60

Query: 52  KTVDWVYSQLSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQS 111
           +TVDW Y+QL+R QS  KG +GSSFRS+FQEEAWKRYNRRM+EEYE+EMERVERIRRMQS
Sbjct: 61  RTVDWFYAQLTRSQSCGKGRAGSSFRSTFQEEAWKRYNRRMQEEYEQEMERVERIRRMQS 120

Query: 112 VFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESY 171
           VFNRERNKYK+SYESWR+N    G YH HFQRDDWYWK D S+R Q+T+FR  PRES +Y
Sbjct: 121 VFNRERNKYKRSYESWREN--GQGQYHQHFQRDDWYWKTDTSFRDQKTDFR-TPRESTNY 177

Query: 172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEA 231
            LS+HYSVLGL+R R APYTEAEIK AFR KAKEFHPDQNQ NKE AEAKFKEVM+SYEA
Sbjct: 178 PLSYHYSVLGLNRSRTAPYTEAEIKNAFRTKAKEFHPDQNQDNKEVAEAKFKEVMISYEA 237

Query: 232 IKQERKDM 239
           IKQERK+M
Sbjct: 238 IKQERKNM 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081863|ref|XP_002306506.1| predicted protein [Populus trichocarpa] gi|222855955|gb|EEE93502.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (842), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 174/257 (67%), Positives = 200/257 (77%), Gaps = 24/257 (9%)

Query: 1   MGGKDGDRNKNNPWPS-----PNGPQQEKA-DVKLWGVFLFGLIGATATTFAVGQLRKTV 54
           MGG+  +++K+NPWPS     P  P Q K+ D+KLWGV +FGLIGATATT+AV QLR+TV
Sbjct: 1   MGGEKINQSKDNPWPSSTNMPPPPPYQGKSEDMKLWGVVIFGLIGATATTYAVRQLRRTV 60

Query: 55  DWVYSQLSRPQSSWKGASGSS--FRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSV 112
           D +Y+   R QS WKG SG+S  FR+ FQEEAWK YNRRM+E +EEEMERVERIRRMQSV
Sbjct: 61  DELYA---RSQSMWKGGSGTSKSFRTYFQEEAWKNYNRRMQEAHEEEMERVERIRRMQSV 117

Query: 113 FNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYS 172
           FNRERNK+K+ YE WR+N    G  H HFQRDDWYWK D ++R QRTNFR+ PR+S SY 
Sbjct: 118 FNRERNKFKRDYERWRENG--PGADHQHFQRDDWYWKTDSAFRDQRTNFRRTPRDSGSYP 175

Query: 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE-----------AAEAK 221
           LSHHYSVLGLDR R APYTEAEIKTAFR KAKEFHPDQNQ NK            A+EAK
Sbjct: 176 LSHHYSVLGLDRSRTAPYTEAEIKTAFRTKAKEFHPDQNQDNKGWLLFLITNYDLASEAK 235

Query: 222 FKEVMVSYEAIKQERKD 238
           FKEVM+SYEAIKQERK+
Sbjct: 236 FKEVMISYEAIKQERKN 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813203|ref|XP_002874485.1| hypothetical protein ARALYDRAFT_351886 [Arabidopsis lyrata subsp. lyrata] gi|297320322|gb|EFH50744.1| hypothetical protein ARALYDRAFT_351886 [Arabidopsis lyrata subsp. lyrata]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/238 (65%), Positives = 189/238 (79%), Gaps = 5/238 (2%)

Query: 1   MGGKDGDRNKNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQ 60
           MGG+D    K NP P P     +KAD+KLWG+  F +IGATATTFAV QLR++ DWVY+Q
Sbjct: 1   MGGEDEKDKKWNPPPPP-----QKADLKLWGILAFTVIGATATTFAVHQLRRSFDWVYTQ 55

Query: 61  LSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKY 120
           ++R QS+ KGA G SFR+++QEEAW+RYN+RM+EEYE+E+ERVERIRRMQSVFNRERNK+
Sbjct: 56  VARSQSARKGAKGGSFRTAYQEEAWRRYNKRMQEEYEDELERVERIRRMQSVFNRERNKF 115

Query: 121 KKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVL 180
           ++ YE+W++ND     YH  FQR DWYWK + S+R QRTN ++PP +   Y LSHHYSVL
Sbjct: 116 RRGYENWKENDPGAQQYHQQFQRHDWYWKTESSHRNQRTNHQEPPDQRRVYPLSHHYSVL 175

Query: 181 GLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238
           GL R R  PYTEAEIK AFR KA EFHPDQNQ NK  AEAKFKEV++SYEAIK+ERK+
Sbjct: 176 GLSRSRATPYTEAEIKKAFREKALEFHPDQNQDNKVVAEAKFKEVLLSYEAIKEERKE 233

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450314|ref|XP_004142908.1| PREDICTED: uncharacterized protein LOC101213280 [Cucumis sativus] gi|449494391|ref|XP_004159534.1| PREDICTED: uncharacterized LOC101213280 [Cucumis sativus]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 175/243 (72%), Positives = 200/243 (82%), Gaps = 7/243 (2%)

Query: 1   MGGKDGDRNKNNPWPSPNGPQQEKA-DVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYS 59
           M   +G  +K N W SP    QEK  D+KLWG+ LFGLIGA+ATT AVGQLRKTVDWVY+
Sbjct: 1   MTDDNGKPDKGNQWQSPRPSHQEKEEDMKLWGILLFGLIGASATTLAVGQLRKTVDWVYT 60

Query: 60  QLSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNK 119
           QLSR QSSW G +G SFRSSFQE+AWKRYNRR++EEYEEEMERVERIRRMQ+VFNRERNK
Sbjct: 61  QLSRSQSSWGGGTGRSFRSSFQEDAWKRYNRRLQEEYEEEMERVERIRRMQNVFNRERNK 120

Query: 120 YKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQR----TNFRQPPRESESYSLSH 175
           YK+ YESWR+N  D G+YH H QRDDWYWKA+  YR+QR     N+R+ PR   SY LSH
Sbjct: 121 YKRGYESWREN--DPGSYHQHQQRDDWYWKAETFYREQRQSNTNNYRETPRNGPSYLLSH 178

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           HY+VLGL+R RK PYT+AEIKTAF++KAK+FHPDQNQ NKEAAEAKFKEVM SYEAIK E
Sbjct: 179 HYTVLGLNRCRKTPYTDAEIKTAFQSKAKQFHPDQNQDNKEAAEAKFKEVMTSYEAIKSE 238

Query: 236 RKD 238
           RK+
Sbjct: 239 RKN 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067160|ref|XP_002302385.1| predicted protein [Populus trichocarpa] gi|222844111|gb|EEE81658.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 168/243 (69%), Positives = 192/243 (79%), Gaps = 21/243 (8%)

Query: 1   MGGKDGDRNKNNPWPSPNGP---QQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWV 57
           MGG++ +R+K+NPWPSPN P   Q +  D+ LWGV +FGLIGATATT+A           
Sbjct: 1   MGGEEINRSKDNPWPSPNRPPPYQGKSEDMSLWGVVMFGLIGATATTYA----------- 49

Query: 58  YSQLSRPQSSWKGASGS--SFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNR 115
              L+R QS+WKGA+GS  SFR+ FQEEA K YNRRM+E YEEEMERVERIRRMQSVFNR
Sbjct: 50  ---LTRSQSAWKGATGSARSFRTYFQEEACKNYNRRMQEAYEEEMERVERIRRMQSVFNR 106

Query: 116 ERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSH 175
           ERNKY + +E WR+N    G YH +FQRDDWYWK D S+R+QRTNFR+  R+S SYSLSH
Sbjct: 107 ERNKYTRDHEKWRENG--PGAYHQNFQRDDWYWKTDTSFREQRTNFRRTSRDSGSYSLSH 164

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           HYSVLGLDR R  PYTEAEIKTAFR KAKEFHPDQNQ NKEAAEAKFKEVM+SYEAIK E
Sbjct: 165 HYSVLGLDRSRTIPYTEAEIKTAFRTKAKEFHPDQNQDNKEAAEAKFKEVMISYEAIKLE 224

Query: 236 RKD 238
           RK+
Sbjct: 225 RKN 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458924|ref|XP_002285499.1| PREDICTED: uncharacterized protein LOC100248937 [Vitis vinifera] gi|302142151|emb|CBI19354.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 172/234 (73%), Positives = 190/234 (81%), Gaps = 5/234 (2%)

Query: 11  NNPWPSPNGPQQEKAD-VKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWK 69
           NNPW   NG  +EK + ++LWG+FLF LIGAT TTFAVGQ R+T  W Y+Q +R QSS  
Sbjct: 18  NNPWARSNGQYEEKGEGMRLWGIFLFSLIGATVTTFAVGQFRRTAGWFYTQFARSQSSRN 77

Query: 70  GASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQ 129
           GA+GSSFRSSFQEEAWKRYNRRM+EEYEEEMERVERI+RMQSVFNRERNKYK+SYESWR+
Sbjct: 78  GATGSSFRSSFQEEAWKRYNRRMQEEYEEEMERVERIKRMQSVFNRERNKYKRSYESWRE 137

Query: 130 NDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRE--SESYSLSHHYSVLGLDRLRK 187
           N    G YH HFQRDDWYWK D SY+ QR N R+ PR+  S SY LSHHY  LGLDR R 
Sbjct: 138 N--GEGPYHQHFQRDDWYWKTDTSYKYQRANAREIPRDRTSASYPLSHHYLTLGLDRTRA 195

Query: 188 APYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS 241
            PYTEAEIK AFRAKA EFHPDQNQ NKEAAEAKFKEVM SYEAIK ERK+ +S
Sbjct: 196 KPYTEAEIKNAFRAKAMEFHPDQNQDNKEAAEAKFKEVMTSYEAIKLERKNGSS 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510636|ref|XP_003524043.1| PREDICTED: uncharacterized protein LOC100812371 [Glycine max]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 156/214 (72%), Positives = 185/214 (86%), Gaps = 2/214 (0%)

Query: 28  KLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWKGASGSSFRSSFQEEAWKR 87
           K+WG  LFG IGAT TTFAVGQLR++ +W Y+QLSR QSSWKG SG SFRS+FQEEAW+R
Sbjct: 15  KIWGAILFGFIGATVTTFAVGQLRRSAEWFYTQLSRTQSSWKGESGGSFRSAFQEEAWRR 74

Query: 88  YNRRMREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWY 147
           +N+RM+EE EEE+ERVERIRRMQSVFNRERNKYK+SYESWR++    G YH H QR+DWY
Sbjct: 75  HNKRMQEELEEEIERVERIRRMQSVFNRERNKYKRSYESWRES--GPGAYHQHSQREDWY 132

Query: 148 WKADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFH 207
           WKAD S+R +RTN+R+ PRES +Y+LSHHYSVLGLDR RK PY+EAEIKTAFR KAKE+H
Sbjct: 133 WKADTSFRDKRTNYRETPRESGNYALSHHYSVLGLDRFRKTPYSEAEIKTAFRTKAKEYH 192

Query: 208 PDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS 241
           PDQNQ N  AAE+KFKEV+ SYEAIKQER++ ++
Sbjct: 193 PDQNQDNIVAAESKFKEVLTSYEAIKQERRNHHT 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186393|ref|NP_567329.2| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|332657188|gb|AEE82588.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 177/238 (74%), Gaps = 9/238 (3%)

Query: 1   MGGKDGDRNKNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQ 60
           MGG+D   +K+  W  P  P Q+K D + W V    +I ATATTFAV QLR+  DWVY+Q
Sbjct: 1   MGGED---DKDKKWNPP--PPQQKPDSRPWEVLAAFVICATATTFAVHQLRRNFDWVYTQ 55

Query: 61  LSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKY 120
           L+R  S+ +G    +FR+SFQEEAW+RYN+RM+EEYE+E+ERV RIRRMQSVFNRERNK+
Sbjct: 56  LTRTPSAGRG----TFRTSFQEEAWRRYNKRMQEEYEDELERVARIRRMQSVFNRERNKF 111

Query: 121 KKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVL 180
           ++ YE+W +ND     YH  FQR DWYWK + S+R QRTN ++P  +   Y LSHHYSVL
Sbjct: 112 RRGYENWTENDPGAQQYHQQFQRHDWYWKTESSHRNQRTNHQEPSDQRRVYPLSHHYSVL 171

Query: 181 GLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238
           GL R R  PYTEAEIK AFR KA EFHPDQNQ NK  AEAKFKEV++SYEAIKQE K+
Sbjct: 172 GLSRSRATPYTEAEIKKAFREKALEFHPDQNQDNKIVAEAKFKEVLLSYEAIKQEIKE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536587|gb|AAM60919.1| unknown [Arabidopsis thaliana]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 176/238 (73%), Gaps = 9/238 (3%)

Query: 1   MGGKDGDRNKNNPWPSPNGPQQEKADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQ 60
           MGG+D   +K+  W  P  P Q+K D + W V    +I ATATTFAV QLR+  DWVY+Q
Sbjct: 1   MGGED---DKDKKWNPP--PPQQKPDSRPWEVLAAFVICATATTFAVHQLRRNFDWVYTQ 55

Query: 61  LSRPQSSWKGASGSSFRSSFQEEAWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKY 120
           L+R  S+ +G    +FR+SFQEEAW+RYN+RM+EEYE+E+ERV RIRRMQSVFNRERNK+
Sbjct: 56  LTRTPSAGRG----TFRTSFQEEAWRRYNKRMQEEYEDELERVARIRRMQSVFNRERNKF 111

Query: 121 KKSYESWRQNDYDNGTYHHHFQRDDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVL 180
           ++ YE+W +ND     YH  FQR DWYWK + S R QRTN ++P  +   Y LSHHYSVL
Sbjct: 112 RRGYENWTENDPGAQQYHQQFQRHDWYWKTESSXRNQRTNHQEPSDQRRVYPLSHHYSVL 171

Query: 181 GLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238
           GL R R  PYTEAEIK AFR KA EFHPDQNQ NK  AEAKFKEV++SYEAIKQE K+
Sbjct: 172 GLSRSRATPYTEAEIKKAFREKALEFHPDQNQDNKIVAEAKFKEVLLSYEAIKQEIKE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814549|ref|NP_001241946.1| uncharacterized protein LOC100776208 [Glycine max] gi|255634498|gb|ACU17613.1| unknown [Glycine max]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/215 (71%), Positives = 180/215 (83%), Gaps = 7/215 (3%)

Query: 24  KADVKLWGVFLFGLIGATATTFAVGQLRKTVDWVYSQLSRPQSSWKGASGSSFRSSFQEE 83
           K + ++WG  LFGLIGAT TTFAVGQLR++V+W Y+Q     SSWKG    SFRS+ QEE
Sbjct: 11  KDNNRIWGAILFGLIGATVTTFAVGQLRRSVEWFYTQ-----SSWKGGRNGSFRSALQEE 65

Query: 84  AWKRYNRRMREEYEEEMERVERIRRMQSVFNRERNKYKKSYESWRQNDYDNGTYHHHFQR 143
           AW+R+N+RM+EE EEEMERVERIRR+QSVFNRERNKYK+SYESWR +    G YH HFQR
Sbjct: 66  AWRRHNKRMQEELEEEMERVERIRRVQSVFNRERNKYKRSYESWRGSG--PGAYHQHFQR 123

Query: 144 DDWYWKADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKA 203
           +DWYWKAD S+R +RTN+++ PRES +Y+LSHHYSVLGLDR RK PY+EAEIKTAFR KA
Sbjct: 124 EDWYWKADTSFRDKRTNYQETPRESGNYALSHHYSVLGLDRFRKTPYSEAEIKTAFRTKA 183

Query: 204 KEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD 238
           KE+HPDQNQ N  AAEAKFKEV+ SYEAIKQERK+
Sbjct: 184 KEYHPDQNQDNIVAAEAKFKEVLTSYEAIKQERKN 218

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
UNIPROTKB|F1SR79	325	DNAJB2 "Uncharacterized protei	0.224	0.166	0.5	5.5e-06
DICTYBASE|DDB_G0291568	459	dnaja1 "DnaJ homolog subfamily	0.228	0.119	0.473	5.7e-06
TIGR_CMR|CBU_1289	374	CBU_1289 "chaperone protein dn	0.190	0.122	0.531	7.2e-06
UNIPROTKB|B0CM59	277	DNAJB2 "DnaJ homolog, subfamil	0.182	0.158	0.522	1.2e-05
MGI|MGI:1928739	277	Dnajb2 "DnaJ (Hsp40) homolog,	0.182	0.158	0.522	1.2e-05
UNIPROTKB|Q58DD3	278	DNAJB2 "DnaJ (Hsp40) homolog,	0.182	0.158	0.522	1.2e-05
UNIPROTKB|P25686	324	DNAJB2 "DnaJ homolog subfamily	0.182	0.135	0.522	1.7e-05
UNIPROTKB|B0KWI7	324	DNAJB2 "DnaJ homolog, subfamil	0.182	0.135	0.522	1.7e-05
UNIPROTKB|P08622	376	dnaJ [Escherichia coli K-12 (t	0.186	0.119	0.5	2.2e-05
RGD|1591035	259	Dnajb2 "DnaJ (Hsp40) homolog,	0.161	0.150	0.564	5.6e-05

UNIPROTKB|F1SR79 DNAJB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 28/56 (50%), Positives = 36/56 (64%)

Query:   182 LDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             LD  R A  T  +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:     8 LDVPRSA--TADDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0016234 "inclusion body" evidence=IEA

GO:0008285 "negative regulation of cell proliferation" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

DICTYBASE|DDB_G0291568 dnaja1 "DnaJ homolog subfamily A member 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 128 (50.1 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query:   183 DRLRKAP-YTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERK 237
             +RL   P  TE E+K A+R  A ++HPD+NQG  K+AAEAKFK++  +YE +    K
Sbjct:     9 ERLGVKPDCTEDELKKAYRKMAVKYHPDKNQGPGKDAAEAKFKDISEAYEVLSDPEK 65

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TIGR_CMR|CBU_1289 CBU_1289 "chaperone protein dnaJ" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 126 (49.4 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query:   191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             TEAE+K AFR  A ++HPD+N G+K+A E KFKE   +YE +   RK
Sbjct:    17 TEAEVKKAFRRLAMKYHPDRNPGDKDA-EVKFKEAREAYEVLCDSRK 62

GO:0009408 "response to heat" evidence=ISS

UNIPROTKB|B0CM59 DNAJB2 "DnaJ homolog, subfamily B, member 2, isoform 1 (Predicted)" [Papio anubis (taxid:9555)]

 Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

MGI|MGI:1928739 Dnajb2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Mus musculus (taxid:10090)]

 Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0016234 "inclusion body" evidence=ISO

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0031593 "polyubiquitin binding" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0070628 "proteasome binding" evidence=ISO

GO:0090084 "negative regulation of inclusion body assembly" evidence=ISO

GO:0090086 "negative regulation of protein deubiquitination" evidence=ISO

UNIPROTKB|Q58DD3 DNAJB2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Bos taurus (taxid:9913)]

 Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0016234 "inclusion body" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

UNIPROTKB|P25686 DNAJB2 "DnaJ homolog subfamily B member 2" [Homo sapiens (taxid:9606)]

 Score = 122 (48.0 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=IGI

GO:0030308 "negative regulation of cell growth" evidence=IGI

GO:0051082 "unfolded protein binding" evidence=TAS

GO:0006986 "response to unfolded protein" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000502 "proteasome complex" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0016234 "inclusion body" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0031593 "polyubiquitin binding" evidence=IDA

GO:0070628 "proteasome binding" evidence=IDA

GO:0090086 "negative regulation of protein deubiquitination" evidence=IDA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IDA

UNIPROTKB|B0KWI7 DNAJB2 "DnaJ homolog, subfamily B, member 2 isoform b (Predicted)" [Callithrix jacchus (taxid:9483)]

 Score = 122 (48.0 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 23/44 (52%), Positives = 31/44 (70%)

Query:   194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct:    18 DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

UNIPROTKB|P08622 dnaJ [Escherichia coli K-12 (taxid:83333)]

 Score = 122 (48.0 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query:   192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
             E EI+ A++  A ++HPD+NQG+KEA EAKFKE+  +YE +   +K
Sbjct:    18 EREIRKAYKRLAMKYHPDRNQGDKEA-EAKFKEIKEAYEVLTDSQK 62

GO:0003756 "protein disulfide isomerase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA;IMP

GO:0006457 "protein folding" evidence=IDA

GO:0042026 "protein refolding" evidence=IDA

GO:0051082 "unfolded protein binding" evidence=IEA;IDA

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0009408 "response to heat" evidence=IEA;IEP

GO:0046872 "metal ion binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0043335 "protein unfolding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

RGD|1591035 Dnajb2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query:   194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI 232
             +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +
Sbjct:    18 DIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVL 56

GO:0000502 "proteasome complex" evidence=IEA;ISO

GO:0008285 "negative regulation of cell proliferation" evidence=IEA;ISO

GO:0016234 "inclusion body" evidence=IEA;ISO

GO:0030308 "negative regulation of cell growth" evidence=IEA;ISO

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0030544 "Hsp70 protein binding" evidence=IEA;ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA;ISO

GO:0031593 "polyubiquitin binding" evidence=IEA;ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0070628 "proteasome binding" evidence=IEA;ISO

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA;ISO

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.V.4334.1 hypothetical protein (233 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	241
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-13
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-13
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	5e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-11
pfam00226	63	pfam00226, DnaJ, DnaJ domain	6e-11
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-10
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-10
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-10
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	1e-09
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-09
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	4e-09
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	7e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-08
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-08
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	5e-08
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	1e-07
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-07
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-07
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-07
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	2e-07
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	8e-07
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	4e-06
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	5e-06
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	9e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-05
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-05
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	4e-05
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	6e-05
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	6e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	8e-05
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-04
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	2e-04
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-04
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	7e-04
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	0.002

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 68.6 bits (169), Expect = 2e-13
 Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLG+ R   A  +E EIK A+R  A ++HPD+N G+KE AE KFKE+  +YE +   +
Sbjct: 7   YEVLGVSR--NA--SEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQ 61

Query: 237 K 237
           K
Sbjct: 62  K 62

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 62.6 bits (153), Expect = 2e-13
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R      +  EIK A+R  A ++HPD+N G+KE AE KFKE+  +YE +   
Sbjct: 3   YYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDP 58

Query: 236 RK 237
            K
Sbjct: 59  EK 60

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+ +   A  +E EIK A+R  AK++HPD+N G+KEA E KFKE+  +YE +    
Sbjct: 7   YEILGVSK--DA--SEEEIKKAYRKLAKKYHPDRNPGDKEAEE-KFKEINEAYEVLSDPE 61

Query: 237 K 237
           K
Sbjct: 62  K 62

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 62.5 bits (152), Expect = 2e-11
 Identities = 30/62 (48%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+DR      TE EIK A+R  AK++HPD N G+KE AE KFKE+  +YE +   
Sbjct: 7   YYEILGVDR----NATEEEIKKAYRRLAKKYHPDLNPGDKE-AEQKFKEINEAYEILSDP 61

Query: 236 RK 237
           +K
Sbjct: 62  QK 63

Length = 386

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 56.0 bits (136), Expect = 6e-11
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R      ++ EIK A+R  A ++HPD+N G+  A E KFKE+  +YE +   
Sbjct: 2   YYEILGVPRDA----SDEEIKKAYRKLALKYHPDKNPGDPAAEE-KFKEINEAYEVLSDP 56

Query: 236 RK 237
            K
Sbjct: 57  EK 58

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 6/61 (9%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+ +   A  +E EIK A+R  AK++HPD+N+ +KE AE KFKE+  +YE +    
Sbjct: 3   YEILGVSK--DA--SEEEIKKAYRKLAKKYHPDRNK-DKE-AEEKFKEINEAYEVLSDPE 56

Query: 237 K 237
           K
Sbjct: 57  K 57

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 4/62 (6%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+DR      ++ +IK AFR  AK++HPD + GNK  AE KFKE+  +YE +   
Sbjct: 5   YYKILGVDR----NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDP 60

Query: 236 RK 237
           +K
Sbjct: 61  QK 62

Length = 365

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 59.0 bits (143), Expect = 3e-10
 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 5/65 (7%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLGL++      ++ EIK AFR  A ++HPD+N+GNKE AE KFKE+  +Y+ +   
Sbjct: 6   YYEVLGLEK----GASDDEIKKAFRKLAIKYHPDKNKGNKE-AEEKFKEINEAYQVLSDP 60

Query: 236 RKDMN 240
           +K   
Sbjct: 61  QKKAQ 65

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 6/55 (10%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE 230
           +Y +LG+ R   A  ++AEIK A+R  A+E HPD N    E A+ KFKE+ V+YE
Sbjct: 5   YYGLLGVSR--NA--SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYE 53

Length = 378

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE 230
           +Y +LG+        ++ EIK A+R  A ++HPD+N  + EA E KFKE+  +YE
Sbjct: 2   YYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDDPEAEE-KFKEINEAYE 51

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+ R       + EIK A+R  A ++HPD+N  NKE AE  FKEV  +YE +  +
Sbjct: 5   YYEVLGVSR----SADKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSND 59

Query: 236 RK 237
            K
Sbjct: 60  DK 61

Length = 397

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 54.9 bits (132), Expect = 7e-09
 Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+ +      TEAEIK A+R  A+E+HPD N+G+ +A E +FKE+  +Y+ +  E
Sbjct: 11  YYKVLGVPK----DATEAEIKKAYRKLAREYHPDANKGDAKAEE-RFKEISEAYDVLSDE 65

Query: 236 RK 237
           +K
Sbjct: 66  KK 67

Length = 389

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+ R      +E EIK A+R  A ++HPD+N  N E AE KFKE   +YE ++  
Sbjct: 6   YYEVLGVSR----DASEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDA 60

Query: 236 RK 237
            K
Sbjct: 61  EK 62

Length = 373

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 54.5 bits (131), Expect = 1e-08
 Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 9/67 (13%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI--- 232
           +Y VLG+ +      T  EIK A+R KA ++HPD+N G+KE AE KFKE   +Y+ +   
Sbjct: 7   YYEVLGVSK----TATVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDP 61

Query: 233 -KQERKD 238
            K+ R D
Sbjct: 62  DKRSRYD 68

Length = 386

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y++LG+ +      +  EIK A+R  A ++HPD+N G+ E AE +FKEV  +YE +   
Sbjct: 3   YYTILGVSK----TASPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDA 57

Query: 236 RK 237
           +K
Sbjct: 58  QK 59

Length = 391

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 4/62 (6%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R      T+ EIK A++   KE+HPD++  N++ AE KFKE+  +YE +   
Sbjct: 6   YYEILGVSR----NATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDP 61

Query: 236 RK 237
           +K
Sbjct: 62  QK 63

Length = 369

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ +       + EIK+A+R  A ++HPD+N+GNKE +E KFKE   +YE ++  
Sbjct: 6   YYDILGVSK----SANDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDP 60

Query: 236 RK 237
           +K
Sbjct: 61  KK 62

Length = 372

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R      +E EIK ++R  A ++HPD+N G+KE AE  FKE   +YE +   
Sbjct: 6   YYEILGVTR----DASEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDP 60

Query: 236 RK 237
           +K
Sbjct: 61  KK 62

Length = 366

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 8/62 (12%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAIKQE 235
           Y  LG+ +      ++ EIK A+R  +K++HPD    NKE  AE K+KEV  +YE +   
Sbjct: 7   YDRLGVSK----DASQDEIKKAYRKLSKKYHPDI---NKEPGAEEKYKEVQEAYETLSDP 59

Query: 236 RK 237
           +K
Sbjct: 60  QK 61

Length = 380

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+ +      ++ EIK A+R  +K++HPD N+  +E A+ KFKE+  +YE +  +
Sbjct: 6   YYEVLGVSK----SASKDEIKKAYRKLSKKYHPDINK--EEGADEKFKEISEAYEVLSDD 59

Query: 236 RK 237
           +K
Sbjct: 60  QK 61

Length = 376

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LGL +      ++ EIK A+R  A ++HPD+N+GNKE AE+ FKE   +YE +  +
Sbjct: 5   YYEILGLSK----GASKDEIKKAYRKIAIKYHPDKNKGNKE-AESIFKEATEAYEVLIDD 59

Query: 236 RK 237
            K
Sbjct: 60  NK 61

Length = 365

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+DR       + EIK A+R  A+++HPD ++  +E AE KFKE+  +Y  +  +
Sbjct: 7   YYEVLGVDR----NADKKEIKKAYRKLARKYHPDVSE--EEGAEEKFKEISEAYAVLSDD 60

Query: 236 RK 237
            K
Sbjct: 61  EK 62

Length = 378

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 191 TEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           +  EIK A+R  A+E HPD N G+  AAE +FK V  +++ +    K
Sbjct: 22  SAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAK 67

Length = 392

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R      T+ EIK A+R  A+++HPD N+ N EA E KFKE+  +Y+ +   
Sbjct: 5   YYEILGVSR----NATQEEIKKAYRRLARKYHPDFNK-NPEAEE-KFKEINEAYQVLSDP 58

Query: 236 RK 237
            K
Sbjct: 59  EK 60

Length = 382

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+DR         E+K A+R  A+++HPD N+     AE KFKEV  +Y+ +   
Sbjct: 6   YYEVLGVDRNASVD----EVKKAYRKLARKYHPDVNK--APDAEDKFKEVKEAYDTLSDP 59

Query: 236 RK 237
           +K
Sbjct: 60  QK 61

Length = 371

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAI 232
           Y +LG+ R         E+K A+R  A+++HPD    NKE  AE +FKE+  +YE +
Sbjct: 6   YEILGVSRDADKD----ELKRAYRRLARKYHPDV---NKEPGAEDRFKEINRAYEVL 55

Length = 374

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ +      ++A++K A+   AK++HPD    + + AE KFKE+  +Y+ +K E
Sbjct: 5   YYQILGVSKTA----SQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDE 58

Query: 236 RK 237
           +K
Sbjct: 59  QK 60

Length = 372

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 42.9 bits (100), Expect = 6e-05
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVM 226
           L  +Y +LG+     A  +  EIK A+R  A ++HPD+N G+ + AE KFKE+ 
Sbjct: 5   LLDYYEILGV--PPNA--SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEIN 54

Length = 237

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEV 225
           +Y VLG+ +      +E EI+ A+R  AK++HPD N+     A  K  E+
Sbjct: 6   YYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNK--SPDAHDKMVEI 49

Length = 372

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 4/45 (8%)

Query: 194 EIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAIKQERK 237
            IKTA+R  A+++HPD    +KE  AEA+FKEV  ++E +  E++
Sbjct: 20  TIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVLSDEQR 61

Length = 306

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ R   A     EIK+A+R  A ++HPD+N+  ++ A  KF ++  +Y  +   
Sbjct: 4   YYELLGVSRTASA----DEIKSAYRKLALKYHPDRNK--EKGAAEKFAQINEAYAVLSDA 57

Query: 236 RK 237
            K
Sbjct: 58  EK 59

Length = 371

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 6/65 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y VLG+DR       E EIK AFR  AK++HPD+N      A + F E+  + + +   
Sbjct: 4   YYEVLGIDR----DADEQEIKKAFRKLAKKYHPDRN--KAPDAASIFAEINEANDVLSNP 57

Query: 236 RKDMN 240
           +K  N
Sbjct: 58  KKRAN 62

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEA-AEAKFKEVMVSYEAIKQ 234
           +Y +LGL +      +  +IK A+R  A ++HPD+   NKE  AE KFKE+  +Y  +  
Sbjct: 7   YYEILGLSK----DASVEDIKKAYRKLAMKYHPDK---NKEPDAEEKFKEISEAYAVLSD 59

Query: 235 ERK 237
             K
Sbjct: 60  AEK 62

Length = 377

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 6/62 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y++LG+ +      ++ EIK AF+  A+++HPD N+     AE KFKE+  +Y  +   
Sbjct: 6   YYAILGVPK----NASQDEIKKAFKKLARKYHPDVNK--SPGAEEKFKEINEAYTVLSDP 59

Query: 236 RK 237
            K
Sbjct: 60  EK 61

Length = 291

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 166 RESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEV 225
           R          Y VL L +      T +EIK A+R  A + HPD+  G+ E    KFKE+
Sbjct: 20  RRKREVDNEKLYEVLNLSK----DCTTSEIKKAYRKLAIKHHPDKG-GDPE----KFKEI 70

Query: 226 MVSYEAIKQERK 237
             +YE +    K
Sbjct: 71  SRAYEVLSDPEK 82

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.82
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.78
PRK14288	369	chaperone protein DnaJ; Provisional	99.7
PRK14296	372	chaperone protein DnaJ; Provisional	99.68
PRK14279	392	chaperone protein DnaJ; Provisional	99.66
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.66
PRK14286	372	chaperone protein DnaJ; Provisional	99.65
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.65
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.65
PRK14282	369	chaperone protein DnaJ; Provisional	99.65
PRK14277	386	chaperone protein DnaJ; Provisional	99.63
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.62
PRK14285	365	chaperone protein DnaJ; Provisional	99.62
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.62
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.62
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.62
PRK14295	389	chaperone protein DnaJ; Provisional	99.61
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.61
PRK14283	378	chaperone protein DnaJ; Provisional	99.61
PRK14297	380	chaperone protein DnaJ; Provisional	99.61
PRK14294	366	chaperone protein DnaJ; Provisional	99.61
PRK14287	371	chaperone protein DnaJ; Provisional	99.61
PRK14299	291	chaperone protein DnaJ; Provisional	99.6
PRK14301	373	chaperone protein DnaJ; Provisional	99.6
PRK14298	377	chaperone protein DnaJ; Provisional	99.6
PRK10767	371	chaperone protein DnaJ; Provisional	99.59
PRK14276	380	chaperone protein DnaJ; Provisional	99.59
PRK14284	391	chaperone protein DnaJ; Provisional	99.59
PRK14278	378	chaperone protein DnaJ; Provisional	99.59
PRK14281	397	chaperone protein DnaJ; Provisional	99.58
PRK14290	365	chaperone protein DnaJ; Provisional	99.58
PRK14291	382	chaperone protein DnaJ; Provisional	99.58
PRK14280	376	chaperone protein DnaJ; Provisional	99.58
PRK14289	386	chaperone protein DnaJ; Provisional	99.55
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.54
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.54
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.53
PRK14292	371	chaperone protein DnaJ; Provisional	99.52
PRK14300	372	chaperone protein DnaJ; Provisional	99.51
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.51
PRK14293	374	chaperone protein DnaJ; Provisional	99.48
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.48
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.46
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.45
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.44
PRK05014	171	hscB co-chaperone HscB; Provisional	99.4
PRK01356	166	hscB co-chaperone HscB; Provisional	99.39
PHA03102	153	Small T antigen; Reviewed	99.37
PRK00294	173	hscB co-chaperone HscB; Provisional	99.35
PTZ00100	116	DnaJ chaperone protein; Provisional	99.34
PRK03578	176	hscB co-chaperone HscB; Provisional	99.33
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.32
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.31
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.26
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.16
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.14
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.14
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.14
PRK01773	173	hscB co-chaperone HscB; Provisional	99.07
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.03
PHA02624	647	large T antigen; Provisional	98.99
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.92
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.86
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.62
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.28
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.21
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.89
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.49
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.91
KOG0431	453	consensus Auxilin-like protein and related protein	95.95
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.74
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	95.42
PF13446	62	RPT: A repeated domain in UCH-protein	92.73
PF09333	98	ATG_C: ATG C terminal domain; InterPro: IPR015412	80.38

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8.6e-21  Score=177.41  Aligned_cols=63  Identities=43%  Similarity=0.713  Sum_probs=59.1

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      ..|||+||||+++|    |.+|||+|||+||++||||+|+++++ |+++|++|++||+||+||++|+.
T Consensus         3 ~~dyYeiLGV~k~A----s~~EIKkAYRkLA~kyHPD~n~g~~~-AeeKFKEI~eAYEVLsD~eKRa~   65 (371)
T COG0484           3 KRDYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNPGDKE-AEEKFKEINEAYEVLSDPEKRAA   65 (371)
T ss_pred             ccchhhhcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhCCHHHHHH
Confidence            36999999999999    99999999999999999999997655 99999999999999999999974

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=1.6e-19  Score=166.02  Aligned_cols=64  Identities=33%  Similarity=0.593  Sum_probs=60.4

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+|||+||||+.+|    +..|||+|||+||++||||||++++. |.++|++|+.||+||+||.+|.
T Consensus        13 ~~~rDfYelLgV~k~A----sd~eIKkAYRKLALk~HPDkNpddp~-A~e~F~~in~AYEVLsDpekRk   76 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNA----SDQEIKKAYRKLALKYHPDKNPDDPN-ANEKFKEINAAYEVLSDPEKRK   76 (336)
T ss_pred             hcCCCHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHHHHhcCHHHHH
Confidence            3457999999999999    99999999999999999999999876 9999999999999999999985

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.6e-17  Score=156.00  Aligned_cols=61  Identities=34%  Similarity=0.626  Sum_probs=57.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|+.+.+ |+++|++|++||+||+||.+|.
T Consensus         3 ~dyY~vLgv~~~A----s~~eIkkayrkla~k~HPD~~~~~~~-a~~~f~~i~~AYevLsd~~kR~   63 (369)
T PRK14288          3 LSYYEILEVEKHS----NQETIKKSYRKLALKYHPDRNAGDKE-AEEKFKLINEAYGVLSDEKKRA   63 (369)
T ss_pred             CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCccH-HHHHHHHHHHHHHHhccHHHHH
Confidence            6999999999999    99999999999999999999986544 8999999999999999999985

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=4.8e-17  Score=152.96  Aligned_cols=60  Identities=32%  Similarity=0.535  Sum_probs=56.3

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|++  ..|+++|++|++||+||+||.+|.
T Consensus         4 ~dyY~~Lgv~~~a----~~~eik~ayrkla~~~HPD~n~~--~~a~~~F~~i~~AyevLsD~~KR~   63 (372)
T PRK14296          4 KDYYEVLGVSKTA----SEQEIRQAYRKLAKQYHPDLNKS--PDAHDKMVEINEAADVLLDKDKRK   63 (372)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--chHHHHHHHHHHHHHHhcCHHHhh
Confidence            6999999999999    99999999999999999999975  348999999999999999999985

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=9e-17  Score=152.03  Aligned_cols=61  Identities=34%  Similarity=0.559  Sum_probs=57.4

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|+++++ |+++|++|++||+||+||.+|.
T Consensus         9 ~Dyy~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vLsD~~KR~   69 (392)
T PRK14279          9 KDFYKELGVSSDA----SAEEIKKAYRKLARELHPDANPGDPA-AEERFKAVSEAHDVLSDPAKRK   69 (392)
T ss_pred             cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCChH-HHHHHHHHHHHHHHhcchhhhh
Confidence            6999999999999    99999999999999999999986544 8999999999999999999995

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1e-16  Score=148.40  Aligned_cols=59  Identities=37%  Similarity=0.610  Sum_probs=56.4

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+|+||||+++|    |.+|||+|||+||++||||||++    +.++|++|..||+||+||++|.
T Consensus         3 ~~~~y~il~v~~~A----s~~eikkayrkla~k~HpDkn~~----~~ekfkei~~AyevLsd~ekr~   61 (337)
T KOG0712|consen    3 NTKLYDILGVSPDA----SEEEIKKAYRKLALKYHPDKNPD----AGEKFKEISQAYEVLSDPEKRE   61 (337)
T ss_pred             ccccceeeccCCCc----CHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHHhcCHHHHH
Confidence            46899999999999    99999999999999999999998    7899999999999999999985

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.3e-16  Score=149.98  Aligned_cols=61  Identities=41%  Similarity=0.750  Sum_probs=57.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|+++.+ |+++|++|++||+||+||.+|.
T Consensus         4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~   64 (372)
T PRK14286          4 RSYYDILGVSKSA----NDEEIKSAYRKLAIKYHPDKNKGNKE-SEEKFKEATEAYEILRDPKKRQ   64 (372)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchH-HHHHHHHHHHHHHHhccHHHHH
Confidence            6999999999999    99999999999999999999986544 8999999999999999999985

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.65  E-value=3e-16  Score=109.70  Aligned_cols=60  Identities=43%  Similarity=0.715  Sum_probs=54.4

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhh
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK  237 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~k  237 (241)
                      .+||+||||++++    +.++||++|+++++++|||++++....+.+.|..|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~----~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDA----SLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence            3799999999998    99999999999999999999986445589999999999999999853

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.65  E-value=2.5e-16  Score=111.94  Aligned_cols=61  Identities=34%  Similarity=0.658  Sum_probs=56.7

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ++|+||||++++    +.++|+++|+++++++|||++..+...+.+.|..|++||++|+||.+|.
T Consensus         1 ~~y~iLgl~~~~----~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~   61 (64)
T PF00226_consen    1 NPYEILGLPPDA----SDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR   61 (64)
T ss_dssp             HHHHHCTSTTTS----SHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCC----CHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence            589999999999    9999999999999999999988765558999999999999999999885

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=1.9e-16  Score=148.69  Aligned_cols=62  Identities=39%  Similarity=0.680  Sum_probs=57.8

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|+.+...|+++|++|++||++|+||.+|.
T Consensus         4 ~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~   65 (369)
T PRK14282          4 KDYYEILGVSRNA----TQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA   65 (369)
T ss_pred             CChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence            6999999999999    9999999999999999999998654458999999999999999999985

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=4.1e-16  Score=147.17  Aligned_cols=61  Identities=49%  Similarity=0.778  Sum_probs=57.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus         5 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~   65 (386)
T PRK14277          5 KDYYEILGVDRNA----TEEEIKKAYRRLAKKYHPDLNPGDKE-AEQKFKEINEAYEILSDPQKRA   65 (386)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchH-HHHHHHHHHHHHHHhCCHHHHH
Confidence            6999999999999    99999999999999999999986544 8899999999999999999985

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.62  E-value=4e-16  Score=148.97  Aligned_cols=59  Identities=36%  Similarity=0.521  Sum_probs=54.9

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...|||+||||+++|    |.+|||+|||+||++||||+|++     .++|++|++||+||+||.+|.
T Consensus        26 ~~~d~Y~vLGV~~~A----s~~eIKkAYrkla~k~HPDk~~~-----~e~F~~i~~AYevLsD~~kR~   84 (421)
T PTZ00037         26 DNEKLYEVLNLSKDC----TTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRK   84 (421)
T ss_pred             cchhHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCch-----HHHHHHHHHHHHHhccHHHHH
Confidence            357999999999999    99999999999999999999863     489999999999999999985

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=4.6e-16  Score=145.96  Aligned_cols=61  Identities=43%  Similarity=0.708  Sum_probs=57.0

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.++||+|||+|+++||||+|+++.+ |.++|++|++||++|+||.+|.
T Consensus         3 ~d~y~iLgv~~~a----~~~eIk~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~   63 (365)
T PRK14285          3 RDYYEILGLSKGA----SKDEIKKAYRKIAIKYHPDKNKGNKE-AESIFKEATEAYEVLIDDNKRA   63 (365)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHcCcchhH
Confidence            5999999999999    99999999999999999999987544 7899999999999999999985

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.62  E-value=1e-15  Score=105.03  Aligned_cols=55  Identities=38%  Similarity=0.672  Sum_probs=51.2

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcC
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQ  234 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~d  234 (241)
                      +||+||||++++    |.++|+++|++|++++|||++++. +.+.+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~----~~~~ik~~y~~l~~~~HPD~~~~~-~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDA----SDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHhcC
Confidence            689999999998    999999999999999999999865 4589999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=4.7e-16  Score=139.53  Aligned_cols=62  Identities=40%  Similarity=0.605  Sum_probs=58.8

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..++|+||||++++    |.++||++||+|+++||||+++++++ +..+|++||+||.||+||.+|.
T Consensus        30 ~~~LYdVLgl~k~a----t~d~IKKaYR~L~~k~HPD~~gd~P~-~~dkf~eIN~Ay~ILsD~~kR~   91 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTA----TKDEIKKAYRKLALKYHPDKNGDNPE-ATDKFKEINTAYAILSDPTKRN   91 (279)
T ss_pred             hhHHHHHhCCCccc----chHHHHHHHHHHHHHhCCCcCCCCch-hHHHHHHHHHHHHHhcChhhhh
Confidence            46899999999999    99999999999999999999999865 8999999999999999999986

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.62  E-value=5e-16  Score=147.54  Aligned_cols=65  Identities=29%  Similarity=0.553  Sum_probs=61.3

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .....||+||||..++    +..+||++||+|||+||||+|++..+.|++.|+.|+.||+||+||..|+
T Consensus         5 ~~~~c~YE~L~v~~~a----~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~   69 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDA----DDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA   69 (508)
T ss_pred             hhhhHHHHHhcccccC----CHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence            3457899999999999    9999999999999999999999988889999999999999999999885

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=6.1e-16  Score=146.25  Aligned_cols=61  Identities=44%  Similarity=0.770  Sum_probs=56.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus         9 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~   69 (389)
T PRK14295          9 KDYYKVLGVPKDA----TEAEIKKAYRKLAREYHPDANKGDAK-AEERFKEISEAYDVLSDEKKRK   69 (389)
T ss_pred             cCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchh-HHHHHHHHHHHHHHHCchhhHH
Confidence            5999999999999    99999999999999999999986543 8999999999999999999885

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=7.7e-16  Score=140.80  Aligned_cols=62  Identities=39%  Similarity=0.673  Sum_probs=59.7

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..|||+||||++++    |..+|++|||.++++||||||++++. |.++|+.|.+||+||+|+.+|.
T Consensus         4 ~~dyY~lLgi~~~a----t~~eIkKaYr~kaL~~HPDKNp~dP~-A~ekFq~L~eAy~VL~D~~~R~   65 (296)
T KOG0691|consen    4 DTDYYDLLGISEDA----TDAEIKKAYRKKALQYHPDKNPGDPQ-AAEKFQELSEAYEVLSDEESRA   65 (296)
T ss_pred             cchHHHHhCCCCCC----CHHHHHHHHHHHHHhcCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence            47999999999999    99999999999999999999999988 9999999999999999999985

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=7.4e-16  Score=145.05  Aligned_cols=61  Identities=39%  Similarity=0.665  Sum_probs=56.8

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..|||+||||+++|    |.+|||+|||+||++||||+|++  +.|+++|++|++||++|+||.+|.
T Consensus         4 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~~Lsd~~kR~   64 (378)
T PRK14283          4 KRDYYEVLGVDRNA----DKKEIKKAYRKLARKYHPDVSEE--EGAEEKFKEISEAYAVLSDDEKRQ   64 (378)
T ss_pred             cCChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhchhHHHH
Confidence            46999999999999    99999999999999999999975  348999999999999999999985

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=9.5e-16  Score=144.42  Aligned_cols=61  Identities=46%  Similarity=0.768  Sum_probs=57.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.++||+|||+||++||||+++++.+ |+++|++|++||++|+||.+|.
T Consensus         4 ~d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~   64 (380)
T PRK14297          4 KDYYEVLGLEKGA----SDDEIKKAFRKLAIKYHPDKNKGNKE-AEEKFKEINEAYQVLSDPQKKA   64 (380)
T ss_pred             CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHhcCHhhhC
Confidence            5999999999999    99999999999999999999986544 8999999999999999999986

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=9.1e-16  Score=143.90  Aligned_cols=61  Identities=41%  Similarity=0.686  Sum_probs=57.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+||++||||+++++.+ ++++|++|++||+||+||.+|.
T Consensus         4 ~d~y~~lgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~-~~~~f~~~~~Ay~vL~d~~~r~   64 (366)
T PRK14294          4 RDYYEILGVTRDA----SEEEIKKSYRKLAMKYHPDRNPGDKE-AEELFKEAAEAYEVLSDPKKRG   64 (366)
T ss_pred             CChHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchH-HHHHHHHHHHHHHHhccHHHHH
Confidence            6999999999999    99999999999999999999986544 7899999999999999999985

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=8.9e-16  Score=144.29  Aligned_cols=60  Identities=40%  Similarity=0.681  Sum_probs=56.0

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|++  +.|+++|++|++||++|+||.+|.
T Consensus         4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~~~~~f~~i~~Ay~~L~d~~kR~   63 (371)
T PRK14287          4 RDYYEVLGVDRNA----SVDEVKKAYRKLARKYHPDVNKA--PDAEDKFKEVKEAYDTLSDPQKKA   63 (371)
T ss_pred             CCHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCcHhHHH
Confidence            5999999999999    99999999999999999999974  347899999999999999999985

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=9.7e-16  Score=139.67  Aligned_cols=60  Identities=35%  Similarity=0.635  Sum_probs=55.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.++||+|||+||++||||++++  ..++++|++|++||++|+||.+|.
T Consensus         4 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~kr~   63 (291)
T PRK14299          4 KDYYAILGVPKNA----SQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRR   63 (291)
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhcCHHHHH
Confidence            6999999999999    99999999999999999999974  347899999999999999999884

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.1e-15  Score=143.89  Aligned_cols=61  Identities=44%  Similarity=0.695  Sum_probs=57.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+||++||||+++++.+ |+++|++|++||+||+||.+|.
T Consensus         4 ~~~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kr~   64 (373)
T PRK14301          4 RDYYEVLGVSRDA----SEDEIKKAYRKLALQYHPDRNPDNPE-AEQKFKEAAEAYEVLRDAEKRA   64 (373)
T ss_pred             CChHHhcCCCCCC----CHHHHHHHHHHHHHHhCCCcCCCChH-HHHHHHHHHHHHHHhcchhhhh
Confidence            6999999999999    99999999999999999999987544 8899999999999999999985

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.1e-15  Score=143.88  Aligned_cols=60  Identities=35%  Similarity=0.615  Sum_probs=56.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.+|||+|||+||++||||+|++  ..++++|++|++||++|+||.+|.
T Consensus         5 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~kR~   64 (377)
T PRK14298          5 RDYYEILGLSKDA----SVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRA   64 (377)
T ss_pred             CCHHHhhCCCCCC----CHHHHHHHHHHHHHHhCccccCC--hhHHHHHHHHHHHHHHhcchHhhh
Confidence            6999999999999    99999999999999999999974  347899999999999999999985

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.5e-15  Score=142.55  Aligned_cols=61  Identities=46%  Similarity=0.751  Sum_probs=57.0

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.++||+|||+||++||||+|+++.. |+++|++|++||++|+||.+|.
T Consensus         4 ~d~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~r~   64 (371)
T PRK10767          4 RDYYEVLGVSRNA----SEDEIKKAYRKLAMKYHPDRNPGDKE-AEEKFKEIKEAYEVLSDPQKRA   64 (371)
T ss_pred             CChHHhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCcHH-HHHHHHHHHHHHHHhcchhhhh
Confidence            6999999999999    99999999999999999999986544 8899999999999999999885

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.3e-15  Score=143.49  Aligned_cols=60  Identities=37%  Similarity=0.632  Sum_probs=56.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+||++||||+|++  ..|+++|++|++||++|+||.+|.
T Consensus         4 ~d~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~   63 (380)
T PRK14276          4 TEYYDRLGVSKDA----SQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRA   63 (380)
T ss_pred             CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhcCHhhhh
Confidence            6999999999999    99999999999999999999975  237899999999999999999985

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.3e-15  Score=143.95  Aligned_cols=60  Identities=40%  Similarity=0.718  Sum_probs=56.4

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      |||+||||+++|    |.++||+|||+||++||||+|+++.. |+++|++|++||++|+||.+|.
T Consensus         2 d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~kR~   61 (391)
T PRK14284          2 DYYTILGVSKTA----SPEEIKKAYRKLAVKYHPDKNPGDAE-AEKRFKEVSEAYEVLSDAQKRE   61 (391)
T ss_pred             CHHHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchH-HHHHHHHHHHHHHHhcCHHHHH
Confidence            899999999999    99999999999999999999987544 8999999999999999999885

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=1.5e-15  Score=143.02  Aligned_cols=60  Identities=43%  Similarity=0.708  Sum_probs=56.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.++||+|||+||++||||+|++  +.|+++|++|++||+||+||.+|.
T Consensus         3 ~d~y~iLgv~~~a----~~~eik~ayr~la~~~hpD~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~   62 (378)
T PRK14278          3 RDYYGLLGVSRNA----SDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRR   62 (378)
T ss_pred             CCcceecCCCCCC----CHHHHHHHHHHHHHHHCCCCCCc--HHHHHHHHHHHHHHHHhchhhhhh
Confidence            5899999999999    99999999999999999999984  348899999999999999999985

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=143.31  Aligned_cols=61  Identities=44%  Similarity=0.689  Sum_probs=56.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+||++||||+++++.+ |+++|++|++||++|+||.+|.
T Consensus         3 ~d~y~iLgv~~~a----~~~eikkayr~la~~~HPD~~~~~~~-a~~~f~~i~~Ay~vL~d~~~r~   63 (397)
T PRK14281          3 RDYYEVLGVSRSA----DKDEIKKAYRKLALKYHPDKNPDNKE-AEEHFKEVNEAYEVLSNDDKRR   63 (397)
T ss_pred             CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCcCCCchH-HHHHHHHHHHHHHHhhhhhhhh
Confidence            5999999999999    99999999999999999999986544 7899999999999999999885

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.2e-15  Score=141.26  Aligned_cols=62  Identities=44%  Similarity=0.730  Sum_probs=58.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.+|||+|||+|+++||||+++++.+.|.++|++|++||++|+||.+|.
T Consensus         3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~   64 (365)
T PRK14290          3 KDYYKILGVDRNA----SQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR   64 (365)
T ss_pred             CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence            5999999999999    9999999999999999999998776568999999999999999999885

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=142.71  Aligned_cols=60  Identities=38%  Similarity=0.657  Sum_probs=56.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+||++||||+|++  +.++++|++|++||++|+||.+|.
T Consensus         3 ~d~Y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vLsd~~kR~   62 (382)
T PRK14291          3 KDYYEILGVSRNA----TQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRK   62 (382)
T ss_pred             CCHHHhhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhcCHHHHH
Confidence            5999999999999    99999999999999999999976  337899999999999999999985

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.3e-15  Score=141.64  Aligned_cols=60  Identities=38%  Similarity=0.698  Sum_probs=56.0

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||+++|    |.++||+|||+||++||||++++  ..|+++|++|++||++|+||.+|.
T Consensus         4 ~~~y~iLgv~~~a----~~~eik~ayr~la~~~HpD~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~   63 (376)
T PRK14280          4 RDYYEVLGVSKSA----SKDEIKKAYRKLSKKYHPDINKE--EGADEKFKEISEAYEVLSDDQKRA   63 (376)
T ss_pred             CChHHhhCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHhccHhHHH
Confidence            5999999999999    99999999999999999999975  237899999999999999999985

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=6.4e-15  Score=138.98  Aligned_cols=61  Identities=44%  Similarity=0.722  Sum_probs=57.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.+|||+|||+||++||||+++++.+ |.++|++|++||++|+||.+|.
T Consensus         5 ~~~y~~Lgv~~~a----~~~eik~ayr~la~~~HpD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~   65 (386)
T PRK14289          5 RDYYEVLGVSKTA----TVDEIKKAYRKKAIQYHPDKNPGDKE-AEEKFKEAAEAYDVLSDPDKRS   65 (386)
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCChH-HHHHHHHHHHHHHHhcCHHHHH
Confidence            6999999999999    99999999999999999999987654 8999999999999999999885

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.54  E-value=7e-15  Score=134.83  Aligned_cols=61  Identities=34%  Similarity=0.619  Sum_probs=56.2

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..|||+||||++++    |.++||+|||+||++||||++++.  .++++|++|++||++|+||.+|.
T Consensus         3 ~~d~y~~Lgv~~~a----~~~eik~ayr~la~k~HPD~~~~~--~~~~~f~~i~~Ay~~L~~~~kr~   63 (306)
T PRK10266          3 LKDYYAIMGVKPTD----DLKTIKTAYRRLARKYHPDVSKEP--DAEARFKEVAEAWEVLSDEQRRA   63 (306)
T ss_pred             cCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHhhhHHHHH
Confidence            36999999999999    999999999999999999998752  48999999999999999999884

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=7.1e-15  Score=134.22  Aligned_cols=60  Identities=45%  Similarity=0.687  Sum_probs=56.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |..|||+||++||++||||.|.+.  .|.++|++|.+||++|+|+.+|.
T Consensus        43 ~d~Y~vLgv~~~A----t~~EIK~Af~~LaKkyHPD~n~~~--~a~~kF~eI~~AYEiLsd~eKR~  102 (288)
T KOG0715|consen   43 EDYYKVLGVSRNA----TLSEIKSAFRKLAKKYHPDVNKDK--EASKKFKEISEAYEILSDEEKRQ  102 (288)
T ss_pred             cchhhhhCcCCCC----CHHHHHHHHHHHHHhhCCCCCCCc--chhhHHHHHHHHHHHhcCHHHHH
Confidence            4999999999999    999999999999999999999886  48999999999999999999985

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.53  E-value=1e-14  Score=136.02  Aligned_cols=59  Identities=41%  Similarity=0.705  Sum_probs=54.7

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      |||+||||++++    |.++||+|||+||++||||+++.  ..+.++|++|++||++|+|+.+|.
T Consensus         1 d~y~~Lgv~~~a----~~~~ik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~vL~d~~~R~   59 (354)
T TIGR02349         1 DYYEILGVSKDA----SEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRA   59 (354)
T ss_pred             ChHHhCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--ccHHHHHHHHHHHHHHhhChHHHH
Confidence            699999999999    99999999999999999999973  337899999999999999999885

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.3e-14  Score=136.19  Aligned_cols=60  Identities=32%  Similarity=0.592  Sum_probs=55.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+|+++||||++++  ..+.++|++|++||++|+||.+|.
T Consensus         2 ~d~y~~Lgv~~~a----~~~~ik~ayr~l~~~~hpD~~~~--~~a~~~~~~i~~Ay~vL~d~~~r~   61 (371)
T PRK14292          2 MDYYELLGVSRTA----SADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRA   61 (371)
T ss_pred             CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence            5899999999999    99999999999999999999974  348899999999999999999885

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1.6e-14  Score=135.81  Aligned_cols=60  Identities=35%  Similarity=0.686  Sum_probs=55.6

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.+|||+|||+|+++||||++++  ..++++|++|++||++|+||.+|.
T Consensus         3 ~~~y~iLgv~~~a----s~~eik~ayr~la~~~HPD~~~~--~~~~~~f~~i~~Ay~~L~d~~~r~   62 (372)
T PRK14300          3 QDYYQILGVSKTA----SQADLKKAYLKLAKQYHPDTTDA--KDAEKKFKEINAAYDVLKDEQKRA   62 (372)
T ss_pred             CChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--cCHHHHHHHHHHHHHHhhhHhHhh
Confidence            5999999999999    99999999999999999999874  237889999999999999999885

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3e-14  Score=119.11  Aligned_cols=64  Identities=36%  Similarity=0.609  Sum_probs=58.9

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+||+||||++++    +..+|+++||+++++||||+++.+...+.++|+.|++||++|+|+.+|.
T Consensus         4 ~~~~~y~iLgv~~~a----s~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~   67 (237)
T COG2214           4 DLLDYYEILGVPPNA----SLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA   67 (237)
T ss_pred             hhhhHHHHhCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence            457999999999999    9999999999999999999999765458999999999999999999885

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.48  E-value=3.6e-14  Score=133.47  Aligned_cols=60  Identities=33%  Similarity=0.625  Sum_probs=55.7

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+|+++||||++++  ..++++|+.|++||++|+||.+|.
T Consensus         3 ~d~y~vLgv~~~a----~~~eik~ayr~la~~~HPD~~~~--~~a~~~f~~i~~Ay~vL~~~~~R~   62 (374)
T PRK14293          3 ADYYEILGVSRDA----DKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRA   62 (374)
T ss_pred             CChhhhcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC--cCHHHHHHHHHHHHHHHhchHHHH
Confidence            5899999999999    99999999999999999999975  237899999999999999999885

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.48  E-value=5.3e-14  Score=143.62  Aligned_cols=64  Identities=22%  Similarity=0.343  Sum_probs=58.7

Q ss_pred             CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+...+||+||||+++|    |..+||+|||+||++||||+++++  .|..+|+.|++||+||+||.+|.
T Consensus       569 ~~~d~dYYdILGVs~dA----S~~EIKKAYRKLAlkyHPDKN~~~--~A~ekFq~I~EAYeVLSDp~kRk  632 (1136)
T PTZ00341        569 EIPDTLFYDILGVGVNA----DMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKK  632 (1136)
T ss_pred             cCCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCc--hHHHHHHHHHHHHHHhCCHHHHH
Confidence            44557999999999999    999999999999999999999875  37889999999999999999985

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=6.6e-14  Score=133.45  Aligned_cols=63  Identities=35%  Similarity=0.585  Sum_probs=58.3

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~--~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..++|.+|+|+++|    |.+||++|||++++.|||||..+  .++.|+++|+.|..||+||+||.+|.
T Consensus         8 e~e~Ya~LNlpkdA----t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa   72 (546)
T KOG0718|consen    8 EIELYALLNLPKDA----TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA   72 (546)
T ss_pred             hhhHHHHhCCCccc----CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            35999999999999    99999999999999999999863  46679999999999999999999986

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=9.4e-14  Score=121.46  Aligned_cols=62  Identities=32%  Similarity=0.572  Sum_probs=56.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      -|+|+||||++++    |..|||+|||+|++++||||++.. +..++.|..|.+||+.|+|+..|.+
T Consensus        99 fDPyEILGl~pga----s~~eIKkaYR~LSik~HPDK~~~~-~~~e~~~~~I~KAY~aLTD~~sreN  160 (230)
T KOG0721|consen   99 FDPYEILGLDPGA----SEKEIKKAYRRLSIKYHPDKQPPE-EGDEEFFEAIAKAYQALTDKKSREN  160 (230)
T ss_pred             CCcHHhhCCCCCC----CHHHHHHHHHHhhhhhCCCcCCCc-chhHHHHHHHHHHHHHhcchhhHHH
Confidence            5899999999999    999999999999999999998764 3368899999999999999988753

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.1e-13  Score=122.36  Aligned_cols=62  Identities=34%  Similarity=0.596  Sum_probs=56.8

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-ChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG-NKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~-~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .++|+||||..++    |..+|++||++|++.+|||+++. +...|+++|+.|+.||.||+|+++|.
T Consensus        14 ~d~YevLGVer~a----~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~   76 (264)
T KOG0719|consen   14 KDLYEVLGVERDA----TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA   76 (264)
T ss_pred             cCHHHHhhhcccC----CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4999999999999    99999999999999999999852 34459999999999999999999985

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.40  E-value=4.7e-13  Score=113.81  Aligned_cols=63  Identities=16%  Similarity=0.298  Sum_probs=54.6

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~----~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +||+||||++.+  .++..+|+++|++|++++|||+..+..    ..+.+.|..||+||++|+||.+|.
T Consensus         2 ~yf~llgl~~~~--~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra   68 (171)
T PRK05014          2 DYFTLFGLPARY--DIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA   68 (171)
T ss_pred             CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence            799999999964  448999999999999999999976432    236789999999999999999885

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.39  E-value=7.1e-13  Score=112.31  Aligned_cols=64  Identities=19%  Similarity=0.272  Sum_probs=54.5

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+||+||||++..  .++..+|+++|++|++++|||++.+..  ..+...+..||+||++|+||.+|+
T Consensus         2 ~~yf~llgl~~~f--~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra   67 (166)
T PRK01356          2 QNYFQLLGLPQEY--NIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA   67 (166)
T ss_pred             CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5899999999964  458999999999999999999986532  224567889999999999999885

>PHA03102 Small T antigen; Reviewed

Probab=99.37  E-value=7.3e-13  Score=110.96  Aligned_cols=60  Identities=28%  Similarity=0.432  Sum_probs=53.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      +.+|+||||++++-  .|.++||+|||++++++|||++++     .++|++|++||++|+|+.+|..
T Consensus         5 ~~l~~vLGl~~~A~--~s~~eIKkAYr~la~~~HPDkgg~-----~e~~k~in~Ay~~L~d~~~r~~   64 (153)
T PHA03102          5 KELMDLLGLPRSAW--GNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLR   64 (153)
T ss_pred             HHHHHHcCCCCCCC--CCHHHHHHHHHHHHHHHCcCCCch-----hHHHHHHHHHHHHHhhHHHhcc
Confidence            67999999988762  289999999999999999999764     5799999999999999998753

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.35  E-value=1.8e-12  Score=110.64  Aligned_cols=65  Identities=18%  Similarity=0.313  Sum_probs=56.7

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~----~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+||++|||++..  .++..+|+++||+|++++|||++.+..    ..+.+.|..||+||++|+||.+|+
T Consensus         3 ~~~~F~l~~l~~~f--~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra   71 (173)
T PRK00294          3 TPCHFALFDLQPSF--RLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA   71 (173)
T ss_pred             CCChhhhcCcCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence            46899999999865  668999999999999999999986532    236788999999999999999886

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.34  E-value=1.9e-12  Score=103.81  Aligned_cols=53  Identities=19%  Similarity=0.245  Sum_probs=48.0

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIK  233 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~  233 (241)
                      +..++|+||||++++    |.++|+++||+|++++|||++++     .+.|++|++||++|.
T Consensus        63 s~~eAy~ILGv~~~A----s~~eIkkaYRrLa~~~HPDkgGs-----~~~~~kIneAyevL~  115 (116)
T PTZ00100         63 SKSEAYKILNISPTA----SKERIREAHKQLMLRNHPDNGGS-----TYIASKVNEAKDLLL  115 (116)
T ss_pred             CHHHHHHHcCCCCCC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHh
Confidence            447999999999999    99999999999999999999643     578999999999995

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.33  E-value=2.9e-12  Score=109.53  Aligned_cols=64  Identities=22%  Similarity=0.370  Sum_probs=54.6

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+||+||||++..  .++..+|+++|++|++++|||++....+    .+.+.+..||+||++|+||.+|+
T Consensus         6 ~dyf~llglp~~f--~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra   73 (176)
T PRK03578          6 DDHFSLFGLPARF--ALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA   73 (176)
T ss_pred             CCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence            6999999999964  4589999999999999999999865322    24566799999999999999886

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.32  E-value=1.9e-12  Score=117.03  Aligned_cols=61  Identities=36%  Similarity=0.547  Sum_probs=53.6

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C---hHHHHHHHHHHHHHHHHhcCh
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQE  235 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~---~---~~~a~ekF~~I~~AYevL~dp  235 (241)
                      .+..++|+||||++++    |.++||++||+|+++||||++.+   +   .+.++++|++|++||++|+..
T Consensus       197 ~~~~~ay~vLgv~~~a----s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        197 PTLEDAYKVLGVSESD----DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CcHHhHHHHcCCCCCC----CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            4568999999999999    99999999999999999999642   1   245899999999999999864

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.31  E-value=2.3e-12  Score=129.34  Aligned_cols=60  Identities=38%  Similarity=0.619  Sum_probs=55.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    +..+||++||+|+++||||++++  ..+..+|++|++||++|+||.+|.
T Consensus         2 ~DYYeVLGVs~dA----S~eEIKKAYRKLAKKyHPDKn~~--~eAeekFqeINEAYEVLSDP~KRa   61 (871)
T TIGR03835         2 RDYYEVLGIDRDA----DEQEIKKAFRKLAKKYHPDRNKA--PDAASIFAEINEANDVLSNPKKRA   61 (871)
T ss_pred             CChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hhHHHHHHHHHHHHHHhCCHHHHH
Confidence            5899999999999    99999999999999999999876  347889999999999999999886

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.26  E-value=2.4e-11  Score=113.46  Aligned_cols=64  Identities=31%  Similarity=0.524  Sum_probs=58.6

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~--~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .+|||+||||.+++    ++.||.+|||++|.+||||-..+.  +..|+.+|.-|-.|-+||+||++|.+
T Consensus       393 kRDYYKILGVkRnA----sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq  458 (504)
T KOG0624|consen  393 KRDYYKILGVKRNA----SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ  458 (504)
T ss_pred             cchHHHHhhhcccc----cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence            36999999999999    999999999999999999998765  44599999999999999999999864

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=3.2e-11  Score=115.08  Aligned_cols=62  Identities=35%  Similarity=0.519  Sum_probs=57.5

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +..|+|.+|||++++    +.++||+.||++|+..|||||..  +.|++.|+.|..||++|+|+.+|.
T Consensus       233 ~~~daYsvlGl~~d~----sd~~lKk~Yrk~A~LVhPDKn~~--~~A~Eafk~Lq~Afevig~~~kR~  294 (490)
T KOG0720|consen  233 NILDAYSALGLPSDC----SDADLKKNYRKKAMLVHPDKNMI--PRAEEAFKKLQVAFEVIGDSVKRK  294 (490)
T ss_pred             cCCCchhhcCCCCCC----CHHHHHHHHHhhceEeCCCccCC--hhHHHHHHHHHHHHHHhcchhhhh
Confidence            357999999999998    99999999999999999999985  448999999999999999999885

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=2.1e-11  Score=109.29  Aligned_cols=62  Identities=29%  Similarity=0.555  Sum_probs=56.6

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+|+|+||||.+++    ++.+|.+|||+||++||||++++..  +.+.|+.|-.||++|+|...|.
T Consensus        31 G~enCYdVLgV~Rea----~KseIakAYRqLARrhHPDr~r~~e--~k~~F~~iAtayeilkd~e~rt   92 (329)
T KOG0722|consen   31 GAENCYDVLGVAREA----NKSEIAKAYRQLARRHHPDRNRDPE--SKKLFVKIATAYEILKDNETRT   92 (329)
T ss_pred             cchhHHHHhhhhhhc----cHHHHHHHHHHHHHHhCCcccCCch--hhhhhhhhhcccccccchhhHH
Confidence            347999999999999    9999999999999999999998754  4689999999999999998775

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.3e-11  Score=105.61  Aligned_cols=63  Identities=41%  Similarity=0.682  Sum_probs=56.4

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .|+|+||+|.+.+    +..+|++||+++++++|||+++.....+..+|++|.+||++|+|+.+|..
T Consensus         3 ~d~~~~l~i~~~a----s~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~   65 (306)
T KOG0714|consen    3 KDYYKILGIARSA----SEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKI   65 (306)
T ss_pred             ccHHHHhCccccc----cHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhh
Confidence            6899999999988    88899999999999999999887644466689999999999999998863

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.2e-11  Score=114.25  Aligned_cols=65  Identities=38%  Similarity=0.593  Sum_probs=60.0

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ....|+|.||||...+    +..+|+++||++++.+|||++......++.+|++|-+||.+|+||.+|.
T Consensus       370 SkRkd~ykilGi~~~a----s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~  434 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNA----SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRV  434 (486)
T ss_pred             hhhhhHHHHhhhhhhc----ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHh
Confidence            3457999999999999    9999999999999999999998886669999999999999999999875

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.07  E-value=3.3e-10  Score=96.74  Aligned_cols=65  Identities=18%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~----~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +.|||++|||++..  .++...|++.|+.|.+++|||+....    ...+.+....||+||.+|+||.+|+
T Consensus         1 ~~nyF~lf~lp~~F--~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA   69 (173)
T PRK01773          1 MNNPFALFDLPVDF--QLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA   69 (173)
T ss_pred             CCChHHhcCCCCCC--CCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence            36899999999964  67999999999999999999997543    2346777899999999999999986

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.5e-10  Score=98.36  Aligned_cols=62  Identities=26%  Similarity=0.431  Sum_probs=58.3

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  238 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR  238 (241)
                      ..++|+||.|.|..    +.++||+.||+|++..|||||+++.+.|...|--|.+||..|-|+..|
T Consensus        52 nLNpfeVLqIdpev----~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~r  113 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEV----TDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIR  113 (250)
T ss_pred             ccChHHHHhcCCCC----CHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            36899999999998    999999999999999999999999888999999999999999998744

>PHA02624 large T antigen; Provisional

Probab=98.99  E-value=5.6e-10  Score=110.74  Aligned_cols=60  Identities=25%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..++|+||||++++  -.+..+||+|||+++++||||++++     +++|++|+.||++|+|+.++.
T Consensus        10 ~~elyelLGL~~~A--~gs~~eIKkAYRkLAkkyHPDKgGd-----eekfk~Ln~AYevL~d~~k~~   69 (647)
T PHA02624         10 SKELMDLLGLPMAA--WGNLPLMRKAYLRKCKEYHPDKGGD-----EEKMKRLNSLYKKLQEGVKSA   69 (647)
T ss_pred             HHHHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCc-----HHHHHHHHHHHHHHhcHHHhh
Confidence            36899999999865  1388999999999999999999753     689999999999999988764

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.92  E-value=7.9e-10  Score=105.68  Aligned_cols=63  Identities=27%  Similarity=0.539  Sum_probs=56.7

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----ChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG----NKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~----~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      -|+|+||||+.++    +..+||++||+|++++||||.+.    .+...+++++.|++||..|+|...|.+
T Consensus        98 fDPyEILGI~~~t----s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren  164 (610)
T COG5407          98 FDPYEILGIDQDT----SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN  164 (610)
T ss_pred             CChHHhhcccCCC----cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            4899999999999    99999999999999999999754    355689999999999999999988753

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.86  E-value=5e-09  Score=88.01  Aligned_cols=51  Identities=14%  Similarity=0.279  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          189 PYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       189 ~~t~~eIKkAYRklakk~HPDk~~~~----~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .++..+|+++|++|++++|||+....    ...+...|..||+||++|+||.+|+
T Consensus         2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra   56 (157)
T TIGR00714         2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA   56 (157)
T ss_pred             CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence            45889999999999999999996432    2347789999999999999999886

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=4.2e-08  Score=101.36  Aligned_cols=63  Identities=24%  Similarity=0.416  Sum_probs=52.8

Q ss_pred             CCCCCccccchhcccCCCCCCCCCH-HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCh
Q 026279          168 SESYSLSHHYSVLGLDRLRKAPYTE-AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE  235 (241)
Q Consensus       168 ~~~~~~~d~Y~ILGl~~~a~~~~t~-~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp  235 (241)
                      +.+++..++|+||.|+-+. .+.++ +.||++|++||.+||||||+.    ..++|..||+||+.|...
T Consensus      1275 P~~mS~d~A~eiL~i~l~n-~~hD~~~KirrqY~kLA~kYHPDKNPE----GRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTN-EEHDKPAKIRRQYYKLAAKYHPDKNPE----GREMFERVNKAYELLSSE 1338 (2235)
T ss_pred             CCccchHHHHHHhccccCC-CCcccHHHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHHHHHHHH
Confidence            4456677999999998763 33344 899999999999999999997    589999999999999844

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=7e-07  Score=81.21  Aligned_cols=68  Identities=25%  Similarity=0.479  Sum_probs=55.2

Q ss_pred             CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~--~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+...|+|.+|||+.-. ...+..+|.+++++.+.+||||+..  ++. ...+.|+.|+.||+||+|+..|.
T Consensus        39 ~Wk~~DlYa~lgLskyR-~ka~~~qi~kah~kkv~kyHPDk~aa~g~~-~~d~fFk~iqkA~evL~D~~~R~  108 (379)
T COG5269          39 NWKKVDLYALLGLSKYR-TKAIPPQILKAHKKKVYKYHPDKTAAGGNK-GCDEFFKLIQKAREVLGDRKLRL  108 (379)
T ss_pred             hhhhhhHHHHhchHhhh-cCCCcHHHHHHHHHHHHHhCccchhccCCC-CcHHHHHHHHHHHHHhccHHHHh
Confidence            45557999999999653 2337788999999999999999962  222 26889999999999999999885

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=1.5e-06  Score=77.59  Aligned_cols=56  Identities=21%  Similarity=0.501  Sum_probs=49.6

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH-HhcC
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE-AIKQ  234 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYe-vL~d  234 (241)
                      ...+|.||||..++    +.++++.+|.+|++++|||......  ..+.|..|.+||. ||+.
T Consensus        46 ~~e~fril~v~e~~----~adevr~af~~lakq~hpdsgs~~a--daa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   46 IMECFRILGVEEGA----DADEVREAFHDLAKQVHPDSGSEEA--DAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHHhcccccC----chhHHHHHHHHHHHHcCCCCCCccc--cHHHHHHHHHHHHHHHHH
Confidence            46899999999999    9999999999999999999987643  5789999999998 6653

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=2e-05  Score=62.41  Aligned_cols=56  Identities=18%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCh
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE  235 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp  235 (241)
                      ++..++--||||.++.    +.+.||.++|++....|||+.++.-     .-.+||+|+++|...
T Consensus        53 Msr~EA~lIL~v~~s~----~k~KikeaHrriM~~NHPD~GGSPY-----lAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   53 MSRREAALILGVTPSL----DKDKIKEAHRRIMLANHPDRGGSPY-----LASKINEAKDLLEGT  108 (112)
T ss_pred             cchHHHHHHhCCCccc----cHHHHHHHHHHHHHcCCCcCCCCHH-----HHHHHHHHHHHHhcc
Confidence            4456788999999988    9999999999999999999998742     223599999999753

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00014  Score=61.36  Aligned_cols=66  Identities=20%  Similarity=0.401  Sum_probs=54.1

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ----GNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~----~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+||.+||.....  .+++.-+.-.|....+++|||+..    ++..-|.+...+||+||.+|+||-.|+
T Consensus         6 ~~~~ff~~Fg~e~~~--~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA   75 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSF--KIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA   75 (168)
T ss_pred             hHHHHHHHhccccCC--CCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence            346899999988754  557777887999999999999942    233457888999999999999999886

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00067  Score=57.68  Aligned_cols=55  Identities=33%  Similarity=0.500  Sum_probs=47.7

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCC--CC----hHHHHHHHHHHHHHHHHh
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQ--GN----KEAAEAKFKEVMVSYEAI  232 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~--~~----~~~a~ekF~~I~~AYevL  232 (241)
                      .+.|.+||+....    +..+|+++|+.+..++|||+-.  +.    -+.+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~----~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKA----DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhh----hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999    9999999999999999999842  21    345889999999999865

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=95.95  E-value=0.011  Score=57.68  Aligned_cols=44  Identities=30%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCC------hHHHHHHHHHHHHHHHHhc
Q 026279          190 YTEAEIKTAFRAKAKEFHPDQNQGN------KEAAEAKFKEVMVSYEAIK  233 (241)
Q Consensus       190 ~t~~eIKkAYRklakk~HPDk~~~~------~~~a~ekF~~I~~AYevL~  233 (241)
                      +|.+.||++||+.++..||||.+..      +-.|++.|-.+.+|+....
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~  449 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFN  449 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhh
Confidence            4899999999999999999997543      1235666666777766543

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.0052  Score=52.24  Aligned_cols=62  Identities=23%  Similarity=0.341  Sum_probs=47.7

Q ss_pred             cchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279          176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       176 ~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ++.++|+++.+  .+..+.++..|+.+.+.+|||+......    .+.+.+..++.||.+|++|-.|+
T Consensus         3 ~~~~~~~~~~f--~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra   68 (174)
T COG1076           3 GFVLFGLPRAF--QIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRA   68 (174)
T ss_pred             cccccccHHHH--HHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            44566666644  3466778999999999999999754322    25678999999999999998875

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=95.42  E-value=0.028  Score=45.95  Aligned_cols=57  Identities=18%  Similarity=0.230  Sum_probs=38.7

Q ss_pred             CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcCh
Q 026279          170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE  235 (241)
Q Consensus       170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp  235 (241)
                      .+++.+++.||+|++..    +.++|.+.|..|-...+|+++++.     -.=.+|..|.+.|..+
T Consensus        54 ~Mtl~EA~~ILnv~~~~----~~eeI~k~y~~Lf~~Nd~~kGGSf-----YLQSKV~rAKErl~~E  110 (127)
T PF03656_consen   54 GMTLDEARQILNVKEEL----SREEIQKRYKHLFKANDPSKGGSF-----YLQSKVFRAKERLEQE  110 (127)
T ss_dssp             ---HHHHHHHHT--G------SHHHHHHHHHHHHHHT-CCCTS-H-----HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCcc----CHHHHHHHHHHHHhccCCCcCCCH-----HHHHHHHHHHHHHHHH
Confidence            57778999999999977    999999999999999999988752     2233466676666543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=92.73  E-value=0.26  Score=34.72  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=26.8

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHH
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAK  204 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklak  204 (241)
                      ++..++|++|||+++.    +.+.|-.+|.....
T Consensus         2 ~~~~~Ay~~Lgi~~~~----~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDT----DDDFIISAFQSKVN   31 (62)
T ss_pred             CCHHHHHHHhCcCCCC----CHHHHHHHHHHHHH
Confidence            3557899999999988    99999999999888

>PF09333 ATG_C: ATG C terminal domain; InterPro: IPR015412 Eukaryotes have developed an evolutionarily conserved process, termed autophagy, to survive starvation conditions

Probab=80.38  E-value=2.1  Score=33.14  Aligned_cols=36  Identities=14%  Similarity=-0.067  Sum_probs=31.4

Q ss_pred             cchhHHHHHHHHHHHHHhhhHhhhh--HHHHHHHHHHh
Q 026279           24 KADVKLWGVFLFGLIGATATTFAVG--QLRKTVDWVYS   59 (241)
Q Consensus        24 ~g~~k~~g~~~~~~i~~~~~~~~v~--q~~r~~~~~~~   59 (241)
                      .|+++|++-+|+++|.-|++++.=+  ++..||.|.+.
T Consensus        49 ~g~~~gv~kgvp~~vvkP~iG~~ea~s~~l~Gi~N~l~   86 (98)
T PF09333_consen   49 KGFVKGVGKGVPGAVVKPMIGATEAVSKTLQGIRNQLD   86 (98)
T ss_pred             HHHHHHHHHhchHHHHhhHHHHHHHHHHHHHHHHhcCC
Confidence            5899999999999999999998766  99999998544

The vacuole or lysosome mediates the turnover and recycling of non-essential intracellular material for re-use in critical biosynthetic reactions. ATG2 (also known as Apg2) is required for the formation and/or completion of cytosolic sequestering vesicles that are needed for vacuolar import through both the Cvt pathway and autophagy, as well as for the specific degradation of peroxisomes. Apg2 is a peripheral membrane protein that localises to the previously identified perivacuolar compartment that contains Apg9 []. This entry represents the C-terminal domain of Apg2 and related proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-05
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		2e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		2e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-05
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-04
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		4e-04

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + K
Sbjct: 18  DIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +K
Sbjct: 17  EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +K
Sbjct: 17  EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 192 EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +K
Sbjct: 17  EREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQK 61

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 194 EIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           +IK A+R  A  +HPD+N  NKE AE KFK V  +YE +   +K
Sbjct: 25  DIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKK 68

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 182 LDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           LD  R+A  +EA IK A+R  A ++HPD+N  NKE AE +FK+V  +YE +   +K
Sbjct: 15  LDVPRQAS-SEA-IKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKK 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-14
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	6e-14
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	7e-14
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	9e-14
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	1e-13
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-12
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-12
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-12
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	4e-12
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-11
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-10
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-10
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	4e-10
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	5e-10
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	5e-10
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	9e-10
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	1e-09
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-09
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-09
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	2e-09
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-09
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	9e-09
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	4e-08
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	8e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	1e-04
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	1e-04
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-04
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-04

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 65.3 bits (160), Expect = 4e-14
 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+ +       E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   +
Sbjct: 6   YEILGVSK----TAEEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQ 60

Query: 237 K 237
           K
Sbjct: 61  K 61

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 19/102 (18%)

Query: 137 YHHHFQRDDWYWKADPSYRQQRT-NFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEI 195
           +HHH          +  Y Q      +              Y++LG+            I
Sbjct: 2   HHHHHHSSGVDLGTENLYFQSNAMELKDY------------YAILGVQP--TD--DLKTI 45

Query: 196 KTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERK 237
           KTA+R  A+++HPD ++ N   AEAKFK++  ++E +K E++
Sbjct: 46  KTAYRRLARKYHPDVSKEND--AEAKFKDLAEAWEVLKDEQR 85

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 64.7 bits (158), Expect = 7e-14
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 4/61 (6%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +L + R   A  +  +IK A+R KA ++HPD+N  NKE AE KFKEV  +YE +  + 
Sbjct: 5   YEILDVPR--SA--SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKH 60

Query: 237 K 237
           K
Sbjct: 61  K 61

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 63.8 bits (156), Expect = 9e-14
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VL + R  +A  +   IK A+R  A ++HPD+N  NKE AE +FK+V  +YE +   +
Sbjct: 12  YEVLDVPR--QA--SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAK 67

Query: 237 K 237
           K
Sbjct: 68  K 68

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLG+     A  +  +IK A+R  A  +HPD+N  NKE AE KFK V  +YE +   +
Sbjct: 12  YEVLGVQA--SA--SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSK 67

Query: 237 K 237
           K
Sbjct: 68  K 68

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           YS+LG+ +   A  +  EI+ AF+  A + HPD+N  N   A   F ++  +YE +K E 
Sbjct: 5   YSLLGVSK--TA--SSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDED 59

Query: 237 K 237
            
Sbjct: 60  L 60

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 162 RQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAK 221
               +   SYS +  Y +LG+        T+A+IK A+  +   +HPD+N G+ E A  +
Sbjct: 5   SSGSQGDCSYSRTALYDLLGVPS----TATQAQIKAAYYRQCFLYHPDRNSGSAE-AAER 59

Query: 222 FKEVMVSYEAIKQERK 237
           F  +  +Y  +     
Sbjct: 60  FTRISQAYVVLGSATL 75

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+ R      ++ EIK A+   AK++HPD N+ + + A+ KF ++  +YE +  E 
Sbjct: 10  YQILGVPR----NASQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEV 64

Query: 237 K 237
           K
Sbjct: 65  K 65

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y++LG D L     +  +I   F+ +A E HPD++  N + A   F+++  + E +  E 
Sbjct: 23  YTLLGCDELS----SVEQILAEFKVRALECHPDKHPENPK-AVETFQKLQKAKEILTNEE 77

Query: 237 K 237
            
Sbjct: 78  S 78

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLGLD+      T  +IK ++R  A ++HPD+N  N E A  KFKE+  ++  +    
Sbjct: 20  YHVLGLDK----NATSDDIKKSYRKLALKYHPDKNPDNPE-AADKFKEINNAHAILTDAT 74

Query: 237 K 237
           K
Sbjct: 75  K 75

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE--AAEAKFKEVMVSYEAIKQ 234
           Y VL ++R     + + ++  A+RA A++ HPD+ +  +E   AE +F+ +  +YE +K 
Sbjct: 18  YDVLEVNR---EEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74

Query: 235 ERK 237
           +  
Sbjct: 75  DEA 77

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYE 230
            YS+LG D    A    +++K  ++     +HPD+   +      E    KF E+  +++
Sbjct: 12  WYSILGADP--SA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWK 67

Query: 231 AIKQERK 237
            +  E  
Sbjct: 68  ILGNEET 74

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 6/61 (9%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+ +      +E +IK AF   A ++HPD+N+     AEAKF+E+  +YE +    
Sbjct: 10  YDILGVPK----SASERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDAN 63

Query: 237 K 237
           +
Sbjct: 64  R 64

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 53.3 bits (129), Expect = 5e-10
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y  LGL R   A  ++ EIK A+R +A  +HPD+N+  +  AE KFKE+  +Y+ +   R
Sbjct: 6   YQTLGLAR--GA--SDEEIKRAYRRQALRYHPDKNK--EPGAEEKFKEIAEAYDVLSDPR 59

Query: 237 K 237
           K
Sbjct: 60  K 60

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 9/66 (13%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEA 231
           YS+LG D    A    +++K  ++     +HPD+   +      E    KF E+  +++ 
Sbjct: 19  YSILGADP--SA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKI 74

Query: 232 IKQERK 237
           +  E  
Sbjct: 75  LGNEET 80

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 52.6 bits (127), Expect = 9e-10
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+ R      ++ ++K A+R  A +FHPD+N      A   FK +  +Y  +    
Sbjct: 10  YEILGVSR----GASDEDLKKAYRRLALKFHPDKNHAPG--ATEAFKAIGTAYAVLSNPE 63

Query: 237 K 237
           K
Sbjct: 64  K 64

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y +LG+         E E+K  +R  A ++HPD+  G+ E    KFKE+  ++E +   +
Sbjct: 11  YDLLGVSP----SANEQELKKGYRKAALKYHPDKPTGDTE----KFKEISEAFEILNDPQ 62

Query: 237 K 237
           K
Sbjct: 63  K 63

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYE 230
              SV+           E+E K   R    ++HPD+N  N + A   FK +     
Sbjct: 17  EVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEIN 68

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           YS+LG+ +      +  EI+ AF+  A + HPD+N  N   A   F ++  +YE +K E 
Sbjct: 24  YSLLGVSK----TASSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDED 78

Query: 237 K 237
            
Sbjct: 79  L 79

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
              +LGL+R   A      ++ A+  K KEFHPD+        E K K++   Y+ ++  
Sbjct: 13  LMDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKG-----GDEEKMKKMNTLYKKMEDG 65

Query: 236 RK 237
            K
Sbjct: 66  VK 67

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 6/61 (9%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLG+ R      ++A+IK A++  A+E+HPD+N+     AE +F ++  +YE +  E 
Sbjct: 20  YRVLGVSR----TASQADIKKAYKKLAREWHPDKNK--DPGAEDRFIQISKAYEILSNEE 73

Query: 237 K 237
           K
Sbjct: 74  K 74

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 51.0 bits (122), Expect = 9e-09
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
             +LGL+R   A      ++ A+  K KEFHPD+        E K K++   Y+ ++   
Sbjct: 11  MDLLGLER--SAWGNIPLMRKAYLKKCKEFHPDKG-----GDEEKMKKMNTLYKKMEDGV 63

Query: 237 K 237
           K
Sbjct: 64  K 64

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
            + +LG+        +  E+  A+R  A   HPD+       +E  FK V+ +  A+ + 
Sbjct: 29  SWDMLGVKP----GASRDEVNKAYRKLAVLLHPDKCV--APGSEDAFKAVVNARTALLKN 82

Query: 236 RKDMNS 241
            K   S
Sbjct: 83  IKSGPS 88

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 47.2 bits (113), Expect = 8e-08
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 8/61 (13%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
           Y VLG+        ++ E+K A+R  A +FHPD+N         +FK++  +YE +  E+
Sbjct: 11  YDVLGVKP----DASDNELKKAYRKMALKFHPDKNPD----GAEQFKQISQAYEVLSDEK 62

Query: 237 K 237
           K
Sbjct: 63  K 63

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 149 KADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHP 208
           + + + +Q R    +  R  +      +Y +LG+ R       + EI  A+R  A ++HP
Sbjct: 357 EHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN----AKKQEIIKAYRKLALQWHP 412

Query: 209 D--QNQGNKEAAEAKFKEVMVSYE 230
           D  QN+  K+ AE KF ++  + E
Sbjct: 413 DNFQNEEEKKKAEKKFIDIAAAKE 436

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
             +L L R  +       ++ A++ ++   HPD     K  + A  +E+   +   K E 
Sbjct: 14  LELLKLPR--QLWGDFGRMQQAYKQQSLLLHPD-----KGGSHALMQELNSLWGTFKTEV 66

Query: 237 KDMNS 241
            ++  
Sbjct: 67  YNLRM 71

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 22/123 (17%)

Query: 93  REEYEE---EMERVERIRRMQSVF-NRERNKYKKSYESWRQNDYDNGTYHHHFQRDDWYW 148
           +EE +      + V    R+     +++    +K  E   + +Y             +  
Sbjct: 48  KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK------------FLM 95

Query: 149 KADPSYRQQRTNFRQPPRESESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHP 208
                    +T  RQP   +  Y               K   +  +     R    E  P
Sbjct: 96  SP------IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 209 DQN 211
            +N
Sbjct: 150 AKN 152

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 191 TEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQE 235
           T  ++K  +R      HP +  G   ++ A+  F E+  ++   + +
Sbjct: 46  TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFENQ 92

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 8/66 (12%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEA 231
           ++++ GL    +       +   F+   +++HPD+        + AA  +   +  +++ 
Sbjct: 3   YFTLFGLPA--RYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 232 IKQERK 237
           ++    
Sbjct: 61  LRHPLM 66

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 191 TEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERK 237
           T  ++K  +R      HPD+  G   ++ A+  F E+  ++   + + +
Sbjct: 130 TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.76
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.74
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.74
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.73
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.73
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.72
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.72
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.71
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.71
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.71
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.71
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.71
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.7
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.7
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.69
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.68
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.66
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.66
2guz_A	71	Mitochondrial import inner membrane translocase su	99.64
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.63
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.62
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.61
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.6
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.6
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.58
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.57
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.56
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.55
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.53
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.53
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.48
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.46
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.36
2guz_B	65	Mitochondrial import inner membrane translocase su	98.98
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.81

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=128.88  Aligned_cols=64  Identities=38%  Similarity=0.606  Sum_probs=59.6

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+||+||||++++    |.++||++|++|++++|||+++...+.+.++|++|++||++|+||.+|.
T Consensus         7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQA----SSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD   70 (82)
T ss_dssp             SSCCHHHHTTCCTTC----CHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred             CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            347999999999999    9999999999999999999998876678999999999999999999885

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=3.5e-18  Score=131.29  Aligned_cols=65  Identities=31%  Similarity=0.527  Sum_probs=59.1

Q ss_pred             CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+...+||+||||++++    +.++||++||+|+++||||+++++.. +.++|++|++||++|+||.+|.
T Consensus        13 ~~~~~~~Y~vLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~   77 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTA----TQAQIKAAYYRQCFLYHPDRNSGSAE-AAERFTRISQAYVVLGSATLRR   77 (99)
T ss_dssp             SSCSSHHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCSSCSH-HHHHHHHHHHHHHHTTSHHHHH
T ss_pred             CCCccCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence            44557999999999999    99999999999999999999986544 7899999999999999999885

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=2e-18  Score=130.64  Aligned_cols=64  Identities=39%  Similarity=0.630  Sum_probs=59.4

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+.+||+||||++++    +.++||++|++|+++||||+++...+.++++|++|++||++|+||.+|.
T Consensus         7 ~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~   70 (92)
T 2dmx_A            7 GMANYYEVLGVQASA----SPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS   70 (92)
T ss_dssp             CCCCHHHHHTCCTTC----CTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCcCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            457999999999999    9999999999999999999998776678999999999999999999885

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=3.2e-18  Score=125.85  Aligned_cols=62  Identities=34%  Similarity=0.593  Sum_probs=57.1

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+||+||||++++    |.++||++|++|++++|||++++.+. +.++|++|++||++|+||.+|.
T Consensus         6 ~~~~y~iLgv~~~a----~~~~Ik~ayr~l~~~~HPD~~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~   67 (79)
T 2dn9_A            6 SGDYYQILGVPRNA----SQKEIKKAYYQLAKKYHPDTNKDDPK-AKEKFSQLAEAYEVLSDEVKRK   67 (79)
T ss_dssp             CSCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCSSCTT-HHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence            36899999999999    99999999999999999999986543 7899999999999999999885

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=3.9e-18  Score=129.11  Aligned_cols=63  Identities=25%  Similarity=0.359  Sum_probs=57.3

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcCC
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMNS  241 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~~  241 (241)
                      ..+||+||||++++    |.++||++||+|+++||||++++.  .+.++|++|++||++|+||.+|..+
T Consensus        26 ~~~~y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~~~   88 (90)
T 2ys8_A           26 SKDSWDMLGVKPGA----SRDEVNKAYRKLAVLLHPDKCVAP--GSEDAFKAVVNARTALLKNIKSGPS   88 (90)
T ss_dssp             CSSHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTTCCCT--THHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred             CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCcccccCC
Confidence            36999999999999    999999999999999999999763  2788999999999999999998753

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=4.7e-18  Score=131.08  Aligned_cols=63  Identities=41%  Similarity=0.665  Sum_probs=58.8

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +.+||+||||++++    |.++||++|++|++++|||+++...+.+.+.|++|++||++|+||.+|.
T Consensus         1 M~d~Y~iLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~   63 (99)
T 2lgw_A            1 MASYYEILDVPRSA----SADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE   63 (99)
T ss_dssp             CCCHHHHSSSCTTS----CHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            36899999999999    9999999999999999999998876678999999999999999999884

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.72  E-value=4.7e-18  Score=128.79  Aligned_cols=66  Identities=23%  Similarity=0.241  Sum_probs=59.6

Q ss_pred             CCCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279          169 ESYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  238 (241)
Q Consensus       169 ~~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR  238 (241)
                      ......++|+||||++++    |.++||+|||+|+++||||+++++.+.++++|++|++||++|+|...|
T Consensus        11 ~~~~~~~~y~vLgv~~~a----s~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           11 RGSILKEVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             SSSCHHHHHHHHHHTTSS----CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCccHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            345568999999999999    999999999999999999999988777899999999999999997643

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1e-17  Score=122.98  Aligned_cols=61  Identities=30%  Similarity=0.559  Sum_probs=56.5

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+||+||||++++    +.++||++|++|++++|||+++.  +.+.++|++|++||++|+||.+|.
T Consensus         6 ~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~~~~~f~~i~~Ay~~L~d~~~R~   66 (78)
T 2ctp_A            6 SGDYYEILGVSRGA----SDEDLKKAYRRLALKFHPDKNHA--PGATEAFKAIGTAYAVLSNPEKRK   66 (78)
T ss_dssp             SCCHHHHHTCCTTC----CHHHHHHHHHHHHTTSCTTTCSS--HHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC--ccHHHHHHHHHHHHHHHCCHHHHH
Confidence            46999999999999    99999999999999999999976  347899999999999999999885

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.71  E-value=9.9e-18  Score=126.89  Aligned_cols=65  Identities=22%  Similarity=0.381  Sum_probs=58.5

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~-----~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +...+||+||||++++    +.++||++||+|+++||||+++..     .+.+.++|++|++||++|+||.+|.
T Consensus        13 ~~~~~~y~iLgv~~~a----s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~   82 (94)
T 1wjz_A           13 TLKKDWYSILGADPSA----NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SSCSCHHHHTTCCTTC----CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             CCCCChHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            4567999999999999    999999999999999999998742     2458899999999999999999885

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.3e-17  Score=125.39  Aligned_cols=61  Identities=34%  Similarity=0.632  Sum_probs=56.5

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+||+||||++++    |.++||++||+|++++|||+++.  +.+.++|++|++||++|+||.+|.
T Consensus         6 ~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~--~~a~~~f~~i~~Ay~~L~d~~~R~   66 (88)
T 2ctr_A            6 SGSYYDILGVPKSA----SERQIKKAFHKLAMKYHPDKNKS--PDAEAKFREIAEAYETLSDANRRK   66 (88)
T ss_dssp             CCSHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCCS--HHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred             CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCC--hHHHHHHHHHHHHHHHHCCHHHHH
Confidence            46999999999999    99999999999999999999985  348999999999999999999885

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.71  E-value=1e-17  Score=121.70  Aligned_cols=61  Identities=33%  Similarity=0.590  Sum_probs=55.4

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ....+||+||||++++    |.++||++|++|++++|||++++.    .+.|+.|++||++|+||.+|.
T Consensus         5 ~~~~~~y~iLgl~~~a----~~~eIk~ayr~l~~~~HPD~~~~~----~~~f~~i~~Ay~~L~d~~~R~   65 (73)
T 2och_A            5 VKETGYYDVLGVKPDA----SDNELKKAYRKMALKFHPDKNPDG----AEQFKQISQAYEVLSDEKKRQ   65 (73)
T ss_dssp             -CCCCHHHHHTCCTTC----CHHHHHHHHHHHHHHTCTTTCTTC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred             cCCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCcCH----HHHHHHHHHHHHHHCCHHHHH
Confidence            3457999999999999    999999999999999999999863    579999999999999999885

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=2.5e-17  Score=128.80  Aligned_cols=63  Identities=38%  Similarity=0.547  Sum_probs=58.1

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...++|+||||++++    |.++||++|++|++++|||+++++++ +.++|++|++||++|+||.+|.
T Consensus        15 ~~~~~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~   77 (109)
T 2ctw_A           15 SGESLYHVLGLDKNA----TSDDIKKSYRKLALKYHPDKNPDNPE-AADKFKEINNAHAILTDATKRN   77 (109)
T ss_dssp             CSCCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTSTTCHH-HHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHHcCHHHHH
Confidence            346999999999999    99999999999999999999987654 8999999999999999999885

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.70  E-value=1.5e-17  Score=121.87  Aligned_cols=60  Identities=40%  Similarity=0.678  Sum_probs=55.5

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+||+||||++++    |.++||++|++|++++|||++++.  .+.+.|+.|++||++|+||.+|.
T Consensus         3 ~~~y~iLgv~~~a----s~~~Ik~ayr~l~~~~HPD~~~~~--~~~~~f~~i~~Ay~~L~d~~~R~   62 (77)
T 1hdj_A            3 KDYYQTLGLARGA----SDEEIKRAYRRQALRYHPDKNKEP--GAEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CCSHHHHTCCTTC----CHHHHHHHHHHHHHTTCTTTCCCT--THHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCc--cHHHHHHHHHHHHHHHCCHHHHH
Confidence            5899999999999    999999999999999999999763  27899999999999999999885

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.2e-17  Score=131.00  Aligned_cols=63  Identities=27%  Similarity=0.469  Sum_probs=57.9

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+||+||||++++    +.++||++||+|+++||||+++++.. +.++|++|++||++|+||.+|.
T Consensus        18 ~~~d~Y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~vL~d~~~R~   80 (112)
T 2ctq_A           18 DTEDYYTLLGCDELS----SVEQILAEFKVRALECHPDKHPENPK-AVETFQKLQKAKEILTNEESRA   80 (112)
T ss_dssp             CCCCHHHHTTCCTTS----CHHHHHHHHHHHHHTTCTTTCTTCST-HHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence            347999999999999    99999999999999999999986543 8999999999999999999885

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.69  E-value=3.3e-17  Score=123.22  Aligned_cols=61  Identities=36%  Similarity=0.635  Sum_probs=56.3

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+||+||||++++    |.++||++||+|++++|||++++.  .+.++|++|++||++|+||.+|.
T Consensus        16 ~~d~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~--~~~~~f~~i~~Ay~~L~d~~~R~   76 (88)
T 2cug_A           16 DFDPYRVLGVSRTA----SQADIKKAYKKLAREWHPDKNKDP--GAEDRFIQISKAYEILSNEEKRT   76 (88)
T ss_dssp             SSCHHHHHTCCTTC----CHHHHHHHHHHHHHHSCTTTCCST--THHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCh--hHHHHHHHHHHHHHHHCCHHHHH
Confidence            46999999999999    999999999999999999999863  37899999999999999999885

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.8e-17  Score=124.71  Aligned_cols=61  Identities=30%  Similarity=0.576  Sum_probs=55.7

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ....+||+||||++++    |.++||++|++|++++|||+++.+    .++|++|++||++|+||.+|.
T Consensus         5 ~~~~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~----~~~f~~i~~Ay~~L~d~~~R~   65 (92)
T 2o37_A            5 VKETKLYDLLGVSPSA----NEQELKKGYRKAALKYHPDKPTGD----TEKFKEISEAFEILNDPQKRE   65 (92)
T ss_dssp             CSCCHHHHHHTCCTTC----CHHHHHHHHHHHHHHHCTTSTTCC----HHHHHHHHHHHHHHTSHHHHH
T ss_pred             ccCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCh----HHHHHHHHHHHHHHCCHHHHH
Confidence            3457999999999999    999999999999999999999864    569999999999999999885

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.66  E-value=1.8e-17  Score=128.09  Aligned_cols=61  Identities=43%  Similarity=0.758  Sum_probs=56.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+||+||||++++    |.++||++||+|++++|||+++.... ++++|++|++||++|+||.+|.
T Consensus         3 ~~~y~iLgv~~~a----s~~eIk~ayr~l~~~~HPDk~~~~~~-a~~~f~~i~~Ay~~L~d~~~R~   63 (103)
T 1bq0_A            3 QDYYEILGVSKTA----EEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQKRA   63 (103)
T ss_dssp             CCSTTTTSSCSSC----CHHHHHHHHHHHHTTTCTTTCTTTCT-HHHHHHHHTTTTTSTTCSHHHH
T ss_pred             CCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCcCCCCCcHH-HHHHHHHHHHHHHHHCCHHHHH
Confidence            5899999999999    99999999999999999999986443 7899999999999999999885

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.66  E-value=4.5e-17  Score=120.73  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             ccccchhcccCCC--CCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          173 LSHHYSVLGLDRL--RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       173 ~~d~Y~ILGl~~~--a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      ..++|+||||+++  +    |.++||++||+|++++|||++++     .++|++|++||++|+|+.+|..
T Consensus        10 ~~~~y~iLgl~~~~~a----~~~eIk~aYr~la~~~HPDk~~~-----~~~f~~i~~AYe~L~~~~~r~~   70 (79)
T 1faf_A           10 KERLLELLKLPRQLWG----DFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHHTCCSSSTT----CHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCCC----CHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHHhhHHHHHH
Confidence            3689999999999  8    99999999999999999999865     6899999999999999988764

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.4e-16  Score=115.71  Aligned_cols=60  Identities=13%  Similarity=0.164  Sum_probs=53.3

Q ss_pred             CCCccccchhcccCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279          170 SYSLSHHYSVLGLDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  238 (241)
Q Consensus       170 ~~~~~d~Y~ILGl~~-~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR  238 (241)
                      .++..++|+||||++ ++    |.++||++||+|++++|||++++     .++|++|++||++|+++..|
T Consensus        10 ~m~~~~~y~iLgl~~~~a----~~~eIk~ayr~l~~~~HPDk~g~-----~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           10 KMNSKEALQILNLTENTL----TKKKLKEVHRKIMLANHPDKGGS-----PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             SCCHHHHHHHTTCCTTTC----CHHHHHHHHHHHHHHHCGGGTCC-----HHHHHHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHcCCCCCCC----CHHHHHHHHHHHHHHHCCCCCCC-----HHHHHHHHHHHHHHhhhhhc
Confidence            345679999999998 68    99999999999999999999754     56999999999999998655

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=2.8e-16  Score=129.30  Aligned_cols=64  Identities=22%  Similarity=0.399  Sum_probs=57.6

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh-----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK-----EAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~-----~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+||+||||++++    +.++||++||+|++++|||+++...     +.+.++|+.|++||++|+||.+|.
T Consensus         8 ~~~~~y~iLgv~~~a----~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~   76 (155)
T 2l6l_A            8 PKKDWYSILGADPSA----NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR   76 (155)
T ss_dssp             CCSHHHHHHTCCTTC----CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred             CCCChhHhcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            447999999999999    9999999999999999999987542     347899999999999999999985

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.62  E-value=2.4e-16  Score=133.05  Aligned_cols=61  Identities=33%  Similarity=0.585  Sum_probs=56.8

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+|||+|++++|||+++++.+ +.++|+.|++||++|+||.+|.
T Consensus         2 ~~~y~~l~~~~~a----~~~~ik~ay~~l~~~~HPD~~~~~~~-~~~~f~~i~~Ay~~L~~~~~r~   62 (210)
T 3apq_A            2 QNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLRK   62 (210)
T ss_dssp             CCHHHHHTCCTTC----CHHHHHHHHHHHHHHHCGGGCTTCTT-HHHHHHHHHHHHHHHTSHHHHH
T ss_pred             CCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCChH-HHHHHHHHHHHHHHhCCHHHHH
Confidence            6899999999999    99999999999999999999976554 7899999999999999999885

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.61  E-value=3.9e-16  Score=121.54  Aligned_cols=65  Identities=29%  Similarity=0.592  Sum_probs=57.4

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--ChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG--NKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~--~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ...+||+||||++++   +|.++||++||+|++++|||++++  ..+.+.++|++|++||++|+||.+|.
T Consensus        13 ~~~~~y~iLgv~~~a---~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~   79 (109)
T 2qsa_A           13 GLENCYDVLEVNREE---FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT   79 (109)
T ss_dssp             TTSCHHHHTTCCGGG---CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHcCCCCCC---CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            347999999999875   499999999999999999999975  23458999999999999999999885

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.60  E-value=1.1e-16  Score=126.73  Aligned_cols=58  Identities=29%  Similarity=0.462  Sum_probs=54.0

Q ss_pred             cccchhcccCCCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTE--AEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~--~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .++|+||||++++    +.  ++||+|||+|++++|||++++     .++|++|++||+||+||.+|..
T Consensus         8 ~~~Y~iLgv~~~a----s~~~~eIk~aYr~la~~~HPDk~~~-----~e~f~~I~~AYevL~d~~~R~~   67 (114)
T 1gh6_A            8 LQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH   67 (114)
T ss_dssp             HHHHHHTTCCTTS----CSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSCC
T ss_pred             hhHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCCCCCcc-----HHHHHHHHHHHHHHCCHHHHHH
Confidence            6899999999998    77  999999999999999999886     5799999999999999999874

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.60  E-value=2.1e-16  Score=120.91  Aligned_cols=57  Identities=19%  Similarity=0.374  Sum_probs=51.7

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQ  234 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~d  234 (241)
                      .++|++|||++.+    |.++||+|||+++++||||+++++.  ..|+++|++|++||++|++
T Consensus        33 ~~~y~~Lgv~~~a----s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSS----SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            4789999999999    9999999999999999999998653  3488999999999999975

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.57  E-value=1.1e-15  Score=130.10  Aligned_cols=63  Identities=19%  Similarity=0.366  Sum_probs=57.1

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .++|+||||++.+    |.++||+|||+|++++|||++++..  ..|+++|++|++||++|+||.+|..
T Consensus       117 ~d~Y~vLgv~~~A----s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~  181 (182)
T 1n4c_A          117 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL  181 (182)
T ss_dssp             CCCCCCCCGGGGS----SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred             cchhhcCCCCCCC----CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhh
Confidence            5899999999999    9999999999999999999987543  2378999999999999999999863

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.56  E-value=2.3e-15  Score=126.53  Aligned_cols=63  Identities=13%  Similarity=0.310  Sum_probs=56.2

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChH----HHHHHHHHHHHHHHHhcChhhhc
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKE----AAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~----~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +||+||||++++  .+|..+||++||+|+++||||++++..+    .|.++|+.|++||++|+||.+|.
T Consensus         2 d~y~lLgl~~~a--~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~   68 (171)
T 1fpo_A            2 DYFTLFGLPARY--QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (171)
T ss_dssp             HHHHHTTCCSSS--CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CHHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            799999999876  5699999999999999999999876532    36789999999999999999985

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.55  E-value=7.2e-16  Score=120.48  Aligned_cols=58  Identities=19%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---C---hHHHHHHHHHHHHHHHHhcChh
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQG---N---KEAAEAKFKEVMVSYEAIKQER  236 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~---~---~~~a~ekF~~I~~AYevL~dp~  236 (241)
                      .+||+|||++. +    |.++||+|||+|+++|||||+++   +   ...|+++|++|++||++|+|+.
T Consensus        41 ~d~Y~vl~~~~-A----s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           41 SGWKPVPLMDM-I----EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             SCCCCCCGGGS-C----SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCHHHHcCCCC-C----CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            68999999996 8    99999999999999999999763   2   2247899999999999999985

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.53  E-value=6.8e-16  Score=141.79  Aligned_cols=65  Identities=35%  Similarity=0.629  Sum_probs=0.0

Q ss_pred             CCCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          170 SYSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       170 ~~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .+...|||+||||++++    |.++||+|||+|+++||||++++.  .|+++|++|++||++|+||.+|..
T Consensus        24 ~m~~~d~Y~vLgv~~~a----s~~eIk~aYr~la~~~HPDk~~~~--~a~~~f~~i~~Ay~vL~d~~~R~~   88 (329)
T 3lz8_A           24 AMELKDYYAILGVQPTD----DLKTIKTAYRRLARKYHPDVSKEN--DAEAKFKDLAEAWEVLKDEQRRAE   88 (329)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cccccCHHHHcCcCCCC----CHHHHHHHHHHHHHHHCCCCCCCh--HHHHHHHHHHHHHHHhhhhhhhcc
Confidence            34567999999999999    999999999999999999999863  489999999999999999999863

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.53  E-value=5.9e-15  Score=127.61  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             ccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh----HHHHHHHHHHHHHHHHhcChhhhc
Q 026279          173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK----EAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       173 ~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~----~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ..+||+||||++.+  .+|..+||++||+|++++|||++++..    ..|.++|+.|++||++|+||.+|.
T Consensus        42 ~~d~y~lLgv~~~~--~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~  110 (207)
T 3bvo_A           42 TRDYFSLMDCNRSF--RVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG  110 (207)
T ss_dssp             TCCHHHHTTSCSCS--CCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CCCHHHHcCCCCCC--CCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            36999999999863  239999999999999999999987642    346789999999999999999985

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.48  E-value=3.3e-15  Score=126.25  Aligned_cols=58  Identities=29%  Similarity=0.451  Sum_probs=50.8

Q ss_pred             cccchhcccCCCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYT--EAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t--~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .++|+||||++++    +  .++||+|||+|++++|||++++     .++|++|++||++|+||.+|..
T Consensus        11 ~d~Y~vLGl~~~a----s~~~~eIKkAYRkLa~~~HPDk~~~-----~e~F~~I~~AYevLsdp~kR~~   70 (174)
T 2pf4_E           11 LQLMDLLGLERSA----WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYAH   70 (174)
T ss_dssp             HHHHHTTTCCGGG----TTCHHHHHHHHHHHGGGCSCC---C-----CTTTTHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHcCCCCCC----CcCHHHHHHHHHHHHHHHCcCCCCC-----HHHHHHHHHHHHHhCCHHHHHH
Confidence            6899999999998    6  6999999999999999999876     4789999999999999999863

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.46  E-value=1.7e-14  Score=122.46  Aligned_cols=60  Identities=17%  Similarity=0.303  Sum_probs=53.7

Q ss_pred             Cccccchhc------ccCC-CCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          172 SLSHHYSVL------GLDR-LRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       172 ~~~d~Y~IL------Gl~~-~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .+.+||+||      |+++ ++    |..+||++||+|+++||||++++    +.++|+.|++||++|+||.+|.
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a----~~~eIk~aYr~la~~~HPDk~~~----a~~~f~~i~~AY~vL~dp~~R~   75 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTI----DQSRLRKEYRQLQAQHHPDMAQQ----GSEQSSTLNQAYHTLKDPLRRS   75 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCC----CHHHHHHHHHHHHHTCCTTSCCS----CSSGGGSHHHHHHHHHSHHHHH
T ss_pred             CCCCHHHHhccccccCCCCCCC----CHHHHHHHHHHHHHHhCcCCCcc----HHHHHHHHHHHHHHHcChHHHH
Confidence            357999999      4665 56    99999999999999999999987    5789999999999999999885

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.36  E-value=7.5e-14  Score=138.37  Aligned_cols=64  Identities=31%  Similarity=0.527  Sum_probs=35.0

Q ss_pred             CCccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          171 YSLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       171 ~~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      ....+||+||||++++    |.++||+|||+|+++||||+++++.+ +.++|++|++||++|+||.+|.
T Consensus        18 ~~~~~~y~~lg~~~~a----~~~~i~~ay~~l~~~~hpd~~~~~~~-~~~~f~~i~~ay~~L~~~~~r~   81 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTA----SSREIRQAFKKLALKLHPDKNPNNPN-AHGDFLKINRAYEVLKDEDLRK   81 (780)
T ss_dssp             -----CHHHHTCCTTC----CHHHHHHHHCC------------------------CTHHHHHHSHHHHH
T ss_pred             CCCCCHHHHcCCCCCC----CHHHHHHHHHHHHHHHCcCCCCCChH-HHHHHHHHHHHHHHHcChHHHH
Confidence            3446999999999999    99999999999999999999976543 8899999999999999999885

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.98  E-value=4.6e-10  Score=80.43  Aligned_cols=56  Identities=14%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             CccccchhcccCCC---CCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChh
Q 026279          172 SLSHHYSVLGLDRL---RKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER  236 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~---a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~  236 (241)
                      +..++|.||||+++   +    +.++|+++||+|....|||++++     .-...+|+.|+++|..+.
T Consensus         2 t~~EA~~ILgv~~~~~~a----~~~~Ik~~yr~Lm~~nhPDkGGS-----~yl~~ki~~Ake~l~~~~   60 (65)
T 2guz_B            2 TLDESCKILNIEESKGDL----NMDKINNRFNYLFEVNDKEKGGS-----FYLQSKVYRAAERLKWEL   60 (65)
T ss_dssp             CHHHHHHHTTCCGGGTCC----SHHHHHHHHHHHHHHTCGGGTCC-----HHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCCcCcC----CHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHHHHHH
Confidence            45689999999998   7    99999999999999999999865     566778999999997543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.81  E-value=3.1e-09  Score=94.60  Aligned_cols=62  Identities=29%  Similarity=0.480  Sum_probs=56.2

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCh--HHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNK--EAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~--~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .++|.+||+...+    +.++|+++|+++++++|||+.+.+.  +.+.++|+.|++||++|+||.+|.
T Consensus       382 ~~~y~~lg~~~~~----~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          382 RDYYKILGVKRNA----KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             CCSGGGSCSSTTC----CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             hhHHHHhCCCccC----CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            3899999999998    9999999999999999999998653  568999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	6e-06
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-05
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	8e-05
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	3e-04
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	0.001

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAI 232
             +  +G+  L     T  ++K  +R      HPD+  G   ++ A+  F E+  ++   
Sbjct: 34  TKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 89

Query: 233 KQERK 237
           + + +
Sbjct: 90  ENQGQ 94

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 7/66 (10%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAE----AKFKEVMVSYEA 231
           ++++ GL    +       +   F+   +++HPD+     +A +     +   +  +++ 
Sbjct: 3   YFTLFGLPA--RYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQT 60

Query: 232 IKQERK 237
           ++    
Sbjct: 61  LRHPLM 66

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 177 YSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQER 236
             +L L R  +       ++ A++ ++   HPD+       + A  +E+   +   K E 
Sbjct: 14  LELLKLPR--QLWGDFGRMQQAYKQQSLLLHPDKGG-----SHALMQELNSLWGTFKTEV 66

Query: 237 K 237
            
Sbjct: 67  Y 67

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 173 LSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAI 232
           L    SV+           E+E K   R    ++HPD+N  N + A   FK +      +
Sbjct: 15  LKEVTSVVEQAW----KLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL 70

Query: 233 KQERK 237
           +++  
Sbjct: 71  EKQAF 75

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 176 HYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQE 235
           +Y +LG+ +       E EI+ A++  A ++HPD+NQG+KE AEAKFKE+  +YE +   
Sbjct: 5   YYEILGVSK----TAEEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDS 59

Query: 236 RK 237
           +K
Sbjct: 60  QK 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.78
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.7
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.69
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.67
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.65
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.64
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.55

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.5e-19  Score=131.24  Aligned_cols=61  Identities=43%  Similarity=0.758  Sum_probs=56.9

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||+||++|++++|||+++++.. +.++|+.|++||+||+||.+|.
T Consensus         3 ~dyY~vLgv~~~A----s~~eIk~aYr~l~~~~HPDk~~~~~~-~~~~f~~i~~Ay~vL~d~~~R~   63 (75)
T d1xbla_           3 QDYYEILGVSKTA----EEREIRKAYKRLAMKYHPDRNQGDKE-AEAKFKEIKEAYEVLTDSQKRA   63 (75)
T ss_dssp             CCTTTTTCCSSSC----CHHHHHHHHHHHHHHTCCTTCTTTCH-HHHHHHHHHHHHHHTTSSHHHH
T ss_pred             CCHHHHcCCCCCc----CHHHHHHHHHHHHhhhhhhccCCChH-HHHHHHHHHHHHHhcCCHHHHH
Confidence            6999999999999    99999999999999999999987654 7889999999999999999885

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3e-18  Score=129.42  Aligned_cols=62  Identities=23%  Similarity=0.432  Sum_probs=56.6

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN-----KEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~-----~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .|||+||||++++    |.++||++|++|+++||||++..+     .+.++++|+.|++||+||+||.+|.
T Consensus        16 ~d~Y~iLgv~~~a----s~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~   82 (94)
T d1wjza_          16 KDWYSILGADPSA----NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK   82 (94)
T ss_dssp             SCHHHHTTCCTTC----CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred             cChHHHcCCCCCc----CHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            5999999999999    999999999999999999998654     3458899999999999999999885

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.5e-17  Score=120.88  Aligned_cols=60  Identities=40%  Similarity=0.669  Sum_probs=55.7

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      +|||+||||++++    |.++|++||+++++++|||++....  +.++|+.|++||+||+||.+|.
T Consensus         3 kdyY~iLgv~~~a----s~~eIk~ay~~l~~~~hPD~~~~~~--~~~~~~~i~~Ay~vLsdp~~R~   62 (77)
T d1hdja_           3 KDYYQTLGLARGA----SDEEIKRAYRRQALRYHPDKNKEPG--AEEKFKEIAEAYDVLSDPRKRE   62 (77)
T ss_dssp             CCSHHHHTCCTTC----CHHHHHHHHHHHHHTTCTTTCCCTT--HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CChHHHcCCCCCc----CHHHHHHHHHHHHHHhccccccchh--HHHHHHHHHHHHHHhcCHHHHH
Confidence            5899999999999    9999999999999999999987643  6889999999999999999985

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.69  E-value=2e-18  Score=134.26  Aligned_cols=59  Identities=29%  Similarity=0.409  Sum_probs=53.4

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      .++|+||||+++|  ..+.++||+|||+||++||||++++     .++|++|++||+||+||.+|.
T Consensus         8 ~~ly~iLGv~~~a--~~~~~~IKkAYrkla~k~HPDk~~~-----~e~F~~I~~AY~vLsd~~kR~   66 (114)
T d1gh6a_           8 LQLMDLLGLERSA--WGNIPLMRKAYLKKCKEFHPDKGGD-----EEKMKKMNTLYKKMEDGVKYA   66 (114)
T ss_dssp             HHHHHHTTCCTTS--CSCHHHHHHHHHHTTTTCCTTTCCT-----TTTTHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCCCCCC--CCCHHHHHHHHHHHHHHhcccchhh-----HHHHHHHHHHHHHhCCHHHHH
Confidence            5899999999987  3368899999999999999999985     468999999999999999886

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.7e-17  Score=124.04  Aligned_cols=63  Identities=24%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             CccccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhh
Q 026279          172 SLSHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKD  238 (241)
Q Consensus       172 ~~~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR  238 (241)
                      .+.++|+||||+.++    |.++||+|||+|+++||||+++++.+.|.++|+.|++||++|+++..+
T Consensus        14 ~~~~~y~iL~v~~~a----s~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~~~~~   76 (88)
T d1iura_          14 ILKEVTSVVEQAWKL----PESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSS----CSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            457999999999999    999999999999999999999998888999999999999999876544

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.65  E-value=3.8e-17  Score=119.95  Aligned_cols=60  Identities=18%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGNKEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .++|+||||++++  ..|.++||+||+++++++|||++++     .++|++|++||++|+|+.+|..
T Consensus        11 ~~~y~iLgl~~~~--~~~~~~IkkaYr~l~~~~HPDk~g~-----~e~~~~in~Ay~~L~d~~~r~~   70 (79)
T d1fafa_          11 ERLLELLKLPRQL--WGDFGRMQQAYKQQSLLLHPDKGGS-----HALMQELNSLWGTFKTEVYNLR   70 (79)
T ss_dssp             HHHHHHHTCCSSS--TTCHHHHHHHHHHHHHHSSGGGSCC-----HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCC--CCCHHHHHHHHHHHHHHhCcccCCC-----HHHHHHHHHHHHHHCCHHHHHH
Confidence            6899999999976  4589999999999999999999865     5789999999999999988753

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=8.7e-17  Score=116.34  Aligned_cols=63  Identities=13%  Similarity=0.294  Sum_probs=55.0

Q ss_pred             ccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----hHHHHHHHHHHHHHHHHhcChhhhc
Q 026279          175 HHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN----KEAAEAKFKEVMVSYEAIKQERKDM  239 (241)
Q Consensus       175 d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~----~~~a~ekF~~I~~AYevL~dp~kR~  239 (241)
                      |||+||||++.+  .++.++||++|+++++++|||++.+.    ...+...|+.|++||+||+||.+|.
T Consensus         2 nyy~lLgl~~~~--~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~   68 (76)
T d1fpoa1           2 DYFTLFGLPARY--QLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA   68 (76)
T ss_dssp             HHHHHTTCCSSS--CCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             ChHHHCCCCCCC--CCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            799999999865  34799999999999999999997543    3347889999999999999999985

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=1e-15  Score=116.26  Aligned_cols=63  Identities=19%  Similarity=0.375  Sum_probs=56.5

Q ss_pred             cccchhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--hHHHHHHHHHHHHHHHHhcChhhhcC
Q 026279          174 SHHYSVLGLDRLRKAPYTEAEIKTAFRAKAKEFHPDQNQGN--KEAAEAKFKEVMVSYEAIKQERKDMN  240 (241)
Q Consensus       174 ~d~Y~ILGl~~~a~~~~t~~eIKkAYRklakk~HPDk~~~~--~~~a~ekF~~I~~AYevL~dp~kR~~  240 (241)
                      .++|++|||...+    |.++||+||+++++.+|||++++.  ...|...|+.|++||++|+||.+|..
T Consensus        33 ~~~y~~Lgl~~~~----t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~   97 (98)
T d1nz6a_          33 ETKWKPVGMADLV----TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL   97 (98)
T ss_dssp             CCSCCCCCGGGCC----SHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred             ccCCeecCCCccC----CHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhc
Confidence            4679999999998    999999999999999999997654  34588999999999999999999863