Citrus Sinensis ID: 026286

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Secondary Structure (PSIPRED)
cEEEEcccccccccHHHHHHccccccEEEEccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHccccccccccccHHcccccccccccccEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEHcccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEEccccccccccccccHHHHHHHHHcHcccEEEEccccccHHHHHHHHHccccccEEEccccccEcccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccHHHHHcccccccccHHcEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MALCLLDFLCadvdlfpgsasagslqtlrlprsemsDSIVAQIAGRLSAVTFLDlsycskigAPALEAIGKHCKLLVVLCRnmhpldtadklsqdDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALlefldlrgcwdvklddkfmkgnfpnlkvlgpfvmdyyeindwddcsdysdgseYLAWEFLagemgdyddddeiyegmwddegrlEELELRFYdgieedagiygwppsp
Flexible Loop (DISEMBL)
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDtadklsqddEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMkgnfpnlkvlgpFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIeedagiygwppsp
Low Complexity Region (SEG)
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAgemgdyddddeiyegmWDDEGRleelelRFYDGIEEDAGIYGWPPSP
Disordered region (IsUnstruct)
**LCLLDFLCADVDLFPGS******************SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD******************PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGW****
Disordered Region (DISOPRED)
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGI*GWP***
Disordered Region (DISEMBL)
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Disordered Region (DISPRO)
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q9ZPE4	317	F-box protein FBW2 OS=Ara	yes	no	0.883	0.668	0.588	5e-66
Q9M0U9	302	F-box protein SKIP19 OS=A	no	no	0.554	0.440	0.354	2e-12
Q9FDX1	300	F-box protein SKIP1 OS=Ar	no	no	0.625	0.5	0.321	1e-11
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.579	0.309	0.319	7e-10
Q9M096	301	Putative F-box/LRR-repeat	no	no	0.537	0.428	0.275	1e-06
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.454	0.443	0.309	0.0004

>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1

 Score =  250 bits (639), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 166/226 (73%), Gaps = 14/226 (6%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78
           +  AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L  
Sbjct: 102 AQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLRE 161

Query: 79  LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 138
            CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+L
Sbjct: 162 FCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLEL 221

Query: 139 RGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-G 194
           RGCWDV+LD+KF K  FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G
Sbjct: 222 RGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDG 281

Query: 195 EMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
            MG++ +D+  +E  WDD    E   L        D   + WPPSP
Sbjct: 282 VMGEFYEDE--FEHGWDDNFYAENAVL--------DMEPHIWPPSP 317

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 80/141 (56%), Gaps = 8/141 (5%)

Query: 22  AGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80
           + +L++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G+ C  +  L 
Sbjct: 114 SSNLRSLRLIRCSQITDDGFVEAVVKL-PLEELELSYCS-FSVESLRVVGQCCLNMKTLK 171

Query: 81  RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140
            N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LDLR 
Sbjct: 172 LNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRR 226

Query: 141 CWDVKLDDKFMKGNFPNLKVL 161
           C++V L     K  F ++KV+
Sbjct: 227 CFNVNLVGDLQKRCFESVKVV 247

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 81/165 (49%), Gaps = 15/165 (9%)

Query: 10  CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA 68
           C+D  L   +    +LQ L +  S  ++D+ + +IA R  ++  LD+SYC +I    L  
Sbjct: 99  CSDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVM 158

Query: 69  IGKHCKLLVVLCRNMH----------PLDTADKLSQD--DEANAIASTMPKLKRLEMAYH 116
           IG++C  L +L RN+           P +  D   QD   EA+AI   M  L+ LE+ + 
Sbjct: 159 IGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFS 218

Query: 117 VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 161
            +S + +  I   C  LE+LDL GC  V L  + +  N   LK L
Sbjct: 219 RLSVKGLASICEGCPKLEYLDLFGC--VHLSSRDITSNVSRLKWL 261

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score = 64.3 bits (155), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 22  AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80
           + +L++L L R   ++D  VA+   ++  + +L++SYC   G  +L  IG+ C  L  L 
Sbjct: 276 SSNLKSLGLVRCFPITDEGVAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLK 334

Query: 81  RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140
            N  P         DD A AIA +MP+L+ L++  + ++ + +  IL  C  LE LDLR 
Sbjct: 335 LNRAPEIMFSNSGFDDNAKAIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQ 394

Query: 141 CWDVKLDDKFMKGNFPNLKVL 161
           C+++ L     K  F  +K L
Sbjct: 395 CFNINLVGDLKKRCFERIKDL 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 16/145 (11%)

Query: 35  MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM----------- 83
           ++D+ + +IA     +  LD+SY   I   +L  +G+ C+ L +L RN+           
Sbjct: 137 VTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTI 196

Query: 84  -HPLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140
             PLD      +  + EA  I   M +LK LE+ Y  ++   +  +   C+ LE++DLRG
Sbjct: 197 VAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRG 256

Query: 141 CWDVKLDDKFMKGNFPNLKVLGPFV 165
           C  +   D  +  N   LK L   +
Sbjct: 257 CISLTRSD--INTNTSGLKNLTEII 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 40  VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99
           V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A 
Sbjct: 138 VVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVAL 193

Query: 100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 152
           AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct: 194 AIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
224063261	321	predicted protein [Populus trichocarpa]	0.9	0.672	0.733	8e-80
356508073	321	PREDICTED: F-box protein FBW2-like isofo	0.916	0.685	0.695	1e-74
449436998	318	PREDICTED: F-box protein FBW2-like [Cucu	0.925	0.698	0.646	4e-74
255545780	329	ubiquitin-protein ligase, putative [Rici	0.937	0.683	0.663	3e-73
225467167	317	PREDICTED: F-box protein FBW2 isoform 1	0.891	0.675	0.643	2e-70
147787397	225	hypothetical protein VITISV_035646 [Viti	0.816	0.871	0.608	4e-65
18413178	317	F-box protein FBW2 [Arabidopsis thaliana	0.883	0.668	0.588	3e-64
297813231	317	F-box family protein [Arabidopsis lyrata	0.883	0.668	0.575	3e-63
359492882	296	PREDICTED: F-box protein FBW2 [Vitis vin	0.787	0.638	0.602	1e-61
242065902	365	hypothetical protein SORBIDRAFT_04g02735	0.895	0.589	0.565	4e-59

>gi|224063261|ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|222842792|gb|EEE80339.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 162/221 (73%), Positives = 182/221 (82%), Gaps = 5/221 (2%)

Query: 22  AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81
           AGSLQTLR+PRS++ DSIV QIAGRLS VTFLD+SYC+KI   ALEAIGKHCKLLV LCR
Sbjct: 104 AGSLQTLRIPRSDIGDSIVEQIAGRLSTVTFLDVSYCNKISGRALEAIGKHCKLLVGLCR 163

Query: 82  NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141
           NMHPLDT    +QDDEA AIA+TMPKLKRLEMAYH++STE +L+ILSSC  LEF+DLRGC
Sbjct: 164 NMHPLDTEGLEAQDDEAYAIATTMPKLKRLEMAYHLVSTESLLQILSSCTNLEFMDLRGC 223

Query: 142 WDVKLDDKFMKGNFPNLKVLGPFVM-DYYEINDW-DDCSDYSDGSEYLAWEFLAGEMGDY 199
           W+V LD+KF K  F  L VLGP VM DYYE NDW +DCS+YSD S+YLAW FLA   G  
Sbjct: 224 WNVNLDNKFFKEKFQKLTVLGPLVMEDYYEANDWEEDCSEYSDDSDYLAWGFLA-GDGGD 282

Query: 200 DDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
            DDDE Y+ MWDDEGRLEELELRFY+G   DAG+YGWPPSP
Sbjct: 283 YDDDESYDEMWDDEGRLEELELRFYEGA--DAGLYGWPPSP 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508073|ref|XP_003522785.1| PREDICTED: F-box protein FBW2-like isoform 1 [Glycine max] gi|356508075|ref|XP_003522786.1| PREDICTED: F-box protein FBW2-like isoform 2 [Glycine max]

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 178/223 (79%), Gaps = 3/223 (1%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78
           + +A SL TLRLPRS M+DSIV QIAGRLS ++FLD+SYC KIG  ALE IGK+CKLL  
Sbjct: 101 AENACSLHTLRLPRSSMNDSIVEQIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEG 160

Query: 79  LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 138
           LCRNMHPLDTA K  QDDEA AIASTMPKLK LEMAYH+IST  VL+IL++C  LEFLD 
Sbjct: 161 LCRNMHPLDTASKPFQDDEAYAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQ 220

Query: 139 RGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGD 198
           RGCW V LD  F+K  FP LKVLGPFV+D YE + WDD SD SD SEYLAW+F+AG M +
Sbjct: 221 RGCWGVTLDHMFLKQKFPKLKVLGPFVLDTYESDGWDDFSDVSDSSEYLAWDFVAGGMEE 280

Query: 199 -YDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
            Y DD + Y+GMWDDEGRL+EL+  FY+GI EDAG+Y WPPSP
Sbjct: 281 YYVDDSDSYDGMWDDEGRLDELQFGFYEGI-EDAGMY-WPPSP 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436998|ref|XP_004136279.1| PREDICTED: F-box protein FBW2-like [Cucumis sativus] gi|449524052|ref|XP_004169037.1| PREDICTED: F-box protein FBW2-like isoform 1 [Cucumis sativus] gi|449524054|ref|XP_004169038.1| PREDICTED: F-box protein FBW2-like isoform 2 [Cucumis sativus] gi|449524056|ref|XP_004169039.1| PREDICTED: F-box protein FBW2-like isoform 3 [Cucumis sativus]

 Score =  283 bits (725), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 170/226 (75%), Gaps = 4/226 (1%)

Query: 15  LFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK 74
            F  +  AGSLQTLRLPRS +SD++  QIAGRL AVTFLDLSYC KI A  LE+IGK+CK
Sbjct: 97  FFSIADHAGSLQTLRLPRSNISDAVAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCK 156

Query: 75  LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE 134
            LV +CRN+HPL TA   S DDEA  IA+TMPKLK LEMAYH +ST+ +L ILSSC  LE
Sbjct: 157 ALVGMCRNLHPLHTAGISSPDDEAYTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPDLE 216

Query: 135 FLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAG 194
           FLDLRGC DV+LDDKF+   FP L+VLGP V D YE N+WD+ SDYS  SE LAW+F AG
Sbjct: 217 FLDLRGCGDVRLDDKFLAEKFPKLRVLGPLVRDVYERNEWDEGSDYSYISEDLAWDFSAG 276

Query: 195 EMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
               Y DD   ++  WDDEGRLE LELRFY+G++ED   +GWPPSP
Sbjct: 277 ----YFDDAGSFDDQWDDEGRLEGLELRFYEGVDEDNEAFGWPPSP 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545780|ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547036|gb|EEF48533.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 156/235 (66%), Positives = 186/235 (79%), Gaps = 10/235 (4%)

Query: 15  LFPGSA-SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC 73
           +FP  A  AGSLQTLR PRSE+SDSIV QIAGRLS +TFLD+S+C++I A ALEAIGK+C
Sbjct: 96  IFPFLADHAGSLQTLRTPRSEISDSIVEQIAGRLSTITFLDVSHCNEISARALEAIGKNC 155

Query: 74  KLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH-VISTEIVLKILSSCAL 132
           KLL  LCRN+    +A++L QDDEA AIASTMPKLK LE+AYH +I+TE VLKILSSC  
Sbjct: 156 KLLSGLCRNVELSSSANQLLQDDEAQAIASTMPKLKHLEVAYHLLINTESVLKILSSCPE 215

Query: 133 LEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDD-CSD----YSDGSEYL 187
           LEFL+L GCWDVK D  F++  FP LKV+GP ++DYY++NDW D CS+    YSD SEY 
Sbjct: 216 LEFLNLTGCWDVKFDRNFLQEKFPKLKVVGPHLLDYYDMNDWGDYCSEYSDAYSDASEYF 275

Query: 188 AWEFLAGEM--GDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
           AWE  +G+M   D DDDD+ Y+GMWDDE RLEELELRFY+G  EDAG+YGWP SP
Sbjct: 276 AWEIFSGDMEDYDDDDDDDSYDGMWDDEQRLEELELRFYEG-NEDAGLYGWPLSP 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467167|ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera] gi|359496684|ref|XP_003635300.1| PREDICTED: F-box protein FBW2 isoform 2 [Vitis vinifera] gi|296085646|emb|CBI29445.3| unnamed protein product [Vitis vinifera]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 141/219 (64%), Positives = 170/219 (77%), Gaps = 5/219 (2%)

Query: 22  AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81
           A SLQTLRLPRSE+SD IV ++A +LS +TFLD+SYC K+GAPALEAIGKHCK L  L R
Sbjct: 104 AKSLQTLRLPRSEISDPIVEEVAWKLSTITFLDVSYCRKMGAPALEAIGKHCKFLTGLRR 163

Query: 82  NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141
            MHPL+  DKL+QDDEA AIA+TMPKLK LE+AY ++STE VLKIL+SC  LE LD+RGC
Sbjct: 164 IMHPLEIIDKLTQDDEALAIAATMPKLKHLEIAYLLVSTEPVLKILASCCELELLDVRGC 223

Query: 142 WDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDD 201
           W+VKLD+K +K  F  LKV+GP V+D YE N WDDCS YS  S YLAW+F+AGEM  Y  
Sbjct: 224 WNVKLDEKLIK-KFSGLKVVGPLVIDCYEGNGWDDCSAYSGSSGYLAWDFVAGEMDYY-- 280

Query: 202 DDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
           DDE+Y   W+DE  +++LELRFYDG + D   + WP SP
Sbjct: 281 DDELY-AAWEDES-MDDLELRFYDGFDADNAGFDWPQSP 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787397|emb|CAN62342.1| hypothetical protein VITISV_035646 [Vitis vinifera]

 Score =  253 bits (647), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/222 (60%), Positives = 162/222 (72%), Gaps = 26/222 (11%)

Query: 22  AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81
           AGSLQTL+L RSE+SDS+V +IAGR S +TFLD+S C+K+G+ ALEAIGK+CK LV LCR
Sbjct: 27  AGSLQTLQLIRSEISDSLVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCR 86

Query: 82  NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141
           NMHPL TA KLSQD+EA+AIA+TMPKLK LEMAYH++ST+ VL+ILS C  LE LDLRGC
Sbjct: 87  NMHPLTTAGKLSQDEEAHAIATTMPKLKHLEMAYHLLSTKSVLEILSCCPELELLDLRGC 146

Query: 142 WDVKLDDKFMKGNFPNLKVLGPFVMD---YYEINDWDDCSDYSDGSEYLAWEFLAGEMGD 198
           W V+L+ KF+K  FP L+VLGP V+D   YYE+N+ DD SDY                  
Sbjct: 147 WHVELNVKFLKEKFPKLRVLGPVVVDYCRYYEMNECDDYSDY------------------ 188

Query: 199 YDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
               DE  +G WDDEG LEELE+RFY+G  E    YGWP SP
Sbjct: 189 ----DESSDGTWDDEGGLEELEVRFYEGFGEHPE-YGWPTSP 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413178|ref|NP_567343.1| F-box protein FBW2 [Arabidopsis thaliana] gi|30680931|ref|NP_849346.1| F-box protein FBW2 [Arabidopsis thaliana] gi|42572853|ref|NP_974523.1| F-box protein FBW2 [Arabidopsis thaliana] gi|145332987|ref|NP_001078359.1| F-box protein FBW2 [Arabidopsis thaliana] gi|238480265|ref|NP_001154215.1| F-box protein FBW2 [Arabidopsis thaliana] gi|75267749|sp|Q9ZPE4.1|FBW2_ARATH RecName: Full=F-box protein FBW2; AltName: Full=SKP1-interacting partner 18 gi|4325371|gb|AAD17367.1| contains similarity to Medicago truncatula N7 protein (GB:Y17613) [Arabidopsis thaliana] gi|7267540|emb|CAB78022.1| putative protein [Arabidopsis thaliana] gi|21536818|gb|AAM61150.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|27311651|gb|AAO00791.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|30984530|gb|AAP42728.1| At4g08980 [Arabidopsis thaliana] gi|222423880|dbj|BAH19904.1| AT4G08980 [Arabidopsis thaliana] gi|332657303|gb|AEE82703.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657304|gb|AEE82704.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657305|gb|AEE82705.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657306|gb|AEE82706.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657307|gb|AEE82707.1| F-box protein FBW2 [Arabidopsis thaliana]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 133/226 (58%), Positives = 166/226 (73%), Gaps = 14/226 (6%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78
           +  AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L  
Sbjct: 102 AQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLRE 161

Query: 79  LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 138
            CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+L
Sbjct: 162 FCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLEL 221

Query: 139 RGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-G 194
           RGCWDV+LD+KF K  FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G
Sbjct: 222 RGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDG 281

Query: 195 EMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
            MG++ +D+  +E  WDD    E   L        D   + WPPSP
Sbjct: 282 VMGEFYEDE--FEHGWDDNFYAENAVL--------DMEPHIWPPSP 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813231|ref|XP_002874499.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297320336|gb|EFH50758.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  247 bits (631), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/226 (57%), Positives = 167/226 (73%), Gaps = 14/226 (6%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78
           +  AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC K+G  A++A+GKHCK L  
Sbjct: 102 AQHAGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKVGPEAIQALGKHCKSLRE 161

Query: 79  LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 138
            CRNMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILSSC  LEFL+L
Sbjct: 162 FCRNMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSSCIFLEFLEL 221

Query: 139 RGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-G 194
           RGCWDV+LD+KF K  FP++KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G
Sbjct: 222 RGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDG 281

Query: 195 EMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP 240
            MG++ +D+  ++  WDD    +   L        D   + WPPSP
Sbjct: 282 VMGEFYEDE--FDHGWDDNFNADNAIL--------DMEPHIWPPSP 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492882|ref|XP_002285756.2| PREDICTED: F-box protein FBW2 [Vitis vinifera]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/214 (60%), Positives = 157/214 (73%), Gaps = 25/214 (11%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78
           +  AGSLQTL+L RSE+SDS+V +IAGR S +TFLD+S C+K+G+ ALEAIGK+CK LV 
Sbjct: 100 AEHAGSLQTLQLIRSEISDSLVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVG 159

Query: 79  LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 138
           LCRNMHPL TA KLSQD+EA+AIA+TMPKLK LEMAYH++ST+ VL+ILS C  LE LDL
Sbjct: 160 LCRNMHPLTTAGKLSQDEEAHAIATTMPKLKHLEMAYHLLSTKSVLEILSCCPELELLDL 219

Query: 139 RGCWDVKLDDKFMKGNFPNLKVLGPFVMD---YYEINDWDDCSDYSDGSEYLAWEFLAGE 195
           RGCW V+L+ KF+K  FP L+VLGP V+D   YYE+N+ DD SDY               
Sbjct: 220 RGCWHVELNVKFLKEKFPKLRVLGPVVVDYCRYYEMNECDDYSDY--------------- 264

Query: 196 MGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEE 229
                  DE  +G WDDEG LEELE+RFY+G  E
Sbjct: 265 -------DESSDGTWDDEGGLEELEVRFYEGFGE 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065902|ref|XP_002454240.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor] gi|241934071|gb|EES07216.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor]

 Score =  233 bits (595), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 154/221 (69%), Gaps = 6/221 (2%)

Query: 21  SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80
           +A +L+TL +PRSE+SDSIV  +A RLS VTFLD+S C+KIGA ALEA GKHCK LV L 
Sbjct: 150 NARALRTLEIPRSEISDSIVETVAPRLSNVTFLDISSCTKIGARALEAFGKHCKSLVGLR 209

Query: 81  RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 140
           R MHP+D  DK+ Q DEA+AIA +MPKL+ LEM Y +I+TE VL+IL  C  L+FLDLRG
Sbjct: 210 RVMHPIDLVDKVCQHDEAHAIACSMPKLRHLEMGYMLIATEAVLEILGQCRDLKFLDLRG 269

Query: 141 CWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYD 200
           CW V  DDKF++   P L+VLGP V D YE + W++CSDYSD S   +WEF+  +     
Sbjct: 270 CWTV--DDKFLRERHPGLRVLGPRVDDCYENSYWEECSDYSDDSSIYSWEFMDDDYYAVG 327

Query: 201 DDDEIYEGMWDDEGRLEELELRFY-DGIEEDAGIYGWPPSP 240
            DD   E +WDD   LE LE+RFY  G  E    + WPPSP
Sbjct: 328 SDD---EAIWDDGQGLENLEVRFYGGGFSESFAGFDWPPSP 365

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2122308	317	FBW2 "AT4G08980" [Arabidopsis	0.870	0.659	0.573	3.1e-60
TAIR|locus:2115949	302	AT4G05460 "AT4G05460" [Arabido	0.591	0.470	0.364	3.7e-14
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.625	0.5	0.327	1.9e-12
TAIR|locus:2118736	301	AT4G30640 "AT4G30640" [Arabido	0.625	0.498	0.275	2.4e-05
TAIR|locus:2140715	220	AT4G03630 "AT4G03630" [Arabido	0.420	0.459	0.349	9.9e-05
TAIR|locus:2115979	307	AT4G05490 "AT4G05490" [Arabido	0.495	0.387	0.307	0.00018
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.454	0.443	0.309	0.00043

TAIR|locus:2122308 FBW2 "AT4G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 128/223 (57%), Positives = 156/223 (69%)

Query:    22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81
             AGSL+TL++PRS +++S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CR
Sbjct:   105 AGSLKTLKVPRSGLTNSGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCR 164

Query:    82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141
             NMHPLD A  +S DDEA AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGC
Sbjct:   165 NMHPLDVASVVSHDDEAYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGC 224

Query:   142 WDVKLDDKFMKGNFPNLKVLGPFVMDYYE-INDWDDC-SDY-SDGSEYLAWEFLAXXXXX 198
             WDV+LD+KF K  FP++KVLGP V+ +Y+ INDW+DC SDY SDGS+YLAWEF       
Sbjct:   225 WDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMG 284

Query:   199 XXXXXXXXXXXWDDEGRXXXXXXRFY-DGIEEDAGIYGWPPSP 240
                        WDD          FY +    D   + WPPSP
Sbjct:   285 EFYEDEFEHG-WDDN---------FYAENAVLDMEPHIWPPSP 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010608 "posttranscriptional regulation of gene expression" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

TAIR|locus:2115949 AT4G05460 "AT4G05460" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 55/151 (36%), Positives = 83/151 (54%)

Query:    13 VDLFPGSASAGS-LQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG 70
             VDL    A   S L++LRL R S+++D    +   +L  +  L+LSYCS     +L  +G
Sbjct:   104 VDLLNYIAHRSSNLRSLRLIRCSQITDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVG 161

Query:    71 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC 130
             + C  +  L  N HP     +   DD+A AIA TMPKL+ L++  + +S   +  IL +C
Sbjct:   162 QCCLNMKTLKLNKHP-----QKENDDDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNC 216

Query:   131 ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 161
             + LE LDLR C++V L     K  F ++KV+
Sbjct:   217 SNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 54/165 (32%), Positives = 82/165 (49%)

Query:    10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA 68
             C+D  L   +    +LQ L +  S  ++D+ + +IA R  ++  LD+SYC +I    L  
Sbjct:    99 CSDHALSYAADRCPNLQVLAIRSSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVM 158

Query:    69 IGKHCKLLVVLCRNM------H----PLDTADKLSQDD--EANAIASTMPKLKRLEMAYH 116
             IG++C  L +L RN+      H    P +  D   QD   EA+AI   M  L+ LE+ + 
Sbjct:   159 IGRNCPNLRILKRNLMDWSSRHIGSVPTEYLDACPQDGDTEADAIGKHMINLEHLEIQFS 218

Query:   117 VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 161
              +S + +  I   C  LE+LDL GC  V L  + +  N   LK L
Sbjct:   219 RLSVKGLASICEGCPKLEYLDLFGC--VHLSSRDITSNVSRLKWL 261

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2118736 AT4G30640 "AT4G30640" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 46/167 (27%), Positives = 77/167 (46%)

Query:    10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA 68
             C +  L   +    +L+ L +     ++D+ + +IA     +  LD+SY   I   +L  
Sbjct:   111 CTERSLSYAAERCPNLEVLWIKNCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLIT 170

Query:    69 IGKHCKLLVVLCRNMHP-----LDTA----DKLSQ-----DDEANAIASTMPKLKRLEMA 114
             +G+ C+ L +L RN+ P     L T     D L+      + EA  I   M +LK LE+ 
Sbjct:   171 LGRSCQNLKILKRNLLPRLGPSLPTIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIR 230

Query:   115 YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 161
             Y  ++   +  +   C+ LE++DLRGC  +   D  +  N   LK L
Sbjct:   231 YSTLTARGLDSVCKGCSNLEYMDLRGCISLTRSD--INTNTSGLKNL 275

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2140715 AT4G03630 "AT4G03630" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 36/103 (34%), Positives = 51/103 (49%)

Query:    44 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS 103
             A +L  +  L+LSYC  I    LEAIG  C  L  L  N          + D +A  IA 
Sbjct:    84 AMKLPLLEDLELSYCL-IKGKNLEAIGFACLHLKTLKLNCQGFKFPG-FTYDHDALGIAK 141

Query:   104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 146
              MP+L+ L++  + +S   +  I   C  LE LDLR C+++ L
Sbjct:   142 RMPELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINL 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115979 AT4G05490 "AT4G05490" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
 Identities = 39/127 (30%), Positives = 67/127 (52%)

Query:    22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81
             + +L+ LR+   +++   + +   +L  +  L+L YCS I     + IG+ C  L    +
Sbjct:   123 SSNLRRLRVKGGQITSVGIFEAIVKLPLLEELELLYCS-IEEEHFKTIGQACPNL----K 177

Query:    82 NMHPLDTADKLSQ-DDEANAIASTMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLR 139
              +  +     L++ D++A AIA TMP L  L++  + + T I L  IL  C  LE LDLR
Sbjct:   178 TLKLVGFWSHLNESDNDALAIADTMPGLLHLQLISNGL-TNIGLNAILDGCPHLECLDLR 236

Query:   140 GCWDVKL 146
              C+++ L
Sbjct:   237 QCFNINL 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00043, P = 0.00043
 Identities = 35/113 (30%), Positives = 54/113 (47%)

Query:    40 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 99
             V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A 
Sbjct:   138 VVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVAL 193

Query:   100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 152
             AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct:   194 AIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.139   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      240       218   0.00091  112 3  11 22  0.36    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  192 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.82u 0.11s 16.93t   Elapsed:  00:00:01
  Total cpu time:  16.82u 0.11s 16.93t   Elapsed:  00:00:01
  Start:  Fri May 10 05:59:16 2013   End:  Fri May 10 05:59:17 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPE4	FBW2_ARATH	No assigned EC number	0.5884	0.8833	0.6687	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0452 SubName- Full=Putative uncharacterized protein; (322 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-06

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 18/167 (10%)

Query: 6   LDF-LCADVDLFPGSASAG-SLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIG 62
           L+  +C   D      S    L+ L LP S  + D  +  +A     +  LDL  C  I 
Sbjct: 33  LELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENIT 92

Query: 63  APALEAIGKHCKLLVVL----CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 118
              + A+  +C  L  +     RN H       L  D   +A+      L+ +  A   +
Sbjct: 93  DSGIVALATNCPKLQTINLGRHRNGH-------LITDVSLSALGKNCTFLQTVGFAGCDV 145

Query: 119 STEIVLKILSSCAL-LEFLDLRGCW---DVKLDDKFMKGNFPNLKVL 161
           + + V ++ S C+  LE L L  C    D  +        FPNL VL
Sbjct: 146 TDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVL 192

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG4341	483	consensus F-box protein containing LRR [General fu	99.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.51
KOG4341	483	consensus F-box protein containing LRR [General fu	99.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.37
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.3
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.25
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.58
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.56
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.5
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.49
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.18
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.16
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.0
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.94
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.87
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.79
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.63
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.62
PLN03150	623	hypothetical protein; Provisional	97.55
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.54
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.5
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.44
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.33
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.08
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.02
PLN03150	623	hypothetical protein; Provisional	96.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.94
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.91
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.67
KOG4308	478	consensus LRR-containing protein [Function unknown	96.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.54
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.43
KOG4308	478	consensus LRR-containing protein [Function unknown	96.42
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	96.33
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.21
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.16
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.81
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.58
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.48
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	95.18
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.17
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.15
KOG4237	498	consensus Extracellular matrix protein slit, conta	94.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.43
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	94.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.96
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.87
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	93.77
PRK15386	426	type III secretion protein GogB; Provisional	93.6
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	93.07
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.02
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	91.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.02
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	87.04
PRK15386	426	type III secretion protein GogB; Provisional	85.9
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	84.68
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.48

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.58  E-value=1.7e-15  Score=133.42  Aligned_cols=142  Identities=23%  Similarity=0.298  Sum_probs=82.2

Q ss_pred             ccccccc-cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286            3 LCLLDFL-CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC   80 (240)
Q Consensus         3 l~~~~~~-~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~   80 (240)
                      |.+.+|+ +-+.++...+.+||++++|.+.+| .||+..+..+++.|++|++|+|-.|..+|+..++.+++.||+|+.|+
T Consensus       143 LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lN  222 (483)
T KOG4341|consen  143 LSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLN  222 (483)
T ss_pred             ccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhh
Confidence            4455555 555556666666666666666665 56666666666566666666666655566655555666666666666


Q ss_pred             EeeccCCC-------------------CCc---------------------------cCChHHHHHHHhcCCCCCEEEee
Q 026286           81 RNMHPLDT-------------------ADK---------------------------LSQDDEANAIASTMPKLKRLEMA  114 (240)
Q Consensus        81 L~~~~~~~-------------------~~~---------------------------~~~d~~~~~i~~~~~~L~~L~L~  114 (240)
                      ++.++-..                   .|+                           .++|..+..++..+.+|+.|..+
T Consensus       223 lSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s  302 (483)
T KOG4341|consen  223 LSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYS  302 (483)
T ss_pred             hccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhccc
Confidence            55433110                   011                           25556666666666666666666


Q ss_pred             Ccc-cCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          115 YHV-ISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       115 ~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ++. +++..+.++.++|++|++|-|++|.++
T Consensus       303 ~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f  333 (483)
T KOG4341|consen  303 SCTDITDEVLWALGQHCHNLQVLELSGCQQF  333 (483)
T ss_pred             CCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence            665 666666666666666666666666655

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.4e-14  Score=123.11  Aligned_cols=152  Identities=23%  Similarity=0.231  Sum_probs=112.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |+|+.=.+|-.+|.-|.++|..|+.|.|.+..+.|..+..+| +..+|+.|+|+.|+.+|..++..+..+|+.|..|+|+
T Consensus       190 lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNls  268 (419)
T KOG2120|consen  190 LDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLS  268 (419)
T ss_pred             hhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCch
Confidence            456666678888899999999999999999999998888888 7899999999999999999999999999999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc--cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNL  158 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~--it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~~L  158 (240)
                      .+...      ++..-.+++.--++|+.|+|+|++  +....+..+.+.||+|.+|||+.|..+  ++..+  --++++|
T Consensus       269 Wc~l~------~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l--~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  269 WCFLF------TEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML--KNDCFQEFFKFNYL  340 (419)
T ss_pred             Hhhcc------chhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc--CchHHHHHHhcchh
Confidence            76431      222223344445777777777776  666667777777777777777777766  33322  2445555


Q ss_pred             ccccC
Q 026286          159 KVLGP  163 (240)
Q Consensus       159 ~~L~~  163 (240)
                      ++|..
T Consensus       341 ~~lSl  345 (419)
T KOG2120|consen  341 QHLSL  345 (419)
T ss_pred             eeeeh
Confidence            55544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.50  E-value=4e-14  Score=124.80  Aligned_cols=158  Identities=26%  Similarity=0.366  Sum_probs=113.6

Q ss_pred             ccccccc-cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286            3 LCLLDFL-CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC   80 (240)
Q Consensus         3 l~~~~~~-~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~   80 (240)
                      ||..+|. .+|..+-.+.++|++|+.|-|..| ++++.++..++.+++.|+.|++..|..+++..+..++.+||.|+.|.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            4444544 677777777777788888888777 67777788887778888888887777777777777777888888887


Q ss_pred             EeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH-HHHhcCC
Q 026286           81 RNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK-FMKGNFP  156 (240)
Q Consensus        81 L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~-~l~~~~~  156 (240)
                      ++.+.      .++++++.++.   ..+..|..|.|.++..+.+...+.+..||+|+.+++-+|..++-... .++..+|
T Consensus       379 lshce------~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp  452 (483)
T KOG4341|consen  379 LSHCE------LITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP  452 (483)
T ss_pred             hhhhh------hhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence            76432      35666666654   34577888888888855555555566899999999999998843322 3457788


Q ss_pred             CCccccCCCC
Q 026286          157 NLKVLGPFVM  166 (240)
Q Consensus       157 ~L~~L~~~~~  166 (240)
                      ++++.+.+.+
T Consensus       453 ~i~v~a~~a~  462 (483)
T KOG4341|consen  453 NIKVHAYFAP  462 (483)
T ss_pred             cceehhhccC
Confidence            8888777543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.43  E-value=2.4e-13  Score=124.35  Aligned_cols=144  Identities=30%  Similarity=0.333  Sum_probs=119.2

Q ss_pred             cccccccc-cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEE
Q 026286            2 ALCLLDFL-CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL   79 (240)
Q Consensus         2 ~l~~~~~~-~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L   79 (240)
                      .|++..+. +||.++..++..|++|+.|.+.+| .+++.|+..++++||+|++|+|++|..+++.++.++++.||+|+.|
T Consensus       247 ~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l  326 (482)
T KOG1947|consen  247 SLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLREL  326 (482)
T ss_pred             ccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhh
Confidence            36677777 999999999999999999999989 4999999999999999999999999999999999999999999998


Q ss_pred             EEeecc----CCC---CCc-cCC-hHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcc--------------cEE
Q 026286           80 CRNMHP----LDT---ADK-LSQ-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL--------------EFL  136 (240)
Q Consensus        80 ~L~~~~----~~~---~~~-~~~-d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~L--------------e~L  136 (240)
                      .+....    +..   .+. ... +..+..++..|++|+++.|.++.+++.++..++.+||+|              +.|
T Consensus       327 ~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L  406 (482)
T KOG1947|consen  327 KLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVL  406 (482)
T ss_pred             hhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceE
Confidence            874322    111   111 122 467777888999999999999998888888888899877              777


Q ss_pred             eccCCCCCC
Q 026286          137 DLRGCWDVK  145 (240)
Q Consensus       137 dL~~C~~v~  145 (240)
                      +++.|..++
T Consensus       407 ~l~~~~~~t  415 (482)
T KOG1947|consen  407 NLSDCRLVT  415 (482)
T ss_pred             ecccCcccc
Confidence            778787773

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.9e-13  Score=114.39  Aligned_cols=152  Identities=18%  Similarity=0.211  Sum_probs=121.0

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   81 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L   81 (240)
                      |.|-+.+..|.....||++ .+|+.|+|+.| ++|..++..+.+.|+.|..|+|++|...++..-.+++.-.++|+.|+|
T Consensus       215 lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl  293 (419)
T KOG2120|consen  215 LSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL  293 (419)
T ss_pred             ccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence            5677888899999999954 88999999998 899999999999999999999999987777655556666789999999


Q ss_pred             eeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCCCC
Q 026286           82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNL  158 (240)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~~L  158 (240)
                      ++.+-     ...+..+..+++.||+|.+|+|+.|. +++ ++...+-+++.|++|.|+.|+.+  ....+  ....|.|
T Consensus       294 sG~rr-----nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  294 SGYRR-----NLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSL  365 (419)
T ss_pred             hhhHh-----hhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcce
Confidence            76532     23456788888999999999999998 888 44444458999999999999988  44322  2445666


Q ss_pred             ccccC
Q 026286          159 KVLGP  163 (240)
Q Consensus       159 ~~L~~  163 (240)
                      .+|..
T Consensus       366 ~yLdv  370 (419)
T KOG2120|consen  366 VYLDV  370 (419)
T ss_pred             EEEEe
Confidence            65555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.37  E-value=1.5e-12  Score=118.96  Aligned_cols=148  Identities=28%  Similarity=0.321  Sum_probs=109.5

Q ss_pred             cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecC-CCCCCHHH--HHHHHhcCCCCcEEEEeecc
Q 026286           10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPA--LEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus        10 ~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~-c~~it~~~--l~~l~~~c~~L~~L~L~~~~   85 (240)
                      .+...+..+...+++|+.|.+.+| .+++.++..++..+++|+.|++++ |..++...  ...+++.|++|+.|.++.+.
T Consensus       175 ~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  254 (482)
T KOG1947|consen  175 LLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG  254 (482)
T ss_pred             ccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence            455566667767888888888888 788877788888888888888877 34444333  44577778888888886442


Q ss_pred             CCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHH---HHhcCCCCccc
Q 026286           86 LDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVL  161 (240)
Q Consensus        86 ~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L  161 (240)
                            .+++.++.+++..||+|++|.+.+|. +|+.++.+++++||.|++|+|++|..+  ++..   +...|++++.|
T Consensus       255 ------~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~l~~~~~~c~~l~~l  326 (482)
T KOG1947|consen  255 ------LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSGLEALLKNCPNLREL  326 (482)
T ss_pred             ------ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHHHHHHHHhCcchhhh
Confidence                  26788888888888888888888887 888888888888888888888888888  4432   23557777776


Q ss_pred             cCCC
Q 026286          162 GPFV  165 (240)
Q Consensus       162 ~~~~  165 (240)
                      ....
T Consensus       327 ~~~~  330 (482)
T KOG1947|consen  327 KLLS  330 (482)
T ss_pred             hhhh
Confidence            6543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.30  E-value=1.4e-11  Score=107.25  Aligned_cols=133  Identities=20%  Similarity=0.136  Sum_probs=68.5

Q ss_pred             ccccccccchhcHHHHHh---CC-CCCcEEEeeCCCCCHHHHHHH---HhcCccCcEEEecCCCCCCHHHHHHHHhc---
Q 026286            3 LCLLDFLCADVDLFPGSA---SA-GSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAIGKH---   72 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~---~~-~~L~~L~L~~~~itd~~l~~l---~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---   72 (240)
                      |.+..+.+++.++..+..   .+ ++|+.|.|++|.++..++..+   ...+++|+.|++++| .+++.++..+++.   
T Consensus       113 L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~  191 (319)
T cd00116         113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKA  191 (319)
T ss_pred             EEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHh
Confidence            445555555544444332   22 555666666665553333222   223455666666654 3554444433322   


Q ss_pred             CCCCcEEEEeeccCCCCCccCChHHHHHH---HhcCCCCCEEEeeCcccCHHHHHHHHhcC----CcccEEeccCCCC
Q 026286           73 CKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRGCWD  143 (240)
Q Consensus        73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i---~~~~~~L~~L~L~~~~it~~~l~~l~~~c----~~Le~LdL~~C~~  143 (240)
                      +++|+.|.++.+.+       ++.++..+   ...+++|++|++++|.+++.++..++..+    +.|++|++++|..
T Consensus       192 ~~~L~~L~L~~n~i-------~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         192 NCNLEVLDLNNNGL-------TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             CCCCCEEeccCCcc-------ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence            23666666654432       23333222   23456677777777766666666655543    5677777776643

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.25  E-value=7.9e-12  Score=108.21  Aligned_cols=120  Identities=23%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             HHHHhCCCCCcEEEeeCCCCCHHHHHHHH---hcCccCcEEEecCCCCCCHHHHHHHHhcC---CCCcEEEEeeccCCCC
Q 026286           16 FPGSASAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTA   89 (240)
Q Consensus        16 ~~i~~~~~~L~~L~L~~~~itd~~l~~l~---~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~   89 (240)
                      ..+.+.++.|+.+++++|+|...|+..++   ..||+|+.|||..|+ +|..+-.++++.+   |+|+.|+++.+     
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dc-----  251 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDC-----  251 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccc-----
Confidence            33344455555555555555555543332   235555555555543 4444444444432   34444444433     


Q ss_pred             CccCChHHHHHHHh----cCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCC
Q 026286           90 DKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWD  143 (240)
Q Consensus        90 ~~~~~d~~~~~i~~----~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~  143 (240)
                        .+.+.|+.+++.    ..|+|+.|.|.||.||.++...+..   .-|.|+.|+|++|..
T Consensus       252 --ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  252 --LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             --ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              233444444332    2355566666666655555444332   135555666655554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.21  E-value=2.2e-10  Score=99.61  Aligned_cols=134  Identities=22%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             ccccccccchhcHHHH---HhCCCCCcEEEeeCCCCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHH---hcC
Q 026286            3 LCLLDFLCADVDLFPG---SASAGSLQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIG---KHC   73 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i---~~~~~~L~~L~L~~~~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~---~~c   73 (240)
                      |.+..+.++..++..+   ...+++|++|+|++|.+++.++..+++.   +++|+.|+|++| .+++.++..+.   ..+
T Consensus       142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~  220 (319)
T cd00116         142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASL  220 (319)
T ss_pred             EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhccc
Confidence            5677777775544443   3456789999999999998887776654   459999999997 57776655443   467


Q ss_pred             CCCcEEEEeeccCCCCCccCChHHHHHHHhcC----CCCCEEEeeCcccCHHHHHHHH---hcCCcccEEeccCCCCC
Q 026286           74 KLLVVLCRNMHPLDTADKLSQDDEANAIASTM----PKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCWDV  144 (240)
Q Consensus        74 ~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~----~~L~~L~L~~~~it~~~l~~l~---~~c~~Le~LdL~~C~~v  144 (240)
                      |+|+.|.++.|+       +++.++..++..+    ++|++|++++|.|++.+...+.   ..+++|++|++++|..-
T Consensus       221 ~~L~~L~ls~n~-------l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         221 KSLEVLNLGDNN-------LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             CCCCEEecCCCc-------CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence            899999998774       4566777777665    7999999999999877765554   44578999999998766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=1.3e-11  Score=99.27  Aligned_cols=142  Identities=23%  Similarity=0.244  Sum_probs=55.7

Q ss_pred             cchhcHHHHHhC--CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286           10 CADVDLFPGSAS--AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   87 (240)
Q Consensus        10 ~tD~~L~~i~~~--~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~   87 (240)
                      .|-..+..++..  +.++++|+|.+|.|+.  +..+...+.+|+.|+|++| .|+.  +..+ ..+++|+.|.++.|.+.
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~--l~~l-~~L~~L~~L~L~~N~I~   77 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNN-QITK--LEGL-PGLPRLKTLDLSNNRIS   77 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS---
T ss_pred             cccccccccccccccccccccccccccccc--ccchhhhhcCCCEEECCCC-CCcc--ccCc-cChhhhhhcccCCCCCC
Confidence            345555555543  5689999999999877  5666667899999999996 4553  3333 23699999999988653


Q ss_pred             CCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccCCC
Q 026286           88 TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFV  165 (240)
Q Consensus        88 ~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~  165 (240)
                      ..       + ..+...+|+|++|.|++|+|++-.-...++.||+|+.|+|.+|+.......  .+...+|+|+.|....
T Consensus        78 ~i-------~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   78 SI-------S-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             S--------C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             cc-------c-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            21       1 123347899999999999987644445566899999999999987755444  4568999999998743

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.04  E-value=4.6e-10  Score=97.40  Aligned_cols=67  Identities=10%  Similarity=0.031  Sum_probs=32.3

Q ss_pred             HhCCCCCcEEEeeCCCCCHHHHHHHHh------------cCccCcEEEecCCCCCCHH---HHHHHHhcCCCCcEEEEee
Q 026286           19 SASAGSLQTLRLPRSEMSDSIVAQIAG------------RLSAVTFLDLSYCSKIGAP---ALEAIGKHCKLLVVLCRNM   83 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~itd~~l~~l~~------------~~~~L~~L~Ls~c~~it~~---~l~~l~~~c~~L~~L~L~~   83 (240)
                      .++|.+|++|.|.+|++...+=..+++            .-|+||++...+|. +.+.   .+....+.+|.|+.+++..
T Consensus       116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~q  194 (382)
T KOG1909|consen  116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQ  194 (382)
T ss_pred             HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEec
Confidence            345666666666666665544333222            13456666555532 2222   2223334445555555555


Q ss_pred             ccC
Q 026286           84 HPL   86 (240)
Q Consensus        84 ~~~   86 (240)
                      |.+
T Consensus       195 N~I  197 (382)
T KOG1909|consen  195 NGI  197 (382)
T ss_pred             ccc
Confidence            443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=7.8e-10  Score=98.46  Aligned_cols=124  Identities=20%  Similarity=0.066  Sum_probs=88.6

Q ss_pred             cHHHHHhC---CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCC
Q 026286           14 DLFPGSAS---AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD   90 (240)
Q Consensus        14 ~L~~i~~~---~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~   90 (240)
                      ++..|+.+   ..+|+.+.|.++.+...+....++.||+++.|+||.+-.-....+..|++.+|+|+.|+|+.|.+....
T Consensus       109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~  188 (505)
T KOG3207|consen  109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI  188 (505)
T ss_pred             cHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCc
Confidence            44445433   556777888888888777777888888888888888644455667778888888888888877664332


Q ss_pred             ccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           91 KLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        91 ~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .....       ..++.||.|.|++|.++...+..++..||.|+.|.|.++..+
T Consensus       189 ~s~~~-------~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~  235 (505)
T KOG3207|consen  189 SSNTT-------LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII  235 (505)
T ss_pred             cccch-------hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence            11111       156778888888888888888888888888888888777533

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=6.7e-10  Score=98.86  Aligned_cols=151  Identities=21%  Similarity=0.167  Sum_probs=106.7

Q ss_pred             ccccccchhcHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286            5 LLDFLCADVDLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM   83 (240)
Q Consensus         5 ~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~   83 (240)
                      |.++.+.+......++.|++++.|+|++|-++. ..+..+++.+|+|+.|+|+.|. +..-.-.......++||.|.|+.
T Consensus       128 Ldn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~  206 (505)
T KOG3207|consen  128 LDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNS  206 (505)
T ss_pred             ecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEecc
Confidence            455667776766788899999999999996654 7789999999999999999863 32211112222568899999987


Q ss_pred             ccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286           84 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus        84 ~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      |++       +...+..++..+|+|+.|.|.+|. +.-.....  +-...|+.|||+++..+.....-....+|.|+.|.
T Consensus       207 CGl-------s~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  207 CGL-------SWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             CCC-------CHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            754       567788888899999999999985 32222111  12357888899888888655443345666666666


Q ss_pred             CCC
Q 026286          163 PFV  165 (240)
Q Consensus       163 ~~~  165 (240)
                      ...
T Consensus       278 ls~  280 (505)
T KOG3207|consen  278 LSS  280 (505)
T ss_pred             ccc
Confidence            643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=7.1e-10  Score=89.19  Aligned_cols=126  Identities=21%  Similarity=0.251  Sum_probs=55.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |+|.+..++  .+..+...+.+|+.|+|++|.|+.  +..+. .+++|+.|++++| .|+.-. ..+.+.||+|+.|.++
T Consensus        24 L~L~~n~I~--~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l~-~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~L~   96 (175)
T PF14580_consen   24 LNLRGNQIS--TIENLGATLDKLEVLDLSNNQITK--LEGLP-GLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELYLS   96 (175)
T ss_dssp             --------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--EEE-T
T ss_pred             ccccccccc--cccchhhhhcCCCEEECCCCCCcc--ccCcc-ChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEECc
Confidence            445555555  244555567899999999999886  44443 6899999999995 576421 2344578999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH--HHHHHhcCCcccEEeccCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~--l~~l~~~c~~Le~LdL~~C~  142 (240)
                      .|.+...+      .+..+ ..+|+|+.|+|.+|.++...  -..++..+|+|+.||-....
T Consensus        97 ~N~I~~l~------~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   97 NNKISDLN------ELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             TS---SCC------CCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             CCcCCChH------HhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            88653221      12233 37899999999999987543  34667789999999886544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.58  E-value=6.7e-08  Score=96.53  Aligned_cols=38  Identities=26%  Similarity=0.346  Sum_probs=20.6

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      .+++|+.|+|++|.++......+...+++|+.|+|++|
T Consensus        91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n  128 (968)
T PLN00113         91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN  128 (968)
T ss_pred             CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC
Confidence            45666666666665543322333335556666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.56  E-value=1.9e-08  Score=96.71  Aligned_cols=129  Identities=22%  Similarity=0.205  Sum_probs=91.5

Q ss_pred             cccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286            4 CLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM   83 (240)
Q Consensus         4 ~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~   83 (240)
                      .+.+=..||.....+. ..++||.|+|++|+++.---. ...+++.|+.|+||+| +++.  +..-...|+.|++|..+.
T Consensus       365 ylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas-~~~kle~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  365 YLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS-KLRKLEELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHhcCcccccchhhhc-cccceeeeeecccccccCCHH-HHhchHHhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcC
Confidence            3445557777777666 678899999999966542222 2347888999999995 5553  222234578899999877


Q ss_pred             ccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286           84 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD  148 (240)
Q Consensus        84 ~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~  148 (240)
                      |.+.         .+..++ .+|.|+.++|+.|.++...+.+.+.. |+|++|||+|+.....+-
T Consensus       440 N~l~---------~fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~  493 (1081)
T KOG0618|consen  440 NQLL---------SFPELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDH  493 (1081)
T ss_pred             Ccee---------echhhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccch
Confidence            7541         122344 78999999999999998777776644 899999999998764343

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.52  E-value=2.8e-07  Score=88.66  Aligned_cols=140  Identities=19%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             chhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCC
Q 026286           11 ADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD   90 (240)
Q Consensus        11 tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~   90 (240)
                      +..-...++..+|+|++|.+++-.+...-+..++..+|||+.||+|++ +|+.-  ..+ .+++||+.|.+-.-.+    
T Consensus       136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~LknLq~L~mrnLe~----  207 (699)
T KOG3665|consen  136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SRLKNLQVLSMRNLEF----  207 (699)
T ss_pred             hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHH-hccccHHHHhccCCCC----
Confidence            445567788889999999998877766668888889999999999984 56642  222 3457888887743222    


Q ss_pred             ccCChHHHHHHHhcCCCCCEEEeeCccc-CHH-HHHHHH---hcCCcccEEeccCCCCCCCChHH---HHhcCCCCcccc
Q 026286           91 KLSQDDEANAIASTMPKLKRLEMAYHVI-STE-IVLKIL---SSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLG  162 (240)
Q Consensus        91 ~~~~d~~~~~i~~~~~~L~~L~L~~~~i-t~~-~l~~l~---~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~  162 (240)
                        .+...+..+. .+++|+.|++|..+- ... .+...+   ..+|+|++||.+|...   +...   +....|+|+.+.
T Consensus       208 --e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi---~~~~le~ll~sH~~L~~i~  281 (699)
T KOG3665|consen  208 --ESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI---NEEILEELLNSHPNLQQIA  281 (699)
T ss_pred             --CchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch---hHHHHHHHHHhCccHhhhh
Confidence              1235555665 789999999998872 222 233222   2479999999886433   3332   336677777776


Q ss_pred             CC
Q 026286          163 PF  164 (240)
Q Consensus       163 ~~  164 (240)
                      ..
T Consensus       282 ~~  283 (699)
T KOG3665|consen  282 AL  283 (699)
T ss_pred             hh
Confidence            54

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.50  E-value=1.5e-08  Score=84.92  Aligned_cols=133  Identities=19%  Similarity=0.162  Sum_probs=92.4

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  103 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~  103 (240)
                      ..+.+.+..|......+..+...+.+|+.|.+.++...|-..+..    +|+||.|.++.|.+..      ..++..++.
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~----Lp~LkkL~lsdn~~~~------~~~l~vl~e   88 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPK----LPKLKKLELSDNYRRV------SGGLEVLAE   88 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCC----cchhhhhcccCCcccc------cccceehhh
Confidence            445555655533333355566667888888888876544333333    3899999998873321      244556777


Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHH--HHhcCCCCccccCCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPFVM  166 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~~~  166 (240)
                      .+|+|++|++++|+|.+-.-..-++..++|..|++..|....+.+..  +-...|+|+.|.....
T Consensus        89 ~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen   89 KAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88999999999999886444455667889999999999988777664  3366788888777554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.49  E-value=1.6e-07  Score=93.82  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=24.9

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   84 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   84 (240)
                      .+++|+.|+|++|.++......+ .++++|+.|+|++|. ++......+ ..+++|+.|.++.|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n  222 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQ-LVGQIPREL-GQMKSLKWIYLGYN  222 (968)
T ss_pred             cCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCC-CcCcCChHH-cCcCCccEEECcCC
Confidence            34455555555554332211122 244555555555432 222212222 23345555555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.31  E-value=9.1e-08  Score=88.38  Aligned_cols=121  Identities=20%  Similarity=0.119  Sum_probs=79.8

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .|++|+.|.|++|+|+.-.-..+. .+..|++|+|+.| .|+- ..+......++|++|+|..|.+.+   .+. +++.+
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~N-si~~-l~e~af~~lssL~~LdLr~N~ls~---~IE-Daa~~  387 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFR-VLSQLEELNLSHN-SIDH-LAEGAFVGLSSLHKLDLRSNELSW---CIE-DAAVA  387 (873)
T ss_pred             hcccceeEeccccccccCChhHHH-HHHHhhhhccccc-chHH-HHhhHHHHhhhhhhhcCcCCeEEE---EEe-cchhh
Confidence            577888888888876642222332 5667888888874 3432 122223456888999887775532   232 34444


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHH
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF  150 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~  150 (240)
                      +. .+|+|++|.|.||+|..-.-.++. +++.||+|+|.++..-+....+
T Consensus       388 f~-gl~~LrkL~l~gNqlk~I~krAfs-gl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  388 FN-GLPSLRKLRLTGNQLKSIPKRAFS-GLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             hc-cchhhhheeecCceeeecchhhhc-cCcccceecCCCCcceeecccc
Confidence            44 799999999999997654444544 8999999999998866544443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.27  E-value=1.1e-05  Score=68.76  Aligned_cols=117  Identities=19%  Similarity=0.213  Sum_probs=56.9

Q ss_pred             CCCCCcEEEeeCCCCCH---HHHHHHHhcCccCcEEEecCCCCCCH-------HHHHHHH-----hcCCCCcEEEEeecc
Q 026286           21 SAGSLQTLRLPRSEMSD---SIVAQIAGRLSAVTFLDLSYCSKIGA-------PALEAIG-----KHCKLLVVLCRNMHP   85 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd---~~l~~l~~~~~~L~~L~Ls~c~~it~-------~~l~~l~-----~~c~~L~~L~L~~~~   85 (240)
                      .||+|+.++|+.|.+..   .-+..+..+-++|++|.+++|. +..       +++..++     +.-|.|+++....|+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            56777777777764432   3344445566667777776653 332       1222222     233566666665555


Q ss_pred             CCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHH----hcCCcccEEeccCCC
Q 026286           86 LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCW  142 (240)
Q Consensus        86 ~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~----~~c~~Le~LdL~~C~  142 (240)
                      +..+.    .....+..+.-.+|+.+.|.+|.|..+|+..++    ..|++|+.|||+.+.
T Consensus       169 lengs----~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt  225 (388)
T COG5238         169 LENGS----KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT  225 (388)
T ss_pred             hccCc----HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence            43221    111111222224555555555555555444332    245555555555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.18  E-value=7.8e-07  Score=82.36  Aligned_cols=57  Identities=21%  Similarity=0.151  Sum_probs=25.6

Q ss_pred             CCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCCC
Q 026286          107 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV  165 (240)
Q Consensus       107 ~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~  165 (240)
                      +|..|.|+.|+||.--. .+.+++|+|+.|+|..+..--..+-.+ +..+.|+.|+...
T Consensus       198 sL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN~irive~ltF-qgL~Sl~nlklqr  254 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRNRIRIVEGLTF-QGLPSLQNLKLQR  254 (873)
T ss_pred             hheeeecccCcccccCH-HHhhhcchhhhhhccccceeeehhhhh-cCchhhhhhhhhh
Confidence            44444444444443221 223456777777776554221111111 4455555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.18  E-value=2.3e-06  Score=82.44  Aligned_cols=67  Identities=19%  Similarity=0.232  Sum_probs=43.1

Q ss_pred             CccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH
Q 026286           47 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  120 (240)
Q Consensus        47 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~  120 (240)
                      -.+|+.|++++...++......++..+|+|++|.+++..       ...+....+..++|+|+.|+++++.|++
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-------~~~~dF~~lc~sFpNL~sLDIS~TnI~n  187 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-------FDNDDFSQLCASFPNLRSLDISGTNISN  187 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-------ecchhHHHHhhccCccceeecCCCCccC
Confidence            356777777776666666667777777777777775332       2334466666667777777777766554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=2e-06  Score=69.90  Aligned_cols=74  Identities=23%  Similarity=0.156  Sum_probs=54.8

Q ss_pred             cccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286            8 FLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM   83 (240)
Q Consensus         8 ~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~   83 (240)
                      +.+.-+++..+- .+++|+.|.+.+| .+.|.++..+..-.|+|+.|+|++|+.||+.++..+.+ +++|+.|.+..
T Consensus       111 s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~  185 (221)
T KOG3864|consen  111 SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD  185 (221)
T ss_pred             chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence            333344444443 6778888888888 78888888888778888888888888888888877754 58888887753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.00  E-value=7.8e-07  Score=83.08  Aligned_cols=119  Identities=19%  Similarity=0.192  Sum_probs=68.5

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChH-----
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-----   96 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~-----   96 (240)
                      .++|+.|+|++|.|+.  +..-.....+|++|++|.| ++|. ...++. .++.|+.|.++.|.+++.|+...-.     
T Consensus       244 l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrN-QLt~-LP~avc-KL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  244 LRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRN-QLTV-LPDAVC-KLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             hhhhheeccCcCceee--eeccHHHHhhhhhhccccc-hhcc-chHHHh-hhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            3445555555554443  1111122445555555553 3331 112232 3477888888888887776532111     


Q ss_pred             HHHHH-----------HhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286           97 EANAI-----------ASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD  148 (240)
Q Consensus        97 ~~~~i-----------~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~  148 (240)
                      .....           .+.|++|+.|.|..|+ ||-   ..-+.-+|.|+.|||+.++++.+..
T Consensus       319 evf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTL---PeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  319 EVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITL---PEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             HHHHhhccccccCchhhhhhHHHHHhcccccceeec---hhhhhhcCCcceeeccCCcCccCCC
Confidence            11111           2467899999999999 764   3334456899999999999885543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=6.7e-06  Score=66.94  Aligned_cols=105  Identities=18%  Similarity=0.158  Sum_probs=80.4

Q ss_pred             CcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHh
Q 026286           50 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILS  128 (240)
Q Consensus        50 L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~  128 (240)
                      ++.++-+++ .|...++..+ +.++.|+.|.+..+.      .+.|..+..|+.-.|+|+.|+|++|+ ||+.|+..+. 
T Consensus       103 IeaVDAsds-~I~~eGle~L-~~l~~i~~l~l~~ck------~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-  173 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHL-RDLRSIKSLSLANCK------YFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-  173 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHH-hccchhhhheecccc------chhhHHHHHhcccccchheeeccCCCeechhHHHHHH-
Confidence            677777774 6888888887 467888888885442      35677777888777999999999998 9999998877 


Q ss_pred             cCCcccEEeccCCCCCCCChH---HHHhcCCCCccccC
Q 026286          129 SCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKVLGP  163 (240)
Q Consensus       129 ~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~L~~  163 (240)
                      ++++|+.|.|++-..|..-+.   .++...|++++...
T Consensus       174 ~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~  211 (221)
T KOG3864|consen  174 KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP  211 (221)
T ss_pred             HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence            789999999988776632222   35677888887765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.95  E-value=1e-06  Score=74.01  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=84.7

Q ss_pred             ccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286            5 LLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   84 (240)
Q Consensus         5 ~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   84 (240)
                      +.+|++..-.+..+......|+.|.+.+++++.  +..+- .+|+|+.|.+|.++.--..++..++..||+|++|.++.|
T Consensus        25 lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   25 LDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             cchhhhcCCCcccccccccchhhhhhhccceee--cccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            344555554555555556667777766665543  23332 688999999998643344567888899999999999988


Q ss_pred             cCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH--HHHHHHHhcCCcccEEeccCCCCC
Q 026286           85 PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        85 ~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~--~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .+...      ..+.. .+.+++|+.|++++|..+.  .--..+..-+|+|++||-..+...
T Consensus       102 ki~~l------stl~p-l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen  102 KIKDL------STLRP-LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             ccccc------cccch-hhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            65321      11112 2367889999999999654  112344556789999876554433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.94  E-value=6.1e-06  Score=71.18  Aligned_cols=112  Identities=19%  Similarity=0.159  Sum_probs=65.6

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .|.++.|++++|+|+.  +..++ .+++|+.|+||+|. ++  .+..+-..+.|+|+|.|+.|-+         +....+
T Consensus       306 ~Pkir~L~lS~N~i~~--v~nLa-~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~N~i---------E~LSGL  370 (490)
T KOG1259|consen  306 APKLRRLILSQNRIRT--VQNLA-ELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQNKI---------ETLSGL  370 (490)
T ss_pred             ccceeEEeccccceee--ehhhh-hcccceEeecccch-hH--hhhhhHhhhcCEeeeehhhhhH---------hhhhhh
Confidence            4567777777776654  23333 56677777777642 33  2333333456677777764422         111112


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK  149 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~  149 (240)
                      . .+-.|..|++++|+|..-....-+.++|.|++|.|.+++.-...+.
T Consensus       371 ~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  371 R-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             H-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            1 3456778888888876644444455788888888888876644444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=6.1e-06  Score=71.02  Aligned_cols=108  Identities=19%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             CcEEEeeCCCCCHHH-HHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           25 LQTLRLPRSEMSDSI-VAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        25 L~~L~L~~~~itd~~-l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      +.-|.+.+|.|...| +..++..++.++.|+|.+| +|++ .-+.+|.+++|.|+.|+|++|++...-        ..+.
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I--------~~lp  117 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDI--------KSLP  117 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCcc--------ccCc
Confidence            334555666555443 4555666777777777764 4543 455666677777777777766552210        0000


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  141 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C  141 (240)
                      -...+|+.|-|.|..+....+...++..|.++.|.++.+
T Consensus       118 ~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  118 LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            133466777777766666666666666676666666555

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.86  E-value=6.1e-07  Score=83.78  Aligned_cols=123  Identities=18%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             cHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccC
Q 026286           14 DLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS   93 (240)
Q Consensus        14 ~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~   93 (240)
                      +|..-.++..+|++|.|++|.+....+..+. .++.|+.|.+++ ++-|-..+..-...+.||+.+.+++|.+..     
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~-TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-----  236 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSN-TQRTLDNIPTSLDDLHNLRDVDLSENNLPI-----  236 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhccc-ccchhhcCCCchhhhhhhhhccccccCCCc-----
Confidence            3344455667777788877766665555543 556666777766 333322222222334678888887775421     


Q ss_pred             ChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH
Q 026286           94 QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK  149 (240)
Q Consensus        94 ~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~  149 (240)
                          +....-++++|+.|+|++|.||.-.+.  .....+|++|+|+.+..+.+.+.
T Consensus       237 ----vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~a  286 (1255)
T KOG0444|consen  237 ----VPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDA  286 (1255)
T ss_pred             ----chHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHH
Confidence                112223678999999999998864332  23457899999998887755553

>PLN03210 Resistant to P

Probab=97.79  E-value=1.1e-05  Score=82.34  Aligned_cols=107  Identities=18%  Similarity=0.203  Sum_probs=65.6

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      +++|+.|+|++|..... +..-..++++|+.|+|++|.+++.  +... ..+++|+.|.++.+..-           ..+
T Consensus       777 ~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~--LP~~-~~L~sL~~L~Ls~c~~L-----------~~~  841 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLET--LPTG-INLESLESLDLSGCSRL-----------RTF  841 (1153)
T ss_pred             cccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCe--eCCC-CCccccCEEECCCCCcc-----------ccc
Confidence            45677777777632211 222234678888888888765542  1111 14677888887644210           011


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  145 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~  145 (240)
                      ....++|++|+|++|.|+.  +..-+..+++|+.|+|++|.++.
T Consensus       842 p~~~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        842 PDISTNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             cccccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcC
Confidence            1134678888888888763  44445678899999999998873

syringae 6; Provisional

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=1.8e-05  Score=68.19  Aligned_cols=71  Identities=28%  Similarity=0.294  Sum_probs=50.6

Q ss_pred             cHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           14 DLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        14 ~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      ....++..|..++.|+|.+|.|++ ..+..|.+++|.|++|+|+.| .++. .+..+..-.++|++|-|++..+
T Consensus        62 d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   62 DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCCC
Confidence            346678889999999999999887 668888889999999999875 3432 1233322235677777765444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.69  E-value=5.2e-06  Score=80.33  Aligned_cols=122  Identities=22%  Similarity=0.292  Sum_probs=82.0

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC--CCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC--SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c--~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      .+.|+.|.|.+|.+++..+..+. .+++|+.|+|++|  +.+.+..+    +.++.|+.|.|++|.+.        .-..
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~--------~Lp~  424 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLT--------TLPD  424 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhh--------hhhH
Confidence            44677888889999999888887 8899999999996  22333332    34578999999887552        1122


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcC--CCCccccC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF--PNLKVLGP  163 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~--~~L~~L~~  163 (240)
                      .++ +++.|+.|...+|.|..  ...++ ..|+|+++||+.+. +  +...+.+..  |+||.|..
T Consensus       425 tva-~~~~L~tL~ahsN~l~~--fPe~~-~l~qL~~lDlS~N~-L--~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  425 TVA-NLGRLHTLRAHSNQLLS--FPELA-QLPQLKVLDLSCNN-L--SEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             HHH-hhhhhHHHhhcCCceee--chhhh-hcCcceEEecccch-h--hhhhhhhhCCCcccceeec
Confidence            334 78899999988888542  23444 68999999998554 4  222222222  46666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=1.4e-05  Score=68.20  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             chhcHHHHHhC--CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCC
Q 026286           11 ADVDLFPGSAS--AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT   88 (240)
Q Consensus        11 tD~~L~~i~~~--~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~   88 (240)
                      |..+....++.  ..+.+.|++.+|+++|-   .|++++|.|+.|.||- ++|+  .+..+ ..|++|++|.|..|.+  
T Consensus         5 Te~mV~~raK~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSv-NkIs--sL~pl-~rCtrLkElYLRkN~I--   75 (388)
T KOG2123|consen    5 TESMVYIRAKCSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSV-NKIS--SLAPL-QRCTRLKELYLRKNCI--   75 (388)
T ss_pred             HHHHHHHHHHhhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeec-cccc--cchhH-HHHHHHHHHHHHhccc--
Confidence            44444444432  34677888888888873   3556788888888886 3565  34444 4567777777755532  


Q ss_pred             CCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHH---HHHHHhcCCcccEEe
Q 026286           89 ADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEI---VLKILSSCALLEFLD  137 (240)
Q Consensus        89 ~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~---l~~l~~~c~~Le~Ld  137 (240)
                           .+-.-.+-.+++|+|+.|=|.-|. ....|   -..++..+|+|+.||
T Consensus        76 -----~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   76 -----ESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -----ccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence                 233333334466666666666555 11111   224455566666664

>PLN03210 Resistant to P

Probab=97.62  E-value=3.7e-05  Score=78.53  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=73.7

Q ss_pred             HhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286           19 SASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE   97 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~   97 (240)
                      ..++++|+.|.|++| .+..  +.... .+++|+.|+|++|..+..     +....++|+.|.|+.+.+..    +    
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~~----i----  861 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIEE----V----  861 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccc-----ccccccccCEeECCCCCCcc----C----
Confidence            347899999999998 4542  22222 588999999999976542     22334789999997765421    1    


Q ss_pred             HHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286           98 ANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVK  145 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~  145 (240)
                      ...+ ..+++|+.|+|++|+ ++.  +......+++|+.|++++|..++
T Consensus       862 P~si-~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        862 PWWI-EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             hHHH-hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence            1122 378899999999876 654  33334567888888888887663

syringae 6; Provisional

>PLN03150 hypothetical protein; Provisional

Probab=97.55  E-value=9.2e-05  Score=70.98  Aligned_cols=108  Identities=13%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  103 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~  103 (240)
                      .++.|+|++|.++...-..+ ..+++|+.|+|++| .++......+ ..+++|+.|.|+.|.+..       .....+. 
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~LdLs~N~lsg-------~iP~~l~-  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVLDLSYNSFNG-------SIPESLG-  487 (623)
T ss_pred             EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCC-cccCcCChHH-hCCCCCCEEECCCCCCCC-------CCchHHh-
Confidence            37778888887754333333 37888899998885 4554333333 457888888888775521       1111233 


Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      .+++|++|+|++|.++...-..+.....++..+++.+|.
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            788888999888887654333333333455666666544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.54  E-value=0.00079  Score=57.59  Aligned_cols=138  Identities=15%  Similarity=0.081  Sum_probs=90.0

Q ss_pred             HhCCCCCcEEEeeCCCCCHHHHHHH-------H-----hcCccCcEEEecCCCCCCH--HHHHHHHhcCCCCcEEEEeec
Q 026286           19 SASAGSLQTLRLPRSEMSDSIVAQI-------A-----GRLSAVTFLDLSYCSKIGA--PALEAIGKHCKLLVVLCRNMH   84 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~itd~~l~~l-------~-----~~~~~L~~L~Ls~c~~it~--~~l~~l~~~c~~L~~L~L~~~   84 (240)
                      ..+...|++|.|++|++...+=..+       +     ..-|.|++.....|...+.  .-..+..+.-.+|+.+++-.|
T Consensus       116 is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qN  195 (388)
T COG5238         116 ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQN  195 (388)
T ss_pred             HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeec
Confidence            3467899999999997654322222       2     2358899999988643332  223333344379999999888


Q ss_pred             cCCCCCccCChHHHHHH----HhcCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCCCCCChHHHHhc---
Q 026286           85 PLDTADKLSQDDEANAI----ASTMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKFMKGN---  154 (240)
Q Consensus        85 ~~~~~~~~~~d~~~~~i----~~~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~v~~~~~~l~~~---  154 (240)
                      .+       ...++..+    +..+++|+.|+|..|.+|..+-..++.   ..+.|+.|.+..|-.-+-....+.+.   
T Consensus       196 gI-------rpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e  268 (388)
T COG5238         196 GI-------RPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE  268 (388)
T ss_pred             Cc-------CcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence            54       33443333    236799999999999998877665544   45779999999998764333344333   


Q ss_pred             --CCCCccccC
Q 026286          155 --FPNLKVLGP  163 (240)
Q Consensus       155 --~~~L~~L~~  163 (240)
                        .|+|..|..
T Consensus       269 ~~~p~l~~L~~  279 (388)
T COG5238         269 KFVPNLMPLPG  279 (388)
T ss_pred             hcCCCcccccc
Confidence              455554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.50  E-value=9.3e-06  Score=77.08  Aligned_cols=103  Identities=27%  Similarity=0.362  Sum_probs=57.4

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~-~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      .|+.|+|++|++++  +. ..+.|++|+.|+|++|. ++  .+..++. .|+ |..|.+..|-+         ..+..|.
T Consensus       188 ale~LnLshNk~~~--v~-~Lr~l~~LkhLDlsyN~-L~--~vp~l~~~gc~-L~~L~lrnN~l---------~tL~gie  251 (1096)
T KOG1859|consen  188 ALESLNLSHNKFTK--VD-NLRRLPKLKHLDLSYNC-LR--HVPQLSMVGCK-LQLLNLRNNAL---------TTLRGIE  251 (1096)
T ss_pred             Hhhhhccchhhhhh--hH-HHHhcccccccccccch-hc--cccccchhhhh-heeeeecccHH---------HhhhhHH
Confidence            45556666665554  22 33355666666666542 22  1122221 122 55555543321         2233333


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                       ++.+|+.|+|++|-|.+-.-...+..+..|+.|.|.|++.
T Consensus       252 -~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  252 -NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence             7788888999988877665555555667788888888763

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.44  E-value=4e-05  Score=66.24  Aligned_cols=106  Identities=20%  Similarity=0.102  Sum_probs=72.4

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      -...|++|+|++|.|+.  +..-.+-.|.++.|++|+|. |+.  +..+ +.+++|+.|+|+.|-+         .....
T Consensus       282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~-i~~--v~nL-a~L~~L~~LDLS~N~L---------s~~~G  346 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNR-IRT--VQNL-AELPQLQLLDLSGNLL---------AECVG  346 (490)
T ss_pred             hHhhhhhccccccchhh--hhhhhhhccceeEEeccccc-eee--ehhh-hhcccceEeecccchh---------Hhhhh
Confidence            34568889999998865  44455567999999999964 442  2222 3568999999987743         22222


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .-..+-+++.|.|++|.|.+-+-   +.++-.|..||++++..-
T Consensus       347 wh~KLGNIKtL~La~N~iE~LSG---L~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  347 WHLKLGNIKTLKLAQNKIETLSG---LRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             hHhhhcCEeeeehhhhhHhhhhh---hHhhhhheeccccccchh
Confidence            33467889999999998654221   224557899999987755

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.38  E-value=0.00018  Score=39.09  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=17.2

Q ss_pred             CccCcEEEecCCCCCCHHHHHHHHh
Q 026286           47 LSAVTFLDLSYCSKIGAPALEAIGK   71 (240)
Q Consensus        47 ~~~L~~L~Ls~c~~it~~~l~~l~~   71 (240)
                      ||+|+.|+|++|.+||+.++.++++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5667777777777777777766653

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=8.1e-05  Score=63.68  Aligned_cols=116  Identities=22%  Similarity=0.180  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHhc--CccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEE
Q 026286           35 MSDSIVAQIAGR--LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE  112 (240)
Q Consensus        35 itd~~l~~l~~~--~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~  112 (240)
                      +|...+..-++.  +.+.+.||+-+|. +++-   .|.+..|.|+.|.|+.|.+.         .+.. ...|++|++|.
T Consensus         4 LTe~mV~~raK~sdl~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNkIs---------sL~p-l~rCtrLkElY   69 (388)
T KOG2123|consen    4 LTESMVYIRAKCSDLENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNKIS---------SLAP-LQRCTRLKELY   69 (388)
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccCCC-ccHH---HHHHhcccceeEEeeccccc---------cchh-HHHHHHHHHHH
Confidence            344444444422  5688999999984 6763   45667799999999987542         1122 24889999999


Q ss_pred             eeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH----HHHhcCCCCccccCC
Q 026286          113 MAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK----FMKGNFPNLKVLGPF  164 (240)
Q Consensus       113 L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~----~l~~~~~~L~~L~~~  164 (240)
                      |..|.|.+-.-.+-++++|+|+.|.|-.++-....+.    .+.+..|+||+|...
T Consensus        70 LRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   70 LRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             HHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            9999999888888889999999999977665533332    345788999998764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.20  E-value=2e-05  Score=51.87  Aligned_cols=35  Identities=20%  Similarity=-0.000  Sum_probs=14.9

Q ss_pred             ccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286           48 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   84 (240)
Q Consensus        48 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   84 (240)
                      |+|+.|++++| +++.- .....+.+++|+.|.++.|
T Consensus         1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N   35 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNN   35 (61)
T ss_dssp             TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCC
Confidence            45555555554 33321 1112233355555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.14  E-value=3.8e-05  Score=50.57  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      .+++|++|+|++|.|+.-. ...+.++++|++|++++|.
T Consensus        23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            4555666666655544211 1223455566666665553

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.08  E-value=0.00049  Score=42.37  Aligned_cols=36  Identities=25%  Similarity=0.229  Sum_probs=23.8

Q ss_pred             CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286          106 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       106 ~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                      |+|++|+|++|.|++  +...+.+|++|+.|++++|..
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence            467788888887774  444356788888888887753

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.08  E-value=0.00014  Score=64.91  Aligned_cols=62  Identities=15%  Similarity=0.150  Sum_probs=39.0

Q ss_pred             hcCCCCCEEEeeCcccCHHHH-------------------H----HHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCc
Q 026286          103 STMPKLKRLEMAYHVISTEIV-------------------L----KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  159 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l-------------------~----~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~  159 (240)
                      +.+|+|++|+|++|+||.-.-                   .    .+.++..+|+.|+|.++...+....++ +....|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF-~~~~~l~  349 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF-QTLFSLS  349 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc-cccceee
Confidence            466999999999999765211                   1    123556778888888877665454443 3334455


Q ss_pred             cccCCC
Q 026286          160 VLGPFV  165 (240)
Q Consensus       160 ~L~~~~  165 (240)
                      .|..+.
T Consensus       350 ~l~l~~  355 (498)
T KOG4237|consen  350 TLNLLS  355 (498)
T ss_pred             eeehcc
Confidence            555543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.02  E-value=0.00068  Score=36.74  Aligned_cols=24  Identities=21%  Similarity=0.362  Sum_probs=16.9

Q ss_pred             CCCCCEEEeeCcc-cCHHHHHHHHh
Q 026286          105 MPKLKRLEMAYHV-ISTEIVLKILS  128 (240)
Q Consensus       105 ~~~L~~L~L~~~~-it~~~l~~l~~  128 (240)
                      ||+|++|+|++|. ||+.++.++++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            4677777777776 77777776653

>PLN03150 hypothetical protein; Provisional

Probab=96.96  E-value=0.0011  Score=63.60  Aligned_cols=87  Identities=18%  Similarity=0.303  Sum_probs=61.2

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|+.|+|++|.++.. +......+++|+.|+|++| .++......++ .+++|+.|.|+.|.+..       .....
T Consensus       440 ~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~Ls~N~l~g-------~iP~~  509 (623)
T PLN03150        440 KLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILNLNGNSLSG-------RVPAA  509 (623)
T ss_pred             CCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEECcCCcccc-------cCChH
Confidence            689999999999988653 3333458999999999996 56765444554 67999999998876521       11112


Q ss_pred             HHhcCCCCCEEEeeCcc
Q 026286          101 IASTMPKLKRLEMAYHV  117 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~  117 (240)
                      +.....++..+++.+|.
T Consensus       510 l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        510 LGGRLLHRASFNFTDNA  526 (623)
T ss_pred             HhhccccCceEEecCCc
Confidence            33234567788888886

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.94  E-value=0.00027  Score=57.82  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=57.8

Q ss_pred             hcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH-
Q 026286           45 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV-  123 (240)
Q Consensus        45 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l-  123 (240)
                      ..+++|..|.|++| .|+.- -..+....|+|+.|.|..|++..-      ..+..++ .||+|++|.+-+|.++...- 
T Consensus        61 p~l~rL~tLll~nN-rIt~I-~p~L~~~~p~l~~L~LtnNsi~~l------~dl~pLa-~~p~L~~Ltll~Npv~~k~~Y  131 (233)
T KOG1644|consen   61 PHLPRLHTLLLNNN-RITRI-DPDLDTFLPNLKTLILTNNSIQEL------GDLDPLA-SCPKLEYLTLLGNPVEHKKNY  131 (233)
T ss_pred             CCccccceEEecCC-cceee-ccchhhhccccceEEecCcchhhh------hhcchhc-cCCccceeeecCCchhcccCc
Confidence            35677888888774 56642 234555668888888876654211      2233344 78899999988888776542 


Q ss_pred             -HHHHhcCCcccEEeccC
Q 026286          124 -LKILSSCALLEFLDLRG  140 (240)
Q Consensus       124 -~~l~~~c~~Le~LdL~~  140 (240)
                       ..++..+|+|++||.++
T Consensus       132 R~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  132 RLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeEEEEecCcceEeehhh
Confidence             24455678899998865

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.91  E-value=0.00079  Score=41.45  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=24.2

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCC
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG   62 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it   62 (240)
                      ++|++|+|++|.|++  +.....++++|+.|++++| .|+
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N-~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN-PIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence            467788888887775  4553457888888888775 455

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.86  E-value=0.00031  Score=57.42  Aligned_cols=107  Identities=23%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             cCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHH
Q 026286           46 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK  125 (240)
Q Consensus        46 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~  125 (240)
                      -.-+...++|+++...-..    ..-+.++|.+|-++.|++...+        ..+...+|+|+.|.|.+|+|..-+=..
T Consensus        40 ~~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~--------p~L~~~~p~l~~L~LtnNsi~~l~dl~  107 (233)
T KOG1644|consen   40 TLDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRID--------PDLDTFLPNLKTLILTNNSIQELGDLD  107 (233)
T ss_pred             cccccceecccccchhhcc----cCCCccccceEEecCCcceeec--------cchhhhccccceEEecCcchhhhhhcc
Confidence            3566778888885422211    1235689999999988764332        124456799999999999987766555


Q ss_pred             HHhcCCcccEEeccCCCCCCCChHH--HHhcCCCCccccCC
Q 026286          126 ILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPF  164 (240)
Q Consensus       126 l~~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~  164 (240)
                      -+..||+|++|.+-+++.-...+..  +....|+|++|...
T Consensus       108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehh
Confidence            5669999999999888755333331  23566777777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.79  E-value=2.1e-05  Score=62.89  Aligned_cols=114  Identities=20%  Similarity=0.276  Sum_probs=74.6

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      ..+++.|.|++|.++-- -..++ .+.+|+.|+++++ +|+.  +..-...+|.||.|++++|++...     ..++   
T Consensus        32 ~s~ITrLtLSHNKl~~v-ppnia-~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~l-----prgf---   98 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVV-PPNIA-ELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNIL-----PRGF---   98 (264)
T ss_pred             hhhhhhhhcccCceeec-CCcHH-Hhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcC-----cccc---
Confidence            45788889999976541 12233 6788999999884 5553  222234568999999998875321     1111   


Q ss_pred             HhcCCCCCEEEeeCcccCHHH----------HHHH-------------HhcCCcccEEeccCCCCCCCChH
Q 026286          102 ASTMPKLKRLEMAYHVISTEI----------VLKI-------------LSSCALLEFLDLRGCWDVKLDDK  149 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~----------l~~l-------------~~~c~~Le~LdL~~C~~v~~~~~  149 (240)
                       .++|.|+.|+|.+|.++...          +.++             +.++.+|+.|.++.+..+++..+
T Consensus        99 -gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke  168 (264)
T KOG0617|consen   99 -GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE  168 (264)
T ss_pred             -CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH
Confidence             15688888888887765432          2222             24567899999999888866544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.67  E-value=0.0015  Score=64.00  Aligned_cols=13  Identities=23%  Similarity=0.598  Sum_probs=6.0

Q ss_pred             CCcEEEeeCCCCC
Q 026286           24 SLQTLRLPRSEMS   36 (240)
Q Consensus        24 ~L~~L~L~~~~it   36 (240)
                      +|+.|.|.+|+++
T Consensus       223 ~L~~L~L~~N~Lt  235 (788)
T PRK15387        223 HITTLVIPDNNLT  235 (788)
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.64  E-value=0.00038  Score=64.59  Aligned_cols=52  Identities=23%  Similarity=0.257  Sum_probs=31.9

Q ss_pred             CChHHHHHHHhcC----CCCCEEEeeCcccCHHHHH---HHHhcCCcccEEeccCCCCC
Q 026286           93 SQDDEANAIASTM----PKLKRLEMAYHVISTEIVL---KILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        93 ~~d~~~~~i~~~~----~~L~~L~L~~~~it~~~l~---~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +.+.++..+...+    ++|+++.++.|.|+..+..   ..+..|++++.|.++.+...
T Consensus       245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3445555554443    3557777777777765544   33456677777777766654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.62  E-value=0.00096  Score=65.25  Aligned_cols=36  Identities=14%  Similarity=0.027  Sum_probs=23.1

Q ss_pred             CCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          107 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       107 ~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +|+.|+|++|.|+.  +..-+.++++|+.|+|++|..-
T Consensus       423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCC
Confidence            45566666666552  3333446788899999887644

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.57  E-value=0.00031  Score=67.11  Aligned_cols=85  Identities=20%  Similarity=0.070  Sum_probs=58.7

Q ss_pred             HhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH
Q 026286           44 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV  123 (240)
Q Consensus        44 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l  123 (240)
                      .+-+|.|++|||++| +++.-  . ..+.|++|+.|+|+.|.+....         .+...--+|..|+|++|.++.  +
T Consensus       183 Lqll~ale~LnLshN-k~~~v--~-~Lr~l~~LkhLDlsyN~L~~vp---------~l~~~gc~L~~L~lrnN~l~t--L  247 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHN-KFTKV--D-NLRRLPKLKHLDLSYNCLRHVP---------QLSMVGCKLQLLNLRNNALTT--L  247 (1096)
T ss_pred             HHHHHHhhhhccchh-hhhhh--H-HHHhcccccccccccchhcccc---------ccchhhhhheeeeecccHHHh--h
Confidence            344788999999995 66653  2 3467899999999988664221         111111239999999998764  2


Q ss_pred             HHHHhcCCcccEEeccCCCCC
Q 026286          124 LKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       124 ~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .. +.++++|+.|||+.+-..
T Consensus       248 ~g-ie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  248 RG-IENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             hh-HHhhhhhhccchhHhhhh
Confidence            22 337789999999987654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.54  E-value=0.002  Score=64.11  Aligned_cols=110  Identities=22%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             HhCCCCCcEEEeeCCCC-CHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286           19 SASAGSLQTLRLPRSEM-SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE   97 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~i-td~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~   97 (240)
                      +..|+.|++|-+..+.- -..+-..+...+|.|+.|+|++|..++  .+......+-+||.|+++...+.         .
T Consensus       541 ~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~---------~  609 (889)
T KOG4658|consen  541 SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGIS---------H  609 (889)
T ss_pred             CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCcc---------c
Confidence            34566788887777742 222334445577888888888765433  22222223456777777644321         1


Q ss_pred             HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC
Q 026286           98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  140 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~  140 (240)
                      +..-...+.+|.+|++.++..-. .+..++..+++|++|.+.+
T Consensus       610 LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  610 LPSGLGNLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cchHHHHHHhhheeccccccccc-cccchhhhcccccEEEeec
Confidence            11111244455566655544100 0123333455566665544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.44  E-value=0.0025  Score=33.70  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=17.2

Q ss_pred             CCCCCEEEeeCcccCHHHHHHHH
Q 026286          105 MPKLKRLEMAYHVISTEIVLKIL  127 (240)
Q Consensus       105 ~~~L~~L~L~~~~it~~~l~~l~  127 (240)
                      +++|++|+|++|.|++.++.++.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            47889999999999998888775

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.43  E-value=0.00074  Score=60.57  Aligned_cols=108  Identities=21%  Similarity=0.226  Sum_probs=64.6

Q ss_pred             EeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCc----------------c
Q 026286           29 RLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADK----------------L   92 (240)
Q Consensus        29 ~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~----------------~   92 (240)
                      .++++.++-  +..+...+++|..|+|+++ .+.+ ....++ ....|+.|+++.|+|.--..                .
T Consensus       418 ~lsnn~isf--v~~~l~~l~kLt~L~L~NN-~Ln~-LP~e~~-~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq  492 (565)
T KOG0472|consen  418 VLSNNKISF--VPLELSQLQKLTFLDLSNN-LLND-LPEEMG-SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ  492 (565)
T ss_pred             HhhcCcccc--chHHHHhhhcceeeecccc-hhhh-cchhhh-hhhhhheecccccccccchHHHhhHHHHHHHHhcccc
Confidence            344444433  3445556777888888764 2322 122222 22447777777665532110                1


Q ss_pred             CChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           93 SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        93 ~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +..-....+ ..|.+|+.|+|.+|.|.  .+..++.+|.+|++|+|.|++--
T Consensus       493 i~~vd~~~l-~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  493 IGSVDPSGL-KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ccccChHHh-hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence            111111122 36789999999999864  46778889999999999998754

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.42  E-value=0.00065  Score=63.04  Aligned_cols=160  Identities=17%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             ccccccccchhcHHHHHhC---CCCCcEEEeeCCCCCHHHHHHHHhcCc----cCcEEEecCCCCCCHHHHHHHHhc---
Q 026286            3 LCLLDFLCADVDLFPGSAS---AGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALEAIGKH---   72 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~---~~~L~~L~L~~~~itd~~l~~l~~~~~----~L~~L~Ls~c~~it~~~l~~l~~~---   72 (240)
                      |.|.+|...+.+...+++.   .++|..|+|++|++.+.+...+...++    .|+.|.+..|. ++..+...++..   
T Consensus        92 L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~~L~~  170 (478)
T KOG4308|consen   92 LSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAAVLEK  170 (478)
T ss_pred             hhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHHHHhc
Confidence            4556666677666666654   556777778887777777777665543    35666666663 455443333221   


Q ss_pred             CCCCcEEEEeeccCCCCCc-------------------------cCChHHHHHHHhcC---CC-CCEEEeeCcccCHHHH
Q 026286           73 CKLLVVLCRNMHPLDTADK-------------------------LSQDDEANAIASTM---PK-LKRLEMAYHVISTEIV  123 (240)
Q Consensus        73 c~~L~~L~L~~~~~~~~~~-------------------------~~~d~~~~~i~~~~---~~-L~~L~L~~~~it~~~l  123 (240)
                      +..|+.+++..|.+...|.                         .++......++..+   +. ++.|++..|.+.+.++
T Consensus       171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~  250 (478)
T KOG4308|consen  171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGV  250 (478)
T ss_pred             ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHH
Confidence            4556666665554321111                         12223333332222   22 5556677777776666


Q ss_pred             HHHHhcCC----cccEEeccCCCCCCCChHHHH---hcCCCCccccC
Q 026286          124 LKILSSCA----LLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGP  163 (240)
Q Consensus       124 ~~l~~~c~----~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~  163 (240)
                      ..+...++    .+++++++.|.........+.   ..|++++.+..
T Consensus       251 ~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l  297 (478)
T KOG4308|consen  251 EKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSL  297 (478)
T ss_pred             HHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhc
Confidence            65554433    447777777776643333222   33444444444

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=96.33  E-value=0.0049  Score=57.20  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=23.2

Q ss_pred             cHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCC
Q 026286           14 DLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        14 ~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      +|..+..+-|.+..++|++|++-+ .++..+++..|+|..|+|++|
T Consensus       209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            344444455555555555554332 445555555555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.21  E-value=0.0017  Score=59.23  Aligned_cols=111  Identities=26%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+.+|+.|.+..|.|..  +..+...+++|+.|+|+++ +|+.  +..+. .++.|+.|.+..|.+....         .
T Consensus        93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~--i~~l~-~l~~L~~L~l~~N~i~~~~---------~  157 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN-KITK--LEGLS-TLTLLKELNLSGNLISDIS---------G  157 (414)
T ss_pred             cccceeeeeccccchhh--cccchhhhhcchheecccc-cccc--ccchh-hccchhhheeccCcchhcc---------C
Confidence            45688888888887754  4442457899999999985 5664  23332 2355999999877652211         1


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD  148 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~  148 (240)
                      + ..+++|+.+++++|+++...-.. +..++.|+.+.+.++.......
T Consensus       158 ~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~  203 (414)
T KOG0531|consen  158 L-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG  203 (414)
T ss_pred             C-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc
Confidence            1 13788999999999977644422 4678888888888877664443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.16  E-value=0.0034  Score=33.14  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=9.9

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIA   44 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~   44 (240)
                      ++|++|+|++|.|++.|+..++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHhC
Confidence            4455555555555555544443

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.81  E-value=0.011  Score=32.60  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             CCCCEEEeeCcccCHHHHHHHHhcC
Q 026286          106 PKLKRLEMAYHVISTEIVLKILSSC  130 (240)
Q Consensus       106 ~~L~~L~L~~~~it~~~l~~l~~~c  130 (240)
                      ++|++|+|++|.|+++|+.++.+.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            5789999999999999988887644

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.58  E-value=0.0058  Score=54.96  Aligned_cols=127  Identities=22%  Similarity=0.182  Sum_probs=65.1

Q ss_pred             cchhcHHHH---HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc-
Q 026286           10 CADVDLFPG---SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP-   85 (240)
Q Consensus        10 ~tD~~L~~i---~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~-   85 (240)
                      +++-.+..+   ...+++|+.|.++.|.+++  +.......++|+.|+++++ +++.  +........+|++|.++.|+ 
T Consensus       147 l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l~~~~N~~  221 (394)
T COG4886         147 LSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSALEELDLSNNSI  221 (394)
T ss_pred             ccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCC-cccc--CchhhhhhhhhhhhhhcCCcc
Confidence            344444443   3467777777777777766  3333325677777777774 3442  22211222346666665542 


Q ss_pred             CCCCC----------ccCChHHH---HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           86 LDTAD----------KLSQDDEA---NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        86 ~~~~~----------~~~~d~~~---~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .....          ..+.....   ......++.|+.|++++|.|+.-..   +.....|+.|++++....
T Consensus       222 ~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         222 IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc---ccccCccCEEeccCcccc
Confidence            11000          00001100   1223355667777777777665333   345667777777776554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.58  E-value=0.0062  Score=54.81  Aligned_cols=104  Identities=26%  Similarity=0.274  Sum_probs=58.3

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcC-ccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRL-SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~-~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      +.++.|.+.++.+++  +....... ++|+.|+++++ .+..  +..-...+|+|+.|.++.|++.         .+...
T Consensus       116 ~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N-~i~~--l~~~~~~l~~L~~L~l~~N~l~---------~l~~~  181 (394)
T COG4886         116 TNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDN-KIES--LPSPLRNLPNLKNLDLSFNDLS---------DLPKL  181 (394)
T ss_pred             cceeEEecCCccccc--Cccccccchhhccccccccc-chhh--hhhhhhccccccccccCCchhh---------hhhhh
Confidence            567778887776665  33443344 37888888774 3432  2122356688888888766431         11111


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      ....++|+.|.+++|.++.-.  ..+.....|++|.++++.
T Consensus       182 ~~~~~~L~~L~ls~N~i~~l~--~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         182 LSNLSNLNNLDLSGNKISDLP--PEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhhhhhhhheeccCCccccCc--hhhhhhhhhhhhhhcCCc
Confidence            115677777777777755422  211223346666666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.48  E-value=0.018  Score=56.50  Aligned_cols=55  Identities=9%  Similarity=0.114  Sum_probs=29.9

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      ++|+.|+|++|.|+.  +....  +++|+.|+|++| +++. ....+   .++|+.|.|+.|.+
T Consensus       199 ~~L~~L~Ls~N~Lts--LP~~l--~~nL~~L~Ls~N-~Lts-LP~~l---~~~L~~L~Ls~N~L  253 (754)
T PRK15370        199 EQITTLILDNNELKS--LPENL--QGNIKTLYANSN-QLTS-IPATL---PDTIQEMELSINRI  253 (754)
T ss_pred             cCCcEEEecCCCCCc--CChhh--ccCCCEEECCCC-cccc-CChhh---hccccEEECcCCcc
Confidence            467778887776653  22211  357777777775 3442 11112   14566666665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=95.18  E-value=0.021  Score=56.99  Aligned_cols=110  Identities=23%  Similarity=0.227  Sum_probs=67.9

Q ss_pred             HhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286           19 SASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE   97 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~   97 (240)
                      ..+.|.|+.|+|++| .++.  ++.....+-+||.|+|++ +.|+  .+..-.+.++.|.+|++..+..        -..
T Consensus       567 f~~m~~LrVLDLs~~~~l~~--LP~~I~~Li~LryL~L~~-t~I~--~LP~~l~~Lk~L~~Lnl~~~~~--------l~~  633 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSK--LPSSIGELVHLRYLDLSD-TGIS--HLPSGLGNLKKLIYLNLEVTGR--------LES  633 (889)
T ss_pred             HhhCcceEEEECCCCCccCc--CChHHhhhhhhhcccccC-CCcc--ccchHHHHHHhhheeccccccc--------ccc
Confidence            447899999999987 4433  445555788999999998 5676  1222223346788888854321        011


Q ss_pred             HHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCC
Q 026286           98 ANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGC  141 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C  141 (240)
                      ...+...+++||+|.+.+.. -.+..+..-+.++.+|+.|....+
T Consensus       634 ~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  634 IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            13455568999999998776 222333333456666666655433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.17  E-value=0.0021  Score=58.55  Aligned_cols=110  Identities=25%  Similarity=0.275  Sum_probs=69.3

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+..++.+.+..+.|..  +..-...+.+|+.|++..+ +|..  +..+..++++|+.|.++.|.+..         +..
T Consensus        70 ~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~N~I~~---------i~~  135 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSFNKITK---------LEG  135 (414)
T ss_pred             HhHhHHhhccchhhhhh--hhcccccccceeeeecccc-chhh--cccchhhhhcchheecccccccc---------ccc
Confidence            34555666655555544  1222235788899999874 4442  33323567999999998775521         112


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD  148 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~  148 (240)
                      +. .++.|+.|++++|.|+...-   +..++.|+.++++++..+....
T Consensus       136 l~-~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  136 LS-TLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hh-hccchhhheeccCcchhccC---CccchhhhcccCCcchhhhhhh
Confidence            22 55669999999999776332   1236888999999888775444

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.15  E-value=0.031  Score=30.75  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=13.6

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhc
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGR   46 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~   46 (240)
                      ++|++|+|++|.|++.|...+++.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            355566666666666655555543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=94.85  E-value=0.013  Score=52.69  Aligned_cols=93  Identities=20%  Similarity=0.087  Sum_probs=59.4

Q ss_pred             HHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCccc
Q 026286           39 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI  118 (240)
Q Consensus        39 ~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~i  118 (240)
                      +-..-.+++|+|+.|+|++| +|+.-.-.++ .....++.|.|..|.+.        ..-..+...+..|+.|+|++|+|
T Consensus       265 cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aF-e~~a~l~eL~L~~N~l~--------~v~~~~f~~ls~L~tL~L~~N~i  334 (498)
T KOG4237|consen  265 CPAKCFKKLPNLRKLNLSNN-KITRIEDGAF-EGAAELQELYLTRNKLE--------FVSSGMFQGLSGLKTLSLYDNQI  334 (498)
T ss_pred             ChHHHHhhcccceEeccCCC-ccchhhhhhh-cchhhhhhhhcCcchHH--------HHHHHhhhccccceeeeecCCee
Confidence            33444667899999999984 6765322232 23366888888766441        11122445778999999999998


Q ss_pred             CHHHHHHHHhcCCcccEEeccCCC
Q 026286          119 STEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus       119 t~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      |.-+-.+ .+....|..|.|-+++
T Consensus       335 t~~~~~a-F~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  335 TTVAPGA-FQTLFSLSTLNLLSNP  357 (498)
T ss_pred             EEEeccc-ccccceeeeeehccCc
Confidence            7643332 2345678888886654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.43  E-value=0.002  Score=51.76  Aligned_cols=85  Identities=27%  Similarity=0.250  Sum_probs=56.2

Q ss_pred             cCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHH
Q 026286           46 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK  125 (240)
Q Consensus        46 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~  125 (240)
                      ...+++.|.||++ +++.- ...|+ .+++|+.|++..|.+         +....-.+++|+|++|+++-|++..  +..
T Consensus        31 ~~s~ITrLtLSHN-Kl~~v-ppnia-~l~nlevln~~nnqi---------e~lp~~issl~klr~lnvgmnrl~~--lpr   96 (264)
T KOG0617|consen   31 NMSNITRLTLSHN-KLTVV-PPNIA-ELKNLEVLNLSNNQI---------EELPTSISSLPKLRILNVGMNRLNI--LPR   96 (264)
T ss_pred             chhhhhhhhcccC-ceeec-CCcHH-Hhhhhhhhhcccchh---------hhcChhhhhchhhhheecchhhhhc--Ccc
Confidence            4677888999984 56531 12232 347899999976643         2222223489999999999887432  222


Q ss_pred             HHhcCCcccEEeccCCCCC
Q 026286          126 ILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       126 l~~~c~~Le~LdL~~C~~v  144 (240)
                      -...+|.|+.|||+.+..-
T Consensus        97 gfgs~p~levldltynnl~  115 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLN  115 (264)
T ss_pred             ccCCCchhhhhhccccccc
Confidence            2456899999999887643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=94.14  E-value=0.014  Score=45.21  Aligned_cols=110  Identities=18%  Similarity=0.199  Sum_probs=63.1

Q ss_pred             CCcEEEeeCCCCCH--HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           24 SLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        24 ~L~~L~L~~~~itd--~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .+..+.|++|.+-.  ..+..+ .+...|+..+|++|. +. +..+.+....|.++.|++..|.+       ++ ....+
T Consensus        28 E~h~ldLssc~lm~i~davy~l-~~~~el~~i~ls~N~-fk-~fp~kft~kf~t~t~lNl~~nei-------sd-vPeE~   96 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYML-SKGYELTKISLSDNG-FK-KFPKKFTIKFPTATTLNLANNEI-------SD-VPEEL   96 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHH-hCCceEEEEecccch-hh-hCCHHHhhccchhhhhhcchhhh-------hh-chHHH
Confidence            45666777775431  222333 356777777887753 21 22345555667788888865533       11 12224


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD  147 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~  147 (240)
                      | ++|.|+.|++++|.+... ...++ .+.+|-.|+..++....++
T Consensus        97 A-am~aLr~lNl~~N~l~~~-p~vi~-~L~~l~~Lds~~na~~eid  139 (177)
T KOG4579|consen   97 A-AMPALRSLNLRFNPLNAE-PRVIA-PLIKLDMLDSPENARAEID  139 (177)
T ss_pred             h-hhHHhhhcccccCccccc-hHHHH-HHHhHHHhcCCCCccccCc
Confidence            4 788888888888886532 22233 3566777777666555433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.96  E-value=0.028  Score=43.70  Aligned_cols=96  Identities=22%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             HHHHHHHhcC---ccCcEEEecCCCCC-CHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEe
Q 026286           38 SIVAQIAGRL---SAVTFLDLSYCSKI-GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEM  113 (240)
Q Consensus        38 ~~l~~l~~~~---~~L~~L~Ls~c~~i-t~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L  113 (240)
                      .|+...+++|   .-+..|+|+.|... -...+-.+. .-..|+...|+.|.+..        -...+....|.++.|+|
T Consensus        14 rgV~evVercedakE~h~ldLssc~lm~i~davy~l~-~~~el~~i~ls~N~fk~--------fp~kft~kf~t~t~lNl   84 (177)
T KOG4579|consen   14 RGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLS-KGYELTKISLSDNGFKK--------FPKKFTIKFPTATTLNL   84 (177)
T ss_pred             hhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHh-CCceEEEEecccchhhh--------CCHHHhhccchhhhhhc
Confidence            4566666665   35888999998532 122333333 23678888887765421        11234446678999999


Q ss_pred             eCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          114 AYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       114 ~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ++|.|++--..  +..+|.|+.|+++.+...
T Consensus        85 ~~neisdvPeE--~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   85 ANNEISDVPEE--LAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             chhhhhhchHH--HhhhHHhhhcccccCccc
Confidence            99999875554  457999999999999877

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.87  E-value=0.084  Score=51.88  Aligned_cols=103  Identities=12%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|+.|.+++|.++.  +..-.  +++|+.|+|++| +++. ....+   .++|+.|.|+.|.+..    +.. .   +
T Consensus       324 ~~sL~~L~Ls~N~Lt~--LP~~l--~~sL~~L~Ls~N-~L~~-LP~~l---p~~L~~LdLs~N~Lt~----LP~-~---l  386 (754)
T PRK15370        324 PPGLKTLEAGENALTS--LPASL--PPELQVLDVSKN-QITV-LPETL---PPTITTLDVSRNALTN----LPE-N---L  386 (754)
T ss_pred             cccceeccccCCcccc--CChhh--cCcccEEECCCC-CCCc-CChhh---cCCcCEEECCCCcCCC----CCH-h---H
Confidence            3689999999997764  22211  478999999996 4552 11122   3689999998776532    111 1   1


Q ss_pred             HhcCCCCCEEEeeCcccCH--HHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~--~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .   +.|+.|++++|+++.  ..+..+...+|.+..|+|.++...
T Consensus       387 ~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        387 P---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             H---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            1   257888899888763  345555666788899999887754

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=93.77  E-value=0.12  Score=48.35  Aligned_cols=94  Identities=27%  Similarity=0.279  Sum_probs=63.1

Q ss_pred             HHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCc--ccCHHHHHHHHhcCCcccEEeccCCC
Q 026286           65 ALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus        65 ~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~--~it~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      .++++....|.+..+.|+.|++.      .-+.+..|+...|+|+.|+|++|  .+....-..=+ +...|+.|-+.|++
T Consensus       209 ~L~~~~~n~p~i~sl~lsnNrL~------~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GNP  281 (585)
T KOG3763|consen  209 VLKHIEENFPEILSLSLSNNRLY------HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGNP  281 (585)
T ss_pred             HHHHhhcCCcceeeeecccchhh------chhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCCc
Confidence            45667777888888888777653      23566678888899999999988  34432222212 34668888888887


Q ss_pred             CCCC-ChH-----HHHhcCCCCccccCCC
Q 026286          143 DVKL-DDK-----FMKGNFPNLKVLGPFV  165 (240)
Q Consensus       143 ~v~~-~~~-----~l~~~~~~L~~L~~~~  165 (240)
                      ..+. ...     .+++.+|+|..|....
T Consensus       282 lc~tf~~~s~yv~~i~~~FPKL~~LDG~e  310 (585)
T KOG3763|consen  282 LCTTFSDRSEYVSAIRELFPKLLRLDGVE  310 (585)
T ss_pred             cccchhhhHHHHHHHHHhcchheeecCcc
Confidence            7632 111     4567899998887643

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.60  E-value=0.049  Score=49.59  Aligned_cols=34  Identities=15%  Similarity=0.345  Sum_probs=21.1

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcC-ccCcEEEecCCCCC
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRL-SAVTFLDLSYCSKI   61 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~-~~L~~L~Ls~c~~i   61 (240)
                      |+++++|.+++|.|+.  +.    .+ ++|++|.+++|..+
T Consensus        51 ~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nL   85 (426)
T PRK15386         51 ARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNL   85 (426)
T ss_pred             hcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCc
Confidence            6777777777775543  11    23 35777777776654

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=93.07  E-value=0.16  Score=44.59  Aligned_cols=89  Identities=19%  Similarity=0.183  Sum_probs=59.5

Q ss_pred             HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCC---CcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCE
Q 026286           37 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL---LVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKR  110 (240)
Q Consensus        37 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~---L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~  110 (240)
                      +..+..+-..=|+|+..+|++...|+...+..+...+++   .+.+.+.       +...++..+.+++   +.++.|+.
T Consensus       187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla-------~tr~~d~vA~a~a~ml~~n~sl~s  259 (353)
T KOG3735|consen  187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLA-------NTRSSDPVAFAIAEMLKENKSLTS  259 (353)
T ss_pred             HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhh-------cccCCchhHHHHHHHHhhcchhhh
Confidence            445556655568888888888777887777766655443   3333332       2233445555544   45588999


Q ss_pred             EEeeCcccCHHHHHHHHhcCCc
Q 026286          111 LEMAYHVISTEIVLKILSSCAL  132 (240)
Q Consensus       111 L~L~~~~it~~~l~~l~~~c~~  132 (240)
                      |++.+|.||..++.+++..++.
T Consensus       260 lnvesnFItg~gi~a~~~al~~  281 (353)
T KOG3735|consen  260 LNVESNFITGLGIMALLRALQS  281 (353)
T ss_pred             eeccccccccHHHHHHHHHHhc
Confidence            9999999999999988866544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.02  E-value=0.049  Score=49.25  Aligned_cols=90  Identities=22%  Similarity=0.283  Sum_probs=57.9

Q ss_pred             HHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH--------HHHHHH--------------HhcCCC
Q 026286           18 GSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA--------PALEAI--------------GKHCKL   75 (240)
Q Consensus        18 i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~--------~~l~~l--------------~~~c~~   75 (240)
                      +....++|..|+|++|-+.+  +..-...+..|+.|+|+.+. +.-        ..++.+              .+.+.+
T Consensus       430 ~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n  506 (565)
T KOG0472|consen  430 ELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN  506 (565)
T ss_pred             HHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccc-cccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence            34467889999999986554  22212235559999998752 211        111111              134567


Q ss_pred             CcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccC
Q 026286           76 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  119 (240)
Q Consensus        76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it  119 (240)
                      |+.|++..|.+         +.+..+..+|.+|++|.|.||.|.
T Consensus       507 L~tLDL~nNdl---------q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  507 LTTLDLQNNDL---------QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cceeccCCCch---------hhCChhhccccceeEEEecCCccC
Confidence            88888876643         344456669999999999999976

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=91.88  E-value=0.27  Score=43.31  Aligned_cols=98  Identities=14%  Similarity=0.112  Sum_probs=71.9

Q ss_pred             cchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHH---HHHHHhcCCCCcEEEEe
Q 026286           10 CADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPA---LEAIGKHCKLLVVLCRN   82 (240)
Q Consensus        10 ~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~---l~~l~~~c~~L~~L~L~   82 (240)
                      ..++.+..+-..-++|+.++|.+. +|+...+..++..   ....+...+.+ +..++..   +..+.+.|+.|++|++.
T Consensus       185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnve  263 (353)
T KOG3735|consen  185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVE  263 (353)
T ss_pred             hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecc
Confidence            357788889889999999999998 8988777766654   56677777776 4555543   44556788999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcC---CCCCEEEeeC
Q 026286           83 MHPLDTADKLSQDDEANAIASTM---PKLKRLEMAY  115 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L~~  115 (240)
                      .|       .|+..++.++.+.+   ..|..|...+
T Consensus       264 sn-------FItg~gi~a~~~al~~n~tl~el~~dn  292 (353)
T KOG3735|consen  264 SN-------FITGLGIMALLRALQSNKSLTELKNDN  292 (353)
T ss_pred             cc-------ccccHHHHHHHHHHhccchhhHhhhhh
Confidence            77       46778888887666   3455554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.02  E-value=0.17  Score=24.33  Aligned_cols=13  Identities=23%  Similarity=0.669  Sum_probs=5.6

Q ss_pred             CCCCEEEeeCccc
Q 026286          106 PKLKRLEMAYHVI  118 (240)
Q Consensus       106 ~~L~~L~L~~~~i  118 (240)
                      ++|+.|+|++|++
T Consensus         1 ~~L~~L~l~~n~L   13 (17)
T PF13504_consen    1 PNLRTLDLSNNRL   13 (17)
T ss_dssp             TT-SEEEETSS--
T ss_pred             CccCEEECCCCCC
Confidence            3455555555554

...

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.04  E-value=0.51  Score=25.40  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=18.2

Q ss_pred             CCCEEEeeCcccCHH-HHHHHHhcCC
Q 026286          107 KLKRLEMAYHVISTE-IVLKILSSCA  131 (240)
Q Consensus       107 ~L~~L~L~~~~it~~-~l~~l~~~c~  131 (240)
                      +||.|.|....+.++ .+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            477888888776554 6778887776

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>PRK15386 type III secretion protein GogB; Provisional

Probab=85.90  E-value=1.1  Score=41.11  Aligned_cols=95  Identities=15%  Similarity=0.205  Sum_probs=47.9

Q ss_pred             CCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           23 GSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        23 ~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      ++|++|.+.+| .++.  +....  .++|+.|.|++|..++     .+   -++|+.|.+.++...            .+
T Consensus        72 ~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~n~~~------------~L  127 (426)
T PRK15386         72 NELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----GL---PESVRSLEIKGSATD------------SI  127 (426)
T ss_pred             CCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----cc---ccccceEEeCCCCCc------------cc
Confidence            35777777766 3321  11111  2467777777765443     11   245666666433110            01


Q ss_pred             HhcC-CCCCEEEeeCcc-cCHHHHHHHHhcC-CcccEEeccCCCCCC
Q 026286          102 ASTM-PKLKRLEMAYHV-ISTEIVLKILSSC-ALLEFLDLRGCWDVK  145 (240)
Q Consensus       102 ~~~~-~~L~~L~L~~~~-it~~~l~~l~~~c-~~Le~LdL~~C~~v~  145 (240)
                      . .+ ++|+.|.+.+++ .....+..   .+ +.|++|.+++|..+.
T Consensus       128 ~-~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        128 K-NVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII  170 (426)
T ss_pred             c-cCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc
Confidence            1 22 456666664332 21111111   12 579999999999774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=84.68  E-value=0.11  Score=48.97  Aligned_cols=37  Identities=22%  Similarity=0.111  Sum_probs=24.2

Q ss_pred             CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          106 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       106 ~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      -.|..|++++|+|+.  +..-..++++|++|-|.+++.-
T Consensus       211 LpLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  211 LPLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             CceeeeecccCceee--cchhhhhhhhheeeeeccCCCC
Confidence            456777777777654  3333456777777777777655

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.48  E-value=0.56  Score=23.97  Aligned_cols=13  Identities=15%  Similarity=0.363  Sum_probs=7.5

Q ss_pred             CCCEEEeeCcccC
Q 026286          107 KLKRLEMAYHVIS  119 (240)
Q Consensus       107 ~L~~L~L~~~~it  119 (240)
                      +|++|+|++|.|+
T Consensus         1 ~L~~Ldls~n~l~   13 (22)
T PF00560_consen    1 NLEYLDLSGNNLT   13 (22)
T ss_dssp             TESEEEETSSEES
T ss_pred             CccEEECCCCcCE
Confidence            3566666666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 24  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 83
            LQ L L    +SD IV  +A + S +  L+LS CS     AL+ +   C  L  L    
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN--- 174

Query: 84  HPLDTADKLSQDDEANAIASTMPKLKRLEMA--YHVISTEIVLKILSSCALLEFLDLRGC 141
             L      ++     A+A     + +L ++     +    +  ++  C  L  LDL   
Sbjct: 175 --LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS 232

Query: 142 WDVKLDDKFMK--GNFPNLKVL 161
             V L +   +       L+ L
Sbjct: 233 --VMLKNDCFQEFFQLNYLQHL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 24  SLQTLRLP--RSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 81
           ++  L L   R  +  S ++ +  R   +  LDLS    +     +        L  L  
Sbjct: 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLS- 253

Query: 82  NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE 134
               L     +   +    +   +P LK L++ + ++    +  +  +   L+
Sbjct: 254 ----LSRCYDII-PETLLELGE-IPTLKTLQV-FGIVPDGTLQLLKEALPHLQ 299

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 35/148 (23%), Positives = 56/148 (37%), Gaps = 11/148 (7%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 78
           S+S   L+ +RL R  ++D  +  IA        L LS C       L AI   C+ L  
Sbjct: 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160

Query: 79  LCRNMHPLDTADKLSQDDEA-NAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEF 135
           L      L  +D         +    T   L  L ++     +S   + ++++ C  L+ 
Sbjct: 161 LD-----LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 136 LDLRGCWDVKLDD-KFMKGNFPNLKVLG 162
           L L     V L+    +    P L+ LG
Sbjct: 216 LKLNRA--VPLEKLATLLQRAPQLEELG 241

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 32/199 (16%), Positives = 65/199 (32%), Gaps = 44/199 (22%)

Query: 3   LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEM---------SDSIVAQIAGRLSAVTFL 53
           L +LD++  D  L   +++   L+ LR+  SE          ++  +  ++     +  +
Sbjct: 319 LWVLDYIE-DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377

Query: 54  DLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADKLSQDDEANAIASTMPKLK 109
            L +C ++   AL  I ++   +            P     +   D    AI      L+
Sbjct: 378 -LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-DIGFGAIVEHCKDLR 435

Query: 110 RLEMAYHV------------------------ISTEIVLKILSSCALLEFLDLRGCWDVK 145
           RL ++  +                         S   +  +LS C  L  L++R C    
Sbjct: 436 RLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP--F 493

Query: 146 LDDKFMK--GNFPNLKVLG 162
            D   +        ++ L 
Sbjct: 494 GDKALLANASKLETMRSLW 512

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 19/131 (14%)

Query: 24  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL---- 79
            L+ L L    ++D +   I      +  L +++        +  +   C  L  L    
Sbjct: 433 DLRRLSL-SGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRD 490

Query: 80  CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL--EFLD 137
           C              D    A AS +  ++ L M+   +S      +      L  E +D
Sbjct: 491 CPFG-----------DKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539

Query: 138 LRGCWDVKLDD 148
            RG  D + + 
Sbjct: 540 ERGAPDSRPES 550

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 4/126 (3%)

Query: 24  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 83
            L TL L  + +    + ++  +   +  L +     I    LE +   CK L  L    
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFP 347

Query: 84  HPLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 141
                 +      +    +++   PKL+ +      ++   ++ I  +   +    L   
Sbjct: 348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407

Query: 142 WDVKLD 147
                D
Sbjct: 408 EPKAPD 413

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 20/145 (13%)

Query: 24  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP----ALEAIGKHCKLLVVL 79
           +L++L+L R+      +A +  R   +  L     +    P     L      CK L  L
Sbjct: 212 NLKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL 270

Query: 80  --CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLD 137
               +                 A+ S   +L  L ++Y  + +  ++K+L  C  L+ L 
Sbjct: 271 SGFWDAV----------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320

Query: 138 LRGCW-DVKLDDKFMKGNFPNLKVL 161
           +     D  L  + +     +L+ L
Sbjct: 321 VLDYIEDAGL--EVLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 24/170 (14%), Positives = 45/170 (26%), Gaps = 34/170 (20%)

Query: 3   LCLLDFLCADVDLFPGSAS--------AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLD 54
             +  F+  D D    S S               ++          A +  R   V  ++
Sbjct: 15  EHVFSFIQLDKDR--NSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVE 72

Query: 55  LSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA 114
           L          L   G    +   +                    A++S+   L+ + + 
Sbjct: 73  LKGKPHFADFNLVPDGWGGYVYPWI-------------------EAMSSSYTWLEEIRLK 113

Query: 115 YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK---GNFPNLKVL 161
             V++ + +  I  S    + L L  C         +        NLK L
Sbjct: 114 RMVVTDDCLELIAKSFKNFKVLVLSSCE--GFSTDGLAAIAATCRNLKEL 161

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 19  SASAGSLQTLRLPRSEMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 77
           S +   L+++   R  +SD  + ++A  R   +  L L  CS      L +I  HC+ + 
Sbjct: 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167

Query: 78  VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY---HVISTEIVLKILSSCALLE 134
            L          D        + +A     L+ L         IS + +  I  +C  L 
Sbjct: 168 TLLMEESSFSEKD----GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 135 FLDLRGCWDVKLDDKFMKGNFPNLKVLG 162
            + +       L+         NL+   
Sbjct: 224 SVKVGDF--EILELVGFFKAAANLEEFC 249

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 22/173 (12%), Positives = 50/173 (28%), Gaps = 21/173 (12%)

Query: 3   LCLLDFLCA---DVDLFPGSASAGSLQTLRLPRSEMSDSI--------VAQIAGRLSAVT 51
           L  +    +   +  L        +L   RL   +  + I        V  +      + 
Sbjct: 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439

Query: 52  FLDLSY-CSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKR 110
                     +    L  IG++   +  +               D+     +   P L++
Sbjct: 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES-------DEGLMEFSRGCPNLQK 492

Query: 111 LEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNLKVL 161
           LEM     S   +   ++    L +L ++G          M     + N++++
Sbjct: 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.9 bits (124), Expect = 6e-08
 Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 25/159 (15%)

Query: 24  SLQTLRL---PRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 80
           SL+ L       +++S   +  IA    ++  + +     +          + +      
Sbjct: 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252

Query: 81  RNMHPLDTADKLS---------------QDDEANAIASTMPKLKRLEMAYHVISTEIVLK 125
            N         ++                 +E   +     ++++L++ Y ++ TE    
Sbjct: 253 LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT 312

Query: 126 ILSSCALLEFLDLRGCWDVKLDDKFMKG---NFPNLKVL 161
           ++  C  LE L+ R      + D+ ++        LK L
Sbjct: 313 LIQKCPNLEVLETRNV----IGDRGLEVLAQYCKQLKRL 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 28/194 (14%), Positives = 52/194 (26%), Gaps = 35/194 (18%)

Query: 3   LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG 62
            C                     +  RL  S M  + +  +    + +  LDL Y     
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 63  AP-----------------------ALEAIGKHCKLLVVL----CRNMHPLDTADKLSQD 95
                                     LE + ++CK L  L      +   ++  + L   
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ 367

Query: 96  DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW------DVKLDDK 149
               A+A    +L+ + +    I+ E +  I +    L    L          D+ LD+ 
Sbjct: 368 RGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427

Query: 150 FMKG--NFPNLKVL 161
                     L+  
Sbjct: 428 VRSLLIGCKKLRRF 441

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 24  SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 83
            +Q+L +   E+SD+  A++   L     + L  C  +     + I      L V    +
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDI---SSALRV-NPAL 58

Query: 84  HPLDTADKLS----QDDEANAIASTM----PKLKRLEMAYHVISTEIVLKI---LSSCAL 132
             L+    L      D   + +   +     K+++L +    ++      +   L +   
Sbjct: 59  AELN----LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 133 LEFLDLRGCWDVKLDDKFMK 152
           L+ L L       L D  ++
Sbjct: 115 LQELHLSDN---LLGDAGLQ 131

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 33/139 (23%)

Query: 25  LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 84
           +Q +    S +       + G L  V  + L  C  I    LE + +   L         
Sbjct: 63  IQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENL--------- 112

Query: 85  PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW-- 142
                                  +  +E+      T+  +  L     L++L L      
Sbjct: 113 --------------------QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGV 152

Query: 143 -DVKLDDKFMKGNFPNLKV 160
            + +   +  K + P+L++
Sbjct: 153 KEKEKIVQAFKTSLPSLEL 171

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 35/238 (14%), Positives = 70/238 (29%), Gaps = 56/238 (23%)

Query: 3   LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS--YCSK 60
           L +L  L   +D    ++ +     ++L    +   +   +  +      L L     +K
Sbjct: 199 LEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 61  IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 120
                  A    CK+L+          T  K       + +++       L+     ++ 
Sbjct: 258 A----WNAFNLSCKILLT---------TRFK----QVTDFLSAATTTHISLDHHSMTLTP 300

Query: 121 EIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP-NLKVLGPFVMDYYEINDWDDCSD 179
           + V  +L         DL          + +    P  L ++   + D   +  WD+   
Sbjct: 301 DEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESIRD--GLATWDN--- 346

Query: 180 YSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELR--FYD-GI-EEDAGI 233
                    W+ +     + D    I E   +    LE  E R  F    +    A I
Sbjct: 347 ---------WKHV-----NCDKLTTIIESSLNV---LEPAEYRKMFDRLSVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.66
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.61
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.55
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.38
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.25
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.2
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.19
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.19
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.02
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.88
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.85
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.84
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.81
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.78
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.76
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.76
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.74
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.71
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.7
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.68
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.68
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.68
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.67
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.65
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.62
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.61
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.6
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.6
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.58
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.58
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.55
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.54
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.54
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.54
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.54
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.54
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.52
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.51
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.48
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.48
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.46
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.45
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.45
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.44
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.44
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.42
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.41
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.4
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.4
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.39
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.38
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.38
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.37
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.36
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.33
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.27
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.03
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.02
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.02
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.02
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.99
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.91
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.9
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.9
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.89
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.81
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.67
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.67
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.3
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.25
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.37
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.21
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	90.67
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	89.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	88.44
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	83.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.76
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	81.51

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=3.6e-17  Score=144.97  Aligned_cols=132  Identities=15%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             ccccccccchhcHHHHHhCC------------CCCcEEEeeCCCCCHHHHHHHH---hcCccCcEEEecCCCCCCHHHHH
Q 026286            3 LCLLDFLCADVDLFPGSASA------------GSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALE   67 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~------------~~L~~L~L~~~~itd~~l~~l~---~~~~~L~~L~Ls~c~~it~~~l~   67 (240)
                      |.|.++.+++.+...++...            ++|++|+|++|.+++.++..++   ..+++|+.|+|++| .++..++.
T Consensus       127 L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~  205 (386)
T 2ca6_A          127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIE  205 (386)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHH
T ss_pred             EECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHH
Confidence            45555555555444443322            5666666666666554444322   24566666666664 45555544


Q ss_pred             HHHh----cCCCCcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHHhc-----CCcccE
Q 026286           68 AIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS-----CALLEF  135 (240)
Q Consensus        68 ~l~~----~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~~~-----c~~Le~  135 (240)
                      ++..    .+++|+.|.|+.|.+       ++.++..++   ..+++|++|+|++|.|++.+...+...     +++|++
T Consensus       206 ~l~~~~l~~~~~L~~L~Ls~n~l-------~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~  278 (386)
T 2ca6_A          206 HLLLEGLAYCQELKVLDLQDNTF-------THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  278 (386)
T ss_dssp             HHHHTTGGGCTTCCEEECCSSCC-------HHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             HHHHHHhhcCCCccEEECcCCCC-------CcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence            3332    456666666655432       333333222   344556666666666655544433321     555666


Q ss_pred             EeccCCC
Q 026286          136 LDLRGCW  142 (240)
Q Consensus       136 LdL~~C~  142 (240)
                      |+|++|.
T Consensus       279 L~L~~n~  285 (386)
T 2ca6_A          279 LRLQYNE  285 (386)
T ss_dssp             EECCSSC
T ss_pred             EECcCCc
Confidence            6665554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=8.3e-17  Score=142.63  Aligned_cols=134  Identities=17%  Similarity=0.085  Sum_probs=83.2

Q ss_pred             ccccccccchhcHHHHHh---CCCCCcEEEeeCCCCCHHHHHHHHh----cCccCcEEEecCCCCCCHHHHHHH---Hhc
Q 026286            3 LCLLDFLCADVDLFPGSA---SAGSLQTLRLPRSEMSDSIVAQIAG----RLSAVTFLDLSYCSKIGAPALEAI---GKH   72 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~---~~~~L~~L~L~~~~itd~~l~~l~~----~~~~L~~L~Ls~c~~it~~~l~~l---~~~   72 (240)
                      |.+.++.+++.++..++.   .+++|++|+|++|.|++.++..++.    .+++|+.|+|++| .++..+...+   ...
T Consensus       164 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~  242 (386)
T 2ca6_A          164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKS  242 (386)
T ss_dssp             EECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGG
T ss_pred             EECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHcc
Confidence            456666666666665443   5677777777777777766555544    5677777777775 4665444333   245


Q ss_pred             CCCCcEEEEeeccCCCCCccCChHHHHHHHhc-----CCCCCEEEeeCcccCHHHHHHHH----hcCCcccEEeccCCCC
Q 026286           73 CKLLVVLCRNMHPLDTADKLSQDDEANAIAST-----MPKLKRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCWD  143 (240)
Q Consensus        73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~-----~~~L~~L~L~~~~it~~~l~~l~----~~c~~Le~LdL~~C~~  143 (240)
                      +++|+.|.|+.|.       +++.++.+++..     +++|++|+|++|.|+..++..+.    .++|+|++|+|++|..
T Consensus       243 ~~~L~~L~L~~n~-------i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          243 WPNLRELGLNDCL-------LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             CTTCCEEECTTCC-------CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCcCEEECCCCC-------CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            6777777776553       345555544432     57777777777777775444332    3467777777777765


Q ss_pred             C
Q 026286          144 V  144 (240)
Q Consensus       144 v  144 (240)
                      .
T Consensus       316 ~  316 (386)
T 2ca6_A          316 S  316 (386)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=1.6e-16  Score=137.56  Aligned_cols=155  Identities=21%  Similarity=0.169  Sum_probs=123.0

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   81 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L   81 (240)
                      .|.+.++.+++.++..+..++++|++|+|++|.+++.....++ .+++|++|+|++|..+++.++..+...|++|+.|.+
T Consensus        97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l  175 (336)
T 2ast_B           97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  175 (336)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcC
Confidence            3677788888887888888899999999999999888777776 589999999999877888888887788999999999


Q ss_pred             eeccCCCCCccCChHHHHHHHhcCC-CCCEEEeeCc--ccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCC
Q 026286           82 NMHPLDTADKLSQDDEANAIASTMP-KLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  158 (240)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~i~~~~~-~L~~L~L~~~--~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L  158 (240)
                      +.+.      .+++.++..+...+| +|++|+|++|  .+++.++..++.+||+|+.|+|++|..++.........+++|
T Consensus       176 ~~~~------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          176 SWCF------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             CCCT------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             CCCC------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            7651      235566667777888 9999999999  588888888888899999999999986622211122566788


Q ss_pred             ccccC
Q 026286          159 KVLGP  163 (240)
Q Consensus       159 ~~L~~  163 (240)
                      +.|..
T Consensus       250 ~~L~l  254 (336)
T 2ast_B          250 QHLSL  254 (336)
T ss_dssp             CEEEC
T ss_pred             CEeeC
Confidence            87776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.66  E-value=4.7e-16  Score=134.66  Aligned_cols=153  Identities=19%  Similarity=0.259  Sum_probs=126.1

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCC-CCcEE
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK-LLVVL   79 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~-~L~~L   79 (240)
                      .|.+.++.+++.....++. +++|++|+|++| .+++.++..++..+++|+.|+|++|..+++.++..+...+| +|+.|
T Consensus       122 ~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             EEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            3678888889888888874 899999999999 89999899988899999999999986799888888778899 99999


Q ss_pred             EEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCC
Q 026286           80 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFP  156 (240)
Q Consensus        80 ~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~  156 (240)
                      .++.+..     .+++..+..+...+|+|++|+|++|. +++.++..+ .++++|++|+|++|..+  ++..+  ...++
T Consensus       201 ~l~~~~~-----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~--~~~~~~~l~~~~  272 (336)
T 2ast_B          201 NLSGYRK-----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDI--IPETLLELGEIP  272 (336)
T ss_dssp             ECCSCGG-----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTC--CGGGGGGGGGCT
T ss_pred             EeCCCcc-----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCC--CHHHHHHHhcCC
Confidence            9986632     24567777777789999999999999 888777655 47899999999999866  44422  25688


Q ss_pred             CCccccC
Q 026286          157 NLKVLGP  163 (240)
Q Consensus       157 ~L~~L~~  163 (240)
                      +|+.|..
T Consensus       273 ~L~~L~l  279 (336)
T 2ast_B          273 TLKTLQV  279 (336)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEec
Confidence            8888877

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.61  E-value=1.4e-14  Score=134.42  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=110.2

Q ss_pred             cchhcHHHHHhCCCCCcEEEeeC----------C-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 026286           10 CADVDLFPGSASAGSLQTLRLPR----------S-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   78 (240)
Q Consensus        10 ~tD~~L~~i~~~~~~L~~L~L~~----------~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~   78 (240)
                      +++.++..++..|++|++|+|.+          | .+++.++..++..|++|+.|+++ |+.+++.++..+++.||+|+.
T Consensus       329 ~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~  407 (592)
T 3ogk_B          329 IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIGTYLKNLCD  407 (592)
T ss_dssp             GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCE
T ss_pred             cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHHhhCCCCcE
Confidence            45666666666777777777773          4 67777777777777777777773 456777777777777777777


Q ss_pred             EEEe----eccCCCC------------------------CccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcC
Q 026286           79 LCRN----MHPLDTA------------------------DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC  130 (240)
Q Consensus        79 L~L~----~~~~~~~------------------------~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c  130 (240)
                      |+++    ++.+...                        ...+++.++..++..+++|++|+|++|.+++.++..++.+|
T Consensus       408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  487 (592)
T 3ogk_B          408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGC  487 (592)
T ss_dssp             EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCC
T ss_pred             EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcC
Confidence            7774    2222210                        00257777888887899999999999999999999999999


Q ss_pred             CcccEEeccCCCCCCCChHH---HHhcCCCCccccC
Q 026286          131 ALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGP  163 (240)
Q Consensus       131 ~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~  163 (240)
                      ++|++|+|++|. +  ++..   +...+++|+.|..
T Consensus       488 ~~L~~L~l~~n~-l--~~~~~~~~~~~l~~L~~L~l  520 (592)
T 3ogk_B          488 PNLQKLEMRGCC-F--SERAIAAAVTKLPSLRYLWV  520 (592)
T ss_dssp             TTCCEEEEESCC-C--BHHHHHHHHHHCSSCCEEEE
T ss_pred             cccCeeeccCCC-C--cHHHHHHHHHhcCccCeeEC
Confidence            999999999998 5  4432   3356888888876

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.60  E-value=7e-15  Score=136.43  Aligned_cols=144  Identities=15%  Similarity=0.140  Sum_probs=98.6

Q ss_pred             cchhcHHHHHhCCCCCcEEEee----CCCCCH----HHHHHHHhcCccCcEEEecCCC-CCCHHHHHHHHhcCCCCcEEE
Q 026286           10 CADVDLFPGSASAGSLQTLRLP----RSEMSD----SIVAQIAGRLSAVTFLDLSYCS-KIGAPALEAIGKHCKLLVVLC   80 (240)
Q Consensus        10 ~tD~~L~~i~~~~~~L~~L~L~----~~~itd----~~l~~l~~~~~~L~~L~Ls~c~-~it~~~l~~l~~~c~~L~~L~   80 (240)
                      +++.++..++..+++|++|+|.    .+.+++    .++..++..|++|+.|+|++|. .+++.++..+++.||+|+.|.
T Consensus       390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~  469 (592)
T 3ogk_B          390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML  469 (592)
T ss_dssp             CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred             ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence            4555555555555555555554    224443    3555555556666666665443 356666666666677777777


Q ss_pred             EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh-HHHHhcCCCCc
Q 026286           81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLK  159 (240)
Q Consensus        81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~-~~l~~~~~~L~  159 (240)
                      ++.|       .+++.++..++..+++|++|+|++|.|++.++..++.++++|++|+|++|. ++..+ ..+...+|.++
T Consensus       470 L~~n-------~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~  541 (592)
T 3ogk_B          470 LGYV-------GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWN  541 (592)
T ss_dssp             ECSC-------CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEE
T ss_pred             ccCC-------CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcE
Confidence            7655       357788888888999999999999999999999999999999999999999 53222 23445666655


Q ss_pred             cc
Q 026286          160 VL  161 (240)
Q Consensus       160 ~L  161 (240)
                      +.
T Consensus       542 ~~  543 (592)
T 3ogk_B          542 IE  543 (592)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.60  E-value=6.8e-15  Score=136.42  Aligned_cols=143  Identities=22%  Similarity=0.231  Sum_probs=79.8

Q ss_pred             cchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEec-----CCCCCC----HHHHHHHHhcCCCCcEEE
Q 026286           10 CADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS-----YCSKIG----APALEAIGKHCKLLVVLC   80 (240)
Q Consensus        10 ~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls-----~c~~it----~~~l~~l~~~c~~L~~L~   80 (240)
                      +++.++..++..|++|++|.+..+.+++.++..++..+|+|+.|+|+     +|+.++    +.++.++.+.|++|+.|.
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence            34444444444444444444433344444444444444445555544     334444    344444444444444444


Q ss_pred             EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH---HhcCCC
Q 026286           81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM---KGNFPN  157 (240)
Q Consensus        81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l---~~~~~~  157 (240)
                      ++.        .+++.++..++..+++|++|+|++|.+++.++..++.+|++|+.|+|++|..   ++..+   ...+++
T Consensus       439 L~~--------~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~---~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          439 LSG--------LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF---GDKALLANASKLET  507 (594)
T ss_dssp             CCS--------SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC---CHHHHHHTGGGGGG
T ss_pred             ecC--------cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC---cHHHHHHHHHhCCC
Confidence            421        3456666667666777888888777787777777777788888888887774   22222   244566


Q ss_pred             CccccC
Q 026286          158 LKVLGP  163 (240)
Q Consensus       158 L~~L~~  163 (240)
                      |+.|..
T Consensus       508 L~~L~l  513 (594)
T 2p1m_B          508 MRSLWM  513 (594)
T ss_dssp             SSEEEE
T ss_pred             CCEEee
Confidence            666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=7.9e-15  Score=136.00  Aligned_cols=145  Identities=18%  Similarity=0.187  Sum_probs=123.9

Q ss_pred             cccccchhcHHHHHhCCCCCcEEEee-----CC-CCC----HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCC
Q 026286            6 LDFLCADVDLFPGSASAGSLQTLRLP-----RS-EMS----DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL   75 (240)
Q Consensus         6 ~~~~~tD~~L~~i~~~~~~L~~L~L~-----~~-~it----d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~   75 (240)
                      ....+++.++..++..+++|++|+|.     +| .++    +.++..++..|++|+.|+|++  .+++.++..+++.+++
T Consensus       380 ~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~  457 (594)
T 2p1m_B          380 FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK  457 (594)
T ss_dssp             EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT
T ss_pred             hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh
Confidence            33457889999999899999999999     44 788    889999999999999999976  6999999999999999


Q ss_pred             CcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh-HHHHhc
Q 026286           76 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGN  154 (240)
Q Consensus        76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~-~~l~~~  154 (240)
                      |+.|.|+.|.       +++.++..++..+++|++|+|++|.+++.++..++.+|++|+.|+|++|... ..+ ..+...
T Consensus       458 L~~L~L~~~~-------i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~~  529 (594)
T 2p1m_B          458 MEMLSVAFAG-------DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS-FGACKLLGQK  529 (594)
T ss_dssp             CCEEEEESCC-------SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB-HHHHHHHHHH
T ss_pred             ccEeeccCCC-------CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC-HHHHHHHHHh
Confidence            9999998773       4788888898899999999999999999999999989999999999999863 111 123466


Q ss_pred             CCCCcc
Q 026286          155 FPNLKV  160 (240)
Q Consensus       155 ~~~L~~  160 (240)
                      +|++++
T Consensus       530 lp~l~i  535 (594)
T 2p1m_B          530 MPKLNV  535 (594)
T ss_dssp             CTTEEE
T ss_pred             CCCCEE
Confidence            777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.55  E-value=6.7e-15  Score=117.34  Aligned_cols=103  Identities=13%  Similarity=0.156  Sum_probs=68.1

Q ss_pred             cCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc---CCCCCEEEeeCcc-cCHHHHH
Q 026286           49 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHV-ISTEIVL  124 (240)
Q Consensus        49 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~---~~~L~~L~L~~~~-it~~~l~  124 (240)
                      +|+.|+|++|. ||+.++..+ ..|++|+.|.|+.+.      .++|.++..|+..   +++|++|+|++|. ||+.|+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCH------YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCT------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCC------ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            46666666654 666666665 356666666665442      2566666666642   4678888888886 8888888


Q ss_pred             HHHhcCCcccEEeccCCCCCCCChH---HHHhcCCCCcc
Q 026286          125 KILSSCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKV  160 (240)
Q Consensus       125 ~l~~~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~  160 (240)
                      .+. +||+|++|+|++|..++..+.   .+++..|++++
T Consensus       134 ~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          134 ALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             HHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            775 688888888888888843332   33466777664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.52  E-value=3.2e-14  Score=113.41  Aligned_cols=106  Identities=17%  Similarity=0.100  Sum_probs=88.9

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhc---CCCCcEEEEeeccCCCCCccCChHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      ..+|++|+|++|.|++.|+..+. .|++|+.|+|++|..||+.++..|++.   |++|+.|+|+.|+      .+++.++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~------~ITD~Gl  132 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG------NVTDKGI  132 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT------TCCHHHH
T ss_pred             CceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC------cCCHHHH
Confidence            34799999999999999998884 899999999999999999999999873   6789999997653      4789999


Q ss_pred             HHHHhcCCCCCEEEeeCcc-cCHHHH--HHHHhcCCcccE
Q 026286           99 NAIASTMPKLKRLEMAYHV-ISTEIV--LKILSSCALLEF  135 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~-it~~~l--~~l~~~c~~Le~  135 (240)
                      .+++ .+++|++|+|++|. ||+.++  ..+.+.+|+++.
T Consensus       133 ~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          133 IALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             HHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            9887 68999999999998 998764  455667888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.49  E-value=4.3e-13  Score=107.59  Aligned_cols=124  Identities=12%  Similarity=0.088  Sum_probs=103.2

Q ss_pred             hhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEeec
Q 026286           12 DVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMH   84 (240)
Q Consensus        12 D~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~   84 (240)
                      .+++..+...+++|++|+|++| .|++.|+..++..   +++|++|+|++| .+++.+..++++   ..++|+.|.|+.|
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            4466777778999999999999 9999998888754   689999999996 699988776655   4578999999877


Q ss_pred             cCCCCCccCChHHHHHHHhcC---CCCCEEEe--eCcccCHHHHHHH---HhcCCcccEEeccCCCC
Q 026286           85 PLDTADKLSQDDEANAIASTM---PKLKRLEM--AYHVISTEIVLKI---LSSCALLEFLDLRGCWD  143 (240)
Q Consensus        85 ~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L--~~~~it~~~l~~l---~~~c~~Le~LdL~~C~~  143 (240)
                             .+++.++.+++..+   ++|++|+|  ++|.|++.++..+   ++.++.|++|+|++|..
T Consensus       104 -------~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          104 -------FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             -------CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             -------cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence                   45889988887665   78999999  8899999986655   45678999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.48  E-value=1.5e-13  Score=121.88  Aligned_cols=132  Identities=12%  Similarity=0.065  Sum_probs=84.9

Q ss_pred             ccccccccchhcHHHHHhC----CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh----cCC
Q 026286            3 LCLLDFLCADVDLFPGSAS----AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK----HCK   74 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~----~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~----~c~   74 (240)
                      |+|.++.+++.....++..    +++|++|+|++|.|++.++..++..+++|+.|+|++| .+++.++..++.    .++
T Consensus        77 L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~  155 (372)
T 3un9_A           77 LNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQC  155 (372)
T ss_dssp             EECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTC
T ss_pred             EEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCC
Confidence            5666677776666555443    3577777777777777777777777777777777775 577766665543    356


Q ss_pred             CCcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHH---hcCCcccEEeccCCC
Q 026286           75 LLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCW  142 (240)
Q Consensus        75 ~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~---~~c~~Le~LdL~~C~  142 (240)
                      +|+.|.|+.|.       +++.++..++   ..+++|++|+|++|.|++.++..+.   ..+++|+.|+|++|.
T Consensus       156 ~L~~L~Ls~n~-------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          156 QITTLRLSNNP-------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             CCCEEECCSSC-------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             ccceeeCCCCC-------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence            77777776663       3444444443   3456677777777777666654443   345667777777664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=9.5e-14  Score=123.23  Aligned_cols=134  Identities=16%  Similarity=0.068  Sum_probs=112.9

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhc----CccCcEEEecCCCCCCHHHHHHHH---hcCC
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEAIG---KHCK   74 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~----~~~L~~L~Ls~c~~it~~~l~~l~---~~c~   74 (240)
                      .|+|.++.+++.++..++..+++|++|+|++|.|++.++..++..    +++|+.|+|++| .+++.++..++   ..++
T Consensus       105 ~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~  183 (372)
T 3un9_A          105 EVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNT  183 (372)
T ss_dssp             EEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCS
T ss_pred             EEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCC
Confidence            478889999999999999888999999999999999998888653    588999999997 68888777665   4678


Q ss_pred             CCcEEEEeeccCCCCCccCChHHHHHHHh---cCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCC
Q 026286           75 LLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWD  143 (240)
Q Consensus        75 ~L~~L~L~~~~~~~~~~~~~d~~~~~i~~---~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~  143 (240)
                      +|+.|+|+.|.       +++.++..++.   .+++|++|+|++|.|++.++..++.   .++.|++|+|++|..
T Consensus       184 ~L~~L~Ls~N~-------l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          184 SVTHLSLLHTG-------LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             SCCEEECTTSS-------CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             CcCEEeCCCCC-------CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            99999998774       46777766653   4589999999999999988776654   679999999999973

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.38  E-value=3.3e-12  Score=114.84  Aligned_cols=133  Identities=16%  Similarity=0.127  Sum_probs=90.5

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHH---HhcCccCcEEEecCCCCCCHHHHHHHHhcCC----
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAIGKHCK----   74 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l---~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~----   74 (240)
                      .|++....+++..+..+...+++|++|+|++|++++.++..+   ...+++|++|+|++| .+++.++..+.+.++    
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~   85 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSC   85 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTC
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCC
Confidence            366777778888888777788889999998888887654444   445788888888885 578877777777776    


Q ss_pred             CCcEEEEeeccCCCCCccCChHHHHH---HHhcCCCCCEEEeeCcccCHHHHHHHHhc----CCcccEEeccCCC
Q 026286           75 LLVVLCRNMHPLDTADKLSQDDEANA---IASTMPKLKRLEMAYHVISTEIVLKILSS----CALLEFLDLRGCW  142 (240)
Q Consensus        75 ~L~~L~L~~~~~~~~~~~~~d~~~~~---i~~~~~~L~~L~L~~~~it~~~l~~l~~~----c~~Le~LdL~~C~  142 (240)
                      +|++|.++.|.+       ++.++..   ....+++|++|+|++|.|++.++..+...    .++|++|+|++|.
T Consensus        86 ~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           86 KIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             CCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             ceeEEEccCCCC-------CHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence            688888876644       3332222   22355667777777776666665554432    3356666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.32  E-value=1.1e-11  Score=111.29  Aligned_cols=39  Identities=18%  Similarity=0.171  Sum_probs=23.8

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhc----CCcccEEeccCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSS----CALLEFLDLRGCW  142 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~----c~~Le~LdL~~C~  142 (240)
                      .+++|++|+|++|.|++.++..+...    +++|++|+|++|.
T Consensus       339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            45666666666666666665555432    4566666666663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.25  E-value=1.1e-12  Score=100.80  Aligned_cols=132  Identities=18%  Similarity=0.193  Sum_probs=98.2

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ...++|++|++++|.+++..+......+++|+.|++++| .++.-   .....+++|+.|.++.|.+..       . ..
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~-------~-~~   81 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSG-------G-LE   81 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCS-------C-TH
T ss_pred             CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccc-------h-HH
Confidence            345789999999998874445555567999999999997 56653   333567999999998886532       1 23


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP  163 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~  163 (240)
                      .+...+++|++|+|++|.|+.......+.++++|++|++++|........  .....+++|+.|..
T Consensus        82 ~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           82 VLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             HHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            34447999999999999998865555677899999999999976544431  23477899988865

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.21  E-value=7e-11  Score=94.57  Aligned_cols=113  Identities=11%  Similarity=0.081  Sum_probs=93.9

Q ss_pred             ccccccc-ccchhcHHHHHh---CCCCCcEEEeeCCCCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHhc--
Q 026286            2 ALCLLDF-LCADVDLFPGSA---SAGSLQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKH--   72 (240)
Q Consensus         2 ~l~~~~~-~~tD~~L~~i~~---~~~~L~~L~L~~~~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~~--   72 (240)
                      .|.|.++ .+++++...++.   .+++|++|+|++|.|++.|...++..   .++|++|+|++| .|++.++.++++.  
T Consensus        40 ~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~  118 (185)
T 1io0_A           40 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQ  118 (185)
T ss_dssp             EEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGG
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHH
Confidence            3778888 899998888765   47899999999999999998777654   689999999996 6999998877654  


Q ss_pred             -CCCCcEEEE--eeccCCCCCccCChHHHHHHHhc---CCCCCEEEeeCcccCHHH
Q 026286           73 -CKLLVVLCR--NMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHVISTEI  122 (240)
Q Consensus        73 -c~~L~~L~L--~~~~~~~~~~~~~d~~~~~i~~~---~~~L~~L~L~~~~it~~~  122 (240)
                       +++|+.|.|  +.|       .+++.++.+++..   .++|++|+|++|.|+..+
T Consensus       119 ~n~~L~~L~L~~~~N-------~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          119 SNTSLIELRIDNQSQ-------PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             GCSSCCEEECCCCSS-------CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             hCCCceEEEecCCCC-------CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence             578999999  666       4578887777644   489999999999998876

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.20  E-value=3.8e-12  Score=97.69  Aligned_cols=127  Identities=17%  Similarity=0.136  Sum_probs=94.7

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   81 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L   81 (240)
                      .|.+.++.+++..+......+++|+.|+|++|.++..   .....+++|+.|+|++| .++.. +..+...+++|+.|.+
T Consensus        21 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           21 ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             EEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEEC
T ss_pred             EEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEEC
Confidence            3667777777555655556889999999999988764   33457899999999996 46653 4455566899999999


Q ss_pred             eeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH--HHHHhcCCcccEEeccC
Q 026286           82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRG  140 (240)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l--~~l~~~c~~Le~LdL~~  140 (240)
                      +.|.+       +.-........+++|++|++++|.++....  ...+..+|+|++|+++.
T Consensus        96 s~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           96 SGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            87754       332222334589999999999999876433  24667899999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.19  E-value=3.7e-12  Score=99.68  Aligned_cols=133  Identities=18%  Similarity=0.220  Sum_probs=98.0

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ...++|++|+|++|.+++..+......+++|+.|+|++|. ++.-   .....+++|+.|.++.|.+...        ..
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~~--------~~   88 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFGG--------LD   88 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCSC--------CC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCchH--------HH
Confidence            3457899999999988744455555689999999999974 6643   3335679999999998865321        12


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccCC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPF  164 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~  164 (240)
                      .+...+++|++|+|++|.|+.......+.++++|++|+|++|........  .....+++|+.|...
T Consensus        89 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             HHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             HHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence            34446999999999999988743334456899999999999976644441  234678888888773

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.19  E-value=3.9e-11  Score=105.37  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=16.0

Q ss_pred             CCCEEEeeCcccCHHHH---HHHHhcCC-cccEEeccCCC
Q 026286          107 KLKRLEMAYHVISTEIV---LKILSSCA-LLEFLDLRGCW  142 (240)
Q Consensus       107 ~L~~L~L~~~~it~~~l---~~l~~~c~-~Le~LdL~~C~  142 (240)
                      +|++|+|++|.|+..+.   ...+..++ +|++|+|++|.
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  207 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL  207 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence            55555555555433222   22223332 55555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.19  E-value=5.4e-11  Score=104.43  Aligned_cols=155  Identities=14%  Similarity=0.066  Sum_probs=103.6

Q ss_pred             cccccccccchhcHHHHH---hCCC-CCcEEEeeCCCCCHHHHHHHHh---c-CccCcEEEecCCCCCCHHHHHHHH---
Q 026286            2 ALCLLDFLCADVDLFPGS---ASAG-SLQTLRLPRSEMSDSIVAQIAG---R-LSAVTFLDLSYCSKIGAPALEAIG---   70 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~---~~~~-~L~~L~L~~~~itd~~l~~l~~---~-~~~L~~L~Ls~c~~it~~~l~~l~---   70 (240)
                      .|+|.++.+++.....++   .+++ +|++|+|++|.|++.+...++.   . +++|++|+|++| .++......++   
T Consensus        26 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l  104 (362)
T 3goz_A           26 SLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTL  104 (362)
T ss_dssp             EEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHH
T ss_pred             EEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHH
Confidence            467888888888774333   3566 8999999999887655544443   3 389999999996 46654444333   


Q ss_pred             hcC-CCCcEEEEeeccCCCCCccCChHHHHHHH---hc-CCCCCEEEeeCcccCHHHHHHH---HhcCC-cccEEeccCC
Q 026286           71 KHC-KLLVVLCRNMHPLDTADKLSQDDEANAIA---ST-MPKLKRLEMAYHVISTEIVLKI---LSSCA-LLEFLDLRGC  141 (240)
Q Consensus        71 ~~c-~~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~-~~~L~~L~L~~~~it~~~l~~l---~~~c~-~Le~LdL~~C  141 (240)
                      +.+ ++|+.|.++.|.+       +..+...++   .. .++|++|+|++|.|++.++..+   +..++ +|++|+|++|
T Consensus       105 ~~~~~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          105 AAIPFTITVLDLGWNDF-------SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HTSCTTCCEEECCSSCG-------GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HhCCCCccEEECcCCcC-------CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            334 7999999987754       233333333   23 4699999999999887555444   44555 9999999999


Q ss_pred             CCCCCChHHHH---hcC-CCCccccCC
Q 026286          142 WDVKLDDKFMK---GNF-PNLKVLGPF  164 (240)
Q Consensus       142 ~~v~~~~~~l~---~~~-~~L~~L~~~  164 (240)
                      .........+.   ..+ ++|+.|...
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            75433333221   334 478877763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.17  E-value=2.2e-12  Score=100.96  Aligned_cols=131  Identities=18%  Similarity=0.077  Sum_probs=97.7

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   81 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L   81 (240)
                      .|.+.++.+++..+......+++|+.|+|++|.|+..   .....+++|+.|+|++| .++.. +..+...+++|+.|.+
T Consensus        28 ~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           28 ELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             EEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEEC
T ss_pred             EEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEec
Confidence            3667777777656655556789999999999988763   33447899999999996 46653 4455566899999999


Q ss_pred             eeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHH--HHHHhcCCcccEEeccCCCCC
Q 026286           82 NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l--~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +.|.+...       ........+++|++|+|++|.++....  ...+..+|+|++|++++|...
T Consensus       103 s~N~l~~~-------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          103 SGNKLKDI-------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             BSSSCCSS-------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             cCCccCcc-------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            98865321       111223478999999999999775432  246778999999999999765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=99.17  E-value=3.1e-10  Score=91.89  Aligned_cols=124  Identities=7%  Similarity=0.078  Sum_probs=100.4

Q ss_pred             chhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEee
Q 026286           11 ADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNM   83 (240)
Q Consensus        11 tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~   83 (240)
                      -++.+..+..+-++|++|+|+++ .|.+.|+..+++.   .+.|+.|+|++| .|++.+..+|+.   .-+.|+.|.|+.
T Consensus        29 v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~  107 (197)
T 1pgv_A           29 VESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVES  107 (197)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCC
Confidence            35678888888899999999986 9999998888765   578999999996 699988776664   347899999987


Q ss_pred             ccCCCCCccCChHHHHHHHhcC---CCCCEEEeeCc---ccCHHHHHHH---HhcCCcccEEeccCCC
Q 026286           84 HPLDTADKLSQDDEANAIASTM---PKLKRLEMAYH---VISTEIVLKI---LSSCALLEFLDLRGCW  142 (240)
Q Consensus        84 ~~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L~~~---~it~~~l~~l---~~~c~~Le~LdL~~C~  142 (240)
                      |       .+++.++.+|++.+   +.|++|+|+++   .|.+.+..++   ++.-+.|+.|+++.+.
T Consensus       108 N-------~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          108 N-------FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             S-------BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             C-------cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            7       46899999999887   67999999865   5788775544   5566899999997654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.09  E-value=3.1e-10  Score=100.28  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=62.2

Q ss_pred             cHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh-cCCCCcEEEEeeccCCCCCc
Q 026286           14 DLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADK   91 (240)
Q Consensus        14 ~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~-~c~~L~~L~L~~~~~~~~~~   91 (240)
                      .+..+...+|+|++|.|.+| .++   +..+  .+++|+.|+|..| .++..++..++. .+|+|+.|.|+.+.....+.
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~---l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~  236 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLS---IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD  236 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCB---CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCce---eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccc
Confidence            46566667788888888776 232   1111  3667777777664 466666666654 46777777764211000000


Q ss_pred             cCChHHHHHHH--hcCCCCCEEEeeCcccCHHHHHHHHh--cCCcccEEeccCC
Q 026286           92 LSQDDEANAIA--STMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGC  141 (240)
Q Consensus        92 ~~~d~~~~~i~--~~~~~L~~L~L~~~~it~~~l~~l~~--~c~~Le~LdL~~C  141 (240)
                      . .-..+..+.  ..+|+|++|.|.+|.+++.+...++.  .+|+|++|+|+.|
T Consensus       237 ~-~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          237 G-DMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             S-CGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             h-hHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            0 000000011  13456666666666655555444443  3455666666544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.09  E-value=4.2e-11  Score=96.30  Aligned_cols=125  Identities=17%  Similarity=0.128  Sum_probs=76.1

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.|++  +.. ...+++|+.|++++| .++.-  ..+ ..+++|+.|.++.|.+..       .....
T Consensus        42 ~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n~l~~-------~~~~~  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD--LTG-IEYAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGKDVTS-------DKIPN  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECTTCBG-------GGSCC
T ss_pred             hcCCccEEeccCCCccC--hHH-HhcCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECCccCc-------ccChh
Confidence            35678888888887764  222 346788888888876 44432  223 346888888887665421       11111


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      + ..+++|++|+|++|.|+......+ .++++|++|+|++|..++.-.  ....+++|+.|..
T Consensus       108 l-~~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l  166 (197)
T 4ezg_A          108 L-SGLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNI  166 (197)
T ss_dssp             C-TTCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEEC
T ss_pred             h-cCCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH--hhcCCCCCCEEEC
Confidence            2 256778888888777776444433 367778888887776442222  1255666776665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.02  E-value=7.3e-11  Score=94.88  Aligned_cols=139  Identities=17%  Similarity=0.205  Sum_probs=101.3

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.+..+++-.  . ...+++|++|+|++|.++.  +..+ ..+++|+.|+|++| .++...+..++ .+++|+.|.++
T Consensus        49 L~l~~n~i~~l~--~-l~~l~~L~~L~l~~n~~~~--~~~l-~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls  120 (197)
T 4ezg_A           49 ITLANINVTDLT--G-IEYAHNIKDLTINNIHATN--YNPI-SGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDIS  120 (197)
T ss_dssp             EEEESSCCSCCT--T-GGGCTTCSEEEEESCCCSC--CGGG-TTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECC
T ss_pred             EeccCCCccChH--H-HhcCCCCCEEEccCCCCCc--chhh-hcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEec
Confidence            455555555322  2 4478999999999997765  2333 47999999999996 57765555543 57999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL  161 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L  161 (240)
                      .|.+       +......+. .+++|++|+|++|. +++-.   .+.++++|+.|++++|......   ....+++|+.|
T Consensus       121 ~n~i-------~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L  186 (197)
T 4ezg_A          121 HSAH-------DDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQL  186 (197)
T ss_dssp             SSBC-------BGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEE
T ss_pred             CCcc-------CcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEE
Confidence            7754       343444454 89999999999998 77642   4668999999999999765333   23677888887


Q ss_pred             cC
Q 026286          162 GP  163 (240)
Q Consensus       162 ~~  163 (240)
                      ..
T Consensus       187 ~l  188 (197)
T 4ezg_A          187 YA  188 (197)
T ss_dssp             EE
T ss_pred             Ee
Confidence            66

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.88  E-value=5.1e-09  Score=90.66  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=58.7

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.++...  . ...+++|+.|++++| .++.  +.. ...+++|+.|.++.|.+...          .
T Consensus       219 ~~~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~l~~n~l~~~----------~  281 (347)
T 4fmz_A          219 NMTRLNSLKIGNNKITDLS--P-LANLSQLTWLEIGTN-QISD--INA-VKDLTKLKMLNVGSNQISDI----------S  281 (347)
T ss_dssp             GCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSSCCCCC----------G
T ss_pred             cCCcCCEEEccCCccCCCc--c-hhcCCCCCEEECCCC-ccCC--Chh-HhcCCCcCEEEccCCccCCC----------h
Confidence            4455555555555444311  1 234555555555554 2332  111 23445555555554433210          1


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ....+++|++|+|++|.++......+ .++++|++|+|++|.......   ...+++|+.|..
T Consensus       282 ~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l  340 (347)
T 4fmz_A          282 VLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADF  340 (347)
T ss_dssp             GGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESS
T ss_pred             hhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccC---hhhhhccceeeh
Confidence            12355666666666666655443333 356666666666665432222   245566665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.88  E-value=3e-10  Score=89.61  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|.|++|.++.  +..+....++|+.|+|++| .++.-  .. ...+++|+.|.++.|.+....    .    .
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~Ls~N~l~~~~----~----~   82 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL--DG-FPLLRRLKTLLVNNNRICRIG----E----G   82 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CC-CCCCSSCCEEECCSSCCCEEC----S----C
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc--cc-cccCCCCCEEECCCCcccccC----c----c
Confidence            47899999999998874  4445545569999999996 56642  22 345789999999888653211    1    1


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~  163 (240)
                      +...+++|++|+|++|.|+.-.....+.++++|+.|++++|........  .+...+++|+.|..
T Consensus        83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence            2247899999999999986533222456889999999999876544443  13467888888876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.88  E-value=1.4e-08  Score=82.07  Aligned_cols=120  Identities=13%  Similarity=0.203  Sum_probs=93.2

Q ss_pred             HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcC---CCCcEEEEeeccCCCCCccCChHHHHHHHhcC---CCCCE
Q 026286           37 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAIASTM---PKLKR  110 (240)
Q Consensus        37 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~---~~L~~  110 (240)
                      +..+..+....+.|+.|+|+++..|++.++.+|++.+   +.|+.|.|+.|       .+++.++.+|+..+   +.|++
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-------~igd~ga~alA~aL~~N~tL~~  102 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSPSLRV  102 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-------CCChHHHHHHHHHHhcCCccCe
Confidence            4668888888999999999986589999887776643   57999999877       45889999988665   88999


Q ss_pred             EEeeCcccCHHHHHHHHhcC---CcccEEeccCCCCCCCChHH---H---HhcCCCCccccC
Q 026286          111 LEMAYHVISTEIVLKILSSC---ALLEFLDLRGCWDVKLDDKF---M---KGNFPNLKVLGP  163 (240)
Q Consensus       111 L~L~~~~it~~~l~~l~~~c---~~Le~LdL~~C~~v~~~~~~---l---~~~~~~L~~L~~  163 (240)
                      |+|++|.|++.|+.++++.+   +.|+.|+|++|.+-...+..   +   .+.-+.|+.|..
T Consensus       103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l  164 (197)
T 1pgv_A          103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  164 (197)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence            99999999999999987765   56999999976541113321   2   245567777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=5.4e-09  Score=92.31  Aligned_cols=119  Identities=18%  Similarity=0.231  Sum_probs=90.7

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHh-cCccCcEEEecCCCC--CCH---HHHHHH--HhcCCCCcEEEEeeccCCCCCccC
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAG-RLSAVTFLDLSYCSK--IGA---PALEAI--GKHCKLLVVLCRNMHPLDTADKLS   93 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~-~~~~L~~L~Ls~c~~--it~---~~l~~l--~~~c~~L~~L~L~~~~~~~~~~~~   93 (240)
                      .++|++|.|..|.++..++..++. .+|+|+.|+|+.+..  ..+   ..+..+  +..+|+|+.|+|..+.       +
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-------i  264 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-------E  264 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-------T
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-------C
Confidence            789999999999999999988875 699999999964211  111   122222  1358999999997653       4


Q ss_pred             ChHHHHHHHh--cCCCCCEEEeeCcccCHHHHHHHHh---cCCcccEEeccCCCCCCCChHH
Q 026286           94 QDDEANAIAS--TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKF  150 (240)
Q Consensus        94 ~d~~~~~i~~--~~~~L~~L~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~v~~~~~~  150 (240)
                      ++.++.+++.  .+|+|++|+|++|.|++.++.++..   .+++|+.|+|++|. +  ++..
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i--~d~~  323 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-L--SDEM  323 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-C--CHHH
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-C--CHHH
Confidence            5666666764  5799999999999999999888764   47999999999885 5  5543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.86  E-value=7.8e-11  Score=102.32  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   85 (240)
                      ++++|++|+|++|.++  .+......+++|+.|+|++| .++ . +..-...+++|+.|.++.|.
T Consensus       102 ~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n-~l~-~-lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-PLR-A-LPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             GGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESC-CCC-C-CCGGGGGCTTCCEEEEEEET
T ss_pred             hCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCC-ccc-c-CcHHHhcCcCCCEEECCCCC
Confidence            4677788888777666  23333346777777777775 354 1 22223456777777776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.85  E-value=3.6e-09  Score=90.88  Aligned_cols=15  Identities=20%  Similarity=0.339  Sum_probs=6.8

Q ss_pred             CCCCcEEEeeCCCCC
Q 026286           22 AGSLQTLRLPRSEMS   36 (240)
Q Consensus        22 ~~~L~~L~L~~~~it   36 (240)
                      +++|+.|+|++|.++
T Consensus        62 l~~L~~L~L~~n~i~   76 (308)
T 1h6u_A           62 LNNLIGLELKDNQIT   76 (308)
T ss_dssp             CTTCCEEECCSSCCC
T ss_pred             cCCCCEEEccCCcCC
Confidence            444444444444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.85  E-value=6.9e-11  Score=95.10  Aligned_cols=129  Identities=19%  Similarity=0.156  Sum_probs=90.7

Q ss_pred             HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      ...+++|+.|+|++|.++.  +. ....+++|+.|+|++| .++.  +..+...+++|+.|.++.|.+.       .  +
T Consensus        44 ~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~l~-------~--l  108 (198)
T 1ds9_A           44 LSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIA-------S--L  108 (198)
T ss_dssp             HHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEECC-------C--H
T ss_pred             HhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCcCC-------c--C
Confidence            3468899999999987665  33 3347899999999986 4552  3333445688999999888652       2  1


Q ss_pred             HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC------h---HHHHhcCCCCccccC
Q 026286           99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---KFMKGNFPNLKVLGP  163 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~------~---~~l~~~~~~L~~L~~  163 (240)
                      ..+. .+++|++|+|++|.|+.......+..+++|++|++++|......      .   ..+...+++|+.|..
T Consensus       109 ~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          109 SGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             Cccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            2333 77999999999999887554445668999999999998653110      0   012367888888763

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.84  E-value=6.9e-10  Score=95.36  Aligned_cols=65  Identities=17%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHH-HhcCccCcEEEecCCCCCCHH--HHHHHHh-cCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQI-AGRLSAVTFLDLSYCSKIGAP--ALEAIGK-HCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l-~~~~~~L~~L~Ls~c~~it~~--~l~~l~~-~c~~L~~L~L~~~~~   86 (240)
                      .+++|++|+|++|.++......+ ...+++|+.|+|++| .++..  .+..+.. .+++|+.|.++.|.+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l  161 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHS  161 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCC
Confidence            45677777777766553222222 145667777777764 34432  1222211 126666666665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.83  E-value=2.6e-10  Score=99.00  Aligned_cols=128  Identities=21%  Similarity=0.260  Sum_probs=63.1

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHH--------hcCCCCcEEEEeeccCCCCCcc
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG--------KHCKLLVVLCRNMHPLDTADKL   92 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~--------~~c~~L~~L~L~~~~~~~~~~~   92 (240)
                      .+++|++|+|++|.++  .+......+++|+.|+|++|..++. ....++        ..+++|+.|.++.|.+..    
T Consensus       125 ~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~----  197 (328)
T 4fcg_A          125 QFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIRS----  197 (328)
T ss_dssp             GGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCCC----
T ss_pred             ccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcCc----
Confidence            4566666666666555  2232334566666666666543221 111111        135666666666554421    


Q ss_pred             CChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286           93 SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        93 ~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      +..    . ...+++|++|+|++|.++.  +...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus       198 lp~----~-l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L  260 (328)
T 4fcg_A          198 LPA----S-IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIF-GGRAPLKRLIL  260 (328)
T ss_dssp             CCG----G-GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCT-TCCCCCCEEEC
T ss_pred             chH----h-hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHh-cCCCCCCEEEC
Confidence            110    1 2256666666666666552  22224456666666666665553222111 34455555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.81  E-value=7.7e-10  Score=94.92  Aligned_cols=131  Identities=14%  Similarity=-0.010  Sum_probs=73.0

Q ss_pred             ccccccccchhcHHHHHh--CCCCCcEEEeeCCCCCHHHHHHHH-hcCccCcEEEecCCCCCCHHH----HHHHHhcCCC
Q 026286            3 LCLLDFLCADVDLFPGSA--SAGSLQTLRLPRSEMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAPA----LEAIGKHCKL   75 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~--~~~~L~~L~L~~~~itd~~l~~l~-~~~~~L~~L~Ls~c~~it~~~----l~~l~~~c~~   75 (240)
                      |.+.++.+++..+..+.+  ..++|++|+|++|.++......++ ..+++|+.|+|++| .++...    ...+. .+++
T Consensus        69 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~-~~~~  146 (310)
T 4glp_A           69 LTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW-LKPG  146 (310)
T ss_dssp             EEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT-BCSC
T ss_pred             EEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh-hccC
Confidence            455666777777665543  246799999988877653333332 46888888998886 455421    12233 6788


Q ss_pred             CcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHH-HHHH--HHhcCCcccEEeccCCCC
Q 026286           76 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE-IVLK--ILSSCALLEFLDLRGCWD  143 (240)
Q Consensus        76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~-~l~~--l~~~c~~Le~LdL~~C~~  143 (240)
                      |+.|.++.|.+.....        .....+++|++|+|++|+++.. ++..  ...++++|++|+|++|..
T Consensus       147 L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          147 LKVLSIAQAHSPAFSC--------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             CCEEEEECCSSCCCCT--------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             CCEEEeeCCCcchhhH--------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            8888887776532110        0011445555555555554332 1111  113445555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.81  E-value=3.5e-09  Score=91.67  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=89.3

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.++...-   ...+++|++|+|++|.++.  +.. ...+++|+.|++++| .++.-  . ....+++|+.|.++
T Consensus       226 L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          226 LKIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INA-VKDLTKLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLN  295 (347)
T ss_dssp             EECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECC
T ss_pred             EEccCCccCCCcc---hhcCCCCCEEECCCCccCC--Chh-HhcCCCcCEEEccCC-ccCCC--h-hhcCCCCCCEEECc
Confidence            5566666665433   4578999999999998876  222 457999999999997 46642  2 24578999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                      .|.+       +......+. .+++|++|+|++|.++....   +..+++|+.|++++|..
T Consensus       296 ~n~l-------~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          296 NNQL-------GNEDMEVIG-GLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             SSCC-------CGGGHHHHH-TCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC--
T ss_pred             CCcC-------CCcChhHhh-ccccCCEEEccCCccccccC---hhhhhccceeehhhhcc
Confidence            7754       334444444 79999999999999876432   66899999999999864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.79  E-value=1.4e-09  Score=93.24  Aligned_cols=150  Identities=15%  Similarity=0.046  Sum_probs=86.3

Q ss_pred             ccccccccchhcHHHHH-hCCCCCcEEEeeCCCCCHHH----HHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCc
Q 026286            3 LCLLDFLCADVDLFPGS-ASAGSLQTLRLPRSEMSDSI----VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV   77 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~-~~~~~L~~L~L~~~~itd~~----l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~   77 (240)
                      |.+.++.++...-..++ ..+++|++|+|++|.++...    ...+. .+++|+.|+|++| .++...... ...+++|+
T Consensus        96 L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~  172 (310)
T 4glp_A           96 LTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAFSCEQ-VRAFPALT  172 (310)
T ss_dssp             EEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCCCTTS-CCCCTTCC
T ss_pred             EEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCC-CcchhhHHH-hccCCCCC
Confidence            34445544443333332 46778888888888776421    12222 6788888888885 354322122 23568888


Q ss_pred             EEEEeeccCCCCCccCChHHHHH---HHhcCCCCCEEEeeCcccC--HHHHHHHHhcCCcccEEeccCCCCCCCChHHHH
Q 026286           78 VLCRNMHPLDTADKLSQDDEANA---IASTMPKLKRLEMAYHVIS--TEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  152 (240)
Q Consensus        78 ~L~L~~~~~~~~~~~~~d~~~~~---i~~~~~~L~~L~L~~~~it--~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~  152 (240)
                      .|.++.|.+       .......   ....+++|++|+|++|.|+  ......++.++++|++|+|++|.........+ 
T Consensus       173 ~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~-  244 (310)
T 4glp_A          173 SLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA-  244 (310)
T ss_dssp             EEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-
T ss_pred             EEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-
Confidence            888876643       1111111   1136788888888888876  33333455677888888888877553311111 


Q ss_pred             hcC---CCCccccC
Q 026286          153 GNF---PNLKVLGP  163 (240)
Q Consensus       153 ~~~---~~L~~L~~  163 (240)
                      ..+   ++|+.|..
T Consensus       245 ~~~~~~~~L~~L~L  258 (310)
T 4glp_A          245 PRCMWSSALNSLNL  258 (310)
T ss_dssp             SSCCCCTTCCCEEC
T ss_pred             HhccCcCcCCEEEC
Confidence            222   56666665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.78  E-value=4.6e-09  Score=89.58  Aligned_cols=58  Identities=21%  Similarity=0.165  Sum_probs=28.1

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   85 (240)
                      .+++|++|+|++|.++.-  .. ...+++|+.|+|++| .++.  +.. ...+++|+.|.++.|.
T Consensus        66 ~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           66 YLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDEN-KVKD--LSS-LKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             GCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSS-CCCC--GGG-GTTCTTCCEEECTTSC
T ss_pred             cCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCC-cCCC--Chh-hccCCCCCEEECCCCc
Confidence            456666666666655431  11 235555666666554 2332  112 2334555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.78  E-value=1.9e-10  Score=95.80  Aligned_cols=130  Identities=15%  Similarity=0.123  Sum_probs=62.6

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.|+... ......+++|+.|+|++| .++.-. ......+++|+.|.|+.|.+.....        .
T Consensus        57 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--------~  125 (251)
T 3m19_A           57 GLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGNQLKSLPS--------G  125 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT--------T
T ss_pred             CcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCCcCCCcCh--------h
Confidence            4555666666665544311 111234556666666654 343211 1122345666666665554421110        0


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      +...+++|++|+|++|.|+.... ..+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus       126 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l  186 (251)
T 3m19_A          126 VFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITL  186 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred             HhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHHH-hCCCCCCEEEe
Confidence            11246677777777776653111 123456777777777765443333222 34555665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.77  E-value=9.3e-09  Score=87.64  Aligned_cols=135  Identities=23%  Similarity=0.224  Sum_probs=89.6

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.+++..  . ...+++|+.|+|++|.++.  +.. ...+++|+.|+|++| .++.  +..+ ..+++|+.|.++
T Consensus        73 L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n-~i~~--~~~l-~~l~~L~~L~l~  142 (291)
T 1h6t_A           73 LFLNGNKLTDIK--P-LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHN-GISD--INGL-VHLPQLESLYLG  142 (291)
T ss_dssp             EECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTS-CCCC--CGGG-GGCTTCCEEECC
T ss_pred             EEccCCccCCCc--c-cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCC-cCCC--Chhh-cCCCCCCEEEcc
Confidence            455555555432  2 4478888999998887765  333 347888999999886 4554  2233 457888998888


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      .|.+...          .....+++|++|+|++|.|+....   +.++++|+.|+|++|.......   ...+++|+.|.
T Consensus       143 ~n~l~~~----------~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~~---l~~l~~L~~L~  206 (291)
T 1h6t_A          143 NNKITDI----------TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLRA---LAGLKNLDVLE  206 (291)
T ss_dssp             SSCCCCC----------GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCGG---GTTCTTCSEEE
T ss_pred             CCcCCcc----------hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCChh---hccCCCCCEEE
Confidence            7755321          123378889999999888775332   5678889999998886543321   25567777776


Q ss_pred             C
Q 026286          163 P  163 (240)
Q Consensus       163 ~  163 (240)
                      .
T Consensus       207 l  207 (291)
T 1h6t_A          207 L  207 (291)
T ss_dssp             E
T ss_pred             C
Confidence            5

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.77  E-value=4.4e-10  Score=96.61  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=93.5

Q ss_pred             ccccccccchhcHHHH-HhCCCCCcEEEeeCCCCCHH--HHHHHHhc-CccCcEEEecCCCCCCHHHHHHHHhcCCCCcE
Q 026286            3 LCLLDFLCADVDLFPG-SASAGSLQTLRLPRSEMSDS--IVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV   78 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i-~~~~~~L~~L~L~~~~itd~--~l~~l~~~-~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~   78 (240)
                      |.+.++.++...-..+ ...+++|++|+|++|.++..  .+..+... +++|++|+|++| .++......+ ..+++|+.
T Consensus       100 L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~  177 (312)
T 1wwl_A          100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV-RVFPALST  177 (312)
T ss_dssp             EEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC-CCCSSCCE
T ss_pred             EEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh-ccCCCCCE
Confidence            4555555554333222 25788999999999977653  22232211 389999999986 4554322233 35789999


Q ss_pred             EEEeeccCCCCCccCChH-HHH-HH-HhcCCCCCEEEeeCcccCH--HHHHHHHhcCCcccEEeccCCCCCCCChHHHHh
Q 026286           79 LCRNMHPLDTADKLSQDD-EAN-AI-ASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG  153 (240)
Q Consensus        79 L~L~~~~~~~~~~~~~d~-~~~-~i-~~~~~~L~~L~L~~~~it~--~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~  153 (240)
                      |.++.|.+       ... ... .+ ...+++|++|+|++|.|+.  .....+..++++|++|+|++|............
T Consensus       178 L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          178 LDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             EECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             EECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            99987743       111 111 22 1577899999999999873  333455667899999999988755322111113


Q ss_pred             cCCCCccccCC
Q 026286          154 NFPNLKVLGPF  164 (240)
Q Consensus       154 ~~~~L~~L~~~  164 (240)
                      ..++|+.|...
T Consensus       251 ~l~~L~~L~Ls  261 (312)
T 1wwl_A          251 WPSQLNSLNLS  261 (312)
T ss_dssp             CCTTCCEEECT
T ss_pred             hcCCCCEEECC
Confidence            34667776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.76  E-value=1.4e-09  Score=99.37  Aligned_cols=64  Identities=14%  Similarity=0.232  Sum_probs=32.8

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      .+++|++|+|++|.++......+ ..+++|+.|+|++| .++. ..+......+++|+.|.++.|.+
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l  386 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSV  386 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred             hCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcC
Confidence            55666666666665554222222 35666666666664 3443 12222234456666666655543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.76  E-value=4.2e-10  Score=94.85  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=34.5

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      .+++|+.|+|++|.++.  +.. ...+++|++|+|++| .++.-. ......+++|+.|.++.|.+
T Consensus        61 ~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l  121 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHD--ISA-LKELTNLTYLILTGN-QLQSLP-NGVFDKLTNLKELVLVENQL  121 (272)
T ss_dssp             GCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCcEEECCCCCCCC--chh-hcCCCCCCEEECCCC-ccCccC-hhHhcCCcCCCEEECCCCcC
Confidence            56777777777776654  222 235677777777765 344211 11223456677777765544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.76  E-value=1.6e-10  Score=97.77  Aligned_cols=37  Identities=24%  Similarity=0.166  Sum_probs=16.4

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      .+++|++|+|++|.++...... ...+++|+.|+|++|
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDN   90 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSC
T ss_pred             cCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCC
Confidence            3455555555555444311111 123455555555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.74  E-value=9.3e-10  Score=86.76  Aligned_cols=128  Identities=13%  Similarity=0.078  Sum_probs=89.5

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.++.  +..+....++|+.|+|++|.|+.  +. ....+++|+.|+|++| .++.- ...+...+++|+.|.++
T Consensus        24 L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~--~~-~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           24 LDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILT   96 (176)
T ss_dssp             EECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECC
T ss_pred             EEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCc--cc-ccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECC
Confidence            4566666663  24455556699999999998876  32 3347899999999996 56642 12233568999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH--HHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~--l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+...    .  .+.. ...+++|++|+|++|.++...  ...++..+|+|+.|++++|...
T Consensus        97 ~N~i~~~----~--~~~~-l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           97 NNSLVEL----G--DLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             SCCCCCG----G--GGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCcCCcc----h--hhHh-hhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            8865321    1  1112 237899999999999976421  2235678999999999987654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.73  E-value=4.9e-10  Score=94.77  Aligned_cols=58  Identities=16%  Similarity=0.057  Sum_probs=29.8

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|+|++|.++.... ..+.++++|+.|+|++|.........+ ..+++|+.|..
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l  232 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRL  232 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEEC
T ss_pred             CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHc-ccCcccCEEec
Confidence            45566666666665543221 122355666666666665443333222 45566666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.71  E-value=8.8e-09  Score=96.76  Aligned_cols=54  Identities=26%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|+|++|.|+....   +..+++|+.|+|++|....+.  . ...+++|+.|..
T Consensus       151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l~--~-l~~l~~L~~L~L  204 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR--A-LAGLKNLDVLEL  204 (605)
T ss_dssp             SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG--G-GTTCTTCSEEEC
T ss_pred             ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCCh--H-HccCCCCCEEEc
Confidence            56677777777776554222   456677777777776543221  1 244566666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.71  E-value=3.8e-10  Score=101.21  Aligned_cols=144  Identities=16%  Similarity=0.173  Sum_probs=84.9

Q ss_pred             cchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCC
Q 026286           10 CADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA   89 (240)
Q Consensus        10 ~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~   89 (240)
                      |+...+..+-.-.++|++|+|++|.|+..... ....+++|++|+|++|. ++..........+++|++|.++.|.+...
T Consensus        17 c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~   94 (455)
T 3v47_A           17 CINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQL   94 (455)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEE
T ss_pred             cCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCcc
Confidence            44444444444446788888888877652222 23468888888888863 33211112234568888888876654211


Q ss_pred             CccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHH-HHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286           90 DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL-KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        90 ~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~-~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                             ....+ ..+++|++|+|++|.++...+. ..+.++++|++|+|++|.........+...+++|+.|..
T Consensus        95 -------~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           95 -------ETGAF-NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             -------CTTTT-TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             -------Chhhc-cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence                   01111 2567888888888887654333 224567788888888776554333222356677777665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=1.4e-08  Score=87.16  Aligned_cols=74  Identities=20%  Similarity=0.232  Sum_probs=39.0

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.+++..-   ...+++|+.|+|++|.++.  +.. ...+++|+.|+|++| .++.  +.. ...+++|+.|.++
T Consensus        68 L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~  137 (308)
T 1h6u_A           68 LELKDNQITDLAP---LKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTST-QITD--VTP-LAGLSNLQVLYLD  137 (308)
T ss_dssp             EECCSSCCCCCGG---GTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTS-CCCC--CGG-GTTCTTCCEEECC
T ss_pred             EEccCCcCCCChh---HccCCCCCEEEccCCcCCC--chh-hcCCCCCCEEECCCC-CCCC--chh-hcCCCCCCEEECC
Confidence            4455555544322   3456677777777776554  222 235666667766665 3443  112 2345666666665


Q ss_pred             eccC
Q 026286           83 MHPL   86 (240)
Q Consensus        83 ~~~~   86 (240)
                      .|.+
T Consensus       138 ~n~l  141 (308)
T 1h6u_A          138 LNQI  141 (308)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            5543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.70  E-value=6.4e-09  Score=90.57  Aligned_cols=62  Identities=26%  Similarity=0.196  Sum_probs=28.8

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeec
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH   84 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~   84 (240)
                      .+++|++|+|++|.++.-. ......+++|++|+|++| .++.-........+++|+.|.++.|
T Consensus        98 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             TCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEES
T ss_pred             CCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCC
Confidence            4566666666666554311 122235666666666654 2331000011233455555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.69  E-value=4.8e-10  Score=94.36  Aligned_cols=62  Identities=18%  Similarity=0.062  Sum_probs=26.0

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   85 (240)
                      .+++|++|+|++|.|+.- ...+...+++|++|+|++| .++.-. ......+++|+.|.++.|.
T Consensus        59 ~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN-KLQALP-IGVFDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             SCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS-CCCCCC-TTTTTTCSSCCEEECCSSC
T ss_pred             CCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCC-cCCcCC-HhHcccccCCCEEECCCCc
Confidence            345555555555544320 0111224555555555553 233211 1112334555555554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.69  E-value=1.3e-09  Score=91.88  Aligned_cols=130  Identities=14%  Similarity=0.137  Sum_probs=61.7

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.++.-. ......+++|+.|+|++| .++.- .......+++|+.|.++.|.+.....        .
T Consensus        83 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~--------~  151 (272)
T 3rfs_A           83 ELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVEN-QLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPK--------G  151 (272)
T ss_dssp             TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT--------T
T ss_pred             CCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCC-cCCcc-CHHHhccCCCCCEEECCCCccCccCH--------H
Confidence            4566666666666554211 111234566666666664 34321 11112345666666665554321110        0


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      +...+++|++|+|++|+|+... ...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus       152 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l  212 (272)
T 3rfs_A          152 VFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWL  212 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred             HhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHH-hCCcCCCEEEc
Confidence            1124566666666666655211 1223456666666666665443222211 34455555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.68  E-value=6.3e-09  Score=87.50  Aligned_cols=54  Identities=17%  Similarity=0.168  Sum_probs=32.9

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|+|++|+|+...   .+..+++|+.|+|++|.....  .. ...+++|+.|..
T Consensus       126 ~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l  179 (263)
T 1xeu_A          126 HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDL  179 (263)
T ss_dssp             TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEE
T ss_pred             CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeC
Confidence            6677777777777766532   345677777777777765433  11 244555665544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.68  E-value=6.8e-10  Score=93.44  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .+++|++|+|++|.++...+...+.++++|++|+|++|...
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            56778888888777665333344556778888888777654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.68  E-value=1e-10  Score=99.83  Aligned_cols=114  Identities=15%  Similarity=0.097  Sum_probs=51.4

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.++..........+++|+.|++++| .++.... .....+++|+.|.++.|.+..       .....
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-------~~~~~  169 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQE-------NFLPD  169 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECST-TTTTTCTTCCEEECTTCEEGG-------GEECS
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccch-hhcccCcCCCEEECCCCcccc-------ccchh
Confidence            46667777776665443211112335666666666664 2332111 112344666666665443211       00000


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ....+++|++|+|++|.|+.... ..+.++++|+.|+|++|...
T Consensus       170 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          170 IFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCS
T ss_pred             HHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccC
Confidence            11234555555555555443211 11234555555555555433

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.68  E-value=1.9e-08  Score=94.53  Aligned_cols=136  Identities=19%  Similarity=0.144  Sum_probs=95.9

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.++.-  ..+ ..+++|+.|+|++|.|+..  .. ...+++|+.|+|++| .++.  +..+ ..+++|+.|.|+
T Consensus        48 L~l~~n~i~~l--~~l-~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~~L~~L~Ls  117 (605)
T 1m9s_A           48 IIANNSDIKSV--QGI-QYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDEN-KIKD--LSSL-KDLKKLKSLSLE  117 (605)
T ss_dssp             CBCTTCCCCCC--TTG-GGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSS-CCCC--CTTS-TTCTTCCEEECT
T ss_pred             EECcCCCCCCC--hHH-ccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCC-CCCC--Chhh-ccCCCCCEEEec
Confidence            44555554432  233 4689999999999987652  22 458999999999997 4554  2233 457999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      .|.+...         .. ...+++|+.|+|++|.|+..   ..+..+++|+.|+|++|.......   ...+++|+.|.
T Consensus       118 ~N~l~~l---------~~-l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~  181 (605)
T 1m9s_A          118 HNGISDI---------NG-LVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLY  181 (605)
T ss_dssp             TSCCCCC---------GG-GGGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred             CCCCCCC---------cc-ccCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEE
Confidence            7765321         11 33789999999999998763   446689999999999997653333   36678888776


Q ss_pred             CC
Q 026286          163 PF  164 (240)
Q Consensus       163 ~~  164 (240)
                      ..
T Consensus       182 Ls  183 (605)
T 1m9s_A          182 LS  183 (605)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.67  E-value=7.2e-10  Score=89.49  Aligned_cols=129  Identities=14%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|+.|+|++|.++.-. ......+++|++|+|++| .++.- .......+++|+.|.++.|.+.....        .+
T Consensus        27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~   95 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPN--------GV   95 (208)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT--------TT
T ss_pred             CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCcCCccCH--------hH
Confidence            457888888888766311 222346788888888875 45521 12223456788888887665532110        11


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ...+++|++|+|++|.|+... ...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l  155 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVF-DRLTSLQYIWL  155 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred             hcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHHh-ccCCCccEEEe
Confidence            236678888888888766311 1223467788888888775443333222 44566666655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.66  E-value=7e-10  Score=93.32  Aligned_cols=132  Identities=14%  Similarity=0.138  Sum_probs=88.7

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ..+++|++|+|++|.++.-.. .....+++|+.|+|++| .++.-.. .....+++|+.|.++.|.+.....        
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--------  150 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRN-QLKSLPP-RVFDSLTKLTYLSLGYNELQSLPK--------  150 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--------
T ss_pred             cCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCC-ccCeeCH-HHhCcCcCCCEEECCCCcCCccCH--------
Confidence            468899999999997764221 23347899999999986 4554222 223567999999998876542211        


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  164 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  164 (240)
                      .....+++|++|+|++|.|+.... ..+.++++|++|+|++|.........+ ..+++|+.|...
T Consensus       151 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~  213 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAF-DSLEKLKMLQLQ  213 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred             hHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCHHHh-ccccCCCEEEec
Confidence            112367999999999998764222 224578999999999986554443322 456777777663

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.65  E-value=1.3e-09  Score=89.69  Aligned_cols=140  Identities=16%  Similarity=0.097  Sum_probs=90.3

Q ss_pred             cchhcHHHHHh-CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCC
Q 026286           10 CADVDLFPGSA-SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT   88 (240)
Q Consensus        10 ~tD~~L~~i~~-~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~   88 (240)
                      |+...+..+-. -.++|+.|+|++|.|+... ......+++|+.|+|++| .++.- .......+++|+.|.|+.|.+..
T Consensus        26 c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~l~~  102 (229)
T 3e6j_A           26 CRSKRHASVPAGIPTNAQILYLHDNQITKLE-PGVFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTNQLTV  102 (229)
T ss_dssp             CTTSCCSSCCSCCCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccCCCcCccCCCCCCCCCEEEcCCCccCccC-HHHhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCCcCCc
Confidence            44444443332 2468999999999776521 222346899999999986 45431 11223567899999998876542


Q ss_pred             CCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286           89 ADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        89 ~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ...        .+...+++|++|+|++|.|+  .+..-+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus       103 l~~--------~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l  166 (229)
T 3e6j_A          103 LPS--------AVFDRLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAF-DRLSSLTHAYL  166 (229)
T ss_dssp             CCT--------TTTTTCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred             cCh--------hHhCcchhhCeEeccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHH-hCCCCCCEEEe
Confidence            211        11236789999999999987  333334688999999999886554443222 45667776655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.62  E-value=1.1e-09  Score=99.20  Aligned_cols=36  Identities=22%  Similarity=0.121  Sum_probs=15.0

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY   57 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~   57 (240)
                      .+++|++|+|++|.|+...... ...+++|+.|+|++
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~   89 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRS   89 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCC
Confidence            3445555555554443311111 12344555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.62  E-value=2.1e-09  Score=103.27  Aligned_cols=63  Identities=19%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHH--HHhcCCCCcEEEEeec
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA--IGKHCKLLVVLCRNMH   84 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~--l~~~c~~L~~L~L~~~   84 (240)
                      ++++|++|+|++|.++......+..++++|++|+|++| .++......  +...+++|+.|.++.|
T Consensus       124 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred             CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccCCCCCEEECCCC
Confidence            56666666666664432211122234666666666664 344322222  1344556666665544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.61  E-value=2.2e-09  Score=86.58  Aligned_cols=129  Identities=16%  Similarity=0.113  Sum_probs=86.1

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.+..++...- .....+++|++|+|++|.++.- .......+++|++|+|++| .++.- .......+++|+.|.++
T Consensus        33 L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           33 LDLETNSLKSLPN-GVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALN  108 (208)
T ss_dssp             EECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECC
T ss_pred             EEcCCCccCcCCh-hhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcC
Confidence            4455555553222 2234789999999999987731 1223347899999999996 46532 12223567999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+.....        .....+++|++|+|++|.|+... ...+..+++|++|+|++|...
T Consensus       109 ~N~l~~~~~--------~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          109 TNQLQSLPD--------GVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             SSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCcccCH--------hHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee
Confidence            876542111        11236899999999999977421 233557899999999998654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.61  E-value=1.5e-08  Score=81.23  Aligned_cols=120  Identities=18%  Similarity=0.185  Sum_probs=85.2

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.+..++.-.  .+ ..+++|+.|+|++|.|+.  +..+...+++|+.|+|++| .++.  +..+ ..+++|+.|.++
T Consensus        53 L~ls~n~l~~l~--~~-~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~l~  123 (198)
T 1ds9_A           53 LALSTNNIEKIS--SL-SGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGI-EKLVNLRVLYMS  123 (198)
T ss_dssp             EECSEEEESCCC--CH-HHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHH-HHHHHSSEEEES
T ss_pred             EECCCCCCcccc--cc-ccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCcc-ccCCCCCEEECC
Confidence            455555555532  33 367899999999997763  4455556899999999997 5664  3344 346899999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHH---------HHHHHHhcCCcccEEec
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---------IVLKILSSCALLEFLDL  138 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~---------~l~~l~~~c~~Le~LdL  138 (240)
                      .|.+       +.-........+++|++|++++|.++..         ....++..+|+|+.|+-
T Consensus       124 ~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          124 NNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             EEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             CCcC-------CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            8854       3323223344899999999999997654         22345678999999983

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.60  E-value=6.4e-08  Score=88.71  Aligned_cols=66  Identities=20%  Similarity=0.122  Sum_probs=42.9

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHH--HhcCccCcEEEecCCCCCCHHH-HHHHHhcCCCCcEEEEeeccC
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQI--AGRLSAVTFLDLSYCSKIGAPA-LEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l--~~~~~~L~~L~Ls~c~~it~~~-l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      ..+++|+.|+|++|.++.......  ...+++|+.|+|++| .++.-. .......+++|+.|.++.|.+
T Consensus       331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  399 (549)
T 2z81_A          331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNTF  399 (549)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             hcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCCC
Confidence            467888888888888877544332  245788888888886 454322 123345677888888876654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.60  E-value=1.2e-09  Score=93.13  Aligned_cols=60  Identities=28%  Similarity=0.348  Sum_probs=26.6

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      .+++|+.|+|++|.|+.-  ... ..+++|+.|+|++| .++.  +......+++|+.|.++.|.+
T Consensus        53 ~l~~L~~L~L~~n~l~~~--~~~-~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~l  112 (290)
T 1p9a_G           53 PYTRLTQLNLDRAELTKL--QVD-GTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRL  112 (290)
T ss_dssp             TCTTCCEEECTTSCCCEE--ECC-SCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCEEECCCCccCcc--cCC-CCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCcC
Confidence            345555555555544431  111 24555555555553 2331  111223445555555555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.59  E-value=1.7e-09  Score=96.98  Aligned_cols=133  Identities=17%  Similarity=0.045  Sum_probs=85.3

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |+|.+..++...-..+ .++++|++|+|++|.++..........+++|++|+|++| .++......+ ..+++|+.|.++
T Consensus        35 L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~  111 (455)
T 3v47_A           35 VDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF-NGLANLEVLTLT  111 (455)
T ss_dssp             EECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT-TTCTTCCEEECT
T ss_pred             EEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhc-cCcccCCEEeCC
Confidence            5566666654333333 368899999999987642211223346889999999986 4554322333 456889999997


Q ss_pred             eccCCCCCccCChHHHHH-HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286           83 MHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  145 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~-i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~  145 (240)
                      .|.+       +...... ....+++|++|+|++|.++......++.++++|++|+|++|....
T Consensus       112 ~n~l-------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A          112 QCNL-------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             TSCC-------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CCCC-------CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            6644       2211111 133678899999999887754333446678899999998886543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.59  E-value=4.5e-08  Score=88.45  Aligned_cols=54  Identities=20%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|++++|.++..   .-+.++++|+.|++++|.......   ...+++|+.|..
T Consensus       329 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l  382 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGL  382 (466)
T ss_dssp             GCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEEC
T ss_pred             cCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEec
Confidence            566666666666665542   123456677777776665432222   355666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.58  E-value=1.7e-08  Score=84.87  Aligned_cols=120  Identities=21%  Similarity=0.166  Sum_probs=89.0

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|+.|+|++|.|+.  +.. ...+++|+.|+|++| .++.-.  . ...+++|+.|.++.|.+....         .
T Consensus        39 ~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~L~~N-~i~~~~--~-l~~l~~L~~L~L~~N~l~~l~---------~  102 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQS--LAG-MQFFTNLKELHLSHN-QISDLS--P-LKDLTKLEELSVNRNRLKNLN---------G  102 (263)
T ss_dssp             HHTTCSEEECTTSCCCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCSSCCEEECCSSCCSCCT---------T
T ss_pred             hcCcCcEEECcCCCccc--chH-HhhCCCCCEEECCCC-ccCCCh--h-hccCCCCCEEECCCCccCCcC---------c
Confidence            57899999999998875  333 347999999999996 566432  2 457899999999988663321         1


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  164 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  164 (240)
                      +. . ++|++|+|++|.|+.-  . -+.++++|+.|+|++|......  . ...+++|+.|...
T Consensus       103 ~~-~-~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~~~--~-l~~l~~L~~L~L~  158 (263)
T 1xeu_A          103 IP-S-ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKSIV--M-LGFLSKLEVLDLH  158 (263)
T ss_dssp             CC-C-SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCBCG--G-GGGCTTCCEEECT
T ss_pred             cc-c-CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCCCh--H-HccCCCCCEEECC
Confidence            11 2 8999999999998763  2 3568999999999998765332  2 3567888888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.58  E-value=4.3e-09  Score=90.58  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=55.7

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      +++|++|+|++|.++...-. ....+++|+.|+|++| .++......+...+++|+.|.++.|.+.....         .
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------~  187 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---------Q  187 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---------C
T ss_pred             cCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccccc---------c
Confidence            45666666666665542111 1224667777777764 45543334444456677777776554421100         0


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                       ..+++|++|+|++|.|+.-  ..-+..+++|+.|+|++|...
T Consensus       188 -~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          188 -VVFAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             -CCCTTCCEEECCSSCCCEE--CGGGGGGTTCSEEECTTSCCC
T ss_pred             -cccccCCEEECCCCcCCcc--hhhhcccCcccEEECcCCccc
Confidence             0255666666666665421  111334566666666665433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.57  E-value=4.7e-09  Score=85.92  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=82.4

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      ++|+.|+|++|.|+.-.. .....+++|+.|+|++| .++.-...++ ..+++|+.|.|+.|.+.....        .+.
T Consensus        32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~--------~~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVLYGNKITELPK--------SLF  100 (220)
T ss_dssp             TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEECCSSCCCCCCT--------TTT
T ss_pred             cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEECCCCcCCccCH--------hHc
Confidence            478999999987764211 12346788999999986 4654222233 456889999998776642211        112


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ..+++|++|+|++|.|+.... ..+.++++|++|+|++|...+.....+ ..+++|+.|..
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  159 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHL  159 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHH-hCCCCCCEEEe
Confidence            367889999999888764322 234467889999998887664444332 44566666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.57  E-value=2.3e-09  Score=96.98  Aligned_cols=129  Identities=22%  Similarity=0.034  Sum_probs=78.8

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.|.+..++...-..+ ..+++|+.|+|++|.++.-. ......+++|+.|+|++| .++...... ...+++|+.|.++
T Consensus        61 L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~L~~L~l~  136 (477)
T 2id5_A           61 LELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISEN-KIVILLDYM-FQDLYNLKSLEVG  136 (477)
T ss_dssp             EECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEEEC
T ss_pred             EECCCCccCEeChhhh-hCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCC-ccccCChhH-ccccccCCEEECC
Confidence            4455554444322222 36889999999999776421 112346899999999986 455422222 3567899999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+.....       .++ ..+++|++|+|++|.++.... ..+.++++|+.|+|++|...
T Consensus       137 ~n~l~~~~~-------~~~-~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          137 DNDLVYISH-------RAF-SGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             CTTCCEECT-------TSS-TTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCC
T ss_pred             CCccceeCh-------hhc-cCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCc
Confidence            775532110       011 256788888888887654222 23446777777777776544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.56  E-value=7.5e-09  Score=85.13  Aligned_cols=128  Identities=17%  Similarity=0.069  Sum_probs=87.6

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.|.+..++...-.. ...+++|+.|+|++|.|+.-. ......+++|+.|+|++| .++.- .......+++|+.|.|+
T Consensus        45 L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           45 LYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLKELFMC  120 (229)
T ss_dssp             EECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECC
T ss_pred             EEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhCeEecc
Confidence            455555555432222 346889999999999875411 123357899999999996 56632 12233567999999999


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+....    .    .+ ..+++|++|+|++|.|+.-.. ..+..+++|+.|+|+++...
T Consensus       121 ~N~l~~lp----~----~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          121 CNKLTELP----R----GI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCSCC----T----TG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred             CCcccccC----c----cc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence            88764221    1    12 488999999999999874221 34567899999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.55  E-value=1.4e-09  Score=88.98  Aligned_cols=113  Identities=15%  Similarity=0.089  Sum_probs=80.6

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ..+++|+.|+|++|.|+.-. ......+++|+.|+|++| .++. ....+...+++|+.|.|+.|.+.....       .
T Consensus        53 ~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~-------~  122 (220)
T 2v9t_B           53 SPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGN-KITE-LPKSLFEGLFSLQLLLLNANKINCLRV-------D  122 (220)
T ss_dssp             TTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCCCT-------T
T ss_pred             hCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCC-cCCc-cCHhHccCCCCCCEEECCCCCCCEeCH-------H
Confidence            36789999999999887522 222347899999999996 4663 122334567999999998886643211       1


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      . ...+++|++|+|++|.|+.... ..+..+++|+.|+|+++.-.
T Consensus       123 ~-~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          123 A-FQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             T-TTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEE
T ss_pred             H-cCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcC
Confidence            1 2368999999999999775322 23457899999999998754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.55  E-value=8.3e-08  Score=86.73  Aligned_cols=55  Identities=22%  Similarity=0.163  Sum_probs=34.0

Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ..+++|++|+|++|.++....   +..+++|+.|++++|.....  .. ...+++|+.|..
T Consensus       306 ~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l  360 (466)
T 1o6v_A          306 SNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SS-LANLTNINWLSA  360 (466)
T ss_dssp             GGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             cCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hh-hccCCCCCEEeC
Confidence            366777777777777664322   45677788888877754422  11 245666666655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.54  E-value=7.3e-09  Score=96.58  Aligned_cols=124  Identities=21%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      .+|+.|+|++|.|+.  +.. ...+++|+.|+|++| .++  .+......+++|+.|.|+.|.+..    +     ..+ 
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~~----l-----p~l-  504 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNALEN----V-----DGV-  504 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSCCCC----C-----GGG-
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCCCCC----C-----ccc-
Confidence            369999999998775  444 457899999999996 566  232233467999999998886632    1     122 


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCCh--HHHHhcCCCCcccc
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  162 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~--~~l~~~~~~L~~L~  162 (240)
                      ..+++|++|+|++|.|+.......+.++++|+.|+|++|.......  ..+...+|+|+.|.
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            3789999999999998764313445689999999999987654322  23456788888874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.54  E-value=1.2e-09  Score=101.13  Aligned_cols=143  Identities=16%  Similarity=0.107  Sum_probs=77.1

Q ss_pred             ccchhcHHHHHhCCC-CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286            9 LCADVDLFPGSASAG-SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   87 (240)
Q Consensus         9 ~~tD~~L~~i~~~~~-~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~   87 (240)
                      .|+...|..|=...| ++++|+|++|.|+.-. ......+++|++|+|++| .|+.-...+ ...+++|++|.|+.|.+.
T Consensus        37 ~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           37 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             ECTTSCCSSCCSSSCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCC
T ss_pred             ECCCCCcCccCCCCCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCcCC
Confidence            455555555544443 7888888888776411 112246788888888886 455311112 245678888888766543


Q ss_pred             CCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286           88 TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        88 ~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ...    .    .....+++|++|+|++|.|+.-. ...+.++++|++|+|++|.............+++|+.|..
T Consensus       114 ~l~----~----~~f~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          114 SLA----L----GAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             EEC----G----GGGTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CCC----H----HHhcCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            211    0    11135667777777777655311 0113456677777777665432221111234455555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.54  E-value=3.4e-09  Score=95.22  Aligned_cols=37  Identities=22%  Similarity=0.065  Sum_probs=18.9

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      .+++|++|+|++|.|+.-. ......+++|+.|+|++|
T Consensus       110 ~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSC
T ss_pred             CCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCC
Confidence            4566666666666554211 111224555666666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.54  E-value=1.9e-09  Score=88.23  Aligned_cols=129  Identities=15%  Similarity=0.080  Sum_probs=74.7

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      +.++.|+|++|.|+.-....+...+++|+.|+|++| .++.-...+ ...+++|+.|.|+.|.+....    .    ...
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~~~----~----~~~  101 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGA-FEGASGVNEILLTSNRLENVQ----H----KMF  101 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSCCCCCC----G----GGG
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHH-hCCCCCCCEEECCCCccCccC----H----hHh
Confidence            467788888887654211222346788888888875 455321112 235678888888776553211    1    112


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ..+++|++|+|++|.|+.... ..+.++++|++|+|++|...+.....+ ..+++|+.|..
T Consensus       102 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  160 (220)
T 2v70_A          102 KGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNL  160 (220)
T ss_dssp             TTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCCEEEC
T ss_pred             cCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCCEEEe
Confidence            367788888888887664211 223467778888888776554333222 34566666654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.54  E-value=2.1e-08  Score=91.54  Aligned_cols=145  Identities=19%  Similarity=0.189  Sum_probs=89.8

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   81 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L   81 (240)
                      |.+.++.++......+ ..+++|+.|+|++|.++. ..+......+++|+.|+|++| .++..........+++|+.|.+
T Consensus       329 L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          329 LDFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             EECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEEC
T ss_pred             EEeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEEC
Confidence            4555555555333333 367888888888888775 234444557888888888886 4554222222345688888888


Q ss_pred             eeccCCCCCccCChHHHHHHHhcC-CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcc
Q 026286           82 NMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKV  160 (240)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~i~~~~-~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~  160 (240)
                      +.|.+.       ..    +...+ ++|++|+|++|+|+  .+..-+.++++|++|+|++|......... ...+++|+.
T Consensus       407 s~N~l~-------~~----~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~  472 (520)
T 2z7x_B          407 SSNILT-------DT----IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGI-FDRLTSLQK  472 (520)
T ss_dssp             CSSCCC-------GG----GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTT-TTTCTTCCE
T ss_pred             cCCCCC-------cc----hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHH-hccCCcccE
Confidence            777542       11    11123 68888888888877  34433447888888888888655444331 245566666


Q ss_pred             ccC
Q 026286          161 LGP  163 (240)
Q Consensus       161 L~~  163 (240)
                      |..
T Consensus       473 L~l  475 (520)
T 2z7x_B          473 IWL  475 (520)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.54  E-value=5e-09  Score=94.45  Aligned_cols=58  Identities=19%  Similarity=0.061  Sum_probs=25.8

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|+|++|.|+.... ..+.++++|+.|+|++|.........+ ..+++|+.|..
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  297 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDLF-TPLRYLVELHL  297 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTSS-TTCTTCCEEEC
T ss_pred             CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHHh-ccccCCCEEEc
Confidence            34455555555554432111 112345666666666654332222211 34455555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.52  E-value=1.6e-08  Score=97.24  Aligned_cols=128  Identities=18%  Similarity=0.216  Sum_probs=82.5

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHH--HHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQ--IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC   80 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~--l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~   80 (240)
                      |+|..+..+...-..+..++++|++|+|++|.++......  +...+++|++|++++|. ++...  .+ ..+++|+.|.
T Consensus       131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~-~~l~~L~~L~  206 (768)
T 3rgz_A          131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDV--DV-SRCVNLEFLD  206 (768)
T ss_dssp             EECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCC--BC-TTCTTCCEEE
T ss_pred             EECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccC--Cc-ccCCcCCEEE
Confidence            3444444443333333357889999999999887533322  24578999999999864 44311  11 5678999999


Q ss_pred             EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ++.|.+...-   .     . ...+++|++|+|++|.++.... ..+.++++|++|+|++|...
T Consensus       207 Ls~n~l~~~~---~-----~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~  260 (768)
T 3rgz_A          207 VSSNNFSTGI---P-----F-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFV  260 (768)
T ss_dssp             CCSSCCCSCC---C-----B-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECCSSCCE
T ss_pred             CcCCcCCCCC---c-----c-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECCCCccc
Confidence            9877653211   0     1 2367888888888888775433 33457888888888887644

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.52  E-value=1.3e-09  Score=89.22  Aligned_cols=114  Identities=12%  Similarity=0.047  Sum_probs=81.2

Q ss_pred             HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      ...+++|+.|+|++|.|+.-.- .....+++|+.|+|++| .++.-.. .....+++|+.|.|+.|.+.....       
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~-------  122 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSN-RLENVQH-KMFKGLESLKTLMLRSNRITCVGN-------  122 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCCCCG-GGGTTCSSCCEEECTTSCCCCBCT-------
T ss_pred             hccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCC-ccCccCH-hHhcCCcCCCEEECCCCcCCeECH-------
Confidence            3478999999999998875221 12347899999999996 4654222 223567999999998887643211       


Q ss_pred             HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ..+ ..+++|++|+|++|.|+... ...+..+++|+.|+|+++...
T Consensus       123 ~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          123 DSF-IGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TSS-TTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred             hHc-CCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence            111 26899999999999977532 233457899999999998754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.52  E-value=9.3e-09  Score=93.96  Aligned_cols=109  Identities=17%  Similarity=0.168  Sum_probs=55.7

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      +++|+.|+|++|.++......+ ..+++|+.|+|++| .++......+...+++|+.|.|+.|.+.....         .
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~---------~  187 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---------Q  187 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---------C
T ss_pred             cCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccccc---------c
Confidence            4566666666666654211112 34667777777764 45554444454456677777776554421100         0


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                       ..+++|++|+|++|.|+.  +..-+..+++|+.|+|++|...
T Consensus       188 -~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          188 -VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             -CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC
T ss_pred             -ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCc
Confidence             034555666666555543  1111334555555555555433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.52  E-value=2.9e-09  Score=88.57  Aligned_cols=129  Identities=14%  Similarity=0.038  Sum_probs=86.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.|.+..++...-. ....+++|+.|+|++|.++... ......+++|+.|+|++| .++.- .......+++|+.|.|+
T Consensus        64 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           64 LNLDYNQLQTLSAG-VFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGN-QLKSL-PSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             EECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECC
T ss_pred             EECCCCcCCccCHh-HhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCC-cCCCc-ChhHhccCCcccEEECc
Confidence            34444444432222 2246889999999999887421 223357899999999996 56632 12223567999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+.....        .....+++|++|+|++|.|+... ...+.++++|+.|+|++|...
T Consensus       140 ~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          140 TNQLQSIPA--------GAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred             CCcCCccCH--------HHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCcee
Confidence            886642211        11236899999999999977422 123457899999999998765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.51  E-value=9.6e-10  Score=102.21  Aligned_cols=57  Identities=18%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCC-CCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP-NLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~-~L~~L~~  163 (240)
                      .+++|++|+|++|+++... ...+.++++|+.|+|++|...+.... + ..++ +|+.|..
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p~~-~-~~l~~~L~~l~l  552 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSKGI-L-QHFPKSLAFFNL  552 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEESC-G-GGSCTTCCEEEC
T ss_pred             ccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccCHh-H-hhhcccCcEEEc
Confidence            5566777777777655421 12234566677777777654432222 2 3333 3665554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.51  E-value=1.3e-09  Score=101.23  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      .+++|++|+|++|.++.... .....+++|+.|++++|
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSC
T ss_pred             ccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCC
Confidence            45566666666665543211 11224555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.49  E-value=1.4e-09  Score=92.83  Aligned_cols=131  Identities=21%  Similarity=0.197  Sum_probs=70.4

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.++.  +......+++|+.|++++| .++..........+++|+.|.++.|.+....        ..
T Consensus        76 ~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~  144 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NG  144 (306)
T ss_dssp             SCSCCCEEECCSCSEEE--EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECS--------TT
T ss_pred             cccccCEEECCCCcccc--ChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccc--------hh
Confidence            46777777777776542  1111235677777777775 3332211112345677777777655432110        01


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ....+++|++|+|++|.++...+...+..+++|++|+|++|.........+ ..+++|+.|..
T Consensus       145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L  206 (306)
T 2z66_A          145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNM  206 (306)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEEC
T ss_pred             hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEEC
Confidence            122567777777777776543333444567777777777775442222222 34455555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.49  E-value=4e-09  Score=98.05  Aligned_cols=63  Identities=14%  Similarity=0.055  Sum_probs=29.3

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   85 (240)
                      .+++|++|+|++|.++..........+++|+.|++++| .++......+ ..+++|+.|.++.|.
T Consensus       398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~  460 (606)
T 3t6q_A          398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLF-DGLPALQHLNLQGNH  460 (606)
T ss_dssp             TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC-CCBTTCTTTT-TTCTTCCEEECTTCB
T ss_pred             CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC-ccCCcCHHHH-hCCCCCCEEECCCCC
Confidence            45566666666665433222222234556666666654 2332211111 234555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.48  E-value=8.1e-09  Score=95.51  Aligned_cols=65  Identities=18%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccC
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      ..+++|++|+|++|.++......+ ..+++|+.|+|++| .++. ..+......+++|+.|.++.|.+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcC
Confidence            356777777777777665322222 35777777777775 4553 12222234567777777766654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.48  E-value=3.2e-09  Score=92.53  Aligned_cols=81  Identities=20%  Similarity=0.085  Sum_probs=53.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.+..++...-..+ ..+++|++|+|++|.++..... ....+++|++|+|++| .++.-. ......+++|+.|.++
T Consensus        57 L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~  132 (353)
T 2z80_A           57 LDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTIEED-SFSSLGSLEHLDLSYN-YLSNLS-SSWFKPLSSLTFLNLL  132 (353)
T ss_dssp             EECTTSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCSSCC-HHHHTTCTTCSEEECT
T ss_pred             EECCCCcCcccCHHHh-ccCCCCCEEECCCCccCccCHh-hcCCCCCCCEEECCCC-cCCcCC-HhHhCCCccCCEEECC
Confidence            5555555554332223 3689999999999988752212 2347899999999986 466422 2323567999999998


Q ss_pred             eccCC
Q 026286           83 MHPLD   87 (240)
Q Consensus        83 ~~~~~   87 (240)
                      .|.+.
T Consensus       133 ~n~l~  137 (353)
T 2z80_A          133 GNPYK  137 (353)
T ss_dssp             TCCCS
T ss_pred             CCCCc
Confidence            77653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.47  E-value=9.3e-09  Score=94.55  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=24.0

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .+++|++|+|++|.++...+...+.++++|++|++++|...
T Consensus       122 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            56667777777766553222233445667777777666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.46  E-value=2.6e-08  Score=93.83  Aligned_cols=110  Identities=14%  Similarity=0.046  Sum_probs=56.2

Q ss_pred             hcCccCcEEEecCCCCCCHH-----------------HHHHHH-hcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCC
Q 026286           45 GRLSAVTFLDLSYCSKIGAP-----------------ALEAIG-KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP  106 (240)
Q Consensus        45 ~~~~~L~~L~Ls~c~~it~~-----------------~l~~l~-~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~  106 (240)
                      .++++|++|+|++|. ++..                 ....++ +.+++|+.|.++.|.+...   +.    ..+ ..++
T Consensus       203 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~---~p----~~l-~~l~  273 (636)
T 4eco_A          203 MRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK---LP----TFL-KALP  273 (636)
T ss_dssp             GGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS---CC----TTT-TTCS
T ss_pred             hcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc---Ch----HHH-hcCC
Confidence            356777777777753 5552                 112221 2567777777766543210   00    011 2566


Q ss_pred             CCCEEEeeCcc-cCHHHHHHHHh------cCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          107 KLKRLEMAYHV-ISTEIVLKILS------SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       107 ~L~~L~L~~~~-it~~~l~~l~~------~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      +|++|+|++|+ ++...+..-+.      .+++|++|+|++|....+........+++|+.|..
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L  337 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC  337 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeC
Confidence            77777777776 66522322222      23667777776665443333111244555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.46  E-value=5e-09  Score=94.43  Aligned_cols=62  Identities=18%  Similarity=0.107  Sum_probs=26.2

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   85 (240)
                      ++++|+.|+|++|.|+.-.... ...+++|+.|+|++| .++.-. ......+++|+.|.|+.|.
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~  158 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDN-WLTVIP-SGAFEYLSKLRELWLRNNP  158 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSS-CCSBCC-TTTSSSCTTCCEEECCSCC
T ss_pred             CCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCC-cCCccC-hhhhcccCCCCEEECCCCC
Confidence            4455555555555444311111 124555555555553 233211 1112234555555554443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.45  E-value=1.4e-09  Score=93.63  Aligned_cols=37  Identities=22%  Similarity=0.391  Sum_probs=17.4

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      .+++|++|+|++|.++... ......+++|++|+|++|
T Consensus        99 ~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           99 KLTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GCTTCSEEEEEEECCEEEC-CGGGGGCTTCCEEECCSS
T ss_pred             cCCCCCEEECcCCeeCCcC-CHHHhCCCCCCEEeCCCC
Confidence            4555666666655544211 111224555555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.45  E-value=5.3e-08  Score=83.83  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=26.4

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|+|++|.|+..... .+.++++|+.|+|++|........  ...+++|+.|..
T Consensus       214 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~~L~l  270 (330)
T 1xku_A          214 GLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYL  270 (330)
T ss_dssp             TCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSSCCTT--TTTCSSCCEEEC
T ss_pred             CCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCccCChh--hccCCCcCEEEC
Confidence            445566666666554432111 123455666666666544322221  133445555444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.44  E-value=2.4e-09  Score=90.10  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=95.9

Q ss_pred             cccchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286            8 FLCADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus         8 ~~~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      +.|++..+..+-.. .++|++|+|++|.++.-....+ ..+++|+.|+|++| .++.-...++ ..+++|+.|.++.|.+
T Consensus        12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l   88 (276)
T 2z62_A           12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGNPI   88 (276)
T ss_dssp             EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTCCC
T ss_pred             EEecCCCccccCCCCCCCccEEECCCCcccccCHhHh-ccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCCcc
Confidence            34565555555443 3479999999998875332233 47899999999996 5664222223 4679999999987765


Q ss_pred             CCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC-hHHHHhcCCCCccccCC
Q 026286           87 DTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD-DKFMKGNFPNLKVLGPF  164 (240)
Q Consensus        87 ~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~-~~~l~~~~~~L~~L~~~  164 (240)
                      ....       ... ...+++|++|++++|.++...... +.++++|++|+|++|...... ...+ ..+++|+.|...
T Consensus        89 ~~~~-------~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~-~~l~~L~~L~Ls  157 (276)
T 2z62_A           89 QSLA-------LGA-FSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLS  157 (276)
T ss_dssp             CEEC-------TTT-TTTCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECC
T ss_pred             CccC-------hhh-hcCCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhh-ccCCCCCEEECC
Confidence            3211       111 237899999999999976422211 457899999999998765322 2222 566788877663

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.44  E-value=1.1e-08  Score=94.92  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=22.2

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                      .+++|++|+|++|.++...+...+.++++|++|+|++|..
T Consensus       126 ~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            4566666666666654322333344566666666666543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.43  E-value=1e-08  Score=96.64  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=61.1

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      ++++|++|+|++|.++..... ....+++|+.|+|++| .++.-. ......+++|++|.++.|.+....    ..   .
T Consensus        47 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~----~~---~  116 (680)
T 1ziw_A           47 RYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHN-ELSQLS-DKTFAFCTNLTELHLMSNSIQKIK----NN---P  116 (680)
T ss_dssp             GGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCC----SC---T
T ss_pred             CCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCC-ccCccC-hhhhccCCCCCEEECCCCccCccC----hh---H
Confidence            456666666666655432111 2235666666666664 333211 111234566666666555432110    00   0


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH-hcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK-GNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~-~~~~~L~~L~~  163 (240)
                      + ..+++|++|+|++|.++..... .+.++++|++|++++|.........+. ..+++|+.|..
T Consensus       117 ~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L  178 (680)
T 1ziw_A          117 F-VKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL  178 (680)
T ss_dssp             T-TTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred             c-cccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence            1 2456666666666665432111 123566666666666654433333221 12345555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.42  E-value=6.6e-09  Score=93.31  Aligned_cols=63  Identities=16%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      .+++|+.|+|++|.|+.-.... ...+++|+.|+|++| .++.-. ......+++|+.|.|+.|.+
T Consensus        86 ~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           86 HLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDN-RLTTIP-NGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             SCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSS-CCSSCC-TTTSCSCSSCCEEECCSCCC
T ss_pred             CCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCC-cCCeeC-HhHhhccccCceeeCCCCcc
Confidence            5666777777666655322122 235667777777764 344211 11123456677777665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.42  E-value=6.4e-08  Score=85.26  Aligned_cols=121  Identities=21%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      ++|+.|+|++|.+++.   .....+++|+.|+|++| .++......+ ..+++|+.|.++.|.+.....         ..
T Consensus       226 ~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---------~~  291 (390)
T 3o6n_A          226 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNRLVALNL---------YG  291 (390)
T ss_dssp             SSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECCSSCCCEEEC---------SS
T ss_pred             ccccEEECCCCCCccc---HHHcCCCCccEEECCCC-cCCCcChhHc-cccccCCEEECCCCcCcccCc---------cc
Confidence            4566666666655542   12345677777777775 3543222222 345677777776654422110         01


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ..+|+|++|+|++|+++.  +..-+..+++|+.|+|++|...+..    ...+++|+.|..
T Consensus       292 ~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l  346 (390)
T 3o6n_A          292 QPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTL  346 (390)
T ss_dssp             SCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEEC
T ss_pred             CCCCCCCEEECCCCccee--cCccccccCcCCEEECCCCccceeC----chhhccCCEEEc
Confidence            246777777777777652  2222335677777777776654332    244556666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.42  E-value=2.1e-08  Score=86.35  Aligned_cols=61  Identities=18%  Similarity=0.066  Sum_probs=29.4

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      ++|+.|+|++|.|+...... ...+++|++|+|++| .++.....++ ..+++|+.|.++.|.+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n~l  112 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINN-KISKISPGAF-APLVKLERLYLSKNQL  112 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSSCC
T ss_pred             CCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCCEEECCCCcC
Confidence            45666666666554321111 235566666666654 3432211122 2445666666655543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.41  E-value=8.4e-09  Score=90.46  Aligned_cols=116  Identities=23%  Similarity=0.163  Sum_probs=56.7

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|+.|+|++|.|+.-.. .....+++|+.|+|++| +++.-. ......+++|+.|.|+.|.+....       ..+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~-------~~~  131 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSN-HLHTLD-EFLFSDLQALEVLLLYNNHIVVVD-------RNA  131 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEEC-------TTT
T ss_pred             cccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCC-cCCcCC-HHHhCCCcCCCEEECCCCcccEEC-------HHH
Confidence            45566666666665543111 11234566666666664 344211 111234566666666655442110       001


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHH--HhcCCcccEEeccCCCCCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKI--LSSCALLEFLDLRGCWDVKLD  147 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l--~~~c~~Le~LdL~~C~~v~~~  147 (240)
                       ...+++|++|+|++|.|+.-....+  +..+++|+.|+|++|....+.
T Consensus       132 -~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          132 -FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             -TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             -hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence             1256777777777777654211111  134677777777776554433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.41  E-value=2.3e-09  Score=104.09  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=36.2

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHh-cCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG-NFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~-~~~~L~~L~~  163 (240)
                      .+++|++|+|++|.++.......+.++++|++|+|++|.........+.. ..++|+.|..
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL  181 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence            67888888888888765433334567888888888887654322222110 1156666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.41  E-value=5.5e-07  Score=82.47  Aligned_cols=113  Identities=16%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHH--HhcCCCCcEEEEeeccCCCCCccCChHH-
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI--GKHCKLLVVLCRNMHPLDTADKLSQDDE-   97 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l--~~~c~~L~~L~L~~~~~~~~~~~~~d~~-   97 (240)
                      ..++|+.|+|++|.++. .-..+...+++|+.|+|++| .++.......  ...+++|+.|.++.|.+.       .-. 
T Consensus       308 ~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~~~~  378 (549)
T 2z81_A          308 LLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLR-------SMQK  378 (549)
T ss_dssp             HSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCC-------CHHH
T ss_pred             hcccceEEEeccCcccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCccc-------cccc
Confidence            45678888888887653 11234457899999999986 5776554332  346789999999877542       211 


Q ss_pred             HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .......+++|++|+|++|+++  .+...+..+++|++|+|++|...
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFH--PMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCC--CCCSCCCCCTTCCEEECTTSCCS
T ss_pred             chhhhhcCCCCCEEECCCCCCc--cCChhhcccccccEEECCCCCcc
Confidence            1123457889999999999877  23333445678888888887643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.40  E-value=1.6e-08  Score=86.13  Aligned_cols=119  Identities=18%  Similarity=0.168  Sum_probs=68.2

Q ss_pred             ccchhcHHHHHh-CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286            9 LCADVDLFPGSA-SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   87 (240)
Q Consensus         9 ~~tD~~L~~i~~-~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~   87 (240)
                      .|+...+..+-. -.++|+.|+|++|.|+...... ...+++|+.|+|++| .++.-.  .. ..+++|+.|.++.|.+.
T Consensus        16 ~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~--~~-~~l~~L~~L~Ls~N~l~   90 (290)
T 1p9a_G           16 NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLAT-LMPYTRLTQLNLDRA-ELTKLQ--VD-GTLPVLGTLDLSHNQLQ   90 (290)
T ss_dssp             ECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGG-GTTCTTCCEEECTTS-CCCEEE--CC-SCCTTCCEEECCSSCCS
T ss_pred             ECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHH-hhcCCCCCEEECCCC-ccCccc--CC-CCCCcCCEEECCCCcCC
Confidence            344444444432 2468999999999886532222 347899999999996 466421  11 57899999999888664


Q ss_pred             CCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286           88 TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus        88 ~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      ....         ....+++|++|+|++|.|+... ...+.++++|++|+|++|.
T Consensus        91 ~l~~---------~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~L~L~~N~  135 (290)
T 1p9a_G           91 SLPL---------LGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQELYLKGNE  135 (290)
T ss_dssp             SCCC---------CTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCEEECTTSC
T ss_pred             cCch---------hhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCEEECCCCC
Confidence            2111         1124455555555555544211 0112344455555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.40  E-value=2.5e-09  Score=98.38  Aligned_cols=149  Identities=14%  Similarity=0.070  Sum_probs=91.9

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.++...-.  ...+++|++|+|++|.++..........+++|+.|++++|. ++... ......+++|+.|.++
T Consensus       378 L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~  453 (570)
T 2z63_A          378 LDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMA  453 (570)
T ss_dssp             EECCSCSEEEEEEE--EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECT
T ss_pred             EECCCCcccccccc--ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECc
Confidence            44455444432211  34688999999999866542222234578999999999874 44322 2223467899999997


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      .|.+..       .........+++|++|+|++|.++.... ..+.++++|++|+|++|.........+ ..+++|+.|.
T Consensus       454 ~n~l~~-------~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~  524 (570)
T 2z63_A          454 GNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVPDGIF-DRLTSLQKIW  524 (570)
T ss_dssp             TCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEE
T ss_pred             CCcCcc-------ccchhhhhcccCCCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCCHHHh-hcccCCcEEE
Confidence            665421       0011112367899999999998775322 234478899999999886553333222 5667777776


Q ss_pred             CC
Q 026286          163 PF  164 (240)
Q Consensus       163 ~~  164 (240)
                      ..
T Consensus       525 l~  526 (570)
T 2z63_A          525 LH  526 (570)
T ss_dssp             CC
T ss_pred             ec
Confidence            63

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.39  E-value=1.2e-08  Score=89.94  Aligned_cols=137  Identities=19%  Similarity=0.086  Sum_probs=94.5

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.+++.  . ....+++|++|+|++|.++...... ...+++|+.|+|++| .++.  +......+|+|+.|.++
T Consensus       231 L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          231 LKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHP-FVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             EECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGG-GTTCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECC
T ss_pred             EECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhH-ccccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECC
Confidence            45555555553  2 3347899999999999887532223 347899999999996 4654  22223567999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      .|.+...    . ..   + ..+++|++|+|++|.|+...    +..+++|+.|+|++|...   ...+...+..++...
T Consensus       304 ~n~l~~~----~-~~---~-~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~---~~~~~~~~~~~~~~~  367 (390)
T 3o6n_A          304 HNHLLHV----E-RN---Q-PQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSHNDWD---CNSLRALFRNVARPA  367 (390)
T ss_dssp             SSCCCCC----G-GG---H-HHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCSSCEE---HHHHHHHTTTCCTTT
T ss_pred             CCcceec----C-cc---c-cccCcCCEEECCCCccceeC----chhhccCCEEEcCCCCcc---chhHHHHHHHHHhhc
Confidence            8866421    1 11   2 26799999999999987643    567899999999998744   334445555555433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.38  E-value=6.3e-09  Score=89.50  Aligned_cols=110  Identities=18%  Similarity=0.196  Sum_probs=59.9

Q ss_pred             CCCcEEEeeCCCCCH--HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           23 GSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        23 ~~L~~L~L~~~~itd--~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .++++|+|+++.++.  . +......+++|++|+|++++.++......+ ..+++|+.|.++.|.+...   +.    ..
T Consensus        50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~---~p----~~  120 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGA---IP----DF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEE---CC----GG
T ss_pred             ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCc---CC----HH
Confidence            467777777776653  2 222334677777777774334443322233 3467777777766654210   00    01


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                      + ..+++|++|+|++|.|+.. +...+.++++|++|+|++|..
T Consensus       121 ~-~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l  161 (313)
T 1ogq_A          121 L-SQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRI  161 (313)
T ss_dssp             G-GGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCC
T ss_pred             H-hCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcc
Confidence            1 2566777777777665431 112234566677777766653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.38  E-value=9.2e-09  Score=90.19  Aligned_cols=143  Identities=21%  Similarity=0.146  Sum_probs=93.2

Q ss_pred             cchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCC
Q 026286           10 CADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT   88 (240)
Q Consensus        10 ~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~   88 (240)
                      |+...|..|-.. .+.++.|+|++|.|+.-....+...+++|+.|+|++| .++.-...++ ..+++|+.|.|+.|.+..
T Consensus        25 c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N~l~~  102 (361)
T 2xot_A           25 CSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSNHLHT  102 (361)
T ss_dssp             CCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCCE
T ss_pred             eCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCCcCCc
Confidence            444444444332 3469999999998875322222227899999999996 5664322223 467999999998886532


Q ss_pred             CCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH--hcCCCCccccC
Q 026286           89 ADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLGP  163 (240)
Q Consensus        89 ~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~--~~~~~L~~L~~  163 (240)
                      ...        .....+++|++|+|++|.|+.... ..+.++++|+.|+|++|....+....+.  ..+++|+.|..
T Consensus       103 ~~~--------~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A          103 LDE--------FLFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             ECT--------TTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CCH--------HHhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            110        112378999999999999874321 2345789999999999987655554331  34677777655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.38  E-value=8.1e-09  Score=95.65  Aligned_cols=115  Identities=23%  Similarity=0.120  Sum_probs=82.6

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      .++++|++|+|++|.|+.-. ......+++|++|+|++| +++.-. ......+++|+.|.++.|.+.....    .   
T Consensus        73 ~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l~~----~---  142 (635)
T 4g8a_A           73 FSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLA-LGAFSGLSSLQKLVAVETNLASLEN----F---  142 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC-GGGGTTCTTCCEEECTTSCCCCSTT----C---
T ss_pred             hCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCC-cCCCCC-HHHhcCCCCCCEEECCCCcCCCCCh----h---
Confidence            47899999999999886411 122357899999999996 465421 1223568999999998776532211    0   


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  145 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~  145 (240)
                      + ...+++|++|+|++|.|+...+.....++++|++|+|++|....
T Consensus       143 ~-~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          143 P-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             C-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             h-hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            1 13789999999999998754455556688999999999987543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.37  E-value=3.5e-08  Score=92.00  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=85.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.|.+..++.  +.. ...+++|+.|+|++|.|+  .+......+++|+.|+|++| .++.  +.. ...+++|+.|.|+
T Consensus       446 L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp~-l~~l~~L~~L~Ls  516 (567)
T 1dce_A          446 LHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDN-ALEN--VDG-VANLPRLQELLLC  516 (567)
T ss_dssp             EECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECC
T ss_pred             EEecCCCCCC--CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCC-CCCC--Ccc-cCCCCCCcEEECC
Confidence            5566666554  333 346889999999999887  34444558999999999996 5664  333 3568999999999


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHH--HHHHHHhcCCcccEEec
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDL  138 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~--~l~~l~~~c~~Le~LdL  138 (240)
                      .|.+.....      ...+ ..+++|+.|+|++|.|+..  .+..+...+|+|+.|++
T Consensus       517 ~N~l~~~~~------p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAA------IQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSST------TGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCC------cHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            886632210      1122 3789999999999997653  34456667899999975

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.36  E-value=6.9e-08  Score=90.12  Aligned_cols=127  Identities=17%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ..+++|+.|+|++|.|+......+ ..+++|+.|+|++|. ++.-.. .....+++|+.|.|+.|.+.....        
T Consensus        72 ~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~--------  140 (597)
T 3oja_B           72 DSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNA-IRYLPP-HVFQNVPLLTVLVLERNDLSSLPR--------  140 (597)
T ss_dssp             HHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCCCT--------
T ss_pred             ccCCCCcEEECCCCCCCCCChHHh-cCCCCCCEEECCCCc-CCCCCH-HHHcCCCCCCEEEeeCCCCCCCCH--------
Confidence            356777777777776654211122 357777777777753 443211 122456777777776665431110        


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      .+...+++|++|+|++|.|+.... ..+.++++|++|+|++|......    ...+++|+.|.
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~  198 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHAN  198 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEE
T ss_pred             HHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhh
Confidence            112356777777777777653221 12346777777777777544222    13445555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.35  E-value=2.9e-08  Score=79.58  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=75.3

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|++|.|++|.|+.  +......+++|+.|+|++| .++.-...+ ...+++|+.|.|+.|.+.....    .   + 
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~----~---~-   97 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQS-FSNMTQLLTLILSYNRLRCIPP----R---T-   97 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSCCCBCCT----T---T-
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCC-cCCEeCHhH-ccCCCCCCEEECCCCccCEeCH----H---H-
Confidence            4589999999998763  3334457899999999986 465422122 2457899999998886643211    0   1 


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ...+++|++|+|++|.|+.-. ...+..+++|+.|+|+++...
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             hCCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence            236789999999999977311 123456889999999887654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.35  E-value=3.4e-08  Score=84.90  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.+..++...-..+ ..+++|+.|+|++|.++......+...+++|+.|+|++| .++.-  ... ..+++|+.|.++
T Consensus       125 L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~l~~L~~L~Ls  199 (317)
T 3o53_A          125 IYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VVFAKLKTLDLS  199 (317)
T ss_dssp             EECCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CCCTTCCEEECC
T ss_pred             EECCCCCCCCccchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-cccccCCEEECC
Confidence            3444544443221112 357889999999998876555556567899999999986 45542  111 137889999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+...    ...     ...+++|++|+|++|.|+.  +...+..+++|+.|+|++|...
T Consensus       200 ~N~l~~l----~~~-----~~~l~~L~~L~L~~N~l~~--l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          200 SNKLAFM----GPE-----FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SSCCCEE----CGG-----GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCcCCcc----hhh-----hcccCcccEEECcCCcccc--hhhHhhcCCCCCEEEccCCCcc
Confidence            7765321    111     2367889999999998773  3334567788999999888755

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.34  E-value=2.1e-07  Score=84.35  Aligned_cols=100  Identities=17%  Similarity=0.099  Sum_probs=52.6

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|.++.-  .  ...+++|+.|++++| .++.-   . ...+++|+.|.++.|.+...          .
T Consensus        62 ~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N-~l~~~---~-~~~l~~L~~L~L~~N~l~~l----------~  122 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSN-KLTNL---D-VTPLTKLTYLNCDTNKLTKL----------D  122 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSS-CCSCC---C-CTTCTTCCEEECCSSCCSCC----------C
T ss_pred             ccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCC-CCcee---e-cCCCCcCCEEECCCCcCCee----------c
Confidence            456666666666655441  1  235666666666664 34432   1 23456666666665543211          0


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                       ...+++|++|++++|.++...    +.++++|+.|++++|..+
T Consensus       123 -~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          123 -VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             -CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCC
T ss_pred             -CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcc
Confidence             125566666666666655421    335566666666655433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.34  E-value=8.9e-08  Score=93.44  Aligned_cols=130  Identities=14%  Similarity=0.105  Sum_probs=83.2

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCH-HHHHHHH------hcCCCCcEEEEeeccCCCCCccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIG------KHCKLLVVLCRNMHPLDTADKLS   93 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~------~~c~~L~~L~L~~~~~~~~~~~~   93 (240)
                      ++++|+.|+|++|.+.... ......+++|+.|+|++|..++. .....++      ..+|+|+.|.++.|.+..    +
T Consensus       489 ~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~----i  563 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE----F  563 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB----C
T ss_pred             cCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc----c
Confidence            6788999999998654422 23344788999999998644776 3333333      345689999998776531    1


Q ss_pred             ChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCC-CccccC
Q 026286           94 QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN-LKVLGP  163 (240)
Q Consensus        94 ~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~-L~~L~~  163 (240)
                      ..  . .....+++|++|+|++|.|+  .+. .+.++++|+.|+|++|....+... + ..+++ |+.|..
T Consensus       564 p~--~-~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~-l-~~l~~~L~~L~L  626 (876)
T 4ecn_A          564 PA--S-ASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPED-F-CAFTDQVEGLGF  626 (876)
T ss_dssp             CC--H-HHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTT-S-CEECTTCCEEEC
T ss_pred             CC--h-hhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHH-H-hhccccCCEEEC
Confidence            11  0 12237788888888888877  343 455778888888888765533322 1 34455 666655

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.33  E-value=9.9e-09  Score=93.78  Aligned_cols=126  Identities=17%  Similarity=0.117  Sum_probs=88.6

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.++...-..+ ..+++|+.|+|++|.++......+...+++|+.|+|++|. ++..  ..+ ..+++|+.|.|+
T Consensus       125 L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~~-~~l~~L~~L~Ls  199 (487)
T 3oja_A          125 IYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFAKLKTLDLS  199 (487)
T ss_dssp             EECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCTTCCEEECC
T ss_pred             EECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccc--ccc-ccCCCCCEEECC
Confidence            4455555443221122 3578999999999998875555666678999999999974 6643  112 247999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .|.+....    .    . ...+++|+.|+|++|.|+.  +...+..+++|+.|+|++|...
T Consensus       200 ~N~l~~~~----~----~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          200 SNKLAFMG----P----E-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             SSCCCEEC----G----G-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCCCCCCC----H----h-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCc
Confidence            88664211    1    1 2377999999999999874  4444567899999999998755

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.33  E-value=8.4e-09  Score=82.54  Aligned_cols=112  Identities=16%  Similarity=0.093  Sum_probs=77.7

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|++|.|++|.|+.-....+...+++|+.|+|++| .++.-...++ ..+++|+.|.|+.|.+.....        ..
T Consensus        28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~--------~~   97 (192)
T 1w8a_A           28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQLGENKIKEISN--------KM   97 (192)
T ss_dssp             CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSCCCCEECS--------SS
T ss_pred             CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEECCCCcCCccCH--------HH
Confidence            3489999999998765222223457999999999996 5664322233 457999999998886642211        01


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ...+++|++|+|++|.|+... ...+..+++|++|+|+++.-.
T Consensus        98 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             hcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCcc
Confidence            126799999999999977522 223457899999999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.33  E-value=2.4e-08  Score=78.46  Aligned_cols=111  Identities=16%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|++|.|++|.++.- .......+++|+.|+|++| .++.- .......+++|+.|.++.|.+.....        ..
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~   95 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENKLQSLPN--------GV   95 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCT--------TT
T ss_pred             CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCCccccCH--------HH
Confidence            46899999999877631 1222346889999999986 46531 11223467899999998776542111        11


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ...+++|++|+|++|.|+.- ...++..+++|++|+|++|...
T Consensus        96 ~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           96 FDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             TTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCee
Confidence            23678999999999987731 1233457889999999988754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.32  E-value=6.1e-09  Score=101.08  Aligned_cols=40  Identities=18%  Similarity=0.136  Sum_probs=16.8

Q ss_pred             cCCCCCEEEeeCcccCHHHHHH-HHhcCCcccEEeccCCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~-l~~~c~~Le~LdL~~C~~  143 (240)
                      .+++|++|+|++|.++...+.. .+.++++|++|+|++|..
T Consensus        95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l  135 (844)
T 3j0a_A           95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI  135 (844)
T ss_dssp             SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCC
T ss_pred             CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcc
Confidence            3445555555555443211111 123444555555555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.29  E-value=6.1e-08  Score=89.58  Aligned_cols=128  Identities=20%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             CCCCCcEEEeeCCCCCH-HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           21 SAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd-~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      .+++|+.|+|++|.++. ..+......+++|+.|+|++| .++..........+++|+.|.++.|.+.       .    
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------~----  442 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLT-------G----  442 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCC-------G----
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCC-------c----
Confidence            55666677776666653 112233345666777777664 3432111112234566666666655432       1    


Q ss_pred             HHHhcC-CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          100 AIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       100 ~i~~~~-~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+...+ ++|++|+|++|+|+  .+..-+.++++|++|+|++|...+..... ...+++|+.|..
T Consensus       443 ~~~~~l~~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~L~l  504 (562)
T 3a79_B          443 SVFRCLPPKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDGV-FDRLTSLQYIWL  504 (562)
T ss_dssp             GGGSSCCTTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTTS-TTTCTTCCCEEC
T ss_pred             chhhhhcCcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHHH-HhcCCCCCEEEe
Confidence            011123 46777777777665  22222235667777777766554333321 134455555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.27  E-value=3.4e-08  Score=92.16  Aligned_cols=106  Identities=20%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      ++|+.|+|++|.+++.   .....+++|+.|+|++| .++......+ ..+++|+.|.|+.|.+.....         ..
T Consensus       232 ~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l~~---------~~  297 (597)
T 3oja_B          232 VELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNRLVALNL---------YG  297 (597)
T ss_dssp             SCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTSCCCEEEC---------SS
T ss_pred             CCCCEEECCCCCCCCC---hhhccCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCCCCCCCCc---------cc
Confidence            4566666666655541   12234566666666654 3443222222 234556666655443321100         01


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ..+|+|++|+|++|.++.  +...+..+++|+.|+|++|...
T Consensus       298 ~~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~  337 (597)
T 3oja_B          298 QPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIV  337 (597)
T ss_dssp             SCCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCC
T ss_pred             ccCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCC
Confidence            134555555555555441  2211234455555555555433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=1.5e-07  Score=91.83  Aligned_cols=126  Identities=14%  Similarity=0.044  Sum_probs=79.9

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCC-CCHHHHHH-HH------hcCccCcEEEecCCCCCCHHHHHH--HHhc
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSE-MSDSIVAQ-IA------GRLSAVTFLDLSYCSKIGAPALEA--IGKH   72 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~-itd~~l~~-l~------~~~~~L~~L~Ls~c~~it~~~l~~--l~~~   72 (240)
                      |.|.++..+...- ....++++|+.|+|++|. ++...+.. +.      ..+|+|+.|+|++| .++ . +..  ....
T Consensus       496 L~Ls~N~l~~~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-~-ip~~~~l~~  571 (876)
T 4ecn_A          496 VELYNCPNMTQLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE-E-FPASASLQK  571 (876)
T ss_dssp             EEEESCTTCCSCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC-B-CCCHHHHTT
T ss_pred             EECcCCCCCccCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC-c-cCChhhhhc
Confidence            3444444333222 223478899999999997 88722322 22      23459999999996 466 2 322  3356


Q ss_pred             CCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCc-ccEEeccCCCCC
Q 026286           73 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCWDV  144 (240)
Q Consensus        73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~-Le~LdL~~C~~v  144 (240)
                      +++|+.|.|+.|.+..    +.     . ...+++|++|+|++|.++  .+..-+.++++ |+.|+|++|...
T Consensus       572 L~~L~~L~Ls~N~l~~----lp-----~-~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          572 MVKLGLLDCVHNKVRH----LE-----A-FGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             CTTCCEEECTTSCCCB----CC-----C-CCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCccc----ch-----h-hcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC
Confidence            7899999998776531    11     1 136678888888888876  34333556677 888888877644

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.27  E-value=1.8e-08  Score=82.95  Aligned_cols=127  Identities=13%  Similarity=0.038  Sum_probs=77.1

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee-ccCCCCCccCChHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAI  101 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~~~~~~d~~~~~i  101 (240)
                      ++|+.|+|++|+|+.-.-. ....+++|+.|+|++|..++.-... ....+++|+.|.++. |.+.....        ..
T Consensus        31 ~~l~~L~l~~n~l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~--------~~  100 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSH-AFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP--------DA  100 (239)
T ss_dssp             TTCCEEEEESCCCSEECTT-TTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT--------TS
T ss_pred             CcccEEEEeCCcceEECHH-HccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH--------HH
Confidence            4789999999877642211 2346889999999986435432111 224678899999976 65532110        01


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCccc---EEeccCCCCCC-CChHHHHhcCCCCc-cccC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLE---FLDLRGCWDVK-LDDKFMKGNFPNLK-VLGP  163 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le---~LdL~~C~~v~-~~~~~l~~~~~~L~-~L~~  163 (240)
                      ...+++|++|+|++|.++.  +.. +..+++|+   +|++++|..++ .....+ ..+++|+ .|..
T Consensus       101 f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l  163 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKL  163 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEEC
T ss_pred             hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccc-cchhcceeEEEc
Confidence            1257888888888888664  222 44677777   88888884442 222112 3455666 5554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.26  E-value=2.3e-08  Score=94.27  Aligned_cols=15  Identities=33%  Similarity=0.412  Sum_probs=8.3

Q ss_pred             CCCCCcEEEeeCCCC
Q 026286           21 SAGSLQTLRLPRSEM   35 (240)
Q Consensus        21 ~~~~L~~L~L~~~~i   35 (240)
                      .+++|+.|+|++|.+
T Consensus       403 ~l~~L~~L~L~~N~l  417 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEI  417 (680)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             CCCCCCEEeCCCCcC
Confidence            455555555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.26  E-value=5.9e-07  Score=81.36  Aligned_cols=34  Identities=12%  Similarity=0.202  Sum_probs=17.7

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      ++++|++|+|++|.++.  +.  ...+++|+.|++++|
T Consensus       104 ~l~~L~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A          104 PLTKLTYLNCDTNKLTK--LD--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             TCTTCCEEECCSSCCSC--CC--CTTCTTCCEEECTTS
T ss_pred             CCCcCCEEECCCCcCCe--ec--CCCCCcCCEEECCCC
Confidence            45566666666665443  11  234555555555553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.25  E-value=2e-08  Score=82.60  Aligned_cols=112  Identities=13%  Similarity=0.012  Sum_probs=69.2

Q ss_pred             hCCCCCcEEEeeCCC-CCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           20 ASAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~-itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      ..+++|++|+|++|. ++.-.-. ....+++|+.|+|++|+.++.-.. .....+++|+.|.++.|.+...    ..   
T Consensus        52 ~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~l~~l----p~---  122 (239)
T 2xwt_C           52 SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKMF----PD---  122 (239)
T ss_dssp             TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEECCCSC----CC---
T ss_pred             cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCCCccc----cc---
Confidence            368899999999996 7642111 224689999999998556664221 2234678999999988765321    11   


Q ss_pred             HHHHhcCCCCC---EEEeeCc-ccCHHHHHHHHhcCCccc-EEeccCCCCC
Q 026286           99 NAIASTMPKLK---RLEMAYH-VISTEIVLKILSSCALLE-FLDLRGCWDV  144 (240)
Q Consensus        99 ~~i~~~~~~L~---~L~L~~~-~it~~~l~~l~~~c~~Le-~LdL~~C~~v  144 (240)
                         ...+++|+   +|++++| .++.-.. ..+.++++|+ .|++++|...
T Consensus       123 ---~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          123 ---LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             ---CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred             ---cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence               12455555   7777777 5543111 1133567777 7777766543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.20  E-value=8.2e-08  Score=90.40  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=22.1

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  141 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C  141 (240)
                      .+++|++|+|++|.|+.  +..-+.++++|+.|+|++|
T Consensus       511 ~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             TCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSC
T ss_pred             cCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCC
Confidence            56677777777777664  3333445677777777543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.11  E-value=3.2e-07  Score=87.89  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=76.8

Q ss_pred             HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      ...+++|+.|+|++|.|+.  +..-...+++|+.|+|++| .++ .....+ ..+++|+.|.|+.|.+...    ..   
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~l----p~---  287 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLT-ELPAEI-KNLSNLRVLDLSHNRLTSL----PA---  287 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCS-CCCGGG-GGGTTCCEEECTTSCCSSC----CS---
T ss_pred             hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCc-ccChhh-hCCCCCCEEeCcCCcCCcc----Ch---
Confidence            3467889999999997652  2222237899999999986 566 222233 5679999999988876421    11   


Q ss_pred             HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                       .+ ..+++|++|+|++|.|+  .+..-+.++++|++|+|++|...
T Consensus       288 -~~-~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          288 -EL-GSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             -SG-GGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             -hh-cCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccC
Confidence             12 36889999999999886  33333567899999999998755

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.06  E-value=5e-07  Score=77.82  Aligned_cols=107  Identities=16%  Similarity=0.038  Sum_probs=62.8

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|+.|+|++|.|+.-... ....+++|++|+|++| .++.....++ ..+++|+.|.++.|.+......         
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~l~~l~~~---------  120 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNN-KISKIHEKAF-SPLRKLQKLYISKNHLVEIPPN---------  120 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSS-CCCEECGGGS-TTCTTCCEEECCSSCCCSCCSS---------
T ss_pred             CCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCC-ccCccCHhHh-hCcCCCCEEECCCCcCCccCcc---------
Confidence            35788888888877642111 2346788888888875 4554322233 4568888888877655321111         


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                        ..++|++|++++|.|+... ...+.++++|++|++++|..
T Consensus       121 --~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          121 --LPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             --CCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCCC
T ss_pred             --ccccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCcc
Confidence              1256777777777655311 12234567777777766654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=3.8e-06  Score=70.94  Aligned_cols=87  Identities=23%  Similarity=0.241  Sum_probs=39.7

Q ss_pred             HhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC-CC-
Q 026286           70 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK-LD-  147 (240)
Q Consensus        70 ~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~-~~-  147 (240)
                      ...+|+|+.|.|+.|.+...      .++..+...+|+|+.|+|++|.|+...-..-++++ +|+.|+|++|.... .. 
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l------~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCC------GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS
T ss_pred             HhhCCCCCEEECCCCCCCCC------ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCc
Confidence            34456666666655543211      11112223556666666666665543111112222 56666666655331 00 


Q ss_pred             --h--HHHHhcCCCCccccC
Q 026286          148 --D--KFMKGNFPNLKVLGP  163 (240)
Q Consensus       148 --~--~~l~~~~~~L~~L~~  163 (240)
                        .  ..+...+|+|+.|..
T Consensus       239 ~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          239 QSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHHHHCTTCCEESS
T ss_pred             chhHHHHHHHHCcccCeECC
Confidence              0  123456666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.03  E-value=8.8e-08  Score=82.59  Aligned_cols=129  Identities=12%  Similarity=0.031  Sum_probs=85.2

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|++|+|++|.++......+ ..+++|+.|+|++| .++......+ ..+++|+.|.++.|.+...    ..    . 
T Consensus       192 ~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l----p~----~-  259 (332)
T 2ft3_A          192 PETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHN-QIRMIENGSL-SFLPTLRELHLDNNKLSRV----PA----G-  259 (332)
T ss_dssp             CSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSS-CCCCCCTTGG-GGCTTCCEEECCSSCCCBC----CT----T-
T ss_pred             cCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCC-cCCcCChhHh-hCCCCCCEEECCCCcCeec----Ch----h-
Confidence            3689999999998765322223 36899999999996 4554222223 4679999999988866421    11    1 


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhc-----CCcccEEeccCCCCC--CCChHHHHhcCCCCccccC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGCWDV--KLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~-----c~~Le~LdL~~C~~v--~~~~~~l~~~~~~L~~L~~  163 (240)
                      ...+++|++|+|++|.|+......+...     .+.|+.|+++++...  ......+ ..+++|+.+..
T Consensus       260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~-~~l~~L~~l~l  327 (332)
T 2ft3_A          260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQF  327 (332)
T ss_dssp             GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG-TTBCCSTTEEC
T ss_pred             hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccc-cccchhhhhhc
Confidence            2378999999999999876544333221     467999999998754  1222222 44566665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.02  E-value=6.8e-08  Score=77.20  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             CcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286           25 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  104 (240)
Q Consensus        25 L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~  104 (240)
                      .+.|++++++++.  +..  ...++|+.|+|++| .++.-....+...+++|+.|.|+.|.+....       ..+ ...
T Consensus        10 ~~~l~~s~~~l~~--ip~--~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~-~~~   76 (192)
T 1w8a_A           10 GTTVDCTGRGLKE--IPR--DIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-------PNA-FEG   76 (192)
T ss_dssp             TTEEECTTSCCSS--CCS--CCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-------TTT-TTT
T ss_pred             CCEEEcCCCCcCc--Ccc--CCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcC-------HhH-cCC
Confidence            3788888887643  111  12458999999996 5654222223456799999999888664221       011 237


Q ss_pred             CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      +++|++|+|++|+|+.... ..+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus        77 l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L  133 (192)
T 1w8a_A           77 ASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNL  133 (192)
T ss_dssp             CTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEEC
T ss_pred             cccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEe
Confidence            8999999999999875322 224478999999999987653333222 45667777765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.02  E-value=2.3e-06  Score=80.56  Aligned_cols=77  Identities=14%  Similarity=-0.017  Sum_probs=41.6

Q ss_pred             ccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHH
Q 026286           48 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL  127 (240)
Q Consensus        48 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~  127 (240)
                      ++|+.|+|++| .++.     +...+++|+.|.++.|.+...    .        ..+++|++|+|++|.|+  .+...+
T Consensus       221 ~~L~~L~Ls~N-~L~~-----lp~~l~~L~~L~Ls~N~L~~l----p--------~~~~~L~~L~Ls~N~L~--~lp~~l  280 (622)
T 3g06_A          221 SGLKELIVSGN-RLTS-----LPVLPSELKELMVSGNRLTSL----P--------MLPSGLLSLSVYRNQLT--RLPESL  280 (622)
T ss_dssp             TTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCC----C--------CCCTTCCEEECCSSCCC--SCCGGG
T ss_pred             CCCCEEEccCC-ccCc-----CCCCCCcCcEEECCCCCCCcC----C--------cccccCcEEeCCCCCCC--cCCHHH
Confidence            44555555553 2332     113445566666655543211    1        14567777777777766  233335


Q ss_pred             hcCCcccEEeccCCCCC
Q 026286          128 SSCALLEFLDLRGCWDV  144 (240)
Q Consensus       128 ~~c~~Le~LdL~~C~~v  144 (240)
                      .++++|+.|+|++|...
T Consensus       281 ~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             GGSCTTCEEECCSCCCC
T ss_pred             hhccccCEEEecCCCCC
Confidence            56777777777776644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.02  E-value=3.8e-07  Score=71.45  Aligned_cols=124  Identities=16%  Similarity=0.139  Sum_probs=82.7

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  103 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~  103 (240)
                      +.+.+++.+++++.  +.  ....++|+.|++++| .++.- .......+++|+.|.++.|.+....    .    ....
T Consensus         8 ~~~~l~~~~~~l~~--~p--~~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~----~----~~~~   73 (177)
T 2o6r_A            8 SGTEIRCNSKGLTS--VP--TGIPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQIQSLP----D----GVFD   73 (177)
T ss_dssp             ETTEEECCSSCCSS--CC--TTCCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSCCCCCC----T----TTTT
T ss_pred             CCCEEEecCCCCcc--CC--CCCCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCcceEeC----h----hHcc
Confidence            36788888887654  11  123579999999996 46532 1222356799999999888664211    1    1123


Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|++|+|++|.|+... ...+.++++|++|+|++|.........+ ..+++|+.|..
T Consensus        74 ~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~l  131 (177)
T 2o6r_A           74 KLTKLTILYLHENKLQSLP-NGVFDKLTQLKELALDTNQLKSVPDGIF-DRLTSLQKIWL  131 (177)
T ss_dssp             TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEEC
T ss_pred             CCCccCEEECCCCCccccC-HHHhhCCcccCEEECcCCcceEeCHHHh-cCCcccCEEEe
Confidence            7899999999999987421 2234578999999999996654443222 45677777766

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.99  E-value=5.1e-06  Score=78.20  Aligned_cols=72  Identities=13%  Similarity=0.013  Sum_probs=45.9

Q ss_pred             CCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH
Q 026286           73 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  152 (240)
Q Consensus        73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~  152 (240)
                      +++|+.|.++.|.+..            +...+++|++|+|++|.|+.  +..   .+++|+.|+|++|....+... + 
T Consensus       220 ~~~L~~L~Ls~N~L~~------------lp~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~L~~lp~~-l-  280 (622)
T 3g06_A          220 PSGLKELIVSGNRLTS------------LPVLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTRLPES-L-  280 (622)
T ss_dssp             CTTCCEEECCSSCCSC------------CCCCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCCSCCGG-G-
T ss_pred             CCCCCEEEccCCccCc------------CCCCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCCCCcCCHH-H-
Confidence            3566666666554321            11356888888888888763  221   568899999988865544432 2 


Q ss_pred             hcCCCCccccC
Q 026286          153 GNFPNLKVLGP  163 (240)
Q Consensus       153 ~~~~~L~~L~~  163 (240)
                      ..+++|+.|..
T Consensus       281 ~~l~~L~~L~L  291 (622)
T 3g06_A          281 IHLSSETTVNL  291 (622)
T ss_dssp             GGSCTTCEEEC
T ss_pred             hhccccCEEEe
Confidence            56777777766

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.91  E-value=6.7e-06  Score=69.46  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=59.1

Q ss_pred             HHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCccc
Q 026286           40 VAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI  118 (240)
Q Consensus        40 l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~i  118 (240)
                      +..+...+|+|+.|+|++| +++. ..+..+...+|+|+.|.|+.|.+...      ..+..+. .+ +|++|.|.+|.+
T Consensus       162 l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------~~l~~l~-~l-~L~~L~L~~Npl  232 (267)
T 3rw6_A          162 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE------RELDKIK-GL-KLEELWLDGNSL  232 (267)
T ss_dssp             HHHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG------GGGGGGT-TS-CCSEEECTTSTT
T ss_pred             HHHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc------hhhhhcc-cC-CcceEEccCCcC
Confidence            3344456888999999886 4554 23444456778899999987765321      1111111 23 899999999997


Q ss_pred             CH------HHHHHHHhcCCcccEEec
Q 026286          119 ST------EIVLKILSSCALLEFLDL  138 (240)
Q Consensus       119 t~------~~l~~l~~~c~~Le~LdL  138 (240)
                      +.      .-...++..+|+|+.||=
T Consensus       233 ~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          233 CDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             ccccCcchhHHHHHHHHCcccCeECC
Confidence            64      334567778999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.90  E-value=1.2e-06  Score=69.99  Aligned_cols=122  Identities=16%  Similarity=0.134  Sum_probs=81.7

Q ss_pred             cEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcC
Q 026286           26 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM  105 (240)
Q Consensus        26 ~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~  105 (240)
                      +.+++++++++.  +..  .-.++|+.|+|++| .++.  +......+++|+.|.|+.|.+.....       .+ ...+
T Consensus        13 ~~l~~~~~~l~~--ip~--~~~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~-------~~-f~~l   77 (193)
T 2wfh_A           13 TVVRCSNKGLKV--LPK--GIPRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNRISTLSN-------QS-FSNM   77 (193)
T ss_dssp             TEEECTTSCCSS--CCS--CCCTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSCCCCCCT-------TT-TTTC
T ss_pred             CEEEcCCCCCCc--CCC--CCCCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCcCCEeCH-------hH-ccCC
Confidence            578888876653  111  12468999999996 5662  22234567999999998886643211       11 2378


Q ss_pred             CCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286          106 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  164 (240)
Q Consensus       106 ~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  164 (240)
                      ++|++|+|++|.|+.... ..+.++++|++|+|++|.........+ ..+++|+.|...
T Consensus        78 ~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~  134 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIG  134 (193)
T ss_dssp             TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECC
T ss_pred             CCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhhh-hcCccccEEEeC
Confidence            999999999999775322 224578999999999988664444333 456777777653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.90  E-value=2.7e-06  Score=79.34  Aligned_cols=33  Identities=9%  Similarity=-0.184  Sum_probs=15.7

Q ss_pred             CEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCC
Q 026286          109 KRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       109 ~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~  143 (240)
                      +.|+|++|.|+.  +..-+..+++|+.|+|++|..
T Consensus       210 ~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          210 IFFRCRENRITH--IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             EEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred             eEEecCCCccee--cCHHHhcCCCCCEEEeeCCcC
Confidence            555555555442  222222355566666655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.89  E-value=2.3e-06  Score=79.78  Aligned_cols=113  Identities=11%  Similarity=0.139  Sum_probs=74.6

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  103 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~  103 (240)
                      +|+.|+|++|.|+.  +..   .+++|+.|+|++| .++.     +...+++|+.|.|+.|.+....    .     +  
T Consensus       121 ~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N-~l~~-----lp~~l~~L~~L~Ls~N~L~~lp----~-----l--  178 (571)
T 3cvr_A          121 SLKHLDVDNNQLTM--LPE---LPALLEYINADNN-QLTM-----LPELPTSLEVLSVRNNQLTFLP----E-----L--  178 (571)
T ss_dssp             TCCEEECCSSCCSC--CCC---CCTTCCEEECCSS-CCSC-----CCCCCTTCCEEECCSSCCSCCC----C-----C--
T ss_pred             CCCEEECCCCcCCC--CCC---cCccccEEeCCCC-ccCc-----CCCcCCCcCEEECCCCCCCCcc----h-----h--
Confidence            89999999987765  332   5889999999986 4653     2225789999999888664321    1     1  


Q ss_pred             cCCCCCEEEeeCcccCHHHHHH----HHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLK----ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~----l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      . ++|++|+|++|.|+.  +..    +....+.|+.|+|++|....+.....  .+++|+.|..
T Consensus       179 ~-~~L~~L~Ls~N~L~~--lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~--~l~~L~~L~L  237 (571)
T 3cvr_A          179 P-ESLEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIIL  237 (571)
T ss_dssp             C-TTCCEEECCSSCCSS--CCCCC--------CCEEEECCSSCCCCCCGGGG--GSCTTEEEEC
T ss_pred             h-CCCCEEECcCCCCCc--hhhHHHhhhcccccceEEecCCCcceecCHHHh--cCCCCCEEEe
Confidence            1 899999999999772  222    11222334999999987665554332  3677777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.81  E-value=1e-06  Score=84.41  Aligned_cols=102  Identities=16%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.|.+..++.  +..-.-.+++|++|+|++|.|+  .+..-...+++|+.|+|++| .++ .....+ ..+++|+.|.|+
T Consensus       229 L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~~~-~~l~~L~~L~L~  301 (727)
T 4b8c_D          229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHN-RLT-SLPAEL-GSCFQLKYFYFF  301 (727)
T ss_dssp             EECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTS-CCS-SCCSSG-GGGTTCSEEECC
T ss_pred             EECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCC-cCC-ccChhh-cCCCCCCEEECC
Confidence            5555555542  2111226899999999999887  34333468999999999996 466 222233 467999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  120 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~  120 (240)
                      .|.+..    +...    + ..+++|++|+|++|.|+.
T Consensus       302 ~N~l~~----lp~~----~-~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          302 DNMVTT----LPWE----F-GNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             SSCCCC----CCSS----T-TSCTTCCCEECTTSCCCS
T ss_pred             CCCCCc----cChh----h-hcCCCccEEeCCCCccCC
Confidence            886632    1111    2 378999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.68  E-value=2.2e-05  Score=70.86  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=13.4

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCC
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC   58 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c   58 (240)
                      +|++|+|++|.++.  +.. ...+++|++|++++|
T Consensus       132 ~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred             CCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCC
Confidence            44444444444332  221 223444555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=6.5e-06  Score=70.86  Aligned_cols=90  Identities=16%  Similarity=0.115  Sum_probs=42.9

Q ss_pred             CCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCccc-EEecc
Q 026286           61 IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE-FLDLR  139 (240)
Q Consensus        61 it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le-~LdL~  139 (240)
                      +....+..+...|++|+.|.++.+.+...+.    .   + ...|++|+.|.|..| ++.-+- ....+|++|+ .|.+.
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~----~---a-F~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISKTNATTIPD----F---T-FAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTLELP  282 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTTBCCCEECT----T---T-TTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEEEEC
T ss_pred             ecHHHHHHHHHhcCCCeEEECCCCCcceecH----h---h-hhCCCCCCEEECCcc-cceehH-HHhhCChhccEEEEEc
Confidence            3444555555567777777776554322111    0   1 125666666666655 222111 1123566666 66665


Q ss_pred             CCCCCCCChHHHHhcCCCCcccc
Q 026286          140 GCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus       140 ~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      . ........++ ..|++|+.+.
T Consensus       283 ~-~l~~I~~~aF-~~c~~L~~l~  303 (329)
T 3sb4_A          283 A-SVTAIEFGAF-MGCDNLRYVL  303 (329)
T ss_dssp             T-TCCEECTTTT-TTCTTEEEEE
T ss_pred             c-cceEEchhhh-hCCccCCEEE
Confidence            4 1111122222 4555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.67  E-value=1.2e-06  Score=68.58  Aligned_cols=106  Identities=13%  Similarity=0.016  Sum_probs=67.5

Q ss_pred             CCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286           24 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  103 (240)
Q Consensus        24 ~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~  103 (240)
                      +.+.|+++++.++.  +..  .-.++|+.|+|++| .++.-.... ...+++|+.|.|+.|.+.....        .+..
T Consensus        10 ~~~~l~~s~n~l~~--ip~--~~~~~l~~L~L~~N-~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~--------~~f~   75 (170)
T 3g39_A           10 SGTTVDCSGKSLAS--VPT--GIPTTTQVLYLYDN-QITKLEPGV-FDRLTQLTRLDLDNNQLTVLPA--------GVFD   75 (170)
T ss_dssp             ETTEEECTTSCCSS--CCS--CCCTTCSEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSCCCCCCT--------TTTT
T ss_pred             CCCEEEeCCCCcCc--cCc--cCCCCCcEEEcCCC-cCCccChhh-hcCcccCCEEECCCCCcCccCh--------hhcc
Confidence            35778888886654  111  12478899999885 455421122 2456889999998776542211        1123


Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .+++|++|+|++|+|+.-. ...+.++++|++|+|+++...
T Consensus        76 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           76 KLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence            6788999999999876321 123457889999999887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.67  E-value=3.3e-06  Score=66.01  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=62.2

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|+.|+|++|.|+.-. ......+++|+.|+|++| +++.- ...+...+++|+.|.|+.|.+....    .    ..
T Consensus        29 ~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~----~----~~   97 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQLSLNDNQLKSIP----R----GA   97 (170)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC----T----TT
T ss_pred             CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCEEECCCCccCEeC----H----HH
Confidence            468999999999876521 223347899999999996 56632 1223356799999999988764321    1    11


Q ss_pred             HhcCCCCCEEEeeCcccC
Q 026286          102 ASTMPKLKRLEMAYHVIS  119 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it  119 (240)
                      ...+++|++|+|++|.++
T Consensus        98 ~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           98 FDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTTCTTCCEEECCSSCBC
T ss_pred             hcCCCCCCEEEeCCCCCC
Confidence            237899999999999975

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.59  E-value=5.1e-06  Score=65.27  Aligned_cols=105  Identities=13%  Similarity=0.046  Sum_probs=67.8

Q ss_pred             CcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286           25 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  104 (240)
Q Consensus        25 L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~  104 (240)
                      -+.+++++++++.  +..  .-.++|+.|+|++| .++.-. ......+++|+.|.|+.|.+....    .    .+...
T Consensus        14 ~~~l~~~~n~l~~--iP~--~~~~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~----~----~~~~~   79 (174)
T 2r9u_A           14 QTLVNCQNIRLAS--VPA--GIPTDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSNKLTAIP----T----GVFDK   79 (174)
T ss_dssp             SSEEECCSSCCSS--CCS--CCCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC----T----TTTTT
T ss_pred             CcEEEeCCCCCCc--cCC--CcCCCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCCCCCccC----h----hHhCC
Confidence            4678888876643  111  12478999999985 455321 222345788999999877654211    1    11236


Q ss_pred             CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +++|++|+|++|.|+.-. ...+.++++|++|+|+++...
T Consensus        80 l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           80 LTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCBC
T ss_pred             cchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCCcc
Confidence            789999999999877311 123557889999999988754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.50  E-value=7.4e-05  Score=67.42  Aligned_cols=72  Identities=10%  Similarity=0.181  Sum_probs=43.1

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.++.  +.. ...+++|++|++++|.++.  +.   ...++|+.|++++| .++.  +..+ ..+++|+.|.++
T Consensus       136 L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~--lp---~~~~~L~~L~L~~n-~l~~--l~~~-~~l~~L~~L~l~  203 (454)
T 1jl5_A          136 LGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKK--LP---DLPPSLEFIAAGNN-QLEE--LPEL-QNLPFLTAIYAD  203 (454)
T ss_dssp             EECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSS-CCSS--CCCC-TTCTTCCEEECC
T ss_pred             EECcCCCCCC--Ccc-cCCCCCCCEEECCCCcCcc--cC---CCcccccEEECcCC-cCCc--Cccc-cCCCCCCEEECC
Confidence            4445555443  222 3367888888888887653  11   22457888888875 4543  2222 456777777776


Q ss_pred             eccC
Q 026286           83 MHPL   86 (240)
Q Consensus        83 ~~~~   86 (240)
                      .|.+
T Consensus       204 ~N~l  207 (454)
T 1jl5_A          204 NNSL  207 (454)
T ss_dssp             SSCC
T ss_pred             CCcC
Confidence            6654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.45  E-value=3.1e-05  Score=60.69  Aligned_cols=87  Identities=14%  Similarity=0.075  Sum_probs=59.5

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .++|+.|+|++|.|+.-. ......+++|+.|+|++| +++.- ...+...+++|+.|.|+.|.+....    .    ..
T Consensus        32 ~~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~----~----~~  100 (174)
T 2r9u_A           32 PTDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLDLNDNHLKSIP----R----GA  100 (174)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCC----T----TT
T ss_pred             CCCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEECCCCccceeC----H----HH
Confidence            468999999999776421 223347899999999986 56541 1223356789999999888664211    1    11


Q ss_pred             HhcCCCCCEEEeeCcccC
Q 026286          102 ASTMPKLKRLEMAYHVIS  119 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it  119 (240)
                      ...+++|++|+|++|.++
T Consensus       101 ~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTTCTTCSEEECCSSCBC
T ss_pred             hccccCCCEEEeCCCCcc
Confidence            236899999999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.30  E-value=1.5e-05  Score=68.76  Aligned_cols=63  Identities=14%  Similarity=0.051  Sum_probs=28.7

Q ss_pred             CCCCCcEEEeeC-CCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~-~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      .+++|+.|+|++ |.|+.-. ......+++|+.|+|++| +++.-. ......+++|+.|.|+.|.+
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred             CCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCcc
Confidence            344566666654 5444211 011224556666666654 344311 11123455666666655544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.28  E-value=7e-06  Score=70.67  Aligned_cols=126  Identities=17%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      ..+++.+.+.+. +....+..+...|++|+.|+|++| .++.-. ......|++|+.|.+..+ +...    ...   ++
T Consensus       201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~n-i~~I----~~~---aF  269 (329)
T 3sb4_A          201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPHN-LKTI----GQR---VF  269 (329)
T ss_dssp             GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCTT-CCEE----CTT---TT
T ss_pred             ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCcc-ccee----hHH---Hh
Confidence            457777877664 566667777777999999999985 354322 223357899999999654 2211    111   12


Q ss_pred             HhcCCCCC-EEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286          102 ASTMPKLK-RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus       102 ~~~~~~L~-~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                       ..|++|+ .|.|.. .++.-+- ....+|++|+.|++.++...+....++ ..|++|+.+.
T Consensus       270 -~~~~~L~~~l~l~~-~l~~I~~-~aF~~c~~L~~l~l~~n~i~~I~~~aF-~~~~~L~~ly  327 (329)
T 3sb4_A          270 -SNCGRLAGTLELPA-SVTAIEF-GAFMGCDNLRYVLATGDKITTLGDELF-GNGVPSKLIY  327 (329)
T ss_dssp             -TTCTTCCEEEEECT-TCCEECT-TTTTTCTTEEEEEECSSCCCEECTTTT-CTTCCCCEEE
T ss_pred             -hCChhccEEEEEcc-cceEEch-hhhhCCccCCEEEeCCCccCccchhhh-cCCcchhhhc
Confidence             3788999 999987 4332111 223589999999997766554455444 5677887764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.25  E-value=4.7e-06  Score=72.44  Aligned_cols=50  Identities=12%  Similarity=0.241  Sum_probs=32.5

Q ss_pred             cccchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHH-HHhcCccCcEEEecCCC
Q 026286            8 FLCADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQ-IAGRLSAVTFLDLSYCS   59 (240)
Q Consensus         8 ~~~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~-l~~~~~~L~~L~Ls~c~   59 (240)
                      +.|++..|..|-.. .+++++|+|++|+|+.  +.. ....+++|++|+|++|.
T Consensus        14 v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~   65 (350)
T 4ay9_X           14 FLCQESKVTEIPSDLPRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQND   65 (350)
T ss_dssp             EEEESTTCCSCCTTCCTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCT
T ss_pred             EEecCCCCCccCcCcCCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCC
Confidence            44555555544333 3578999999998764  221 23468889999998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.90  E-value=9.2e-06  Score=70.58  Aligned_cols=65  Identities=14%  Similarity=0.019  Sum_probs=26.5

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      .+++|+.|.+++|.|+...-.. .....++..|+++++..++.-...++......++.|.++.|.+
T Consensus       102 ~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X          102 NLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             CCTTCCEEEEEEECCSSCCCCT-TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             hccccccccccccccccCCchh-hcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            3455566666555443210000 0123344455554443333211111222224566666665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.69  E-value=0.00048  Score=59.19  Aligned_cols=105  Identities=17%  Similarity=0.104  Sum_probs=70.3

Q ss_pred             cEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286           26 QTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  104 (240)
Q Consensus        26 ~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~  104 (240)
                      +.++++++ +++.  +.. ...+++|+.|+|+++++++.-.. .....+++|+.|.|+.|.+....    .    .....
T Consensus        11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~----~----~~~~~   78 (347)
T 2ifg_A           11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVA----P----DAFHF   78 (347)
T ss_dssp             SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEEC----T----TGGGS
T ss_pred             CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeC----H----HHhcC
Confidence            45677776 6765  445 55788999999996346664221 22346799999999988653211    0    11237


Q ss_pred             CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +++|++|+|++|.|+.-. ..++..++ |+.|+|.++...
T Consensus        79 l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           79 TPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSSCCC
T ss_pred             CcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCCCcc
Confidence            899999999999977311 12233344 999999987754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.37  E-value=0.00046  Score=61.33  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=26.9

Q ss_pred             cCCCCCEEEeeCcccCHHHH----HHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIV----LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l----~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .|++|+.|.+.++.++...+    .....+|++|+.|.|... .......++ ..|++|+.+..
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF-~~c~~L~~l~l  330 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLL-GGNRKVTQLTI  330 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTT-TTCCSCCEEEE
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhh-cCCCCccEEEE
Confidence            55666666666654321000    112345666666666531 111122222 45566665544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.21  E-value=0.003  Score=56.03  Aligned_cols=58  Identities=9%  Similarity=0.004  Sum_probs=29.9

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      ..|++|+.+.|+.++++.-+-..+  .+++|+.+.|..+  ++.-+-.+ ...|++|+.+.+.
T Consensus       177 ~~c~~L~~l~l~~n~l~~I~~~aF--~~~~L~~l~lp~~--l~~I~~~a-F~~~~~L~~l~l~  234 (401)
T 4fdw_A          177 YYCYNLKKADLSKTKITKLPASTF--VYAGIEEVLLPVT--LKEIGSQA-FLKTSQLKTIEIP  234 (401)
T ss_dssp             TTCTTCCEEECTTSCCSEECTTTT--TTCCCSEEECCTT--CCEECTTT-TTTCTTCCCEECC
T ss_pred             hCcccCCeeecCCCcceEechhhE--eecccCEEEeCCc--hheehhhH-hhCCCCCCEEecC
Confidence            357888888887765543111112  2566777766542  22111111 2345666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=90.67  E-value=0.021  Score=49.91  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=52.5

Q ss_pred             CCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           21 SAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        21 ~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      .|.+|+.+.++..  .|..    .....|++|+.+.+..  .++.-+- .....|++|+.+.+..+ +..    +.+.  
T Consensus       263 ~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~--~i~~I~~-~aF~~c~~L~~i~lp~~-v~~----I~~~--  328 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSS--RITELPE-SVFAGCISLKSIDIPEG-ITQ----ILDD--  328 (394)
T ss_dssp             TCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCEEECCTT-CCE----ECTT--
T ss_pred             ecccccEEecccccceecC----cccccccccccccCCC--cccccCc-eeecCCCCcCEEEeCCc-ccE----ehHh--
Confidence            5677777777665  2222    1123577777777754  2322111 12245777777777422 111    1111  


Q ss_pred             HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286           99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  141 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C  141 (240)
                       ++ ..|.+|+.+.|..+ ++.-+-.+ ..+|++|+.+.+.+.
T Consensus       329 -aF-~~C~~L~~i~ip~s-v~~I~~~a-F~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          329 -AF-AGCEQLERIAIPSS-VTKIPESA-FSNCTALNNIEYSGS  367 (394)
T ss_dssp             -TT-TTCTTCCEEEECTT-CCBCCGGG-GTTCTTCCEEEESSC
T ss_pred             -Hh-hCCCCCCEEEECcc-cCEEhHhH-hhCCCCCCEEEECCc
Confidence             11 26677777777543 22111111 347777887777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=89.35  E-value=0.029  Score=49.03  Aligned_cols=101  Identities=16%  Similarity=0.137  Sum_probs=59.7

Q ss_pred             hCCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286           20 ASAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE   97 (240)
Q Consensus        20 ~~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~   97 (240)
                      ..|++|+.+.++..  .|.+.    ....|++|+.+.|...  ++.-+-.+ ...|++|+.+.+..+ +..    +..  
T Consensus       285 ~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~a-F~~C~~L~~i~ip~s-v~~----I~~--  350 (394)
T 4gt6_A          285 MNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEG--ITQILDDA-FAGCEQLERIAIPSS-VTK----IPE--  350 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTT-TTTCTTCCEEEECTT-CCB----CCG--
T ss_pred             ccccccccccCCCcccccCce----eecCCCCcCEEEeCCc--ccEehHhH-hhCCCCCCEEEECcc-cCE----EhH--
Confidence            46899999999764  34332    2347999999999763  33211122 357899999999532 221    111  


Q ss_pred             HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC
Q 026286           98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG  140 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~  140 (240)
                       .++ ..|++|+.+.+.++....   . -...|..|+.|.+..
T Consensus       351 -~aF-~~C~~L~~i~~~~~~~~~---~-~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          351 -SAF-SNCTALNNIEYSGSRSQW---N-AISTDSGLQNLPVAP  387 (394)
T ss_dssp             -GGG-TTCTTCCEEEESSCHHHH---H-TCBCCCCC-------
T ss_pred             -hHh-hCCCCCCEEEECCceeeh---h-hhhccCCCCEEEeCC
Confidence             122 389999999999875321   2 234688888887643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.65  E-value=0.0083  Score=52.55  Aligned_cols=122  Identities=11%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             hCCCCCcEEEeeCCC--CCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286           20 ASAGSLQTLRLPRSE--MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE   97 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~--itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~   97 (240)
                      ..|.+|+.+.++.+.  |..    .....|+.|+.+.+... .+...    ....|++|+.+.+..+ +...    .+. 
T Consensus       250 ~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~~~~~~~-~i~~~----~F~~~~~L~~i~l~~~-i~~I----~~~-  314 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLRIGG----SLFYNCSGLKKVIYGSV-IVPEK----TFYGCSSLTEVKLLDS-VKFI----GEE-  314 (394)
T ss_dssp             TTCSSCCEEEECCTTCEECS----CTTTTCTTCCEEEECSS-EECTT----TTTTCTTCCEEEECTT-CCEE----CTT-
T ss_pred             cccccceeEEcCCCcceeec----cccccccccceeccCce-eeccc----cccccccccccccccc-ccee----chh-
Confidence            367888988887762  222    11235677777766542 22221    2345677777777422 1111    111 


Q ss_pred             HHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286           98 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                        + ...|++|+.+.|..+ ++.-+-. ...+|.+|+.+.+... ..+....+. ..|++|+.+..
T Consensus       315 --a-F~~c~~L~~i~lp~~-v~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF-~~C~~L~~i~l  373 (394)
T 4fs7_A          315 --A-FESCTSLVSIDLPYL-VEEIGKR-SFRGCTSLSNINFPLS-LRKIGANAF-QGCINLKKVEL  373 (394)
T ss_dssp             --T-TTTCTTCCEECCCTT-CCEECTT-TTTTCTTCCEECCCTT-CCEECTTTB-TTCTTCCEEEE
T ss_pred             --h-hcCCCCCCEEEeCCc-ccEEhHH-hccCCCCCCEEEECcc-ccEehHHHh-hCCCCCCEEEE
Confidence              1 125667777776533 2211111 1236777777777543 111123232 45666666544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=88.44  E-value=0.024  Score=49.10  Aligned_cols=123  Identities=14%  Similarity=0.133  Sum_probs=65.1

Q ss_pred             CCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           21 SAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        21 ~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      .+.+|+.+.++.+  .|..    .....|++|+.+.+...  ++.-+- .....|.+|+.+.+..+ +..    +.   .
T Consensus       215 ~~~~l~~i~~~~~~~~i~~----~~f~~~~~L~~i~lp~~--v~~I~~-~aF~~~~~l~~i~l~~~-i~~----i~---~  279 (379)
T 4h09_A          215 YGKNLKKITITSGVTTLGD----GAFYGMKALDEIAIPKN--VTSIGS-FLLQNCTALKTLNFYAK-VKT----VP---Y  279 (379)
T ss_dssp             TCSSCSEEECCTTCCEECT----TTTTTCSSCCEEEECTT--CCEECT-TTTTTCTTCCEEEECCC-CSE----EC---T
T ss_pred             cccccceeeeccceeEEcc----ccccCCccceEEEcCCC--ccEeCc-cccceeehhcccccccc-cee----cc---c
Confidence            4566777766554  1221    11235777888887652  332111 12345777888877432 111    00   0


Q ss_pred             HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccC-CCCCCCChHHHHhcCCCCccccC
Q 026286           99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG-CWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~-C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      . ....|++|+.+.+.++.++.-+-. ...+|.+|+.+.|.. ...+  ...+. ..|.+|+.+..
T Consensus       280 ~-aF~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~~i~lp~~l~~I--~~~aF-~~C~~L~~i~i  340 (379)
T 4h09_A          280 L-LCSGCSNLTKVVMDNSAIETLEPR-VFMDCVKLSSVTLPTALKTI--QVYAF-KNCKALSTISY  340 (379)
T ss_dssp             T-TTTTCTTCCEEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEE--CTTTT-TTCTTCCCCCC
T ss_pred             c-ccccccccccccccccccceehhh-hhcCCCCCCEEEcCccccEE--HHHHh-hCCCCCCEEEE
Confidence            1 123678888888877654422211 234788888888853 2222  33333 56677776654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=83.05  E-value=0.044  Score=47.38  Aligned_cols=102  Identities=12%  Similarity=0.224  Sum_probs=65.0

Q ss_pred             hCCCCCcEEEeeCC--CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHH
Q 026286           20 ASAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE   97 (240)
Q Consensus        20 ~~~~~L~~L~L~~~--~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~   97 (240)
                      ..|.+|+.+.++.+  .|..    .....|.+|+.+.+...  ++.-+- .....|++|+.+.+..+.+...+    +. 
T Consensus       237 ~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~L~~i~l~~~~i~~I~----~~-  304 (379)
T 4h09_A          237 YGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAK--VKTVPY-LLCSGCSNLTKVVMDNSAIETLE----PR-  304 (379)
T ss_dssp             TTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCC--CSEECT-TTTTTCTTCCEEEECCTTCCEEC----TT-
T ss_pred             cCCccceEEEcCCCccEeCc----cccceeehhcccccccc--ceeccc-cccccccccccccccccccceeh----hh-
Confidence            36889999999876  2332    12346899999999752  332111 22357899999999654332211    11 


Q ss_pred             HHHHHhcCCCCCEEEeeCcc--cCHHHHHHHHhcCCcccEEeccC
Q 026286           98 ANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRG  140 (240)
Q Consensus        98 ~~~i~~~~~~L~~L~L~~~~--it~~~l~~l~~~c~~Le~LdL~~  140 (240)
                        ++ ..|++|+.+.|..+-  |...   + ..+|++|+.+.+..
T Consensus       305 --aF-~~c~~L~~i~lp~~l~~I~~~---a-F~~C~~L~~i~ip~  342 (379)
T 4h09_A          305 --VF-MDCVKLSSVTLPTALKTIQVY---A-FKNCKALSTISYPK  342 (379)
T ss_dssp             --TT-TTCTTCCEEECCTTCCEECTT---T-TTTCTTCCCCCCCT
T ss_pred             --hh-cCCCCCCEEEcCccccEEHHH---H-hhCCCCCCEEEECC
Confidence              12 378999999996542  4332   2 34899999998853

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.76  E-value=0.055  Score=47.23  Aligned_cols=121  Identities=12%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ..|+.|+.+.+....+...    ....|++|+.+.+...  ++.-+-.+ ...|++|+.+.+..+ +...    ..   .
T Consensus       273 ~~~~~l~~~~~~~~~i~~~----~F~~~~~L~~i~l~~~--i~~I~~~a-F~~c~~L~~i~lp~~-v~~I----~~---~  337 (394)
T 4fs7_A          273 YNCSGLKKVIYGSVIVPEK----TFYGCSSLTEVKLLDS--VKFIGEEA-FESCTSLVSIDLPYL-VEEI----GK---R  337 (394)
T ss_dssp             TTCTTCCEEEECSSEECTT----TTTTCTTCCEEEECTT--CCEECTTT-TTTCTTCCEECCCTT-CCEE----CT---T
T ss_pred             ccccccceeccCceeeccc----cccccccccccccccc--cceechhh-hcCCCCCCEEEeCCc-ccEE----hH---H
Confidence            3577788877766544331    2346888888888652  33211112 346788888888522 2111    11   1


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccc
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL  161 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L  161 (240)
                      ++ ..|++|+.+.|..+ ++.-+-. ...+|++|+.+.|...-..  -.... ..|++|+.+
T Consensus       338 aF-~~c~~L~~i~lp~~-l~~I~~~-aF~~C~~L~~i~lp~~~~~--~~~~F-~~c~~L~~I  393 (394)
T 4fs7_A          338 SF-RGCTSLSNINFPLS-LRKIGAN-AFQGCINLKKVELPKRLEQ--YRYDF-EDTTKFKWI  393 (394)
T ss_dssp             TT-TTCTTCCEECCCTT-CCEECTT-TBTTCTTCCEEEEEGGGGG--GGGGB-CTTCEEEEE
T ss_pred             hc-cCCCCCCEEEECcc-ccEehHH-HhhCCCCCCEEEECCCCEE--hhhee-cCCCCCcEE
Confidence            12 26788888888655 2221111 2357888998888653222  11111 455666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=81.51  E-value=0.32  Score=35.73  Aligned_cols=14  Identities=14%  Similarity=0.401  Sum_probs=6.6

Q ss_pred             cCCCCCEEEeeCcc
Q 026286          104 TMPKLKRLEMAYHV  117 (240)
Q Consensus       104 ~~~~L~~L~L~~~~  117 (240)
                      .+++|+.|+|++|.
T Consensus        53 ~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           53 ALPALRTAHLGANP   66 (130)
T ss_dssp             GCTTCCEEECCSSC
T ss_pred             hccccCEEEecCCC
Confidence            34444555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.83
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.81
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.31
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.28
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.24
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	99.05
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.93
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.9
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.58
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.57
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.31
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.3
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.09
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.09
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.04
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.76
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.53
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.52
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.26
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.02
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.97
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.95
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.01

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.9e-20  Score=157.18  Aligned_cols=155  Identities=21%  Similarity=0.172  Sum_probs=130.4

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEE
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR   81 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L   81 (240)
                      .|++++|.++++++..+..+|++|++|+|.+|.+++.++..++ ++++|+.|+|++|..+|+.++.++++.||+|++|++
T Consensus        50 ~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~l  128 (284)
T d2astb2          50 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL  128 (284)
T ss_dssp             EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEEC
T ss_pred             EEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhcccccc
Confidence            3678889999999999999999999999999999999998886 789999999999999999999999999999999999


Q ss_pred             eeccCCCCCccCChHHHHH-HHhcCCCCCEEEeeCcc--cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCC
Q 026286           82 NMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  158 (240)
Q Consensus        82 ~~~~~~~~~~~~~d~~~~~-i~~~~~~L~~L~L~~~~--it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L  158 (240)
                      +.+.      .+++.++.. ++..+++|++|+++++.  +++.++..++.+||+|++|+|++|..++.........+++|
T Consensus       129 s~c~------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L  202 (284)
T d2astb2         129 SWCF------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  202 (284)
T ss_dssp             CCCT------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccc------ccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcC
Confidence            7542      246666654 55556899999999864  89999999999999999999999998833222223567888


Q ss_pred             ccccC
Q 026286          159 KVLGP  163 (240)
Q Consensus       159 ~~L~~  163 (240)
                      ++|..
T Consensus       203 ~~L~L  207 (284)
T d2astb2         203 QHLSL  207 (284)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            88877

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.4e-20  Score=155.06  Aligned_cols=153  Identities=20%  Similarity=0.291  Sum_probs=131.4

Q ss_pred             cccccccccchhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHH-HHHhcCCCCcEE
Q 026286            2 ALCLLDFLCADVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE-AIGKHCKLLVVL   79 (240)
Q Consensus         2 ~l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~-~l~~~c~~L~~L   79 (240)
                      .|.+.+|.+++..+..++ ++++|++|+|++| .|++.++..+++.||+|++|+|++|..+++.++. .+++.|++|+.|
T Consensus        75 ~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L  153 (284)
T d2astb2          75 NLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  153 (284)
T ss_dssp             EEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             cccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchh
Confidence            367889999999999998 5899999999998 8999999999999999999999999999998875 566778999999


Q ss_pred             EEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc-cCHHHHHHHHhcCCcccEEeccCCCCCCCChHHH--HhcCC
Q 026286           80 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM--KGNFP  156 (240)
Q Consensus        80 ~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~-it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l--~~~~~  156 (240)
                      .++.+.     ..+++.++.+++..||+|++|+|++|. +++.++..+. +||+|++|+|++|..+  ++..+  ...+|
T Consensus       154 ~l~~~~-----~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i--~~~~l~~L~~~~  225 (284)
T d2astb2         154 NLSGYR-----KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDI--IPETLLELGEIP  225 (284)
T ss_dssp             ECCSCG-----GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTC--CGGGGGGGGGCT
T ss_pred             hhcccc-----cccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCC--ChHHHHHHhcCC
Confidence            996431     146788999999999999999999987 9998887776 7999999999999999  54432  36688


Q ss_pred             CCccccC
Q 026286          157 NLKVLGP  163 (240)
Q Consensus       157 ~L~~L~~  163 (240)
                      +|+.|..
T Consensus       226 ~L~~L~l  232 (284)
T d2astb2         226 TLKTLQV  232 (284)
T ss_dssp             TCCEEEC
T ss_pred             CCCEEee
Confidence            9988876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.31  E-value=1.4e-11  Score=95.30  Aligned_cols=123  Identities=7%  Similarity=0.050  Sum_probs=99.4

Q ss_pred             hhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHhc---CccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEeec
Q 026286           12 DVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMH   84 (240)
Q Consensus        12 D~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~   84 (240)
                      ++++..|....++|++|+|+++ .|++.++..++..   .++|++|+|++| .+++.++.++++   .++.|+.|.|+.|
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n   82 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN   82 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehh
Confidence            4678899999999999999986 7999998887654   678999999996 689887765543   5789999999877


Q ss_pred             cCCCCCccCChHHHHHHHhcC---CCCCEEEeeCcc---cCHHHHH---HHHhcCCcccEEeccCCC
Q 026286           85 PLDTADKLSQDDEANAIASTM---PKLKRLEMAYHV---ISTEIVL---KILSSCALLEFLDLRGCW  142 (240)
Q Consensus        85 ~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L~~~~---it~~~l~---~l~~~c~~Le~LdL~~C~  142 (240)
                             .+++.++.+++..+   +.|++|+|++|+   +.+.+..   ..+...+.|+.|+++.+.
T Consensus        83 -------~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          83 -------FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             -------BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             -------hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence                   45788888887766   679999999885   6666644   445668999999997764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.5e-12  Score=111.07  Aligned_cols=117  Identities=14%  Similarity=0.100  Sum_probs=64.2

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHH---hcCccCcEEEecCCCCCCHHHHHHHHhcC----CC
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGKHC----KL   75 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~---~~~~~L~~L~Ls~c~~it~~~l~~l~~~c----~~   75 (240)
                      |++..-++|+..+..+.+.+++||+|+|++|+|++.++..++   +.+|+|+.|+|++| .|++.++..+++.+    ++
T Consensus         7 ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~   85 (460)
T d1z7xw1           7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCK   85 (460)
T ss_dssp             EEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCC
T ss_pred             EEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCC
Confidence            344444556666666666666666666666666665554443   34566666666653 46665555555432    35


Q ss_pred             CcEEEEeeccCCCCCccCChHHHHHHHh---cCCCCCEEEeeCcccCHHHHHHHH
Q 026286           76 LVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTEIVLKIL  127 (240)
Q Consensus        76 L~~L~L~~~~~~~~~~~~~d~~~~~i~~---~~~~L~~L~L~~~~it~~~l~~l~  127 (240)
                      |++|.++.+.       +++.++..++.   .+++|++|+|++|.|++.++..+.
T Consensus        86 L~~L~L~~n~-------it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~  133 (460)
T d1z7xw1          86 IQKLSLQNCC-------LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC  133 (460)
T ss_dssp             CCEEECTTSC-------CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCEEECCCCC-------ccccccccccchhhccccccccccccccchhhhhhhhh
Confidence            6666665442       34444444332   345666666666666665555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.28  E-value=1.8e-11  Score=104.54  Aligned_cols=150  Identities=16%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             ccccccccchhcHHHHH------------hCCCCCcEEEeeCCCCCHHHHHHHH---hcCccCcEEEecCCCCCCHHHHH
Q 026286            3 LCLLDFLCADVDLFPGS------------ASAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALE   67 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~------------~~~~~L~~L~L~~~~itd~~l~~l~---~~~~~L~~L~Ls~c~~it~~~l~   67 (240)
                      |.+..+..++.+...++            ...+.|+.|.++++.+++.++..++   +.+++|+.|+|++| .++..++.
T Consensus       126 L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~g~~  204 (344)
T d2ca6a1         126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIE  204 (344)
T ss_dssp             EECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHH
T ss_pred             eecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccc-cccccccc
Confidence            56666666665544442            3577899999998888876665554   45788999999886 58877654


Q ss_pred             H-H---HhcCCCCcEEEEeeccCCCCCccCChHHHHHHH---hcCCCCCEEEeeCcccCHHHHHHHHhc-----CCcccE
Q 026286           68 A-I---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS-----CALLEF  135 (240)
Q Consensus        68 ~-l---~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~---~~~~~L~~L~L~~~~it~~~l~~l~~~-----c~~Le~  135 (240)
                      . +   ...+++|+.|.++.|.       +++.++.+++   ..+++|++|+|++|.|++.++..++..     .+.|++
T Consensus       205 ~~l~~~l~~~~~L~~L~Ls~N~-------i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~  277 (344)
T d2ca6a1         205 HLLLEGLAYCQELKVLDLQDNT-------FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT  277 (344)
T ss_dssp             HHHHTTGGGCTTCCEEECCSSC-------CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred             cchhhhhcchhhhccccccccc-------ccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCE
Confidence            3 2   3467889999987664       3566665554   456889999999999999888877643     356899


Q ss_pred             EeccCCCCCCCChH-------HHHhcCCCCccccC
Q 026286          136 LDLRGCWDVKLDDK-------FMKGNFPNLKVLGP  163 (240)
Q Consensus       136 LdL~~C~~v~~~~~-------~l~~~~~~L~~L~~  163 (240)
                      |+|++|. +  +..       .+...++.|++|..
T Consensus       278 L~ls~N~-i--~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         278 LRLQYNE-I--ELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             EECCSSC-C--BHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             EECCCCc-C--ChHHHHHHHHHHHccCCCCCEEEC
Confidence            9999876 4  322       12346778888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.27  E-value=5.1e-11  Score=91.74  Aligned_cols=123  Identities=11%  Similarity=0.073  Sum_probs=99.6

Q ss_pred             hhcHHHHHhCCCCCcEEEeeCC-CCCHHHHHHHHh---cCccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEeec
Q 026286           12 DVDLFPGSASAGSLQTLRLPRS-EMSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMH   84 (240)
Q Consensus        12 D~~L~~i~~~~~~L~~L~L~~~-~itd~~l~~l~~---~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~   84 (240)
                      ++.+..+....++|++|+|+++ .|++.++..+++   .+++|++|+|++| .++..+..++++   ..+.|+.|.+..+
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence            5678888889999999999985 799999888876   5789999999997 689988776654   4689999998765


Q ss_pred             cCCCCCccCChHHHHHHHhcC---CCCCEEEee--CcccCHHHHHHHH---hcCCcccEEeccCCC
Q 026286           85 PLDTADKLSQDDEANAIASTM---PKLKRLEMA--YHVISTEIVLKIL---SSCALLEFLDLRGCW  142 (240)
Q Consensus        85 ~~~~~~~~~~d~~~~~i~~~~---~~L~~L~L~--~~~it~~~l~~l~---~~c~~Le~LdL~~C~  142 (240)
                             .+++.++.+++..+   ++|+.+.|.  +|.+++.+..+++   +.++.|+.|++..+.
T Consensus        85 -------~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          85 -------FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             -------CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             -------cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                   45788888887554   889886665  5669998866664   489999999997654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=106.38  Aligned_cols=131  Identities=17%  Similarity=0.094  Sum_probs=73.7

Q ss_pred             ccccccccchhcHHHH---HhCCCCCcEEEeeCCCCCHHHHHHHHhc----CccCcEEEecCCCCCCHHHHHHH---Hhc
Q 026286            3 LCLLDFLCADVDLFPG---SASAGSLQTLRLPRSEMSDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEAI---GKH   72 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i---~~~~~~L~~L~L~~~~itd~~l~~l~~~----~~~L~~L~Ls~c~~it~~~l~~l---~~~   72 (240)
                      |.+..+..+......+   ....+.++.+.+++|.+++.++..++..    .+.|+.+++++| .++..++..+   ...
T Consensus       260 l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~  338 (460)
T d1z7xw1         260 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQ  338 (460)
T ss_dssp             EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc-chhhhhhhhccccccc
Confidence            3444444444433322   2345667777777667766666665432    345677777665 3555444433   234


Q ss_pred             CCCCcEEEEeeccCCCCCccCChHHHHHHHh----cCCCCCEEEeeCcccCHHHHHHH---HhcCCcccEEeccCC
Q 026286           73 CKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKI---LSSCALLEFLDLRGC  141 (240)
Q Consensus        73 c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~----~~~~L~~L~L~~~~it~~~l~~l---~~~c~~Le~LdL~~C  141 (240)
                      +++|+.|.|+.|.       +++.++..+++    ..+.|++|+|++|.|++.++.++   +..++.|++|+|+++
T Consensus       339 ~~~L~~L~Ls~N~-------i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         339 NRFLLELQISNNR-------LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             CSSCCEEECCSSB-------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             ccchhhhheeeec-------ccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence            5667777776553       34555555543    23457777777777776665544   344666777777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.19  E-value=1.5e-10  Score=98.65  Aligned_cols=132  Identities=15%  Similarity=0.122  Sum_probs=81.0

Q ss_pred             ccccccccchhcHHHHH---hCCCCCcEEEeeCCCCCHHHHHHHHh------------cCccCcEEEecCCCCCCHHHHH
Q 026286            3 LCLLDFLCADVDLFPGS---ASAGSLQTLRLPRSEMSDSIVAQIAG------------RLSAVTFLDLSYCSKIGAPALE   67 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~---~~~~~L~~L~L~~~~itd~~l~~l~~------------~~~~L~~L~Ls~c~~it~~~l~   67 (240)
                      |.|.++..++.++..++   ..+++|++|+|++|.+++.+...+++            ..+.|+.|.++++ .+++.++.
T Consensus        98 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~  176 (344)
T d2ca6a1          98 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMK  176 (344)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHH
T ss_pred             ccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-cccccccc
Confidence            55666666666655554   34677777777777776655544432            2456777777764 56665544


Q ss_pred             HHH---hcCCCCcEEEEeeccCCCCCccCChHHHHHH----HhcCCCCCEEEeeCcccCHHHHHHH---HhcCCcccEEe
Q 026286           68 AIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAI----ASTMPKLKRLEMAYHVISTEIVLKI---LSSCALLEFLD  137 (240)
Q Consensus        68 ~l~---~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i----~~~~~~L~~L~L~~~~it~~~l~~l---~~~c~~Le~Ld  137 (240)
                      .++   +.+++|+.|.++.+.       +++.++..+    ...+++|++|+|++|.|++.++..+   ++.+++|++|+
T Consensus       177 ~l~~~l~~~~~L~~L~L~~n~-------i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~  249 (344)
T d2ca6a1         177 EWAKTFQSHRLLHTVKMVQNG-------IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  249 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSC-------CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             cccchhhhhhhhccccccccc-------ccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhh
Confidence            432   346777777776553       344444332    2345777777777777777665544   35667777777


Q ss_pred             ccCCC
Q 026286          138 LRGCW  142 (240)
Q Consensus       138 L~~C~  142 (240)
                      |++|.
T Consensus       250 Ls~n~  254 (344)
T d2ca6a1         250 LNDCL  254 (344)
T ss_dssp             CTTCC
T ss_pred             hhcCc
Confidence            77775

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.2e-11  Score=95.40  Aligned_cols=129  Identities=17%  Similarity=0.178  Sum_probs=95.6

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      ++.+||+|+|++|+|+.  +..+...+++|+.|+|++| .|+.  +..+ ..+|+|+.|.++.|.+....    .    .
T Consensus        16 n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N-~i~~--l~~~-~~l~~L~~L~ls~N~i~~l~----~----~   81 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRK--LDGF-PLLRRLKTLLVNNNRICRIG----E----G   81 (162)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCE--ECCC-CCCSSCCEEECCSSCCCEEC----S----C
T ss_pred             CcCcCcEEECCCCCCCc--cCccccccccCCEEECCCC-CCCc--cCCc-ccCcchhhhhcccccccCCC----c----c
Confidence            46789999999998876  3445567899999999996 5663  2222 46799999999988764221    1    1


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChH--HHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~  163 (240)
                      +...+|+|++|+|++|.|+.-.-...+..+|+|++|++++|......+.  .+...+|+|+.|..
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            3347899999999999987643223456899999999999986644542  23477899998875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.05  E-value=8.4e-10  Score=85.03  Aligned_cols=119  Identities=13%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             HHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEeeccCCCCCccCChHHHHHHHh---cCCCCCEE
Q 026286           38 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRL  111 (240)
Q Consensus        38 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~---~~~~L~~L  111 (240)
                      +.+..+....|.|++|+|+++..++..++..+++   .+++|++|.|+.+.       +++.++.+++.   ..+.|++|
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-------l~~~~~~~la~~L~~n~~L~~L   77 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-------ISDSEARGLIELIETSPSLRVL   77 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-------CBHHHHTTHHHHHHHCSSCCEE
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-------cchhHHHHHhhhhhhcccccce
Confidence            5678888889999999999877799988876654   45789999998663       46777766654   45899999


Q ss_pred             EeeCcccCHHHHHHHHh---cCCcccEEeccCCCCCCCChHH---H---HhcCCCCccccC
Q 026286          112 EMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKF---M---KGNFPNLKVLGP  163 (240)
Q Consensus       112 ~L~~~~it~~~l~~l~~---~c~~Le~LdL~~C~~v~~~~~~---l---~~~~~~L~~L~~  163 (240)
                      +|++|.|++.++..+++   .++.|++|+|+++..-......   +   ....+.|+.|..
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l  138 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  138 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             eeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeC
Confidence            99999999999887754   4577999999987644334332   2   245677877765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.93  E-value=8.9e-09  Score=78.77  Aligned_cols=118  Identities=19%  Similarity=0.161  Sum_probs=91.9

Q ss_pred             HHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHh---cCCCCcEEEEeeccCCCCCccCChHHHHHHHhc---CCCCCE
Q 026286           37 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKR  110 (240)
Q Consensus        37 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~---~~~L~~  110 (240)
                      ++.+..+....|.|++|+|+++..++..++..+++   .+++|++|.++.+.       +++.++.+++..   .+.|+.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-------l~~~~~~~L~~~l~~~~~l~~   78 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-------SNDPVAFALAEMLKVNNTLKS   78 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-------CCHHHHHHHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-------ccHHHHHHHHHHHhhcccchh
Confidence            35677788889999999999877899999887775   56899999998663       567777777644   489999


Q ss_pred             EEeeCcccCHHHHHHHH---hcCCcccEEeccCCC-CCCCChHH---H---HhcCCCCccccC
Q 026286          111 LEMAYHVISTEIVLKIL---SSCALLEFLDLRGCW-DVKLDDKF---M---KGNFPNLKVLGP  163 (240)
Q Consensus       111 L~L~~~~it~~~l~~l~---~~c~~Le~LdL~~C~-~v~~~~~~---l---~~~~~~L~~L~~  163 (240)
                      |++++|.+++.++..++   ..++.|+.++|..|. .+  .+..   +   .+.++.|+.|..
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i--~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPL--GNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCC--CHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcC--cHHHHHHHHHHHHhCCCcCEEeC
Confidence            99999999999988776   456889988887664 34  3322   2   257888888865

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=4.3e-11  Score=88.10  Aligned_cols=119  Identities=23%  Similarity=0.398  Sum_probs=80.8

Q ss_pred             cEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHH-HHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhc
Q 026286           26 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  104 (240)
Q Consensus        26 ~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l-~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~  104 (240)
                      |.|+|++|+|+.  +..+ ..+++|++|++++| .++.  + ..+ ..+++|+.|.++.|.+...         ..+ ..
T Consensus         1 R~L~Ls~n~l~~--l~~l-~~l~~L~~L~ls~N-~l~~--lp~~~-~~l~~L~~L~l~~N~i~~l---------~~~-~~   63 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCHL-EQLLLVTHLDLSHN-RLRA--LPPAL-AALRCLEVLQASDNALENV---------DGV-AN   63 (124)
T ss_dssp             SEEECTTSCCSS--CCCG-GGGTTCCEEECCSS-CCCC--CCGGG-GGCTTCCEEECCSSCCCCC---------GGG-TT
T ss_pred             CEEEcCCCCCCC--Cccc-ccCCCCCEEECCCC-ccCc--chhhh-hhhhccccccccccccccc---------Ccc-cc
Confidence            578888888774  3333 47888999999885 5653  2 233 4578899999987765321         122 37


Q ss_pred             CCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC--hHHHHhcCCCCccc
Q 026286          105 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD--DKFMKGNFPNLKVL  161 (240)
Q Consensus       105 ~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~--~~~l~~~~~~L~~L  161 (240)
                      +|+|++|++++|+|+.-.....+.+||+|+.|+++++......  ...+.+.+|+++.+
T Consensus        64 l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          64 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            8999999999999875432233467899999999887654222  23455778888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.2e-11  Score=91.19  Aligned_cols=123  Identities=13%  Similarity=0.141  Sum_probs=87.6

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |+|.+..++.-  ..+...+++|+.|+|++|.|+.  +..+ ..+++|+.|++++| .++.- ...+...+|+|+.|.++
T Consensus        23 L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~N~i~~--l~~~-~~l~~L~~L~ls~N-~i~~l-~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          23 LDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRK--LDGF-PLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILT   95 (162)
T ss_dssp             EECTTSCCCSC--CCGGGGTTCCSEEECCSSCCCE--ECCC-CCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECC
T ss_pred             EECCCCCCCcc--CccccccccCCEEECCCCCCCc--cCCc-ccCcchhhhhcccc-cccCC-Cccccccccccccceec
Confidence            56777776643  3455678999999999998875  3233 47899999999997 46542 12344568999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH--HHHHHhcCCcccEEecc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLR  139 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~--l~~l~~~c~~Le~LdL~  139 (240)
                      .|.+...      ..+..+ ..+|+|++|++++|.++...  ...++..+|+|++||-+
T Consensus        96 ~N~i~~~------~~l~~l-~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          96 NNSLVEL------GDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             SCCCCCG------GGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccccc------cccccc-ccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            8865321      112223 37899999999999976532  23456789999999854

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.75  E-value=1.7e-10  Score=91.54  Aligned_cols=127  Identities=19%  Similarity=0.188  Sum_probs=89.2

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|+|++|+|+.  +..+ ..+++|+.|+|++| .++.  +..+...+++|+.|.++.|.+.       .  +..
T Consensus        46 ~L~~L~~L~Ls~n~I~~--i~~l-~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N~i~-------~--l~~  110 (198)
T d1m9la_          46 TLKACKHLALSTNNIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIA-------S--LSG  110 (198)
T ss_dssp             HTTTCCEEECSEEEESC--CCCH-HHHTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEEECC-------C--HHH
T ss_pred             cccccceeECcccCCCC--cccc-cCCccccChhhccc-cccc--cccccccccccccccccccccc-------c--ccc
Confidence            57899999999997765  3333 37899999999986 4553  2223333467999999888652       2  122


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCC----Ch-----HHHHhcCCCCccccC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL----DD-----KFMKGNFPNLKVLGP  163 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~----~~-----~~l~~~~~~L~~L~~  163 (240)
                      + ..+++|++|+|++|+|+.-.-...+.++|+|+.|+|++|.....    ..     ..+...+|+|+.|..
T Consensus       111 ~-~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         111 I-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             H-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             c-cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            3 36789999999999998754444566899999999999864310    00     112467899988865

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.69  E-value=9e-09  Score=80.93  Aligned_cols=135  Identities=16%  Similarity=0.139  Sum_probs=83.2

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.+++  +..+ +++++|++|+|++|.+++  +.. ...+++|+.|++++|....-.   .+ ..+++|+.|.++
T Consensus        45 L~l~~~~i~~--l~~l-~~l~nL~~L~Ls~N~l~~--~~~-l~~l~~L~~L~l~~n~~~~~~---~l-~~l~~L~~L~l~  114 (199)
T d2omxa2          45 LQADRLGIKS--IDGV-EYLNNLTQINFSNNQLTD--ITP-LKNLTKLVDILMNNNQIADIT---PL-ANLTNLTGLTLF  114 (199)
T ss_dssp             EECTTSCCCC--CTTG-GGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCCCG---GG-TTCTTCSEEECC
T ss_pred             EECCCCCCCC--cccc-ccCCCcCcCccccccccC--ccc-ccCCccccccccccccccccc---cc-cccccccccccc
Confidence            5556666654  2223 468999999999998876  233 347899999999987533322   23 467889999887


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCcccc
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  162 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~  162 (240)
                      .+......         . ...+++|+.|++++|.++.-  . .+.++++|+.|++.+|.......   ...+++|+.|.
T Consensus       115 ~~~~~~~~---------~-~~~l~~L~~L~l~~n~l~~~--~-~l~~~~~L~~L~l~~n~l~~l~~---l~~l~~L~~L~  178 (199)
T d2omxa2         115 NNQITDID---------P-LKNLTNLNRLELSSNTISDI--S-ALSGLTSLQQLNFSSNQVTDLKP---LANLTTLERLD  178 (199)
T ss_dssp             SSCCCCCG---------G-GTTCTTCSEEECCSSCCCCC--G-GGTTCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred             cccccccc---------c-cchhhhhHHhhhhhhhhccc--c-cccccccccccccccccccCCcc---ccCCCCCCEEE
Confidence            65432110         1 12567777777777776531  1 13466777777777765432221   24556666665


Q ss_pred             C
Q 026286          163 P  163 (240)
Q Consensus       163 ~  163 (240)
                      .
T Consensus       179 l  179 (199)
T d2omxa2         179 I  179 (199)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=1.4e-08  Score=79.86  Aligned_cols=119  Identities=16%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      +++|++|.+.+|+|++  +..+ +.+++|++|++++| .++.-  .. ...+++|+.|.++.+.+...         ..+
T Consensus        39 l~~l~~L~l~~~~i~~--l~~l-~~l~nL~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~l~~n~~~~~---------~~l  102 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS--IDGV-EYLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQIADI---------TPL  102 (199)
T ss_dssp             HTTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCCC---------GGG
T ss_pred             hcCCCEEECCCCCCCC--cccc-ccCCCcCcCccccc-cccCc--cc-ccCCcccccccccccccccc---------ccc
Confidence            5689999999998775  3333 47899999999986 56642  22 35679999999987654221         112


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                       ..+++|++|++++|.++..   ..+.++++|+.|++++|......  . ...+++++.|..
T Consensus       103 -~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~--~-l~~~~~L~~L~l  157 (199)
T d2omxa2         103 -ANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISDIS--A-LSGLTSLQQLNF  157 (199)
T ss_dssp             -TTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEEC
T ss_pred             -ccccccccccccccccccc---cccchhhhhHHhhhhhhhhcccc--c-cccccccccccc
Confidence             3789999999999885532   12457899999999988644222  1 245677777665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=1.3e-08  Score=80.82  Aligned_cols=141  Identities=21%  Similarity=0.200  Sum_probs=81.1

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.+++-  .. .+++++|++|+|++|.|++  +..+ ..+++|+.|++++| +++.  +..+ ..+++|+.|.++
T Consensus        51 L~l~~~~i~~l--~~-l~~l~~L~~L~L~~n~i~~--l~~~-~~l~~L~~L~l~~n-~i~~--l~~l-~~l~~L~~L~l~  120 (210)
T d1h6ta2          51 IIANNSDIKSV--QG-IQYLPNVTKLFLNGNKLTD--IKPL-ANLKNLGWLFLDEN-KVKD--LSSL-KDLKKLKSLSLE  120 (210)
T ss_dssp             EECTTSCCCCC--TT-GGGCTTCCEEECCSSCCCC--CGGG-TTCTTCCEEECCSS-CCCC--GGGG-TTCTTCCEEECT
T ss_pred             EECcCCCCCCc--hh-HhhCCCCCEEeCCCccccC--cccc-ccCccccccccccc-cccc--cccc-cccccccccccc
Confidence            44555555542  22 3478999999999998875  3333 47899999999986 5664  3333 456889999987


Q ss_pred             eccCCCCC---------------ccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC
Q 026286           83 MHPLDTAD---------------KLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD  147 (240)
Q Consensus        83 ~~~~~~~~---------------~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~  147 (240)
                      .+.+....               ..+++.   .....+++|+++.+++|.++.  +.. +.++++|+.|+|++|....+.
T Consensus       121 ~~~~~~~~~l~~l~~l~~l~~~~n~l~~~---~~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         121 HNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             TSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred             ccccccccccccccccccccccccccccc---ccccccccccccccccccccc--ccc-ccCCCCCCEEECCCCCCCCCh
Confidence            65432110               011110   012245667777777776553  211 346677777777766432111


Q ss_pred             hHHHHhcCCCCcccc
Q 026286          148 DKFMKGNFPNLKVLG  162 (240)
Q Consensus       148 ~~~l~~~~~~L~~L~  162 (240)
                        . ...+++|++|.
T Consensus       195 --~-l~~l~~L~~L~  206 (210)
T d1h6ta2         195 --A-LAGLKNLDVLE  206 (210)
T ss_dssp             --G-GTTCTTCSEEE
T ss_pred             --h-hcCCCCCCEEE
Confidence              1 14455565554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=4.9e-09  Score=76.72  Aligned_cols=118  Identities=12%  Similarity=0.089  Sum_probs=82.7

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |++.+-.+++-  ..+ .++++|++|+|++|.|+.  +......+++|+.|++++| .++.  +..+ ..+|+|+.|.++
T Consensus         3 L~Ls~n~l~~l--~~l-~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N-~i~~--l~~~-~~l~~L~~L~l~   73 (124)
T d1dcea3           3 LHLAHKDLTVL--CHL-EQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPRLQELLLC   73 (124)
T ss_dssp             EECTTSCCSSC--CCG-GGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSSCCEEECC
T ss_pred             EEcCCCCCCCC--ccc-ccCCCCCEEECCCCccCc--chhhhhhhhcccccccccc-cccc--cCcc-ccccccCeEECC
Confidence            45566566533  233 478899999999998875  3332357999999999996 5664  3333 467999999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH--HHHHHhcCCcccEE
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFL  136 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~--l~~l~~~c~~Le~L  136 (240)
                      .|.+....      .+..+ ..+|+|+.|++++|.|+...  ...+...+|+|+.|
T Consensus        74 ~N~i~~~~------~~~~l-~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          74 NNRLQQSA------AIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCCSSS------TTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCccCCCC------Cchhh-cCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            88664221      11122 37899999999999986532  34566678998876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.57  E-value=9.4e-09  Score=81.17  Aligned_cols=120  Identities=19%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.|....+++-  ..+. .+++|+.|+|++|.|+.  +..+...+++|+.|++++| .++.  +..+ ..+++|+.|.++
T Consensus        53 L~Ls~n~I~~i--~~l~-~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N-~i~~--l~~~-~~l~~L~~L~L~  123 (198)
T d1m9la_          53 LALSTNNIEKI--SSLS-GMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGI-EKLVNLRVLYMS  123 (198)
T ss_dssp             EECSEEEESCC--CCHH-HHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEE-ECCC--HHHH-HHHHHSSEEEES
T ss_pred             eECcccCCCCc--cccc-CCccccChhhccccccc--ccccccccccccccccccc-cccc--cccc-cccccccccccc
Confidence            45555555542  2233 67899999999997764  3334445678999999996 5664  3333 345889999998


Q ss_pred             eccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHH---------HHHHHhcCCcccEEec
Q 026286           83 MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI---------VLKILSSCALLEFLDL  138 (240)
Q Consensus        83 ~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~---------l~~l~~~c~~Le~LdL  138 (240)
                      .|.+       ++-........+|+|++|+|++|.++...         ...++..+|+|+.||-
T Consensus       124 ~N~i-------~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         124 NNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             EEEC-------CCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cchh-------ccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            8854       33322222348999999999999865432         2345678999999984

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.54  E-value=7.3e-09  Score=82.91  Aligned_cols=142  Identities=16%  Similarity=0.132  Sum_probs=79.3

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEe
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN   82 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~   82 (240)
                      |.+.++.+++  +..+ .++++|++|+|++|.|+.  +.. ...+++|+.|++++|. ++.  +..++ .+++|+.|.++
T Consensus        46 L~l~~~~i~~--l~~l-~~l~~L~~L~ls~n~i~~--~~~-l~~l~~l~~l~~~~n~-~~~--i~~l~-~l~~L~~l~l~  115 (227)
T d1h6ua2          46 LSAFGTGVTT--IEGV-QYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNP-LKN--VSAIA-GLQSIKTLDLT  115 (227)
T ss_dssp             EECTTSCCCC--CTTG-GGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCC-CSC--CGGGT-TCTTCCEEECT
T ss_pred             EECCCCCCCc--chhH-hcCCCCcEeecCCceeec--ccc-cccccccccccccccc-ccc--ccccc-ccccccccccc
Confidence            4556666553  3333 478888888888887765  222 3478888888888753 442  23333 56888888886


Q ss_pred             eccCCCCC---------------ccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCC
Q 026286           83 MHPLDTAD---------------KLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD  147 (240)
Q Consensus        83 ~~~~~~~~---------------~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~  147 (240)
                      .+......               ..+...  .. ...+++|++|.+++|.+++..  . +.++++|+.|+|++|......
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~-~~~~~~L~~L~l~~n~~~~~~--~-l~~l~~L~~L~Ls~n~l~~l~  189 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNI--SP-LAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDNKISDIS  189 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccchhccccchhhhhchhhhhchh--hh-hccccccccccccccccccch--h-hcccccceecccCCCccCCCh
Confidence            54322100               011110  01 125566777777777654321  1 346677777777776432211


Q ss_pred             hHHHHhcCCCCccccC
Q 026286          148 DKFMKGNFPNLKVLGP  163 (240)
Q Consensus       148 ~~~l~~~~~~L~~L~~  163 (240)
                      .   ...+++|+.|..
T Consensus       190 ~---l~~l~~L~~L~L  202 (227)
T d1h6ua2         190 P---LASLPNLIEVHL  202 (227)
T ss_dssp             G---GGGCTTCCEEEC
T ss_pred             h---hcCCCCCCEEEC
Confidence            1   245566666655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.42  E-value=1.8e-07  Score=73.93  Aligned_cols=101  Identities=24%  Similarity=0.163  Sum_probs=64.7

Q ss_pred             CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           22 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        22 ~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      ..+|+.|.+.+|.|+.  +..+ +.+++|++|+|++| +++.  +..+ ..+++|+.|.++.|.+...         .. 
T Consensus        45 L~~L~~L~l~~~~i~~--l~~l-~~l~~L~~L~L~~n-~i~~--l~~~-~~l~~L~~L~l~~n~i~~l---------~~-  107 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKS--VQGI-QYLPNVTKLFLNGN-KLTD--IKPL-ANLKNLGWLFLDENKVKDL---------SS-  107 (210)
T ss_dssp             HHTCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSS-CCCC--CGGG-TTCTTCCEEECCSSCCCCG---------GG-
T ss_pred             hcCccEEECcCCCCCC--chhH-hhCCCCCEEeCCCc-cccC--cccc-ccCcccccccccccccccc---------cc-
Confidence            4579999999998765  2233 57999999999996 5764  3333 4689999999987765321         11 


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  142 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~  142 (240)
                      ...+++|+.|++++|.++.-  . .+.+++.|+.+++++|.
T Consensus       108 l~~l~~L~~L~l~~~~~~~~--~-~l~~l~~l~~l~~~~n~  145 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNK  145 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccc--c-ccccccccccccccccc
Confidence            12566777777766664321  1 12345555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.31  E-value=2.6e-09  Score=83.64  Aligned_cols=127  Identities=15%  Similarity=0.069  Sum_probs=85.9

Q ss_pred             ccccchhcHHHHHhC-CCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeecc
Q 026286            7 DFLCADVDLFPGSAS-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP   85 (240)
Q Consensus         7 ~~~~tD~~L~~i~~~-~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~   85 (240)
                      .+.|+...|..|-+. .+++++|.|++|.|+..........+++|+.|+|+++ .++... .......++|+.|.|+.|.
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~-~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIE-PNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEEECCSCC
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccc-cccccc-ccccccccccceeeecccc
Confidence            344666666655333 3589999999998864222333457899999999986 454322 2233456899999999887


Q ss_pred             CCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           86 LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        86 ~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      +.....    .    ....+++|++|+|++|.|+.-.. ..+.++++|++|+|+++...
T Consensus        90 l~~l~~----~----~F~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISN----K----MFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECS----S----SSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCH----H----HHhCCCcccccccCCccccccCH-HHhcCCcccccccccccccc
Confidence            643211    1    12378999999999999764211 22457899999999988754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=1.8e-07  Score=79.22  Aligned_cols=136  Identities=24%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             ccccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHH-------------
Q 026286            3 LCLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI-------------   69 (240)
Q Consensus         3 l~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l-------------   69 (240)
                      |.+.++.+++-  .. ...+++|+.|.+.+|.++.  +..+ ..+++|+.|+++++ .++.  +..+             
T Consensus       224 L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~--~~~~-~~~~~L~~L~l~~~-~l~~--~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         224 LSLNGNQLKDI--GT-LASLTNLTDLDLANNQISN--LAPL-SGLTKLTELKLGAN-QISN--ISPLAGLTALTNLELNE  294 (384)
T ss_dssp             EECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCC--CGGG-TTCTTCSEEECCSS-CCCC--CGGGTTCTTCSEEECCS
T ss_pred             EECCCCCCCCc--ch-hhcccccchhccccCccCC--CCcc-cccccCCEeeccCc-ccCC--CCccccccccccccccc
Confidence            34555555542  22 2367888999988887764  2223 36788888888775 3432  1111             


Q ss_pred             --------HhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCC
Q 026286           70 --------GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  141 (240)
Q Consensus        70 --------~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C  141 (240)
                              ...+++++.|.++.+.+.       +  ... ...+|+|++|+|++|+|+.  +.. +.+|++|++|+|++|
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~-------~--l~~-l~~l~~L~~L~L~~n~l~~--l~~-l~~l~~L~~L~l~~N  361 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNIS-------D--ISP-VSSLTKLQRLFFANNKVSD--VSS-LANLTNINWLSAGHN  361 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCS-------C--CGG-GGGCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSS
T ss_pred             cccccccccchhcccCeEECCCCCCC-------C--Ccc-cccCCCCCEEECCCCCCCC--Chh-HcCCCCCCEEECCCC
Confidence                    223444555555443321       1  111 2367788888888887764  222 456788888888777


Q ss_pred             CCCCCChHHHHhcCCCCccccC
Q 026286          142 WDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       142 ~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      ....+..   ...+++|+.|..
T Consensus       362 ~l~~l~~---l~~l~~L~~L~L  380 (384)
T d2omza2         362 QISDLTP---LANLTRITQLGL  380 (384)
T ss_dssp             CCCBCGG---GTTCTTCSEEEC
T ss_pred             cCCCChh---hccCCCCCEeeC
Confidence            5442222   245667776654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.5e-08  Score=83.07  Aligned_cols=57  Identities=19%  Similarity=0.103  Sum_probs=32.7

Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      .+++|+.|++++|+|+.... ..+..+++|++|+|++|...++....  ...++|+.|..
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~L~~lp~~~--~~~~~L~~L~L  202 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPKGF--FGSHLLPFAFL  202 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT--TTTCCCSEEEC
T ss_pred             ccccchhcccccccccccCc-cccccccccceeecccCCCcccChhH--CCCCCCCEEEe
Confidence            45677777777777653221 22345677777777777654443322  23455666555

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.1e-07  Score=69.06  Aligned_cols=91  Identities=24%  Similarity=0.223  Sum_probs=54.8

Q ss_pred             HHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCC
Q 026286           66 LEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  145 (240)
Q Consensus        66 l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~  145 (240)
                      +..+...+|+|+.|+|+.|.+...      ..+......+++|+.|+|++|.|++-.-...++ .+.|+.|++++++...
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l------~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRL------DDMSSIVQKAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCC------SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSS
T ss_pred             hHHHHHhCCCCCEeeCCCccccCC------chhHHHHhhCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCc
Confidence            445556678888888877755321      111222346788888888888877533333343 4468888888876543


Q ss_pred             CCh-H-----HHHhcCCCCccccC
Q 026286          146 LDD-K-----FMKGNFPNLKVLGP  163 (240)
Q Consensus       146 ~~~-~-----~l~~~~~~L~~L~~  163 (240)
                      ... .     .+.+.+|+|++|..
T Consensus       130 ~~~~~~~y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         130 TFRDQSTYISAIRERFPKLLRLDG  153 (162)
T ss_dssp             SSSSHHHHHHHHHTTSTTCCEETT
T ss_pred             CcccchhHHHHHHHHCCCCCEECc
Confidence            211 1     34467788887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.09  E-value=1.5e-06  Score=73.26  Aligned_cols=129  Identities=20%  Similarity=0.198  Sum_probs=90.0

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCc--------
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADK--------   91 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~--------   91 (240)
                      ..+++|++|++.+|.+++  +.. ...+++|+.|++++|. ++.  +..+ ..+++|+.|.++.+.+.....        
T Consensus       216 ~~~~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~--~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~l~  288 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD--IGT-LASLTNLTDLDLANNQ-ISN--LAPL-SGLTKLTELKLGANQISNISPLAGLTALT  288 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSC-CCC--CGGG-TTCTTCSEEECCSSCCCCCGGGTTCTTCS
T ss_pred             cccCCCCEEECCCCCCCC--cch-hhcccccchhccccCc-cCC--CCcc-cccccCCEeeccCcccCCCCccccccccc
Confidence            357899999999998876  223 3478999999999974 654  2233 457999999997765432110        


Q ss_pred             -------cCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286           92 -------LSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  164 (240)
Q Consensus        92 -------~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  164 (240)
                             .+..  . .-...+++|++|++++|++++.  .. +..+|+|++|+|++|......  .+ ..+++|+.|...
T Consensus       289 ~l~~~~n~l~~--~-~~~~~~~~l~~L~ls~n~l~~l--~~-l~~l~~L~~L~L~~n~l~~l~--~l-~~l~~L~~L~l~  359 (384)
T d2omza2         289 NLELNENQLED--I-SPISNLKNLTYLTLYFNNISDI--SP-VSSLTKLQRLFFANNKVSDVS--SL-ANLTNINWLSAG  359 (384)
T ss_dssp             EEECCSSCCSC--C-GGGGGCTTCSEEECCSSCCSCC--GG-GGGCTTCCEEECCSSCCCCCG--GG-GGCTTCCEEECC
T ss_pred             ccccccccccc--c-cccchhcccCeEECCCCCCCCC--cc-cccCCCCCEEECCCCCCCCCh--hH-cCCCCCCEEECC
Confidence                   1111  1 1134779999999999998753  22 568999999999999643222  23 578899988873

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.1e-07  Score=78.32  Aligned_cols=131  Identities=18%  Similarity=0.129  Sum_probs=87.7

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ..+++|++|.|++|.+.... ......+++|+.++++++ .++.-. ....+.+++|+.|.++.|.+...    ..   .
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~N-~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l----~~---~  171 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGNRISSV----PE---R  171 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCEE----CT---T
T ss_pred             cccccCCEEecCCccccccc-ccccchhcccchhhhccc-cccccC-hhHhccccchhhcccccCccccc----ch---h
Confidence            36788999999998654321 122335788999999885 455321 22234668899999987765321    11   1


Q ss_pred             HHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286          100 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      + ...+++|++|.+++|+++... ...+.++++|++|++++|...+.....+ ..+++|+.|..
T Consensus       172 ~-f~~l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~~~~~-~~~~~L~~L~l  232 (284)
T d1ozna_         172 A-FRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRL  232 (284)
T ss_dssp             T-TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEEC
T ss_pred             h-hccccccchhhhhhccccccC-hhHhhhhhhccccccccccccccccccc-ccccccCEEEe
Confidence            1 237789999999999876422 2335678999999999988776665554 56788888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4e-07  Score=69.12  Aligned_cols=90  Identities=18%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             HHHHHHhcCccCcEEEecCCCCCCH-HHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcc
Q 026286           39 IVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV  117 (240)
Q Consensus        39 ~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~  117 (240)
                      .+..+...+++|+.|+|++| +|+. ..+......||+|+.|.++.|.+.       +-...... ..++|++|.+++|.
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-------~l~~l~~l-~~~~L~~L~L~~Np  126 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELK-------SERELDKI-KGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCC-------CGGGHHHH-TTCCCSSCCCTTST
T ss_pred             hhHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccc-------cchhhhhh-hccccceeecCCCC
Confidence            34556667999999999996 4654 234444567899999999887653       21112222 45679999999998


Q ss_pred             cCH------HHHHHHHhcCCcccEEe
Q 026286          118 IST------EIVLKILSSCALLEFLD  137 (240)
Q Consensus       118 it~------~~l~~l~~~c~~Le~Ld  137 (240)
                      |+.      .-...+.+.+|+|+.||
T Consensus       127 l~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         127 LSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcCcccchhHHHHHHHHCCCCCEEC
Confidence            652      34567788899999996

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.1e-08  Score=81.16  Aligned_cols=148  Identities=18%  Similarity=0.119  Sum_probs=78.4

Q ss_pred             ccchhcHHHHHhCC-CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCC
Q 026286            9 LCADVDLFPGSASA-GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD   87 (240)
Q Consensus         9 ~~tD~~L~~i~~~~-~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~   87 (240)
                      .|+...|..|-... ++|++|+|++|.|+.-....+ ..+++|++|+|++| +++.  +..+ ..+++|+.|.|+.|.+.
T Consensus        16 ~C~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f-~~l~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~Ls~N~l~   90 (266)
T d1p9ag_          16 NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATL-MPYTRLTQLNLDRA-ELTK--LQVD-GTLPVLGTLDLSHNQLQ   90 (266)
T ss_dssp             ECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGG-TTCTTCCEEECTTS-CCCE--EECC-SCCTTCCEEECCSSCCS
T ss_pred             EccCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHh-hccccccccccccc-cccc--cccc-ccccccccccccccccc
Confidence            46666665553333 478899999888764211222 46888999999886 5653  2222 35688888888777653


Q ss_pred             CCCccCC-----------h----HHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHH
Q 026286           88 TADKLSQ-----------D----DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  152 (240)
Q Consensus        88 ~~~~~~~-----------d----~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~  152 (240)
                      .......           .    .........+++|++|.+++|.++.-. ..+...+++|+.|++++|.........+ 
T Consensus        91 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~~~~~-  168 (266)
T d1p9ag_          91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLL-  168 (266)
T ss_dssp             SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTT-
T ss_pred             ccccccccccccccccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccccccCcccc-
Confidence            2111000           0    000000113344455555555433211 1223356777777777775443333222 


Q ss_pred             hcCCCCccccC
Q 026286          153 GNFPNLKVLGP  163 (240)
Q Consensus       153 ~~~~~L~~L~~  163 (240)
                      ..+++|+.|..
T Consensus       169 ~~l~~L~~L~L  179 (266)
T d1p9ag_         169 NGLENLDTLLL  179 (266)
T ss_dssp             TTCTTCCEEEC
T ss_pred             ccccccceeec
Confidence            45666776655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.96  E-value=1e-06  Score=69.90  Aligned_cols=134  Identities=19%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             cccccccchhcHHHHHhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286            4 CLLDFLCADVDLFPGSASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM   83 (240)
Q Consensus         4 ~~~~~~~tD~~L~~i~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~   83 (240)
                      .+..+.+++  +..++ .+++|+.+.++++.+..  +..+ ...+.++.+.++.+. +...  .. ...+++|+.|.++.
T Consensus        91 ~~~~n~~~~--i~~l~-~l~~L~~l~l~~~~~~~--~~~~-~~~~~~~~l~~~~~~-~~~~--~~-~~~~~~L~~L~l~~  160 (227)
T d1h6ua2          91 ELSGNPLKN--VSAIA-GLQSIKTLDLTSTQITD--VTPL-AGLSNLQVLYLDLNQ-ITNI--SP-LAGLTNLQYLSIGN  160 (227)
T ss_dssp             ECCSCCCSC--CGGGT-TCTTCCEEECTTSCCCC--CGGG-TTCTTCCEEECCSSC-CCCC--GG-GGGCTTCCEEECCS
T ss_pred             ccccccccc--ccccc-ccccccccccccccccc--cchh-ccccchhhhhchhhh-hchh--hh-hccccccccccccc
Confidence            344444443  33344 68999999999986554  2222 367899999998864 4432  12 24679999999987


Q ss_pred             ccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccC
Q 026286           84 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  163 (240)
Q Consensus        84 ~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~  163 (240)
                      +.+..       .  ..+ ..+++|++|+|++|++++  +.. +.++|+|++|+|++|...+...   ...+++|+.|..
T Consensus       161 n~~~~-------~--~~l-~~l~~L~~L~Ls~n~l~~--l~~-l~~l~~L~~L~Ls~N~lt~i~~---l~~l~~L~~L~l  224 (227)
T d1h6ua2         161 AQVSD-------L--TPL-ANLSKLTTLKADDNKISD--ISP-LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTL  224 (227)
T ss_dssp             SCCCC-------C--GGG-TTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEE
T ss_pred             ccccc-------c--hhh-cccccceecccCCCccCC--Chh-hcCCCCCCEEECcCCcCCCCcc---cccCCCCCEEEe
Confidence            75421       1  112 378999999999999875  222 5689999999999995332221   257777777654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.85  E-value=2.3e-07  Score=72.19  Aligned_cols=124  Identities=14%  Similarity=0.044  Sum_probs=82.4

Q ss_pred             CcEEEeeCCCCCHHHHHHHHhc-CccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHHh
Q 026286           25 LQTLRLPRSEMSDSIVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  103 (240)
Q Consensus        25 L~~L~L~~~~itd~~l~~l~~~-~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~~  103 (240)
                      .++++.++++++.  +   -+. .+++++|+|++| .|+..........+++|+.|.++.+.+.....        ....
T Consensus        10 ~~~v~Cs~~~L~~--i---P~~lp~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~--------~~~~   75 (192)
T d1w8aa_          10 GTTVDCTGRGLKE--I---PRDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEP--------NAFE   75 (192)
T ss_dssp             TTEEECTTSCCSS--C---CSCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT--------TTTT
T ss_pred             CCEEEEeCCCcCc--c---CCCCCCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccc--------cccc
Confidence            4567777776552  1   112 368999999995 56642222333567999999998776532210        1223


Q ss_pred             cCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCCCCChHHHHhcCCCCccccCC
Q 026286          104 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  164 (240)
Q Consensus       104 ~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~  164 (240)
                      .+++|++|+|++|+|+.-.. ..+.++++|++|+|+++...++....+ ...++|++|...
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~-~~F~~l~~L~~L~L~~N~l~~i~~~~f-~~l~~L~~l~L~  134 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLA  134 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECT
T ss_pred             cccccceeeeccccccccCH-HHHhCCCcccccccCCccccccCHHHh-cCCccccccccc
Confidence            67999999999999774221 234689999999999998765555433 456778777663

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.84  E-value=1.7e-07  Score=78.06  Aligned_cols=112  Identities=18%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             CCCcEEEeeCCCCCHHH-HHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSI-VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  101 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~-l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i  101 (240)
                      .+++.|+|++++++... +..-..++++|++|+|++|+.++......++ .+++|++|.|+.|.+....        ...
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N~l~~~~--------~~~  120 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAI--------PDF  120 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEECCEEEC--------CGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccc-cccccchhhhccccccccc--------ccc
Confidence            36999999998776421 3333458999999999986666654334454 5799999999887653211        011


Q ss_pred             HhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          102 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       102 ~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ...+++|+++++++|.++.. +..-+.+++.|+.++++++...
T Consensus       121 ~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l~l~~n~l~  162 (313)
T d1ogqa_         121 LSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRIS  162 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccchhhhccccccccccccc-CchhhccCcccceeeccccccc
Confidence            23678899999998874421 1223457888999999887654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=7.3e-07  Score=73.17  Aligned_cols=114  Identities=18%  Similarity=0.072  Sum_probs=79.8

Q ss_pred             HhCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHH
Q 026286           19 SASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA   98 (240)
Q Consensus        19 ~~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~   98 (240)
                      ...+++|+.+.+++|.|+.-. ......+++|+.|++++| .++.-.. .....+++|+.|.++.|.+....    ..  
T Consensus       125 ~~~~~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N-~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~----~~--  195 (284)
T d1ozna_         125 FRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLLLHQNRVAHVH----PH--  195 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSCCCEEC----TT--
T ss_pred             cchhcccchhhhccccccccC-hhHhccccchhhcccccC-cccccch-hhhccccccchhhhhhccccccC----hh--
Confidence            345788999999999776421 223347899999999996 4653211 22346799999999877553211    11  


Q ss_pred             HHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286           99 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus        99 ~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                       . ...+++|++|++++|+++.... ..+..+++|++|+|+++...
T Consensus       196 -~-f~~l~~L~~L~l~~N~i~~~~~-~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         196 -A-FRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             -T-TTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEE
T ss_pred             -H-hhhhhhcccccccccccccccc-cccccccccCEEEecCCCCC
Confidence             1 2378999999999999765333 34568999999999997644

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.2e-06  Score=65.98  Aligned_cols=109  Identities=19%  Similarity=0.121  Sum_probs=62.9

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      .....++..+++++.. ... ...+++|++|+|++++.++.-...++ ..+++|+.|.|+.|.+....    .   .+ .
T Consensus         8 ~~~~~l~c~~~~~~~~-p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~----~---~~-f   76 (156)
T d2ifga3           8 HGSSGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVA----P---DA-F   76 (156)
T ss_dssp             SSSSCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEEC----T---TG-G
T ss_pred             CCCCeEEecCCCCccC-ccc-ccCccccCeeecCCCccccccCchhh-ccccccCcceeeccccCCcc----c---cc-c
Confidence            3455677776655431 111 23567888888876555553222222 34688888888777653221    1   11 2


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ..+++|++|+|++|+|+.-.. .++ ....|+.|+|+++.-.
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~-~~~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          77 HFTPRLSRLNLSFNALESLSW-KTV-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GSCSCCCEEECCSSCCSCCCS-TTT-CSCCCCEEECCSSCCC
T ss_pred             cccccccceeccCCCCcccCh-hhh-ccccccccccCCCccc
Confidence            367888888888888653111 112 2346888888887643

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.53  E-value=3.8e-06  Score=69.19  Aligned_cols=108  Identities=16%  Similarity=0.173  Sum_probs=61.9

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|+.+++.+|.++.  +.  ...+++|+.|++++|. ++...... ...+++++.|.++.+.+....       . .
T Consensus       148 ~l~~L~~l~l~~n~l~~--l~--~~~~~~L~~L~l~~n~-~~~~~~~~-~~~~~~l~~L~~s~n~l~~~~-------~-~  213 (305)
T d1xkua_         148 GMKKLSYIRIADTNITT--IP--QGLPPSLTELHLDGNK-ITKVDAAS-LKGLNNLAKLGLSFNSISAVD-------N-G  213 (305)
T ss_dssp             GCTTCCEEECCSSCCCS--CC--SSCCTTCSEEECTTSC-CCEECTGG-GTTCTTCCEEECCSSCCCEEC-------T-T
T ss_pred             cccccCccccccCCccc--cC--cccCCccCEEECCCCc-CCCCChhH-hhccccccccccccccccccc-------c-c
Confidence            45677777777775543  11  1136677777777753 33322222 245577777777655442211       0 1


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      ....+++|+.|+|++|+|+.  +..-+.++++|++|+|++|...
T Consensus       214 ~~~~l~~L~~L~L~~N~L~~--lp~~l~~l~~L~~L~Ls~N~i~  255 (305)
T d1xkua_         214 SLANTPHLRELHLNNNKLVK--VPGGLADHKYIQVVYLHNNNIS  255 (305)
T ss_dssp             TGGGSTTCCEEECCSSCCSS--CCTTTTTCSSCCEEECCSSCCC
T ss_pred             cccccccceeeecccccccc--cccccccccCCCEEECCCCccC
Confidence            11267788888888887653  2222446788888888877544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.52  E-value=5.3e-06  Score=68.33  Aligned_cols=111  Identities=17%  Similarity=0.022  Sum_probs=77.2

Q ss_pred             CCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHH
Q 026286           21 SAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  100 (240)
Q Consensus        21 ~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~  100 (240)
                      .+++|++|++.+|.++...... ...++.++.|++++| .++.-.. .....+++|++|.|+.|.+...    .    .+
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~~-~~~~~~l~~L~~s~n-~l~~~~~-~~~~~l~~L~~L~L~~N~L~~l----p----~~  237 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFN-SISAVDN-GSLANTPHLRELHLNNNKLVKV----P----GG  237 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSS-CCCEECT-TTGGGSTTCCEEECCSSCCSSC----C----TT
T ss_pred             cCCccCEEECCCCcCCCCChhH-hhccccccccccccc-ccccccc-ccccccccceeeeccccccccc----c----cc
Confidence            3679999999999766433223 357899999999996 4654322 2335689999999987765321    1    11


Q ss_pred             HHhcCCCCCEEEeeCcccCHHHHH-----HHHhcCCcccEEeccCCCC
Q 026286          101 IASTMPKLKRLEMAYHVISTEIVL-----KILSSCALLEFLDLRGCWD  143 (240)
Q Consensus       101 i~~~~~~L~~L~L~~~~it~~~l~-----~l~~~c~~Le~LdL~~C~~  143 (240)
                      + ..+++|++|+|++|+|+.-.-.     .+....+.|+.|+|+++..
T Consensus       238 l-~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         238 L-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             T-TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             c-ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            2 3689999999999998752111     1233457899999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.26  E-value=5.4e-05  Score=62.35  Aligned_cols=96  Identities=15%  Similarity=0.129  Sum_probs=67.1

Q ss_pred             CCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHHHHH
Q 026286           23 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  102 (240)
Q Consensus        23 ~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~~i~  102 (240)
                      .+|++|+|++++++.  +.   ...++|++|+|++| +++.     +....++|+.|.+..+.+....            
T Consensus        38 ~~l~~LdLs~~~L~~--lp---~~~~~L~~L~Ls~N-~l~~-----lp~~~~~L~~L~l~~n~l~~l~------------   94 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--LP---ELPPHLESLVASCN-SLTE-----LPELPQSLKSLLVDNNNLKALS------------   94 (353)
T ss_dssp             HTCSEEECTTSCCSC--CC---SCCTTCSEEECCSS-CCSS-----CCCCCTTCCEEECCSSCCSCCC------------
T ss_pred             cCCCEEEeCCCCCCC--CC---CCCCCCCEEECCCC-CCcc-----cccchhhhhhhhhhhcccchhh------------
Confidence            479999999997763  22   34688999999975 5662     3344578999999776543211            


Q ss_pred             hcCCCCCEEEeeCcccCHHHHHHHHhcCCcccEEeccCCCCC
Q 026286          103 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  144 (240)
Q Consensus       103 ~~~~~L~~L~L~~~~it~~~l~~l~~~c~~Le~LdL~~C~~v  144 (240)
                      .-.+.|++|++++|.|+.  +.. ...+++|++|++++|...
T Consensus        95 ~lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          95 DLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS
T ss_pred             hhcccccccccccccccc--ccc-hhhhccceeecccccccc
Confidence            122579999999998764  222 346789999999887654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.02  E-value=3e-06  Score=70.22  Aligned_cols=129  Identities=15%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             ccccccccchh-cHHHHHhCCCCCcEEEeeC-CCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEE
Q 026286            3 LCLLDFLCADV-DLFPGSASAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC   80 (240)
Q Consensus         3 l~~~~~~~tD~-~L~~i~~~~~~L~~L~L~~-~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~   80 (240)
                      |+|.+...+-. .+..-...+++|++|+|++ |+++.. +..-..++++|++|+|++| +++... ......+++|+.+.
T Consensus        55 L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N-~l~~~~-~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHT-NVSGAI-PDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEE-CCEEEC-CGGGGGCTTCCEEE
T ss_pred             EECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccc-cccccc-cccccchhhhcccc
Confidence            45555544422 2322233789999999997 455432 2222347999999999996 454422 22345678999999


Q ss_pred             EeeccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCHHHHHHHHhcCCcc-cEEeccCCCC
Q 026286           81 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL-EFLDLRGCWD  143 (240)
Q Consensus        81 L~~~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~~~l~~l~~~c~~L-e~LdL~~C~~  143 (240)
                      ++.|.+...   +.    .. ...+++|+++++++|.++.. +...+..++.+ +.++++++..
T Consensus       132 l~~N~~~~~---~p----~~-l~~l~~L~~l~l~~n~l~~~-ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         132 FSYNALSGT---LP----PS-ISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCSSEEESC---CC----GG-GGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccc---Cc----hh-hccCcccceeeccccccccc-cccccccccccccccccccccc
Confidence            976643211   11    11 23788999999999886532 11222344444 7777766543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=1.7e-06  Score=68.85  Aligned_cols=102  Identities=12%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             cccchhcHHHHHhCC-CCCcEEEeeCCCCCHHHHHH-HHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee-c
Q 026286            8 FLCADVDLFPGSASA-GSLQTLRLPRSEMSDSIVAQ-IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-H   84 (240)
Q Consensus         8 ~~~tD~~L~~i~~~~-~~L~~L~L~~~~itd~~l~~-l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~   84 (240)
                      +.|++..+..+-... +++++|+|++|.|+.  +.. ....+++|++|+|++|.. +...-......+++++.|.+.. +
T Consensus        13 i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls~n~~-~~~i~~~~f~~l~~l~~l~~~~~n   89 (242)
T d1xwdc1          13 FLCQESKVTEIPSDLPRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDV-LEVIEADVFSNLPKLHEIRIEKAN   89 (242)
T ss_dssp             EEEESCSCSSCCSCSCSCCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEESCTT-CCEECSSSEESCTTCCEEEEECCT
T ss_pred             EEEeCCCCCCcCCCCCCCCCEEECcCCcCCc--cChhHhhccchhhhhhhccccc-cceeeccccccccccccccccccc
Confidence            345555555554443 489999999998763  221 234689999999998643 3211111224578888888753 3


Q ss_pred             cCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccCH
Q 026286           85 PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  120 (240)
Q Consensus        85 ~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it~  120 (240)
                      .+....    .    .....+++|++|.+++|.++.
T Consensus        90 ~l~~~~----~----~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          90 NLLYIN----P----EAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TCCEEC----T----TSEECCTTCCEEEEESCCCCS
T ss_pred             cccccc----c----ccccccccccccccchhhhcc
Confidence            322111    0    012367899999999988764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00011  Score=54.78  Aligned_cols=100  Identities=12%  Similarity=0.088  Sum_probs=65.2

Q ss_pred             cccchhcHHHHH---hCCCCCcEEEeeCC-CCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEee
Q 026286            8 FLCADVDLFPGS---ASAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM   83 (240)
Q Consensus         8 ~~~tD~~L~~i~---~~~~~L~~L~L~~~-~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~   83 (240)
                      +.|+...+..+-   ...++|++|+|.++ .|+.-.... ...+++|+.|+|++| +|+.-... ....+++|+.|.|+.
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSF   89 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCS
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCcccc-cccccccccceeccC
Confidence            445554443332   24578999999876 576422222 346899999999996 56642222 235679999999998


Q ss_pred             ccCCCCCccCChHHHHHHHhcCCCCCEEEeeCcccC
Q 026286           84 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  119 (240)
Q Consensus        84 ~~~~~~~~~~~d~~~~~i~~~~~~L~~L~L~~~~it  119 (240)
                      |.+......    .    . ...+|++|+|++|.+.
T Consensus        90 N~l~~l~~~----~----~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWK----T----V-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCST----T----T-CSCCCCEEECCSSCCC
T ss_pred             CCCcccChh----h----h-ccccccccccCCCccc
Confidence            877532211    1    1 3457999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=1.5e-05  Score=63.24  Aligned_cols=66  Identities=12%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccC
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL   86 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~   86 (240)
                      ..+++|++|+|++|.+....-......+++++.|.+..++.++..... ....+++|+.|.+..+.+
T Consensus        50 ~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~-~~~~l~~L~~l~l~~~~l  115 (242)
T d1xwdc1          50 SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE-AFQNLPNLQYLLISNTGI  115 (242)
T ss_dssp             TTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTT-SEECCTTCCEEEEESCCC
T ss_pred             hccchhhhhhhccccccceeeccccccccccccccccccccccccccc-cccccccccccccchhhh
Confidence            468999999999996643111112235788899988876666543222 235678999999976654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.01  E-value=0.0014  Score=53.41  Aligned_cols=79  Identities=13%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             hCCCCCcEEEeeCCCCCHHHHHHHHhcCccCcEEEecCCCCCCHHHHHHHHhcCCCCcEEEEeeccCCCCCccCChHHHH
Q 026286           20 ASAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN   99 (240)
Q Consensus        20 ~~~~~L~~L~L~~~~itd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~~~~~~d~~~~   99 (240)
                      ...++|++|.|++|+|+.     +.....+|+.|+++++ .++.     +....++|++|.++.+.+...    .     
T Consensus        55 ~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~l~~n-~l~~-----l~~lp~~L~~L~L~~n~l~~l----p-----  114 (353)
T d1jl5a_          55 ELPPHLESLVASCNSLTE-----LPELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEKL----P-----  114 (353)
T ss_dssp             SCCTTCSEEECCSSCCSS-----CCCCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSSC----C-----
T ss_pred             CCCCCCCEEECCCCCCcc-----cccchhhhhhhhhhhc-ccch-----hhhhccccccccccccccccc----c-----
Confidence            346799999999998873     2234678999999986 4442     222335799999987765321    1     


Q ss_pred             HHHhcCCCCCEEEeeCcccC
Q 026286          100 AIASTMPKLKRLEMAYHVIS  119 (240)
Q Consensus       100 ~i~~~~~~L~~L~L~~~~it  119 (240)
                      .+ ..+++|++|+++++.++
T Consensus       115 ~~-~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         115 EL-QNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CC-TTCTTCCEEECCSSCCS
T ss_pred             ch-hhhccceeecccccccc
Confidence            11 26788999999888754