Citrus Sinensis ID: 026295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR
Secondary Structure (PSIPRED)
cccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEEEEEccccccEEEEEEcccccccEEEEEEccccEEEEcccccccccccEEEEEEEccccccEEEEEEcccccccEEEEEEcccEEEEEEEccccccccEEEEEEEEcEEEEEEEcccccccEEEEEEccccccccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEcccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccEEEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEEEccccccccEEEEEEEccccccEcEEEEcccHcccEEEEEccccEEEEEEEcccccccccEEEEEcccccccccccccccccccEEEccccccccccccEEEEEccccccccEEEEEEEccccccEEEEcHccccccccccHEEHcccccccc
Coil and Loop (DISEMBL)
MDKAVATldkgttssswnycgqrlatgstdgtlsifdspdpssssftcnlktkvhAGAILKvvwvppefgdavACICSDGSLLLWEEIVEDAQPLQWKLCksfeststqvldVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIsasiswnpqkgenqgssfvlgfnsdtpqlnsskvwefdeahnrwlpvaelalpedrsdeVYAVAWALNIGR
Flexible Loop (DISEMBL)
mdkavatldkgttssswnycGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAelalpedrsdeVYAVAWALNIGR
Low Complexity Region (SEG)
MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIfdspdpssssfTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR
Disordered region (IsUnstruct)
****************WNYCGQRLA********************FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWN**********FVLGFN*******SSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI**
Disordered Region (DISOPRED)
**KA*ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR
Disordered Region (DISEMBL)
*************SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR
Disordered Region (DISPRO)
**KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
C1BK83	364	Nucleoporin seh1 OS=Osmer	N/A	no	0.870	0.574	0.298	8e-21
Q4FZW5	360	Nucleoporin seh1-A OS=Xen	N/A	no	0.870	0.580	0.281	2e-20
Q5U4Y8	360	Nucleoporin seh1 OS=Xenop	yes	no	0.870	0.580	0.281	3e-20
Q6GNF1	360	Nucleoporin seh1-B OS=Xen	N/A	no	0.870	0.580	0.281	4e-20
A7YY75	360	Nucleoporin SEH1 OS=Bos t	yes	no	0.870	0.580	0.294	5e-20
Q5RAN6	360	Nucleoporin SEH1 OS=Pongo	yes	no	0.870	0.580	0.281	5e-20
Q96EE3	360	Nucleoporin SEH1 OS=Homo	yes	no	0.870	0.580	0.281	5e-20
Q8R2U0	360	Nucleoporin SEH1 OS=Mus m	yes	no	0.870	0.580	0.281	2e-19
Q6TGU2	364	Nucleoporin seh1 OS=Danio	yes	no	0.870	0.574	0.281	9e-19
A8WVD2	366	Nucleoporin SEH1 OS=Caeno	N/A	no	0.604	0.396	0.298	5e-11

>sp|C1BK83|SEH1_OSMMO Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1

 Score =  100 bits (250), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  D  +  + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SYDFHGRRMATCSSDQSVKVWDKSD--NGEWNCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTS-----TQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++   Q  L    + T+     T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query: 191 F-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
             +S+T      +++E+ E   ++  V  L      +D V+ +A+A N+GR
Sbjct: 186 SDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.
Osmerus mordax (taxid: 8014)

>sp|Q4FZW5|SEH1A_XENLA Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-a PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  + ++ C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--NGNWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E   ++     L      SD V+ +A+A N+GR
Sbjct: 186 SDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Xenopus laevis (taxid: 8355)

>sp|Q5U4Y8|SEH1_XENTR Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  +  + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--NGDWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E   ++     L      SD V+ +A+A N+GR
Sbjct: 186 SDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GNF1|SEH1B_XENLA Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-b PE=2 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  + ++ C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--NVNWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E   ++     L      SD V+ +A+A N+GR
Sbjct: 186 SDDSSPNIMGKVQIYEYNENTRKYAKAETLM---SVSDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Xenopus laevis (taxid: 8355)

>sp|A7YY75|SEH1_BOVIN Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 112/231 (48%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  S  + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--SGEWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E + R    AE  L    +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLLTV--TDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Bos taurus (taxid: 9913)

>sp|Q5RAN6|SEH1_PONAB Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  S  + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--SGDWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E   ++     L      +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Pongo abelii (taxid: 9601)

>sp|Q96EE3|SEH1_HUMAN Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  S  + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--SGDWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct: 137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E   ++     L      +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNAMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Homo sapiens (taxid: 9606)

>sp|Q8R2U0|SEH1_MOUSE Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  +  S  + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SFDFHGRRMATCSSDQSVKVWDKSE--SGDWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++         W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V+VYE  D + L  W LQ E    +          C S  ISWNP           +G
Sbjct: 137 GIVRVYEAPDVMNLSQWSLQHEVSCKL----------CCSC-ISWNPSSSRAHPPMIAVG 185

Query: 191 FNSDTPQ-LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
            +  +P  +   +++E++E   ++     L      +D V+ +A+A N+GR
Sbjct: 186 SDDSSPNSMAKVQIFEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Mus musculus (taxid: 10090)

>sp|Q6TGU2|SEH1_DANRE Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2

 Score = 94.0 bits (232), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 108/231 (46%), Gaps = 22/231 (9%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           S+++ G+R+AT S+D ++ ++D  D     + C    K H+G++ +V W  PEFG  +A 
Sbjct: 19  SYDFHGRRMATCSSDQSVKVWDKGD--DGEWHCTASWKTHSGSVWRVTWAHPEFGQVLAS 76

Query: 76  ICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
              D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +D
Sbjct: 77  CSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSAD 136

Query: 131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
           G V++YE  D + L  W LQ E            K +C  + ISWNP           +G
Sbjct: 137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLAC--SCISWNPSSSRAHPPMIAVG 185

Query: 191 F-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
             +S+       ++ E++E   ++     L      +D V+ +A+A N+GR
Sbjct: 186 GDDSNGAYSGKVQIHEYNENTRKYAKAETLMTV---TDPVHDIAFAPNLGR 233

Component of the Nup107-160 subcomplex of the nuclear pore complex (NPC). The Nup107-160 subcomplex is required for the assembly of a functional NPC. The Nup107-160 subcomplex is also required for normal kinetochore microtubule attachment, mitotic progression and chromosome segregation. This subunit plays a role in recruitment of the Nup107-160 subcomplex to the kinetochore.

Danio rerio (taxid: 7955)

>sp|A8WVD2|SEH1_CAEBR Nucleoporin SEH1 OS=Caenorhabditis briggsae GN=npp-18 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 21  GQRLATGSTDGTLSIFDS-PDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD 79
           G+R+AT ++D T++I+D  PD    ++  +   K H GA+ +V+W  PEFG  VA    D
Sbjct: 32  GRRMATCASDMTMAIWDRQPD---GNWRRSAHWKCHGGAVWRVIWAHPEFGQIVASCSYD 88

Query: 80  GSLLLWEE-IVEDAQPL-----QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133
            ++++WEE IV   + L     QW          + V D+ F      L L +    G V
Sbjct: 89  RTIVIWEEQIVRTEKDLKCKESQWIRRTIISDNRSDVTDICFSPRHLGLSLASCNVLGAV 148

Query: 134 KVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASIS 174
           ++YE  D +    W L  E Q          +  C++ S+S
Sbjct: 149 RIYEAPDVVDASRWNLIHELQ------AFHTRCGCVTWSLS 183

Probable component of the nuclear pore complex (NPC) which is involved in the trafficking of macromolecules between the cytoplasm and nucleus.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
147790324	325	hypothetical protein VITISV_003214 [Viti	1.0	0.738	0.754	1e-104
359474079	325	PREDICTED: nucleoporin SEH1-like [Vitis	1.0	0.738	0.75	1e-104
224072178	325	predicted protein [Populus trichocarpa]	1.0	0.738	0.741	1e-102
255537741	340	nucleotide binding protein, putative [Ri	0.995	0.702	0.762	1e-101
356539408	326	PREDICTED: nucleoporin SEH1-like [Glycin	1.0	0.736	0.701	1e-95
356497301	326	PREDICTED: nucleoporin SEH1-like [Glycin	1.0	0.736	0.688	3e-89
297840027	326	hypothetical protein ARALYDRAFT_474917 [	1.0	0.736	0.679	9e-89
300392452	326	WD40 repeat nucleoporin similar to SEH1	1.0	0.736	0.701	7e-88
388495960	326	unknown [Lotus japonicus]	1.0	0.736	0.701	1e-87
12323471	594	unknown protein; 62092-56687 [Arabidopsi	1.0	0.404	0.666	3e-87

>gi|147790324|emb|CAN61200.1| hypothetical protein VITISV_003214 [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/240 (75%), Positives = 211/240 (87%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL 60
           M+K++ TLD GTT SSWNY G+RLATGS DGTL+IFDS DP+SSSFTC  +++VH  +I+
Sbjct: 1   MEKSLVTLDNGTTCSSWNYNGERLATGSVDGTLAIFDSIDPASSSFTCTSRSRVHEDSIV 60

Query: 61  KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
           KVVWVPPE+GDAV CIC+DG+L LWEE+VEDAQPLQWKLCKSF S S +VLDVQFGVS T
Sbjct: 61  KVVWVPPEYGDAVGCICADGTLSLWEEVVEDAQPLQWKLCKSFGSNSNKVLDVQFGVSPT 120

Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
           SLK+V+AYSDGHVKVYELLDPL LK+WQLQAEFQNA DSV+ F KA C+SAS+SWNPQ+G
Sbjct: 121 SLKMVSAYSDGHVKVYELLDPLELKSWQLQAEFQNASDSVSTFGKALCLSASVSWNPQRG 180

Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
           E+Q SSFVLGF+SDTPQLNS+KVWEFD+ H RWLPVAELAL  D+ D+V+ VAWA NIGR
Sbjct: 181 ESQQSSFVLGFHSDTPQLNSAKVWEFDQNHQRWLPVAELALHGDKGDQVFTVAWAPNIGR 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474079|ref|XP_002270960.2| PREDICTED: nucleoporin SEH1-like [Vitis vinifera] gi|297742315|emb|CBI34464.3| unnamed protein product [Vitis vinifera]

 Score =  383 bits (983), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 180/240 (75%), Positives = 211/240 (87%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL 60
           M+K++ TLD GTT SSWNY G+RLATGS DGTL+IFDS DP+SSSFTC  +++VH  +++
Sbjct: 1   MEKSLVTLDNGTTCSSWNYNGERLATGSVDGTLAIFDSIDPASSSFTCTSRSRVHEDSVV 60

Query: 61  KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
           KVVWVPPE+GDAV CIC+DG+L LWEE+VEDAQPLQWKLCKSF S S +VLDVQFGVS T
Sbjct: 61  KVVWVPPEYGDAVGCICADGTLSLWEEVVEDAQPLQWKLCKSFGSNSNKVLDVQFGVSPT 120

Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
           SLK+V+AYSDGHVKVYELLDPL LK+WQLQAEFQNA DSV+ F KA C+SAS+SWNPQ+G
Sbjct: 121 SLKMVSAYSDGHVKVYELLDPLELKSWQLQAEFQNASDSVSTFGKALCLSASVSWNPQRG 180

Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
           E+Q SSFVLGF+SDTPQLNS+KVWEFD+ H RWLPVAELAL  D+ D+V+ VAWA NIGR
Sbjct: 181 ESQQSSFVLGFHSDTPQLNSAKVWEFDQNHQRWLPVAELALHGDKGDQVFTVAWAPNIGR 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072178|ref|XP_002303639.1| predicted protein [Populus trichocarpa] gi|118483516|gb|ABK93656.1| unknown [Populus trichocarpa] gi|222841071|gb|EEE78618.1| predicted protein [Populus trichocarpa]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/240 (74%), Positives = 202/240 (84%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL 60
           M+K+VATLDKGTT +SWNYCGQRLATGS +G LSIFDSPDP+SSSFT     ++H G I+
Sbjct: 1   MEKSVATLDKGTTCTSWNYCGQRLATGSFNGFLSIFDSPDPASSSFTATSNIRIHEGGIV 60

Query: 61  KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
           K+VW+PPE+GDAVACIC DGSL LWEEI ED  PLQWKLCK F    ++VLD QFGV  T
Sbjct: 61  KIVWIPPEYGDAVACICGDGSLSLWEEIAEDGLPLQWKLCKIFHCKGSKVLDAQFGVIRT 120

Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
           SLK+V AYSDGHVKVYELL+P  LKNWQLQAE QN IDSV+ F KASC SASISWNPQ+ 
Sbjct: 121 SLKMVVAYSDGHVKVYELLNPFELKNWQLQAEIQNVIDSVSTFGKASCFSASISWNPQRN 180

Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
           E+Q  SFVLGFNSDTPQLNSSKVW FD+AH+RWLPVAELAL  D+SD+V+AVAWA N+GR
Sbjct: 181 ESQEPSFVLGFNSDTPQLNSSKVWVFDQAHHRWLPVAELALSLDKSDQVFAVAWAPNVGR 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537741|ref|XP_002509937.1| nucleotide binding protein, putative [Ricinus communis] gi|223549836|gb|EEF51324.1| nucleotide binding protein, putative [Ricinus communis]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 202/240 (84%), Gaps = 1/240 (0%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL 60
           M+KA+ATLD GTT SSWNYCGQRLATGS DG LSIFD  DP SSSFT   K +VH   I+
Sbjct: 18  MEKAIATLDTGTTCSSWNYCGQRLATGSIDGYLSIFDPRDPGSSSFTRTSKIRVHDAGIV 77

Query: 61  KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
           KVVWV PE GDAVACICSDGSL LWEE+VED+Q LQWKL +SF+S   +VLDVQFG S T
Sbjct: 78  KVVWVSPEHGDAVACICSDGSLSLWEEVVEDSQ-LQWKLSRSFQSKGNKVLDVQFGFSRT 136

Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
            LK+V AYSDG++KVYELLDPL LKNWQLQAEFQN IDSV+ F +A C SASISWNPQ+ 
Sbjct: 137 ILKMVVAYSDGNLKVYELLDPLELKNWQLQAEFQNVIDSVSTFGRAICFSASISWNPQRA 196

Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
           ENQ  SFVLGFNSDTPQLNSSKVWEFD+AH RWLPVAELALP D+SD+V+AVAWA NIGR
Sbjct: 197 ENQDLSFVLGFNSDTPQLNSSKVWEFDQAHQRWLPVAELALPADKSDQVFAVAWAPNIGR 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539408|ref|XP_003538190.1| PREDICTED: nucleoporin SEH1-like [Glycine max]

 Score =  354 bits (909), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 169/241 (70%), Positives = 204/241 (84%), Gaps = 1/241 (0%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-SSSSFTCNLKTKVHAGAI 59
           M K + TLD GTT +SWNY G RLA GS DGTLSIFDS +P SSSS     K++V  G I
Sbjct: 1   MAKELLTLDNGTTCTSWNYSGTRLAAGSADGTLSIFDSREPPSSSSLRSTFKSRVLEGNI 60

Query: 60  LKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS 119
           +K+VW+PPE+GDAVACI +DG + LWEE+ ED+Q LQWK+CKSF ++S++VLDVQFG+S 
Sbjct: 61  VKIVWIPPEYGDAVACISADGIVSLWEEVAEDSQSLQWKMCKSFGNSSSKVLDVQFGISL 120

Query: 120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179
            SLK+VAAYSDG+V+V+EL DPL L+NWQLQAEFQN I+SV+ F KASC+SASISWNPQK
Sbjct: 121 ASLKMVAAYSDGNVRVFELSDPLELRNWQLQAEFQNVIESVSSFGKASCLSASISWNPQK 180

Query: 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
           G +Q SSF++GFNS+TP+LNSSKVWEFD+AH RWLPVAELALPED+ D+VYAVAWA NIG
Sbjct: 181 GGSQESSFLVGFNSNTPELNSSKVWEFDQAHQRWLPVAELALPEDKGDQVYAVAWAPNIG 240

Query: 240 R 240
           R
Sbjct: 241 R 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497301|ref|XP_003517499.1| PREDICTED: nucleoporin SEH1-like [Glycine max]

 Score =  333 bits (854), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 166/241 (68%), Positives = 202/241 (83%), Gaps = 1/241 (0%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSS-FTCNLKTKVHAGAI 59
           M K + TLD GTT +SWNY G RLA GS DGTLSIFDS DP SSS      K++V  G I
Sbjct: 1   MAKELLTLDNGTTCTSWNYSGTRLAAGSVDGTLSIFDSRDPPSSSSLHSTFKSRVLEGNI 60

Query: 60  LKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS 119
           +K+VW+PPE+GDAVACI +DG + LWEE+ ED+Q LQWK+CKSF ++S++VLD QFG+S 
Sbjct: 61  VKIVWIPPEYGDAVACISADGIVSLWEEVAEDSQSLQWKMCKSFGNSSSKVLDAQFGISL 120

Query: 120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179
           TSLK+VAAYSDG+V+V+EL DPL L+NWQLQAEFQN I+SV+ F KASC+SASISWNPQK
Sbjct: 121 TSLKMVAAYSDGNVRVFELSDPLELRNWQLQAEFQNVIESVSSFGKASCLSASISWNPQK 180

Query: 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
           G +Q SSF++GFNS+T +LNSSKVWEFD+AH RWLPVAELALPE++ D++YAVAWA NIG
Sbjct: 181 GGSQESSFLVGFNSNTSELNSSKVWEFDQAHQRWLPVAELALPEEKGDQLYAVAWAPNIG 240

Query: 240 R 240
           R
Sbjct: 241 R 241

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840027|ref|XP_002887895.1| hypothetical protein ARALYDRAFT_474917 [Arabidopsis lyrata subsp. lyrata] gi|297333736|gb|EFH64154.1| hypothetical protein ARALYDRAFT_474917 [Arabidopsis lyrata subsp. lyrata]

 Score =  332 bits (851), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 163/240 (67%), Positives = 198/240 (82%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL 60
           M K++ATLD GTT SSWN+ G+RLATGS DG+ S++DS   SSS+FTC  K +V   +I+
Sbjct: 1   MAKSMATLDSGTTCSSWNHSGRRLATGSLDGSFSVYDSSTSSSSTFTCTSKVRVSESSIV 60

Query: 61  KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
           K+VW+P E+GDAVACIC DGSL  WEE+ ED+  L+WKLCKS ++ S+QVLDVQFGVS  
Sbjct: 61  KIVWLPSEYGDAVACICEDGSLSTWEELSEDSHALEWKLCKSIKNKSSQVLDVQFGVSRK 120

Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
           SLK+VAAYSDG+++V+ELL+PL LKNWQLQAEFQN IDS++M  K S +SAS+SWNP KG
Sbjct: 121 SLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSMLGKPSSLSASVSWNPMKG 180

Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
           E Q  SFVL FNSD+P LNSSK+WEFDEAHNRWL VAELALPED+ D VYA++WA NIGR
Sbjct: 181 EEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIGR 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300392452|dbj|BAJ10726.1| WD40 repeat nucleoporin similar to SEH1 [Lotus japonicus]

 Score =  329 bits (843), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 169/241 (70%), Positives = 196/241 (81%), Gaps = 1/241 (0%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHAGAI 59
           M K V TLD GTT SSWNY G RLA GS DGTLSIFDS DP SSS        KVH G I
Sbjct: 1   MAKEVLTLDNGTTCSSWNYSGTRLAAGSADGTLSIFDSRDPPSSSSLRLSFKSKVHEGNI 60

Query: 60  LKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS 119
           + +VWVPP +GDAVACI  DG + L EE+VED+QPLQWK+CK F S+S +VLDVQFG+S 
Sbjct: 61  VNIVWVPPAYGDAVACISVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISL 120

Query: 120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179
            SLK+VAAYSDGH+KV+ELLDPL LKNWQLQAEFQN I+SV+ F KA C+SASIS+NPQ 
Sbjct: 121 ASLKMVAAYSDGHMKVFELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNPQN 180

Query: 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
           G +Q SSF++GFNS+T +LNS+KVWEFD+AH RWLPVAELA+PED+ D+VYAVAWA NIG
Sbjct: 181 GGSQESSFLVGFNSNTSELNSAKVWEFDQAHQRWLPVAELAVPEDKGDQVYAVAWAPNIG 240

Query: 240 R 240
           R
Sbjct: 241 R 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495960|gb|AFK36046.1| unknown [Lotus japonicus]

 Score =  328 bits (840), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 169/241 (70%), Positives = 196/241 (81%), Gaps = 1/241 (0%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHAGAI 59
           M K V TLD GTT SSWNY G RLA GS DGTLSIFDS DP SSS        KVH G I
Sbjct: 1   MAKEVLTLDNGTTCSSWNYSGTRLAAGSADGTLSIFDSRDPPSSSSLRLSFKSKVHEGNI 60

Query: 60  LKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS 119
           +K+VWVPP +GDAVACI  DG + L EE+VED+QPLQWK+CK F S+S +VLDVQFG+S 
Sbjct: 61  VKIVWVPPAYGDAVACISVDGIVSLLEEVVEDSQPLQWKICKCFGSSSDKVLDVQFGISL 120

Query: 120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK 179
            SLK+VAAYSDGH+KV+ELLDPL LKNWQLQAEFQN I+SV+ F KA C+SASIS+NPQ 
Sbjct: 121 ASLKMVAAYSDGHMKVFELLDPLELKNWQLQAEFQNVIESVSSFGKAVCLSASISFNPQN 180

Query: 180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG 239
           G +Q SSF++GFNS+T +LNS+KVWEFD+AH RWLPVAELA+ ED+ D+VYAVAWA NIG
Sbjct: 181 GGSQESSFLVGFNSNTSELNSAKVWEFDQAHQRWLPVAELAVAEDKGDQVYAVAWAPNIG 240

Query: 240 R 240
           R
Sbjct: 241 R 241

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12323471|gb|AAG51710.1|AC066689_9 unknown protein; 62092-56687 [Arabidopsis thaliana]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 160/240 (66%), Positives = 195/240 (81%)

Query: 1   MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL 60
           M K++ATLD GTT SSWN  G RLA GS +G LSI++S   SSS+F+C  K +V   +I+
Sbjct: 1   MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSKVRVSESSIV 60

Query: 61  KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
           K+VW+P E+GDAVAC+C DGSL +WEE+ EDA  L+WKLCKS ++ S+QVLDVQFGVS  
Sbjct: 61  KIVWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVSRK 120

Query: 121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
           SLK+VAAYSDG+++V+ELL+PL LKNWQLQAEFQN IDS++   K S +SAS+SWNP KG
Sbjct: 121 SLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPMKG 180

Query: 181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
           E Q  SFVL FNSD+P LNSSK+WEFDEAHNRWL VAELALPED+ D VYA++WA NIGR
Sbjct: 181 EEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIGR 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2014210	326	SEH1H "AT1G64350" [Arabidopsis	1.0	0.736	0.645	3.4e-84
DICTYBASE|DDB_G0277257	467	DDB_G0277257 "Nucleoporin SEH1	0.625	0.321	0.283	5.6e-24
UNIPROTKB|Q4FZW5	360	seh1l-a "Nucleoporin seh1-A" [	0.870	0.580	0.298	1e-20
UNIPROTKB|Q5U4Y8	360	seh1l "Nucleoporin seh1" [Xeno	0.870	0.580	0.298	1e-20
UNIPROTKB|Q6GNF1	360	seh1l-b "Nucleoporin seh1-B" [	0.870	0.580	0.298	1e-20
UNIPROTKB|A7YY75	360	SEH1L "Nucleoporin SEH1" [Bos	0.870	0.580	0.298	2.1e-20
UNIPROTKB|Q96EE3	360	SEH1L "Nucleoporin SEH1" [Homo	0.870	0.580	0.294	3.8e-20
UNIPROTKB|Q5RAN6	360	SEH1L "Nucleoporin SEH1" [Pong	0.870	0.580	0.294	3.8e-20
UNIPROTKB|E1BYP7	419	SEH1L "Uncharacterized protein	0.870	0.498	0.294	4.5e-20
UNIPROTKB|C1BK83	364	seh1l "Nucleoporin seh1" [Osme	0.870	0.574	0.290	5.5e-20

TAIR|locus:2014210 SEH1H "AT1G64350" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 155/240 (64%), Positives = 187/240 (77%)

Query:     1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAIL 60
             M K++ATLD GTT SSWN  G RLA GS +G LSI           +C  K +V   +I+
Sbjct:     1 MAKSMATLDSGTTCSSWNQSGDRLAAGSLNGKLSIYESSTSSSSTFSCTSKVRVSESSIV 60

Query:    61 KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST 120
             K+VW+P E+GDAVAC+C DGSL +WEE+ EDA  L+WKLCKS ++ S+QVLDVQFGVS  
Sbjct:    61 KIVWLPSEYGDAVACVCEDGSLSIWEELSEDAHGLEWKLCKSMKNKSSQVLDVQFGVSRK 120

Query:   121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG 180
             SLK+VAAYSDG+++V+ELL+PL LKNWQLQAEFQN IDS++   K S +SAS+SWNP KG
Sbjct:   121 SLKMVAAYSDGYLRVFELLNPLELKNWQLQAEFQNVIDSLSTLGKPSSLSASVSWNPMKG 180

Query:   181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
             E Q  SFVL FNSD+P LNSSK+WEFDEAHNRWL VAELALPED+ D VYA++WA NIGR
Sbjct:   181 EEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELALPEDKGDPVYALSWAPNIGR 240

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

DICTYBASE|DDB_G0277257 DDB_G0277257 "Nucleoporin SEH1" [Dictyostelium discoideum (taxid:44689)]

 Score = 211 (79.3 bits), Expect = 5.6e-24, Sum P(3) = 5.6e-24
 Identities = 46/162 (28%), Positives = 83/162 (51%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+RLAT S+D  + +           +   + K H+G++ K+ W  PE+G  +A 
Sbjct:    19 SYDFYGKRLATCSSDQKIKVWDQNDNQKWELSA--EWKAHSGSVWKLAWAHPEYGQVIAS 76

Query:    76 ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV 135
                D ++ +WEE  ++    +W+L      +   V D++F   S  L+L    SDG++++
Sbjct:    77 CSFDRTVCIWEESEDEKGQKKWQLKAHLVDSRDSVTDIKFAPKSFGLRLATCSSDGYIRI 136

Query:   136 YELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 177
             YE +D + L  W +  EF++        +K +  S  ISWNP
Sbjct:   137 YEAMDIMNLSQWTIVEEFES--------QKGT--SNCISWNP 168

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q4FZW5 seh1l-a "Nucleoporin seh1-A" [Xenopus laevis (taxid:8355)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 69/231 (29%), Positives = 110/231 (47%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              +  +P +    +++E++E + R    AE  +    SD V+ +A+A N+GR
Sbjct:   186 SDDSSPNIMGKVQIYEYNE-NTRKYAKAETLMSV--SDPVHDIAFAPNLGR 233

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

UNIPROTKB|Q5U4Y8 seh1l "Nucleoporin seh1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 69/231 (29%), Positives = 110/231 (47%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              +  +P +    +++E++E + R    AE  +    SD V+ +A+A N+GR
Sbjct:   186 SDDSSPNIMGKVQIYEYNE-NTRKYAKAETLMSV--SDPVHDIAFAPNLGR 233

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

UNIPROTKB|Q6GNF1 seh1l-b "Nucleoporin seh1-B" [Xenopus laevis (taxid:8355)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 69/231 (29%), Positives = 110/231 (47%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              +  +P +    +++E++E + R    AE  +    SD V+ +A+A N+GR
Sbjct:   186 SDDSSPNIMGKVQIYEYNE-NTRKYAKAETLMSV--SDPVHDIAFAPNLGR 233

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

UNIPROTKB|A7YY75 SEH1L "Nucleoporin SEH1" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 69/231 (29%), Positives = 110/231 (47%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHAPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              +  +P   +  +++E++E + R    AE  L    +D V+ +A+A N+GR
Sbjct:   186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLLTV--TDPVHDIAFAPNLGR 233

GO:0000776 "kinetochore" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=ISS

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|Q96EE3 SEH1L "Nucleoporin SEH1" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 68/231 (29%), Positives = 110/231 (47%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              +  +P   +  +++E++E + R    AE  +    +D V+ +A+A N+GR
Sbjct:   186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLMTV--TDPVHDIAFAPNLGR 233

GO:0015031 "protein transport" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0006999 "nuclear pore organization" evidence=IMP

GO:0031080 "nuclear pore outer ring" evidence=NAS;IDA

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=IMP

GO:0007080 "mitotic metaphase plate congression" evidence=IMP

GO:0000776 "kinetochore" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005635 "nuclear envelope" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0008645 "hexose transport" evidence=TAS

GO:0010827 "regulation of glucose transport" evidence=TAS

GO:0015758 "glucose transport" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|Q5RAN6 SEH1L "Nucleoporin SEH1" [Pongo abelii (taxid:9601)]

 Score = 239 (89.2 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 68/231 (29%), Positives = 110/231 (47%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GIVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              +  +P   +  +++E++E + R    AE  +    +D V+ +A+A N+GR
Sbjct:   186 SDDSSPNAMAKVQIFEYNE-NTRKYAKAETLMTV--TDPVHDIAFAPNLGR 233

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

UNIPROTKB|E1BYP7 SEH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 242 (90.2 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 68/231 (29%), Positives = 112/231 (48%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIV-EDAQPLQ----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV E    L+    W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FNSDTPQLNSS-KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              + ++P + +  +++E++E + R    AE  +    +D V+ +A+A N+GR
Sbjct:   186 SDDNSPNILAKVQIYEYNE-NTRKYAKAEALMTV--TDPVHDIAFAPNLGR 233

GO:0000776 "kinetochore" evidence=IEA

GO:0006999 "nuclear pore organization" evidence=IEA

GO:0007080 "mitotic metaphase plate congression" evidence=IEA

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=IEA

UNIPROTKB|C1BK83 seh1l "Nucleoporin seh1" [Osmerus mordax (taxid:8014)]

 Score = 238 (88.8 bits), Expect = 5.5e-20, P = 5.5e-20
 Identities = 67/231 (29%), Positives = 108/231 (46%)

Query:    16 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
             S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A 
Sbjct:    19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLAS 76

Query:    76 ICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
                D +  +WEEIV ++   Q     W    +   + T V DV+F      L L    +D
Sbjct:    77 CSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSAD 136

Query:   131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG 190
             G V++YE  D + L  W LQ E            K SC  + ISWNP           +G
Sbjct:   137 GVVRIYEAPDVMNLSQWSLQHEISC---------KLSC--SCISWNPSSSRAHSPMIAVG 185

Query:   191 FN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR 240
              + S+T      +++E+ E   ++  V  L      +D V+ +A+A N+GR
Sbjct:   186 SDDSNTAYSGKVQIYEYVENTRKYAKVETLMTV---TDPVHDIAFAPNLGR 233

GO:0006999 "nuclear pore organization" evidence=ISS

GO:0007080 "mitotic metaphase plate congression" evidence=ISS

GO:0031080 "nuclear pore outer ring" evidence=ISS

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=ISS

GO:0000776 "kinetochore" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002449001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (325 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-06
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-05
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 49/225 (21%)

Query: 10  KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF 69
            G T  +++  G+ LATGS DGT+ ++D       +       K H G +  V       
Sbjct: 10  GGVTCVAFSPDGKLLATGSGDGTIKVWD-----LETGELLRTLKGHTGPVRDVAASA--D 62

Query: 70  GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129
           G  +A   SD ++ LW+           +  ++    ++ V  V F  S     L ++  
Sbjct: 63  GTYLASGSSDKTIRLWDLE-------TGECVRTLTGHTSYVSSVAF--SPDGRILSSSSR 113

Query: 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL 189
           D  +KV+++         +     +   D V           S++++P         FV 
Sbjct: 114 DKTIKVWDVETG------KCLTTLRGHTDWVN----------SVAFSPDGT------FVA 151

Query: 190 GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW 234
             + D     + K+W+          VA L      + EV +VA+
Sbjct: 152 SSSQD----GTIKLWDLRTGK----CVATL---TGHTGEVNSVAF 185

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 14/138 (10%)

Query: 9   DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE 68
                S +++  G+ LA+GS+DGT+ ++D     +     +L  K H G +  + +  P+
Sbjct: 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDL---ETGKLLSSLTLKGHEGPVSSLSF-SPD 339

Query: 69  FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY 128
               V+    DG++ LW         L+           + VL V F  S     + +  
Sbjct: 340 GSLLVSGGSDDGTIRLW--------DLRTGKPLKTLEGHSNVLSVSF--SPDGRVVSSGS 389

Query: 129 SDGHVKVYELLDPLILKN 146
           +DG V++++L    +L+N
Sbjct: 390 TDGTVRLWDLSTGSLLRN 407

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 24  LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL 83
           L++ S D T+ ++D       +  C    + H   +  V + P   G  VA    DG++ 
Sbjct: 108 LSSSSRDKTIKVWDVE-----TGKCLTTLRGHTDWVNSVAFSP--DGTFVASSSQDGTIK 160

Query: 84  LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYEL 138
           LW     D +    K   +    + +V  V F  S    KL+++ SDG +K+++L
Sbjct: 161 LW-----DLR--TGKCVATLTGHTGEVNSVAF--SPDGEKLLSSSSDGTIKLWDL 206

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 41/198 (20%), Positives = 80/198 (40%), Gaps = 16/198 (8%)

Query: 10  KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF 69
             +  SS++  G  LA+GS+DGT+ ++D    SS   T       H+ ++L V + P   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT----LSGHSSSVLSVAFSP--D 295

Query: 70  GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129
           G  +A   SDG++ LW     D +  +     + +     V  + F    + L +     
Sbjct: 296 GKLLASGSSDGTVRLW-----DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSD 349

Query: 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL 189
           DG +++++L     LK      E  + + SV+       +S+  +    +  +  +  +L
Sbjct: 350 DGTIRLWDLRTGKPLKTL----EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405

Query: 190 GFNSDTPQLNSSKVWEFD 207
                     +S  +  D
Sbjct: 406 RNLDGHTSRVTSLDFSPD 423

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	99.98
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.94
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.94
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.94
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.94
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.94
KOG0267	825	consensus Microtubule severing protein katanin p80	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.93
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.93
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.93
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG0296	399	consensus Angio-associated migratory cell protein	99.93
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.93
PLN00181	793	protein SPA1-RELATED; Provisional	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.92
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.91
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
PTZ00420	568	coronin; Provisional	99.91
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.91
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.91
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.9
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.9
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.9
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.9
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.9
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.9
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.9
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG2096	420	consensus WD40 repeat protein [General function pr	99.89
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.89
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.89
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.89
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.89
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.88
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.88
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.88
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.88
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.86
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.86
KOG0641	350	consensus WD40 repeat protein [General function pr	99.86
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.86
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.86
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.85
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.85
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.85
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.84
KOG1274	933	consensus WD40 repeat protein [General function pr	99.84
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.84
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.83
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.83
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.82
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.81
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.81
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.81
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.81
KOG2048	691	consensus WD40 repeat protein [General function pr	99.81
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.8
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.8
KOG2055	514	consensus WD40 repeat protein [General function pr	99.8
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.79
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.78
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.78
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.78
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.78
KOG1539	910	consensus WD repeat protein [General function pred	99.78
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.77
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.77
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.76
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.76
KOG2048	691	consensus WD40 repeat protein [General function pr	99.76
KOG1273	405	consensus WD40 repeat protein [General function pr	99.76
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.76
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.76
KOG1539	910	consensus WD repeat protein [General function pred	99.76
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.74
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.72
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.72
KOG4328	498	consensus WD40 protein [Function unknown]	99.71
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.71
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.7
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.7
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.7
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.69
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.69
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.69
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.68
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.68
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.67
KOG2096	420	consensus WD40 repeat protein [General function pr	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
COG2319	466	FOG: WD40 repeat [General function prediction only	99.64
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.64
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.63
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.63
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.62
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.61
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.61
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.59
KOG0649	325	consensus WD40 repeat protein [General function pr	99.58
COG2319	466	FOG: WD40 repeat [General function prediction only	99.57
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.57
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.57
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.57
KOG1188	376	consensus WD40 repeat protein [General function pr	99.56
KOG0649	325	consensus WD40 repeat protein [General function pr	99.56
PRK11028	330	6-phosphogluconolactonase; Provisional	99.55
PRK01742	429	tolB translocation protein TolB; Provisional	99.55
KOG2139	445	consensus WD40 repeat protein [General function pr	99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.53
KOG1334	559	consensus WD40 repeat protein [General function pr	99.51
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.51
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG4227	609	consensus WD40 repeat protein [General function pr	99.49
KOG1310	758	consensus WD40 repeat protein [General function pr	99.48
KOG1963	792	consensus WD40 repeat protein [General function pr	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
KOG1963	792	consensus WD40 repeat protein [General function pr	99.45
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.44
KOG2321	703	consensus WD40 repeat protein [General function pr	99.43
KOG2139	445	consensus WD40 repeat protein [General function pr	99.42
PRK04922	433	tolB translocation protein TolB; Provisional	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.41
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.39
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.38
PRK03629	429	tolB translocation protein TolB; Provisional	99.38
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.37
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.36
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.35
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.34
KOG4547	541	consensus WD40 repeat-containing protein [General	99.34
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.33
PRK03629	429	tolB translocation protein TolB; Provisional	99.33
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.31
PRK02889	427	tolB translocation protein TolB; Provisional	99.29
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.28
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.28
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.25
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.24
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.24
KOG4547	541	consensus WD40 repeat-containing protein [General	99.23
PRK04922	433	tolB translocation protein TolB; Provisional	99.23
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.22
PRK00178	430	tolB translocation protein TolB; Provisional	99.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.22
PRK01029	428	tolB translocation protein TolB; Provisional	99.2
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.2
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.16
PRK04792	448	tolB translocation protein TolB; Provisional	99.15
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.14
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.14
PRK05137	435	tolB translocation protein TolB; Provisional	99.1
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.1
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.09
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.08
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.08
PRK01029	428	tolB translocation protein TolB; Provisional	99.07
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.07
KOG2695	425	consensus WD40 repeat protein [General function pr	99.05
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.04
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.02
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.01
KOG2315	566	consensus Predicted translation initiation factor	98.98
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.98
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.95
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.93
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.91
PRK00178	430	tolB translocation protein TolB; Provisional	98.91
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.89
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.88
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.87
KOG2695	425	consensus WD40 repeat protein [General function pr	98.84
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.83
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.83
PRK04792	448	tolB translocation protein TolB; Provisional	98.83
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.83
KOG2314	698	consensus Translation initiation factor 3, subunit	98.82
KOG2315	566	consensus Predicted translation initiation factor	98.79
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.79
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.78
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.78
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.75
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.75
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.72
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.72
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.7
COG4946	668	Uncharacterized protein related to the periplasmic	98.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.66
PRK04043	419	tolB translocation protein TolB; Provisional	98.65
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.61
KOG1334	559	consensus WD40 repeat protein [General function pr	98.6
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.55
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.55
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.54
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.48
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
COG4946	668	Uncharacterized protein related to the periplasmic	98.43
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.43
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.39
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.37
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.37
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.35
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.34
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.33
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.3
PRK04043	419	tolB translocation protein TolB; Provisional	98.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.24
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.2
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.17
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.16
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.15
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.15
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.13
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.1
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.1
KOG2314	698	consensus Translation initiation factor 3, subunit	98.07
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.02
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.99
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.99
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.99
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.98
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.95
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.94
KOG3621	726	consensus WD40 repeat-containing protein [General	97.89
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.87
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.86
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.85
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.85
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.73
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.68
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.64
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.63
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.61
KOG3621	726	consensus WD40 repeat-containing protein [General	97.58
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.57
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.55
PRK02888	635	nitrous-oxide reductase; Validated	97.54
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.54
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	97.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.36
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.34
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.34
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.32
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.21
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.16
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.11
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.09
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.99
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.97
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.96
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.86
PHA02713	557	hypothetical protein; Provisional	96.79
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.74
KOG2444	238	consensus WD40 repeat protein [General function pr	96.73
PRK02888	635	nitrous-oxide reductase; Validated	96.7
KOG2395	644	consensus Protein involved in vacuole import and d	96.68
PHA03098	534	kelch-like protein; Provisional	96.56
PHA02713	557	hypothetical protein; Provisional	96.53
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.5
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.49
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	96.44
PRK13616	591	lipoprotein LpqB; Provisional	96.42
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.31
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.21
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.19
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.93
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.91
PHA02790	480	Kelch-like protein; Provisional	95.91
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.81
PRK13616	591	lipoprotein LpqB; Provisional	95.81
COG3391	381	Uncharacterized conserved protein [Function unknow	95.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.63
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.59
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.49
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.45
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.4
PRK13684	334	Ycf48-like protein; Provisional	95.28
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.21
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.18
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.15
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.12
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.09
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.02
KOG2377	657	consensus Uncharacterized conserved protein [Funct	94.93
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.92
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.74
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	94.7
COG3391	381	Uncharacterized conserved protein [Function unknow	94.68
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.64
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.62
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.36
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	94.33
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.3
KOG2395	644	consensus Protein involved in vacuole import and d	94.3
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.17
KOG2444	238	consensus WD40 repeat protein [General function pr	93.98
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	93.73
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.64
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	93.52
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	93.46
PHA03098	534	kelch-like protein; Provisional	93.37
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.21
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.19
COG4590	733	ABC-type uncharacterized transport system, permeas	93.06
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	92.63
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	92.54
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	92.5
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.48
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.23
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.81
PHA02790	480	Kelch-like protein; Provisional	91.65
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.37
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.25
PLN02153	341	epithiospecifier protein	91.22
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.37
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.12
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	89.19
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	89.03
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.77
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	88.34
COG4590	733	ABC-type uncharacterized transport system, permeas	88.2
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.97
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	87.75
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.72
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.22
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	87.02
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	86.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.82
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.73
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	86.57
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.49
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.46
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	85.9
PLN00033	398	photosystem II stability/assembly factor; Provisio	85.81
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	85.64
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	85.29
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	85.14
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.52
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.16
PLN02193	470	nitrile-specifier protein	83.5
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	83.14
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.08
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	83.02
PF14727	418	PHTB1_N: PTHB1 N-terminus	82.34
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	82.33
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	82.27
PF08954	136	DUF1900: Domain of unknown function (DUF1900); Int	81.34
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	81.09
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	81.01
KOG2247	615	consensus WD40 repeat-containing protein [General	80.32
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	80.01

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-35  Score=211.91  Aligned_cols=225  Identities=36%  Similarity=0.665  Sum_probs=195.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|.+-|+++.|++.|+++|+|+.|++|+|||... ..+++.+....+.|.+.|..+.|.++.+|+.+++++.|+++.||.
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~-~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTS-DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccC-CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            5888899999999999999999999999999743 344899999999999999999999999999999999999999999


Q ss_pred             eeec--cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           87 EIVE--DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        87 ~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ....  +..+.+|....++...+..|+.|+|.|..-|..+++++.||.++||+...+.++..|.++.+++....   +.+
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~---pp~  166 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID---PPG  166 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC---Ccc
Confidence            8533  33457899999999999999999999988899999999999999999999999999999998874433   222


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                      +......||+|+|..-  ..++||+|+.+|....+.++||......++|....+|.   +|+++|++|+|.|+.||
T Consensus       167 ~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~---d~~dpI~di~wAPn~Gr  237 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP---DHTDPIRDISWAPNIGR  237 (361)
T ss_pred             cccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCcceeeeehhcC---CCCCcceeeeeccccCC
Confidence            2222334999997664  36699999988777778999999999888998888887   78889999999999987

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-35  Score=218.91  Aligned_cols=187  Identities=22%  Similarity=0.346  Sum_probs=165.6

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.++|.|++|+|+|++||+|+.|.++|+||+.     +..+..+.++|..-|.+++|+|+  |..|++|+.||+|+
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~-----TeTp~~t~KgH~~WVlcvawsPD--gk~iASG~~dg~I~  182 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLD-----TETPLFTCKGHKNWVLCVAWSPD--GKKIASGSKDGSIR  182 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccC-----CCCcceeecCCccEEEEEEECCC--cchhhccccCCeEE
Confidence            478899999999999999999999999999999999     77889999999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeec---CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS---STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +||...+.      +.-..+.+|...|++++|.|-   +.+++|++++.||.|+|||+..      ..++..+.+|..+|
T Consensus       183 lwdpktg~------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~------~~~~~~lsgHT~~V  250 (480)
T KOG0271|consen  183 LWDPKTGQ------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL------GTCVRTLSGHTASV  250 (480)
T ss_pred             EecCCCCC------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC------ceEEEEeccCccce
Confidence            99987763      567788999999999999872   4567899999999999999987      78888999999988


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      .          |+.|--.+      +|++|+.|     ++|++|+...+..    ..++.   ||..+|+.++.|.|
T Consensus       251 T----------CvrwGG~g------liySgS~D-----rtIkvw~a~dG~~----~r~lk---GHahwvN~lalsTd  299 (480)
T KOG0271|consen  251 T----------CVRWGGEG------LIYSGSQD-----RTIKVWRALDGKL----CRELK---GHAHWVNHLALSTD  299 (480)
T ss_pred             E----------EEEEcCCc------eEEecCCC-----ceEEEEEccchhH----HHhhc---ccchheeeeeccch
Confidence            8          99997666      89999999     9999999877542    22333   78889999998854

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=223.22  Aligned_cols=188  Identities=19%  Similarity=0.285  Sum_probs=169.1

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .|.+|...|..++|+|+|++|+|++.|.+-++||+.     +...+....+|...|.+++|.++  |.++++|+.|..-+
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~-----tk~ElL~QEGHs~~v~~iaf~~D--GSL~~tGGlD~~~R  328 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE-----TKSELLLQEGHSKGVFSIAFQPD--GSLAATGGLDSLGR  328 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeecccccchhhcccc-----cchhhHhhcccccccceeEecCC--CceeeccCccchhh
Confidence            477899999999999999999999999999999999     66777788899999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      |||++++       .++..+.+|...|.+|+|+|  +|..|++|+.|++++|||++.      ......+..|..-|+  
T Consensus       329 vWDlRtg-------r~im~L~gH~k~I~~V~fsP--NGy~lATgs~Dnt~kVWDLR~------r~~ly~ipAH~nlVS--  391 (459)
T KOG0272|consen  329 VWDLRTG-------RCIMFLAGHIKEILSVAFSP--NGYHLATGSSDNTCKVWDLRM------RSELYTIPAHSNLVS--  391 (459)
T ss_pred             eeecccC-------cEEEEecccccceeeEeECC--CceEEeecCCCCcEEEeeecc------cccceecccccchhh--
Confidence            9999998       99999999999999999999  999999999999999999997      455667778887777  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              .|+|+|..    +.+|++++.|     ++++||...+    |.+...+.   ||.+.|.+++.+||+.
T Consensus       392 --------~Vk~~p~~----g~fL~TasyD-----~t~kiWs~~~----~~~~ksLa---GHe~kV~s~Dis~d~~  443 (459)
T KOG0272|consen  392 --------QVKYSPQE----GYFLVTASYD-----NTVKIWSTRT----WSPLKSLA---GHEGKVISLDISPDSQ  443 (459)
T ss_pred             --------heEecccC----CeEEEEcccC-----cceeeecCCC----cccchhhc---CCccceEEEEeccCCc
Confidence                    99999954    3499999999     9999999876    45555555   6777999999999973

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.4e-33  Score=199.59  Aligned_cols=200  Identities=20%  Similarity=0.362  Sum_probs=177.3

Q ss_pred             chhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +++++|.+++..++|+|- |..||+|+.|+.|+||+.....  ++.+...+. +|+..|.+++|+|.  |++|++++.|.
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--s~~ck~vld~~hkrsVRsvAwsp~--g~~La~aSFD~   83 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--SWTCKTVLDDGHKRSVRSVAWSPH--GRYLASASFDA   83 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--cEEEEEeccccchheeeeeeecCC--CcEEEEeeccc
Confidence            568899999999999997 8999999999999999997422  577776664 79999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      ++.||.-..     .+|+++.++.+|+..|.+++|++  +|.+||++++|..|-||.....   ..+++...++.|...|
T Consensus        84 t~~Iw~k~~-----~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~ded---dEfec~aVL~~HtqDV  153 (312)
T KOG0645|consen   84 TVVIWKKED-----GEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDED---DEFECIAVLQEHTQDV  153 (312)
T ss_pred             eEEEeecCC-----CceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCC---CcEEEEeeeccccccc
Confidence            999998764     56799999999999999999999  9999999999999999998743   3488999999999888


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                      .          .+.|+|...     +|++++.|     ++|++|+... ...|.....+.   +|+..|++++|+|+|.|
T Consensus       154 K----------~V~WHPt~d-----lL~S~SYD-----nTIk~~~~~~-dddW~c~~tl~---g~~~TVW~~~F~~~G~r  209 (312)
T KOG0645|consen  154 K----------HVIWHPTED-----LLFSCSYD-----NTIKVYRDED-DDDWECVQTLD---GHENTVWSLAFDNIGSR  209 (312)
T ss_pred             c----------EEEEcCCcc-----eeEEeccC-----CeEEEEeecC-CCCeeEEEEec---CccceEEEEEecCCCce
Confidence            8          899999987     99999999     9999999875 55688888777   57679999999998854

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.5e-35  Score=234.17  Aligned_cols=188  Identities=16%  Similarity=0.240  Sum_probs=173.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +++.+|.++|..++|+|+.++|++|++|++||+|.+.     ++.++-.+++|..+|+++.|+|.  |.+|++++.|++.
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~-----t~s~~V~y~GH~~PVwdV~F~P~--GyYFatas~D~tA  517 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD-----TWSCLVIYKGHLAPVWDVQFAPR--GYYFATASHDQTA  517 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecc-----cceeEEEecCCCcceeeEEecCC--ceEEEecCCCcee
Confidence            4478999999999999999999999999999999999     88999999999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++|.....       .+++.+.+|-..|.|+.|+|  +..|+++|+.|.+|++||..+      +..+..|.+|..+|. 
T Consensus       518 rLWs~d~~-------~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~------G~~VRiF~GH~~~V~-  581 (707)
T KOG0263|consen  518 RLWSTDHN-------KPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVST------GNSVRIFTGHKGPVT-  581 (707)
T ss_pred             eeeecccC-------CchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCC------CcEEEEecCCCCceE-
Confidence            99999776       89999999999999999999  999999999999999999998      677888999999988 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               +++|+|.+.     +|++|+.|     +.|.|||+.++.....+    .   +|++.|++|.||.|++
T Consensus       582 ---------al~~Sp~Gr-----~LaSg~ed-----~~I~iWDl~~~~~v~~l----~---~Ht~ti~SlsFS~dg~  632 (707)
T KOG0263|consen  582 ---------ALAFSPCGR-----YLASGDED-----GLIKIWDLANGSLVKQL----K---GHTGTIYSLSFSRDGN  632 (707)
T ss_pred             ---------EEEEcCCCc-----eEeecccC-----CcEEEEEcCCCcchhhh----h---cccCceeEEEEecCCC
Confidence                     999999988     99999999     99999999886533222    2   5788999999999985

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-33  Score=202.83  Aligned_cols=187  Identities=19%  Similarity=0.253  Sum_probs=165.2

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ++.+.+|...|..+..+++|++.++++.|+++++||+.     +++..+.|.+|...|.+++|+++  ..++++|+.|.+
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~-----~g~~t~~f~GH~~dVlsva~s~d--n~qivSGSrDkT  128 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLA-----TGESTRRFVGHTKDVLSVAFSTD--NRQIVSGSRDKT  128 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEec-----CCcEEEEEEecCCceEEEEecCC--CceeecCCCcce
Confidence            35678899999999999999999999999999999999     66788899999999999999999  999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      |++|+...        .+..++...  +..|.++.|+|+.+..++++++.|++|++||+++      .++.+.+.+|...
T Consensus       129 iklwnt~g--------~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~------~~l~~~~~gh~~~  194 (315)
T KOG0279|consen  129 IKLWNTLG--------VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN------CQLRTTFIGHSGY  194 (315)
T ss_pred             eeeeeecc--------cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC------cchhhcccccccc
Confidence            99999976        455555543  7899999999966688999999999999999998      6777777788777


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      +.          .+.++|++.     +.++|+.|     |.+.+||+..++..+.+        +|...|.+++|+|+
T Consensus       195 v~----------t~~vSpDGs-----lcasGgkd-----g~~~LwdL~~~k~lysl--------~a~~~v~sl~fspn  244 (315)
T KOG0279|consen  195 VN----------TVTVSPDGS-----LCASGGKD-----GEAMLWDLNEGKNLYSL--------EAFDIVNSLCFSPN  244 (315)
T ss_pred             EE----------EEEECCCCC-----EEecCCCC-----ceEEEEEccCCceeEec--------cCCCeEeeEEecCC
Confidence            76          999999998     88999998     99999999987764333        47779999999997

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.4e-34  Score=202.01  Aligned_cols=209  Identities=28%  Similarity=0.462  Sum_probs=174.4

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ++-...|++.|..+..+..|++||||+.|++|+||...+++  ..+++.++.+|.++|..+.|.++++|.+|++++.||.
T Consensus         4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk   81 (299)
T KOG1332|consen    4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK   81 (299)
T ss_pred             eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--CceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence            34455799999999999999999999999999999998764  2378899999999999999999888999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |.||...+     ..|.....+..|...|++++|.|++.|..|++++.||.|.|.+.+..   ..+........|...+ 
T Consensus        82 VIiWke~~-----g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~---g~w~t~ki~~aH~~Gv-  152 (299)
T KOG1332|consen   82 VIIWKEEN-----GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS---GGWTTSKIVFAHEIGV-  152 (299)
T ss_pred             EEEEecCC-----CchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC---CCccchhhhhcccccc-
Confidence            99999876     47888889999999999999999999999999999999999999864   1233333334554433 


Q ss_pred             ccccccceeeeEEEeCCCCC---------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295          162 MFRKASCISASISWNPQKGE---------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~---------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v  232 (240)
                               ++++|.|...+         .....|++|++|     +.|+||++.++  .|.+...|+   +|++.|+++
T Consensus       153 ---------nsVswapa~~~g~~~~~~~~~~~krlvSgGcD-----n~VkiW~~~~~--~w~~e~~l~---~H~dwVRDV  213 (299)
T KOG1332|consen  153 ---------NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD-----NLVKIWKFDSD--SWKLERTLE---GHKDWVRDV  213 (299)
T ss_pred             ---------ceeeecCcCCCccccccCcccccceeeccCCc-----cceeeeecCCc--chhhhhhhh---hcchhhhhh
Confidence                     49999998432         123479999999     99999999887  576665555   688899999


Q ss_pred             EEecCCCC
Q 026295          233 AWALNIGR  240 (240)
Q Consensus       233 ~~sp~~~~  240 (240)
                      +|.|..|+
T Consensus       214 AwaP~~gl  221 (299)
T KOG1332|consen  214 AWAPSVGL  221 (299)
T ss_pred             hhccccCC
Confidence            99998763

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.1e-34  Score=216.75  Aligned_cols=188  Identities=18%  Similarity=0.243  Sum_probs=170.2

Q ss_pred             chhcccccceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+|.+|.+.|.++.|+|.  +.-||||+.||++++|++.     .-.++..+.+|...|..++|+|+  |++|++++.|.
T Consensus       211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-----~e~~l~~l~gH~~RVs~VafHPs--G~~L~TasfD~  283 (459)
T KOG0272|consen  211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-----QETPLQDLEGHLARVSRVAFHPS--GKFLGTASFDS  283 (459)
T ss_pred             EEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-----CCcchhhhhcchhhheeeeecCC--Cceeeeccccc
Confidence            468899999999999996  6799999999999999998     44788999999999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +-++||+.++       ..+....+|...|.+++|.|  +|..+++|+.|..-+|||+++      +.++..+.+|...|
T Consensus       284 tWRlWD~~tk-------~ElL~QEGHs~~v~~iaf~~--DGSL~~tGGlD~~~RvWDlRt------gr~im~L~gH~k~I  348 (459)
T KOG0272|consen  284 TWRLWDLETK-------SELLLQEGHSKGVFSIAFQP--DGSLAATGGLDSLGRVWDLRT------GRCIMFLAGHIKEI  348 (459)
T ss_pred             chhhcccccc-------hhhHhhcccccccceeEecC--CCceeeccCccchhheeeccc------CcEEEEecccccce
Confidence            9999999987       66777789999999999999  999999999999999999999      78888999999988


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          +|.|+|++-     .||||+.|     ++++|||++.....    ..++   +|++-|+.|.|+|..|
T Consensus       349 ~----------~V~fsPNGy-----~lATgs~D-----nt~kVWDLR~r~~l----y~ip---AH~nlVS~Vk~~p~~g  400 (459)
T KOG0272|consen  349 L----------SVAFSPNGY-----HLATGSSD-----NTCKVWDLRMRSEL----YTIP---AHSNLVSQVKYSPQEG  400 (459)
T ss_pred             e----------eEeECCCce-----EEeecCCC-----CcEEEeeecccccc----eecc---cccchhhheEecccCC
Confidence            8          999999997     89999999     99999999986543    2223   6999999999999766

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-33  Score=207.59  Aligned_cols=195  Identities=23%  Similarity=0.384  Sum_probs=162.0

Q ss_pred             chhcccccceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295            3 KAVATLDKGTTSSSWNY-----CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      +.|.+|...|++++|.|     ..++||+++.||.|+|||+.     .++++..+.+|+.+|+|++|--   ..++++++
T Consensus       194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-----~~~~~~~lsgHT~~VTCvrwGG---~gliySgS  265 (480)
T KOG0271|consen  194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-----LGTCVRTLSGHTASVTCVRWGG---EGLIYSGS  265 (480)
T ss_pred             ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-----CceEEEEeccCccceEEEEEcC---CceEEecC
Confidence            56889999999999987     56799999999999999998     6689999999999999999943   36899999


Q ss_pred             cCCeEEEEEeeeccC-----------------------------CC----------------------------------
Q 026295           78 SDGSLLLWEEIVEDA-----------------------------QP----------------------------------   94 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~-----------------------------~~----------------------------------   94 (240)
                      .|++|++|+...+.-                             .+                                  
T Consensus       266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd  345 (480)
T KOG0271|consen  266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD  345 (480)
T ss_pred             CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence            999999998443100                             00                                  


Q ss_pred             ---cccE------EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           95 ---LQWK------LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        95 ---~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                         --|+      ++..+.+|..-|..+.|+|  +++++|+++.|..|++|+-++      ++.+..|.+|..+|.    
T Consensus       346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP--d~r~IASaSFDkSVkLW~g~t------Gk~lasfRGHv~~VY----  413 (480)
T KOG0271|consen  346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSP--DGRYIASASFDKSVKLWDGRT------GKFLASFRGHVAAVY----  413 (480)
T ss_pred             ceEEEecccccccchhhhhchhhheeeEEECC--CccEEEEeecccceeeeeCCC------cchhhhhhhccceeE----
Confidence               0011      1223446888999999999  999999999999999999998      788888888888777    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                            -++|+.+..     +|++|+.|     .++++|++++.+    +...|+   ||.+.|+++.|+|||+|
T Consensus       414 ------qvawsaDsR-----LlVS~SkD-----sTLKvw~V~tkK----l~~DLp---Gh~DEVf~vDwspDG~r  465 (480)
T KOG0271|consen  414 ------QVAWSADSR-----LLVSGSKD-----STLKVWDVRTKK----LKQDLP---GHADEVFAVDWSPDGQR  465 (480)
T ss_pred             ------EEEeccCcc-----EEEEcCCC-----ceEEEEEeeeee----ecccCC---CCCceEEEEEecCCCce
Confidence                  899999987     88899988     999999999854    344445   68889999999999986

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-31  Score=188.20  Aligned_cols=193  Identities=17%  Similarity=0.222  Sum_probs=167.3

Q ss_pred             hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+++|.+.|+.++..+. ...+.+++.|.++.+|++.......+.+.+.+.+|+..|..+..+++  |++.++++.|+++
T Consensus        10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~d--g~~alS~swD~~l   87 (315)
T KOG0279|consen   10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSD--GNFALSASWDGTL   87 (315)
T ss_pred             eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccC--CceEEeccccceE
Confidence            47889999999999987 47899999999999999976654466788999999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc--ccee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA--IDSV  160 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~--~~~v  160 (240)
                      ++||+..+       +..+.|.+|...|.+++|+|  +...+++|+.|.+|++|+...       .+..++...  ...|
T Consensus        88 rlWDl~~g-------~~t~~f~GH~~dVlsva~s~--dn~qivSGSrDkTiklwnt~g-------~ck~t~~~~~~~~WV  151 (315)
T KOG0279|consen   88 RLWDLATG-------ESTRRFVGHTKDVLSVAFST--DNRQIVSGSRDKTIKLWNTLG-------VCKYTIHEDSHREWV  151 (315)
T ss_pred             EEEEecCC-------cEEEEEEecCCceEEEEecC--CCceeecCCCcceeeeeeecc-------cEEEEEecCCCcCcE
Confidence            99999887       89999999999999999999  999999999999999999974       555555433  5666


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          ++.|+|+..   .++|+.++.|     ++|++||+++-+..       ..+.+|++.|+.+++||||.
T Consensus       152 s----------cvrfsP~~~---~p~Ivs~s~D-----ktvKvWnl~~~~l~-------~~~~gh~~~v~t~~vSpDGs  205 (315)
T KOG0279|consen  152 S----------CVRFSPNES---NPIIVSASWD-----KTVKVWNLRNCQLR-------TTFIGHSGYVNTVTVSPDGS  205 (315)
T ss_pred             E----------EEEEcCCCC---CcEEEEccCC-----ceEEEEccCCcchh-------hccccccccEEEEEECCCCC
Confidence            6          999999964   4499999999     99999999875422       23447888999999999984

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.98  E-value=4.7e-30  Score=183.55  Aligned_cols=184  Identities=21%  Similarity=0.373  Sum_probs=163.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|...|++++|+|.|++||+|+.|.++.||.-...   .++++.++.+|+..|.+++|+++  |.+||+++.|.+|.||.
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~---efecv~~lEGHEnEVK~Vaws~s--G~~LATCSRDKSVWiWe  133 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG---EFECVATLEGHENEVKCVAWSAS--GNYLATCSRDKSVWIWE  133 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCC---ceeEEeeeeccccceeEEEEcCC--CCEEEEeeCCCeEEEEE
Confidence            58899999999999999999999999999987644   88999999999999999999999  99999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      +...    .++.+...++.|...|..+.|+|  ...+|++++.|++|++|.-..   ...|++.+++..|...+-     
T Consensus       134 ~ded----dEfec~aVL~~HtqDVK~V~WHP--t~dlL~S~SYDnTIk~~~~~~---dddW~c~~tl~g~~~TVW-----  199 (312)
T KOG0645|consen  134 IDED----DEFECIAVLQEHTQDVKHVIWHP--TEDLLFSCSYDNTIKVYRDED---DDDWECVQTLDGHENTVW-----  199 (312)
T ss_pred             ecCC----CcEEEEeeeccccccccEEEEcC--CcceeEEeccCCeEEEEeecC---CCCeeEEEEecCccceEE-----
Confidence            9855    56789999999999999999999  778899999999999998763   234999999999987777     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                           +++|+|.+.     .|++++.|     ++|+||.+...-           ..-|+.+++.++|.
T Consensus       200 -----~~~F~~~G~-----rl~s~sdD-----~tv~Iw~~~~~~-----------~~~~sr~~Y~v~W~  242 (312)
T KOG0645|consen  200 -----SLAFDNIGS-----RLVSCSDD-----GTVSIWRLYTDL-----------SGMHSRALYDVPWD  242 (312)
T ss_pred             -----EEEecCCCc-----eEEEecCC-----cceEeeeeccCc-----------chhcccceEeeeec
Confidence                 999999997     79999998     999999976321           11266689999998

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=1.5e-30  Score=198.58  Aligned_cols=192  Identities=23%  Similarity=0.391  Sum_probs=159.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..|++++|+.+|.+||+|+.||.++||+...      .++.++..|.++|.+++|+..  |.+|++++.|+++.+||...
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G------~l~~tl~~HkgPI~slKWnk~--G~yilS~~vD~ttilwd~~~  307 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDG------NLISTLGQHKGPIFSLKWNKK--GTYILSGGVDGTTILWDAHT  307 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCc------hhhhhhhccCCceEEEEEcCC--CCEEEeccCCccEEEEeccC
Confidence            4799999999999999999999999999863      567888899999999999998  99999999999999999743


Q ss_pred             ccC---------C--Cccc-----------------------EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEE
Q 026295           90 EDA---------Q--PLQW-----------------------KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV  135 (240)
Q Consensus        90 ~~~---------~--~~~~-----------------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i  135 (240)
                      +.-         .  -..|                       .++.++.+|...|.++.|+|  .+.+|++++.|++++|
T Consensus       308 g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~--tg~LLaS~SdD~Tlki  385 (524)
T KOG0273|consen  308 GTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP--TGSLLASCSDDGTLKI  385 (524)
T ss_pred             ceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC--CCceEEEecCCCeeEe
Confidence            311         0  0011                       23556778999999999999  9999999999999999


Q ss_pred             EEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCC----CCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          136 YELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE----NQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~----~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                      |+...      ......+..|...|.          .+.|+|.+..    ..+..|++++.|     ++|++||+..+.+
T Consensus       386 Ws~~~------~~~~~~l~~Hskei~----------t~~wsp~g~v~~n~~~~~~l~sas~d-----stV~lwdv~~gv~  444 (524)
T KOG0273|consen  386 WSMGQ------SNSVHDLQAHSKEIY----------TIKWSPTGPVTSNPNMNLMLASASFD-----STVKLWDVESGVP  444 (524)
T ss_pred             eecCC------Ccchhhhhhhcccee----------eEeecCCCCccCCCcCCceEEEeecC-----CeEEEEEccCCce
Confidence            99876      466667778877776          8889997654    456689999999     9999999998764


Q ss_pred             CcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          212 RWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       212 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ...       +..|+.+|++|+|+||+-
T Consensus       445 i~~-------f~kH~~pVysvafS~~g~  465 (524)
T KOG0273|consen  445 IHT-------LMKHQEPVYSVAFSPNGR  465 (524)
T ss_pred             eEe-------eccCCCceEEEEecCCCc
Confidence            433       235888999999999974

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.97  E-value=1.4e-30  Score=192.88  Aligned_cols=185  Identities=15%  Similarity=0.190  Sum_probs=166.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      -+++|.+.|.|+++.|...+|++|+.|++|+|||+.     ++++..++.+|...|..+++++.  ..|+++++.|+.|+
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDla-----tg~LkltltGhi~~vr~vavS~r--HpYlFs~gedk~VK  218 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLA-----TGQLKLTLTGHIETVRGVAVSKR--HPYLFSAGEDKQVK  218 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcc-----cCeEEEeecchhheeeeeeeccc--CceEEEecCCCeeE
Confidence            478899999999999999999999999999999999     88999999999999999999998  89999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||+..+       +.++.+.+|-+.|.+++.+|  .-..|++|+.|.++++||+++      ...+..+.+|..+|.  
T Consensus       219 CwDLe~n-------kvIR~YhGHlS~V~~L~lhP--Tldvl~t~grDst~RvWDiRt------r~~V~~l~GH~~~V~--  281 (460)
T KOG0285|consen  219 CWDLEYN-------KVIRHYHGHLSGVYCLDLHP--TLDVLVTGGRDSTIRVWDIRT------RASVHVLSGHTNPVA--  281 (460)
T ss_pred             EEechhh-------hhHHHhccccceeEEEeccc--cceeEEecCCcceEEEeeecc------cceEEEecCCCCcce--
Confidence            9999877       88999999999999999999  888999999999999999998      677788889988887  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                              .|.+.|...     -+++|+.|     ++|++||+..+.....+    .   .|.-.|++++.+|.
T Consensus       282 --------~V~~~~~dp-----qvit~S~D-----~tvrlWDl~agkt~~tl----t---~hkksvral~lhP~  330 (460)
T KOG0285|consen  282 --------SVMCQPTDP-----QVITGSHD-----STVRLWDLRAGKTMITL----T---HHKKSVRALCLHPK  330 (460)
T ss_pred             --------eEEeecCCC-----ceEEecCC-----ceEEEeeeccCceeEee----e---cccceeeEEecCCc
Confidence                    899998877     69999999     99999999987633222    2   36668999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.9e-29  Score=182.28  Aligned_cols=191  Identities=17%  Similarity=0.239  Sum_probs=161.7

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.+.+|++.+.|+.|-.|+ .|+|++.|.+.-+||++     +++.+..|.+|.+.|.++.++|. .++.|++|+-|+.
T Consensus       138 ~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie-----~g~~~~~f~GH~gDV~slsl~p~-~~ntFvSg~cD~~  210 (343)
T KOG0286|consen  138 SRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIE-----TGQQTQVFHGHTGDVMSLSLSPS-DGNTFVSGGCDKS  210 (343)
T ss_pred             eeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcc-----cceEEEEecCCcccEEEEecCCC-CCCeEEecccccc
Confidence            35688999999999998854 78899999999999999     78999999999999999999993 2999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      .++||++.+       .+.++|.+|+..|.++.|.|  +|.-+++|+.|+++++||++.+.+      +..+..      
T Consensus       211 aklWD~R~~-------~c~qtF~ghesDINsv~ffP--~G~afatGSDD~tcRlyDlRaD~~------~a~ys~------  269 (343)
T KOG0286|consen  211 AKLWDVRSG-------QCVQTFEGHESDINSVRFFP--SGDAFATGSDDATCRLYDLRADQE------LAVYSH------  269 (343)
T ss_pred             eeeeeccCc-------ceeEeecccccccceEEEcc--CCCeeeecCCCceeEEEeecCCcE------Eeeecc------
Confidence            999999987       99999999999999999999  999999999999999999998533      223321      


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                        ....|.+++++|+..+.     +|..|..|     ..+.+||.-..+    .+..|.   ||.+.|.+|.-+|||.
T Consensus       270 --~~~~~gitSv~FS~SGR-----lLfagy~d-----~~c~vWDtlk~e----~vg~L~---GHeNRvScl~~s~DG~  328 (343)
T KOG0286|consen  270 --DSIICGITSVAFSKSGR-----LLFAGYDD-----FTCNVWDTLKGE----RVGVLA---GHENRVSCLGVSPDGM  328 (343)
T ss_pred             --CcccCCceeEEEccccc-----EEEeeecC-----CceeEeeccccc----eEEEee---ccCCeeEEEEECCCCc
Confidence              11345566999999987     77777777     999999976543    223334   7888999999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=2.4e-31  Score=199.67  Aligned_cols=184  Identities=16%  Similarity=0.272  Sum_probs=159.4

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      -++.|+.+|+++.|+++|.++++|+.+|.|++|+..-      ..+..++.|. ..|.+++|+|.  ...|++++.|++|
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm------nnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~i  204 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM------NNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTI  204 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccch------hhhHHhhHhhhhhhheeccCCC--CceeEEecCCCeE
Confidence            3688999999999999999999999999999999863      3345555554 89999999998  8889999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      +|||....       +....+.+|.-.|.+++|+|  .-..+++++.|..|++||.++      +.++..+..|...|. 
T Consensus       205 kiWdf~~~-------kee~vL~GHgwdVksvdWHP--~kgLiasgskDnlVKlWDprS------g~cl~tlh~HKntVl-  268 (464)
T KOG0284|consen  205 KIWDFRMP-------KEERVLRGHGWDVKSVDWHP--TKGLIASGSKDNLVKLWDPRS------GSCLATLHGHKNTVL-  268 (464)
T ss_pred             EEEeccCC-------chhheeccCCCCcceeccCC--ccceeEEccCCceeEeecCCC------cchhhhhhhccceEE-
Confidence            99999876       66777899999999999999  667799999999999999998      788888888877776 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                               .+.|+|+++     +|++++.|     ..+++||+++-+..       ....+|...|++++|+|-
T Consensus       269 ---------~~~f~~n~N-----~Llt~skD-----~~~kv~DiR~mkEl-------~~~r~Hkkdv~~~~WhP~  317 (464)
T KOG0284|consen  269 ---------AVKFNPNGN-----WLLTGSKD-----QSCKVFDIRTMKEL-------FTYRGHKKDVTSLTWHPL  317 (464)
T ss_pred             ---------EEEEcCCCC-----eeEEccCC-----ceEEEEehhHhHHH-------HHhhcchhhheeeccccc
Confidence                     999999997     99999999     99999999853322       233368889999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=6.7e-29  Score=199.16  Aligned_cols=187  Identities=19%  Similarity=0.283  Sum_probs=164.0

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +.++|-..+++++++|||+++|||+.||.|+|||..     .+.|+.+|..|+..|+.++|+..  ++.+++++.||+|+
T Consensus       345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~-----SgfC~vTFteHts~Vt~v~f~~~--g~~llssSLDGtVR  417 (893)
T KOG0291|consen  345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ-----SGFCFVTFTEHTSGVTAVQFTAR--GNVLLSSSLDGTVR  417 (893)
T ss_pred             eccccccceeeEEECCCCcEEEeccCCCcEEEEecc-----CceEEEEeccCCCceEEEEEEec--CCEEEEeecCCeEE
Confidence            457899999999999999999999999999999998     77899999999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecccceee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      .||+...       +..++|..+ .....+++..|  .|..+.+|+.|. .|.+|++++      ++++..+.+|.++|.
T Consensus       418 AwDlkRY-------rNfRTft~P~p~QfscvavD~--sGelV~AG~~d~F~IfvWS~qT------GqllDiLsGHEgPVs  482 (893)
T KOG0291|consen  418 AWDLKRY-------RNFRTFTSPEPIQFSCVAVDP--SGELVCAGAQDSFEIFVWSVQT------GQLLDILSGHEGPVS  482 (893)
T ss_pred             eeeeccc-------ceeeeecCCCceeeeEEEEcC--CCCEEEeeccceEEEEEEEeec------CeeeehhcCCCCcce
Confidence            9999765       777777753 34557788888  899888888775 489999998      799999999999998


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                +++|+|.+.     .|++|+.|     .+||+|++-...   ..+++++    +...|.+++|+|||-
T Consensus       483 ----------~l~f~~~~~-----~LaS~SWD-----kTVRiW~if~s~---~~vEtl~----i~sdvl~vsfrPdG~  533 (893)
T KOG0291|consen  483 ----------GLSFSPDGS-----LLASGSWD-----KTVRIWDIFSSS---GTVETLE----IRSDVLAVSFRPDGK  533 (893)
T ss_pred             ----------eeEEccccC-----eEEecccc-----ceEEEEEeeccC---ceeeeEe----eccceeEEEEcCCCC
Confidence                      999999998     99999999     999999987643   3355554    556899999999984

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.97  E-value=9.6e-31  Score=196.44  Aligned_cols=190  Identities=19%  Similarity=0.285  Sum_probs=163.0

Q ss_pred             cchhcccc-cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            2 DKAVATLD-KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         2 ~~~~~~h~-~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      ++.++.|. ..|++++|+|....|++|+.||+|+|||...     .+.-..+.+|.-.|.++.|.|.  ..++++++.|.
T Consensus       172 Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-----~kee~vL~GHgwdVksvdWHP~--kgLiasgskDn  244 (464)
T KOG0284|consen  172 VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-----PKEERVLRGHGWDVKSVDWHPT--KGLIASGSKDN  244 (464)
T ss_pred             hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-----CchhheeccCCCCcceeccCCc--cceeEEccCCc
Confidence            35566665 8999999999999999999999999999983     3445566899999999999998  88999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|++||.+++       .++.++..|+..|..+.|+|  ++++|++++.|..++++|+++      .+.+..+.+|...+
T Consensus       245 lVKlWDprSg-------~cl~tlh~HKntVl~~~f~~--n~N~Llt~skD~~~kv~DiR~------mkEl~~~r~Hkkdv  309 (464)
T KOG0284|consen  245 LVKLWDPRSG-------SCLATLHGHKNTVLAVKFNP--NGNWLLTGSKDQSCKVFDIRT------MKELFTYRGHKKDV  309 (464)
T ss_pred             eeEeecCCCc-------chhhhhhhccceEEEEEEcC--CCCeeEEccCCceEEEEehhH------hHHHHHhhcchhhh
Confidence            9999999988       99999999999999999999  889999999999999999996      45566777888877


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .          ++.|+|-...    +|.+|+.|     |.|..|.+......    .  .....|...|++++|+|=|
T Consensus       310 ~----------~~~WhP~~~~----lftsgg~D-----gsvvh~~v~~~~p~----~--~i~~AHd~~iwsl~~hPlG  362 (464)
T KOG0284|consen  310 T----------SLTWHPLNES----LFTSGGSD-----GSVVHWVVGLEEPL----G--EIPPAHDGEIWSLAYHPLG  362 (464)
T ss_pred             e----------eecccccccc----ceeeccCC-----CceEEEeccccccc----c--CCCcccccceeeeeccccc
Confidence            7          9999998854    89999999     99999998743211    1  1223588899999999965

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=1.6e-28  Score=177.56  Aligned_cols=193  Identities=17%  Similarity=0.258  Sum_probs=164.5

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.|++|.+.|.++.|++|.++|++++.||.+-|||..     +....+.+.-...-|...+|+|.  |+++++|+.|...
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~-----TtnK~haipl~s~WVMtCA~sPS--g~~VAcGGLdN~C  121 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSF-----TTNKVHAIPLPSSWVMTCAYSPS--GNFVACGGLDNKC  121 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcc-----cccceeEEecCceeEEEEEECCC--CCeEEecCcCcee
Confidence            4588999999999999999999999999999999998     44555666656778999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      .||++...+.+ ......+.+.+|+..+.++.|-+  +++ |++++.|.++.+||+++      ++.+..|.+|...|- 
T Consensus       122 siy~ls~~d~~-g~~~v~r~l~gHtgylScC~f~d--D~~-ilT~SGD~TCalWDie~------g~~~~~f~GH~gDV~-  190 (343)
T KOG0286|consen  122 SIYPLSTRDAE-GNVRVSRELAGHTGYLSCCRFLD--DNH-ILTGSGDMTCALWDIET------GQQTQVFHGHTGDVM-  190 (343)
T ss_pred             EEEeccccccc-ccceeeeeecCccceeEEEEEcC--CCc-eEecCCCceEEEEEccc------ceEEEEecCCcccEE-
Confidence            99999865332 12245677889999999999976  665 99999999999999998      788889999988887 


Q ss_pred             cccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               ++++.| +.+     .|++|+.|     +..+|||++.+...    ..   +.+|++.|++|.|.|+|-
T Consensus       191 ---------slsl~p~~~n-----tFvSg~cD-----~~aklWD~R~~~c~----qt---F~ghesDINsv~ffP~G~  242 (343)
T KOG0286|consen  191 ---------SLSLSPSDGN-----TFVSGGCD-----KSAKLWDVRSGQCV----QT---FEGHESDINSVRFFPSGD  242 (343)
T ss_pred             ---------EEecCCCCCC-----eEEecccc-----cceeeeeccCccee----Ee---ecccccccceEEEccCCC
Confidence                     999999 544     89999999     99999999987543    23   337888999999999983

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1e-28  Score=200.39  Aligned_cols=189  Identities=19%  Similarity=0.301  Sum_probs=161.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ...|.++.|+++|+.|++++.|+.+++|+....   .......+.+|...|.+++|+|+  +.++++++.|++++|||+.
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~---~~~~~~~l~~h~~~v~~~~fs~d--~~~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGI---KSNLLRELSGHTRGVSDVAFSPD--GSYLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccc---cchhhccccccccceeeeEECCC--CcEEEEecCCceEEEeecc
Confidence            568999999999999999999999999999522   10256666889999999999999  9999999999999999993


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      ...      ..++++++|...|++++|+|  .++.+++|+.|++|+|||+++      +++...+..|...+.       
T Consensus       234 ~~~------~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~------~~~~~~l~~hs~~is-------  292 (456)
T KOG0266|consen  234 DDG------RNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRT------GECVRKLKGHSDGIS-------  292 (456)
T ss_pred             CCC------eEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccC------CeEEEeeeccCCceE-------
Confidence            221      78999999999999999999  889999999999999999998      788999999998888       


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                         +++|++++.     +|++++.|     +.|+|||+.++...  ...++...+... +++.++|+|++.
T Consensus       293 ---~~~f~~d~~-----~l~s~s~d-----~~i~vwd~~~~~~~--~~~~~~~~~~~~-~~~~~~fsp~~~  347 (456)
T KOG0266|consen  293 ---GLAFSPDGN-----LLVSASYD-----GTIRVWDLETGSKL--CLKLLSGAENSA-PVTSVQFSPNGK  347 (456)
T ss_pred             ---EEEECCCCC-----EEEEcCCC-----ccEEEEECCCCcee--eeecccCCCCCC-ceeEEEECCCCc
Confidence               999999998     89999888     99999999987633  233334333333 699999999973

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=2.7e-28  Score=172.77  Aligned_cols=193  Identities=19%  Similarity=0.269  Sum_probs=160.4

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ++..|...|+++.|..+|+.+++|++||+++|||++     ...+-+.++ |..+|+++...|+  ...|+++..+|.|+
T Consensus        78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR-----~~~~qR~~~-~~spVn~vvlhpn--QteLis~dqsg~ir  149 (311)
T KOG0315|consen   78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR-----SLSCQRNYQ-HNSPVNTVVLHPN--QTELISGDQSGNIR  149 (311)
T ss_pred             EEeccCCceEEEEEeecCeEEEecCCCceEEEEecc-----Ccccchhcc-CCCCcceEEecCC--cceEEeecCCCcEE
Confidence            467888999999999999999999999999999998     434444444 6799999999998  67789999999999


Q ss_pred             EEEeeeccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           84 LWEEIVEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      +||+...       .+... +......|.++...|  +|.+++.+...|.+.+|++.........+++.+++.|...+. 
T Consensus       150 vWDl~~~-------~c~~~liPe~~~~i~sl~v~~--dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il-  219 (311)
T KOG0315|consen  150 VWDLGEN-------SCTHELIPEDDTSIQSLTVMP--DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL-  219 (311)
T ss_pred             EEEccCC-------ccccccCCCCCcceeeEEEcC--CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE-
Confidence            9999764       33333 345567899999999  999999999999999999987666666778888888877766 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               ...++|+..     +||++++|     .+++||+.++.   +.+...++   +|..+|++.+||-|+.
T Consensus       220 ---------~C~lSPd~k-----~lat~ssd-----ktv~iwn~~~~---~kle~~l~---gh~rWvWdc~FS~dg~  271 (311)
T KOG0315|consen  220 ---------RCLLSPDVK-----YLATCSSD-----KTVKIWNTDDF---FKLELVLT---GHQRWVWDCAFSADGE  271 (311)
T ss_pred             ---------EEEECCCCc-----EEEeecCC-----ceEEEEecCCc---eeeEEEee---cCCceEEeeeeccCcc
Confidence                     778999998     99999999     99999998874   23334444   5777999999999873

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=8.6e-29  Score=175.75  Aligned_cols=185  Identities=18%  Similarity=0.327  Sum_probs=153.4

Q ss_pred             ccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            9 DKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         9 ~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      .+.+..++|+++. +.+++++.||+++|||...+    -.++..++.|+.+|.++.|++. .+..+++++.|++|++|+.
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~----s~Pi~~~kEH~~EV~Svdwn~~-~r~~~ltsSWD~TiKLW~~  134 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP----SKPIHKFKEHKREVYSVDWNTV-RRRIFLTSSWDGTIKLWDP  134 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCC----CcchhHHHhhhhheEEeccccc-cceeEEeeccCCceEeecC
Confidence            4578999999964 78999999999999997653    3589999999999999999886 3567888899999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      ..+       +.++++.+|...|...+|+|+ .++.+++++.|+++++||++.+     ++... +..|...+.      
T Consensus       135 ~r~-------~Sv~Tf~gh~~~Iy~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Eil------  194 (311)
T KOG0277|consen  135 NRP-------NSVQTFNGHNSCIYQAAFSPH-IPNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEIL------  194 (311)
T ss_pred             CCC-------cceEeecCCccEEEEEecCCC-CCCeEEEccCCceEEEEEecCC-----CceeE-EEeccceeE------
Confidence            776       789999999999999999997 5667999999999999999975     33332 566665554      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                          ++.|+....    .+|+||+.|     +.||+||+++-.   +++.++.   +|+-+|+.|.|||-
T Consensus       195 ----~cdw~ky~~----~vl~Tg~vd-----~~vr~wDir~~r---~pl~eL~---gh~~AVRkvk~Sph  245 (311)
T KOG0277|consen  195 ----CCDWSKYNH----NVLATGGVD-----NLVRGWDIRNLR---TPLFELN---GHGLAVRKVKFSPH  245 (311)
T ss_pred             ----eecccccCC----cEEEecCCC-----ceEEEEehhhcc---ccceeec---CCceEEEEEecCcc
Confidence                778988764    399999999     999999998744   3344443   78889999999995

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.4e-29  Score=187.66  Aligned_cols=194  Identities=21%  Similarity=0.311  Sum_probs=170.8

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +..|++|.+.|..++|+..|++||+++.|-.+++||...    ..+++..+.+|+..|.+++|-|.  |+++++++.|.+
T Consensus       143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~----~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~t  216 (406)
T KOG0295|consen  143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDT----FFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNT  216 (406)
T ss_pred             hhhhhccccceeEEEEecCccEEEecCCccchhheeHHH----HHHHHHHhcCcccceeeEEEEec--CCeeeecccccc
Confidence            356899999999999999999999999999999999983    35677888899999999999999  999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |+.|++.++       .++.++.+|...|..+..+.  +|.++++++.|.+|++|-+.+      .++...+..|..++.
T Consensus       217 ik~We~~tg-------~cv~t~~~h~ewvr~v~v~~--DGti~As~s~dqtl~vW~~~t------~~~k~~lR~hEh~vE  281 (406)
T KOG0295|consen  217 IKAWECDTG-------YCVKTFPGHSEWVRMVRVNQ--DGTIIASCSNDQTLRVWVVAT------KQCKAELREHEHPVE  281 (406)
T ss_pred             eeEEecccc-------eeEEeccCchHhEEEEEecC--CeeEEEecCCCceEEEEEecc------chhhhhhhccccceE
Confidence            999999988       99999999999999998866  999999999999999999987      677778888888777


Q ss_pred             ccccccceeeeEEEeCCCCC----------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          162 MFRKASCISASISWNPQKGE----------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~----------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                                +++|.|....          +.++++.+++.|     ++|++||+.++.+.+++    .   +|.++|+.
T Consensus       282 ----------ci~wap~~~~~~i~~at~~~~~~~~l~s~SrD-----ktIk~wdv~tg~cL~tL----~---ghdnwVr~  339 (406)
T KOG0295|consen  282 ----------CIAWAPESSYPSISEATGSTNGGQVLGSGSRD-----KTIKIWDVSTGMCLFTL----V---GHDNWVRG  339 (406)
T ss_pred             ----------EEEecccccCcchhhccCCCCCccEEEeeccc-----ceEEEEeccCCeEEEEE----e---cccceeee
Confidence                      8888885433          345699999999     99999999998654433    3   68889999


Q ss_pred             EEEecCC
Q 026295          232 VAWALNI  238 (240)
Q Consensus       232 v~~sp~~  238 (240)
                      ++|+|-|
T Consensus       340 ~af~p~G  346 (406)
T KOG0295|consen  340 VAFSPGG  346 (406)
T ss_pred             eEEcCCC
Confidence            9999976

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.6e-29  Score=196.54  Aligned_cols=192  Identities=15%  Similarity=0.188  Sum_probs=166.7

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+..|.+-|+|++.+|...+++++|.|-+|++||.++    .|.+.+++.+|+..|.+++|+|. +.+.|++++.|++|
T Consensus        91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~----~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN----EWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTV  165 (794)
T ss_pred             EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC----ceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccE
Confidence            55788999999999999999999999999999999986    78999999999999999999997 46889999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++|.+...       .+..++++|...|.++.+-+..+-.+|++|+.|.+|+|||.++      ..|++++.+|...+. 
T Consensus       166 KVWslgs~-------~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt------k~CV~TLeGHt~Nvs-  231 (794)
T KOG0276|consen  166 KVWSLGSP-------HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT------KSCVQTLEGHTNNVS-  231 (794)
T ss_pred             EEEEcCCC-------CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch------HHHHHHhhcccccce-
Confidence            99999766       7889999999999999999855556999999999999999998      789999999988887 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               .++|+|.-+     ++++|+.|     |+||||+..+-..+..+    .-..+   .|++|+-.+..+
T Consensus       232 ---------~v~fhp~lp-----iiisgsED-----GTvriWhs~Ty~lE~tL----n~gle---RvW~I~~~k~~~  282 (794)
T KOG0276|consen  232 ---------FVFFHPELP-----IIISGSED-----GTVRIWNSKTYKLEKTL----NYGLE---RVWCIAAHKGDG  282 (794)
T ss_pred             ---------EEEecCCCc-----EEEEecCC-----ccEEEecCcceehhhhh----hcCCc---eEEEEeecCCCC
Confidence                     999999988     99999999     99999998764433222    21112   688887766554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=2.4e-29  Score=202.34  Aligned_cols=163  Identities=18%  Similarity=0.239  Sum_probs=151.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .++|..+|..+.|+|.|-+||||+.|++.++|...     ...+++.+.+|-+.|.|+.|.|+  ..|+++|+.|.+|++
T Consensus       489 y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-----~~~PlRifaghlsDV~cv~FHPN--s~Y~aTGSsD~tVRl  561 (707)
T KOG0263|consen  489 YKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-----HNKPLRIFAGHLSDVDCVSFHPN--SNYVATGSSDRTVRL  561 (707)
T ss_pred             ecCCCcceeeEEecCCceEEEecCCCceeeeeecc-----cCCchhhhcccccccceEEECCc--ccccccCCCCceEEE
Confidence            45799999999999999999999999999999998     45788999999999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||+.++       ..++.|.+|..+|.+++|+|  .|.+|++|+.||.|++||+..      +.++..+..|...+.   
T Consensus       562 WDv~~G-------~~VRiF~GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~iWDl~~------~~~v~~l~~Ht~ti~---  623 (707)
T KOG0263|consen  562 WDVSTG-------NSVRIFTGHKGPVTALAFSP--CGRYLASGDEDGLIKIWDLAN------GSLVKQLKGHTGTIY---  623 (707)
T ss_pred             EEcCCC-------cEEEEecCCCCceEEEEEcC--CCceEeecccCCcEEEEEcCC------CcchhhhhcccCcee---
Confidence            999888       88999999999999999999  999999999999999999987      677777888876666   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                             +++|+.++.     +||+|+.|     +.|++||+...
T Consensus       624 -------SlsFS~dg~-----vLasgg~D-----nsV~lWD~~~~  651 (707)
T KOG0263|consen  624 -------SLSFSRDGN-----VLASGGAD-----NSVRLWDLTKV  651 (707)
T ss_pred             -------EEEEecCCC-----EEEecCCC-----CeEEEEEchhh
Confidence                   999999998     99999999     99999998653

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.1e-28  Score=171.30  Aligned_cols=184  Identities=15%  Similarity=0.189  Sum_probs=157.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      |..++++|..++|+-+|++.++|+.|.+|++|+..     .+.++.++.+|..+|.+++.+.+  ...|++++.|..|.+
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~-----rg~liktYsghG~EVlD~~~s~D--nskf~s~GgDk~v~v   85 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPL-----RGALIKTYSGHGHEVLDAALSSD--NSKFASCGGDKAVQV   85 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeeccc-----ccceeeeecCCCceeeecccccc--ccccccCCCCceEEE
Confidence            56789999999999999999999999999999998     67899999999999999999988  888999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||+.++       +..+.+.+|...|+.+.|+.  +...+++|+.|.++++||.++    ...++++.+......+.   
T Consensus        86 wDV~TG-------kv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS----~s~ePiQildea~D~V~---  149 (307)
T KOG0316|consen   86 WDVNTG-------KVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRS----RSFEPIQILDEAKDGVS---  149 (307)
T ss_pred             EEcccC-------eeeeecccccceeeEEEecC--cceEEEeccccceeEEEEccc----CCCCccchhhhhcCcee---
Confidence            999988       99999999999999999966  888999999999999999997    34667777665555444   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             ++.....       .+++|+.|     |++|.||++.+...--         ..+.+|++++|+||+.
T Consensus       150 -------Si~v~~h-------eIvaGS~D-----GtvRtydiR~G~l~sD---------y~g~pit~vs~s~d~n  196 (307)
T KOG0316|consen  150 -------SIDVAEH-------EIVAGSVD-----GTVRTYDIRKGTLSSD---------YFGHPITSVSFSKDGN  196 (307)
T ss_pred             -------EEEeccc-------EEEeeccC-----CcEEEEEeecceeehh---------hcCCcceeEEecCCCC
Confidence                   5544322       58888888     9999999998753211         1344999999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=9.7e-28  Score=194.74  Aligned_cols=168  Identities=21%  Similarity=0.345  Sum_probs=147.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|...|.+++|+|+++++++++.|++|+|||+..    ....+.++++|...|++++|+|.  ++++++|+.|++|+
T Consensus       198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~----~~~~~~~l~gH~~~v~~~~f~p~--g~~i~Sgs~D~tvr  271 (456)
T KOG0266|consen  198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKD----DGRNLKTLKGHSTYVTSVAFSPD--GNLLVSGSDDGTVR  271 (456)
T ss_pred             cccccccceeeeEECCCCcEEEEecCCceEEEeeccC----CCeEEEEecCCCCceEEEEecCC--CCEEEEecCCCcEE
Confidence            4567999999999999999999999999999999942    45788999999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee--EEeeeecccce--
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ--LQAEFQNAIDS--  159 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--~~~~~~~~~~~--  159 (240)
                      +||++++       ++...+..|...|.+++|++  ++.+|++++.|+.|++||+.+      +.  +...+..+...  
T Consensus       272 iWd~~~~-------~~~~~l~~hs~~is~~~f~~--d~~~l~s~s~d~~i~vwd~~~------~~~~~~~~~~~~~~~~~  336 (456)
T KOG0266|consen  272 IWDVRTG-------ECVRKLKGHSDGISGLAFSP--DGNLLVSASYDGTIRVWDLET------GSKLCLKLLSGAENSAP  336 (456)
T ss_pred             EEeccCC-------eEEEeeeccCCceEEEEECC--CCCEEEEcCCCccEEEEECCC------CceeeeecccCCCCCCc
Confidence            9999886       99999999999999999999  999999999999999999987      34  34444443322  


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                      +.          .++|+|++.     +|++++.|     +.+++|++......
T Consensus       337 ~~----------~~~fsp~~~-----~ll~~~~d-----~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  337 VT----------SVQFSPNGK-----YLLSASLD-----RTLKLWDLRSGKSV  369 (456)
T ss_pred             ee----------EEEECCCCc-----EEEEecCC-----CeEEEEEccCCcce
Confidence            34          899999998     89999998     99999999876533

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.8e-27  Score=191.20  Aligned_cols=195  Identities=14%  Similarity=0.199  Sum_probs=149.0

Q ss_pred             hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +.+|.+.|++++|+| ++++|++|+.|++|+|||+.....  ....++..+.+|...|.+++|+|. .+.+|++++.|+.
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~-~~~iLaSgs~Dgt  149 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPS-AMNVLASAGADMV  149 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcC-CCCEEEEEeCCCE
Confidence            678999999999999 889999999999999999974310  012356778899999999999997 1368999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |+|||+..+       ..+..+..|...|.+++|+|  ++.+|++++.|++|++||+++      .+.+..+..|.....
T Consensus       150 VrIWDl~tg-------~~~~~l~~h~~~V~sla~sp--dG~lLatgs~Dg~IrIwD~rs------g~~v~tl~~H~~~~~  214 (493)
T PTZ00421        150 VNVWDVERG-------KAVEVIKCHSDQITSLEWNL--DGSLLCTTSKDKKLNIIDPRD------GTIVSSVEAHASAKS  214 (493)
T ss_pred             EEEEECCCC-------eEEEEEcCCCCceEEEEEEC--CCCEEEEecCCCEEEEEECCC------CcEEEEEecCCCCcc
Confidence            999999876       77888888999999999999  999999999999999999987      455556666643221


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEe----cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGF----NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~----~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                               ..+.|.++..     .+++++    .|     +.|++||++........   ...  .+...+....|+||
T Consensus       215 ---------~~~~w~~~~~-----~ivt~G~s~s~D-----r~VklWDlr~~~~p~~~---~~~--d~~~~~~~~~~d~d  270 (493)
T PTZ00421        215 ---------QRCLWAKRKD-----LIITLGCSKSQQ-----RQIMLWDTRKMASPYST---VDL--DQSSALFIPFFDED  270 (493)
T ss_pred             ---------eEEEEcCCCC-----eEEEEecCCCCC-----CeEEEEeCCCCCCceeE---ecc--CCCCceEEEEEcCC
Confidence                     1567888765     455543    34     89999999865433211   111  12335666677877


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       271 ~~  272 (493)
T PTZ00421        271 TN  272 (493)
T ss_pred             CC
Confidence            63

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3e-28  Score=197.37  Aligned_cols=194  Identities=16%  Similarity=0.261  Sum_probs=151.4

Q ss_pred             cchhc-ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------------------CC---------
Q 026295            2 DKAVA-TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP----------------------------SS---------   43 (240)
Q Consensus         2 ~~~~~-~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----------------------------~~---------   43 (240)
                      .++++ .|.++|.++.||+||+|||+|+.|+.|+||.+...                            ..         
T Consensus       259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~  338 (712)
T KOG0283|consen  259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS  338 (712)
T ss_pred             eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence            45677 89999999999999999999999999999987650                            00         


Q ss_pred             ------C------------cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee
Q 026295           44 ------S------------SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES  105 (240)
Q Consensus        44 ------~------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~  105 (240)
                            .            .-+++..+++|.+.|.+|.|+.+   ++|++++.|.+|+||++...       .++..|. 
T Consensus       339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn---~fLLSSSMDKTVRLWh~~~~-------~CL~~F~-  407 (712)
T KOG0283|consen  339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN---NFLLSSSMDKTVRLWHPGRK-------ECLKVFS-  407 (712)
T ss_pred             cccccCCccccCCCccccccccchhhhhccchhheecccccC---CeeEeccccccEEeecCCCc-------ceeeEEe-
Confidence                  0            11344567899999999999774   78999999999999999876       8888886 


Q ss_pred             ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCc
Q 026295          106 TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGS  185 (240)
Q Consensus       106 ~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~  185 (240)
                      |...|+||+|+|. |.+||++|+.||.|+||++..      .+.. .......-|+          +++|.|+|.     
T Consensus       408 HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d------~~Vv-~W~Dl~~lIT----------Avcy~PdGk-----  464 (712)
T KOG0283|consen  408 HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISD------KKVV-DWNDLRDLIT----------AVCYSPDGK-----  464 (712)
T ss_pred             cCCeeEEEEeccc-CCCcEeecccccceEEeecCc------CeeE-eehhhhhhhe----------eEEeccCCc-----
Confidence            7799999999997 678899999999999999986      3333 2223334455          999999988     


Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC----CCCCCceEEEEEecC
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP----EDRSDEVYAVAWALN  237 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~----~~h~~~v~~v~~sp~  237 (240)
                      +.++|+.+     |.+++|+....+-.  ....+..+    ..|. .|+.++|.|.
T Consensus       465 ~avIGt~~-----G~C~fY~t~~lk~~--~~~~I~~~~~Kk~~~~-rITG~Q~~p~  512 (712)
T KOG0283|consen  465 GAVIGTFN-----GYCRFYDTEGLKLV--SDFHIRLHNKKKKQGK-RITGLQFFPG  512 (712)
T ss_pred             eEEEEEec-----cEEEEEEccCCeEE--EeeeEeeccCccccCc-eeeeeEecCC
Confidence            89999999     99999997654322  11111111    0133 7999999984

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-28  Score=172.92  Aligned_cols=206  Identities=23%  Similarity=0.409  Sum_probs=171.3

Q ss_pred             chhcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+|.+|.++|..++|..  .|.+||+++.||.|.||.-.+.   .+........|...|++++|.|..+|-.|++++.||
T Consensus        50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g---~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG---RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC---chhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            35789999999999976  8999999999999999998754   677778888999999999999998899999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-CC-----------cEEEEEeCCCcEEEEEecCccccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-TS-----------LKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~-----------~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                      .|.+.+++..    ..|........|+-.|++++|.|.. .|           ..|++|+.|..|+||+....    .|.
T Consensus       127 ~vsvl~~~~~----g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~----~w~  198 (299)
T KOG1332|consen  127 KVSVLTYDSS----GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD----SWK  198 (299)
T ss_pred             cEEEEEEcCC----CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc----chh
Confidence            9999999764    2345556667899999999999841 13           56999999999999998863    578


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCc
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDE  228 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~  228 (240)
                      +...|..|...++          .++|+|.... ...+||+++.|     |+|.||..+.....|+... ++.   ..+.
T Consensus       199 ~e~~l~~H~dwVR----------DVAwaP~~gl-~~s~iAS~SqD-----g~viIwt~~~e~e~wk~tl-l~~---f~~~  258 (299)
T KOG1332|consen  199 LERTLEGHKDWVR----------DVAWAPSVGL-PKSTIASCSQD-----GTVIIWTKDEEYEPWKKTL-LEE---FPDV  258 (299)
T ss_pred             hhhhhhhcchhhh----------hhhhccccCC-CceeeEEecCC-----CcEEEEEecCccCcccccc-ccc---CCcc
Confidence            8888999999999          9999998753 24489999999     9999999986656665432 222   4448


Q ss_pred             eEEEEEecCCC
Q 026295          229 VYAVAWALNIG  239 (240)
Q Consensus       229 v~~v~~sp~~~  239 (240)
                      ++.++||+.+.
T Consensus       259 ~w~vSWS~sGn  269 (299)
T KOG1332|consen  259 VWRVSWSLSGN  269 (299)
T ss_pred             eEEEEEecccc
Confidence            99999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.96  E-value=1.3e-27  Score=182.56  Aligned_cols=192  Identities=17%  Similarity=0.318  Sum_probs=162.0

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC------------------------------------CcEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS------------------------------------SSFT   47 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~------------------------------------~~~~   47 (240)
                      .+..|.++|.++.|+..|.+|++++.|+++.|||......                                    +.-.
T Consensus       271 tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~  350 (524)
T KOG0273|consen  271 TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDR  350 (524)
T ss_pred             hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCC
Confidence            4677999999999999999999999999999999742210                                    0113


Q ss_pred             EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec-------CC
Q 026295           48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS-------ST  120 (240)
Q Consensus        48 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~  120 (240)
                      ++.++.+|.++|.+|.|+|.  +.+|++++.|++++||.....       .....+..|...|..+.|+|.       ..
T Consensus       351 P~~t~~GH~g~V~alk~n~t--g~LLaS~SdD~TlkiWs~~~~-------~~~~~l~~Hskei~t~~wsp~g~v~~n~~~  421 (524)
T KOG0273|consen  351 PVKTFIGHHGEVNALKWNPT--GSLLASCSDDGTLKIWSMGQS-------NSVHDLQAHSKEIYTIKWSPTGPVTSNPNM  421 (524)
T ss_pred             cceeeecccCceEEEEECCC--CceEEEecCCCeeEeeecCCC-------cchhhhhhhccceeeEeecCCCCccCCCcC
Confidence            44667789999999999999  999999999999999998665       677888899999999999983       12


Q ss_pred             CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCe
Q 026295          121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNS  200 (240)
Q Consensus       121 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~  200 (240)
                      +..+++++.|++|++||...      +.++..|..|..+|.          +|+|+|++.     ++|+|+.|     |.
T Consensus       422 ~~~l~sas~dstV~lwdv~~------gv~i~~f~kH~~pVy----------svafS~~g~-----ylAsGs~d-----g~  475 (524)
T KOG0273|consen  422 NLMLASASFDSTVKLWDVES------GVPIHTLMKHQEPVY----------SVAFSPNGR-----YLASGSLD-----GC  475 (524)
T ss_pred             CceEEEeecCCeEEEEEccC------CceeEeeccCCCceE----------EEEecCCCc-----EEEecCCC-----Ce
Confidence            35799999999999999998      788899999998888          999999998     99999999     99


Q ss_pred             EEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          201 SKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       201 i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      |.||+.++++    ++....    -.+.|..|+|+-++
T Consensus       476 V~iws~~~~~----l~~s~~----~~~~Ifel~Wn~~G  505 (524)
T KOG0273|consen  476 VHIWSTKTGK----LVKSYQ----GTGGIFELCWNAAG  505 (524)
T ss_pred             eEeccccchh----eeEeec----CCCeEEEEEEcCCC
Confidence            9999998765    333332    33469999999876

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=2e-27  Score=172.41  Aligned_cols=186  Identities=14%  Similarity=0.241  Sum_probs=155.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +.+|++.|..+.|+|+|..||+|+.|..|.+|+....    .+....+++|.++|..+.|.++  +..+++++.|.+|+.
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd----ceN~~~lkgHsgAVM~l~~~~d--~s~i~S~gtDk~v~~  116 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD----CENFWVLKGHSGAVMELHGMRD--GSHILSCGTDKTVRG  116 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc----ccceeeeccccceeEeeeeccC--CCEEEEecCCceEEE
Confidence            5679999999999999999999999999999998753    3456677799999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||.+++       +..+.++.|..-|..+.  |.+-|. .+.+++.|+++++||+++      .+.++.+... ..+.  
T Consensus       117 wD~~tG-------~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~------k~~~~t~~~k-yqlt--  178 (338)
T KOG0265|consen  117 WDAETG-------KRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRK------KEAIKTFENK-YQLT--  178 (338)
T ss_pred             Eecccc-------eeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecc------cchhhccccc-eeEE--
Confidence            999988       99999999999999887  443444 577888999999999997      3444443221 1223  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              ++.|...+.     -+.+|+-|     +.|++||++.....+.+    .   ||.++|+.+..+|++.
T Consensus       179 --------Av~f~d~s~-----qv~sggId-----n~ikvWd~r~~d~~~~l----s---Gh~DtIt~lsls~~gs  229 (338)
T KOG0265|consen  179 --------AVGFKDTSD-----QVISGGID-----NDIKVWDLRKNDGLYTL----S---GHADTITGLSLSRYGS  229 (338)
T ss_pred             --------EEEeccccc-----ceeecccc-----CceeeeccccCcceEEe----e---cccCceeeEEeccCCC
Confidence                    899998887     58899998     99999999887654333    3   7888999999999985

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.6e-28  Score=190.49  Aligned_cols=193  Identities=17%  Similarity=0.222  Sum_probs=169.9

Q ss_pred             CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |++.+.-.+-+|++..|-+-.+.+++|+.|..||||+..     +++.+..|..|...|.+++.+|.  -.++++++.|-
T Consensus        47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-----t~ekV~~FeAH~DyIR~iavHPt--~P~vLtsSDDm  119 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-----TGEKVKTFEAHSDYIRSIAVHPT--LPYVLTSSDDM  119 (794)
T ss_pred             eeeeeeecccchhhheeeeccceEEEecCCceEEEEecc-----cceeeEEeeccccceeeeeecCC--CCeEEecCCcc
Confidence            556666777799999999999999999999999999999     88999999999999999999999  89999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +|++||-+.      .|.+.++|.+|+.-|.+++|.|. +.+.+++++.|++|++|.+.+      ..+..++.+|...|
T Consensus       120 ~iKlW~we~------~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs------~~~nfTl~gHekGV  186 (794)
T KOG0276|consen  120 TIKLWDWEN------EWACEQTFEGHEHYVMQVAFNPK-DPNTFASASLDRTVKVWSLGS------PHPNFTLEGHEKGV  186 (794)
T ss_pred             EEEEeeccC------ceeeeeEEcCcceEEEEEEecCC-CccceeeeeccccEEEEEcCC------CCCceeeeccccCc
Confidence            999999975      48999999999999999999996 455699999999999999987      35666777887666


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .          +|.|-+.+.   .++|++|+.|     .+|+|||+++..+..++    +   ||...|..+.|+|..
T Consensus       187 N----------~Vdyy~~gd---kpylIsgaDD-----~tiKvWDyQtk~CV~TL----e---GHt~Nvs~v~fhp~l  239 (794)
T KOG0276|consen  187 N----------CVDYYTGGD---KPYLISGADD-----LTIKVWDYQTKSCVQTL----E---GHTNNVSFVFFHPEL  239 (794)
T ss_pred             c----------eEEeccCCC---cceEEecCCC-----ceEEEeecchHHHHHHh----h---cccccceEEEecCCC
Confidence            5          999988876   6699999998     99999999997655333    3   788899999999964

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.9e-27  Score=197.32  Aligned_cols=207  Identities=17%  Similarity=0.297  Sum_probs=156.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-------------CCCcEEEEeEeeecCccEEEEEEcCCCCC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-------------SSSSFTCNLKTKVHAGAILKVVWVPPEFG   70 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~   70 (240)
                      .+..|.+.|.|++|+|||++||+|+.|+.|.||+....             ....|+....+.+|.+.|.+++|+|+  +
T Consensus        64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~--~  141 (942)
T KOG0973|consen   64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD--D  141 (942)
T ss_pred             eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC--c
Confidence            35679999999999999999999999999999998730             12367889999999999999999999  9


Q ss_pred             CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           71 DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        71 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      .+|++++.|++|.||+..+-       ..+..+++|...|-.+.|+|  -|+|||+-+.|++|+||++.+      |.+.
T Consensus       142 ~~lvS~s~DnsViiwn~~tF-------~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~d------w~i~  206 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTF-------ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSD------WGIE  206 (942)
T ss_pred             cEEEEecccceEEEEccccc-------eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEccc------ceee
Confidence            99999999999999999765       89999999999999999999  999999999999999999755      4444


Q ss_pred             eeeeccccee-----------ecccc-------------------------------ccceeeeEEEeCCCCC-------
Q 026295          151 AEFQNAIDSV-----------TMFRK-------------------------------ASCISASISWNPQKGE-------  181 (240)
Q Consensus       151 ~~~~~~~~~v-----------~~~~~-------------------------------~~~~~~~v~~~p~~~~-------  181 (240)
                      +.+..+....           +|.|.                               |...+.++.|+|.--+       
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~  286 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGT  286 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCC
Confidence            4443322211           01111                               1112235555553211       


Q ss_pred             -CCC----ceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          182 -NQG----SSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       182 -~~~----~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                       .+.    ..+|+|+.|     ++|.||........... ..     =....|.+++|+|||
T Consensus       287 ~~~~~~~y~i~AvgSqD-----rSlSVW~T~~~RPl~vi-~~-----lf~~SI~DmsWspdG  337 (942)
T KOG0973|consen  287 STQPNCYYCIAAVGSQD-----RSLSVWNTALPRPLFVI-HN-----LFNKSIVDMSWSPDG  337 (942)
T ss_pred             ccCCCcceEEEEEecCC-----ccEEEEecCCCCchhhh-hh-----hhcCceeeeeEcCCC
Confidence             112    278889998     99999997443322222 11     133489999999998

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.7e-27  Score=174.94  Aligned_cols=189  Identities=13%  Similarity=0.167  Sum_probs=168.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+..|+..|.+++|-|.|.++++++.|.+|+.|++.     ++.++.++.+|..-|..+..+.+  |.++++++.|.+|
T Consensus       187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-----tg~cv~t~~~h~ewvr~v~v~~D--Gti~As~s~dqtl  259 (406)
T KOG0295|consen  187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-----TGYCVKTFPGHSEWVRMVRVNQD--GTIIASCSNDQTL  259 (406)
T ss_pred             HHhcCcccceeeEEEEecCCeeeecccccceeEEecc-----cceeEEeccCchHhEEEEEecCC--eeEEEecCCCceE
Confidence            3466788999999999999999999999999999999     88999999999999999999888  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec--------C-----CCcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS--------S-----TSLKLVAAYSDGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~-----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  149 (240)
                      ++|-+.++       ++...++.|+..|.+++|.|.        +     .++++.+++.|++|++||+.+      +.+
T Consensus       260 ~vW~~~t~-------~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~t------g~c  326 (406)
T KOG0295|consen  260 RVWVVATK-------QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVST------GMC  326 (406)
T ss_pred             EEEEeccc-------hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccC------CeE
Confidence            99999887       788889999999999999872        1     135899999999999999998      799


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                      +.++.+|..+|+          .++|+|.|.     ||+++..|     +++++||+.+..+...+    +   .|+.-|
T Consensus       327 L~tL~ghdnwVr----------~~af~p~Gk-----yi~ScaDD-----ktlrvwdl~~~~cmk~~----~---ah~hfv  379 (406)
T KOG0295|consen  327 LFTLVGHDNWVR----------GVAFSPGGK-----YILSCADD-----KTLRVWDLKNLQCMKTL----E---AHEHFV  379 (406)
T ss_pred             EEEEecccceee----------eeEEcCCCe-----EEEEEecC-----CcEEEEEeccceeeecc----C---CCccee
Confidence            999999999999          999999998     89999988     99999999987655433    3   366699


Q ss_pred             EEEEEecCC
Q 026295          230 YAVAWALNI  238 (240)
Q Consensus       230 ~~v~~sp~~  238 (240)
                      ++++|+.+-
T Consensus       380 t~lDfh~~~  388 (406)
T KOG0295|consen  380 TSLDFHKTA  388 (406)
T ss_pred             EEEecCCCC
Confidence            999998753

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=4.1e-28  Score=172.36  Aligned_cols=190  Identities=17%  Similarity=0.278  Sum_probs=158.3

Q ss_pred             hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ++++|...|.++.|++ .++.+++++.|++|++|+..     ....+.++.+|...|+..+|+|. .+++|++++.|+.+
T Consensus        99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~-----r~~Sv~Tf~gh~~~Iy~a~~sp~-~~nlfas~Sgd~~l  172 (311)
T KOG0277|consen   99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN-----RPNSVQTFNGHNSCIYQAAFSPH-IPNLFASASGDGTL  172 (311)
T ss_pred             HHHhhhhheEEeccccccceeEEeeccCCceEeecCC-----CCcceEeecCCccEEEEEecCCC-CCCeEEEccCCceE
Confidence            4788999999999999 45678888999999999998     44678899999999999999997 57899999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||++...      + ...+..|...+.++.|+. .+...|++|+.|+.|++||++.-     ..++.++.+|.-.|+ 
T Consensus       173 ~lwdvr~~g------k-~~~i~ah~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~-----r~pl~eL~gh~~AVR-  238 (311)
T KOG0277|consen  173 RLWDVRSPG------K-FMSIEAHNSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNL-----RTPLFELNGHGLAVR-  238 (311)
T ss_pred             EEEEecCCC------c-eeEEEeccceeEeecccc-cCCcEEEecCCCceEEEEehhhc-----cccceeecCCceEEE-
Confidence            999998652      3 333888888999999985 36678999999999999999963     356778888888888 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                               .|.|+|....    +||+++.|     -++||||........   +   ....|++-|..+.||+-
T Consensus       239 ---------kvk~Sph~~~----lLaSasYD-----mT~riw~~~~~ds~~---e---~~~~HtEFv~g~Dws~~  289 (311)
T KOG0277|consen  239 ---------KVKFSPHHAS----LLASASYD-----MTVRIWDPERQDSAI---E---TVDHHTEFVCGLDWSLF  289 (311)
T ss_pred             ---------EEecCcchhh----Hhhhcccc-----ceEEecccccchhhh---h---hhhccceEEeccccccc
Confidence                     9999998854    99999999     999999987543221   1   12258889999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.95  E-value=1.7e-27  Score=181.06  Aligned_cols=204  Identities=21%  Similarity=0.331  Sum_probs=164.8

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +|.+|.+.-..++|++.. -+|++|+.|+.|++||+......  ...+...+.+|+..|.+++|++. ...+|++++.|+
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~  250 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDG  250 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCC
Confidence            477888877889999954 58999999999999999764321  24456778899999999999886 357899999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .+.|||.+....     ++......|...|.+++|+|. ++..||+|+.|++|.+||+|..     .+....+..|...|
T Consensus       251 ~L~iwD~R~~~~-----~~~~~~~ah~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL-----~~~lh~~e~H~dev  319 (422)
T KOG0264|consen  251 KLMIWDTRSNTS-----KPSHSVKAHSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNL-----NKPLHTFEGHEDEV  319 (422)
T ss_pred             eEEEEEcCCCCC-----CCcccccccCCceeEEEeCCC-CCceEEeccCCCcEEEeechhc-----ccCceeccCCCcce
Confidence            999999985321     667777889999999999996 5677999999999999999974     34566777777766


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc-------ceeEeeecCCCCCCceEEEE
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW-------LPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~-------~~~~~~~~~~~h~~~v~~v~  233 (240)
                      .          .|.|+|....    +||+++.|     +.+.|||+..-..+.       .+.+.+-.|.||...|.+++
T Consensus       320 ~----------~V~WSPh~et----vLASSg~D-----~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Dfs  380 (422)
T KOG0264|consen  320 F----------QVEWSPHNET----VLASSGTD-----RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFS  380 (422)
T ss_pred             E----------EEEeCCCCCc----eeEecccC-----CcEEEEeccccccccChhhhccCCcceeEEecCccccccccc
Confidence            6          9999999854    89999998     999999996533221       23344557889999999999


Q ss_pred             EecCC
Q 026295          234 WALNI  238 (240)
Q Consensus       234 ~sp~~  238 (240)
                      |+|+-
T Consensus       381 Wnp~e  385 (422)
T KOG0264|consen  381 WNPNE  385 (422)
T ss_pred             CCCCC
Confidence            99974

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1e-26  Score=175.34  Aligned_cols=210  Identities=18%  Similarity=0.191  Sum_probs=159.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+..|.+.|.-+.||++|++||+++.|.+.-||.+....  ..++..++.+|..+|..+.|+|+  .+++++++.|..+
T Consensus       218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--~~kl~~tlvgh~~~V~yi~wSPD--dryLlaCg~~e~~  293 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--HFKLKKTLVGHSQPVSYIMWSPD--DRYLLACGFDEVL  293 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--ceeeeeeeecccCceEEEEECCC--CCeEEecCchHhe
Confidence            4578899999999999999999999999999999987554  46778899999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      .+||..++       .+...+.. +...+.+++|.|  +|..+++|+.|+++..||+... ....|+-+..-..+...++
T Consensus       294 ~lwDv~tg-------d~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait  363 (519)
T KOG0293|consen  294 SLWDVDTG-------DLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAIT  363 (519)
T ss_pred             eeccCCcc-------hhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEc
Confidence            99999887       55555543 457889999999  9999999999999999998742 2333443332222222222


Q ss_pred             ccccccc--------------------------eeeeEEEeCCCCC----------------------------------
Q 026295          162 MFRKASC--------------------------ISASISWNPQKGE----------------------------------  181 (240)
Q Consensus       162 ~~~~~~~--------------------------~~~~v~~~p~~~~----------------------------------  181 (240)
                      +.|+...                          .+.+.+.+.++..                                  
T Consensus       364 ~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiI  443 (519)
T KOG0293|consen  364 YDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFII  443 (519)
T ss_pred             CCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEE
Confidence            2222110                          2233333333322                                  


Q ss_pred             ------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          182 ------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       182 ------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                            .+..++|+|+.|     +.|+||+..+++    +..++.   ||+..|++|+|+|..
T Consensus       444 rSCFgg~~~~fiaSGSED-----~kvyIWhr~sgk----ll~~Ls---GHs~~vNcVswNP~~  494 (519)
T KOG0293|consen  444 RSCFGGGNDKFIASGSED-----SKVYIWHRISGK----LLAVLS---GHSKTVNCVSWNPAD  494 (519)
T ss_pred             EeccCCCCcceEEecCCC-----ceEEEEEccCCc----eeEeec---CCcceeeEEecCCCC
Confidence                  455688999998     999999998865    445555   788899999999964

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=8.3e-27  Score=186.69  Aligned_cols=192  Identities=17%  Similarity=0.228  Sum_probs=164.8

Q ss_pred             chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEe----EeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295            3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNL----KTKVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      +...+|.+.|.+++++.-+ .+|+++|.|+++++|++..........+.    +...|...|++++.+|+  ..++++|+
T Consensus       405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~n--dkLiAT~S  482 (775)
T KOG0319|consen  405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPN--DKLIATGS  482 (775)
T ss_pred             hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCC--CceEEecc
Confidence            3456899999999998765 79999999999999999863211111222    33479999999999999  99999999


Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .|.+.+||++...       ....++.+|+..|+++.|+|  +.+.+++++.|++|+||.+.+      +.+..+|.+|.
T Consensus       483 qDktaKiW~le~~-------~l~~vLsGH~RGvw~V~Fs~--~dq~laT~SgD~TvKIW~is~------fSClkT~eGH~  547 (775)
T KOG0319|consen  483 QDKTAKIWDLEQL-------RLLGVLSGHTRGVWCVSFSK--NDQLLATCSGDKTVKIWSIST------FSCLKTFEGHT  547 (775)
T ss_pred             cccceeeecccCc-------eEEEEeeCCccceEEEEecc--ccceeEeccCCceEEEEEecc------ceeeeeecCcc
Confidence            9999999999866       89999999999999999999  999999999999999999998      89999999988


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..|-          .++|-.++.     .|+++++|     |.|+||++.+..+...+    .   .|.+.|++++-+|.
T Consensus       548 ~aVl----------ra~F~~~~~-----qliS~~ad-----GliKlWnikt~eC~~tl----D---~H~DrvWaL~~~~~  600 (775)
T KOG0319|consen  548 SAVL----------RASFIRNGK-----QLISAGAD-----GLIKLWNIKTNECEMTL----D---AHNDRVWALSVSPL  600 (775)
T ss_pred             ceeE----------eeeeeeCCc-----EEEeccCC-----CcEEEEeccchhhhhhh----h---hccceeEEEeecCc
Confidence            7776          888988887     79999999     99999999998877554    3   58889999999886


Q ss_pred             C
Q 026295          238 I  238 (240)
Q Consensus       238 ~  238 (240)
                      .
T Consensus       601 ~  601 (775)
T KOG0319|consen  601 L  601 (775)
T ss_pred             c
Confidence            4

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.6e-27  Score=168.83  Aligned_cols=196  Identities=16%  Similarity=0.279  Sum_probs=163.7

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ++.++|...|.+++|+.+|.+|++|+.|+++++|++...   ....-...++|.+.|-.++|.|. ..++|++++.|.+|
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~---r~~~~~~~~gh~~svdql~w~~~-~~d~~atas~dk~i   89 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD---RFRKELVYRGHTDSVDQLCWDPK-HPDLFATASGDKTI   89 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecch---hhhhhhcccCCCcchhhheeCCC-CCcceEEecCCceE
Confidence            456788899999999999999999999999999999843   22222345689999999999887 46789999999999


Q ss_pred             EEEEeeeccC----------------------------------------------------------------------
Q 026295           83 LLWEEIVEDA----------------------------------------------------------------------   92 (240)
Q Consensus        83 ~iwd~~~~~~----------------------------------------------------------------------   92 (240)
                      ++||++....                                                                      
T Consensus        90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG  169 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLG  169 (313)
T ss_pred             EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCc
Confidence            9999654311                                                                      


Q ss_pred             -----CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           93 -----QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        93 -----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                           ..++.+++..++.|...+.+|.|+|  +|++||+|+.|..+.+||+..      ..+...+..+.-+|+      
T Consensus       170 ~v~ILsypsLkpv~si~AH~snCicI~f~p--~GryfA~GsADAlvSLWD~~E------LiC~R~isRldwpVR------  235 (313)
T KOG1407|consen  170 CVEILSYPSLKPVQSIKAHPSNCICIEFDP--DGRYFATGSADALVSLWDVDE------LICERCISRLDWPVR------  235 (313)
T ss_pred             eEEEEeccccccccccccCCcceEEEEECC--CCceEeeccccceeeccChhH------hhhheeeccccCceE------
Confidence                 0144455667778989999999999  999999999999999999987      677778888888888      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                          .++|+-++.     +||+|+.|     ..|-|=++.++.+.|..        .|.++...|+|+|.-
T Consensus       236 ----TlSFS~dg~-----~lASaSED-----h~IDIA~vetGd~~~eI--------~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  236 ----TLSFSHDGR-----MLASASED-----HFIDIAEVETGDRVWEI--------PCEGPTFTVAWHPKR  284 (313)
T ss_pred             ----EEEeccCcc-----eeeccCcc-----ceEEeEecccCCeEEEe--------eccCCceeEEecCCC
Confidence                999999988     99999999     99999999999877766        366699999999964

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.94  E-value=6.2e-25  Score=167.68  Aligned_cols=188  Identities=22%  Similarity=0.315  Sum_probs=155.2

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+++..|.+.|.+++|+|++++|++++.||.|++|++.     ..+....+..|...+..+.|+|+  ++++++++.|+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~-----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~   74 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-----TGELLRTLKGHTGPVRDVAASAD--GTYLASGSSDKT   74 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEee-----CCCcEEEEecCCcceeEEEECCC--CCEEEEEcCCCe
Confidence            46788999999999999999999999999999999998     33456677788899999999998  889999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |++|++...       +.+..+..+...+.++.|+|  ++.++++++.|+.|.+||+++      .+....+..+...+.
T Consensus        75 i~i~~~~~~-------~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~i~  139 (289)
T cd00200          75 IRLWDLETG-------ECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVET------GKCLTTLRGHTDWVN  139 (289)
T ss_pred             EEEEEcCcc-------cceEEEeccCCcEEEEEEcC--CCCEEEEecCCCeEEEEECCC------cEEEEEeccCCCcEE
Confidence            999999865       56777778888999999998  788888888899999999986      455556665655555


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                                ++.|+|++.     ++++++.+     +.|++||+......    ..+.   .|...|++++|+|++
T Consensus       140 ----------~~~~~~~~~-----~l~~~~~~-----~~i~i~d~~~~~~~----~~~~---~~~~~i~~~~~~~~~  189 (289)
T cd00200         140 ----------SVAFSPDGT-----FVASSSQD-----GTIKLWDLRTGKCV----ATLT---GHTGEVNSVAFSPDG  189 (289)
T ss_pred             ----------EEEEcCcCC-----EEEEEcCC-----CcEEEEEccccccc----eeEe---cCccccceEEECCCc
Confidence                      899999865     67777657     99999999764432    2223   466699999999986

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.94  E-value=6.1e-25  Score=170.24  Aligned_cols=212  Identities=14%  Similarity=0.234  Sum_probs=154.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee---ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK---VHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +++.|...|+|++|+|||.++|+++.||.|.|||-.     +++.+..+.   +|++.|++++|+|+  +..|++++.|.
T Consensus       185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk-----tge~vg~l~~~~aHkGsIfalsWsPD--s~~~~T~SaDk  257 (603)
T KOG0318|consen  185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK-----TGEKVGELEDSDAHKGSIFALSWSPD--STQFLTVSADK  257 (603)
T ss_pred             cccccccceeeEEECCCCCeEEEecCCccEEEEcCC-----CccEEEEecCCCCccccEEEEEECCC--CceEEEecCCc
Confidence            467899999999999999999999999999999987     667777777   89999999999999  99999999999


Q ss_pred             eEEEEEeeeccC------------------------------------CCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295           81 SLLLWEEIVEDA------------------------------------QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        81 ~v~iwd~~~~~~------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  124 (240)
                      +++|||+....-                                    +.....++..+.+|...|+++..+|  ++.+|
T Consensus       258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~--d~~~i  335 (603)
T KOG0318|consen  258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP--DGKTI  335 (603)
T ss_pred             eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC--CCCEE
Confidence            999999765311                                    0011123556778999999999999  99999


Q ss_pred             EEEeCCCcEEEEEecCcccccc-----eeEEeeeeccc-c-------------------eee-----ccccc--------
Q 026295          125 VAAYSDGHVKVYELLDPLILKN-----WQLQAEFQNAI-D-------------------SVT-----MFRKA--------  166 (240)
Q Consensus       125 ~~~~~dg~v~iw~~~~~~~~~~-----~~~~~~~~~~~-~-------------------~v~-----~~~~~--------  166 (240)
                      .+|+.||.|.-|+..+......     ...+..+.... .                   ...     +.+..        
T Consensus       336 ~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~  415 (603)
T KOG0318|consen  336 YSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLS  415 (603)
T ss_pred             EeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcC
Confidence            9999999999999865422110     00111111000 0                   000     00000        


Q ss_pred             ---------------------------cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEee
Q 026295          167 ---------------------------SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL  219 (240)
Q Consensus       167 ---------------------------~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~  219 (240)
                                                 .-...+++.+|++.     .+++|+.|     +.|+||.+......  ....+
T Consensus       416 d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-----~vaVGG~D-----gkvhvysl~g~~l~--ee~~~  483 (603)
T KOG0318|consen  416 DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS-----EVAVGGQD-----GKVHVYSLSGDELK--EEAKL  483 (603)
T ss_pred             CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC-----EEEEeccc-----ceEEEEEecCCccc--ceeee
Confidence                                       00225677777776     89999999     99999999875532  11111


Q ss_pred             ecCCCCCCceEEEEEecCCC
Q 026295          220 ALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       220 ~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .   .|.++|++|++|||+.
T Consensus       484 ~---~h~a~iT~vaySpd~~  500 (603)
T KOG0318|consen  484 L---EHRAAITDVAYSPDGA  500 (603)
T ss_pred             e---cccCCceEEEECCCCc
Confidence            2   4778999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.94  E-value=5.6e-26  Score=181.96  Aligned_cols=162  Identities=21%  Similarity=0.246  Sum_probs=150.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ...|+..|+|++++|+.+++||||.|++.+||+++     ..+....+.+|+..|.++.|++.  .+.+++++.|++|+|
T Consensus       459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le-----~~~l~~vLsGH~RGvw~V~Fs~~--dq~laT~SgD~TvKI  531 (775)
T KOG0319|consen  459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE-----QLRLLGVLSGHTRGVWCVSFSKN--DQLLATCSGDKTVKI  531 (775)
T ss_pred             HHhhcccccceEecCCCceEEecccccceeeeccc-----CceEEEEeeCCccceEEEEeccc--cceeEeccCCceEEE
Confidence            45699999999999999999999999999999999     66889999999999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      |.+.+.       .++.+|.+|+..|..+.|-.  ++..|++++.||-+++|++++      .++...+..|...+.   
T Consensus       532 W~is~f-------SClkT~eGH~~aVlra~F~~--~~~qliS~~adGliKlWnikt------~eC~~tlD~H~DrvW---  593 (775)
T KOG0319|consen  532 WSISTF-------SCLKTFEGHTSAVLRASFIR--NGKQLISAGADGLIKLWNIKT------NECEMTLDAHNDRVW---  593 (775)
T ss_pred             EEeccc-------eeeeeecCccceeEeeeeee--CCcEEEeccCCCcEEEEeccc------hhhhhhhhhccceeE---
Confidence            999876       99999999999999999988  999999999999999999998      688999999999888   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                             +++-+|...     .+++|+.|     +.|.+|.=.+
T Consensus       594 -------aL~~~~~~~-----~~~tgg~D-----g~i~~wkD~T  620 (775)
T KOG0319|consen  594 -------ALSVSPLLD-----MFVTGGGD-----GRIIFWKDVT  620 (775)
T ss_pred             -------EEeecCccc-----eeEecCCC-----eEEEEeecCc
Confidence                   888888876     89999999     9999997443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=5.9e-27  Score=179.47  Aligned_cols=122  Identities=18%  Similarity=0.278  Sum_probs=111.2

Q ss_pred             hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.+|...|.++.|.| .+.+|++|+.|+.|+||++..    ...+++++.+|..+|.+++|+++  |..|++++.|+.|
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----~~~~lrtf~gH~k~Vrd~~~s~~--g~~fLS~sfD~~l  282 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----DRRCLRTFKGHRKPVRDASFNNC--GTSFLSASFDRFL  282 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEec----Ccceehhhhcchhhhhhhhcccc--CCeeeeeecceee
Confidence            4678999999999999 889999999999999999975    36899999999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCc
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~  141 (240)
                      ++||.+++       +++..|... ..+.++.|+|  ++ +.+++|+.|+.|+.||++++
T Consensus       283 KlwDtETG-------~~~~~f~~~-~~~~cvkf~p--d~~n~fl~G~sd~ki~~wDiRs~  332 (503)
T KOG0282|consen  283 KLWDTETG-------QVLSRFHLD-KVPTCVKFHP--DNQNIFLVGGSDKKIRQWDIRSG  332 (503)
T ss_pred             eeeccccc-------eEEEEEecC-CCceeeecCC--CCCcEEEEecCCCcEEEEeccch
Confidence            99999988       888888753 6678999999  66 78999999999999999875

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=9.6e-26  Score=187.34  Aligned_cols=200  Identities=20%  Similarity=0.317  Sum_probs=164.5

Q ss_pred             ccc-ccceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCC-------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE
Q 026295            6 ATL-DKGTTSSSWNYCGQRLATGS--TDGTLSIFDSPDPS-------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC   75 (240)
Q Consensus         6 ~~h-~~~v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   75 (240)
                      -.| +..|.++..+|+|.++|||+  .|+.++||+.+.-.       ..-.+.+.++..|.+.|.|+.|+|+  |++||+
T Consensus         9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d--G~~lAs   86 (942)
T KOG0973|consen    9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD--GSYLAS   86 (942)
T ss_pred             cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC--CCeEee
Confidence            344 45799999999999999999  99999999975311       0012445667789999999999999  999999


Q ss_pred             EecCCeEEEEEeeec-----------cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc
Q 026295           76 ICSDGSLLLWEEIVE-----------DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL  144 (240)
Q Consensus        76 ~~~d~~v~iwd~~~~-----------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~  144 (240)
                      |+.|+.|.||.....           ......|+....+.+|...|..++|+|  ++.+|++++.|++|.+|+.++    
T Consensus        87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp--~~~~lvS~s~DnsViiwn~~t----  160 (942)
T KOG0973|consen   87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP--DDSLLVSVSLDNSVIIWNAKT----  160 (942)
T ss_pred             ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC--CccEEEEecccceEEEEcccc----
Confidence            999999999998731           112467999999999999999999999  999999999999999999998    


Q ss_pred             cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC-
Q 026295          145 KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE-  223 (240)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-  223 (240)
                        ++.+..+.+|...|.          .+.|+|.+.     +||+-+.|     ++|+||+..+    |.....+..+. 
T Consensus       161 --F~~~~vl~~H~s~VK----------Gvs~DP~Gk-----y~ASqsdD-----rtikvwrt~d----w~i~k~It~pf~  214 (942)
T KOG0973|consen  161 --FELLKVLRGHQSLVK----------GVSWDPIGK-----YFASQSDD-----RTLKVWRTSD----WGIEKSITKPFE  214 (942)
T ss_pred             --ceeeeeeeccccccc----------ceEECCccC-----eeeeecCC-----ceEEEEEccc----ceeeEeeccchh
Confidence              788899999998888          899999998     99999998     9999999655    33333332222 


Q ss_pred             --CCCCceEEEEEecCCC
Q 026295          224 --DRSDEVYAVAWALNIG  239 (240)
Q Consensus       224 --~h~~~v~~v~~sp~~~  239 (240)
                        .-+..++-++|||||.
T Consensus       215 ~~~~~T~f~RlSWSPDG~  232 (942)
T KOG0973|consen  215 ESPLTTFFLRLSWSPDGH  232 (942)
T ss_pred             hCCCcceeeecccCCCcC
Confidence              2334689999999984

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.5e-25  Score=181.78  Aligned_cols=204  Identities=15%  Similarity=0.207  Sum_probs=160.6

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .++.+|+++|+.++|+|.+.++++|+.|-.|+||+..     +.+++.++.+|-..|..+.|++.  -..++|++.|-+|
T Consensus        45 ~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-----~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTI  117 (1202)
T KOG0292|consen   45 DRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-----TRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTI  117 (1202)
T ss_pred             hhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-----cceehhhhccccceeEEeeccCC--CceEEEccCCCeE
Confidence            3577899999999999999999999999999999999     77899999999999999999888  7889999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc--ceeEEeeeecc----
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK--NWQLQAEFQNA----  156 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~----  156 (240)
                      +||+-+++       +++..+.+|...|.|..|+|  ....+++++.|.+|++||+..-....  .......+..+    
T Consensus       118 rIWNwqsr-------~~iavltGHnHYVMcAqFhp--tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~  188 (1202)
T KOG0292|consen  118 RIWNWQSR-------KCIAVLTGHNHYVMCAQFHP--TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNS  188 (1202)
T ss_pred             EEEeccCC-------ceEEEEecCceEEEeeccCC--ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccch
Confidence            99999888       99999999999999999999  77889999999999999986311000  00000001111    


Q ss_pred             -----cceeec--cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          157 -----IDSVTM--FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       157 -----~~~v~~--~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                           ...|-.  ...|-=.||-++|+|...     +|++|+.|     +.|++|.+...+ -|.    +..-.||.+.|
T Consensus       189 dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-----liVSG~DD-----RqVKlWrmnetK-aWE----vDtcrgH~nnV  253 (1202)
T KOG0292|consen  189 DLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-----LIVSGADD-----RQVKLWRMNETK-AWE----VDTCRGHYNNV  253 (1202)
T ss_pred             hhcCCcCeeeeeeecccccccceEEecCCcc-----eEEecCCc-----ceeeEEEecccc-cee----ehhhhcccCCc
Confidence                 111100  011122456899999987     88888888     999999987644 232    24455799999


Q ss_pred             EEEEEecC
Q 026295          230 YAVAWALN  237 (240)
Q Consensus       230 ~~v~~sp~  237 (240)
                      .++-|+|.
T Consensus       254 ssvlfhp~  261 (1202)
T KOG0292|consen  254 SSVLFHPH  261 (1202)
T ss_pred             ceEEecCc
Confidence            99999994

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=172.73  Aligned_cols=191  Identities=17%  Similarity=0.175  Sum_probs=154.0

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +++.-+.+.|.++.|-.||++||+|+..|.|+|||..     +...+..+.+|+.+|..+.|+|. .+..|++|+.|+.+
T Consensus        62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-----~r~iLR~~~ah~apv~~~~f~~~-d~t~l~s~sDd~v~  135 (487)
T KOG0310|consen   62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK-----SRVILRQLYAHQAPVHVTKFSPQ-DNTMLVSGSDDKVV  135 (487)
T ss_pred             hhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc-----cHHHHHHHhhccCceeEEEeccc-CCeEEEecCCCceE
Confidence            3466678899999999999999999999999999966     44567888999999999999887 45678888889999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||+.+.       .....+.+|+..|++.+|+|. ++.++++|+.||+|++||++..     ...+.++ .|..+|  
T Consensus       136 k~~d~s~a-------~v~~~l~~htDYVR~g~~~~~-~~hivvtGsYDg~vrl~DtR~~-----~~~v~el-nhg~pV--  199 (487)
T KOG0310|consen  136 KYWDLSTA-------YVQAELSGHTDYVRCGDISPA-NDHIVVTGSYDGKVRLWDTRSL-----TSRVVEL-NHGCPV--  199 (487)
T ss_pred             EEEEcCCc-------EEEEEecCCcceeEeeccccC-CCeEEEecCCCceEEEEEeccC-----CceeEEe-cCCCce--
Confidence            99999875       556688899999999999984 5568999999999999999972     1333343 333344  


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                              ..+.+-|.+.     ++++++.      +.|+|||+.++.+....      ...|...|+|+.+..++.|
T Consensus       200 --------e~vl~lpsgs-----~iasAgG------n~vkVWDl~~G~qll~~------~~~H~KtVTcL~l~s~~~r  252 (487)
T KOG0310|consen  200 --------ESVLALPSGS-----LIASAGG------NSVKVWDLTTGGQLLTS------MFNHNKTVTCLRLASDSTR  252 (487)
T ss_pred             --------eeEEEcCCCC-----EEEEcCC------CeEEEEEecCCceehhh------hhcccceEEEEEeecCCce
Confidence                    4999999987     8888887      79999999876544222      1137779999999987654

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=2.4e-24  Score=176.13  Aligned_cols=178  Identities=14%  Similarity=0.172  Sum_probs=133.0

Q ss_pred             hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEEEcCCCCCCE-EEEEec
Q 026295            4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVVWVPPEFGDA-VACICS   78 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~-l~s~~~   78 (240)
                      .+.+|.+.|.+++|+|+ +.+||+|+.|++|+||++......   ...++..+.+|...|.+++|+|.  +.. +++++.
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~--g~~iLaSgS~  146 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM--NYYIMCSSGF  146 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC--CCeEEEEEeC
Confidence            36789999999999996 789999999999999999743110   01244567889999999999998  764 578999


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      |+.|++||++.+       +.+..+. +...|.+++|+|  +|.+|++++.|++|+|||+++      .+.+..+..|..
T Consensus       147 DgtIrIWDl~tg-------~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rs------g~~i~tl~gH~g  210 (568)
T PTZ00420        147 DSFVNIWDIENE-------KRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRK------QEIASSFHIHDG  210 (568)
T ss_pred             CCeEEEEECCCC-------cEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCC------CcEEEEEecccC
Confidence            999999999876       5555554 457899999999  999999999999999999997      566667777755


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .+..     ..+....|++++.     +|++++.++ ...+.|+|||++...
T Consensus       211 ~~~s-----~~v~~~~fs~d~~-----~IlTtG~d~-~~~R~VkLWDlr~~~  251 (568)
T PTZ00420        211 GKNT-----KNIWIDGLGGDDN-----YILSTGFSK-NNMREMKLWDLKNTT  251 (568)
T ss_pred             Ccee-----EEEEeeeEcCCCC-----EEEEEEcCC-CCccEEEEEECCCCC
Confidence            4320     0011223556665     777777651 001379999998643

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.94  E-value=7.3e-25  Score=163.64  Aligned_cols=193  Identities=19%  Similarity=0.322  Sum_probs=158.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--------------------CCcEEEEeEeeecCccEEEEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS--------------------SSSFTCNLKTKVHAGAILKVVW   64 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~--------------------~~~~~~~~~~~~h~~~v~~~~~   64 (240)
                      .++|...|-+++..++|.++++|+.|.+|+||+.....                    .++..++.++.+|.++|.++.|
T Consensus       189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w  268 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW  268 (423)
T ss_pred             hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence            45899999999999999999999999999999932110                    1245677888999999999999


Q ss_pred             cCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc
Q 026295           65 VPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL  144 (240)
Q Consensus        65 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~  144 (240)
                      ++   ...+.+++.|.+|+.||+..+       .....+... ....++..+|  ...+|++|+.|..+++||.+++.  
T Consensus       269 ~d---~~v~yS~SwDHTIk~WDletg-------~~~~~~~~~-ksl~~i~~~~--~~~Ll~~gssdr~irl~DPR~~~--  333 (423)
T KOG0313|consen  269 SD---ATVIYSVSWDHTIKVWDLETG-------GLKSTLTTN-KSLNCISYSP--LSKLLASGSSDRHIRLWDPRTGD--  333 (423)
T ss_pred             cC---CCceEeecccceEEEEEeecc-------cceeeeecC-cceeEeeccc--ccceeeecCCCCceeecCCCCCC--
Confidence            66   467889999999999999887       566666543 6788999999  89999999999999999999852  


Q ss_pred             cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCC
Q 026295          145 KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPED  224 (240)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~  224 (240)
                       .-...+.+.+|...|.          ++.|+|....    .|++|+.|     +++++||+++....   ...+.   +
T Consensus       334 -gs~v~~s~~gH~nwVs----------svkwsp~~~~----~~~S~S~D-----~t~klWDvRS~k~p---lydI~---~  387 (423)
T KOG0313|consen  334 -GSVVSQSLIGHKNWVS----------SVKWSPTNEF----QLVSGSYD-----NTVKLWDVRSTKAP---LYDIA---G  387 (423)
T ss_pred             -CceeEEeeecchhhhh----------heecCCCCce----EEEEEecC-----CeEEEEEeccCCCc---ceeec---c
Confidence             2345667889998888          9999999853    88999999     99999999986522   23333   5


Q ss_pred             CCCceEEEEEecCC
Q 026295          225 RSDEVYAVAWALNI  238 (240)
Q Consensus       225 h~~~v~~v~~sp~~  238 (240)
                      |.+.|.++.|+.-+
T Consensus       388 h~DKvl~vdW~~~~  401 (423)
T KOG0313|consen  388 HNDKVLSVDWNEGG  401 (423)
T ss_pred             CCceEEEEeccCCc
Confidence            77899999998753

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.94  E-value=2.8e-25  Score=161.31  Aligned_cols=201  Identities=17%  Similarity=0.198  Sum_probs=154.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v   82 (240)
                      ++..|.++|+.+.|.++++.|++++.|.+|+.||.+     +++.+..+++|..-|+.+.  |...| .++.+++.|+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-----tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~  157 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-----TGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTL  157 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecc-----cceeeehhccccceeeecC--ccccCCeEEEecCCCceE
Confidence            467899999999999999999999999999999999     8899999999999888887  33224 456678889999


Q ss_pred             EEEEeeeccCC-----------------------------CcccE-----EEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295           83 LLWEEIVEDAQ-----------------------------PLQWK-----LCKSFESTSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        83 ~iwd~~~~~~~-----------------------------~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      ++||++.++..                             -..|.     .+..+.+|...|+.+..+|  +|.++.+-+
T Consensus       158 kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~--~gs~llsns  235 (338)
T KOG0265|consen  158 KLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR--YGSFLLSNS  235 (338)
T ss_pred             EEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc--CCCcccccc
Confidence            99998843220                             12233     3566778999999999999  999999999


Q ss_pred             CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          129 SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       129 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .|.++++||.+.-.+.  ..++..+.++   +..+++.+-   ..+|+|++.     .+..|+.|     +.+++||...
T Consensus       236 Md~tvrvwd~rp~~p~--~R~v~if~g~---~hnfeknlL---~cswsp~~~-----~i~ags~d-----r~vyvwd~~~  297 (338)
T KOG0265|consen  236 MDNTVRVWDVRPFAPS--QRCVKIFQGH---IHNFEKNLL---KCSWSPNGT-----KITAGSAD-----RFVYVWDTTS  297 (338)
T ss_pred             ccceEEEEEecccCCC--CceEEEeecc---hhhhhhhcc---eeeccCCCC-----cccccccc-----ceEEEeeccc
Confidence            9999999999852211  2234444443   334444444   678999998     78888888     9999999765


Q ss_pred             CCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          209 AHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ..    ....++   ||.+.|++++|+|.-
T Consensus       298 r~----~lyklp---Gh~gsvn~~~Fhp~e  320 (338)
T KOG0265|consen  298 RR----ILYKLP---GHYGSVNEVDFHPTE  320 (338)
T ss_pred             cc----EEEEcC---CcceeEEEeeecCCC
Confidence            33    334445   566699999999963

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.3e-25  Score=183.50  Aligned_cols=196  Identities=13%  Similarity=0.137  Sum_probs=169.5

Q ss_pred             CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |-+++..-..+|..++|+|....+.++--.|.|++||.+     -+.++..|..|+++|..+.|+|.  ..+|+||+.|-
T Consensus         1 mltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYR-----M~tli~rFdeHdGpVRgv~FH~~--qplFVSGGDDy   73 (1202)
T KOG0292|consen    1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYR-----MGTLIDRFDEHDGPVRGVDFHPT--QPLFVSGGDDY   73 (1202)
T ss_pred             CcchhhcccccccceecCCCCCEEEEeecCceeeeehhh-----hhhHHhhhhccCCccceeeecCC--CCeEEecCCcc
Confidence            566777778899999999999999999999999999998     56789999999999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|++|++...       +++.++.+|-..|+.+.|++  .-.++++++.|.+|+||+..+      ..++..+.+|...|
T Consensus        74 kIkVWnYk~r-------rclftL~GHlDYVRt~~FHh--eyPWIlSASDDQTIrIWNwqs------r~~iavltGHnHYV  138 (1202)
T KOG0292|consen   74 KIKVWNYKTR-------RCLFTLLGHLDYVRTVFFHH--EYPWILSASDDQTIRIWNWQS------RKCIAVLTGHNHYV  138 (1202)
T ss_pred             EEEEEecccc-------eehhhhccccceeEEeeccC--CCceEEEccCCCeEEEEeccC------CceEEEEecCceEE
Confidence            9999999888       99999999999999999998  888999999999999999988      78999999998777


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC--------------------cc--eeEe
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR--------------------WL--PVAE  218 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~--------------------~~--~~~~  218 (240)
                      -          |..|+|...     ++++|+-|     .+|||||...-..+                    +.  -...
T Consensus       139 M----------cAqFhptED-----lIVSaSLD-----QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVV  198 (1202)
T KOG0292|consen  139 M----------CAQFHPTED-----LIVSASLD-----QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVV  198 (1202)
T ss_pred             E----------eeccCCccc-----eEEEeccc-----ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeee
Confidence            6          889999877     89999999     99999998531100                    00  0011


Q ss_pred             eecCCCCCCceEEEEEecCC
Q 026295          219 LALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       219 ~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ....+||.-.|+-++|+|..
T Consensus       199 K~VLEGHDRGVNwaAfhpTl  218 (1202)
T KOG0292|consen  199 KHVLEGHDRGVNWAAFHPTL  218 (1202)
T ss_pred             eeeecccccccceEEecCCc
Confidence            12345788899999999953

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=7.5e-27  Score=186.69  Aligned_cols=185  Identities=18%  Similarity=0.281  Sum_probs=163.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|+..|.++.|+++..+|++|+.+|+|++||+.     +.+.++++.+|...+..+.|+|-  +.++++++.|+.+++
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-----eAk~vrtLtgh~~~~~sv~f~P~--~~~~a~gStdtd~~i  138 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-----EAKIVRTLTGHLLNITSVDFHPY--GEFFASGSTDTDLKI  138 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehh-----hhhhhhhhhccccCcceeeeccc--eEEecccccccccee
Confidence            67899999999999999999999999999999999     66788899999999999999998  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||.+..       -|...+.+|...|..+.|+|  +|.+++.++.|.+++|||+..      +++..+|..|...+.   
T Consensus       139 wD~Rk~-------Gc~~~~~s~~~vv~~l~lsP--~Gr~v~~g~ed~tvki~d~~a------gk~~~ef~~~e~~v~---  200 (825)
T KOG0267|consen  139 WDIRKK-------GCSHTYKSHTRVVDVLRLSP--DGRWVASGGEDNTVKIWDLTA------GKLSKEFKSHEGKVQ---  200 (825)
T ss_pred             hhhhcc-------CceeeecCCcceeEEEeecC--CCceeeccCCcceeeeecccc------ccccccccccccccc---
Confidence            999865       68899999999999999999  999999999999999999987      788888888877776   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                             ++.|+|...     +++.|+.|     ++|++||+++-.    ......   .....|.+++|+|++
T Consensus       201 -------sle~hp~e~-----Lla~Gs~d-----~tv~f~dletfe----~I~s~~---~~~~~v~~~~fn~~~  250 (825)
T KOG0267|consen  201 -------SLEFHPLEV-----LLAPGSSD-----RTVRFWDLETFE----VISSGK---PETDGVRSLAFNPDG  250 (825)
T ss_pred             -------ccccCchhh-----hhccCCCC-----ceeeeeccceeE----EeeccC---CccCCceeeeecCCc
Confidence                   889999987     89999999     999999998632    111111   234489999999987

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=6.6e-24  Score=183.75  Aligned_cols=200  Identities=17%  Similarity=0.128  Sum_probs=151.9

Q ss_pred             hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+..|.+.|++++|+| ++.+|++|+.|++|++||+.     +...+..+..+ ..|.++.|.++ .+.+|++|+.|+.|
T Consensus       570 ~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-----~~~~~~~~~~~-~~v~~v~~~~~-~g~~latgs~dg~I  642 (793)
T PLN00181        570 EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-----QGVSIGTIKTK-ANICCVQFPSE-SGRSLAFGSADHKV  642 (793)
T ss_pred             EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-----CCcEEEEEecC-CCeEEEEEeCC-CCCEEEEEeCCCeE
Confidence            4667999999999997 78999999999999999998     44566667654 67999999543 28999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||++...      .++..+.+|...|..+.|.   ++.+|++++.|++|++||++.......+.++..+.+|...+. 
T Consensus       643 ~iwD~~~~~------~~~~~~~~h~~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~-  712 (793)
T PLN00181        643 YYYDLRNPK------LPLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKN-  712 (793)
T ss_pred             EEEECCCCC------ccceEecCCCCCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCee-
Confidence            999997641      2566777899999999995   466799999999999999975322222345566666655554 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE----eee--cCCCCCCceEEEEEec
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA----ELA--LPEDRSDEVYAVAWAL  236 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~----~~~--~~~~h~~~v~~v~~sp  236 (240)
                               .++|+|++.     +|++|+.|     +.|+||+.......+....    .+.  ....|...|.+++|+|
T Consensus       713 ---------~v~~s~~~~-----~lasgs~D-----~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        713 ---------FVGLSVSDG-----YIATGSET-----NEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG  773 (793)
T ss_pred             ---------EEEEcCCCC-----EEEEEeCC-----CEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence                     899999987     99999999     9999999765432211100    000  1124666899999999


Q ss_pred             CCC
Q 026295          237 NIG  239 (240)
Q Consensus       237 ~~~  239 (240)
                      ++.
T Consensus       774 ~~~  776 (793)
T PLN00181        774 QSS  776 (793)
T ss_pred             CCC
Confidence            874

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=4.1e-24  Score=153.10  Aligned_cols=193  Identities=16%  Similarity=0.196  Sum_probs=157.6

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .|++|+.+++-+.++.+|.+|.+|+.|.++.||-..     .++.+.++.+|++.|+++....+  ...+++|+.|.+++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~-----nGerlGty~GHtGavW~~Did~~--s~~liTGSAD~t~k   77 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSL-----NGERLGTYDGHTGAVWCCDIDWD--SKHLITGSADQTAK   77 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEec-----CCceeeeecCCCceEEEEEecCC--cceeeeccccceeE
Confidence            378999999999999999999999999999999887     56789999999999999999887  89999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-----CCcEEEEEecCccc-ccceeEEeeeeccc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-----DGHVKVYELLDPLI-LKNWQLQAEFQNAI  157 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~~-~~~~~~~~~~~~~~  157 (240)
                      +||+.++       +.+..++. ...|..+.|++  .|.+++....     .+.|.++|++.+.. ...-++...+..+.
T Consensus        78 LWDv~tG-------k~la~~k~-~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~  147 (327)
T KOG0643|consen   78 LWDVETG-------KQLATWKT-NSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD  147 (327)
T ss_pred             EEEcCCC-------cEEEEeec-CCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc
Confidence            9999988       88888875 47899999998  8887766653     36799999986432 22234455555555


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..+.          .+-|.|.+.     .|++|..+     |.|.+||++++...   +.   ..+.|+..|++++|+||
T Consensus       148 skit----------~a~Wg~l~~-----~ii~Ghe~-----G~is~~da~~g~~~---v~---s~~~h~~~Ind~q~s~d  201 (327)
T KOG0643|consen  148 SKIT----------SALWGPLGE-----TIIAGHED-----GSISIYDARTGKEL---VD---SDEEHSSKINDLQFSRD  201 (327)
T ss_pred             ccee----------eeeecccCC-----EEEEecCC-----CcEEEEEcccCcee---ee---chhhhccccccccccCC
Confidence            4444          788999988     89999888     99999999987522   22   22348889999999998


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      ..
T Consensus       202 ~T  203 (327)
T KOG0643|consen  202 RT  203 (327)
T ss_pred             cc
Confidence            63

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=151.90  Aligned_cols=189  Identities=14%  Similarity=0.237  Sum_probs=144.5

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ++..+|...|..++.+.|...|++|+.|+.|.+||+.     +++.++.+.+|.+.|+.++|+..  ...+++|+.|.++
T Consensus        53 ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-----TGkv~Rr~rgH~aqVNtV~fNee--sSVv~SgsfD~s~  125 (307)
T KOG0316|consen   53 KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-----TGKVDRRFRGHLAQVNTVRFNEE--SSVVASGSFDSSV  125 (307)
T ss_pred             eeecCCCceeeeccccccccccccCCCCceEEEEEcc-----cCeeeeecccccceeeEEEecCc--ceEEEecccccee
Confidence            4567899999999999999999999999999999999     88999999999999999999988  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||-+...     +++++.+......|.++..    .+..+++|+.||+++.||++.      +.+....-++  +|  
T Consensus       126 r~wDCRS~s-----~ePiQildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~------G~l~sDy~g~--pi--  186 (307)
T KOG0316|consen  126 RLWDCRSRS-----FEPIQILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRK------GTLSSDYFGH--PI--  186 (307)
T ss_pred             EEEEcccCC-----CCccchhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeec------ceeehhhcCC--cc--
Confidence            999998753     3788888877788888877    455688888888888888886      3332222121  11  


Q ss_pred             cccccceeeeEEEeCCCCC---------------------------------------CCCceEEEEecCCCCCCCeEEE
Q 026295          163 FRKASCISASISWNPQKGE---------------------------------------NQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~---------------------------------------~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                              ++++|++++.-                                       .....++.|+.|     |.|++
T Consensus       187 --------t~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSED-----G~Vy~  253 (307)
T KOG0316|consen  187 --------TSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSED-----GKVYF  253 (307)
T ss_pred             --------eeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCC-----ceEEE
Confidence                    24444444432                                       223367777777     99999


Q ss_pred             EEeecCCCCcceeEeeecCCCCCCc-eEEEEEecC
Q 026295          204 WEFDEAHNRWLPVAELALPEDRSDE-VYAVAWALN  237 (240)
Q Consensus       204 w~~~~~~~~~~~~~~~~~~~~h~~~-v~~v~~sp~  237 (240)
                      ||+......    ..++   .|+.. |.+++++|.
T Consensus       254 wdLvd~~~~----sk~~---~~~~v~v~dl~~hp~  281 (307)
T KOG0316|consen  254 WDLVDETQI----SKLS---VVSTVIVTDLSCHPT  281 (307)
T ss_pred             EEeccceee----eeec---cCCceeEEeeecccC
Confidence            999876532    2222   23335 799999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.93  E-value=5.2e-24  Score=171.36  Aligned_cols=183  Identities=20%  Similarity=0.327  Sum_probs=154.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            9 DKGTTSSSWNYCGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      +..|..++|+..|..||.|+.. |.+-||+..     ....+...++|-..+.+++++|+  |+++++|+.||.|+|||.
T Consensus       307 ~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-----sEsYVlKQQgH~~~i~~l~YSpD--gq~iaTG~eDgKVKvWn~  379 (893)
T KOG0291|consen  307 DQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-----SESYVLKQQGHSDRITSLAYSPD--GQLIATGAEDGKVKVWNT  379 (893)
T ss_pred             cceeeEEEecccCCEEEEcCCccceEEEEEee-----ccceeeeccccccceeeEEECCC--CcEEEeccCCCcEEEEec
Confidence            3578899999999999998765 799999998     44677788899999999999999  999999999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc-eeeccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID-SVTMFRKA  166 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~  166 (240)
                      +.+       -|+.+|..|+..|+.++|+.  .++.+++.+.||+|+.||+..      +....++..+.. ...     
T Consensus       380 ~Sg-------fC~vTFteHts~Vt~v~f~~--~g~~llssSLDGtVRAwDlkR------YrNfRTft~P~p~Qfs-----  439 (893)
T KOG0291|consen  380 QSG-------FCFVTFTEHTSGVTAVQFTA--RGNVLLSSSLDGTVRAWDLKR------YRNFRTFTSPEPIQFS-----  439 (893)
T ss_pred             cCc-------eEEEEeccCCCceEEEEEEe--cCCEEEEeecCCeEEeeeecc------cceeeeecCCCceeee-----
Confidence            887       89999999999999999988  999999999999999999987      566666654322 223     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                           +++-+|.+.     ++..|+.|.    =.|++|++++++    +...|.   ||+++|.+++|+|++.
T Consensus       440 -----cvavD~sGe-----lV~AG~~d~----F~IfvWS~qTGq----llDiLs---GHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  440 -----CVAVDPSGE-----LVCAGAQDS----FEIFVWSVQTGQ----LLDILS---GHEGPVSGLSFSPDGS  491 (893)
T ss_pred             -----EEEEcCCCC-----EEEeeccce----EEEEEEEeecCe----eeehhc---CCCCcceeeEEccccC
Confidence                 888899987     666666663    489999999986    333334   6777999999999874

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.2e-25  Score=181.04  Aligned_cols=185  Identities=18%  Similarity=0.325  Sum_probs=151.9

Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           12 TTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        12 v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      +..+.|+. +.++|||++..|.|.+||+....  .-+++..|..|+..++.+.|++. -..+|++|++||.|++||++..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk~l~~f~EH~Rs~~~ldfh~t-ep~iliSGSQDg~vK~~DlR~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNKLLTVFNEHERSANKLDFHST-EPNILISGSQDGTVKCWDLRSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccc--cchhhhHhhhhccceeeeeeccC-CccEEEecCCCceEEEEeeecc
Confidence            44567764 56899999999999999998632  23556678899999999999876 3689999999999999999987


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                             +...++.+....|+.|+|+|. .+.+|+++...|.+++||+|.+     -.+...+..|.+++.         
T Consensus       167 -------~S~~t~~~nSESiRDV~fsp~-~~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~---------  224 (839)
T KOG0269|consen  167 -------KSKSTFRSNSESIRDVKFSPG-YGNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVL---------  224 (839)
T ss_pred             -------cccccccccchhhhceeeccC-CCceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceE---------
Confidence                   667778888899999999996 4677999999999999999986     455667788988887         


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                       ++.|+|++.     +||||+.|     +.|+||+..+....  ....+.    -..+|..|.|.|.-
T Consensus       225 -c~nwhPnr~-----~lATGGRD-----K~vkiWd~t~~~~~--~~~tIn----Tiapv~rVkWRP~~  275 (839)
T KOG0269|consen  225 -CLNWHPNRE-----WLATGGRD-----KMVKIWDMTDSRAK--PKHTIN----TIAPVGRVKWRPAR  275 (839)
T ss_pred             -EEeecCCCc-----eeeecCCC-----ccEEEEeccCCCcc--ceeEEe----ecceeeeeeeccCc
Confidence             999999887     99999999     99999999865432  222332    33489999999974

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.93  E-value=3.8e-26  Score=167.97  Aligned_cols=169  Identities=15%  Similarity=0.246  Sum_probs=144.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ...+.|..|+|||++|++|+.||.|.+|+.....-.   ..+.-..+.-++.+|.++.|+.+  ..++++|+.||.|++|
T Consensus       213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD--sEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD--SEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc--HHHhhccCcCCcEEEE
Confidence            456889999999999999999999999998732100   11122234457889999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           86 EEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      .+.++       .+++.|. .|+..|+++.|+.  ++..+++++.|.++++--+.+      +++..++.+|...+.   
T Consensus       291 ri~tG-------~ClRrFdrAHtkGvt~l~FSr--D~SqiLS~sfD~tvRiHGlKS------GK~LKEfrGHsSyvn---  352 (508)
T KOG0275|consen  291 RIETG-------QCLRRFDRAHTKGVTCLSFSR--DNSQILSASFDQTVRIHGLKS------GKCLKEFRGHSSYVN---  352 (508)
T ss_pred             EEecc-------hHHHHhhhhhccCeeEEEEcc--CcchhhcccccceEEEecccc------chhHHHhcCcccccc---
Confidence            99988       8999987 7999999999988  888899999999999998887      788888888877766   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL  214 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~  214 (240)
                             ...|.+++.     .++++++|     |+|++|+..+.++..+
T Consensus       353 -------~a~ft~dG~-----~iisaSsD-----gtvkvW~~KtteC~~T  385 (508)
T KOG0275|consen  353 -------EATFTDDGH-----HIISASSD-----GTVKVWHGKTTECLST  385 (508)
T ss_pred             -------ceEEcCCCC-----eEEEecCC-----ccEEEecCcchhhhhh
Confidence                   899999998     89999999     9999999988776543

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.93  E-value=3.2e-24  Score=152.28  Aligned_cols=191  Identities=12%  Similarity=0.167  Sum_probs=151.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ++.-++.|+.+...|+++.||+++. ..||+||+...   ...++.++.+|+..|..+.|..+  |+.+++|+.||+++|
T Consensus        36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~---np~Pv~t~e~h~kNVtaVgF~~d--grWMyTgseDgt~kI  109 (311)
T KOG0315|consen   36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSN---NPNPVATFEGHTKNVTAVGFQCD--GRWMYTGSEDGTVKI  109 (311)
T ss_pred             EecCccceeeEEEcCCcchhhhccC-CeeEEEEccCC---CCCceeEEeccCCceEEEEEeec--CeEEEecCCCceEEE
Confidence            4445668999999999999999987 68999999854   33478999999999999999888  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec-ccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN-AIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~  163 (240)
                      ||++..       .+.+.++ +..+|+++..+|  +...|+++..+|.|++||+...      .+..++-. ....++  
T Consensus       110 WdlR~~-------~~qR~~~-~~spVn~vvlhp--nQteLis~dqsg~irvWDl~~~------~c~~~liPe~~~~i~--  171 (311)
T KOG0315|consen  110 WDLRSL-------SCQRNYQ-HNSPVNTVVLHP--NQTELISGDQSGNIRVWDLGEN------SCTHELIPEDDTSIQ--  171 (311)
T ss_pred             EeccCc-------ccchhcc-CCCCcceEEecC--CcceEEeecCCCcEEEEEccCC------ccccccCCCCCccee--
Confidence            999875       5555555 459999999999  8888999999999999999873      23333222 223344  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                              ++...|++.     +|+.+..-     |..++|++-+.. ....+.++.....|+..+...-+|||+
T Consensus       172 --------sl~v~~dgs-----ml~a~nnk-----G~cyvW~l~~~~-~~s~l~P~~k~~ah~~~il~C~lSPd~  227 (311)
T KOG0315|consen  172 --------SLTVMPDGS-----MLAAANNK-----GNCYVWRLLNHQ-TASELEPVHKFQAHNGHILRCLLSPDV  227 (311)
T ss_pred             --------eEEEcCCCc-----EEEEecCC-----ccEEEEEccCCC-ccccceEhhheecccceEEEEEECCCC
Confidence                    888999997     77777776     999999997733 223334444444677789999999997

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.2e-23  Score=170.88  Aligned_cols=189  Identities=9%  Similarity=0.095  Sum_probs=141.1

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.+|...|.+++|+|++ ++|++|+.|++|+|||+.     +.+.+..+.+|...|.+++|+|+  +.+|++++.|+.|
T Consensus       120 ~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-----tg~~~~~l~~h~~~V~sla~spd--G~lLatgs~Dg~I  192 (493)
T PTZ00421        120 HLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-----RGKAVEVIKCHSDQITSLEWNLD--GSLLCTTSKDKKL  192 (493)
T ss_pred             EecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-----CCeEEEEEcCCCCceEEEEEECC--CCEEEEecCCCEE
Confidence            467899999999999986 799999999999999998     55677888899999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeecccc-EEeEEEeecCCCcEEEEEe----CCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQ-VLDVQFGVSSTSLKLVAAY----SDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      ++||++.+       +.+..+..|... +..+.|.+  ++..+++++    .|+.|++||++...     ........+.
T Consensus       193 rIwD~rsg-------~~v~tl~~H~~~~~~~~~w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~-----~p~~~~~~d~  258 (493)
T PTZ00421        193 NIIDPRDG-------TIVSSVEAHASAKSQRCLWAK--RKDLIITLGCSKSQQRQIMLWDTRKMA-----SPYSTVDLDQ  258 (493)
T ss_pred             EEEECCCC-------cEEEEEecCCCCcceEEEEcC--CCCeEEEEecCCCCCCeEEEEeCCCCC-----CceeEeccCC
Confidence            99999876       677777777654 34677887  666666554    47899999998632     1121111111


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      .         +.+....|+|++.     +|++|+. |     +.|++|++.++....  ..+.    .+..++..++|.|
T Consensus       259 ~---------~~~~~~~~d~d~~-----~L~lggkgD-----g~Iriwdl~~~~~~~--~~~~----~s~~~~~g~~~~p  313 (493)
T PTZ00421        259 S---------SALFIPFFDEDTN-----LLYIGSKGE-----GNIRCFELMNERLTF--CSSY----SSVEPHKGLCMMP  313 (493)
T ss_pred             C---------CceEEEEEcCCCC-----EEEEEEeCC-----CeEEEEEeeCCceEE--Eeec----cCCCCCcceEecc
Confidence            1         1112456888887     7888775 6     999999998764221  1111    2455788888888


Q ss_pred             CC
Q 026295          237 NI  238 (240)
Q Consensus       237 ~~  238 (240)
                      .-
T Consensus       314 k~  315 (493)
T PTZ00421        314 KW  315 (493)
T ss_pred             cc
Confidence            53

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.93  E-value=1.5e-25  Score=166.07  Aligned_cols=187  Identities=14%  Similarity=0.254  Sum_probs=127.9

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC---------------
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP---------------   67 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------------   67 (240)
                      ++|.+|.+.|.|+.|.  .+.+++|+.|.+|+|||.+     +++++.++-.|...|..+.|+..               
T Consensus       231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~-----tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWd  303 (499)
T KOG0281|consen  231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN-----TGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWD  303 (499)
T ss_pred             HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc-----CCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEe
Confidence            5688999999988864  5699999999999999998     55666666666666666655321               


Q ss_pred             ------------------------CCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE
Q 026295           68 ------------------------EFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK  123 (240)
Q Consensus        68 ------------------------~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  123 (240)
                                              -+.+++++++.|.+|++|+..+.       +.++++.+|...|-++.+    .+++
T Consensus       304 m~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~-------efvRtl~gHkRGIAClQY----r~rl  372 (499)
T KOG0281|consen  304 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTC-------EFVRTLNGHKRGIACLQY----RDRL  372 (499)
T ss_pred             ccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccce-------eeehhhhcccccceehhc----cCeE
Confidence                                    00234555555555555555444       566666667667766665    6667


Q ss_pred             EEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295          124 LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       124 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                      +++|++|.+|++||+..      +.+...+++|..-++          ++.|+..       .+++|+.|     |+|+|
T Consensus       373 vVSGSSDntIRlwdi~~------G~cLRvLeGHEeLvR----------ciRFd~k-------rIVSGaYD-----Gkikv  424 (499)
T KOG0281|consen  373 VVSGSSDNTIRLWDIEC------GACLRVLEGHEELVR----------CIRFDNK-------RIVSGAYD-----GKIKV  424 (499)
T ss_pred             EEecCCCceEEEEeccc------cHHHHHHhchHHhhh----------heeecCc-------eeeecccc-----ceEEE
Confidence            77777777777777765      566666667766666          7888654       69999999     99999


Q ss_pred             EEeecCCCCcceeEeee--cCCCCCCceEEEEEe
Q 026295          204 WEFDEAHNRWLPVAELA--LPEDRSDEVYAVAWA  235 (240)
Q Consensus       204 w~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~s  235 (240)
                      ||+........+..++.  ....|++.|..++|.
T Consensus       425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD  458 (499)
T KOG0281|consen  425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD  458 (499)
T ss_pred             EecccccCCcccccchHHHhhhhccceeEEEeec
Confidence            99988765543322221  122477788888874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.93  E-value=2.8e-24  Score=159.70  Aligned_cols=204  Identities=13%  Similarity=0.146  Sum_probs=156.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +|.+|-..|..+++|+-..||++++.|+.|+.||+.     ..+.++.+.+|-..|++++..|.  -+.|++++.|.+++
T Consensus       188 tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe-----~nkvIR~YhGHlS~V~~L~lhPT--ldvl~t~grDst~R  260 (460)
T KOG0285|consen  188 TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE-----YNKVIRHYHGHLSGVYCLDLHPT--LDVLVTGGRDSTIR  260 (460)
T ss_pred             eecchhheeeeeeecccCceEEEecCCCeeEEEech-----hhhhHHHhccccceeEEEecccc--ceeEEecCCcceEE
Confidence            466788999999999999999999999999999999     44788999999999999999998  89999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec-
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM-  162 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~-  162 (240)
                      +||+++.       ..+..+.+|...|..+.+.|  ....+++|+.|++|++||++.+      +-...+..|...++. 
T Consensus       261 vWDiRtr-------~~V~~l~GH~~~V~~V~~~~--~dpqvit~S~D~tvrlWDl~ag------kt~~tlt~hkksvral  325 (460)
T KOG0285|consen  261 VWDIRTR-------ASVHVLSGHTNPVASVMCQP--TDPQVITGSHDSTVRLWDLRAG------KTMITLTHHKKSVRAL  325 (460)
T ss_pred             Eeeeccc-------ceEEEecCCCCcceeEEeec--CCCceEEecCCceEEEeeeccC------ceeEeeecccceeeEE
Confidence            9999988       78999999999999999987  5556999999999999999863      322333333333321 


Q ss_pred             ------------------------------cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          163 ------------------------------FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       163 ------------------------------~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                                                    ...+...+++++-+.++      ++++|+..     |.+..||..++..-
T Consensus       326 ~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~------v~~~G~dn-----g~~~fwdwksg~ny  394 (460)
T KOG0285|consen  326 CLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG------VLVSGGDN-----GSIMFWDWKSGHNY  394 (460)
T ss_pred             ecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCc------eEEEcCCc-----eEEEEEecCcCccc
Confidence                                          01112244555555555      78889888     99999999887533


Q ss_pred             ccee-EeeecCCCCCCceEEEEEecCCCC
Q 026295          213 WLPV-AELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       213 ~~~~-~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                      .... ..-++.-.-+..|++.+|...+.|
T Consensus       395 Q~~~t~vqpGSl~sEagI~as~fDktg~r  423 (460)
T KOG0285|consen  395 QRGQTIVQPGSLESEAGIFASCFDKTGSR  423 (460)
T ss_pred             ccccccccCCccccccceeEEeecccCce
Confidence            2211 111222224457899999887754

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=2.7e-23  Score=151.99  Aligned_cols=191  Identities=14%  Similarity=0.140  Sum_probs=152.4

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--C
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--D   79 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d   79 (240)
                      +|.+....+.|+++.|+.+|.+|++++.|.+++|||..     .++.+.++..++-.+..++|.+.  ...++.++.  |
T Consensus         7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~-----~g~~~~ti~skkyG~~~~~Fth~--~~~~i~sStk~d   79 (311)
T KOG1446|consen    7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSL-----SGKQVKTINSKKYGVDLACFTHH--SNTVIHSSTKED   79 (311)
T ss_pred             ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcC-----CCceeeEeecccccccEEEEecC--CceEEEccCCCC
Confidence            45567777899999999999999999999999999998     66788888877778999999887  666666655  8


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .+|+..++..+       +.++.|.+|...|.+++.+|  -+..+++++.|++|++||++..      +++..+.....+
T Consensus        80 ~tIryLsl~dN-------kylRYF~GH~~~V~sL~~sP--~~d~FlS~S~D~tvrLWDlR~~------~cqg~l~~~~~p  144 (311)
T KOG1446|consen   80 DTIRYLSLHDN-------KYLRYFPGHKKRVNSLSVSP--KDDTFLSSSLDKTVRLWDLRVK------KCQGLLNLSGRP  144 (311)
T ss_pred             CceEEEEeecC-------ceEEEcCCCCceEEEEEecC--CCCeEEecccCCeEEeeEecCC------CCceEEecCCCc
Confidence            89999999877       99999999999999999999  7788999999999999999962      333333222221


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                                  ..+|+|.+-     ++|++...     ..|++||++.-....  ...+....+-....+.|.|||||
T Consensus       145 ------------i~AfDp~GL-----ifA~~~~~-----~~IkLyD~Rs~dkgP--F~tf~i~~~~~~ew~~l~FS~dG  199 (311)
T KOG1446|consen  145 ------------IAAFDPEGL-----IFALANGS-----ELIKLYDLRSFDKGP--FTTFSITDNDEAEWTDLEFSPDG  199 (311)
T ss_pred             ------------ceeECCCCc-----EEEEecCC-----CeEEEEEecccCCCC--ceeEccCCCCccceeeeEEcCCC
Confidence                        678999997     88888876     799999998764332  22222222334478999999998

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=7.8e-24  Score=151.69  Aligned_cols=170  Identities=11%  Similarity=0.164  Sum_probs=141.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-----
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-----   78 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----   78 (240)
                      +..+|.++|+|+..+.+.++|+||+.|.++++||+.     +++++..++. ..+|..+.|++.  |++++....     
T Consensus        47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-----tGk~la~~k~-~~~Vk~~~F~~~--gn~~l~~tD~~mg~  118 (327)
T KOG0643|consen   47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-----TGKQLATWKT-NSPVKRVDFSFG--GNLILASTDKQMGY  118 (327)
T ss_pred             eecCCCceEEEEEecCCcceeeeccccceeEEEEcC-----CCcEEEEeec-CCeeEEEeeccC--CcEEEEEehhhcCc
Confidence            467899999999999999999999999999999999     7888988885 678999999999  888776543     


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      .+.|.++|++........-.+...+..+.+.++.+-|.|  -+++|++|..||.|.+||.+++     .+.+.....|..
T Consensus       119 ~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g-----~~~v~s~~~h~~  191 (327)
T KOG0643|consen  119 TCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTG-----KELVDSDEEHSS  191 (327)
T ss_pred             ceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccC-----ceeeechhhhcc
Confidence            368999999854322122256777777889999999999  9999999999999999999974     355555556655


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .|.          .++++|+..     ++++++.|     .+-++||+++
T Consensus       192 ~In----------d~q~s~d~T-----~FiT~s~D-----ttakl~D~~t  221 (327)
T KOG0643|consen  192 KIN----------DLQFSRDRT-----YFITGSKD-----TTAKLVDVRT  221 (327)
T ss_pred             ccc----------cccccCCcc-----eEEecccC-----ccceeeeccc
Confidence            555          999999998     99999999     9999999865

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.93  E-value=5.4e-24  Score=158.29  Aligned_cols=122  Identities=20%  Similarity=0.338  Sum_probs=107.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|+++.|+.+|.+||||+.+|.|+||+..     +......+..--..+-=++|+|.  +..|+.|+.||.+.
T Consensus       101 eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-----tg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvW  173 (399)
T KOG0296|consen  101 ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-----TGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVW  173 (399)
T ss_pred             EecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-----cCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEE
Confidence            467899999999999999999999999999999998     44444555433456778999998  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      +|.+.++       ...+.+.+|..++++-.|.|  +|+.++++..||+|++|++.+.
T Consensus       174 mw~ip~~-------~~~kv~~Gh~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  174 MWQIPSQ-------ALCKVMSGHNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             EEECCCc-------ceeeEecCCCCCcccccccC--CCceEEEEecCceEEEEecCCC
Confidence            9999775       67888999999999999999  9999999999999999999874

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.93  E-value=2.8e-23  Score=158.52  Aligned_cols=187  Identities=21%  Similarity=0.378  Sum_probs=152.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|...|.++.|+++++++++++.|+.|++|++.     +.+....+..|...+.++.|+|+  +.++++++.|+.|+
T Consensus        88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~~~~i~  160 (289)
T cd00200          88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TGKCLTTLRGHTDWVNSVAFSPD--GTFVASSSQDGTIK  160 (289)
T ss_pred             EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-----CcEEEEEeccCCCcEEEEEEcCc--CCEEEEEcCCCcEE
Confidence            355678899999999999999999889999999998     45677778889999999999998  88888888899999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||++..       +....+..+...+.++.|+|  ++..+++++.|+.|++||++.      .+....+..+...+.  
T Consensus       161 i~d~~~~-------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~------~~~~~~~~~~~~~i~--  223 (289)
T cd00200         161 LWDLRTG-------KCVATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLST------GKCLGTLRGHENGVN--  223 (289)
T ss_pred             EEEcccc-------ccceeEecCccccceEEECC--CcCEEEEecCCCcEEEEECCC------CceecchhhcCCceE--
Confidence            9999765       67777778888999999999  888899999999999999986      455555555555555  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              ++.|+|++.     ++++++.+     +.|++|++.+..    ....+.   .|...|.+++|+|++.
T Consensus       224 --------~~~~~~~~~-----~~~~~~~~-----~~i~i~~~~~~~----~~~~~~---~~~~~i~~~~~~~~~~  274 (289)
T cd00200         224 --------SVAFSPDGY-----LLASGSED-----GTIRVWDLRTGE----CVQTLS---GHTNSVTSLAWSPDGK  274 (289)
T ss_pred             --------EEEEcCCCc-----EEEEEcCC-----CcEEEEEcCCce----eEEEcc---ccCCcEEEEEECCCCC
Confidence                    899999865     67766657     999999987643    223333   4677999999999853

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.92  E-value=3.7e-23  Score=179.09  Aligned_cols=187  Identities=16%  Similarity=0.244  Sum_probs=147.3

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            9 DKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         9 ~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ...|.+++|++ .+.+|++++.||+|+|||+.     +.+.+..+.+|.+.|++++|+|. .+.+|++++.|+.|++||+
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~-----~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~  605 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVA-----RSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSI  605 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECC-----CCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEEC
Confidence            45788999987 47899999999999999998     55778888999999999999973 1789999999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      ..+       ..+..+..+ ..+.++.|++. ++.+|++|+.||.|++||++..     ......+..|...+.      
T Consensus       606 ~~~-------~~~~~~~~~-~~v~~v~~~~~-~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~------  665 (793)
T PLN00181        606 NQG-------VSIGTIKTK-ANICCVQFPSE-SGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVS------  665 (793)
T ss_pred             CCC-------cEEEEEecC-CCeEEEEEeCC-CCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEE------
Confidence            765       666666644 67889999541 6889999999999999999863     123344556666666      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC--CcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN--RWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                          ++.|.+ +.     +|++++.|     +.|+|||+.....  .+.....+   .+|...++.++|+|+++
T Consensus       666 ----~v~f~~-~~-----~lvs~s~D-----~~ikiWd~~~~~~~~~~~~l~~~---~gh~~~i~~v~~s~~~~  721 (793)
T PLN00181        666 ----YVRFVD-SS-----TLVSSSTD-----NTLKLWDLSMSISGINETPLHSF---MGHTNVKNFVGLSVSDG  721 (793)
T ss_pred             ----EEEEeC-CC-----EEEEEECC-----CEEEEEeCCCCccccCCcceEEE---cCCCCCeeEEEEcCCCC
Confidence                899974 33     79999998     9999999875421  12233333   36888999999999864

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=7.6e-24  Score=154.05  Aligned_cols=202  Identities=18%  Similarity=0.245  Sum_probs=146.8

Q ss_pred             cccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            8 LDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         8 h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      -++.|.+++||| ...++++++.|++||+|++...+  .... .....|.++|.+++|+.+  |..+++++.|+.+++||
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g--~~~~-ka~~~~~~PvL~v~Wsdd--gskVf~g~~Dk~~k~wD  100 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG--QLVP-KAQQSHDGPVLDVCWSDD--GSKVFSGGCDKQAKLWD  100 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCC--cccc-hhhhccCCCeEEEEEccC--CceEEeeccCCceEEEE
Confidence            356899999999 55677799999999999998643  1112 344578999999999999  99999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee------------------
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ------------------  148 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------------------  148 (240)
                      +..+        .+..+..|..+|..+.|-+..+...|++|+.|.+|++||++.+.+....+                  
T Consensus       101 L~S~--------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVa  172 (347)
T KOG0647|consen  101 LASG--------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVA  172 (347)
T ss_pred             ccCC--------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEE
Confidence            9874        46667789999999999874344589999999999999997543221100                  


Q ss_pred             ------------------------------EEeeeecccc----------ee---ec---c--------------ccccc
Q 026295          149 ------------------------------LQAEFQNAID----------SV---TM---F--------------RKASC  168 (240)
Q Consensus       149 ------------------------------~~~~~~~~~~----------~v---~~---~--------------~~~~~  168 (240)
                                                    ++..+.....          .+   .+   .              ....-
T Consensus       173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY  252 (347)
T KOG0647|consen  173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY  252 (347)
T ss_pred             ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence                                          0000000000          00   00   0              00012


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .||+++|+|...     .|+|+++|     |++..||-+...+..       ..+.|..+|++.+|+-+|.
T Consensus       253 aVNsi~FhP~hg-----tlvTaGsD-----Gtf~FWDkdar~kLk-------~s~~~~qpItcc~fn~~G~  306 (347)
T KOG0647|consen  253 AVNSIAFHPVHG-----TLVTAGSD-----GTFSFWDKDARTKLK-------TSETHPQPITCCSFNRNGS  306 (347)
T ss_pred             EecceEeecccc-----eEEEecCC-----ceEEEecchhhhhhh-------ccCcCCCccceeEecCCCC
Confidence            578999999887     89999999     999999987654332       2234777999999998874

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=5e-23  Score=144.70  Aligned_cols=193  Identities=17%  Similarity=0.262  Sum_probs=149.4

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC-----------------------------------------
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS-----------------------------------------   43 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~-----------------------------------------   43 (240)
                      -+.|.+.|.|.+|+|+|.+||+|+.|++|++..+.....                                         
T Consensus        85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~  164 (350)
T KOG0641|consen   85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK  164 (350)
T ss_pred             ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence            345888999999999999999999999999976543210                                         


Q ss_pred             ------CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee-------ccccE
Q 026295           44 ------SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES-------TSTQV  110 (240)
Q Consensus        44 ------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-------~~~~v  110 (240)
                            ++++..+.+.+|++-|.++- +-+  +-++++|++|.+|+.||++..       .++.++..       ....|
T Consensus       165 iy~tdc~~g~~~~a~sghtghilaly-swn--~~m~~sgsqdktirfwdlrv~-------~~v~~l~~~~~~~glessav  234 (350)
T KOG0641|consen  165 IYITDCGRGQGFHALSGHTGHILALY-SWN--GAMFASGSQDKTIRFWDLRVN-------SCVNTLDNDFHDGGLESSAV  234 (350)
T ss_pred             EEEeecCCCCcceeecCCcccEEEEE-Eec--CcEEEccCCCceEEEEeeecc-------ceeeeccCcccCCCccccee
Confidence                  11222334456666665542 123  678999999999999999876       66666542       34678


Q ss_pred             EeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEE
Q 026295          111 LDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG  190 (240)
Q Consensus       111 ~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~  190 (240)
                      .+++..|  .|++|++|-.|....+||++.      ..+++.+..|...|+          +|.|+|...     +++++
T Consensus       235 aav~vdp--sgrll~sg~~dssc~lydirg------~r~iq~f~phsadir----------~vrfsp~a~-----yllt~  291 (350)
T KOG0641|consen  235 AAVAVDP--SGRLLASGHADSSCMLYDIRG------GRMIQRFHPHSADIR----------CVRFSPGAH-----YLLTC  291 (350)
T ss_pred             EEEEECC--CcceeeeccCCCceEEEEeeC------CceeeeeCCCcccee----------EEEeCCCce-----EEEEe
Confidence            9999999  999999999999999999998      688889999988888          999999987     99999


Q ss_pred             ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          191 FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       191 ~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +.|     .+|++-|++...........+.   .|.+.+-.+.|+|..
T Consensus       292 syd-----~~ikltdlqgdla~el~~~vv~---ehkdk~i~~rwh~~d  331 (350)
T KOG0641|consen  292 SYD-----MKIKLTDLQGDLAHELPIMVVA---EHKDKAIQCRWHPQD  331 (350)
T ss_pred             ccc-----ceEEEeecccchhhcCceEEEE---eccCceEEEEecCcc
Confidence            999     9999999987543322333333   366688899999863

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=9.3e-25  Score=175.92  Aligned_cols=190  Identities=20%  Similarity=0.347  Sum_probs=150.1

Q ss_pred             hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.+|+..++++.|++. -.+|++|+.||+|++||++.     -....++.+....|.+|+|+|. .+..|+++...|.+
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~-----~~S~~t~~~nSESiRDV~fsp~-~~~~F~s~~dsG~l  201 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRS-----KKSKSTFRSNSESIRDVKFSPG-YGNKFASIHDSGYL  201 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeec-----ccccccccccchhhhceeeccC-CCceEEEecCCceE
Confidence            36789999999999995 47999999999999999983     3456677778889999999997 57899999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||++..+      ++...+..|.+.|.++.|+|  ++.+||+|+.|++|+|||..++..    .....+..       
T Consensus       202 qlWDlRqp~------r~~~k~~AH~GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~~~----~~~~tInT-------  262 (839)
T KOG0269|consen  202 QLWDLRQPD------RCEKKLTAHNGPVLCLNWHP--NREWLATGGRDKMVKIWDMTDSRA----KPKHTINT-------  262 (839)
T ss_pred             EEeeccCch------hHHHHhhcccCceEEEeecC--CCceeeecCCCccEEEEeccCCCc----cceeEEee-------
Confidence            999998654      66777888999999999999  999999999999999999986321    12222211       


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                          .+.+..|.|.|....    .||+++. +|    -.|+|||++....   +...+.   .|...|+.++|.-
T Consensus       263 ----iapv~rVkWRP~~~~----hLAtcsmv~d----tsV~VWDvrRPYI---P~~t~~---eH~~~vt~i~W~~  319 (839)
T KOG0269|consen  263 ----IAPVGRVKWRPARSY----HLATCSMVVD----TSVHVWDVRRPYI---PYATFL---EHTDSVTGIAWDS  319 (839)
T ss_pred             ----cceeeeeeeccCccc----hhhhhhcccc----ceEEEEeeccccc---cceeee---ccCccccceeccC
Confidence                112238999999863    7887764 33    7999999987543   333333   5777999999964

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=1.7e-24  Score=158.28  Aligned_cols=197  Identities=13%  Similarity=0.159  Sum_probs=151.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCC------C-------CCCcEEEEeEeeecCccEEEEEEcCCCCCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPD------P-------SSSSFTCNLKTKVHAGAILKVVWVPPEFGD   71 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~------~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~   71 (240)
                      +..|...+++.+|++||.++|||+.|-.|+|.|+..      +       .+.....++++..|..+|+++.|.|.  ..
T Consensus       108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr--e~  185 (430)
T KOG0640|consen  108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR--ET  185 (430)
T ss_pred             EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch--hh
Confidence            667999999999999999999999999999999861      1       01122467888999999999999999  99


Q ss_pred             EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe
Q 026295           72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA  151 (240)
Q Consensus        72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  151 (240)
                      +|++++.|++|++||+.....     +.....-.....|+++.|+|  .|.+|++|..-.++++||+.+      .++..
T Consensus       186 ILiS~srD~tvKlFDfsK~sa-----KrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T------~Qcfv  252 (430)
T KOG0640|consen  186 ILISGSRDNTVKLFDFSKTSA-----KRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNT------YQCFV  252 (430)
T ss_pred             eEEeccCCCeEEEEecccHHH-----HHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccc------eeEee
Confidence            999999999999999975421     22112223457899999999  999999999999999999998      55543


Q ss_pred             eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                      .-.       |...+...+++|.+++.+.     +.++|+.|     |.|+|||--.+.+......   .|  -...|.+
T Consensus       253 san-------Pd~qht~ai~~V~Ys~t~~-----lYvTaSkD-----G~IklwDGVS~rCv~t~~~---AH--~gsevcS  310 (430)
T KOG0640|consen  253 SAN-------PDDQHTGAITQVRYSSTGS-----LYVTASKD-----GAIKLWDGVSNRCVRTIGN---AH--GGSEVCS  310 (430)
T ss_pred             ecC-------cccccccceeEEEecCCcc-----EEEEeccC-----CcEEeeccccHHHHHHHHh---hc--CCceeee
Confidence            321       2222333445999999998     89999999     9999999877655433311   12  2236888


Q ss_pred             EEEecCC
Q 026295          232 VAWALNI  238 (240)
Q Consensus       232 v~~sp~~  238 (240)
                      ..|..|+
T Consensus       311 a~Ftkn~  317 (430)
T KOG0640|consen  311 AVFTKNG  317 (430)
T ss_pred             EEEccCC
Confidence            8888775

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.92  E-value=3.6e-23  Score=160.53  Aligned_cols=191  Identities=17%  Similarity=0.357  Sum_probs=156.3

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC----C
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD----G   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~   80 (240)
                      ..+|...++-..|+|.|-++|+|...|.|||||....   +.-+..+++.-.++|.+|+|+.+  ++.++..+.-    |
T Consensus        55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~---~hiLKnef~v~aG~I~Di~Wd~d--s~RI~avGEGrerfg  129 (603)
T KOG0318|consen   55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQK---EHILKNEFQVLAGPIKDISWDFD--SKRIAAVGEGRERFG  129 (603)
T ss_pred             eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCc---ceeeeeeeeecccccccceeCCC--CcEEEEEecCcccee
Confidence            4568889999999999999999999999999999754   44556677777899999999999  8888776542    3


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .+.+||.  +       ..+..+.+|...|.+++|-|.+. -.+++|+.|++|.+|+=.-      ++....+..|..-+
T Consensus       130 ~~F~~DS--G-------~SvGei~GhSr~ins~~~KpsRP-fRi~T~sdDn~v~ffeGPP------FKFk~s~r~HskFV  193 (603)
T KOG0318|consen  130 HVFLWDS--G-------NSVGEITGHSRRINSVDFKPSRP-FRIATGSDDNTVAFFEGPP------FKFKSSFREHSKFV  193 (603)
T ss_pred             EEEEecC--C-------CccceeeccceeEeeeeccCCCc-eEEEeccCCCeEEEeeCCC------eeeeecccccccce
Confidence            4566665  4       56788999999999999988533 3599999999999998543      56666777777766


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                      .          ++.|+|++.     +|++++.|     |+|.|||-.+++    .+.+++...+|.+.|++|+|+||+.+
T Consensus       194 ~----------~VRysPDG~-----~Fat~gsD-----gki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs~~  249 (603)
T KOG0318|consen  194 N----------CVRYSPDGS-----RFATAGSD-----GKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDSTQ  249 (603)
T ss_pred             e----------eEEECCCCC-----eEEEecCC-----ccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCCce
Confidence            6          999999998     89999999     999999988876    45555656678889999999999853

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.5e-23  Score=159.06  Aligned_cols=187  Identities=16%  Similarity=0.144  Sum_probs=151.8

Q ss_pred             chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ..++.|+.+|..+.|+|++ ..|++|+.|+.+++||+.     +......+.+|+..|.+.+|+|. .++++++|+.||.
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s-----~a~v~~~l~~htDYVR~g~~~~~-~~hivvtGsYDg~  177 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS-----TAYVQAELSGHTDYVRCGDISPA-NDHIVVTGSYDGK  177 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcC-----CcEEEEEecCCcceeEeeccccC-CCeEEEecCCCce
Confidence            3478899999999999955 688899999999999998     44456688899999999999987 3679999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |++||.+..+      ..+.++ .|..+|..+.+-|  +|..+++++.+ .|++||+.++     +++...+..|...|+
T Consensus       178 vrl~DtR~~~------~~v~el-nhg~pVe~vl~lp--sgs~iasAgGn-~vkVWDl~~G-----~qll~~~~~H~KtVT  242 (487)
T KOG0310|consen  178 VRLWDTRSLT------SRVVEL-NHGCPVESVLALP--SGSLIASAGGN-SVKVWDLTTG-----GQLLTSMFNHNKTVT  242 (487)
T ss_pred             EEEEEeccCC------ceeEEe-cCCCceeeEEEcC--CCCEEEEcCCC-eEEEEEecCC-----ceehhhhhcccceEE
Confidence            9999998752      233444 4789999999999  88888888864 7999999864     555556666888887


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                                |+.+..++.     .|++|+-|     +.|++||+.+    ++....+.    -.++|.+++.+||+
T Consensus       243 ----------cL~l~s~~~-----rLlS~sLD-----~~VKVfd~t~----~Kvv~s~~----~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  243 ----------CLRLASDST-----RLLSGSLD-----RHVKVFDTTN----YKVVHSWK----YPGPVLSIAVSPDD  291 (487)
T ss_pred             ----------EEEeecCCc-----eEeecccc-----cceEEEEccc----eEEEEeee----cccceeeEEecCCC
Confidence                      999988776     89999999     9999999665    33444432    44499999999975

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=5.1e-24  Score=162.22  Aligned_cols=202  Identities=16%  Similarity=0.244  Sum_probs=155.5

Q ss_pred             cccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295            6 ATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      .-|++.|+.+++-|+. ..+|+.+..+.|.|||..+...     +...+-..+.+|+..-++|+|++.. .-.+++++.|
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~-~g~Lls~~~d  199 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQ-EGTLLSGSDD  199 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeeccccccccccccc-ceeEeeccCC
Confidence            3488999999999966 5777788889999999875321     0223344788999988899998873 3467899999


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +.|++||+.....+.....+...+.+|...|..++|+|. +...|++++.|+.+.|||+|+.    .-++......|...
T Consensus       200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-h~~lF~sv~dd~~L~iwD~R~~----~~~~~~~~~ah~~~  274 (422)
T KOG0264|consen  200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-HEDLFGSVGDDGKLMIWDTRSN----TSKPSHSVKAHSAE  274 (422)
T ss_pred             CcEEEEeccccccCCccccceEEeecCCcceehhhcccc-chhhheeecCCCeEEEEEcCCC----CCCCcccccccCCc
Confidence            999999998654433445667788899999999999985 3446899999999999999962    12334444556555


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +.          +++|+|.+..    +||+|++|     ++|.+||+++-..      .+...++|...|..|.|||.-
T Consensus       275 vn----------~~~fnp~~~~----ilAT~S~D-----~tV~LwDlRnL~~------~lh~~e~H~dev~~V~WSPh~  328 (422)
T KOG0264|consen  275 VN----------CVAFNPFNEF----ILATGSAD-----KTVALWDLRNLNK------PLHTFEGHEDEVFQVEWSPHN  328 (422)
T ss_pred             ee----------EEEeCCCCCc----eEEeccCC-----CcEEEeechhccc------CceeccCCCcceEEEEeCCCC
Confidence            55          9999998853    99999999     9999999998543      223345788899999999974

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.92  E-value=2.6e-24  Score=152.93  Aligned_cols=183  Identities=19%  Similarity=0.281  Sum_probs=149.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|..-|.+++|+.|.++|++|+.+..+||||++.+.    .+...+.+|.+.|..+.|...  .+.++++..|++||+||
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~----App~E~~ghtg~Ir~v~wc~e--D~~iLSSadd~tVRLWD  171 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK----APPKEISGHTGGIRTVLWCHE--DKCILSSADDKTVRLWD  171 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCC----CCchhhcCCCCcceeEEEecc--CceEEeeccCCceEEEE
Confidence            466789999999999999999999999999998653    345677899999999999988  78888989999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      .+++       ..++.+.- ...|.++.+++  +|.+|.++. .+.|++||...      +.++..+.           .
T Consensus       172 ~rTg-------t~v~sL~~-~s~VtSlEvs~--dG~ilTia~-gssV~Fwdaks------f~~lKs~k-----------~  223 (334)
T KOG0278|consen  172 HRTG-------TEVQSLEF-NSPVTSLEVSQ--DGRILTIAY-GSSVKFWDAKS------FGLLKSYK-----------M  223 (334)
T ss_pred             eccC-------cEEEEEec-CCCCcceeecc--CCCEEEEec-CceeEEecccc------ccceeecc-----------C
Confidence            9987       77777764 47899999998  999665554 56899999987      55554432           3


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .|+|.+.+++|+..     .+++|+.|     ..++.||+.++...-..      ..+|-++|.+|.|+|||-
T Consensus       224 P~nV~SASL~P~k~-----~fVaGged-----~~~~kfDy~TgeEi~~~------nkgh~gpVhcVrFSPdGE  280 (334)
T KOG0278|consen  224 PCNVESASLHPKKE-----FFVAGGED-----FKVYKFDYNTGEEIGSY------NKGHFGPVHCVRFSPDGE  280 (334)
T ss_pred             ccccccccccCCCc-----eEEecCcc-----eEEEEEeccCCceeeec------ccCCCCceEEEEECCCCc
Confidence            46666889999987     88999998     99999999987633111      247888999999999983

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=4.2e-23  Score=153.57  Aligned_cols=167  Identities=13%  Similarity=0.144  Sum_probs=145.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.+.|.+++.+|+.++++||+.|....||++.     ++..+..+.+|+..|.++.|+.+  |.+|++|+.+|.|+
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~-----~ge~~~eltgHKDSVt~~~Fshd--gtlLATGdmsG~v~  131 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDIS-----TGEFAGELTGHKDSVTCCSFSHD--GTLLATGDMSGKVL  131 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEcc-----CCcceeEecCCCCceEEEEEccC--ceEEEecCCCccEE
Confidence            477899999999999999999999999999999998     56678888999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||...++       .....+......+.=+.|+|  .+.+|++|+.||.|-+|.+..      ....+.+.+|..++.  
T Consensus       132 v~~~stg-------~~~~~~~~e~~dieWl~WHp--~a~illAG~~DGsvWmw~ip~------~~~~kv~~Gh~~~ct--  194 (399)
T KOG0296|consen  132 VFKVSTG-------GEQWKLDQEVEDIEWLKWHP--RAHILLAGSTDGSVWMWQIPS------QALCKVMSGHNSPCT--  194 (399)
T ss_pred             EEEcccC-------ceEEEeecccCceEEEEecc--cccEEEeecCCCcEEEEECCC------cceeeEecCCCCCcc--
Confidence            9999887       44555555556777899999  999999999999999999976      355566677766555  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                              +-.|.|++.     .++++..|     ++|++|++.+++..
T Consensus       195 --------~G~f~pdGK-----r~~tgy~d-----gti~~Wn~ktg~p~  225 (399)
T KOG0296|consen  195 --------CGEFIPDGK-----RILTGYDD-----GTIIVWNPKTGQPL  225 (399)
T ss_pred             --------cccccCCCc-----eEEEEecC-----ceEEEEecCCCcee
Confidence                    778999988     89999998     99999999887543

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.92  E-value=5.1e-23  Score=156.33  Aligned_cols=186  Identities=19%  Similarity=0.206  Sum_probs=150.8

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +..|+++|+.+..+|.|.||++++.|++.-+.|+.     ++..+.....  ..-.+++.+|+|+  |.+|.+|..|+.|
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~-----~g~~lt~vs~~~s~v~~ts~~fHpD--gLifgtgt~d~~v  371 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS-----SGSQLTVVSDETSDVEYTSAAFHPD--GLIFGTGTPDGVV  371 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEcc-----CCcEEEEEeeccccceeEEeeEcCC--ceEEeccCCCceE
Confidence            56799999999999999999999999999999998     4455544432  2345899999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||+..+       ..+..|.+|+++|..++|+-  ||.+|++++.|+.|++||+|...      ...++......   
T Consensus       372 kiwdlks~-------~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~------n~kt~~l~~~~---  433 (506)
T KOG0289|consen  372 KIWDLKSQ-------TNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLK------NFKTIQLDEKK---  433 (506)
T ss_pred             EEEEcCCc-------cccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhc------ccceeeccccc---
Confidence            99999887       67889999999999999987  99999999999999999999843      33333322110   


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                            .+++++|++.+.     +|+.++.       .|+||.+......|.....+.   .|++..+.+.|..
T Consensus       434 ------~v~s~~fD~SGt-----~L~~~g~-------~l~Vy~~~k~~k~W~~~~~~~---~~sg~st~v~Fg~  486 (506)
T KOG0289|consen  434 ------EVNSLSFDQSGT-----YLGIAGS-------DLQVYICKKKTKSWTEIKELA---DHSGLSTGVRFGE  486 (506)
T ss_pred             ------cceeEEEcCCCC-----eEEeecc-------eeEEEEEecccccceeeehhh---hcccccceeeecc
Confidence                  123899999998     8988874       488888877777788877665   4666788888754

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=4.5e-23  Score=156.58  Aligned_cols=189  Identities=17%  Similarity=0.237  Sum_probs=155.8

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+.+|...|+.+.|+++...+++++.|..|+||.....     ........|+++|+.+...|.  |.||++++.|+..
T Consensus       255 ~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~-----s~~~~~~~h~~~V~~ls~h~t--geYllsAs~d~~w  327 (506)
T KOG0289|consen  255 ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS-----SEPTSSRPHEEPVTGLSLHPT--GEYLLSASNDGTW  327 (506)
T ss_pred             hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-----cCccccccccccceeeeeccC--CcEEEEecCCceE
Confidence            457889999999999999999999999999999998733     345566789999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      ...|++.+       ..+.....  ..-.+++.+|+|  +|.+|.+|..||.|+|||+..      ......|.+|..+|
T Consensus       328 ~Fsd~~~g-------~~lt~vs~~~s~v~~ts~~fHp--DgLifgtgt~d~~vkiwdlks------~~~~a~Fpght~~v  392 (506)
T KOG0289|consen  328 AFSDISSG-------SQLTVVSDETSDVEYTSAAFHP--DGLIFGTGTPDGVVKIWDLKS------QTNVAKFPGHTGPV  392 (506)
T ss_pred             EEEEccCC-------cEEEEEeeccccceeEEeeEcC--CceEEeccCCCceEEEEEcCC------ccccccCCCCCCce
Confidence            99999876       55544443  334589999999  999999999999999999998      45667778888888


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          +++|+.+|-     +|+++..|     +.|++||++.....    ..+...+.  ..|.+++|.+.|.
T Consensus       393 k----------~i~FsENGY-----~Lat~add-----~~V~lwDLRKl~n~----kt~~l~~~--~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  393 K----------AISFSENGY-----WLATAADD-----GSVKLWDLRKLKNF----KTIQLDEK--KEVNSLSFDQSGT  445 (506)
T ss_pred             e----------EEEeccCce-----EEEEEecC-----CeEEEEEehhhccc----ceeecccc--ccceeEEEcCCCC
Confidence            8          999999986     89999998     99999999875422    22222221  1689999998874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=7.7e-23  Score=149.67  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=106.9

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|.+.|++++.+  +.++|+|+.|-+|+|||+.     ....+..+-.|.+.|+++.|.++.....|++|+.||.|.+
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~-----k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMR-----KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEecc-----chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            45689999999975  8999999999999999998     4456777778999999999999833348999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      |+.       ..|.++..++.|...|+.++++|  .+++-++.+.|+.+++||+-.
T Consensus       112 w~~-------~~W~~~~slK~H~~~Vt~lsiHP--S~KLALsVg~D~~lr~WNLV~  158 (362)
T KOG0294|consen  112 WRV-------GSWELLKSLKAHKGQVTDLSIHP--SGKLALSVGGDQVLRTWNLVR  158 (362)
T ss_pred             EEc-------CCeEEeeeecccccccceeEecC--CCceEEEEcCCceeeeehhhc
Confidence            998       35799999999999999999999  999999999999999999864

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=3e-23  Score=164.07  Aligned_cols=181  Identities=19%  Similarity=0.346  Sum_probs=151.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ++.|+++.|+++|++||+|..+|.|.|||..     +.+.+..+.+ |...|-+++|+    +..+.+|+.|+.|..+|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~-----~~k~~~~~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVK-----EQKKTRTLRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDV  287 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehh-----hccccccccCCcCceeEEEecc----CceEEEecCCCcEEEEEE
Confidence            6789999999999999999999999999998     5567788888 99999999995    467889999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      +...      .....+.+|...|..++|++  ++.++|+|+.|+.+.|||...      .++...+..|...|.      
T Consensus       288 R~~~------~~~~~~~~H~qeVCgLkws~--d~~~lASGgnDN~~~Iwd~~~------~~p~~~~~~H~aAVK------  347 (484)
T KOG0305|consen  288 RISQ------HVVSTLQGHRQEVCGLKWSP--DGNQLASGGNDNVVFIWDGLS------PEPKFTFTEHTAAVK------  347 (484)
T ss_pred             ecch------hhhhhhhcccceeeeeEECC--CCCeeccCCCccceEeccCCC------ccccEEEeccceeee------
Confidence            8763      22224788999999999999  999999999999999999966      466777888888888      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                          +++|+|-...    +||+|+. .|    +.|++||..++......        .-.+.|..|.|+|..
T Consensus       348 ----A~awcP~q~~----lLAsGGGs~D----~~i~fwn~~~g~~i~~v--------dtgsQVcsL~Wsk~~  399 (484)
T KOG0305|consen  348 ----ALAWCPWQSG----LLATGGGSAD----RCIKFWNTNTGARIDSV--------DTGSQVCSLIWSKKY  399 (484)
T ss_pred             ----EeeeCCCccC----ceEEcCCCcc----cEEEEEEcCCCcEeccc--------ccCCceeeEEEcCCC
Confidence                9999998764    8888862 23    99999999876533222        244589999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=7.3e-23  Score=164.77  Aligned_cols=192  Identities=21%  Similarity=0.193  Sum_probs=159.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC--CcEEEE------eEeeecCccEEEEEEcCCCCCCEEE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS--SSFTCN------LKTKVHAGAILKVVWVPPEFGDAVA   74 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~------~~~~~h~~~v~~~~~~~~~~~~~l~   74 (240)
                      ..++.|+++|.+++.+||++.++||+.|.+|++||..-...  ++.+..      .+++ -+..|.++.+||+  +.+|+
T Consensus       448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spd--gk~La  524 (888)
T KOG0306|consen  448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPD--GKLLA  524 (888)
T ss_pred             hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCC--CcEEE
Confidence            45778999999999999999999999999999999752111  121111      2222 3567999999999  99999


Q ss_pred             EEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           75 CICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        75 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      .+-.|.+|++|-+.+.       +....+-+|.-+|.++..+|  ++..+++|+.|..|+||-+.=      +.|...+-
T Consensus       525 VsLLdnTVkVyflDtl-------KFflsLYGHkLPV~smDIS~--DSklivTgSADKnVKiWGLdF------GDCHKS~f  589 (888)
T KOG0306|consen  525 VSLLDNTVKVYFLDTL-------KFFLSLYGHKLPVLSMDISP--DSKLIVTGSADKNVKIWGLDF------GDCHKSFF  589 (888)
T ss_pred             EEeccCeEEEEEecce-------eeeeeecccccceeEEeccC--CcCeEEeccCCCceEEecccc------chhhhhhh
Confidence            9999999999999876       77888889999999999999  999999999999999998875      67777888


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .|...|.          +|.|.|...     ++.+++-|     +.|+-||...-.    ....+.   +|...|++++-
T Consensus       590 AHdDSvm----------~V~F~P~~~-----~FFt~gKD-----~kvKqWDg~kFe----~iq~L~---~H~~ev~cLav  642 (888)
T KOG0306|consen  590 AHDDSVM----------SVQFLPKTH-----LFFTCGKD-----GKVKQWDGEKFE----EIQKLD---GHHSEVWCLAV  642 (888)
T ss_pred             cccCcee----------EEEEcccce-----eEEEecCc-----ceEEeechhhhh----hheeec---cchheeeeeEE
Confidence            8888777          999999776     89999999     999999976532    333333   68889999999


Q ss_pred             ecCCC
Q 026295          235 ALNIG  239 (240)
Q Consensus       235 sp~~~  239 (240)
                      +|+|+
T Consensus       643 ~~~G~  647 (888)
T KOG0306|consen  643 SPNGS  647 (888)
T ss_pred             cCCCC
Confidence            99984

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1.3e-21  Score=160.14  Aligned_cols=187  Identities=10%  Similarity=0.172  Sum_probs=135.5

Q ss_pred             hcccccceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +..|...|.+++|+|++.. |++++.|++|+|||+.     +.+.+..+. |...|.+++|+|+  |.+|++++.|+.|+
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~-----tg~~~~~i~-~~~~V~Slswspd--G~lLat~s~D~~Ir  192 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIE-----NEKRAFQIN-MPKKLSSLKWNIK--GNLLSGTCVGKHMH  192 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECC-----CCcEEEEEe-cCCcEEEEEECCC--CCEEEEEecCCEEE
Confidence            5679999999999999875 5799999999999998     444555554 5678999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeE-----EEeecCCCcEEEEEeCCC----cEEEEEecCcccccceeEEeeee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDV-----QFGVSSTSLKLVAAYSDG----HVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~~~l~~~~~dg----~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      |||++.+       ..+..+.+|...+...     .|++  ++.++++++.|+    +|+|||++..     ..++..+.
T Consensus       193 IwD~Rsg-------~~i~tl~gH~g~~~s~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~-----~~pl~~~~  258 (568)
T PTZ00420        193 IIDPRKQ-------EIASSFHIHDGGKNTKNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNT-----TSALVTMS  258 (568)
T ss_pred             EEECCCC-------cEEEEEecccCCceeEEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCC-----CCceEEEE
Confidence            9999876       7778888887654333     3446  778888888774    7999999852     12222221


Q ss_pred             --cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295          155 --NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       155 --~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v  232 (240)
                        .....+           ...|.++.    +.++++|..|     +.|++|++..+.     ...+.... +..++..+
T Consensus       259 ld~~~~~L-----------~p~~D~~t----g~l~lsGkGD-----~tIr~~e~~~~~-----~~~l~~~~-s~~p~~g~  312 (568)
T PTZ00420        259 IDNASAPL-----------IPHYDEST----GLIYLIGKGD-----GNCRYYQHSLGS-----IRKVNEYK-SCSPFRSF  312 (568)
T ss_pred             ecCCccce-----------EEeeeCCC----CCEEEEEECC-----CeEEEEEccCCc-----EEeecccc-cCCCccce
Confidence              111111           12355543    2378888888     999999997653     22222222 66789999


Q ss_pred             EEecCCC
Q 026295          233 AWALNIG  239 (240)
Q Consensus       233 ~~sp~~~  239 (240)
                      +|.|.-+
T Consensus       313 ~f~Pkr~  319 (568)
T PTZ00420        313 GFLPKQI  319 (568)
T ss_pred             EEccccc
Confidence            9999643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.91  E-value=5.8e-23  Score=159.14  Aligned_cols=209  Identities=11%  Similarity=0.128  Sum_probs=143.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .|..|...|.++++.|.|-+|++|+.|.+|++||+.+.... .+....+. .....|.+++|++.  |.+|++.+.....
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas-~~~fr~l~P~E~h~i~sl~ys~T--g~~iLvvsg~aqa  238 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS-MRSFRQLQPCETHQINSLQYSVT--GDQILVVSGSAQA  238 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc-chhhhccCcccccccceeeecCC--CCeEEEEecCcce
Confidence            46778889999999999999999999999999999865321 12222222 23457999999999  8888888778889


Q ss_pred             EEEEeeeccCC-----CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           83 LLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        83 ~iwd~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      +|+|-....-.     -.+..-+...++|...+++.+|+|. +...+++++.||++++||+....     ...+.|... 
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~-~k~~FlT~s~DgtlRiWdv~~~k-----~q~qVik~k-  311 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD-NKEEFLTCSYDGTLRIWDVNNTK-----SQLQVIKTK-  311 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccC-cccceEEecCCCcEEEEecCCch-----hheeEEeec-
Confidence            99986532000     0011112334578899999999995 33458999999999999998631     112222211 


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC--ceEEEEEe
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD--EVYAVAWA  235 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~s  235 (240)
                          +.+.....+..++|+|++.     +||+|..|     |.|.+|+..........    .....|..  .|++|+||
T Consensus       312 ----~~~g~Rv~~tsC~~nrdg~-----~iAagc~D-----GSIQ~W~~~~~~v~p~~----~vk~AH~~g~~Itsi~FS  373 (641)
T KOG0772|consen  312 ----PAGGKRVPVTSCAWNRDGK-----LIAAGCLD-----GSIQIWDKGSRTVRPVM----KVKDAHLPGQDITSISFS  373 (641)
T ss_pred             ----cCCCcccCceeeecCCCcc-----hhhhcccC-----CceeeeecCCcccccce----EeeeccCCCCceeEEEec
Confidence                1112223345888999998     78888888     99999998543222111    12224655  89999999


Q ss_pred             cCCCC
Q 026295          236 LNIGR  240 (240)
Q Consensus       236 p~~~~  240 (240)
                      +||.+
T Consensus       374 ~dg~~  378 (641)
T KOG0772|consen  374 YDGNY  378 (641)
T ss_pred             cccch
Confidence            99863

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.91  E-value=8e-24  Score=155.85  Aligned_cols=165  Identities=19%  Similarity=0.242  Sum_probs=143.9

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +..++++|.|+.|+.|...||+|+.||.|+||.+.     ++.|++.|. .|+..|+++.|+.+  +..+++++.|.+++
T Consensus       259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~-----tG~ClRrFdrAHtkGvt~l~FSrD--~SqiLS~sfD~tvR  331 (508)
T KOG0275|consen  259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE-----TGQCLRRFDRAHTKGVTCLSFSRD--NSQILSASFDQTVR  331 (508)
T ss_pred             eeecccceEEEeecccHHHhhccCcCCcEEEEEEe-----cchHHHHhhhhhccCeeEEEEccC--cchhhcccccceEE
Confidence            55688899999999999999999999999999999     889999987 89999999999999  89999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +.-+..+       +++..|++|.+.|+...|.+  +|..+++++.||+|++|+..+      .++..+++......   
T Consensus       332 iHGlKSG-------K~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~Kt------teC~~Tfk~~~~d~---  393 (508)
T KOG0275|consen  332 IHGLKSG-------KCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKT------TECLSTFKPLGTDY---  393 (508)
T ss_pred             Eeccccc-------hhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcc------hhhhhhccCCCCcc---
Confidence            9999888       99999999999999999988  999999999999999999988      57777765543222   


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                           .++++..-|...+    .++++...     ++|.|-++..
T Consensus       394 -----~vnsv~~~PKnpe----h~iVCNrs-----ntv~imn~qG  424 (508)
T KOG0275|consen  394 -----PVNSVILLPKNPE----HFIVCNRS-----NTVYIMNMQG  424 (508)
T ss_pred             -----cceeEEEcCCCCc----eEEEEcCC-----CeEEEEeccc
Confidence                 2457777787753    67778777     8899888753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=164.31  Aligned_cols=172  Identities=13%  Similarity=0.197  Sum_probs=133.4

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|..+.||.++ +|++++.|.+||||++.     .-.++..|. |...|+||+|+|. +.++|++|+.|+.|+
T Consensus       364 ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~-----~~~CL~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvR  435 (712)
T KOG0283|consen  364 EFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPG-----RKECLKVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVR  435 (712)
T ss_pred             hhhccchhheecccccCC-eeEeccccccEEeecCC-----CcceeeEEe-cCCeeEEEEeccc-CCCcEeecccccceE
Confidence            377899999999999866 89999999999999998     557887775 9999999999997 578999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||++..        ..+.....-..-|++++|.|  +|++.++|+.+|.+++|+...      .++...+..+...-.. 
T Consensus       436 iWsI~d--------~~Vv~W~Dl~~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~------lk~~~~~~I~~~~~Kk-  498 (712)
T KOG0283|consen  436 LWSISD--------KKVVDWNDLRDLITAVCYSP--DGKGAVIGTFNGYCRFYDTEG------LKLVSDFHIRLHNKKK-  498 (712)
T ss_pred             EeecCc--------CeeEeehhhhhhheeEEecc--CCceEEEEEeccEEEEEEccC------CeEEEeeeEeeccCcc-
Confidence            999976        34444444558899999999  999999999999999999986      3444333322110000 


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      -.+. .|+.+.|.|....    .+++.+.|     ..|||||.+...
T Consensus       499 ~~~~-rITG~Q~~p~~~~----~vLVTSnD-----SrIRI~d~~~~~  535 (712)
T KOG0283|consen  499 KQGK-RITGLQFFPGDPD----EVLVTSND-----SRIRIYDGRDKD  535 (712)
T ss_pred             ccCc-eeeeeEecCCCCC----eEEEecCC-----CceEEEeccchh
Confidence            0011 3558999987752    56677777     999999996543

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=8.9e-23  Score=161.44  Aligned_cols=188  Identities=19%  Similarity=0.280  Sum_probs=149.1

Q ss_pred             hhcc-cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVAT-LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~-h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.. |...|-+++|+  +..+.+|+.|+.|..+|+....    .....+.+|...|+.++|+++  +.++++|+.|+.+
T Consensus       254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~----~~~~~~~~H~qeVCgLkws~d--~~~lASGgnDN~~  325 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ----HVVSTLQGHRQEVCGLKWSPD--GNQLASGGNDNVV  325 (484)
T ss_pred             cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch----hhhhhhhcccceeeeeEECCC--CCeeccCCCccce
Confidence            3555 88899999998  7789999999999999998431    122247899999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe--CCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|||....       .+...+..|...|..++|+|...+. ||+|+  .|++|++||..+      +..+..+... ..|
T Consensus       326 ~Iwd~~~~-------~p~~~~~~H~aAVKA~awcP~q~~l-LAsGGGs~D~~i~fwn~~~------g~~i~~vdtg-sQV  390 (484)
T KOG0305|consen  326 FIWDGLSP-------EPKFTFTEHTAAVKALAWCPWQSGL-LATGGGSADRCIKFWNTNT------GARIDSVDTG-SQV  390 (484)
T ss_pred             EeccCCCc-------cccEEEeccceeeeEeeeCCCccCc-eEEcCCCcccEEEEEEcCC------CcEecccccC-Cce
Confidence            99999655       7888999999999999999975555 88765  799999999987      5655554322 223


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          .+.|++...+    ++.+-+..+    +.|.||++.+.    .....+.   +|...|..+++|||+.
T Consensus       391 c----------sL~Wsk~~kE----i~sthG~s~----n~i~lw~~ps~----~~~~~l~---gH~~RVl~la~SPdg~  444 (484)
T KOG0305|consen  391 C----------SLIWSKKYKE----LLSTHGYSE----NQITLWKYPSM----KLVAELL---GHTSRVLYLALSPDGE  444 (484)
T ss_pred             e----------eEEEcCCCCE----EEEecCCCC----CcEEEEecccc----ceeeeec---CCcceeEEEEECCCCC
Confidence            3          8999999863    555444433    89999999873    2334444   6888999999999973

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.90  E-value=8.5e-23  Score=152.69  Aligned_cols=165  Identities=18%  Similarity=0.249  Sum_probs=141.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.++|.++.|++ ...+.+++.|.+|+.||+.     ++.++.++.+ ....+++.++|.  ..+|++|+.|..++
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle-----tg~~~~~~~~-~ksl~~i~~~~~--~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE-----TGGLKSTLTT-NKSLNCISYSPL--SKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecccceEEEEEee-----cccceeeeec-CcceeEeecccc--cceeeecCCCCcee
Confidence            3788999999999998 6689999999999999999     6677777765 567999999998  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||.+.+++.    ...+++.+|...|.++.|+|. +...|++++.|+++++||+|+.     ...+..+..|...+-  
T Consensus       326 l~DPR~~~gs----~v~~s~~gH~nwVssvkwsp~-~~~~~~S~S~D~t~klWDvRS~-----k~plydI~~h~DKvl--  393 (423)
T KOG0313|consen  326 LWDPRTGDGS----VVSQSLIGHKNWVSSVKWSPT-NEFQLVSGSYDNTVKLWDVRST-----KAPLYDIAGHNDKVL--  393 (423)
T ss_pred             ecCCCCCCCc----eeEEeeecchhhhhheecCCC-CceEEEEEecCCeEEEEEeccC-----CCcceeeccCCceEE--
Confidence            9999988653    567788999999999999994 3446899999999999999984     446667778877776  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                              ++.|+...      ++++|+.|     ++|+|+....
T Consensus       394 --------~vdW~~~~------~IvSGGaD-----~~l~i~~~~~  419 (423)
T KOG0313|consen  394 --------SVDWNEGG------LIVSGGAD-----NKLRIFKGSP  419 (423)
T ss_pred             --------EEeccCCc------eEEeccCc-----ceEEEecccc
Confidence                    89998776      69999999     9999998653

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.90  E-value=9.3e-23  Score=152.45  Aligned_cols=199  Identities=18%  Similarity=0.315  Sum_probs=149.7

Q ss_pred             hhcccccceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCC-----------CCcEEEEeEeeecCccEEEEEEcCCCCC
Q 026295            4 AVATLDKGTTSSSWNYCG--QRLATGSTDGTLSIFDSPDPS-----------SSSFTCNLKTKVHAGAILKVVWVPPEFG   70 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~-----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~   70 (240)
                      +..+|.+.++.++-++-+  .+.|+-+..|.|+||++....           ....+++.++.+|.+.=+.|+|||-..|
T Consensus       146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g  225 (440)
T KOG0302|consen  146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG  225 (440)
T ss_pred             cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence            455688888888888755  577888899999999985321           0144678888999999999999997444


Q ss_pred             CEEEEEecCCeEEEEEeeeccCCCcccEE-EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295           71 DAVACICSDGSLLLWEEIVEDAQPLQWKL-CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        71 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  149 (240)
                      . +++|.--+.|++|...++     .|+. ...|.+|+..|-.++|||..++ .|++|+.||+|+|||+|....   ..+
T Consensus       226 ~-LlsGDc~~~I~lw~~~~g-----~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~---~~~  295 (440)
T KOG0302|consen  226 R-LLSGDCVKGIHLWEPSTG-----SWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPK---KAA  295 (440)
T ss_pred             c-cccCccccceEeeeeccC-----ceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCc---cce
Confidence            4 677777778999998764     4543 3456679999999999997555 499999999999999997311   122


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                      +.. +.|...|          |.++|+-...     +||+|+.|     |+++|||++.-+.. +++..+.   .|..+|
T Consensus       296 ~~~-kAh~sDV----------NVISWnr~~~-----lLasG~Dd-----Gt~~iwDLR~~~~~-~pVA~fk---~Hk~pI  350 (440)
T KOG0302|consen  296 VST-KAHNSDV----------NVISWNRREP-----LLASGGDD-----GTLSIWDLRQFKSG-QPVATFK---YHKAPI  350 (440)
T ss_pred             eEe-eccCCce----------eeEEccCCcc-----eeeecCCC-----ceEEEEEhhhccCC-CcceeEE---eccCCe
Confidence            222 4454444          4999998876     89999988     99999999875544 4444444   577799


Q ss_pred             EEEEEecC
Q 026295          230 YAVAWALN  237 (240)
Q Consensus       230 ~~v~~sp~  237 (240)
                      ++|.|+|.
T Consensus       351 tsieW~p~  358 (440)
T KOG0302|consen  351 TSIEWHPH  358 (440)
T ss_pred             eEEEeccc
Confidence            99999985

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=1.6e-23  Score=155.86  Aligned_cols=193  Identities=19%  Similarity=0.275  Sum_probs=146.5

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .|.+|.+.|.|++=+|.. ..+|+|+.||.|+|||+.     ...++.+++.|.+.|..|++..    ..+++++.|.+|
T Consensus        61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnls-----qR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtv  131 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLS-----QRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTV  131 (433)
T ss_pred             hccccccccchhhcCcchhhhhhccccCceEEEEehh-----hhhhhheeecccCceeeEEecc----cceEEecCCcce
Confidence            477899999999999987 899999999999999999     6678999999999999999954    347788889999


Q ss_pred             EEEEeeeccC--------------------------CCccc-----EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295           83 LLWEEIVEDA--------------------------QPLQW-----KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG  131 (240)
Q Consensus        83 ~iwd~~~~~~--------------------------~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  131 (240)
                      +.|-+.....                          +-.-|     .++..+.-....|.++.|+|.+. .+|+++..|+
T Consensus       132 K~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET-sILas~~sDr  210 (433)
T KOG0268|consen  132 KQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVET-SILASCASDR  210 (433)
T ss_pred             eeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcc-hheeeeccCC
Confidence            9997432100                          00111     23444444556788999988533 3588888999


Q ss_pred             cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                      .|.+||+++..++.  +.+..+..               |.++|+|...     .|++|..|     ..++.||++.   
T Consensus       211 sIvLyD~R~~~Pl~--KVi~~mRT---------------N~IswnPeaf-----nF~~a~ED-----~nlY~~DmR~---  260 (433)
T KOG0268|consen  211 SIVLYDLRQASPLK--KVILTMRT---------------NTICWNPEAF-----NFVAANED-----HNLYTYDMRN---  260 (433)
T ss_pred             ceEEEecccCCccc--eeeeeccc---------------cceecCcccc-----ceeecccc-----ccceehhhhh---
Confidence            99999999864442  22222211               3899999665     68888888     9999999876   


Q ss_pred             CcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          212 RWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       212 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                         +...+..+.+|.++|.+|+|||.|.
T Consensus       261 ---l~~p~~v~~dhvsAV~dVdfsptG~  285 (433)
T KOG0268|consen  261 ---LSRPLNVHKDHVSAVMDVDFSPTGQ  285 (433)
T ss_pred             ---hcccchhhcccceeEEEeccCCCcc
Confidence               3344566779999999999999873

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=152.85  Aligned_cols=196  Identities=14%  Similarity=0.191  Sum_probs=146.4

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      |.+-.+.|+.+.|.++++.+++++.|+.+++|++.     ..+...++.+|++.|+++.|...  ...+++++.|.+|++
T Consensus       215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-----~~r~~~TLsGHtdkVt~ak~~~~--~~~vVsgs~DRtiK~  287 (459)
T KOG0288|consen  215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-----SLRLRHTLSGHTDKVTAAKFKLS--HSRVVSGSADRTIKL  287 (459)
T ss_pred             hhccCCCcceeeecCCCceEEeecCCCceeeeecc-----chhhhhhhcccccceeeehhhcc--ccceeeccccchhhh
Confidence            45555679999999999999999999999999998     67888999999999999998665  344667777777777


Q ss_pred             EEeeeccCC--------------------------------CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCc
Q 026295           85 WEEIVEDAQ--------------------------------PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH  132 (240)
Q Consensus        85 wd~~~~~~~--------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  132 (240)
                      ||+...--.                                ...-.+......+ +.|+++..++  ++..+++++.|.+
T Consensus       288 WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~--~g~~lLsssRDdt  364 (459)
T KOG0288|consen  288 WDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSM--DGLELLSSSRDDT  364 (459)
T ss_pred             hhhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecC-cceeeEeecc--CCeEEeeecCCCc
Confidence            765432000                                0000233334333 5889999988  9999999999999


Q ss_pred             EEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          133 VKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       133 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                      +.+.|+++      .+..+.+......      ..+..+.+.|+|++.     |+|+|++|     |.|+||++.+++.+
T Consensus       365 l~viDlRt------~eI~~~~sA~g~k------~asDwtrvvfSpd~~-----YvaAGS~d-----gsv~iW~v~tgKlE  422 (459)
T KOG0288|consen  365 LKVIDLRT------KEIRQTFSAEGFK------CASDWTRVVFSPDGS-----YVAAGSAD-----GSVYIWSVFTGKLE  422 (459)
T ss_pred             eeeeeccc------ccEEEEeeccccc------cccccceeEECCCCc-----eeeeccCC-----CcEEEEEccCceEE
Confidence            99999998      5666665433211      122345889999998     99999999     99999999998755


Q ss_pred             cceeEeeecCCCCCC-ceEEEEEecCC
Q 026295          213 WLPVAELALPEDRSD-EVYAVAWALNI  238 (240)
Q Consensus       213 ~~~~~~~~~~~~h~~-~v~~v~~sp~~  238 (240)
                      ..+    ..  .++. .|++++|+|.|
T Consensus       423 ~~l----~~--s~s~~aI~s~~W~~sG  443 (459)
T KOG0288|consen  423 KVL----SL--STSNAAITSLSWNPSG  443 (459)
T ss_pred             EEe----cc--CCCCcceEEEEEcCCC
Confidence            433    22  2333 79999999976

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.90  E-value=4.5e-24  Score=158.29  Aligned_cols=170  Identities=17%  Similarity=0.314  Sum_probs=128.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..|.|+.+  |...+++|..|.+|+|||..     ...++..+.+|++.|.++.|  +  ...+++|+.|.+|++||.++
T Consensus       198 kgVYClQY--DD~kiVSGlrDnTikiWD~n-----~~~c~~~L~GHtGSVLCLqy--d--~rviisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  198 KGVYCLQY--DDEKIVSGLRDNTIKIWDKN-----SLECLKILTGHTGSVLCLQY--D--ERVIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             CceEEEEe--cchhhhcccccCceEEeccc-----cHHHHHhhhcCCCcEEeeec--c--ceEEEecCCCceEEEEeccC
Confidence            46888875  46679999999999999998     77899999999999999999  2  46899999999999999987


Q ss_pred             ccCCCcccEEEEEee-------------------------------------------eccccEEeEEEeecCCCcEEEE
Q 026295           90 EDAQPLQWKLCKSFE-------------------------------------------STSTQVLDVQFGVSSTSLKLVA  126 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~-------------------------------------------~~~~~v~~~~~~~~~~~~~l~~  126 (240)
                      +       +++.++-                                           +|...|..+.|    +.+++++
T Consensus       267 g-------e~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf----d~kyIVs  335 (499)
T KOG0281|consen  267 G-------EPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF----DDKYIVS  335 (499)
T ss_pred             C-------chhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc----ccceEEE
Confidence            7       3333333                                           35555666666    3446777


Q ss_pred             EeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          127 AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       127 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      ++.|.+|++|++.+      .+.+..+.+|...|.          |+.+.       +.++++|++|     .+|++||.
T Consensus       336 ASgDRTikvW~~st------~efvRtl~gHkRGIA----------ClQYr-------~rlvVSGSSD-----ntIRlwdi  387 (499)
T KOG0281|consen  336 ASGDRTIKVWSTST------CEFVRTLNGHKRGIA----------CLQYR-------DRLVVSGSSD-----NTIRLWDI  387 (499)
T ss_pred             ecCCceEEEEeccc------eeeehhhhcccccce----------ehhcc-------CeEEEecCCC-----ceEEEEec
Confidence            77777777777666      677777777766555          55442       3378888888     99999999


Q ss_pred             ecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          207 DEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      ..+.+...+       +||++-|+++.|..
T Consensus       388 ~~G~cLRvL-------eGHEeLvRciRFd~  410 (499)
T KOG0281|consen  388 ECGACLRVL-------EGHEELVRCIRFDN  410 (499)
T ss_pred             cccHHHHHH-------hchHHhhhheeecC
Confidence            988755433       36777999998864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.90  E-value=9.6e-22  Score=150.27  Aligned_cols=203  Identities=17%  Similarity=0.164  Sum_probs=152.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|...+.+++.++||++||+|+.|..|.||+..     +.+.+..+++|.+.|.+++|-..  ...+++++.|++|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~-----t~ehv~~~~ghr~~V~~L~fr~g--t~~lys~s~Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCD-----TLEHVKVFKGHRGAVSSLAFRKG--TSELYSASADRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCc-----ccchhhcccccccceeeeeeecC--ccceeeeecCCceEEEe
Confidence            677889999999999999999999999999999     78889999999999999999666  67788999999999998


Q ss_pred             eeecc------------------------------CCCcccEE----EEEeeeccccEEeEEEeecCCCcEEEEEeCCCc
Q 026295           87 EIVED------------------------------AQPLQWKL----CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH  132 (240)
Q Consensus        87 ~~~~~------------------------------~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~  132 (240)
                      +....                              ....-|+.    ...+.++...+.+++|-.   ...+++|+.||.
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In---~~HfvsGSdnG~  349 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN---DEHFVSGSDNGS  349 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec---ccceeeccCCce
Confidence            65320                              00111221    122445667888999864   456999999999


Q ss_pred             EEEEEecCcccccceeEEeeeecccceeec--cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          133 VKVYELLDPLILKNWQLQAEFQNAIDSVTM--FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       133 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      |.+|++.+      ..++............  .-+...-+++++-.|...     ++|+|+.+     |.|++|....+.
T Consensus       350 IaLWs~~K------Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-----L~asGS~~-----G~vrLW~i~~g~  413 (479)
T KOG0299|consen  350 IALWSLLK------KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-----LLASGSWS-----GCVRLWKIEDGL  413 (479)
T ss_pred             EEEeeecc------cCceeEeeccccccCCccccccccceeeeEecccCc-----eEEecCCC-----CceEEEEecCCc
Confidence            99999976      3333333221111110  000112445888889887     99999999     999999999987


Q ss_pred             CCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          211 NRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ....+..+++ ..|   .|++|+|++++-
T Consensus       414 r~i~~l~~ls-~~G---fVNsl~f~~sgk  438 (479)
T KOG0299|consen  414 RAINLLYSLS-LVG---FVNSLAFSNSGK  438 (479)
T ss_pred             cccceeeecc-ccc---EEEEEEEccCCC
Confidence            7777777775 334   899999999974

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.90  E-value=4e-22  Score=162.54  Aligned_cols=178  Identities=17%  Similarity=0.195  Sum_probs=153.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|.+++|..-+.+|++|+.|.+++|||..     ++++...+.+|.+.|.++...    ..++++|+.|.+|+
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-----sg~C~~~l~gh~stv~~~~~~----~~~~~sgs~D~tVk  314 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-----TGECTHSLQGHTSSVRCLTID----PFLLVSGSRDNTVK  314 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-----CCcEEEEecCCCceEEEEEcc----CceEeeccCCceEE
Confidence            478999999999998878999999999999999988     789999999999999999873    45677889999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +|+++++       .++..+.+|...|.++..    ++.++++|+.|++|++||+.+      +++...+.+|...|.  
T Consensus       315 VW~v~n~-------~~l~l~~~h~~~V~~v~~----~~~~lvsgs~d~~v~VW~~~~------~~cl~sl~gH~~~V~--  375 (537)
T KOG0274|consen  315 VWDVTNG-------ACLNLLRGHTGPVNCVQL----DEPLLVSGSYDGTVKVWDPRT------GKCLKSLSGHTGRVY--  375 (537)
T ss_pred             EEeccCc-------ceEEEeccccccEEEEEe----cCCEEEEEecCceEEEEEhhh------ceeeeeecCCcceEE--
Confidence            9999987       889999999999999998    577899999999999999997      899999999999888  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-CCCcceeEeeecCCCCCCceEEEEEe
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-HNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                              ++.+.+. .     .+++|+.|     ++|++||+++. ++...+    .   +|.+-|..+.+.
T Consensus       376 --------sl~~~~~-~-----~~~Sgs~D-----~~IkvWdl~~~~~c~~tl----~---~h~~~v~~l~~~  422 (537)
T KOG0274|consen  376 --------SLIVDSE-N-----RLLSGSLD-----TTIKVWDLRTKRKCIHTL----Q---GHTSLVSSLLLR  422 (537)
T ss_pred             --------EEEecCc-c-----eEEeeeec-----cceEeecCCchhhhhhhh----c---CCcccccccccc
Confidence                    8877765 3     79999999     99999999987 433322    2   566666665553

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=7.1e-22  Score=143.69  Aligned_cols=200  Identities=17%  Similarity=0.306  Sum_probs=152.5

Q ss_pred             hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC--CcE-----EEE---eEeeecCccEEEEEEcCCCCCCEE
Q 026295            5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSS--SSF-----TCN---LKTKVHAGAILKVVWVPPEFGDAV   73 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~-----~~~---~~~~~h~~~v~~~~~~~~~~~~~l   73 (240)
                      ...|.+.|+++.+.+ .|+++++|+.||.|.|||++....  ...     .++   ..-.+|.-.|.++.|-|- +.-+|
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~-DtGmF  117 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI-DTGMF  117 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee-cCcee
Confidence            456999999999998 789999999999999999975431  011     111   011267778999999887 24578


Q ss_pred             EEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           74 ACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        74 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      .+++.|.++++||..+.       +....|+- +..|.+-+++|... ..++|+|..+-+|++.|+.+      +...+.
T Consensus       118 tssSFDhtlKVWDtnTl-------Q~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S------Gs~sH~  183 (397)
T KOG4283|consen  118 TSSSFDHTLKVWDTNTL-------QEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS------GSFSHT  183 (397)
T ss_pred             ecccccceEEEeecccc-------eeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccC------Ccceee
Confidence            88999999999999876       55555553 46788888888544 34678888999999999998      788899


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc--------ceeEeeecCCC
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW--------LPVAELALPED  224 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~--------~~~~~~~~~~~  224 (240)
                      +.+|...|-          +|.|+|...    .+|++|+.|     |.|++||++....-+        +....++....
T Consensus       184 LsGHr~~vl----------aV~Wsp~~e----~vLatgsaD-----g~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~a  244 (397)
T KOG4283|consen  184 LSGHRDGVL----------AVEWSPSSE----WVLATGSAD-----GAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTA  244 (397)
T ss_pred             eccccCceE----------EEEeccCce----eEEEecCCC-----ceEEEEEeecccceeEEeecccCccCcccccccc
Confidence            999988887          999999985    489999999     999999997652111        11111223345


Q ss_pred             CCCceEEEEEecCC
Q 026295          225 RSDEVYAVAWALNI  238 (240)
Q Consensus       225 h~~~v~~v~~sp~~  238 (240)
                      |.+.|+.++|..|+
T Consensus       245 h~gkvngla~tSd~  258 (397)
T KOG4283|consen  245 HYGKVNGLAWTSDA  258 (397)
T ss_pred             ccceeeeeeecccc
Confidence            88899999999886

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.5e-22  Score=146.10  Aligned_cols=210  Identities=16%  Similarity=0.187  Sum_probs=144.1

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC---------------------------------C-----
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS---------------------------------S-----   44 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~---------------------------------~-----   44 (240)
                      ..|++|.+.|++++|+.+|++|||++.|+.|+||++..-..                                 +     
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v  159 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV  159 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence            34789999999999999999999999999999999752100                                 0     


Q ss_pred             ---------------------------------------------------------cEEEEeEeeecCccEEEEEEcCC
Q 026295           45 ---------------------------------------------------------SFTCNLKTKVHAGAILKVVWVPP   67 (240)
Q Consensus        45 ---------------------------------------------------------~~~~~~~~~~h~~~v~~~~~~~~   67 (240)
                                                                               .++.+.++......-+..+.+|+
T Consensus       160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~  239 (420)
T KOG2096|consen  160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPD  239 (420)
T ss_pred             EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCC
Confidence                                                                     00000001111111234567788


Q ss_pred             CCCCEEEEEecCCeEEEEEeeec-cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccc
Q 026295           68 EFGDAVACICSDGSLLLWEEIVE-DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN  146 (240)
Q Consensus        68 ~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~  146 (240)
                        |+++++++.-.-|++|.+--. ++...+...+..+++|...|..++|+|  +...+++++.||++++||..-....  
T Consensus       240 --GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn--~S~r~vtvSkDG~wriwdtdVrY~~--  313 (420)
T KOG2096|consen  240 --GRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN--SSTRAVTVSKDGKWRIWDTDVRYEA--  313 (420)
T ss_pred             --CcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC--CcceeEEEecCCcEEEeeccceEec--
Confidence              888888888888999986432 333344456778889999999999999  9999999999999999998642111  


Q ss_pred             eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCC
Q 026295          147 WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRS  226 (240)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~  226 (240)
                      .+-...++....+....+...|   .++.+|.+.     .||.++.      ..+++|..++++..-.+ +     .-|+
T Consensus       314 ~qDpk~Lk~g~~pl~aag~~p~---RL~lsP~g~-----~lA~s~g------s~l~~~~se~g~~~~~~-e-----~~h~  373 (420)
T KOG2096|consen  314 GQDPKILKEGSAPLHAAGSEPV---RLELSPSGD-----SLAVSFG------SDLKVFASEDGKDYPEL-E-----DIHS  373 (420)
T ss_pred             CCCchHhhcCCcchhhcCCCce---EEEeCCCCc-----EEEeecC------CceEEEEcccCccchhH-H-----Hhhc
Confidence            1111122222223333344444   789999998     6777765      67999998876533222 1     1388


Q ss_pred             CceEEEEEecCC
Q 026295          227 DEVYAVAWALNI  238 (240)
Q Consensus       227 ~~v~~v~~sp~~  238 (240)
                      ..|.+++|+|+|
T Consensus       374 ~~Is~is~~~~g  385 (420)
T KOG2096|consen  374 TTISSISYSSDG  385 (420)
T ss_pred             CceeeEEecCCC
Confidence            899999999987

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8.5e-23  Score=154.38  Aligned_cols=174  Identities=15%  Similarity=0.255  Sum_probs=127.0

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+++.+|..+|..+.||||.++|++|+.|..+++||..     ++.+...+. +|...+.+.+|.|+  |..+++|+.|+
T Consensus       262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~-----tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V~Gs~dr  334 (519)
T KOG0293|consen  262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVD-----TGDLRHLYPSGLGFSVSSCAWCPD--GFRFVTGSPDR  334 (519)
T ss_pred             eeeeecccCceEEEEECCCCCeEEecCchHheeeccCC-----cchhhhhcccCcCCCcceeEEccC--CceeEecCCCC
Confidence            46688999999999999999999999999999999998     666655554 34577999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEE--------------------------E----------eeeccccEEeEEEee-------
Q 026295           81 SLLLWEEIVEDAQPLQWKLCK--------------------------S----------FESTSTQVLDVQFGV-------  117 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~--------------------------~----------~~~~~~~v~~~~~~~-------  117 (240)
                      .+..||+.....  ..|+-++                          -          +.....+|++++.|.       
T Consensus       335 ~i~~wdlDgn~~--~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv  412 (519)
T KOG0293|consen  335 TIIMWDLDGNIL--GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALV  412 (519)
T ss_pred             cEEEecCCcchh--hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEE
Confidence            999999754311  0000000                          0          000112333333322       


Q ss_pred             ------------------------------------cCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295          118 ------------------------------------SSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus       118 ------------------------------------~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                                                          -.+..++++|+.|++|+||+..+      +.++..+.+|...+.
T Consensus       413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~s------gkll~~LsGHs~~vN  486 (519)
T KOG0293|consen  413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRIS------GKLLAVLSGHSKTVN  486 (519)
T ss_pred             EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccC------CceeEeecCCcceee
Confidence                                                01235778888888888888776      677888888776554


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                                +|+|+|...+    +||+|+.|     |+||||.....
T Consensus       487 ----------cVswNP~~p~----m~ASasDD-----gtIRIWg~~~~  515 (519)
T KOG0293|consen  487 ----------CVSWNPADPE----MFASASDD-----GTIRIWGPSDN  515 (519)
T ss_pred             ----------EEecCCCCHH----HhhccCCC-----CeEEEecCCcc
Confidence                      9999999864    89999988     99999987643

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.89  E-value=4.4e-22  Score=158.97  Aligned_cols=206  Identities=13%  Similarity=0.210  Sum_probs=161.2

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      ++||.+|.-.|.+++.+|+|+++|++....     .|++|+..     ++.....+.+|.-.|+.|+|||+  +.+|++.
T Consensus       518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~-----~W~~~~~L~~HsLTVT~l~FSpd--g~~LLsv  590 (764)
T KOG1063|consen  518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA-----NWLQVQELEGHSLTVTRLAFSPD--GRYLLSV  590 (764)
T ss_pred             hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc-----chhhhheecccceEEEEEEECCC--CcEEEEe
Confidence            367999999999999999999999997653     48899998     78888889999999999999999  9999999


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee--e
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF--Q  154 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~--~  154 (240)
                      +.|.++.+|........+.+   ....+.|+..|+...|+|  ++.++++++.|.+|++|.......    +.+..+  .
T Consensus       591 sRDRt~sl~~~~~~~~~e~~---fa~~k~HtRIIWdcsW~p--de~~FaTaSRDK~VkVW~~~~~~d----~~i~~~a~~  661 (764)
T KOG1063|consen  591 SRDRTVSLYEVQEDIKDEFR---FACLKAHTRIIWDCSWSP--DEKYFATASRDKKVKVWEEPDLRD----KYISRFACL  661 (764)
T ss_pred             ecCceEEeeeeecccchhhh---hccccccceEEEEcccCc--ccceeEEecCCceEEEEeccCchh----hhhhhhchh
Confidence            99999999998544322222   233677999999999999  999999999999999999876311    111111  1


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-----CCCcceeEeeecCCCCCCce
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-----HNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-----~~~~~~~~~~~~~~~h~~~v  229 (240)
                      ....+++          +++|.|.-...+..++++|...     |.|.+|.....     ...+.+...+..+.+|.+.|
T Consensus       662 ~~~~aVT----------Av~~~~~~~~e~~~~vavGle~-----GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV  726 (764)
T KOG1063|consen  662 KFSLAVT----------AVAYLPVDHNEKGDVVAVGLEK-----GEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAV  726 (764)
T ss_pred             ccCCcee----------eEEeeccccccccceEEEEecc-----cEEEEEecccccccccceeeeeccccccccChHHhh
Confidence            2233344          8899887665556688999988     99999997622     22344455566677899999


Q ss_pred             EEEEEecCC
Q 026295          230 YAVAWALNI  238 (240)
Q Consensus       230 ~~v~~sp~~  238 (240)
                      +-+.|+|..
T Consensus       727 ~rl~w~p~~  735 (764)
T KOG1063|consen  727 NRLLWRPTC  735 (764)
T ss_pred             heeEecccc
Confidence            999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.2e-22  Score=161.21  Aligned_cols=196  Identities=11%  Similarity=0.193  Sum_probs=160.2

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEE-cCCCCCCEEEEEecCCe
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVW-VPPEFGDAVACICSDGS   81 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~~l~s~~~d~~   81 (240)
                      .+++.|.+.|+.++...+++.|+++|.|-+|++|+....   ..-+..++..|+..|.++++ .++  ..++++|+.|+.
T Consensus        67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~---~~~c~stir~H~DYVkcla~~ak~--~~lvaSgGLD~~  141 (735)
T KOG0308|consen   67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKD---NTFCMSTIRTHKDYVKCLAYIAKN--NELVASGGLDRK  141 (735)
T ss_pred             hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccC---cchhHhhhhcccchheeeeecccC--ceeEEecCCCcc
Confidence            457889999999999999999999999999999999743   22477888899999999999 555  789999999999


Q ss_pred             EEEEEeeeccCC-CcccE--EEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           82 LLLWEEIVEDAQ-PLQWK--LCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        82 v~iwd~~~~~~~-~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      |.+||+..+... ...+.  ...... ++...|.+++-++  +|..+++|+..+.+++||.++      .+.+..+.+|.
T Consensus       142 IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~--t~t~ivsGgtek~lr~wDprt------~~kimkLrGHT  213 (735)
T KOG0308|consen  142 IFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRT------CKKIMKLRGHT  213 (735)
T ss_pred             EEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC--cceEEEecCcccceEEecccc------ccceeeeeccc
Confidence            999999866320 00011  112222 6778999999988  898999999999999999998      67777888999


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..|+          .+-.++++.     .++++++|     |+|++||+....+..++    .   -|...|+++.-+|+
T Consensus       214 dNVr----------~ll~~dDGt-----~~ls~sSD-----gtIrlWdLgqQrCl~T~----~---vH~e~VWaL~~~~s  266 (735)
T KOG0308|consen  214 DNVR----------VLLVNDDGT-----RLLSASSD-----GTIRLWDLGQQRCLATY----I---VHKEGVWALQSSPS  266 (735)
T ss_pred             cceE----------EEEEcCCCC-----eEeecCCC-----ceEEeeeccccceeeeE----E---eccCceEEEeeCCC
Confidence            9988          899999998     79999999     99999999876555443    2   26668999999887


Q ss_pred             C
Q 026295          238 I  238 (240)
Q Consensus       238 ~  238 (240)
                      .
T Consensus       267 f  267 (735)
T KOG0308|consen  267 F  267 (735)
T ss_pred             c
Confidence            4

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.89  E-value=4.5e-22  Score=160.28  Aligned_cols=161  Identities=19%  Similarity=0.224  Sum_probs=150.7

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      -..++.|.|+++||||++||.+--|.+|+||-++     +.+...++.||.-||.++..+|+  +.++++|+.|..|++|
T Consensus       505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD-----tlKFflsLYGHkLPV~smDIS~D--SklivTgSADKnVKiW  577 (888)
T KOG0306|consen  505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD-----TLKFFLSLYGHKLPVLSMDISPD--SKLIVTGSADKNVKIW  577 (888)
T ss_pred             EeccccEEEEEEcCCCcEEEEEeccCeEEEEEec-----ceeeeeeecccccceeEEeccCC--cCeEEeccCCCceEEe
Confidence            3467789999999999999999999999999999     88888899999999999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      -+.-+       .|-..+-.|...|.++.|.|  ....+.+++.|+.|+-||-..      +++++.+.+|...+.    
T Consensus       578 GLdFG-------DCHKS~fAHdDSvm~V~F~P--~~~~FFt~gKD~kvKqWDg~k------Fe~iq~L~~H~~ev~----  638 (888)
T KOG0306|consen  578 GLDFG-------DCHKSFFAHDDSVMSVQFLP--KTHLFFTCGKDGKVKQWDGEK------FEEIQKLDGHHSEVW----  638 (888)
T ss_pred             ccccc-------hhhhhhhcccCceeEEEEcc--cceeEEEecCcceEEeechhh------hhhheeeccchheee----
Confidence            99888       89999999999999999999  888899999999999999887      899999999998888    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                            +++-.|+|.     ++++++.|     .+||+|....
T Consensus       639 ------cLav~~~G~-----~vvs~shD-----~sIRlwE~td  665 (888)
T KOG0306|consen  639 ------CLAVSPNGS-----FVVSSSHD-----KSIRLWERTD  665 (888)
T ss_pred             ------eeEEcCCCC-----eEEeccCC-----ceeEeeeccC
Confidence                  999999998     89999999     9999998654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.2e-20  Score=137.96  Aligned_cols=214  Identities=22%  Similarity=0.353  Sum_probs=161.6

Q ss_pred             hcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCC---C-CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            5 VATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPS---S-SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~---~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      -+.|++.|..+.|.+  -|+.+|+|+.|++++||.-....   . ..|....++......|++++|.|..-|-.+++++.
T Consensus        55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a  134 (361)
T KOG2445|consen   55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA  134 (361)
T ss_pred             EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence            467999999999976  58999999999999999863211   1 16677788888889999999999877889999999


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEee-------eccccEEeEEEeecCCC-cEEEEEeCC-----CcEEEEEecCccccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFE-------STSTQVLDVQFGVSSTS-LKLVAAYSD-----GHVKVYELLDPLILK  145 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~-~~l~~~~~d-----g~v~iw~~~~~~~~~  145 (240)
                      ||.+|||+.... .+...|....+++       .+.....|+.|+|.+-. .+|++|+.+     +.++||....  ..+
T Consensus       135 DG~lRIYEA~dp-~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e--~~r  211 (361)
T KOG2445|consen  135 DGILRIYEAPDP-MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE--NGR  211 (361)
T ss_pred             CcEEEEEecCCc-cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC--Ccc
Confidence            999999997533 1235566666665       46678889999985433 356666654     4899998764  344


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-------------CCC
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-------------HNR  212 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-------------~~~  212 (240)
                      +|..+.++..+..+|+          +++|.|+... ...+||+|+.|     | |+||++...             ...
T Consensus       212 Kw~kva~L~d~~dpI~----------di~wAPn~Gr-~y~~lAvA~kD-----g-v~I~~v~~~~s~i~~ee~~~~~~~~  274 (361)
T KOG2445|consen  212 KWLKVAELPDHTDPIR----------DISWAPNIGR-SYHLLAVATKD-----G-VRIFKVKVARSAIEEEEVLAPDLMT  274 (361)
T ss_pred             eeeeehhcCCCCCcce----------eeeeccccCC-ceeeEEEeecC-----c-EEEEEEeeccchhhhhcccCCCCcc
Confidence            6788888888888887          9999998763 24489999998     8 999998731             111


Q ss_pred             cceeEeeecCCCCCCceEEEEEecCC
Q 026295          213 WLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ...++.+..+.+|.+.|+.+.|+=.|
T Consensus       275 ~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  275 DLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             ccceEEeeeccCCCCceEEEEEeeee
Confidence            12345555677899999999997544

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.89  E-value=6.2e-22  Score=148.08  Aligned_cols=172  Identities=18%  Similarity=0.320  Sum_probs=138.3

Q ss_pred             hcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEE-EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            5 VATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTC-NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +..|.+.=..++|||-. ..|++|.--+.|++|.....   .|+. ...+.+|+..|-.|+|||.. ...|++|+.||+|
T Consensus       207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g---~W~vd~~Pf~gH~~SVEDLqWSptE-~~vfaScS~DgsI  282 (440)
T KOG0302|consen  207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG---SWKVDQRPFTGHTKSVEDLQWSPTE-DGVFASCSCDGSI  282 (440)
T ss_pred             ecccCccceeeecccccccccccCccccceEeeeeccC---ceeecCccccccccchhhhccCCcc-CceEEeeecCceE
Confidence            45677778899999932 46889988899999998753   4542 23456799999999999983 5689999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      +|||++.+..     +.....+.|.+.|+.|.|+.  .-.+||+|+.||+++|||+++-.   ..+++..++-|..+|. 
T Consensus       283 rIWDiRs~~~-----~~~~~~kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~---~~~pVA~fk~Hk~pIt-  351 (440)
T KOG0302|consen  283 RIWDIRSGPK-----KAAVSTKAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFK---SGQPVATFKYHKAPIT-  351 (440)
T ss_pred             EEEEecCCCc-----cceeEeeccCCceeeEEccC--CcceeeecCCCceEEEEEhhhcc---CCCcceeEEeccCCee-
Confidence            9999997632     23333478889999999976  55589999999999999999742   2477888888888888 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                               +|.|+|....    .|++++.|     ..|.|||+...
T Consensus       352 ---------sieW~p~e~s----~iaasg~D-----~QitiWDlsvE  380 (440)
T KOG0302|consen  352 ---------SIEWHPHEDS----VIAASGED-----NQITIWDLSVE  380 (440)
T ss_pred             ---------EEEeccccCc----eEEeccCC-----CcEEEEEeecc
Confidence                     9999998753    78888888     99999999654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.88  E-value=1.6e-22  Score=155.29  Aligned_cols=169  Identities=18%  Similarity=0.282  Sum_probs=134.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +++.+|..+|..++|+.+|..|.+++.|+.|++||.+     +++++..+.. ...+++++|.|+. .+.|++|+.|+.|
T Consensus       252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-----TG~~~~~f~~-~~~~~cvkf~pd~-~n~fl~G~sd~ki  324 (503)
T KOG0282|consen  252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-----TGQVLSRFHL-DKVPTCVKFHPDN-QNIFLVGGSDKKI  324 (503)
T ss_pred             hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc-----cceEEEEEec-CCCceeeecCCCC-CcEEEEecCCCcE
Confidence            5678899999999999999999999999999999999     8899888874 5678899999982 3788999999999


Q ss_pred             EEEEeeeccC------------------C------------------------------------------CcccEE---
Q 026295           83 LLWEEIVEDA------------------Q------------------------------------------PLQWKL---   99 (240)
Q Consensus        83 ~iwd~~~~~~------------------~------------------------------------------~~~~~~---   99 (240)
                      +.||+++++-                  .                                          ...|..   
T Consensus       325 ~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs  404 (503)
T KOG0282|consen  325 RQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQS  404 (503)
T ss_pred             EEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhc
Confidence            9999775421                  0                                          000000   


Q ss_pred             ----E--------------EEeeecc--ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295          100 ----C--------------KSFESTS--TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus       100 ----~--------------~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                          +              ..|.+|.  +--..+.|||  +|.+|++|+.||.+.+||.++      ..++..++.|...
T Consensus       405 ~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp--DG~~l~SGdsdG~v~~wdwkt------~kl~~~lkah~~~  476 (503)
T KOG0282|consen  405 MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP--DGRTLCSGDSDGKVNFWDWKT------TKLVSKLKAHDQP  476 (503)
T ss_pred             cCceEEEEecccccccCHhhhhcceeccCceeeEEEcC--CCCeEEeecCCccEEEeechh------hhhhhccccCCcc
Confidence                0              0012221  2345689999  999999999999999999998      6777788888776


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                      +.          .+.|+|....    .+|+++.+     |.|++|+
T Consensus       477 ci----------~v~wHP~e~S----kvat~~w~-----G~Ikiwd  503 (503)
T KOG0282|consen  477 CI----------GVDWHPVEPS----KVATCGWD-----GLIKIWD  503 (503)
T ss_pred             eE----------EEEecCCCcc----eeEecccC-----ceeEecC
Confidence            66          8899998754    89999999     9999996

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=1.5e-20  Score=137.76  Aligned_cols=188  Identities=15%  Similarity=0.202  Sum_probs=141.9

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +.+|...|++++.+|-+..+++++.|++|++||++..     ++...+..  ..-...+|.|.  |.++|.+.....|++
T Consensus        96 F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~-----~cqg~l~~--~~~pi~AfDp~--GLifA~~~~~~~IkL  166 (311)
T KOG1446|consen   96 FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK-----KCQGLLNL--SGRPIAAFDPE--GLIFALANGSELIKL  166 (311)
T ss_pred             cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC-----CCceEEec--CCCcceeECCC--CcEEEEecCCCeEEE
Confidence            6789999999999999999999999999999999832     33333332  22335789999  999999987779999


Q ss_pred             EEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           85 WEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      ||++.-+.     .+..++.   ........+.|+|  +|++++.++..+.+.+.|.-.      +.....+..+...-.
T Consensus       167 yD~Rs~dk-----gPF~tf~i~~~~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~------G~~~~tfs~~~~~~~  233 (311)
T KOG1446|consen  167 YDLRSFDK-----GPFTTFSITDNDEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFD------GTVKSTFSGYPNAGN  233 (311)
T ss_pred             EEecccCC-----CCceeEccCCCCccceeeeEEcC--CCCEEEEEeCCCcEEEEEccC------CcEeeeEeeccCCCC
Confidence            99986533     3444443   3467789999999  999999999999999999876      566666665533210


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                          ..   -+.+|.|++.     ++++|+.|     |+|.+|++.++...    ..+.+.  +..++.++.|+|.
T Consensus       234 ----~~---~~a~ftPds~-----Fvl~gs~d-----g~i~vw~~~tg~~v----~~~~~~--~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  234 ----LP---LSATFTPDSK-----FVLSGSDD-----GTIHVWNLETGKKV----AVLRGP--NGGPVSCVRFNPR  286 (311)
T ss_pred             ----cc---eeEEECCCCc-----EEEEecCC-----CcEEEEEcCCCcEe----eEecCC--CCCCccccccCCc
Confidence                00   1677999997     77777777     99999999877533    222322  5668999999984

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=7.7e-22  Score=145.03  Aligned_cols=196  Identities=16%  Similarity=0.189  Sum_probs=162.7

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ++.+.+|.+.|..++.......+.+++.|.+.+||.++     ++.|+.++.+|.+.|++++|++.  +.++++++.|++
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~E-----sg~CL~~Y~GH~GSVNsikfh~s--~~L~lTaSGD~t  213 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLE-----SGACLATYTGHTGSVNSIKFHNS--GLLLLTASGDET  213 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeec-----cccceeeecccccceeeEEeccc--cceEEEccCCcc
Confidence            46688999999999998888899999999999999999     78999999999999999999998  999999999999


Q ss_pred             EEEEEeeec----c--C--------------------------CC-cccEEEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295           82 LLLWEEIVE----D--A--------------------------QP-LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        82 v~iwd~~~~----~--~--------------------------~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      -+||.....    .  .                          .+ ..-.++..+.+|...|.+..|-.  .|+.+++++
T Consensus       214 aHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~--gg~Q~vTaS  291 (481)
T KOG0300|consen  214 AHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA--GGQQMVTAS  291 (481)
T ss_pred             hHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc--Ccceeeeee
Confidence            999972110    0  0                          00 11235667788999999999977  899999999


Q ss_pred             CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          129 SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       129 ~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .|.+..+||.++      +++++.+.+|.....          .++-+|...     ++++++.|     .+.++||++.
T Consensus       292 WDRTAnlwDVEt------ge~v~~LtGHd~ELt----------HcstHptQr-----LVvTsSrD-----tTFRLWDFRe  345 (481)
T KOG0300|consen  292 WDRTANLWDVET------GEVVNILTGHDSELT----------HCSTHPTQR-----LVVTSSRD-----TTFRLWDFRE  345 (481)
T ss_pred             ccccceeeeecc------CceeccccCcchhcc----------ccccCCcce-----EEEEeccC-----ceeEeccchh
Confidence            999999999998      788888888877766          677788776     88888888     9999999985


Q ss_pred             CCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          209 AHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .-      ..+..+.||++.|+++.|.-|.
T Consensus       346 aI------~sV~VFQGHtdtVTS~vF~~dd  369 (481)
T KOG0300|consen  346 AI------QSVAVFQGHTDTVTSVVFNTDD  369 (481)
T ss_pred             hc------ceeeeecccccceeEEEEecCC
Confidence            32      2233455899999999998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.88  E-value=1.2e-21  Score=149.24  Aligned_cols=169  Identities=19%  Similarity=0.270  Sum_probs=141.5

Q ss_pred             cccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            6 ATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .+|+++|..++|+.. ...||+||.|.+|++||+.     ++++..++..|...|.++.|.|. .+.+|++|+.|++|.+
T Consensus       240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-----~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l  313 (463)
T KOG0270|consen  240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-----TGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVAL  313 (463)
T ss_pred             ccchHHHHHHHhccccceeEEecCCCceEEEEEcC-----CCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEe
Confidence            369999999999985 4699999999999999999     77889999999999999999887 4789999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      .|.+.....+..|+       ..+.|-.++|.|+ ....+++++.||+|+-+|+|.+     .+++.+++.|...|+   
T Consensus       314 ~D~R~~~~s~~~wk-------~~g~VEkv~w~~~-se~~f~~~tddG~v~~~D~R~~-----~~~vwt~~AHd~~IS---  377 (463)
T KOG0270|consen  314 KDCRDPSNSGKEWK-------FDGEVEKVAWDPH-SENSFFVSTDDGTVYYFDIRNP-----GKPVWTLKAHDDEIS---  377 (463)
T ss_pred             eeccCccccCceEE-------eccceEEEEecCC-CceeEEEecCCceEEeeecCCC-----CCceeEEEeccCCcc---
Confidence            99986433233333       3467888999985 3345788889999999999986     477888899999888   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                             ++++++....    +|++++.|     +.|++|++......
T Consensus       378 -------gl~~n~~~p~----~l~t~s~d-----~~Vklw~~~~~~~~  409 (463)
T KOG0270|consen  378 -------GLSVNIQTPG----LLSTASTD-----KVVKLWKFDVDSPK  409 (463)
T ss_pred             -------eEEecCCCCc----ceeecccc-----ceEEEEeecCCCCc
Confidence                   8999888754    89999999     99999999876543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.2e-21  Score=157.61  Aligned_cols=182  Identities=19%  Similarity=0.317  Sum_probs=146.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ++-.+++++|+.+|+++|.|+.|-.|++-+..     .......+++|+++|.+|.|+|.  +.+||+.+.||.|++|++
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-----D~s~~~~lrgh~apVl~l~~~p~--~~fLAvss~dG~v~iw~~  167 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-----DSSQEKVLRGHDAPVLQLSYDPK--GNFLAVSSCDGKVQIWDL  167 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEecc-----ccchheeecccCCceeeeeEcCC--CCEEEEEecCceEEEEEc
Confidence            44578999999999999999999999999998     44567788999999999999999  999999999999999999


Q ss_pred             eeccCCCcccEEEEEeee--------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           88 IVEDAQPLQWKLCKSFES--------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +.+       .+..++.+        ....+..++|+|  ++..++..+.|+.|++|+...      |+....+..... 
T Consensus       168 ~~~-------~~~~tl~~v~k~n~~~~s~i~~~~aW~P--k~g~la~~~~d~~Vkvy~r~~------we~~f~Lr~~~~-  231 (933)
T KOG1274|consen  168 QDG-------ILSKTLTGVDKDNEFILSRICTRLAWHP--KGGTLAVPPVDNTVKVYSRKG------WELQFKLRDKLS-  231 (933)
T ss_pred             ccc-------hhhhhcccCCccccccccceeeeeeecC--CCCeEEeeccCCeEEEEccCC------ceeheeeccccc-
Confidence            875       33333322        145678899999  877899999999999999987      777766653211 


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             ......++|+|+|.     |||+++.+     |.|.|||.++-..     .   .   ....|.+++|.|+++
T Consensus       232 -------ss~~~~~~wsPnG~-----YiAAs~~~-----g~I~vWnv~t~~~-----~---~---~~~~Vc~~aw~p~~n  283 (933)
T KOG1274|consen  232 -------SSKFSDLQWSPNGK-----YIAASTLD-----GQILVWNVDTHER-----H---E---FKRAVCCEAWKPNAN  283 (933)
T ss_pred             -------ccceEEEEEcCCCc-----EEeeeccC-----CcEEEEecccchh-----c---c---ccceeEEEecCCCCC
Confidence                   01123899999998     99999999     9999999987221     1   1   223899999999886


Q ss_pred             C
Q 026295          240 R  240 (240)
Q Consensus       240 ~  240 (240)
                      +
T Consensus       284 ~  284 (933)
T KOG1274|consen  284 A  284 (933)
T ss_pred             e
Confidence            3

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.88  E-value=1.6e-21  Score=151.25  Aligned_cols=190  Identities=14%  Similarity=0.187  Sum_probs=138.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEE---------EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFT---------CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~---------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .|++++|++.|..|++.+.....+|+|.++..  ..+         -....++|...+++.+|.|.. ...|++++.||+
T Consensus       216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~--~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~-k~~FlT~s~Dgt  292 (641)
T KOG0772|consen  216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFE--IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN-KEEFLTCSYDGT  292 (641)
T ss_pred             ccceeeecCCCCeEEEEecCcceeEEccCCce--eeeeeccchhhhhhhccCCceeeeeccccccCc-ccceEEecCCCc
Confidence            79999999999988888888899999987431  011         112346899999999999983 567889999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ++|||+....      +.+..|+     +.+-.++.++|+|  ++..+|+|+.||.|.+|+...-.-   ......-..|
T Consensus       293 lRiWdv~~~k------~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v---~p~~~vk~AH  361 (641)
T KOG0772|consen  293 LRIWDVNNTK------SQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTV---RPVMKVKDAH  361 (641)
T ss_pred             EEEEecCCch------hheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCccc---ccceEeeecc
Confidence            9999997642      2233332     3456788999999  999999999999999999864110   0111111234


Q ss_pred             cc--eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          157 ID--SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       157 ~~--~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      ..  .|+          +|.|++++.     +|++-+.|     +++++||++..+........|....    +-++++|
T Consensus       362 ~~g~~It----------si~FS~dg~-----~LlSRg~D-----~tLKvWDLrq~kkpL~~~tgL~t~~----~~tdc~F  417 (641)
T KOG0772|consen  362 LPGQDIT----------SISFSYDGN-----YLLSRGFD-----DTLKVWDLRQFKKPLNVRTGLPTPF----PGTDCCF  417 (641)
T ss_pred             CCCCcee----------EEEeccccc-----hhhhccCC-----CceeeeeccccccchhhhcCCCccC----CCCcccc
Confidence            33  444          999999998     89999999     9999999998654433333332221    5688999


Q ss_pred             ecCC
Q 026295          235 ALNI  238 (240)
Q Consensus       235 sp~~  238 (240)
                      |||.
T Consensus       418 SPd~  421 (641)
T KOG0772|consen  418 SPDD  421 (641)
T ss_pred             CCCc
Confidence            9985

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=143.97  Aligned_cols=198  Identities=11%  Similarity=0.072  Sum_probs=149.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----CCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP----SSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      .+..|-..|+|+.|+-||.+|+||+.||.|.+|.+..-    .....+++..+..|+-+|+++...+.....++++++.|
T Consensus       118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D  197 (476)
T KOG0646|consen  118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED  197 (476)
T ss_pred             HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence            46779999999999999999999999999999987421    11145678889999999999998765334689999999


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccc----------eeE
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN----------WQL  149 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~----------~~~  149 (240)
                      .++++||+..+       ..+.++.- ...+.+++.+|  ....+.+|+.+|.|.+.++..-.....          ...
T Consensus       198 ~t~k~wdlS~g-------~LLlti~f-p~si~av~lDp--ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~  267 (476)
T KOG0646|consen  198 RTIKLWDLSLG-------VLLLTITF-PSSIKAVALDP--AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQ  267 (476)
T ss_pred             ceEEEEEeccc-------eeeEEEec-CCcceeEEEcc--cccEEEecCCcceEEeeehhcCCcccccccccccccccce
Confidence            99999999887       77766654 37789999999  888999999999998888764221111          112


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                      +..+.+|..        ...+.|++.+-++.     +|++|+.|     |.|.|||..+.++...+..    ..+   +|
T Consensus       268 ~~~~~Gh~~--------~~~ITcLais~Dgt-----lLlSGd~d-----g~VcvWdi~S~Q~iRtl~~----~kg---pV  322 (476)
T KOG0646|consen  268 INVLVGHEN--------ESAITCLAISTDGT-----LLLSGDED-----GKVCVWDIYSKQCIRTLQT----SKG---PV  322 (476)
T ss_pred             eeeeccccC--------CcceeEEEEecCcc-----EEEeeCCC-----CCEEEEecchHHHHHHHhh----hcc---cc
Confidence            222333333        12445999999998     99999999     9999999988765544421    224   78


Q ss_pred             EEEEEec
Q 026295          230 YAVAWAL  236 (240)
Q Consensus       230 ~~v~~sp  236 (240)
                      +.+.+.|
T Consensus       323 tnL~i~~  329 (476)
T KOG0646|consen  323 TNLQINP  329 (476)
T ss_pred             ceeEeec
Confidence            8888744

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.86  E-value=1.8e-21  Score=142.51  Aligned_cols=170  Identities=16%  Similarity=0.216  Sum_probs=134.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ++|..|.+.|+++.|+|....|++|+.|++|++||+.+...  -+....+. ...+|.++.|.|.  |.+++.|..-..+
T Consensus       166 RTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~sa--KrA~K~~q-d~~~vrsiSfHPs--GefllvgTdHp~~  240 (430)
T KOG0640|consen  166 RTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSA--KRAFKVFQ-DTEPVRSISFHPS--GEFLLVGTDHPTL  240 (430)
T ss_pred             eehhhccCcccceeecchhheEEeccCCCeEEEEecccHHH--HHHHHHhh-ccceeeeEeecCC--CceEEEecCCCce
Confidence            45778999999999999999999999999999999986521  11122222 3568999999999  9999999988999


Q ss_pred             EEEEeeeccCCCcccEEEEEe---eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           83 LLWEEIVEDAQPLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ++||+.+-       ++...-   .+|+..|+++.+++  ++.+.++++.||.|++||--+      ..++.++....  
T Consensus       241 rlYdv~T~-------QcfvsanPd~qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS------~rCv~t~~~AH--  303 (430)
T KOG0640|consen  241 RLYDVNTY-------QCFVSANPDDQHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVS------NRCVRTIGNAH--  303 (430)
T ss_pred             eEEeccce-------eEeeecCcccccccceeEEEecC--CccEEEEeccCCcEEeecccc------HHHHHHHHhhc--
Confidence            99999764       444332   35889999999999  999999999999999999766      45555554321  


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                         .+...|   +..|..++.     ++++.+.|     ..|++|.+.++.
T Consensus       304 ---~gsevc---Sa~Ftkn~k-----yiLsSG~D-----S~vkLWEi~t~R  338 (430)
T KOG0640|consen  304 ---GGSEVC---SAVFTKNGK-----YILSSGKD-----STVKLWEISTGR  338 (430)
T ss_pred             ---CCceee---eEEEccCCe-----EEeecCCc-----ceeeeeeecCCc
Confidence               112223   677998887     99999999     999999997653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.2e-19  Score=132.65  Aligned_cols=112  Identities=15%  Similarity=0.244  Sum_probs=89.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ++.|.++.|+|.++.|++++.||++++|+...     ..+...+ .|..++.+.+|.+.   ..+++|+.||.|+.+|+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-----~~l~~~~-~~~~plL~c~F~d~---~~~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-----NSLKLKF-KHGAPLLDCAFADE---STIVTGGLDGQVRRYDLN   83 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccc-----hhhhhhe-ecCCceeeeeccCC---ceEEEeccCceEEEEEec
Confidence            56899999999999999999999999999983     3344444 48999999999664   668899999999999998


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      .+        ....+..|...|++|.+++  ....+++|+.|++|++||.+
T Consensus        84 ~~--------~~~~igth~~~i~ci~~~~--~~~~vIsgsWD~~ik~wD~R  124 (323)
T KOG1036|consen   84 TG--------NEDQIGTHDEGIRCIEYSY--EVGCVISGSWDKTIKFWDPR  124 (323)
T ss_pred             CC--------cceeeccCCCceEEEEeec--cCCeEEEcccCccEEEEecc
Confidence            75        3344556777888888876  55567777888888888776

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=5.5e-19  Score=124.48  Aligned_cols=198  Identities=14%  Similarity=0.207  Sum_probs=137.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------CCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP----------SSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~----------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ..+|++++|+|.|.+.|+|+..++.+|-....-          .++.......-+.|.+.|++.+|+|.  |+++++|+.
T Consensus        32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~--geliatgsn  109 (350)
T KOG0641|consen   32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC--GELIATGSN  109 (350)
T ss_pred             hhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc--cCeEEecCC
Confidence            348999999999999999999999998654210          11112223334568999999999999  999999999


Q ss_pred             CCeEEEEEeeeccCC--C-------------------------------------------cccEEEEEeeeccccEEeE
Q 026295           79 DGSLLLWEEIVEDAQ--P-------------------------------------------LQWKLCKSFESTSTQVLDV  113 (240)
Q Consensus        79 d~~v~iwd~~~~~~~--~-------------------------------------------~~~~~~~~~~~~~~~v~~~  113 (240)
                      |.+|++..+.....+  +                                           ...+.+..+.+|++-|.++
T Consensus       110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal  189 (350)
T KOG0641|consen  110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL  189 (350)
T ss_pred             CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence            999998765432110  0                                           1112233445566666554


Q ss_pred             EEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                       ++-  ++-.+++|+.|.+|++||++.+      .++..+...   ....|--...+.+|+..|.+.     +|++|-.|
T Consensus       190 -ysw--n~~m~~sgsqdktirfwdlrv~------~~v~~l~~~---~~~~glessavaav~vdpsgr-----ll~sg~~d  252 (350)
T KOG0641|consen  190 -YSW--NGAMFASGSQDKTIRFWDLRVN------SCVNTLDND---FHDGGLESSAVAAVAVDPSGR-----LLASGHAD  252 (350)
T ss_pred             -EEe--cCcEEEccCCCceEEEEeeecc------ceeeeccCc---ccCCCcccceeEEEEECCCcc-----eeeeccCC
Confidence             233  6778999999999999999973      444333221   111121233455899999987     89999888


Q ss_pred             CCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       194 d~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                           ....+||++.+...    ..+.   .|+..|++|.|||.
T Consensus       253 -----ssc~lydirg~r~i----q~f~---phsadir~vrfsp~  284 (350)
T KOG0641|consen  253 -----SSCMLYDIRGGRMI----QRFH---PHSADIRCVRFSPG  284 (350)
T ss_pred             -----CceEEEEeeCCcee----eeeC---CCccceeEEEeCCC
Confidence                 99999999886422    2222   58889999999995

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.86  E-value=4.4e-20  Score=131.55  Aligned_cols=163  Identities=13%  Similarity=0.219  Sum_probs=135.7

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+.+|.+.|..+-|....+.+++...|++||+||..     ++..++++.. ..+|+++..+++  |+++.++ ..+.|
T Consensus       137 ~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r-----Tgt~v~sL~~-~s~VtSlEvs~d--G~ilTia-~gssV  207 (334)
T KOG0278|consen  137 KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR-----TGTEVQSLEF-NSPVTSLEVSQD--GRILTIA-YGSSV  207 (334)
T ss_pred             hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec-----cCcEEEEEec-CCCCcceeeccC--CCEEEEe-cCcee
Confidence            3477899999999999988888888999999999999     7788888875 678999999999  9877665 45789


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~  161 (240)
                      ..||...-       .++..++.+ ..|.+...+|  +..++++|+.|..++.||..++      +.+-.+ ++|..+|.
T Consensus       208 ~Fwdaksf-------~~lKs~k~P-~nV~SASL~P--~k~~fVaGged~~~~kfDy~Tg------eEi~~~nkgh~gpVh  271 (334)
T KOG0278|consen  208 KFWDAKSF-------GLLKSYKMP-CNVESASLHP--KKEFFVAGGEDFKVYKFDYNTG------EEIGSYNKGHFGPVH  271 (334)
T ss_pred             EEeccccc-------cceeeccCc-cccccccccC--CCceEEecCcceEEEEEeccCC------ceeeecccCCCCceE
Confidence            99998664       566666543 6788899999  7789999999999999999984      333333 67888888


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                                +|.|+|++.     +.|+|+.|     |+||||.....+
T Consensus       272 ----------cVrFSPdGE-----~yAsGSED-----GTirlWQt~~~~  300 (334)
T KOG0278|consen  272 ----------CVRFSPDGE-----LYASGSED-----GTIRLWQTTPGK  300 (334)
T ss_pred             ----------EEEECCCCc-----eeeccCCC-----ceEEEEEecCCC
Confidence                      999999998     88999998     999999986654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.86  E-value=8.6e-20  Score=149.01  Aligned_cols=174  Identities=18%  Similarity=0.251  Sum_probs=147.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      +...+.+..|.  ..++++++.|++|++|+..     +...+.. +.+|.+.|.++++...  +.++++|+.|.++++||
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~-----~~~~i~~~l~GH~g~V~~l~~~~~--~~~lvsgS~D~t~rvWd  277 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLN-----NGYLILTRLVGHFGGVWGLAFPSG--GDKLVSGSTDKTERVWD  277 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecc-----cceEEEeeccCCCCCceeEEEecC--CCEEEEEecCCcEEeEe
Confidence            34567788877  6789999999999999998     5566666 9999999999999765  78999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      ..++       .+...+.+|...+.++..    ....+++|+.|.+|++|++.+      ..++..+.+|..+|.     
T Consensus       278 ~~sg-------~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n------~~~l~l~~~h~~~V~-----  335 (537)
T KOG0274|consen  278 CSTG-------ECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTN------GACLNLLRGHTGPVN-----  335 (537)
T ss_pred             cCCC-------cEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccC------cceEEEeccccccEE-----
Confidence            9877       999999999999999987    445688899999999999997      677888877888887     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                           ++..+  ..     ++++|+.|     ++|++|++.+.+    ....+.   +|+.+|+++.+.+
T Consensus       336 -----~v~~~--~~-----~lvsgs~d-----~~v~VW~~~~~~----cl~sl~---gH~~~V~sl~~~~  381 (537)
T KOG0274|consen  336 -----CVQLD--EP-----LLVSGSYD-----GTVKVWDPRTGK----CLKSLS---GHTGRVYSLIVDS  381 (537)
T ss_pred             -----EEEec--CC-----EEEEEecC-----ceEEEEEhhhce----eeeeec---CCcceEEEEEecC
Confidence                 88877  33     89999999     999999999654    333444   6888999998876

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=4.1e-20  Score=135.77  Aligned_cols=201  Identities=14%  Similarity=0.224  Sum_probs=156.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ..+.|+|.+|++++..+|.+-....|.||...+..  .++..++++.|...|+.|.|+|.  .+.|++++.|..-.+|..
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~--~w~~~htls~Hd~~vtgvdWap~--snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD--LWEPAHTLSEHDKIVTGVDWAPK--SNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCC--CceeceehhhhCcceeEEeecCC--CCceeEccCCCCcccccc
Confidence            45689999999999999999999999999987653  48899999999999999999999  999999999999999998


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      ..+    ..|++...+..+...++++.|+|  +.+.|++|+....|-||-++...+   |=....++..         ..
T Consensus        85 ~~~----~~WkptlvLlRiNrAAt~V~WsP--~enkFAVgSgar~isVcy~E~ENd---WWVsKhikkP---------ir  146 (361)
T KOG1523|consen   85 PSG----GTWKPTLVLLRINRAATCVKWSP--KENKFAVGSGARLISVCYYEQEND---WWVSKHIKKP---------IR  146 (361)
T ss_pred             CCC----CeeccceeEEEeccceeeEeecC--cCceEEeccCccEEEEEEEecccc---eehhhhhCCc---------cc
Confidence            544    68999999988889999999999  888999999999999998765221   3222222211         11


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-------CCCCcceeEee----ecCCCCCCceEEEEEec
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE-------AHNRWLPVAEL----ALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-------~~~~~~~~~~~----~~~~~h~~~v~~v~~sp  236 (240)
                      .++.++.|+|++.     +|++|+.|     ++.|||..--       ....|....++    .....-.++|..+.|+|
T Consensus       147 Stv~sldWhpnnV-----LlaaGs~D-----~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~  216 (361)
T KOG1523|consen  147 STVTSLDWHPNNV-----LLAAGSTD-----GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP  216 (361)
T ss_pred             cceeeeeccCCcc-----eecccccC-----cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence            3344999999998     89999999     9999997521       11122211111    11112445999999999


Q ss_pred             CCCC
Q 026295          237 NIGR  240 (240)
Q Consensus       237 ~~~~  240 (240)
                      +|.|
T Consensus       217 sG~~  220 (361)
T KOG1523|consen  217 SGNR  220 (361)
T ss_pred             CCCE
Confidence            9865

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=1.5e-19  Score=138.62  Aligned_cols=197  Identities=15%  Similarity=0.146  Sum_probs=157.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .+.|.+++-+|+|.+|+.|...|.|++|.+.     ++.++..+.+|=..|+++.|+.+  |.+|++++.||.|.+|.+.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWels-----sG~LL~v~~aHYQ~ITcL~fs~d--gs~iiTgskDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELS-----SGILLNVLSAHYQSITCLKFSDD--GSHIITGSKDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEec-----cccHHHHHHhhccceeEEEEeCC--CcEEEecCCCccEEEEEEE
Confidence            5689999999999999999899999999999     88899999999999999999999  9999999999999999976


Q ss_pred             eccCC--CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           89 VEDAQ--PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        89 ~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      ..-..  ...-+++..|..|.-.|+.+...+.....++++++.|.++++||+..      +.++..+.-. ..+.     
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~------g~LLlti~fp-~si~-----  221 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL------GVLLLTITFP-SSIK-----  221 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc------ceeeEEEecC-Ccce-----
Confidence            43111  11346788899999999999998743456799999999999999987      5666555322 2233     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc---------ceeEeeecCCCCCC--ceEEEEEe
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW---------LPVAELALPEDRSD--EVYAVAWA  235 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~---------~~~~~~~~~~~h~~--~v~~v~~s  235 (240)
                           ++..+|...     .+.+|+++     |.|.+.++..-....         ..-..+....||.+  +|+|++.+
T Consensus       222 -----av~lDpae~-----~~yiGt~~-----G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais  286 (476)
T KOG0646|consen  222 -----AVALDPAER-----VVYIGTEE-----GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS  286 (476)
T ss_pred             -----eEEEccccc-----EEEecCCc-----ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence                 889999887     89999999     999999875433110         11123344557888  99999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      -|+.
T Consensus       287 ~Dgt  290 (476)
T KOG0646|consen  287 TDGT  290 (476)
T ss_pred             cCcc
Confidence            9985

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=8e-21  Score=148.63  Aligned_cols=183  Identities=15%  Similarity=0.192  Sum_probs=136.6

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      ++.|.+|++.|+|+.|+.+|.+|++|+.|-.+.|||..     ..+++..+. +|.+.|.+++|.|.....++++|..|.
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-----~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk  117 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-----EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDK  117 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecch-----hcceeeeeecccccceeEEeeeccCCCeEEEeccCcc
Confidence            56799999999999999999999999999999999998     556666665 899999999999986678899999999


Q ss_pred             eEEEEEeeeccCCC---cccEEEEEeeeccccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCcccccc-eeEEeeeec
Q 026295           81 SLLLWEEIVEDAQP---LQWKLCKSFESTSTQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDPLILKN-WQLQAEFQN  155 (240)
Q Consensus        81 ~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~-~~~~~~~~~  155 (240)
                      .|+++|+....+.+   ..-...+.+..|...|..++-.|  ++ ..+.+++.||+++-+|++.+..-.. ..+...+..
T Consensus       118 ~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~n  195 (758)
T KOG1310|consen  118 LIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVN  195 (758)
T ss_pred             eEEEEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCccCCccccccHHHHH
Confidence            99999997421110   00134455667888899999888  66 6799999999999999997521110 001111100


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      ...       .+....++..+|....    +||+|++|     ...++||.+
T Consensus       196 y~~-------~lielk~ltisp~rp~----~laVGgsd-----pfarLYD~R  231 (758)
T KOG1310|consen  196 YNP-------QLIELKCLTISPSRPY----YLAVGGSD-----PFARLYDRR  231 (758)
T ss_pred             hch-------hhheeeeeeecCCCCc----eEEecCCC-----chhhhhhhh
Confidence            000       0011127888888854    99999999     999999943

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.85  E-value=2.3e-20  Score=142.78  Aligned_cols=199  Identities=14%  Similarity=0.162  Sum_probs=146.7

Q ss_pred             hcccccceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            5 VATLDKGTTSSSWNYCG--QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.+.++|++++|+|..  +++|+|..-|.|-+||+..... ...-+..+..|.++|.+|.|+|.. ...+++.+.||+|
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-d~d~v~~f~~hs~~Vs~l~F~P~n-~s~i~ssSyDGti  259 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-DKDGVYLFTPHSGPVSGLKFSPAN-TSQIYSSSYDGTI  259 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-ccCceEEeccCCccccceEecCCC-hhheeeeccCcee
Confidence            45678899999999965  5899999999999999951110 223345567899999999999983 4678888999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++-|++...     ++.+.........+..+.|+.  ....++.+..=|...+||++++..     ....+..|...|. 
T Consensus       260 R~~D~~~~i-----~e~v~s~~~d~~~fs~~d~~~--e~~~vl~~~~~G~f~~iD~R~~~s-----~~~~~~lh~kKI~-  326 (498)
T KOG4328|consen  260 RLQDFEGNI-----SEEVLSLDTDNIWFSSLDFSA--ESRSVLFGDNVGNFNVIDLRTDGS-----EYENLRLHKKKIT-  326 (498)
T ss_pred             eeeeecchh-----hHHHhhcCccceeeeeccccC--CCccEEEeecccceEEEEeecCCc-----cchhhhhhhcccc-
Confidence            999997642     133333433456677788876  566677777777899999998632     2223344544555 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc-eeEeeecCCCCCCceEEEEEecCCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL-PVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                               +|+++|....    +||||+-|     ++.+|||++.-..+.. .+..+    .|.-.|.++.|||++|+
T Consensus       327 ---------sv~~NP~~p~----~laT~s~D-----~T~kIWD~R~l~~K~sp~lst~----~HrrsV~sAyFSPs~gt  383 (498)
T KOG4328|consen  327 ---------SVALNPVCPW----FLATASLD-----QTAKIWDLRQLRGKASPFLSTL----PHRRSVNSAYFSPSGGT  383 (498)
T ss_pred             ---------eeecCCCCch----heeecccC-----cceeeeehhhhcCCCCcceecc----cccceeeeeEEcCCCCc
Confidence                     9999999854    99999999     9999999987544433 22222    48889999999999985

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.85  E-value=2.8e-20  Score=149.72  Aligned_cols=183  Identities=15%  Similarity=0.230  Sum_probs=142.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC-CCCCEEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP-EFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ..+++++.+|+|++||+|..-|+++||++.     ..+....+..|+.+|.++.|+.+ ...++|++++.|..|++||+.
T Consensus       460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq-----~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQ-----ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             cceEEEEECCCcceecccCccCceEEEEeh-----hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            379999999999999999999999999998     66777888999999999999855 224689999999999999975


Q ss_pred             eccCCCcccEEEEEeeecccc-------------------------------------------------EEeEEEeecC
Q 026295           89 VEDAQPLQWKLCKSFESTSTQ-------------------------------------------------VLDVQFGVSS  119 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------v~~~~~~~~~  119 (240)
                      ..      +.+++++.+|...                                                 +..++..|  
T Consensus       535 rn------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp--  606 (1080)
T KOG1408|consen  535 RN------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP--  606 (1080)
T ss_pred             cc------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC--
Confidence            32      2333333333333                                                 44555555  


Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc---cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCC
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA---IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP  196 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~  196 (240)
                      +..++++++.|..|+||++..      ++....|++.   .+..-          .|..+|.+.     |||+..+|   
T Consensus       607 ~~k~v~t~cQDrnirif~i~s------gKq~k~FKgs~~~eG~lI----------Kv~lDPSgi-----Y~atScsd---  662 (1080)
T KOG1408|consen  607 TSKLVVTVCQDRNIRIFDIES------GKQVKSFKGSRDHEGDLI----------KVILDPSGI-----YLATSCSD---  662 (1080)
T ss_pred             CcceEEEEecccceEEEeccc------cceeeeecccccCCCceE----------EEEECCCcc-----EEEEeecC---
Confidence            567788888899999999887      5555555532   22222          577899987     99999999   


Q ss_pred             CCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          197 QLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       197 ~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                        .++.+||+.++++..+.       .||+..|+.+.|.||+
T Consensus       663 --ktl~~~Df~sgEcvA~m-------~GHsE~VTG~kF~nDC  695 (1080)
T KOG1408|consen  663 --KTLCFVDFVSGECVAQM-------TGHSEAVTGVKFLNDC  695 (1080)
T ss_pred             --CceEEEEeccchhhhhh-------cCcchheeeeeecccc
Confidence              99999999998766433       2799999999999996

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=3e-20  Score=145.45  Aligned_cols=214  Identities=17%  Similarity=0.177  Sum_probs=155.3

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCC---CCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSP---DPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +..|.+.|+.++|.+....|++|+.||++++|++.   +......+++.+|++|.++|.++++.+.  ++.+++|+.||+
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n--~~~~ysgg~Dg~  367 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN--GEHCYSGGIDGT  367 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC--ceEEEeeccCce
Confidence            56788899999999999999999999999999993   3333367889999999999999999888  999999999999


Q ss_pred             EEEEEeeeccCCCccc---EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc--cc-----ceeEEe
Q 026295           82 LLLWEEIVEDAQPLQW---KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI--LK-----NWQLQA  151 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~--~~-----~~~~~~  151 (240)
                      |++|++..........   .....+.+|...|+.+++++  ....|++++.||+|+.|+......  ..     ...+..
T Consensus       368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS--TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV  445 (577)
T ss_pred             eeeeccCCCCCcccccCcchhccceeccccceeeeeecc--cccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence            9999765221111111   33456778999999999998  777799999999999999864322  00     000000


Q ss_pred             eee----------------------------cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295          152 EFQ----------------------------NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       152 ~~~----------------------------~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                      .+.                            .......+.....+.++-+.++|...     +..++..|     +.|++
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-----~~~~~hed-----~~Ir~  515 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-----ITFTAHED-----RSIRF  515 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-----eeEecccC-----Cceec
Confidence            000                            00000001111223556788888887     78888888     99999


Q ss_pred             EEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          204 WEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       204 w~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +|..++........       |-..|+++++.|+++
T Consensus       516 ~dn~~~~~l~s~~a-------~~~svtslai~~ng~  544 (577)
T KOG0642|consen  516 FDNKTGKILHSMVA-------HKDSVTSLAIDPNGP  544 (577)
T ss_pred             ccccccccchheee-------ccceecceeecCCCc
Confidence            99988765543332       555899999999985

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=9.8e-22  Score=157.71  Aligned_cols=185  Identities=12%  Similarity=0.236  Sum_probs=158.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ++-.|...|.++..-..++.+++|+.|-.+-+|.+.++     ..+..+.+|+.+|-+|.|++.  ..+|+.|..+|+|+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp-----~~i~S~~~hespIeSl~f~~~--E~LlaagsasgtiK   95 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP-----NAITSLTGHESPIESLTFDTS--ERLLAAGSASGTIK   95 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCC-----chhheeeccCCcceeeecCcc--hhhhcccccCCcee
Confidence            34567888888888778899999999999999999854     456678999999999999998  88899999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||+...       +.++++.+|...+.++.|+|  -+.|++.++.|+.+++||.+.      ..+...+..|...+.  
T Consensus        96 ~wDleeA-------k~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk------~Gc~~~~~s~~~vv~--  158 (825)
T KOG0267|consen   96 VWDLEEA-------KIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRK------KGCSHTYKSHTRVVD--  158 (825)
T ss_pred             eeehhhh-------hhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhc------cCceeeecCCcceeE--
Confidence            9999876       88889999999999999999  999999999999999999996      567777777766666  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                              .+.|+|++.     +++.|+.|     ..++|||+..++    +..++   ..|++.|..+.|+|.
T Consensus       159 --------~l~lsP~Gr-----~v~~g~ed-----~tvki~d~~agk----~~~ef---~~~e~~v~sle~hp~  207 (825)
T KOG0267|consen  159 --------VLRLSPDGR-----WVASGGED-----NTVKIWDLTAGK----LSKEF---KSHEGKVQSLEFHPL  207 (825)
T ss_pred             --------EEeecCCCc-----eeeccCCc-----ceeeeecccccc----ccccc---ccccccccccccCch
Confidence                    899999998     89999998     999999997765    22233   357779999999884

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.85  E-value=7.6e-20  Score=146.33  Aligned_cols=176  Identities=21%  Similarity=0.285  Sum_probs=145.5

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .|.+|+..|.|++...++. +++||.|.+++||...       ++...+++|+..|+++..-|.  . .+++|+.|.+|+
T Consensus        96 ~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-------~l~~~l~gH~asVWAv~~l~e--~-~~vTgsaDKtIk  164 (745)
T KOG0301|consen   96 TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-------ELVYSLQGHTASVWAVASLPE--N-TYVTGSADKTIK  164 (745)
T ss_pred             hhhccccceeeeecCCcCc-eEecccccceEEecch-------hhhcccCCcchheeeeeecCC--C-cEEeccCcceee
Confidence            4789999999999888887 9999999999999876       566678999999999999887  5 788999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +|.-  +       +.+++|.+|...|+.+++-|  ++. |++++.||.|++|++.       ++++.++.+|...+.  
T Consensus       165 lWk~--~-------~~l~tf~gHtD~VRgL~vl~--~~~-flScsNDg~Ir~w~~~-------ge~l~~~~ghtn~vY--  223 (745)
T KOG0301|consen  165 LWKG--G-------TLLKTFSGHTDCVRGLAVLD--DSH-FLSCSNDGSIRLWDLD-------GEVLLEMHGHTNFVY--  223 (745)
T ss_pred             eccC--C-------chhhhhccchhheeeeEEec--CCC-eEeecCCceEEEEecc-------CceeeeeeccceEEE--
Confidence            9986  3       78999999999999999987  655 8999999999999995       588888888887776  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                              +++..++..     .+++++.|     ++++||+...      ....+..+.-   .|+++.+-+++
T Consensus       224 --------sis~~~~~~-----~Ivs~gED-----rtlriW~~~e------~~q~I~lPtt---siWsa~~L~Ng  271 (745)
T KOG0301|consen  224 --------SISMALSDG-----LIVSTGED-----RTLRIWKKDE------CVQVITLPTT---SIWSAKVLLNG  271 (745)
T ss_pred             --------EEEecCCCC-----eEEEecCC-----ceEEEeecCc------eEEEEecCcc---ceEEEEEeeCC
Confidence                    788555544     79999999     9999999762      2333332222   67888877665

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=6.1e-20  Score=135.12  Aligned_cols=189  Identities=16%  Similarity=0.218  Sum_probs=150.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .|.+|.+.|.+..|-..|+.+++++.|.+..+||++     +++++..+.+|....+..+-.|.  ..++++++.|.+++
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-----tge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFR  339 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-----TGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFR  339 (481)
T ss_pred             eeeccccceEehhhhcCcceeeeeeccccceeeeec-----cCceeccccCcchhccccccCCc--ceEEEEeccCceeE
Confidence            367788999999999999999999999999999999     77899999999999998888888  78899999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||++..      ...+..|++|...|+++.|..  +.+ +++++.|.+|++||++..     ..++.++...       
T Consensus       340 LWDFRea------I~sV~VFQGHtdtVTS~vF~~--dd~-vVSgSDDrTvKvWdLrNM-----RsplATIRtd-------  398 (481)
T KOG0300|consen  340 LWDFREA------IQSVAVFQGHTDTVTSVVFNT--DDR-VVSGSDDRTVKVWDLRNM-----RSPLATIRTD-------  398 (481)
T ss_pred             eccchhh------cceeeeecccccceeEEEEec--CCc-eeecCCCceEEEeeeccc-----cCcceeeecC-------
Confidence            9999742      267888999999999999976  544 999999999999999863     3334444322       


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                          ..+|.++.+....     ++|.-...     +.|++||+........+.   ....+|.-.|.|++|..+
T Consensus       399 ----S~~NRvavs~g~~-----iIAiPhDN-----RqvRlfDlnG~RlaRlPr---tsRqgHrRMV~c~AW~ee  455 (481)
T KOG0300|consen  399 ----SPANRVAVSKGHP-----IIAIPHDN-----RQVRLFDLNGNRLARLPR---TSRQGHRRMVTCCAWLEE  455 (481)
T ss_pred             ----CccceeEeecCCc-----eEEeccCC-----ceEEEEecCCCccccCCc---ccccccceeeeeeecccc
Confidence                1223677776665     77777776     999999997643222111   134468889999999764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=2.3e-19  Score=135.49  Aligned_cols=130  Identities=18%  Similarity=0.273  Sum_probs=109.0

Q ss_pred             ccc-cceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCC----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            7 TLD-KGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSS----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         7 ~h~-~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      -|. ..|..+.|.++.. +||||+.|..|+||.+.....    ...+.+..+..|...|+.+.|+|+  |+++++|+.+|
T Consensus        10 wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~--gelLASg~D~g   87 (434)
T KOG1009|consen   10 WHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPD--GELLASGGDGG   87 (434)
T ss_pred             ecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCC--cCeeeecCCCc
Confidence            354 4799999999765 999999999999999864321    144566777889999999999999  99999999999


Q ss_pred             eEEEEEeeec------c---CCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           81 SLLLWEEIVE------D---AQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        81 ~v~iwd~~~~------~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      .|.+|-...-      .   .....|.......+|...|..++|+|  +++++++++.|+.+++||+..
T Consensus        88 ~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~--d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   88 EVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP--DSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             eEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC--CCceeeeeeccceEEEEEecc
Confidence            9999987611      0   01356888888899999999999999  999999999999999999976

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.84  E-value=9.6e-20  Score=145.74  Aligned_cols=155  Identities=14%  Similarity=0.141  Sum_probs=133.7

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ..+++|+..|.++++-|++ .++||+.|.+|++|.-.       +++.+|.+|+..|..+++-++   ..|++++.||.|
T Consensus       134 ~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-------~~l~tf~gHtD~VRgL~vl~~---~~flScsNDg~I  202 (745)
T KOG0301|consen  134 YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-------TLLKTFSGHTDCVRGLAVLDD---SHFLSCSNDGSI  202 (745)
T ss_pred             cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------chhhhhccchhheeeeEEecC---CCeEeecCCceE
Confidence            3478999999999999988 88899999999999865       678899999999999999775   458899999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++|++..        .++..+.+|+.-|.+++..+  ++..+++++.|++++||+-.        ++.+.+.-+...+. 
T Consensus       203 r~w~~~g--------e~l~~~~ghtn~vYsis~~~--~~~~Ivs~gEDrtlriW~~~--------e~~q~I~lPttsiW-  263 (745)
T KOG0301|consen  203 RLWDLDG--------EVLLEMHGHTNFVYSISMAL--SDGLIVSTGEDRTLRIWKKD--------ECVQVITLPTTSIW-  263 (745)
T ss_pred             EEEeccC--------ceeeeeeccceEEEEEEecC--CCCeEEEecCCceEEEeecC--------ceEEEEecCccceE-
Confidence            9999954        78999999999999999766  77889999999999999864        56666665554555 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                               +++.-+++.      +++|++|     |.||||..+
T Consensus       264 ---------sa~~L~NgD------Ivvg~SD-----G~VrVfT~~  288 (745)
T KOG0301|consen  264 ---------SAKVLLNGD------IVVGGSD-----GRVRVFTVD  288 (745)
T ss_pred             ---------EEEEeeCCC------EEEeccC-----ceEEEEEec
Confidence                     777777885      9999999     999999876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.5e-19  Score=147.38  Aligned_cols=200  Identities=17%  Similarity=0.200  Sum_probs=147.4

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-CCC-----cEEEE---------------------eE-------
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-SSS-----SFTCN---------------------LK-------   51 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~~~-----~~~~~---------------------~~-------   51 (240)
                      ..|....+.++|.|+|.+|.+|+.||.|++|+.... ..+     .+..+                     .+       
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            568899999999999999999999999999987533 100     00001                     00       


Q ss_pred             --eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295           52 --TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        52 --~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                        +..-+-++.+++|+.+  |.+++.|+.|-.|++-+....       .....+++|..+|.++.|+|  ++.+||+.+-
T Consensus        90 ~iL~Rftlp~r~~~v~g~--g~~iaagsdD~~vK~~~~~D~-------s~~~~lrgh~apVl~l~~~p--~~~fLAvss~  158 (933)
T KOG1274|consen   90 TILARFTLPIRDLAVSGS--GKMIAAGSDDTAVKLLNLDDS-------SQEKVLRGHDAPVLQLSYDP--KGNFLAVSSC  158 (933)
T ss_pred             ceeeeeeccceEEEEecC--CcEEEeecCceeEEEEecccc-------chheeecccCCceeeeeEcC--CCCEEEEEec
Confidence              0111346789999998  999999999999999998766       67788899999999999999  9999999999


Q ss_pred             CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      ||+|++||+.+      +.+...+..-...........|  ..++|+|++.     .|++...|     +.|.+|+..+.
T Consensus       159 dG~v~iw~~~~------~~~~~tl~~v~k~n~~~~s~i~--~~~aW~Pk~g-----~la~~~~d-----~~Vkvy~r~~w  220 (933)
T KOG1274|consen  159 DGKVQIWDLQD------GILSKTLTGVDKDNEFILSRIC--TRLAWHPKGG-----TLAVPPVD-----NTVKVYSRKGW  220 (933)
T ss_pred             CceEEEEEccc------chhhhhcccCCcccccccccee--eeeeecCCCC-----eEEeeccC-----CeEEEEccCCc
Confidence            99999999987      4444443322111110102233  3789999987     68888888     99999998875


Q ss_pred             CCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          210 HNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ...+.+    ... .|+..+.+++|+|+|.
T Consensus       221 e~~f~L----r~~-~~ss~~~~~~wsPnG~  245 (933)
T KOG1274|consen  221 ELQFKL----RDK-LSSSKFSDLQWSPNGK  245 (933)
T ss_pred             eeheee----ccc-ccccceEEEEEcCCCc
Confidence            444333    222 2445599999999974

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.84  E-value=2.1e-19  Score=130.52  Aligned_cols=196  Identities=19%  Similarity=0.283  Sum_probs=144.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      +-+.|.|+.|.|++..+++-. |..|.+|++.....-....... -..+....++-+|+|...++.+++. .|++++.||
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D  199 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD  199 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence            345899999999999988876 6899999998543100011111 1135666788899997668888775 489999999


Q ss_pred             eeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      +++.       ++...+. .|...|..+.|+|+ ...+|++|+.||.|+|||++..     ..+++++..|..++.    
T Consensus       200 ~RT~-------~~~~sI~dAHgq~vrdlDfNpn-kq~~lvt~gDdgyvriWD~R~t-----k~pv~el~~HsHWvW----  262 (370)
T KOG1007|consen  200 LRTM-------KKNNSIEDAHGQRVRDLDFNPN-KQHILVTCGDDGYVRIWDTRKT-----KFPVQELPGHSHWVW----  262 (370)
T ss_pred             ccch-------hhhcchhhhhcceeeeccCCCC-ceEEEEEcCCCccEEEEeccCC-----CccccccCCCceEEE----
Confidence            9875       4444444 57788999999993 2346899999999999999974     567788889999988    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc----------------------ceeEeeecCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW----------------------LPVAELALPE  223 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~----------------------~~~~~~~~~~  223 (240)
                            +|.|+|....    ++++|++|     ..|.+|....-..+.                      .+-..++...
T Consensus       263 ------~VRfn~~hdq----LiLs~~SD-----s~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd  327 (370)
T KOG1007|consen  263 ------AVRFNPEHDQ----LILSGGSD-----SAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD  327 (370)
T ss_pred             ------EEEecCccce----EEEecCCC-----ceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc
Confidence                  9999998853    99999999     999999764322110                      1112233455


Q ss_pred             CCCCceEEEEEecC
Q 026295          224 DRSDEVYAVAWALN  237 (240)
Q Consensus       224 ~h~~~v~~v~~sp~  237 (240)
                      .|.+.|++++||.-
T Consensus       328 ehEDSVY~~aWSsa  341 (370)
T KOG1007|consen  328 EHEDSVYALAWSSA  341 (370)
T ss_pred             ccccceEEEeeccC
Confidence            69999999999863

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=2.6e-20  Score=144.37  Aligned_cols=181  Identities=19%  Similarity=0.278  Sum_probs=143.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      +..|+++...|||+.|++|++-.++.|||+..+   +......+....-..+.++.+|+  .++.++++.||.|.|||+.
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAap---TprikaeltssapaCyALa~spD--akvcFsccsdGnI~vwDLh  539 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP---TPRIKAELTSSAPACYALAISPD--AKVCFSCCSDGNIAVWDLH  539 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCC---CcchhhhcCCcchhhhhhhcCCc--cceeeeeccCCcEEEEEcc
Confidence            457899999999999999999999999999865   33444444433345778999999  9999999999999999999


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      +.       ..++.|++|...+.+|.+++  +|..|-+|+.|++|+.||+++...+.+.    .|.             .
T Consensus       540 nq-------~~VrqfqGhtDGascIdis~--dGtklWTGGlDntvRcWDlregrqlqqh----dF~-------------S  593 (705)
T KOG0639|consen  540 NQ-------TLVRQFQGHTDGASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQH----DFS-------------S  593 (705)
T ss_pred             cc-------eeeecccCCCCCceeEEecC--CCceeecCCCccceeehhhhhhhhhhhh----hhh-------------h
Confidence            87       89999999999999999998  9999999999999999999985332211    111             1


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .++++.++|++.     .|++|...     +.+.|-.....+ ++.+    .   -|.+-|.+|.|++.|
T Consensus       594 QIfSLg~cP~~d-----WlavGMen-----s~vevlh~skp~-kyql----h---lheScVLSlKFa~cG  645 (705)
T KOG0639|consen  594 QIFSLGYCPTGD-----WLAVGMEN-----SNVEVLHTSKPE-KYQL----H---LHESCVLSLKFAYCG  645 (705)
T ss_pred             hheecccCCCcc-----ceeeeccc-----CcEEEEecCCcc-ceee----c---ccccEEEEEEecccC
Confidence            233788999988     89999988     777776654322 2222    1   277799999999987

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.4e-19  Score=130.89  Aligned_cols=161  Identities=17%  Similarity=0.318  Sum_probs=122.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED   91 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   91 (240)
                      ..|+.|++.|.+||+|..||.|.|||+.     +......+.+|..+|.+++||++  |+.|++++.|..|.+||+..++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-----T~~iar~lsaH~~pi~sl~WS~d--gr~LltsS~D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFD-----TFRIARMLSAHVRPITSLCWSRD--GRKLLTSSRDWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEcc-----ccchhhhhhccccceeEEEecCC--CCEeeeecCCceeEEEeccCCC
Confidence            6799999999999999999999999999     77788888999999999999999  9999999999999999998763


Q ss_pred             CC------CcccEE----------EEE----------eeecc-------------ccEEeEEEeecCCCcEEEEEeCCCc
Q 026295           92 AQ------PLQWKL----------CKS----------FESTS-------------TQVLDVQFGVSSTSLKLVAAYSDGH  132 (240)
Q Consensus        92 ~~------~~~~~~----------~~~----------~~~~~-------------~~v~~~~~~~~~~~~~l~~~~~dg~  132 (240)
                      .-      .+-|..          +..          +....             ....+..|.+  .|+++.+|+..|.
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr--~g~yIitGtsKGk  176 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR--RGKYIITGTSKGK  176 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC--CCCEEEEecCcce
Confidence            20      000000          000          00000             0011123544  7889999999999


Q ss_pred             EEEEEecCcccccceeEEeeeeccc-ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          133 VKVYELLDPLILKNWQLQAEFQNAI-DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       133 v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      +.+++..+      .+++..++... ..|.          .+.++-.+.     .|++-.+|     +.||.|+.+
T Consensus       177 llv~~a~t------~e~vas~rits~~~IK----------~I~~s~~g~-----~liiNtsD-----RvIR~ye~~  226 (405)
T KOG1273|consen  177 LLVYDAET------LECVASFRITSVQAIK----------QIIVSRKGR-----FLIINTSD-----RVIRTYEIS  226 (405)
T ss_pred             EEEEecch------heeeeeeeechheeee----------EEEEeccCc-----EEEEecCC-----ceEEEEehh
Confidence            99999987      57776665443 3444          777888776     89999999     999999986

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.1e-19  Score=138.68  Aligned_cols=174  Identities=19%  Similarity=0.373  Sum_probs=132.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe------------------EeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNL------------------KTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .|+++|.|..|..|.|||+.-..  ...+..                  ...+|+..|.+|.|+.. ..+.|+||+.|.+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d--~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~-~~nVLaSgsaD~T  267 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVD--AVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN-FRNVLASGSADKT  267 (463)
T ss_pred             CcceEEEeccCceeEEecccccc--ccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc-cceeEEecCCCce
Confidence            36799999999999999986332  111111                  12368889999999776 4789999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc-ceeEEeeeeccccee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK-NWQLQAEFQNAIDSV  160 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~-~~~~~~~~~~~~~~v  160 (240)
                      |++||+..+       ++...+..|...|.+++|+|. ...+|++|+.|++|++.|+|.+.... .|+.    .+   .+
T Consensus       268 V~lWD~~~g-------~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~----~g---~V  332 (463)
T KOG0270|consen  268 VKLWDVDTG-------KPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKF----DG---EV  332 (463)
T ss_pred             EEEEEcCCC-------CcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEe----cc---ce
Confidence            999999888       889999999999999999985 56789999999999999999643221 2221    11   12


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-CCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-HNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      .          .+.|+|....    .+.++..|     |+|+-+|.+.. +..|..    .   .|.++|.+|++++.
T Consensus       333 E----------kv~w~~~se~----~f~~~tdd-----G~v~~~D~R~~~~~vwt~----~---AHd~~ISgl~~n~~  384 (463)
T KOG0270|consen  333 E----------KVAWDPHSEN----SFFVSTDD-----GTVYYFDIRNPGKPVWTL----K---AHDDEISGLSVNIQ  384 (463)
T ss_pred             E----------EEEecCCCce----eEEEecCC-----ceEEeeecCCCCCceeEE----E---eccCCcceEEecCC
Confidence            2          7899998863    56666665     99999999886 434443    3   37779999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=5.8e-20  Score=142.47  Aligned_cols=187  Identities=14%  Similarity=0.251  Sum_probs=148.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ..|.+-|.++.+|...+++.||+. |.|+|||+...+  ...++..+.  .....|.+....|+  |+.|++|+...++.
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLdcl~rdnyiRSckL~pd--grtLivGGeastls  490 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLDCLNRDNYIRSCKLLPD--GRTLIVGGEASTLS  490 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCccccccccCcccceeeeEecCC--CceEEeccccceee
Confidence            358888888999999999999987 899999998654  223333333  23567889999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      |||+.....     ..-..+......+..++.+|  +.+..++++.||.|.|||+..      ..++..|++|...+.  
T Consensus       491 iWDLAapTp-----rikaeltssapaCyALa~sp--DakvcFsccsdGnI~vwDLhn------q~~VrqfqGhtDGas--  555 (705)
T KOG0639|consen  491 IWDLAAPTP-----RIKAELTSSAPACYALAISP--DAKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGAS--  555 (705)
T ss_pred             eeeccCCCc-----chhhhcCCcchhhhhhhcCC--ccceeeeeccCCcEEEEEccc------ceeeecccCCCCCce--
Confidence            999976532     33333333345678899999  999999999999999999997      688889999988877  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                              |+..++++.     .|-+|+-|     ++||.||++++.+..+.        ..++.|.++..+|++
T Consensus       556 --------cIdis~dGt-----klWTGGlD-----ntvRcWDlregrqlqqh--------dF~SQIfSLg~cP~~  604 (705)
T KOG0639|consen  556 --------CIDISKDGT-----KLWTGGLD-----NTVRCWDLREGRQLQQH--------DFSSQIFSLGYCPTG  604 (705)
T ss_pred             --------eEEecCCCc-----eeecCCCc-----cceeehhhhhhhhhhhh--------hhhhhheecccCCCc
Confidence                    999999998     79999999     99999999986543221        245577888777765

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=3.6e-19  Score=141.65  Aligned_cols=170  Identities=13%  Similarity=0.141  Sum_probs=143.5

Q ss_pred             chhcccccceEEEEE-CCCCCEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEee-ecCccEEEEEEcCCCCCCEEEE
Q 026295            3 KAVATLDKGTTSSSW-NYCGQRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTK-VHAGAILKVVWVPPEFGDAVAC   75 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~-s~~~~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s   75 (240)
                      ..+..|.+-|.|+++ .++..++|+|+-|+.|.|||+.....     ........+. ++...|++++-++.  |..+++
T Consensus       111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t--~t~ivs  188 (735)
T KOG0308|consen  111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT--GTIIVS  188 (735)
T ss_pred             hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc--ceEEEe
Confidence            357889999999999 77888999999999999999983311     0111122233 78889999999998  999999


Q ss_pred             EecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           76 ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        76 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      |+..+-+++||.+..       +.+..+++|+..|..+-.++  +|..++++++||+|++||+..      ..++.++..
T Consensus       189 Ggtek~lr~wDprt~-------~kimkLrGHTdNVr~ll~~d--DGt~~ls~sSDgtIrlWdLgq------QrCl~T~~v  253 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTC-------KKIMKLRGHTDNVRVLLVND--DGTRLLSASSDGTIRLWDLGQ------QRCLATYIV  253 (735)
T ss_pred             cCcccceEEeccccc-------cceeeeeccccceEEEEEcC--CCCeEeecCCCceEEeeeccc------cceeeeEEe
Confidence            999999999999887       78888899999999999988  999999999999999999987      678888888


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      |...+.          ++.-+|+-.     .+.+|+.|     +.|..=|+++.
T Consensus       254 H~e~VW----------aL~~~~sf~-----~vYsG~rd-----~~i~~Tdl~n~  287 (735)
T KOG0308|consen  254 HKEGVW----------ALQSSPSFT-----HVYSGGRD-----GNIYRTDLRNP  287 (735)
T ss_pred             ccCceE----------EEeeCCCcc-----eEEecCCC-----CcEEecccCCc
Confidence            877666          666677665     89999999     99999998874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.83  E-value=5.2e-19  Score=133.35  Aligned_cols=127  Identities=16%  Similarity=0.212  Sum_probs=109.2

Q ss_pred             hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+.+|.+.|..++|+| +...||+||+|.+|.||.+..+.-  .-.+++..+.+|...|..++|.|. ..+.|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPt-A~NVLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPT-APNVLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeeccc-chhhHhhccCCc
Confidence            3668999999999999 557999999999999999975421  122567788999999999999887 467889999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      +|.+|++.++       ..+-++. |..-|.++.|+.  +|.+|++.+.|..|+|||.++.
T Consensus       155 ~v~iWnv~tg-------eali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~  205 (472)
T KOG0303|consen  155 TVSIWNVGTG-------EALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRG  205 (472)
T ss_pred             eEEEEeccCC-------ceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCC
Confidence            9999999877       5566666 899999999987  9999999999999999999984

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.82  E-value=8.6e-19  Score=127.80  Aligned_cols=175  Identities=14%  Similarity=0.196  Sum_probs=138.1

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC-CCEEEEEecCCeEEE
Q 026295            7 TLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF-GDAVACICSDGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~d~~v~i   84 (240)
                      .|.-+|.++.|=| |...+.+++-|.+++|||..     +.+....|+ .++.|++-+|+|-.. ..++++|..|-.|++
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtn-----TlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrL  172 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTN-----TLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRL  172 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecc-----cceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEE
Confidence            4666899999988 55689999999999999998     777777776 478899999998733 246778888889999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec-
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM-  162 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~-  162 (240)
                      .|+..+       .....+.+|+..|.++.|+|  ... .|++|+.||.|++||++..     -.+...+..|...-.+ 
T Consensus       173 CDi~SG-------s~sH~LsGHr~~vlaV~Wsp--~~e~vLatgsaDg~irlWDiRra-----sgcf~~lD~hn~k~~p~  238 (397)
T KOG4283|consen  173 CDIASG-------SFSHTLSGHRDGVLAVEWSP--SSEWVLATGSADGAIRLWDIRRA-----SGCFRVLDQHNTKRPPI  238 (397)
T ss_pred             EeccCC-------cceeeeccccCceEEEEecc--CceeEEEecCCCceEEEEEeecc-----cceeEEeecccCccCcc
Confidence            999888       88999999999999999999  555 4789999999999999863     1333334333321111 


Q ss_pred             ---cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          163 ---FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       163 ---~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                         ...+...++.++|..++.     ++++.+.|     ..+++|+...+..
T Consensus       239 ~~~n~ah~gkvngla~tSd~~-----~l~~~gtd-----~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  239 LKTNTAHYGKVNGLAWTSDAR-----YLASCGTD-----DRIRVWNMESGRN  280 (397)
T ss_pred             ccccccccceeeeeeecccch-----hhhhccCc-----cceEEeecccCcc
Confidence               223445778999999988     89999999     8999999977643

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.81  E-value=1.4e-18  Score=126.30  Aligned_cols=198  Identities=19%  Similarity=0.248  Sum_probs=144.7

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            7 TLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         7 ~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      .+..++++..|+. +-+++.+.+-|.+..|||+....  .+.....+-.|..+|++++|... .-+.|++.+.||+||+|
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~--~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmF  224 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV--SGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMF  224 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeecc--ccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEE
Confidence            4556889999987 66899999999999999998432  22334556689999999999875 24689999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-CcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      |++..+..    ..+.+-.....+...++|++. +.+++|+-..| ..|.|.|++.+     ...+.++..|...|.   
T Consensus       225 DLR~leHS----TIIYE~p~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P-----~tpva~L~~H~a~VN---  291 (364)
T KOG0290|consen  225 DLRSLEHS----TIIYEDPSPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVP-----CTPVARLRNHQASVN---  291 (364)
T ss_pred             Eecccccc----eEEecCCCCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCC-----CcceehhhcCccccc---
Confidence            99876321    223333333567788999864 55667765544 57999999987     677788888877665   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                             .++|.|....    .|++++.|     ..+.|||+......-.....+ .. .-++.|+.++|+|.-
T Consensus       292 -------gIaWaPhS~~----hictaGDD-----~qaliWDl~q~~~~~~~dPil-ay-~a~~EVNqi~Ws~~~  347 (364)
T KOG0290|consen  292 -------GIAWAPHSSS----HICTAGDD-----CQALIWDLQQMPRENGEDPIL-AY-TAGGEVNQIQWSSSQ  347 (364)
T ss_pred             -------ceEecCCCCc----eeeecCCc-----ceEEEEecccccccCCCCchh-hh-hccceeeeeeecccC
Confidence                   9999998854    89999998     999999998654321111111 11 133489999999753

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.8e-18  Score=124.04  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=125.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      -.+.-++|+-++.+++.....|+|.|....     ..+++.+++.|.....+|.|+|+  |++||+|+.|..+.+||+..
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp-----sLkpv~si~AH~snCicI~f~p~--GryfA~GsADAlvSLWD~~E  220 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYP-----SLKPVQSIKAHPSNCICIEFDPD--GRYFATGSADALVSLWDVDE  220 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEecc-----ccccccccccCCcceEEEEECCC--CceEeeccccceeeccChhH
Confidence            467788999888888888888999999887     77899999999999999999999  99999999999999999977


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      .       -+++.+..+.-+|+.+.|+.  +|++||+++.|..|-|=+.++      +..+.+++... +.         
T Consensus       221 L-------iC~R~isRldwpVRTlSFS~--dg~~lASaSEDh~IDIA~vet------Gd~~~eI~~~~-~t---------  275 (313)
T KOG1407|consen  221 L-------ICERCISRLDWPVRTLSFSH--DGRMLASASEDHFIDIAEVET------GDRVWEIPCEG-PT---------  275 (313)
T ss_pred             h-------hhheeeccccCceEEEEecc--CcceeeccCccceEEeEeccc------CCeEEEeeccC-Cc---------
Confidence            6       88999999999999999999  999999999999999988887      45455543322 12         


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                       +.|+|+|...     +||-+.+|
T Consensus       276 -~tVAWHPk~~-----LLAyA~dd  293 (313)
T KOG1407|consen  276 -FTVAWHPKRP-----LLAYACDD  293 (313)
T ss_pred             -eeEEecCCCc-----eeeEEecC
Confidence             3899999987     78887765

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.81  E-value=1.3e-18  Score=138.25  Aligned_cols=132  Identities=19%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE--eeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK--TKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ....|.++|..+.|.|-..+|++++.|.++++||+...     +++..  +.+|.+.|.+++|.|. ....|++|+.||.
T Consensus        95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s-----~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~  168 (720)
T KOG0321|consen   95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS-----RLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGE  168 (720)
T ss_pred             ccccccceeEeeccCCCceeEEEccCCceeeeeeeccc-----eeecceeecccccccchhhhccC-CCcceeeccCCCc
Confidence            34579999999999996679999999999999999843     44444  7899999999999987 3578999999999


Q ss_pred             EEEEEeeeccCC--------------C------cccEEEEEeeeccc----cEEeEEEeecCCCcEEEEEeC-CCcEEEE
Q 026295           82 LLLWEEIVEDAQ--------------P------LQWKLCKSFESTST----QVLDVQFGVSSTSLKLVAAYS-DGHVKVY  136 (240)
Q Consensus        82 v~iwd~~~~~~~--------------~------~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~l~~~~~-dg~v~iw  136 (240)
                      |.|||++.....              +      +.-+.+.....+..    .|+.+.| -  |...|++++. |+.|+||
T Consensus       169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVW  245 (720)
T KOG0321|consen  169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVW  245 (720)
T ss_pred             EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEE
Confidence            999998754210              0      00000111112222    3444554 3  6667888887 9999999


Q ss_pred             EecCcccc
Q 026295          137 ELLDPLIL  144 (240)
Q Consensus       137 ~~~~~~~~  144 (240)
                      |++...-.
T Consensus       246 DLRk~~~~  253 (720)
T KOG0321|consen  246 DLRKNYTA  253 (720)
T ss_pred             eecccccc
Confidence            99976433

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.81  E-value=1.1e-18  Score=128.79  Aligned_cols=120  Identities=23%  Similarity=0.361  Sum_probs=106.0

Q ss_pred             ccccceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            7 TLDKGTTSSSWNYC----GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         7 ~h~~~v~~~~~s~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .|++....++|+.+    ..+||.|+.-|.|+|.|+.     ..++...+.+|...|+.+++.|. ..+++++++.|.+|
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~-----~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~sv  160 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV-----SGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSV  160 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-----hhhhccceeccCccchhhhcCCC-CCcEEEEecCCceE
Confidence            36777888899874    3589999999999999998     66888899999999999999987 36799999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      ++|++++.       .++..|-   +|...|.++.|++  +|.++++++.|.++++|++..+
T Consensus       161 RlwnI~~~-------~Cv~VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  161 RLWNIQTD-------VCVAVFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             EEEeccCC-------eEEEEecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChh
Confidence            99999887       7777764   6999999999999  9999999999999999999843

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.9e-17  Score=132.41  Aligned_cols=190  Identities=15%  Similarity=0.251  Sum_probs=141.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ..+|+++||+.+.+.||.+-.||.|.||++..    .+-+...+.+++ ..|-+++|++   +..|.+.+.+|.|.-||+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~----~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN----NWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCC----CceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEec
Confidence            35899999999999999999999999999985    466666666554 5699999985   566778889999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      .+.       ++...+......|++++.+|  .+..++.|+.||.+..++....    ..+....+......+-      
T Consensus        98 ~~l-------k~~~~~d~~gg~IWsiai~p--~~~~l~IgcddGvl~~~s~~p~----~I~~~r~l~rq~sRvL------  158 (691)
T KOG2048|consen   98 HTL-------KQKYNIDSNGGAIWSIAINP--ENTILAIGCDDGVLYDFSIGPD----KITYKRSLMRQKSRVL------  158 (691)
T ss_pred             ccC-------ceeEEecCCCcceeEEEeCC--ccceEEeecCCceEEEEecCCc----eEEEEeecccccceEE------
Confidence            887       88888888889999999999  8888999999996666655431    1122222323333333      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC-CCCCceEEEEEecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE-DRSDEVYAVAWALNI  238 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~  238 (240)
                          +++|+|++.     .++.|+.|     |.|++||...+.........+.... +-..-|++|.|-.|+
T Consensus       159 ----slsw~~~~~-----~i~~Gs~D-----g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~  216 (691)
T KOG2048|consen  159 ----SLSWNPTGT-----KIAGGSID-----GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS  216 (691)
T ss_pred             ----EEEecCCcc-----EEEecccC-----ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence                899999997     69999999     9999999988765442222222111 123357888776554

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.7e-18  Score=132.92  Aligned_cols=197  Identities=11%  Similarity=0.164  Sum_probs=144.2

Q ss_pred             hccccc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDK-GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~-~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +.+++. .+.....++++++|+..+..|.|.|....     +.+.+.+++- .+.|..++|+.+  +..|+.++.+|.|.
T Consensus       298 ~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-----T~eli~s~Ki-eG~v~~~~fsSd--sk~l~~~~~~GeV~  369 (514)
T KOG2055|consen  298 PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-----TKELITSFKI-EGVVSDFTFSSD--SKELLASGGTGEVY  369 (514)
T ss_pred             CCCcccchhheeEecCCCCeEEEcccCceEEeehhh-----hhhhhheeee-ccEEeeEEEecC--CcEEEEEcCCceEE
Confidence            334443 56778899999999999999999999887     7778888874 788999999988  89999989999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||++..       .++..+... +.|....+++..++.+||+|+..|.|.|||..+.......+++..+......|   
T Consensus       370 v~nl~~~-------~~~~rf~D~-G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~I---  438 (514)
T KOG2055|consen  370 VWNLRQN-------SCLHRFVDD-GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAI---  438 (514)
T ss_pred             EEecCCc-------ceEEEEeec-CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheee---
Confidence            9999876       788887753 44544444433399999999999999999987644333344444444444444   


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             +++.|+|+..     +||.++...   -..+|+-.+.+..    .+..++....--+.|+|++|||.+|
T Consensus       439 -------tsl~Fn~d~q-----iLAiaS~~~---knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~sG  495 (514)
T KOG2055|consen  439 -------TSLQFNHDAQ-----ILAIASRVK---KNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPNSG  495 (514)
T ss_pred             -------eeeeeCcchh-----hhhhhhhcc---ccceEEEecccee----eeccCCCCCCcccceEEEEecCCCc
Confidence                   4999999987     888887531   0678887775422    1222222223333799999999886

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.80  E-value=4.7e-18  Score=131.80  Aligned_cols=189  Identities=13%  Similarity=0.161  Sum_probs=146.0

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +.+..|.+.|+++.++....+||+++..|-|.|..+.     +......|..- ...|.-+.|+|. ...+|.+++.+|.
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~-----t~~~tt~f~~~sgqsvRll~ys~s-kr~lL~~asd~G~  188 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTK-----TKQKTTTFTIDSGQSVRLLRYSPS-KRFLLSIASDKGA  188 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecc-----cCccccceecCCCCeEEEeecccc-cceeeEeeccCCe
Confidence            5588999999999999999999999999999999987     44444455432 345678999987 2456778899999


Q ss_pred             EEEEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      |.+||+...       .+...+ ..|..+...|+|+|. +..+|++.+.|..|.+||.+.      ......+. ...+.
T Consensus       189 VtlwDv~g~-------sp~~~~~~~HsAP~~gicfsps-ne~l~vsVG~Dkki~~yD~~s------~~s~~~l~-y~~Pl  253 (673)
T KOG4378|consen  189 VTLWDVQGM-------SPIFHASEAHSAPCRGICFSPS-NEALLVSVGYDKKINIYDIRS------QASTDRLT-YSHPL  253 (673)
T ss_pred             EEEEeccCC-------CcccchhhhccCCcCcceecCC-ccceEEEecccceEEEeeccc------ccccceee-ecCCc
Confidence            999999876       444444 468899999999995 556789999999999999986      23333332 22233


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .          .|+|.+++.     +|+.|...     |.|..||++..+..   +..+.   .|...|++|+|-|..
T Consensus       254 s----------tvaf~~~G~-----~L~aG~s~-----G~~i~YD~R~~k~P---v~v~s---ah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  254 S----------TVAFSECGT-----YLCAGNSK-----GELIAYDMRSTKAP---VAVRS---AHDASVTRVAFQPSP  305 (673)
T ss_pred             c----------eeeecCCce-----EEEeecCC-----ceEEEEecccCCCC---ceEee---ecccceeEEEeeecc
Confidence            4          899999997     89999888     99999999975433   34344   477799999998863

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.80  E-value=9.5e-19  Score=127.16  Aligned_cols=195  Identities=19%  Similarity=0.274  Sum_probs=140.2

Q ss_pred             cchhcccccceEEEEECC-CCCEEEEEeCC-------CcEEEEeCCCCC----CCcEEEEeEee-ecCccEEEEEEcCCC
Q 026295            2 DKAVATLDKGTTSSSWNY-CGQRLATGSTD-------GTLSIFDSPDPS----SSSFTCNLKTK-VHAGAILKVVWVPPE   68 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~d-------~~i~iw~~~~~~----~~~~~~~~~~~-~h~~~v~~~~~~~~~   68 (240)
                      .+.+..|.+.|..++-+| +.+.|+|+..+       ..+.||.+.++-    ..+++++..+. .+-+.|.++.|.|+ 
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn-  134 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN-  134 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC-
Confidence            355777889999999999 45677777553       236799987542    12455666665 45678999999998 


Q ss_pred             CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc
Q 026295           69 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI  143 (240)
Q Consensus        69 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~  143 (240)
                       +..+++-. |..|.+|++.....      ....+.     +++...++-+|+|+.++..+++.+ |+++..||+++.  
T Consensus       135 -s~klasm~-dn~i~l~~l~ess~------~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~--  203 (370)
T KOG1007|consen  135 -SDKLASMD-DNNIVLWSLDESSK------IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM--  203 (370)
T ss_pred             -CCeeEEec-cCceEEEEcccCcc------hheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch--
Confidence             88888765 88999999976521      122221     245678889999988888666554 789999999973  


Q ss_pred             ccceeEEeeee-cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC
Q 026295          144 LKNWQLQAEFQ-NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP  222 (240)
Q Consensus       144 ~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~  222 (240)
                          .....+. .|...++          .+.|+|+..    .+|++|+.|     |.|+|||.+..+.   ++.+++  
T Consensus       204 ----~~~~sI~dAHgq~vr----------dlDfNpnkq----~~lvt~gDd-----gyvriWD~R~tk~---pv~el~--  255 (370)
T KOG1007|consen  204 ----KKNNSIEDAHGQRVR----------DLDFNPNKQ----HILVTCGDD-----GYVRIWDTRKTKF---PVQELP--  255 (370)
T ss_pred             ----hhhcchhhhhcceee----------eccCCCCce----EEEEEcCCC-----ccEEEEeccCCCc---cccccC--
Confidence                2222332 3444455          899999885    388888888     9999999987542   334444  


Q ss_pred             CCCCCceEEEEEecC
Q 026295          223 EDRSDEVYAVAWALN  237 (240)
Q Consensus       223 ~~h~~~v~~v~~sp~  237 (240)
                       +|+.+|++|.|+|-
T Consensus       256 -~HsHWvW~VRfn~~  269 (370)
T KOG1007|consen  256 -GHSHWVWAVRFNPE  269 (370)
T ss_pred             -CCceEEEEEEecCc
Confidence             68889999999983

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=9.7e-18  Score=128.75  Aligned_cols=194  Identities=18%  Similarity=0.195  Sum_probs=139.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~   88 (240)
                      +.|+++.|+|....|++|+.|++++||.++..   +-..++.+.--..+|.+..|.|+  |. .+++++.-..+..||+.
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk---~N~~lqS~~l~~fPi~~a~f~p~--G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGK---VNPKLQSIHLEKFPIQKAEFAPN--GHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCc---cChhheeeeeccCccceeeecCC--CceEEEecccceEEEEeecc
Confidence            58999999999999999999999999999865   23356666666789999999998  88 88888888899999986


Q ss_pred             eccCC------CcccEE--------------------------------EEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295           89 VEDAQ------PLQWKL--------------------------------CKSFESTSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        89 ~~~~~------~~~~~~--------------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      ...-.      +.+-+.                                +..++ -.+.|..++|+.  ++..|++++.+
T Consensus       289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS--dsk~l~~~~~~  365 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS--DSKELLASGGT  365 (514)
T ss_pred             ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec--CCcEEEEEcCC
Confidence            54210      000000                                01111 125678899987  89999999999


Q ss_pred             CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       131 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      |.|.+||+++      ..++..+..... +.        ..+++-++++.     +||+|+..     |.|.|||..+..
T Consensus       366 GeV~v~nl~~------~~~~~rf~D~G~-v~--------gts~~~S~ng~-----ylA~GS~~-----GiVNIYd~~s~~  420 (514)
T KOG2055|consen  366 GEVYVWNLRQ------NSCLHRFVDDGS-VH--------GTSLCISLNGS-----YLATGSDS-----GIVNIYDGNSCF  420 (514)
T ss_pred             ceEEEEecCC------cceEEEEeecCc-cc--------eeeeeecCCCc-----eEEeccCc-----ceEEEeccchhh
Confidence            9999999998      355555543211 11        12677777776     99999999     999999976532


Q ss_pred             CC--cceeEeeecCCCCCCceEEEEEecCCC
Q 026295          211 NR--WLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       211 ~~--~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ..  .++...+.   .-...|++++|+||..
T Consensus       421 ~s~~PkPik~~d---NLtt~Itsl~Fn~d~q  448 (514)
T KOG2055|consen  421 ASTNPKPIKTVD---NLTTAITSLQFNHDAQ  448 (514)
T ss_pred             ccCCCCchhhhh---hhheeeeeeeeCcchh
Confidence            22  12222222   2444899999999974

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=2.2e-19  Score=150.69  Aligned_cols=194  Identities=15%  Similarity=0.333  Sum_probs=143.5

Q ss_pred             cceEEEEECCCCCE----EEEEeCCCcEEEEeCCCC-CCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295           10 KGTTSSSWNYCGQR----LATGSTDGTLSIFDSPDP-SSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus        10 ~~v~~~~~s~~~~~----l~~~~~d~~i~iw~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .+.+.++|.+.|..    ||.|.+||.|.+||.... .......+.+...|++.|..+.|++. .++++++|+.||.|.|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~-q~nlLASGa~~geI~i  143 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPF-QGNLLASGADDGEILI  143 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeecccc-CCceeeccCCCCcEEE
Confidence            47889999997765    999999999999998752 11133556777899999999999998 3669999999999999


Q ss_pred             EEeeeccCCCcccEEEEEe--eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           85 WEEIVEDAQPLQWKLCKSF--ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ||+.+.+       .....  ......|.+++|+.. ...+|++++.+|++.|||++.      .+.+..+..+...   
T Consensus       144 WDlnn~~-------tP~~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~------~~pii~ls~~~~~---  206 (1049)
T KOG0307|consen  144 WDLNKPE-------TPFTPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRK------KKPIIKLSDTPGR---  206 (1049)
T ss_pred             eccCCcC-------CCCCCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccC------CCcccccccCCCc---
Confidence            9997642       11111  235578999999752 456799999999999999997      2334344333221   


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                           +.++.++|+|+...    .|++++.||..  -.|.+||++.....   ..+   .++|.-.|.+++|+|.+
T Consensus       207 -----~~~S~l~WhP~~aT----ql~~As~dd~~--PviqlWDlR~assP---~k~---~~~H~~GilslsWc~~D  265 (1049)
T KOG0307|consen  207 -----MHCSVLAWHPDHAT----QLLVASGDDSA--PVIQLWDLRFASSP---LKI---LEGHQRGILSLSWCPQD  265 (1049)
T ss_pred             -----cceeeeeeCCCCce----eeeeecCCCCC--ceeEeecccccCCc---hhh---hcccccceeeeccCCCC
Confidence                 22348999999863    67888877633  58999999875433   222   23688899999999976

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=9.1e-18  Score=123.32  Aligned_cols=172  Identities=16%  Similarity=0.257  Sum_probs=134.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCC-------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCc
Q 026295           23 RLATGSTDGTLSIFDSPDPS-------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPL   95 (240)
Q Consensus        23 ~l~~~~~d~~i~iw~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   95 (240)
                      .|++|++...|.=+++....       ..+..++..+..|.+.+++++.  +  +.++++|+.|-+|+|||++..     
T Consensus         3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s--~~~~aSGssDetI~IYDm~k~-----   73 (362)
T KOG0294|consen    3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--S--GPYVASGSSDETIHIYDMRKR-----   73 (362)
T ss_pred             eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--c--ceeEeccCCCCcEEEEeccch-----
Confidence            46778887777667665432       1144556777899999999998  3  789999999999999999877     


Q ss_pred             ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEE
Q 026295           96 QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISW  175 (240)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~  175 (240)
                        ..+..+-.|.+.|+++.|.+......|++|+.||.|.+|+...      |++...++.|...|.          .++.
T Consensus        74 --~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~------W~~~~slK~H~~~Vt----------~lsi  135 (362)
T KOG0294|consen   74 --KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS------WELLKSLKAHKGQVT----------DLSI  135 (362)
T ss_pred             --hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC------eEEeeeecccccccc----------eeEe
Confidence              7788888899999999999843334799999999999999987      999999999988777          9999


Q ss_pred             eCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          176 NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       176 ~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +|.+.     +-++-+.|     +.++.|++-++..-+.+  .+.    +  .-+-|.|+|.|-
T Consensus       136 HPS~K-----LALsVg~D-----~~lr~WNLV~Gr~a~v~--~L~----~--~at~v~w~~~Gd  181 (362)
T KOG0294|consen  136 HPSGK-----LALSVGGD-----QVLRTWNLVRGRVAFVL--NLK----N--KATLVSWSPQGD  181 (362)
T ss_pred             cCCCc-----eEEEEcCC-----ceeeeehhhcCccceee--ccC----C--cceeeEEcCCCC
Confidence            99997     45555566     99999999887644322  222    1  234489998774

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=2.8e-18  Score=131.50  Aligned_cols=187  Identities=18%  Similarity=0.203  Sum_probs=141.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC------------cEEEEeEe-eecCccEEEEEEcCCCCCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS------------SFTCNLKT-KVHAGAILKVVWVPPEFGD   71 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~------------~~~~~~~~-~~h~~~v~~~~~~~~~~~~   71 (240)
                      +..|.-.|.+++++|+.++.++++.+++|.=|++......            .+.+...- +.|...+.+++.+++  +.
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D--gk  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD--GK  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC--Cc
Confidence            4568889999999999999999999999999998632100            00011111 378888999999999  99


Q ss_pred             EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe
Q 026295           72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA  151 (240)
Q Consensus        72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~  151 (240)
                      +|++|+.|..|.||+.++.       +.+..+.+|...|.+++|-.  ....+.+++.|++|++|++..      ...+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~-------ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~------~s~ve  280 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTL-------EHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQ------LSYVE  280 (479)
T ss_pred             EEEecCCCceEEEecCccc-------chhhcccccccceeeeeeec--CccceeeeecCCceEEEehhH------hHHHH
Confidence            9999999999999999887       88888999999999999965  556689999999999999986      55566


Q ss_pred             eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                      ++-+|+..|.          .+.-.....     .+.+|+.|     +++++|++....+..        +.+|.+.+-|
T Consensus       281 tlyGHqd~v~----------~IdaL~reR-----~vtVGgrD-----rT~rlwKi~eesqli--------frg~~~sidc  332 (479)
T KOG0299|consen  281 TLYGHQDGVL----------GIDALSRER-----CVTVGGRD-----RTVRLWKIPEESQLI--------FRGGEGSIDC  332 (479)
T ss_pred             HHhCCcccee----------eechhcccc-----eEEecccc-----ceeEEEeccccceee--------eeCCCCCeee
Confidence            6667776665          443222222     56666677     999999995543221        1145567888


Q ss_pred             EEEec
Q 026295          232 VAWAL  236 (240)
Q Consensus       232 v~~sp  236 (240)
                      ++|=.
T Consensus       333 v~~In  337 (479)
T KOG0299|consen  333 VAFIN  337 (479)
T ss_pred             EEEec
Confidence            87743

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.78  E-value=4.4e-17  Score=126.62  Aligned_cols=189  Identities=15%  Similarity=0.216  Sum_probs=143.0

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC--------C-----------Cc--------E--------E
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS--------S-----------SS--------F--------T   47 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~--------~-----------~~--------~--------~   47 (240)
                      +....|++.|.+++.-.+|.+|- |+.|+.|..||-.-..        +           +.        .        .
T Consensus       281 k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~  359 (626)
T KOG2106|consen  281 KQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG  359 (626)
T ss_pred             eEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence            34458999999999999997665 9999999999842110        0           00        0        0


Q ss_pred             EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE
Q 026295           48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        48 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                      -.....+|......++-.|.  ..++++++.|+.+++|+ ..        ++..+. .-..++.++.|+|  .| .++.|
T Consensus       360 f~~~v~gh~delwgla~hps--~~q~~T~gqdk~v~lW~-~~--------k~~wt~-~~~d~~~~~~fhp--sg-~va~G  424 (626)
T KOG2106|consen  360 FTLTVQGHGDELWGLATHPS--KNQLLTCGQDKHVRLWN-DH--------KLEWTK-IIEDPAECADFHP--SG-VVAVG  424 (626)
T ss_pred             ceEEEEecccceeeEEcCCC--hhheeeccCcceEEEcc-CC--------ceeEEE-EecCceeEeeccC--cc-eEEEe
Confidence            01233578888899999898  89999999999999999 32        332222 2346788999999  88 79999


Q ss_pred             eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          128 YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       128 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      +..|...+.|.++      ..++.. .....++.          ++.|+|++.     +||+|+.|     +.|+||.++
T Consensus       425 t~~G~w~V~d~e~------~~lv~~-~~d~~~ls----------~v~ysp~G~-----~lAvgs~d-----~~iyiy~Vs  477 (626)
T KOG2106|consen  425 TATGRWFVLDTET------QDLVTI-HTDNEQLS----------VVRYSPDGA-----FLAVGSHD-----NHIYIYRVS  477 (626)
T ss_pred             eccceEEEEeccc------ceeEEE-EecCCceE----------EEEEcCCCC-----EEEEecCC-----CeEEEEEEC
Confidence            9999999999986      344333 22255566          899999998     99999999     999999999


Q ss_pred             cCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          208 EAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ....++......     |.++|+.+.||+|+.
T Consensus       478 ~~g~~y~r~~k~-----~gs~ithLDwS~Ds~  504 (626)
T KOG2106|consen  478 ANGRKYSRVGKC-----SGSPITHLDWSSDSQ  504 (626)
T ss_pred             CCCcEEEEeeee-----cCceeEEeeecCCCc
Confidence            887666555443     337999999999974

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=5.8e-18  Score=125.54  Aligned_cols=177  Identities=14%  Similarity=0.223  Sum_probs=131.8

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      ..+|++-.+|.|++||..     +++.+..++++...++.+.|.....++.+.+++.||+|++||++....     ....
T Consensus        41 ~~vav~lSngsv~lyd~~-----tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a~~  110 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKG-----TGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SARI  110 (376)
T ss_pred             eeEEEEecCCeEEEEecc-----chhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hhhe
Confidence            468899999999999998     778899999999999999997743478899999999999999987632     3333


Q ss_pred             Eeeecc-ccEEeEEEeecCCCcEEEEEe----CCCcEEEEEecCcccccceeEEee-eecccceeeccccccceeeeEEE
Q 026295          102 SFESTS-TQVLDVQFGVSSTSLKLVAAY----SDGHVKVYELLDPLILKNWQLQAE-FQNAIDSVTMFRKASCISASISW  175 (240)
Q Consensus       102 ~~~~~~-~~v~~~~~~~~~~~~~l~~~~----~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~v~~  175 (240)
                      .+..+. .+..+++...  +++.+++|+    .+-.|.+||.|...     +++.. ...|...|+          +++|
T Consensus       111 ~~~~~~~~~f~~ld~nc--k~~ii~~GtE~~~s~A~v~lwDvR~~q-----q~l~~~~eSH~DDVT----------~lrF  173 (376)
T KOG1188|consen  111 SWTQQSGTPFICLDLNC--KKNIIACGTELTRSDASVVLWDVRSEQ-----QLLRQLNESHNDDVT----------QLRF  173 (376)
T ss_pred             eccCCCCCcceEeeccC--cCCeEEeccccccCceEEEEEEecccc-----chhhhhhhhccCcce----------eEEe
Confidence            344443 3455555544  667777765    56789999999732     21222 246777777          9999


Q ss_pred             eCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          176 NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       176 ~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +|..+.    +|++|+.|     |.|.|||.......-.+...+    .|...|..+.|.-++
T Consensus       174 HP~~pn----lLlSGSvD-----GLvnlfD~~~d~EeDaL~~vi----N~~sSI~~igw~~~~  223 (376)
T KOG1188|consen  174 HPSDPN----LLLSGSVD-----GLVNLFDTKKDNEEDALLHVI----NHGSSIHLIGWLSKK  223 (376)
T ss_pred             cCCCCC----eEEeeccc-----ceEEeeecCCCcchhhHHHhh----cccceeeeeeeecCC
Confidence            999865    99999999     999999997664433333333    266789999997654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.78  E-value=4.8e-19  Score=148.72  Aligned_cols=191  Identities=17%  Similarity=0.287  Sum_probs=142.6

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ....|.+.|..+.|++.+ ++||+|+.||.|.|||+.+.... ...-  -..-.+.|.+++|+.. ..++|++++.+|.+
T Consensus       111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~~~~--~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-FTPG--SQAPPSEIKCLSWNRK-VSHILASGSPSGRA  186 (1049)
T ss_pred             hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-CCCC--CCCCcccceEeccchh-hhHHhhccCCCCCc
Confidence            456799999999999966 59999999999999999864311 0110  1123467999999765 46789999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeecc--ccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeeccc
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTS--TQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .|||++..       +++-.+..+.  ..+..++|+|... ..+++++.|   -.|.+||+|..     -...+.++.|.
T Consensus       187 ~iWDlr~~-------~pii~ls~~~~~~~~S~l~WhP~~a-Tql~~As~dd~~PviqlWDlR~a-----ssP~k~~~~H~  253 (1049)
T KOG0307|consen  187 VIWDLRKK-------KPIIKLSDTPGRMHCSVLAWHPDHA-TQLLVASGDDSAPVIQLWDLRFA-----SSPLKILEGHQ  253 (1049)
T ss_pred             eeccccCC-------CcccccccCCCccceeeeeeCCCCc-eeeeeecCCCCCceeEeeccccc-----CCchhhhcccc
Confidence            99999876       5555555432  4578999999422 346666544   46899999864     35566677887


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..+-          ++.|++....    +|++++.|     +.|.+|+..+++    .+.++..   .++++.++.|+|-
T Consensus       254 ~Gil----------slsWc~~D~~----lllSsgkD-----~~ii~wN~~tgE----vl~~~p~---~~nW~fdv~w~pr  307 (1049)
T KOG0307|consen  254 RGIL----------SLSWCPQDPR----LLLSSGKD-----NRIICWNPNTGE----VLGELPA---QGNWCFDVQWCPR  307 (1049)
T ss_pred             ccee----------eeccCCCCch----hhhcccCC-----CCeeEecCCCce----EeeecCC---CCcceeeeeecCC
Confidence            7777          8999998843    89999999     999999998865    3334443   4559999999984

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.78  E-value=1.1e-18  Score=130.37  Aligned_cols=158  Identities=13%  Similarity=0.201  Sum_probs=126.1

Q ss_pred             cceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      +.|.++.|+|-. ..|++|..|+.|.|||+.     +..++..+- .+...+.|+|+|.  +-.|+++..|..+..||++
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R-----~~~Pl~KVi-~~mRTN~IswnPe--afnF~~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLR-----QASPLKKVI-LTMRTNTICWNPE--AFNFVAANEDHNLYTYDMR  259 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecc-----cCCccceee-eeccccceecCcc--ccceeeccccccceehhhh
Confidence            578999999955 688899999999999998     344555443 2455678999997  8889999999999999998


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      ...      .++..+.+|.+.|..++|+|  .|+-+++|+.|.+|+||..+....   ....     |.       +...
T Consensus       260 ~l~------~p~~v~~dhvsAV~dVdfsp--tG~EfvsgsyDksIRIf~~~~~~S---RdiY-----ht-------kRMq  316 (433)
T KOG0268|consen  260 NLS------RPLNVHKDHVSAVMDVDFSP--TGQEFVSGSYDKSIRIFPVNHGHS---RDIY-----HT-------KRMQ  316 (433)
T ss_pred             hhc------ccchhhcccceeEEEeccCC--CcchhccccccceEEEeecCCCcc---hhhh-----hH-------hhhh
Confidence            764      68888999999999999999  999999999999999999875210   0100     11       1222


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .|.+|.|+.+..     ++++|+.|     +.|++|....
T Consensus       317 ~V~~Vk~S~Dsk-----yi~SGSdd-----~nvRlWka~A  346 (433)
T KOG0268|consen  317 HVFCVKYSMDSK-----YIISGSDD-----GNVRLWKAKA  346 (433)
T ss_pred             eeeEEEEecccc-----EEEecCCC-----cceeeeecch
Confidence            345899999987     88888888     9999998754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.78  E-value=1.1e-17  Score=136.72  Aligned_cols=182  Identities=16%  Similarity=0.251  Sum_probs=150.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe---eecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT---KVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ..+..+++++.++.|++.+.|...|.|.+|+++     .+.....+   ..|.++|..++....  ++.+++++.+|.++
T Consensus       446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQ-----SGi~r~sf~~~~ah~~~V~gla~D~~--n~~~vsa~~~Gilk  518 (910)
T KOG1539|consen  446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQ-----SGIHRKSFGDSPAHKGEVTGLAVDGT--NRLLVSAGADGILK  518 (910)
T ss_pred             ccCcceEEEEEeccCceEEEeccCCeEEEEEcc-----cCeeecccccCccccCceeEEEecCC--CceEEEccCcceEE
Confidence            344689999999999999999999999999998     55555566   479999999999777  88999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      .||+...       ..+..++. ...+..+..+.  ....++.+..|-.|+++|..+      ...+.+|.+|...+.  
T Consensus       519 fw~f~~k-------~l~~~l~l-~~~~~~iv~hr--~s~l~a~~~ddf~I~vvD~~t------~kvvR~f~gh~nrit--  580 (910)
T KOG1539|consen  519 FWDFKKK-------VLKKSLRL-GSSITGIVYHR--VSDLLAIALDDFSIRVVDVVT------RKVVREFWGHGNRIT--  580 (910)
T ss_pred             EEecCCc-------ceeeeecc-CCCcceeeeee--hhhhhhhhcCceeEEEEEchh------hhhhHHhhcccccee--
Confidence            9999875       45555543 35667777766  777789999999999999987      677788888888877  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              +++|+|++.     .|++++.|     ++||+||+.++...    ..+.    -..+.+.+.|||++-
T Consensus       581 --------d~~FS~Dgr-----WlisasmD-----~tIr~wDlpt~~lI----D~~~----vd~~~~sls~SPngD  630 (910)
T KOG1539|consen  581 --------DMTFSPDGR-----WLISASMD-----STIRTWDLPTGTLI----DGLL----VDSPCTSLSFSPNGD  630 (910)
T ss_pred             --------eeEeCCCCc-----EEEEeecC-----CcEEEEeccCccee----eeEe----cCCcceeeEECCCCC
Confidence                    999999998     99999999     99999999987532    2221    334789999999873

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.77  E-value=2.7e-19  Score=135.45  Aligned_cols=184  Identities=14%  Similarity=0.210  Sum_probs=146.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|.+.|..+.|-++...|++|+.|..|++|+....   ....+.++.+..+.|+.+.|.++  +..+++++.|+.+++
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~---k~~~~~tLaGs~g~it~~d~d~~--~~~~iAas~d~~~r~  245 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGE---KSELISTLAGSLGNITSIDFDSD--NKHVIAASNDKNLRL  245 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccc---hhhhhhhhhccCCCcceeeecCC--CceEEeecCCCceee
Confidence            5679999999999999899999999999999999854   34577788888899999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      |++...       +...++.+|+..|+++.|.-  ....+++|+.|.+|++||+..      ..+..++-...       
T Consensus       246 Wnvd~~-------r~~~TLsGHtdkVt~ak~~~--~~~~vVsgs~DRtiK~WDl~k------~~C~kt~l~~S-------  303 (459)
T KOG0288|consen  246 WNVDSL-------RLRHTLSGHTDKVTAAKFKL--SHSRVVSGSADRTIKLWDLQK------AYCSKTVLPGS-------  303 (459)
T ss_pred             eeccch-------hhhhhhcccccceeeehhhc--cccceeeccccchhhhhhhhh------hheeccccccc-------
Confidence            999876       88899999999999999976  555599999999999999987      34443322111       


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                          .+++|...+.       .+++|..|     ++||.||.+......    +.+.   + +.|++|..++++.
T Consensus       304 ----~cnDI~~~~~-------~~~SgH~D-----kkvRfwD~Rs~~~~~----sv~~---g-g~vtSl~ls~~g~  354 (459)
T KOG0288|consen  304 ----QCNDIVCSIS-------DVISGHFD-----KKVRFWDIRSADKTR----SVPL---G-GRVTSLDLSMDGL  354 (459)
T ss_pred             ----cccceEecce-------eeeecccc-----cceEEEeccCCceee----Eeec---C-cceeeEeeccCCe
Confidence                1124554422       57778888     999999998876432    2231   2 2899998888763

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.77  E-value=5.2e-18  Score=135.28  Aligned_cols=122  Identities=20%  Similarity=0.356  Sum_probs=106.4

Q ss_pred             cceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295           10 KGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus        10 ~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      ..|+.++|+| |..+||.++.||.|+||.+..++-.  ...+-..+..|...|+++.|.|- ..+.|++++.|.+|++||
T Consensus       628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPL-AadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPL-AADVLAVASYDSTIELWD  706 (1012)
T ss_pred             ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecch-hhhHhhhhhccceeeeee
Confidence            4789999999 6789999999999999999755321  33455677889999999999886 468899999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      +.+.       .....+.+|+..|..++|+|  +|+.+++.+.||+|++|+.++.
T Consensus       707 l~~~-------~~~~~l~gHtdqIf~~AWSp--dGr~~AtVcKDg~~rVy~Prs~  752 (1012)
T KOG1445|consen  707 LANA-------KLYSRLVGHTDQIFGIAWSP--DGRRIATVCKDGTLRVYEPRSR  752 (1012)
T ss_pred             hhhh-------hhhheeccCcCceeEEEECC--CCcceeeeecCceEEEeCCCCC
Confidence            9887       67778899999999999999  9999999999999999998864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.76  E-value=1.5e-17  Score=122.73  Aligned_cols=186  Identities=15%  Similarity=0.203  Sum_probs=133.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-----eecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-----KVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      +..+++|+|||.+|++|.. .+|++||+..++..  ......     .+..+.+.+++|+|. ....++.++.-..+-||
T Consensus       160 aAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~--c~vy~t~~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy  235 (406)
T KOG2919|consen  160 AAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRD--CPVYTTVTKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIY  235 (406)
T ss_pred             hheeEEecCCCCeEeeccc-ceEEEeeccCCCCC--CcchhhhhcccccccceeeeeeccCC-CCcceeeecccceeeeE
Confidence            4568999999999988765 79999999644321  111111     244678999999998 34578888888888888


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      .-...       .+++.+-+|.+.|+.++|++  +|+.|.+|. .|-.|..||++..     ..++-.+..|.....   
T Consensus       236 ~~~~~-------~pl~llggh~gGvThL~~~e--dGn~lfsGaRk~dkIl~WDiR~~-----~~pv~~L~rhv~~TN---  298 (406)
T KOG2919|consen  236 NDDGR-------RPLQLLGGHGGGVTHLQWCE--DGNKLFSGARKDDKILCWDIRYS-----RDPVYALERHVGDTN---  298 (406)
T ss_pred             ecCCC-------CceeeecccCCCeeeEEecc--CcCeecccccCCCeEEEEeehhc-----cchhhhhhhhccCcc---
Confidence            77665       78888889999999999999  999999887 4678999999974     344444544433110   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                            ..|-|.-+..   +..|++|+.|     |.|++||+...-. +..     ....|+..|+.|+++|.
T Consensus       299 ------QRI~FDld~~---~~~LasG~td-----G~V~vwdlk~~gn-~~s-----v~~~~sd~vNgvslnP~  351 (406)
T KOG2919|consen  299 ------QRILFDLDPK---GEILASGDTD-----GSVRVWDLKDLGN-EVS-----VTGNYSDTVNGVSLNPI  351 (406)
T ss_pred             ------ceEEEecCCC---CceeeccCCC-----ccEEEEecCCCCC-ccc-----ccccccccccceecCcc
Confidence                  1455544433   3489999998     9999999987322 111     22247778999999985

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.76  E-value=3.2e-17  Score=119.82  Aligned_cols=160  Identities=20%  Similarity=0.286  Sum_probs=119.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      |....|+++|.+++|+.+|..+++|+.|+.+++||+.     +. .+..+..|.++|..+.|.+.-.-..|++|+.|.+|
T Consensus        66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~-----S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTl  139 (347)
T KOG0647|consen   66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA-----SG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTL  139 (347)
T ss_pred             hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEcc-----CC-CeeeeeecccceeEEEEecCCCcceeEecccccce
Confidence            4467899999999999999999999999999999998     44 45667789999999999877212479999999999


Q ss_pred             EEEEeeeccC---------------------------------------------CCcccE-------------------
Q 026295           83 LLWEEIVEDA---------------------------------------------QPLQWK-------------------   98 (240)
Q Consensus        83 ~iwd~~~~~~---------------------------------------------~~~~~~-------------------   98 (240)
                      +.||.+....                                             ....|+                   
T Consensus       140 KfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE  219 (347)
T KOG0647|consen  140 KFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE  219 (347)
T ss_pred             eecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence            9999664321                                             001111                   


Q ss_pred             --------------EEEEeeecc---------ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           99 --------------LCKSFESTS---------TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        99 --------------~~~~~~~~~---------~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                                    .-.+|+.|+         -.|.+|+|+|  ....|++++.||+..+||-..      ...+.....
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP--~hgtlvTaGsDGtf~FWDkda------r~kLk~s~~  291 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP--VHGTLVTAGSDGTFSFWDKDA------RTKLKTSET  291 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec--ccceEEEecCCceEEEecchh------hhhhhccCc
Confidence                          112234443         2467899999  777899999999999999765      233344456


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      +..+|+          +.+|+.++.     ++|-+.
T Consensus       292 ~~qpIt----------cc~fn~~G~-----ifaYA~  312 (347)
T KOG0647|consen  292 HPQPIT----------CCSFNRNGS-----IFAYAL  312 (347)
T ss_pred             CCCccc----------eeEecCCCC-----EEEEEe
Confidence            666676          888998887     665554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1.8e-16  Score=126.98  Aligned_cols=190  Identities=17%  Similarity=0.178  Sum_probs=147.6

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ....++|.+++.+|.+..++.|+.||.+..++....   ..+....+...+++|.+++|+|+  +..+++|+.||.|++|
T Consensus       107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~---~I~~~r~l~rq~sRvLslsw~~~--~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD---KITYKRSLMRQKSRVLSLSWNPT--GTKIAGGSIDGVIRIW  181 (691)
T ss_pred             cCCCcceeEEEeCCccceEEeecCCceEEEEecCCc---eEEEEeecccccceEEEEEecCC--ccEEEecccCceEEEE
Confidence            345679999999999999999999997777776532   34444556667899999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEee------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           86 EEIVEDAQPLQWKLCKSFE------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      |...+..     ..+.+.+      ....-|+++.|-.  ++. +++|.+.|+|++||...      +.+++.+..|...
T Consensus       182 d~~~~~t-----~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~t-I~sgDS~G~V~FWd~~~------gTLiqS~~~h~ad  247 (691)
T KOG2048|consen  182 DVKSGQT-----LHIITMQLDRLSKREPTIVWSVLFLR--DST-IASGDSAGTVTFWDSIF------GTLIQSHSCHDAD  247 (691)
T ss_pred             EcCCCce-----EEEeeecccccccCCceEEEEEEEee--cCc-EEEecCCceEEEEcccC------cchhhhhhhhhcc
Confidence            9987632     1111111      1345678888865  665 99999999999999987      6777777777766


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      +-          +++-.++..     ++.+++.|     +.|.-|...+...+|.....   ...|...|++++-.++
T Consensus       248 Vl----------~Lav~~~~d-----~vfsaGvd-----~~ii~~~~~~~~~~wv~~~~---r~~h~hdvrs~av~~~  302 (691)
T KOG2048|consen  248 VL----------ALAVADNED-----RVFSAGVD-----PKIIQYSLTTNKSEWVINSR---RDLHAHDVRSMAVIEN  302 (691)
T ss_pred             ee----------EEEEcCCCC-----eEEEccCC-----CceEEEEecCCccceeeecc---ccCCcccceeeeeecc
Confidence            65          888888877     89999999     99999999887776655433   3357778999887665

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=5.3e-17  Score=119.51  Aligned_cols=195  Identities=18%  Similarity=0.231  Sum_probs=133.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEE--------------------
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKV--------------------   62 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~--------------------   62 (240)
                      +.+..|-.+|.+++||++|++|+|++.|..|.+||+.++.     ++..+.- ..+|+..                    
T Consensus        59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs-----~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~  132 (405)
T KOG1273|consen   59 RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS-----PLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPV  132 (405)
T ss_pred             hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC-----ceeEEEc-cCccceeeeccccCCeEEEEEecCCcE
Confidence            5578899999999999999999999999999999998542     2222211 1111111                    


Q ss_pred             ---------------------------EEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecc-ccEEeEE
Q 026295           63 ---------------------------VWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTS-TQVLDVQ  114 (240)
Q Consensus        63 ---------------------------~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~  114 (240)
                                                 .|.+.  |+++++|...|.+.+++..+.       +++..++-.. ..|..+.
T Consensus       133 vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~--g~yIitGtsKGkllv~~a~t~-------e~vas~rits~~~IK~I~  203 (405)
T KOG1273|consen  133 VIDFSDPKHSVLPKDDDGDLNSSASHGVFDRR--GKYIITGTSKGKLLVYDAETL-------ECVASFRITSVQAIKQII  203 (405)
T ss_pred             EEEecCCceeeccCCCccccccccccccccCC--CCEEEEecCcceEEEEecchh-------eeeeeeeechheeeeEEE
Confidence                                       13333  889999999999999999876       8888888665 8899999


Q ss_pred             EeecCCCcEEEEEeCCCcEEEEEecCccccc---ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          115 FGVSSTSLKLVAAYSDGHVKVYELLDPLILK---NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      ++.  .|.+|+.-+.|..|+.|+++.-...+   ..++.++++......        .=++++|+-++.     |++.++
T Consensus       204 ~s~--~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~--------~Wk~ccfs~dge-----Yv~a~s  268 (405)
T KOG1273|consen  204 VSR--KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKL--------QWKKCCFSGDGE-----YVCAGS  268 (405)
T ss_pred             Eec--cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhh--------hhhheeecCCcc-----EEEecc
Confidence            988  99999999999999999987422211   112222222111100        002677887775     666665


Q ss_pred             cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          192 NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       192 ~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      .--    ..++||.-..+.    +++.|.+.+|  ....+|.|+|-
T Consensus       269 ~~a----HaLYIWE~~~Gs----LVKILhG~kg--E~l~DV~whp~  304 (405)
T KOG1273|consen  269 ARA----HALYIWEKSIGS----LVKILHGTKG--EELLDVNWHPV  304 (405)
T ss_pred             ccc----eeEEEEecCCcc----eeeeecCCch--hheeecccccc
Confidence            432    789999987765    4444444332  36788888874

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.76  E-value=5.7e-18  Score=131.37  Aligned_cols=178  Identities=12%  Similarity=0.117  Sum_probs=136.1

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   92 (240)
                      .|++......++++|+..++|+|||+.     .-.+.+.+++|...|+++.|+..  ..+|++++..|.|.|..+.++  
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-----~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih~~~t~--  153 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSGCVKIWDLR-----AKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIHGTKTK--  153 (673)
T ss_pred             HHHhhhhcceeeeccCcCceeeehhhH-----HHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEEecccC--
Confidence            455555555899999999999999998     44577788999999999999888  899999999999999999876  


Q ss_pred             CCcccEEEEEeeec-cccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEe-eeecccceeeccccccce
Q 026295           93 QPLQWKLCKSFEST-STQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        93 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~  169 (240)
                           ....+|... ...|+-+.|+|  ..+ +|.+++.+|.|.+||....      ..+. -...|..+.+        
T Consensus       154 -----~~tt~f~~~sgqsvRll~ys~--skr~lL~~asd~G~VtlwDv~g~------sp~~~~~~~HsAP~~--------  212 (673)
T KOG4378|consen  154 -----QKTTTFTIDSGQSVRLLRYSP--SKRFLLSIASDKGAVTLWDVQGM------SPIFHASEAHSAPCR--------  212 (673)
T ss_pred             -----ccccceecCCCCeEEEeeccc--ccceeeEeeccCCeEEEEeccCC------CcccchhhhccCCcC--------
Confidence                 555556543 45677899998  444 4778999999999999862      2222 2234555544        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                        .+||+|...    .+|++-+.|     .+|.+||.+.....-.+.        -+.+...|+|+|+|.
T Consensus       213 --gicfspsne----~l~vsVG~D-----kki~~yD~~s~~s~~~l~--------y~~Plstvaf~~~G~  263 (673)
T KOG4378|consen  213 --GICFSPSNE----ALLVSVGYD-----KKINIYDIRSQASTDRLT--------YSHPLSTVAFSECGT  263 (673)
T ss_pred             --cceecCCcc----ceEEEeccc-----ceEEEeecccccccceee--------ecCCcceeeecCCce
Confidence              899999885    388999999     999999988543222221        223899999999983

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=1.8e-17  Score=131.09  Aligned_cols=198  Identities=17%  Similarity=0.187  Sum_probs=131.8

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC----
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG----   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~----   80 (240)
                      +.+|++.|+++..+|.|..||+|+.||+|+||.+.     ++.++.++.. .+.|.+|+|+|...-.+|+++-...    
T Consensus       396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~-----TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIA-----TGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             EeccCCeEEEEEecCCcceeeecCCCCcEEEEEee-----cceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEe
Confidence            56899999999999999999999999999999998     6677776653 4567777777652222333332221    


Q ss_pred             -----------------------------------------------------------------------------eEE
Q 026295           81 -----------------------------------------------------------------------------SLL   83 (240)
Q Consensus        81 -----------------------------------------------------------------------------~v~   83 (240)
                                                                                                   .|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence                                                                                         222


Q ss_pred             EEEeeeccCCC-----------cccEE------------EEE-----------eeeccccEEeEEEeecCCCcEEEEEeC
Q 026295           84 LWEEIVEDAQP-----------LQWKL------------CKS-----------FESTSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        84 iwd~~~~~~~~-----------~~~~~------------~~~-----------~~~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      |.++.....+.           ..|.+            ++.           +......|..++.+|  .|..|+.++.
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp--~GDnli~gs~  627 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP--NGDNLILGSY  627 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC--CCCeEEEecC
Confidence            22222110000           00000            000           001235677888888  8889999999


Q ss_pred             CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      |+.+..+|+.-.     -++.+.+.-|...++          +|+|++.-.     +|++|+.|     +.+.||.-.-.
T Consensus       628 d~k~~WfDldls-----skPyk~lr~H~~avr----------~Va~H~ryP-----Lfas~sdD-----gtv~Vfhg~VY  682 (733)
T KOG0650|consen  628 DKKMCWFDLDLS-----SKPYKTLRLHEKAVR----------SVAFHKRYP-----LFASGSDD-----GTVIVFHGMVY  682 (733)
T ss_pred             CCeeEEEEcccC-----cchhHHhhhhhhhhh----------hhhhccccc-----eeeeecCC-----CcEEEEeeeee
Confidence            999999998753     345666777877777          999999988     89999988     99999975322


Q ss_pred             C-----CCcceeEeeecCCCCCCc----eEEEEEecCC
Q 026295          210 H-----NRWLPVAELALPEDRSDE----VYAVAWALNI  238 (240)
Q Consensus       210 ~-----~~~~~~~~~~~~~~h~~~----v~~v~~sp~~  238 (240)
                      .     ....+++.|.   +|...    |.++.|+|..
T Consensus       683 ~Dl~qnpliVPlK~L~---gH~~~~~~gVLd~~wHP~q  717 (733)
T KOG0650|consen  683 NDLLQNPLIVPLKRLR---GHEKTNDLGVLDTIWHPRQ  717 (733)
T ss_pred             hhhhcCCceEeeeecc---CceeecccceEeecccCCC
Confidence            1     1223344444   55545    8999999964

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.76  E-value=1.9e-17  Score=135.24  Aligned_cols=158  Identities=17%  Similarity=0.233  Sum_probs=135.1

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..|.++|+.++.+.-++.+++++.+|.+++||..+     ..++..++- ...+..+.++..  ..+++.+..|-.|+++
T Consensus       490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~-----k~l~~~l~l-~~~~~~iv~hr~--s~l~a~~~ddf~I~vv  561 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKK-----KVLKKSLRL-GSSITGIVYHRV--SDLLAIALDDFSIRVV  561 (910)
T ss_pred             ccccCceeEEEecCCCceEEEccCcceEEEEecCC-----cceeeeecc-CCCcceeeeeeh--hhhhhhhcCceeEEEE
Confidence            47999999999999999999999999999999984     346666653 466778888777  7889999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      |..+.       +.++.|.+|...|+.++|||  +|++|++++.|++|++||+.+      ..++..+...... .    
T Consensus       562 D~~t~-------kvvR~f~gh~nritd~~FS~--DgrWlisasmD~tIr~wDlpt------~~lID~~~vd~~~-~----  621 (910)
T KOG1539|consen  562 DVVTR-------KVVREFWGHGNRITDMTFSP--DGRWLISASMDSTIRTWDLPT------GTLIDGLLVDSPC-T----  621 (910)
T ss_pred             Echhh-------hhhHHhhccccceeeeEeCC--CCcEEEEeecCCcEEEEeccC------cceeeeEecCCcc-e----
Confidence            99877       88999999999999999999  999999999999999999988      6777666443222 2    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                            +++|+|++.     +|||...|-    .-|++|.=
T Consensus       622 ------sls~SPngD-----~LAT~Hvd~----~gIylWsN  647 (910)
T KOG1539|consen  622 ------SLSFSPNGD-----FLATVHVDQ----NGIYLWSN  647 (910)
T ss_pred             ------eeEECCCCC-----EEEEEEecC----ceEEEEEc
Confidence                  799999998     999999875    68999963

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.1e-17  Score=125.59  Aligned_cols=183  Identities=20%  Similarity=0.273  Sum_probs=126.8

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   92 (240)
                      .+++|+++|..|++|+.||++|||+..     ....+.....|.+.|.++.|+|+  |++|++.+.| ..+||+.+.+  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~P-----s~~t~l~e~~~~~eV~DL~FS~d--gk~lasig~d-~~~VW~~~~g--  217 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWP-----SMLTILEEIAHHAEVKDLDFSPD--GKFLASIGAD-SARVWSVNTG--  217 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecC-----cchhhhhhHhhcCccccceeCCC--CcEEEEecCC-ceEEEEeccC--
Confidence            679999999999999999999999976     34556666678999999999999  9999999999 8999999876  


Q ss_pred             CCcccEEEEEee--eccccEEeEEEeecCCC----cEE-EEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           93 QPLQWKLCKSFE--STSTQVLDVQFGVSSTS----LKL-VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        93 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~----~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                           .+++...  ........+.|+.  ++    .++ +....-+.|+.|++..-......... +.......++    
T Consensus       218 -----~~~a~~t~~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~-~~~~~~~siS----  285 (398)
T KOG0771|consen  218 -----AALARKTPFSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLR-KKIKRFKSIS----  285 (398)
T ss_pred             -----chhhhcCCcccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchh-hhhhccCcce----
Confidence                 3333322  2223345566765  43    223 33334466778777541000000111 1111122233    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                            +++-++++.     ++|.|+.|     |.|-||+..+-+... .     ..+.|...|+.|.|+||.+
T Consensus       286 ------sl~VS~dGk-----f~AlGT~d-----GsVai~~~~~lq~~~-~-----vk~aH~~~VT~ltF~Pdsr  337 (398)
T KOG0771|consen  286 ------SLAVSDDGK-----FLALGTMD-----GSVAIYDAKSLQRLQ-Y-----VKEAHLGFVTGLTFSPDSR  337 (398)
T ss_pred             ------eEEEcCCCc-----EEEEeccC-----CcEEEEEeceeeeeE-e-----ehhhheeeeeeEEEcCCcC
Confidence                  888999998     99999998     999999987644221 1     2235888999999999975

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=5.8e-19  Score=144.21  Aligned_cols=118  Identities=15%  Similarity=0.264  Sum_probs=108.3

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.|.+|-++|.|+.|+..|.++++|+.|..++||...     +..++....+|.+.|+.++.+..  ..++++++.|..
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~e-----t~~~lAs~rGhs~ditdlavs~~--n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSME-----TARCLASCRGHSGDITDLAVSSN--NTMIAAASNDKV  255 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeecc-----chhhhccCCCCccccchhccchh--hhhhhhcccCce
Confidence            35688899999999999999999999999999999987     77899999999999999999877  788999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      |++|.+..+       .++..+.+|++.|++++|+|      ..+.+.||++++||.+
T Consensus       256 IrvWrl~~~-------~pvsvLrghtgavtaiafsP------~~sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  256 IRVWRLPDG-------APVSVLRGHTGAVTAIAFSP------RASSSDDGTCRIWDAR  300 (1113)
T ss_pred             EEEEecCCC-------chHHHHhccccceeeeccCc------cccCCCCCceEecccc
Confidence            999999877       88999999999999999999      3477889999999987

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.74  E-value=2e-17  Score=129.52  Aligned_cols=173  Identities=15%  Similarity=0.281  Sum_probs=133.3

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ++.+..|.++|.+-+|+|+|.-|++.++||.|+||...+.      +..++.-...+|+|++|.|+  ++-++-+ ..+.
T Consensus        97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------LRStl~Q~~~~v~c~~W~p~--S~~vl~c-~g~h  167 (737)
T KOG1524|consen   97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------LRSTVVQNEESIRCARWAPN--SNSIVFC-QGGH  167 (737)
T ss_pred             hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------HHHHHhhcCceeEEEEECCC--CCceEEe-cCCe
Confidence            3557889999999999999999999999999999987632      33334445678999999998  5544433 2346


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      +.|--+...       ..+-..+.|.+-|.++.|+|  ...++++|+.|-..++||..       +.....-..|..++.
T Consensus       168 ~~IKpL~~n-------~k~i~WkAHDGiiL~~~W~~--~s~lI~sgGED~kfKvWD~~-------G~~Lf~S~~~ey~IT  231 (737)
T KOG1524|consen  168 ISIKPLAAN-------SKIIRWRAHDGLVLSLSWST--QSNIIASGGEDFRFKIWDAQ-------GANLFTSAAEEYAIT  231 (737)
T ss_pred             EEEeecccc-------cceeEEeccCcEEEEeecCc--cccceeecCCceeEEeeccc-------CcccccCChhcccee
Confidence            666666544       55667788999999999999  88899999999999999976       355555567777777


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                +++|+|+.      .++.++.      ++.|+   ..               ...+.|..++|||||.
T Consensus       232 ----------Sva~npd~------~~~v~S~------nt~R~---~~---------------p~~GSifnlsWS~DGT  269 (737)
T KOG1524|consen  232 ----------SVAFNPEK------DYLLWSY------NTARF---SS---------------PRVGSIFNLSWSADGT  269 (737)
T ss_pred             ----------eeeecccc------ceeeeee------eeeee---cC---------------CCccceEEEEEcCCCc
Confidence                      99999994      6888887      56661   11               1334899999999984

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.74  E-value=1.1e-16  Score=118.04  Aligned_cols=179  Identities=16%  Similarity=0.166  Sum_probs=138.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+++.|+..|+++.|+|..++|++|+.|..-+||.....+  ++++...+..++..++++.|+|.  ++.|++|+....|
T Consensus        49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~--~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~i  124 (361)
T KOG1523|consen   49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG--TWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLI  124 (361)
T ss_pred             eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC--eeccceeEEEeccceeeEeecCc--CceEEeccCccEE
Confidence            4578899999999999999999999999999999984333  88888888889999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC------c------ccccceeEE
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD------P------LILKNWQLQ  150 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~------~------~~~~~~~~~  150 (240)
                      .+|-++..+   .-|.....-+..++.|.+++|+|  ++-+|++|+.|+.++++..--      +      ....-+++.
T Consensus       125 sVcy~E~EN---dWWVsKhikkPirStv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm  199 (361)
T KOG1523|consen  125 SVCYYEQEN---DWWVSKHIKKPIRSTVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLM  199 (361)
T ss_pred             EEEEEeccc---ceehhhhhCCccccceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHH
Confidence            999987652   22233333345678899999999  999999999999999997421      0      001112222


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .++....+          .+..+.|+|++.     .|+-.+.|     ..+.+=|.....
T Consensus       200 ~E~~~~gg----------wvh~v~fs~sG~-----~lawv~Hd-----s~v~~~da~~p~  239 (361)
T KOG1523|consen  200 SEASSSGG----------WVHGVLFSPSGN-----RLAWVGHD-----STVSFVDAAGPS  239 (361)
T ss_pred             HhhccCCC----------ceeeeEeCCCCC-----EeeEecCC-----CceEEeecCCCc
Confidence            22222222          344999999998     89999999     999998876653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=4.7e-17  Score=123.16  Aligned_cols=204  Identities=10%  Similarity=0.034  Sum_probs=144.1

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC-CCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS-SSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |.+.+|.+.|+++.|+.++++||+|+.|..+++|++...- ..+.+++.... .|...|.++.|...  ...+.+|..++
T Consensus        50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~--N~~~~SG~~~~  127 (609)
T KOG4227|consen   50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE--NRFLYSGERWG  127 (609)
T ss_pred             hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC--CeeEecCCCcc
Confidence            5588999999999999999999999999999999986310 00223444333 35678999999887  78899999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +|.+.|+.+.       +.+..+.  ...+.|..+..+|  ..+.|++.+.++.|.+||.+...+....-+.   .....
T Consensus       128 ~VI~HDiEt~-------qsi~V~~~~~~~~~VY~m~~~P--~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---AN~~~  195 (609)
T KOG4227|consen  128 TVIKHDIETK-------QSIYVANENNNRGDVYHMDQHP--TDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---ANSGK  195 (609)
T ss_pred             eeEeeecccc-------eeeeeecccCcccceeecccCC--CCceEEEEecCceEEEEeccCCCCCCceeee---cCCCc
Confidence            9999999876       4454443  3457899999999  7788999999999999999974333222221   11222


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ...          .+.|+|...    .+|++++..     +-+.+||.+.............+.......-..+-|+|+|
T Consensus       196 ~F~----------t~~F~P~~P----~Li~~~~~~-----~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G  256 (609)
T KOG4227|consen  196 NFY----------TAEFHPETP----ALILVNSET-----GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG  256 (609)
T ss_pred             cce----------eeeecCCCc----eeEEecccc-----CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence            223          788999885    389999988     9999999987554322111111111111123567888887


Q ss_pred             C
Q 026295          239 G  239 (240)
Q Consensus       239 ~  239 (240)
                      .
T Consensus       257 ~  257 (609)
T KOG4227|consen  257 N  257 (609)
T ss_pred             C
Confidence            4

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.72  E-value=5.4e-17  Score=130.26  Aligned_cols=175  Identities=14%  Similarity=0.240  Sum_probs=133.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      .|..++|-|||..|+.+.. ..+.|||..     .+..+.++++|...|++++|+.+  |..|++|+.|..|.+|...- 
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~n-----dG~llqtLKgHKDtVycVAys~d--GkrFASG~aDK~VI~W~~kl-   84 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTS-----DGTLLQPLKGHKDTVYCVAYAKD--GKRFASGSADKSVIIWTSKL-   84 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCC-----CcccccccccccceEEEEEEccC--CceeccCCCceeEEEecccc-
Confidence            7999999999988877755 478899998     66789999999999999999999  99999999999999999743 


Q ss_pred             cCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           91 DAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        91 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                               ...++ .|...|.++.|+|  -...|++++... .-+|...+       +.+.   .+...        +-
T Consensus        85 ---------EG~LkYSH~D~IQCMsFNP--~~h~LasCsLsd-FglWS~~q-------K~V~---K~kss--------~R  134 (1081)
T KOG1538|consen   85 ---------EGILKYSHNDAIQCMSFNP--ITHQLASCSLSD-FGLWSPEQ-------KSVS---KHKSS--------SR  134 (1081)
T ss_pred             ---------cceeeeccCCeeeEeecCc--hHHHhhhcchhh-ccccChhh-------hhHH---hhhhh--------ee
Confidence                     22222 4789999999999  778889888653 56887654       1111   11111        11


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +.+.+|..++.     +|+.|..+     |+|.|-+-..+.     ...+.-+.|-.++|++++|+|+.|
T Consensus       135 ~~~CsWtnDGq-----ylalG~~n-----GTIsiRNk~gEe-----k~~I~Rpgg~Nspiwsi~~~p~sg  189 (1081)
T KOG1538|consen  135 IICCSWTNDGQ-----YLALGMFN-----GTISIRNKNGEE-----KVKIERPGGSNSPIWSICWNPSSG  189 (1081)
T ss_pred             EEEeeecCCCc-----EEEEeccC-----ceEEeecCCCCc-----ceEEeCCCCCCCCceEEEecCCCC
Confidence            23788999988     99999999     999997543322     122333445667999999999875

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.72  E-value=2.3e-16  Score=126.65  Aligned_cols=201  Identities=14%  Similarity=0.242  Sum_probs=152.6

Q ss_pred             chhcccccceEEEEECCCCC---EEEEEeCCCcEEEEeCCCCC----------------CCcEEEEeE----------ee
Q 026295            3 KAVATLDKGTTSSSWNYCGQ---RLATGSTDGTLSIFDSPDPS----------------SSSFTCNLK----------TK   53 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~---~l~~~~~d~~i~iw~~~~~~----------------~~~~~~~~~----------~~   53 (240)
                      ..+.+|++.|.+++|...+.   +||++|.|..||||.+...+                .........          +.
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            35789999999999988654   89999999999999875332                001122212          24


Q ss_pred             ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE---EeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295           54 VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK---SFESTSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        54 ~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      +|+.-|+++.|.|.  +..|++++.|.++.+|......+   -|....   .+.+.........|+|  +++.+++-+.-
T Consensus       265 GHeDWV~sv~W~p~--~~~LLSASaDksmiiW~pd~~tG---iWv~~vRlGe~gg~a~GF~g~lw~~--n~~~ii~~g~~  337 (764)
T KOG1063|consen  265 GHEDWVYSVWWHPE--GLDLLSASADKSMIIWKPDENTG---IWVDVVRLGEVGGSAGGFWGGLWSP--NSNVIIAHGRT  337 (764)
T ss_pred             CcccceEEEEEccc--hhhheecccCcceEEEecCCccc---eEEEEEEeecccccccceeeEEEcC--CCCEEEEeccc
Confidence            89999999999999  88899999999999998765432   344332   2333445688899999  89999999999


Q ss_pred             CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       131 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      |-.++|....   ...|.....+.+|...|.          ++.|+|.+.     +|++.+.|     .+-|+|-.-..+
T Consensus       338 Gg~hlWkt~d---~~~w~~~~~iSGH~~~V~----------dv~W~psGe-----flLsvs~D-----QTTRlFa~wg~q  394 (764)
T KOG1063|consen  338 GGFHLWKTKD---KTFWTQEPVISGHVDGVK----------DVDWDPSGE-----FLLSVSLD-----QTTRLFARWGRQ  394 (764)
T ss_pred             CcEEEEeccC---ccceeeccccccccccce----------eeeecCCCC-----EEEEeccc-----cceeeecccccc
Confidence            9999998433   234666667778888887          999999998     99999999     999998766555


Q ss_pred             CCcceeEeeecCCCCCCceEEEEEec
Q 026295          211 NRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      ..|.....   +.-|+..++|++|-+
T Consensus       395 ~~wHEiaR---PQiHGyDl~c~~~vn  417 (764)
T KOG1063|consen  395 QEWHEIAR---PQIHGYDLTCLSFVN  417 (764)
T ss_pred             cceeeecc---cccccccceeeehcc
Confidence            55555443   334777999999987

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.71  E-value=1.5e-16  Score=122.14  Aligned_cols=169  Identities=12%  Similarity=0.090  Sum_probs=125.2

Q ss_pred             hcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +..|...|.++.|+|.. ..+.+.++||+|++=|++..   ..+.+..+..-.....++.|+..  ...++.+..=|.+.
T Consensus       230 f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~---i~e~v~s~~~d~~~fs~~d~~~e--~~~vl~~~~~G~f~  304 (498)
T KOG4328|consen  230 FTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN---ISEEVLSLDTDNIWFSSLDFSAE--SRSVLFGDNVGNFN  304 (498)
T ss_pred             eccCCccccceEecCCChhheeeeccCceeeeeeecch---hhHHHhhcCccceeeeeccccCC--CccEEEeecccceE
Confidence            55688899999999955 68999999999999999854   33344444333445677888776  56666776667999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||++...      .....+..|...|.+|+++|. ...+|++++.|++++|||++.-..-..  +......|...|.  
T Consensus       305 ~iD~R~~~------s~~~~~~lh~kKI~sv~~NP~-~p~~laT~s~D~T~kIWD~R~l~~K~s--p~lst~~HrrsV~--  373 (498)
T KOG4328|consen  305 VIDLRTDG------SEYENLRLHKKKITSVALNPV-CPWFLATASLDQTAKIWDLRQLRGKAS--PFLSTLPHRRSVN--  373 (498)
T ss_pred             EEEeecCC------ccchhhhhhhcccceeecCCC-CchheeecccCcceeeeehhhhcCCCC--cceecccccceee--
Confidence            99998764      234445567789999999995 445799999999999999986322211  1122234555554  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                              +..|+|.+.     .|+|-+.|     ..|+|||..
T Consensus       374 --------sAyFSPs~g-----tl~TT~~D-----~~IRv~dss  399 (498)
T KOG4328|consen  374 --------SAYFSPSGG-----TLLTTCQD-----NEIRVFDSS  399 (498)
T ss_pred             --------eeEEcCCCC-----ceEeeccC-----CceEEeecc
Confidence                    899999997     58888888     999999985

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.71  E-value=9e-15  Score=113.14  Aligned_cols=184  Identities=11%  Similarity=0.061  Sum_probs=120.0

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEEee
Q 026295           11 GTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWEEI   88 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~   88 (240)
                      .+..++|+|+++.++++ +.++.|++||+.     +.+.+..+.. ...+..++|+|+  +.+++++..++ .+.+||..
T Consensus        74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~-----~~~~~~~~~~-~~~~~~~~~~~d--g~~l~~~~~~~~~~~~~d~~  145 (300)
T TIGR03866        74 DPELFALHPNGKILYIANEDDNLVTVIDIE-----TRKVLAEIPV-GVEPEGMAVSPD--GKIVVNTSETTNMAHFIDTK  145 (300)
T ss_pred             CccEEEECCCCCEEEEEcCCCCeEEEEECC-----CCeEEeEeeC-CCCcceEEECCC--CCEEEEEecCCCeEEEEeCC
Confidence            35678999999877554 568999999998     4455555543 345678999999  99998887765 46777876


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      ..       +....... ......++|+|  ++.+|+++ ..++.|++||+.+      .+....+..+...+.+..   
T Consensus       146 ~~-------~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~~---  206 (300)
T TIGR03866       146 TY-------EIVDNVLV-DQRPRFAEFTA--DGKELWVSSEIGGTVSVIDVAT------RKVIKKITFEIPGVHPEA---  206 (300)
T ss_pred             CC-------eEEEEEEc-CCCccEEEECC--CCCEEEEEcCCCCEEEEEEcCc------ceeeeeeeeccccccccc---
Confidence            54       44433332 23456789998  88877554 4689999999987      344433322111111000   


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          168 CISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .....++|+|++.     +++++ +.+     +.|.+||..+..    ....+.    +...+.+++|+|++.
T Consensus       207 ~~~~~i~~s~dg~-----~~~~~~~~~-----~~i~v~d~~~~~----~~~~~~----~~~~~~~~~~~~~g~  261 (300)
T TIGR03866       207 VQPVGIKLTKDGK-----TAFVALGPA-----NRVAVVDAKTYE----VLDYLL----VGQRVWQLAFTPDEK  261 (300)
T ss_pred             CCccceEECCCCC-----EEEEEcCCC-----CeEEEEECCCCc----EEEEEE----eCCCcceEEECCCCC
Confidence            0112678999987     54444 344     789999986543    222222    233789999999985

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.70  E-value=1.4e-15  Score=112.53  Aligned_cols=176  Identities=19%  Similarity=0.231  Sum_probs=124.6

Q ss_pred             chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe---eecCccEEEEEEcCCCCCCEEEEEec
Q 026295            3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKT---KVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      +.+.+|...|+.+.|.|+. +++++|+.|.+||+|+++     +..++..+   .+|.+.|.++.|+++  |.++++++.
T Consensus       129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~-----~~~Cv~VfGG~egHrdeVLSvD~~~~--gd~i~ScGm  201 (385)
T KOG1034|consen  129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-----TDVCVAVFGGVEGHRDEVLSVDFSLD--GDRIASCGM  201 (385)
T ss_pred             cceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc-----CCeEEEEecccccccCcEEEEEEcCC--CCeeeccCC
Confidence            4578899999999999976 799999999999999999     66777766   479999999999999  999999999


Q ss_pred             CCeEEEEEeeeccC------------------------------------------------------C--CcccE----
Q 026295           79 DGSLLLWEEIVEDA------------------------------------------------------Q--PLQWK----   98 (240)
Q Consensus        79 d~~v~iwd~~~~~~------------------------------------------------------~--~~~~~----   98 (240)
                      |.++++|++...+-                                                      +  -.-|+    
T Consensus       202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl  281 (385)
T KOG1034|consen  202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKL  281 (385)
T ss_pred             cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchh
Confidence            99999999762100                                                      0  00011    


Q ss_pred             ---------------EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           99 ---------------LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        99 ---------------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                                     .+..+.-....|+-+.|.-..-+..||.|...|.|.+||++...+....++....  ....|   
T Consensus       282 ~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~--~~~tV---  356 (385)
T KOG1034|consen  282 EESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK--SGSTV---  356 (385)
T ss_pred             hhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc--cccee---
Confidence                           1122222334455555543225678999999999999999875443222222211  12223   


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                             ...+|+.++.     +|+...+|     +.|.-||..
T Consensus       357 -------RQ~sfS~dgs-----~lv~vcdd-----~~Vwrwdrv  383 (385)
T KOG1034|consen  357 -------RQTSFSRDGS-----ILVLVCDD-----GTVWRWDRV  383 (385)
T ss_pred             -------eeeeecccCc-----EEEEEeCC-----CcEEEEEee
Confidence                   3778999986     66666666     999888864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.70  E-value=1e-14  Score=112.85  Aligned_cols=183  Identities=7%  Similarity=-0.011  Sum_probs=120.1

Q ss_pred             cceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~v~iwd~   87 (240)
                      ..+.+++|+|+++.+ ++++.++.|++||..     +.+.+..+..+.. +..+.|+|+  ++.+++ +..++.+++||+
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~-----~~~~~~~~~~~~~-~~~~~~~~~--g~~l~~~~~~~~~l~~~d~  102 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLA-----TGEVIGTLPSGPD-PELFALHPN--GKILYIANEDDNLVTVIDI  102 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECC-----CCcEEEeccCCCC-ccEEEECCC--CCEEEEEcCCCCeEEEEEC
Confidence            347789999999876 567788999999998     4455555554433 567899998  886655 456899999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      ...       +.+..+.. ...+..++|+|  ++.+++++..++ .+.+||..+      .+....+.... ..      
T Consensus       103 ~~~-------~~~~~~~~-~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~d~~~------~~~~~~~~~~~-~~------  159 (300)
T TIGR03866       103 ETR-------KVLAEIPV-GVEPEGMAVSP--DGKIVVNTSETTNMAHFIDTKT------YEIVDNVLVDQ-RP------  159 (300)
T ss_pred             CCC-------eEEeEeeC-CCCcceEEECC--CCCEEEEEecCCCeEEEEeCCC------CeEEEEEEcCC-Cc------
Confidence            765       55555543 23467899999  999888888765 466778765      33332221111 11      


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEe-cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC--CCceEEEEEecCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR--SDEVYAVAWALNIG  239 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~-~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~  239 (240)
                          ..++|+|++.     +|++++ .+     +.|++||+.+........  +.....+  ......++|+||+.
T Consensus       160 ----~~~~~s~dg~-----~l~~~~~~~-----~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~dg~  219 (300)
T TIGR03866       160 ----RFAEFTADGK-----ELWVSSEIG-----GTVSVIDVATRKVIKKIT--FEIPGVHPEAVQPVGIKLTKDGK  219 (300)
T ss_pred             ----cEEEECCCCC-----EEEEEcCCC-----CEEEEEEcCcceeeeeee--ecccccccccCCccceEECCCCC
Confidence                2788999986     565554 46     999999998764322111  1110001  11235688888874

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.70  E-value=6.4e-15  Score=114.78  Aligned_cols=189  Identities=13%  Similarity=0.146  Sum_probs=135.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .+.|.+....++.+|+.++|+|++.|+.+++|+-.       ++.-+.. -..++.++.|.|.  | .++.|...|.-.+
T Consensus       364 v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~-------k~~wt~~-~~d~~~~~~fhps--g-~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDH-------KLEWTKI-IEDPAECADFHPS--G-VVAVGTATGRWFV  432 (626)
T ss_pred             EEecccceeeEEcCCChhheeeccCcceEEEccCC-------ceeEEEE-ecCceeEeeccCc--c-eEEEeeccceEEE
Confidence            56788999999999999999999999999999933       2222222 2567889999998  8 8999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      .|.++.       ..+..-.. ..++..+.|+|  +|.+||.|+.|+.|.+|-+......  .......  +..++.   
T Consensus       433 ~d~e~~-------~lv~~~~d-~~~ls~v~ysp--~G~~lAvgs~d~~iyiy~Vs~~g~~--y~r~~k~--~gs~it---  495 (626)
T KOG2106|consen  433 LDTETQ-------DLVTIHTD-NEQLSVVRYSP--DGAFLAVGSHDNHIYIYRVSANGRK--YSRVGKC--SGSPIT---  495 (626)
T ss_pred             Eecccc-------eeEEEEec-CCceEEEEEcC--CCCEEEEecCCCeEEEEEECCCCcE--EEEeeee--cCceeE---
Confidence            998774       44444444 78999999999  9999999999999999998754221  1111111  112333   


Q ss_pred             cccceeeeEEEeCCCCC-------------------------------------------------------CCCceEEE
Q 026295          165 KASCISASISWNPQKGE-------------------------------------------------------NQGSSFVL  189 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~-------------------------------------------------------~~~~~l~~  189 (240)
                             .+.|++++..                                                       ....++|+
T Consensus       496 -------hLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~  568 (626)
T KOG2106|consen  496 -------HLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLAS  568 (626)
T ss_pred             -------EeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhc
Confidence                   4444444432                                                       34456777


Q ss_pred             EecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          190 GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       190 ~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      |...     |+|++|...-.+.+. ..   ....+|+..|++|+|.-+
T Consensus       569 gdd~-----g~v~lf~yPc~s~rA-~~---he~~ghs~~vt~V~Fl~~  607 (626)
T KOG2106|consen  569 GDDF-----GKVHLFSYPCSSPRA-PS---HEYGGHSSHVTNVAFLCK  607 (626)
T ss_pred             cccC-----ceEEEEccccCCCcc-cc---eeeccccceeEEEEEeeC
Confidence            7766     999999876544322 22   233478889999999754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=8.9e-16  Score=112.58  Aligned_cols=156  Identities=16%  Similarity=0.205  Sum_probs=111.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.++|.|+.+++....+++|+.|++|++||....     .....+. ....|.++..  .  ++.|+.|+.|..|.
T Consensus        89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~-----~~~~~~d-~~kkVy~~~v--~--g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK-----VVVGTFD-QGKKVYCMDV--S--GNRLVVGTSDRKVL  158 (323)
T ss_pred             eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc-----ccccccc-cCceEEEEec--c--CCEEEEeecCceEE
Confidence            36779999999999998889999999999999999832     2333333 2446777765  2  56777888888888


Q ss_pred             EEEeeeccCCC----ccc-------------------------------------EEEEEeeecc---------ccEEeE
Q 026295           84 LWEEIVEDAQP----LQW-------------------------------------KLCKSFESTS---------TQVLDV  113 (240)
Q Consensus        84 iwd~~~~~~~~----~~~-------------------------------------~~~~~~~~~~---------~~v~~~  113 (240)
                      +||+++.+...    ..+                                     .....|+.|.         -+|.+|
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai  238 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI  238 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence            88877543210    000                                     0112233332         368899


Q ss_pred             EEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEec
Q 026295          114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN  192 (240)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~  192 (240)
                      +|+|  -...|++|+.||.|.+||+..      .+.+.++......|.          +++|+.++.     .||+|++
T Consensus       239 ~Fhp--~~~tfaTgGsDG~V~~Wd~~~------rKrl~q~~~~~~SI~----------slsfs~dG~-----~LAia~s  294 (323)
T KOG1036|consen  239 AFHP--IHGTFATGGSDGIVNIWDLFN------RKRLKQLAKYETSIS----------SLSFSMDGS-----LLAIASS  294 (323)
T ss_pred             Eecc--ccceEEecCCCceEEEccCcc------hhhhhhccCCCCceE----------EEEeccCCC-----eEEEEec
Confidence            9999  777899999999999999976      344445544444455          899999998     8999975

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.3e-16  Score=121.99  Aligned_cols=177  Identities=20%  Similarity=0.242  Sum_probs=136.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC-----CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS-----SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ++..|.++|.|++..+++..+.+|+-||+|+.|++..+.     +........+.||++.|+.+.+++.  .+.|++++.
T Consensus       339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~--~~~Llscs~  416 (577)
T KOG0642|consen  339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST--KDRLLSCSS  416 (577)
T ss_pred             EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccc--ccceeeecC
Confidence            367899999999999999999999999999999876321     1122456678899999999999998  888999999


Q ss_pred             CCeEEEEEeeeccC--C--------C-----cccEE----------------------EEEeee-------ccccEEeEE
Q 026295           79 DGSLLLWEEIVEDA--Q--------P-----LQWKL----------------------CKSFES-------TSTQVLDVQ  114 (240)
Q Consensus        79 d~~v~iwd~~~~~~--~--------~-----~~~~~----------------------~~~~~~-------~~~~v~~~~  114 (240)
                      ||++++|+......  .        .     ..+++                      +..+..       ....+..+.
T Consensus       417 DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV  496 (577)
T KOG0642|consen  417 DGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV  496 (577)
T ss_pred             CceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEE
Confidence            99999999765432  0        0     00000                      001110       113455677


Q ss_pred             EeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCC
Q 026295          115 FGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSD  194 (240)
Q Consensus       115 ~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd  194 (240)
                      ++|  +..+.+++..|+.|+++|..+      +.++.....|...+.          ++++.|++.     +|++++.| 
T Consensus       497 s~~--~~~~~~~~hed~~Ir~~dn~~------~~~l~s~~a~~~svt----------slai~~ng~-----~l~s~s~d-  552 (577)
T KOG0642|consen  497 SHP--TADITFTAHEDRSIRFFDNKT------GKILHSMVAHKDSVT----------SLAIDPNGP-----YLMSGSHD-  552 (577)
T ss_pred             ecC--CCCeeEecccCCceecccccc------cccchheeeccceec----------ceeecCCCc-----eEEeecCC-
Confidence            777  778899999999999999988      677777777777666          999999998     99999999 


Q ss_pred             CCCCCeEEEEEeecCC
Q 026295          195 TPQLNSSKVWEFDEAH  210 (240)
Q Consensus       195 ~~~~~~i~iw~~~~~~  210 (240)
                          +.+++|.+....
T Consensus       553 ----~sv~l~kld~k~  564 (577)
T KOG0642|consen  553 ----GSVRLWKLDVKT  564 (577)
T ss_pred             ----ceeehhhccchh
Confidence                999999987644

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.69  E-value=5.8e-16  Score=124.47  Aligned_cols=186  Identities=18%  Similarity=0.283  Sum_probs=129.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +++++|.+.|.|++|+.+|+++|+|+.|+.|.||+....+      +.. ..|+..|.++.|+|-  .+.+++++.. ..
T Consensus        47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG------~Lk-YSH~D~IQCMsFNP~--~h~LasCsLs-dF  116 (1081)
T KOG1538|consen   47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG------ILK-YSHNDAIQCMSFNPI--THQLASCSLS-DF  116 (1081)
T ss_pred             cccccccceEEEEEEccCCceeccCCCceeEEEecccccc------eee-eccCCeeeEeecCch--HHHhhhcchh-hc
Confidence            5688999999999999999999999999999999876321      112 258999999999999  8889888753 46


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee---cccce
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ---NAIDS  159 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~---~~~~~  159 (240)
                      -+|.....        .+...+ ....|.+.+|..  +|++++.|-.||+|.+-+-..       +....+.   +...+
T Consensus       117 glWS~~qK--------~V~K~k-ss~R~~~CsWtn--DGqylalG~~nGTIsiRNk~g-------Eek~~I~Rpgg~Nsp  178 (1081)
T KOG1538|consen  117 GLWSPEQK--------SVSKHK-SSSRIICCSWTN--DGQYLALGMFNGTISIRNKNG-------EEKVKIERPGGSNSP  178 (1081)
T ss_pred             cccChhhh--------hHHhhh-hheeEEEeeecC--CCcEEEEeccCceEEeecCCC-------CcceEEeCCCCCCCC
Confidence            68887543        222222 235677888877  999999999999999875432       1111222   12222


Q ss_pred             eeccccccceeeeEEEeCCCCC-----------------------------------------CCCceEEEEecCCCCCC
Q 026295          160 VTMFRKASCISASISWNPQKGE-----------------------------------------NQGSSFVLGFNSDTPQL  198 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~-----------------------------------------~~~~~l~~~~~dd~~~~  198 (240)
                      |.          +++|+|....                                         .++.+++.|++|     
T Consensus       179 iw----------si~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd-----  243 (1081)
T KOG1538|consen  179 IW----------SICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSD-----  243 (1081)
T ss_pred             ce----------EEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCC-----
Confidence            22          4555554433                                         344488899988     


Q ss_pred             CeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          199 NSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       199 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +.+++|....-     ...++.   ....+|+.|+-.|+++
T Consensus       244 k~L~~fTR~Gv-----rLGTvg---~~D~WIWtV~~~PNsQ  276 (1081)
T KOG1538|consen  244 KQLSLFTRDGV-----RLGTVG---EQDSWIWTVQAKPNSQ  276 (1081)
T ss_pred             CceEEEeecCe-----EEeecc---ccceeEEEEEEccCCc
Confidence            88988875431     222222   2334999999999874

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.69  E-value=3.3e-16  Score=118.43  Aligned_cols=132  Identities=16%  Similarity=0.152  Sum_probs=106.7

Q ss_pred             eEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295           50 LKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        50 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      ..+.+|+++|.++.|+|. ..+.+|+|+.|.+|.||++..+.-.-.-.+++..+.+|...|.-++|+|.. .+.|++++.
T Consensus        75 P~v~GHt~~vLDi~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-~NVLlsag~  152 (472)
T KOG0303|consen   75 PLVCGHTAPVLDIDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-PNVLLSAGS  152 (472)
T ss_pred             CCccCccccccccccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-hhhHhhccC
Confidence            345699999999999997 357899999999999999854321111225678888999999999999953 346899999


Q ss_pred             CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      |.+|.+||+.+      ++...++. |...+.          +++|+-++.     +|++.+.|     .+|||||.+++
T Consensus       153 Dn~v~iWnv~t------geali~l~-hpd~i~----------S~sfn~dGs-----~l~TtckD-----KkvRv~dpr~~  205 (472)
T KOG0303|consen  153 DNTVSIWNVGT------GEALITLD-HPDMVY----------SMSFNRDGS-----LLCTTCKD-----KKVRVIDPRRG  205 (472)
T ss_pred             CceEEEEeccC------CceeeecC-CCCeEE----------EEEeccCCc-----eeeeeccc-----ceeEEEcCCCC
Confidence            99999999998      45444554 766666          999999998     89999999     99999999886


Q ss_pred             C
Q 026295          210 H  210 (240)
Q Consensus       210 ~  210 (240)
                      .
T Consensus       206 ~  206 (472)
T KOG0303|consen  206 T  206 (472)
T ss_pred             c
Confidence            5

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.68  E-value=1.6e-15  Score=122.80  Aligned_cols=170  Identities=14%  Similarity=0.219  Sum_probs=136.7

Q ss_pred             cchhcccccceEEEEECCCC--CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295            2 DKAVATLDKGTTSSSWNYCG--QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      .+++-+|...|+++.|...|  ..+++++.|+.|.+--..+...+......+-......++++...|.  ..++++++.|
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~--~k~v~t~cQD  617 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPT--SKLVVTVCQD  617 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCC--cceEEEEecc
Confidence            45678899999999999887  7899999998875443333221111111111112356899999998  9999999999


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeee---ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFES---TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ..|+||+++.+       +..+.|++   +.+..-.+...|  .|.|+++.+.|.++.++|+-+      ++++.++.+|
T Consensus       618 rnirif~i~sg-------Kq~k~FKgs~~~eG~lIKv~lDP--SgiY~atScsdktl~~~Df~s------gEcvA~m~GH  682 (1080)
T KOG1408|consen  618 RNIRIFDIESG-------KQVKSFKGSRDHEGDLIKVILDP--SGIYLATSCSDKTLCFVDFVS------GECVAQMTGH  682 (1080)
T ss_pred             cceEEEecccc-------ceeeeecccccCCCceEEEEECC--CccEEEEeecCCceEEEEecc------chhhhhhcCc
Confidence            99999999888       88888875   556677788888  999999999999999999988      7999999999


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ...|.          .+.|.++..     .|++.+.|     |.|.||.+..
T Consensus       683 sE~VT----------G~kF~nDCk-----HlISvsgD-----gCIFvW~lp~  714 (1080)
T KOG1408|consen  683 SEAVT----------GVKFLNDCK-----HLISVSGD-----GCIFVWKLPL  714 (1080)
T ss_pred             chhee----------eeeecccch-----hheeecCC-----ceEEEEECch
Confidence            98888          899999998     78888888     9999999853

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.68  E-value=9.8e-15  Score=105.45  Aligned_cols=152  Identities=20%  Similarity=0.356  Sum_probs=106.4

Q ss_pred             EEEEECCCCCEEEEEeC----------CCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEE--ecC
Q 026295           13 TSSSWNYCGQRLATGST----------DGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACI--CSD   79 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~--~~d   79 (240)
                      ..+.|+++|++|+.-..          -+...||.++...    .....+. ...++|.+++|+|+  |+.|+..  ..+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----~~~~~i~l~~~~~I~~~~WsP~--g~~favi~g~~~   82 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----IPVESIELKKEGPIHDVAWSPN--GNEFAVIYGSMP   82 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----CccceeeccCCCceEEEEECcC--CCEEEEEEccCC
Confidence            35889999987665433          1345666664322    1222332 23467999999999  8877654  456


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC---CCcEEEEEecCcccccceeEEeeeecc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS---DGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ..|.+||++.        +.+..+.  ...+..+.|+|  +|++|++++.   .|.|.+||.++      .+.+......
T Consensus        83 ~~v~lyd~~~--------~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~------~~~i~~~~~~  144 (194)
T PF08662_consen   83 AKVTLYDVKG--------KKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRK------KKKISTFEHS  144 (194)
T ss_pred             cccEEEcCcc--------cEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCC------CEEeeccccC
Confidence            7999999963        6666665  35678899999  9999999874   36799999986      4555443221


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecC-----CCCCCCeEEEEEeecC
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS-----DTPQLNSSKVWEFDEA  209 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d-----d~~~~~~i~iw~~~~~  209 (240)
                        .+.          .++|+|++.     +|+++...     |    +.++||++...
T Consensus       145 --~~t----------~~~WsPdGr-----~~~ta~t~~r~~~d----ng~~Iw~~~G~  181 (194)
T PF08662_consen  145 --DAT----------DVEWSPDGR-----YLATATTSPRLRVD----NGFKIWSFQGR  181 (194)
T ss_pred             --cEE----------EEEEcCCCC-----EEEEEEeccceecc----ccEEEEEecCe
Confidence              122          899999998     88888752     2    89999998653

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.67  E-value=1.7e-15  Score=118.70  Aligned_cols=168  Identities=17%  Similarity=0.239  Sum_probs=129.6

Q ss_pred             cceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCC-----------Cc-E-----------EEEeEeeecCccEEEEEEc
Q 026295           10 KGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSS-----------SS-F-----------TCNLKTKVHAGAILKVVWV   65 (240)
Q Consensus        10 ~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~-----------~~-~-----------~~~~~~~~h~~~v~~~~~~   65 (240)
                      ..|+|+.|-|-+ ..++.+-.+|.+.+||......           +. .           .++..+..-++.|+..+|+
T Consensus       220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS  299 (636)
T KOG2394|consen  220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS  299 (636)
T ss_pred             cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence            579999999844 5677778889999997642210           00 0           1122223335678999999


Q ss_pred             CCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc
Q 026295           66 PPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK  145 (240)
Q Consensus        66 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~  145 (240)
                      |+  |.+||+.+.||.+||||+...       +.+..++..-+...|++|+|  ||+|+++|+.|--|.||.+..     
T Consensus       300 ~D--G~~LA~VSqDGfLRvF~fdt~-------eLlg~mkSYFGGLLCvcWSP--DGKyIvtGGEDDLVtVwSf~e-----  363 (636)
T KOG2394|consen  300 PD--GKYLATVSQDGFLRIFDFDTQ-------ELLGVMKSYFGGLLCVCWSP--DGKYIVTGGEDDLVTVWSFEE-----  363 (636)
T ss_pred             CC--CceEEEEecCceEEEeeccHH-------HHHHHHHhhccceEEEEEcC--CccEEEecCCcceEEEEEecc-----
Confidence            99  999999999999999999876       66777777778899999999  999999999999999999987     


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCC-------------------------------------------C
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE-------------------------------------------N  182 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~-------------------------------------------~  182 (240)
                       ..++..-++|..+|.          .|+|+|....                                           .
T Consensus       364 -rRVVARGqGHkSWVs----------~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~  432 (636)
T KOG2394|consen  364 -RRVVARGQGHKSWVS----------VVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINS  432 (636)
T ss_pred             -ceEEEecccccccee----------eEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccc
Confidence             677777778888887          7777752211                                           1


Q ss_pred             CCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          183 QGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       183 ~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      ..+.|.+.+.|     ..+.+||+...
T Consensus       433 v~YRfGSVGqD-----TqlcLWDlteD  454 (636)
T KOG2394|consen  433 VTYRFGSVGQD-----TQLCLWDLTED  454 (636)
T ss_pred             eEEEeeccccc-----ceEEEEecchh
Confidence            34577888888     99999999764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=3.4e-15  Score=108.94  Aligned_cols=194  Identities=16%  Similarity=0.214  Sum_probs=137.2

Q ss_pred             cccccceEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-----eecCccEEEEEEcCCCCCCEEEE
Q 026295            6 ATLDKGTTSSSWNYCG-----QRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-----KVHAGAILKVVWVPPEFGDAVAC   75 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~-----~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s   75 (240)
                      ..|.-+++.+-|.|+.     ++|||.+.  .+|+|.+..... ...+...+     ..+.+++++..|+.- ..+++.+
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~-~~~~~~~L~~~kns~~~aPlTSFDWne~-dp~~igt  168 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEES-RVELQSVLNNNKNSEFCAPLTSFDWNEV-DPNLIGT  168 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCC-ceehhhhhccCcccccCCcccccccccC-CcceeEe
Confidence            3577789999999976     36777654  899999874211 22222222     245678999999764 3688999


Q ss_pred             EecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee-
Q 026295           76 ICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ-  154 (240)
Q Consensus        76 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-  154 (240)
                      ++-|.+..|||++.+    .......++-.|...|..++|.. ..-..|++++.||.|++||++.      .+....+- 
T Consensus       169 SSiDTTCTiWdie~~----~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~------leHSTIIYE  237 (364)
T KOG0290|consen  169 SSIDTTCTIWDIETG----VSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRS------LEHSTIIYE  237 (364)
T ss_pred             ecccCeEEEEEEeec----cccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecc------cccceEEec
Confidence            999999999999875    11245666778999999999986 1235799999999999999996      22111111 


Q ss_pred             cc--cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295          155 NA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       155 ~~--~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v  232 (240)
                      ..  ..+.-          .++|++....    ++|+-.+|.    ..|.|-|++...   ..+.+|.   +|.+.|+.+
T Consensus       238 ~p~~~~pLl----------RLswnkqDpn----ymATf~~dS----~~V~iLDiR~P~---tpva~L~---~H~a~VNgI  293 (364)
T KOG0290|consen  238 DPSPSTPLL----------RLSWNKQDPN----YMATFAMDS----NKVVILDIRVPC---TPVARLR---NHQASVNGI  293 (364)
T ss_pred             CCCCCCcce----------eeccCcCCch----HHhhhhcCC----ceEEEEEecCCC---cceehhh---cCcccccce
Confidence            11  12222          6888887753    888887775    899999998754   2344444   688899999


Q ss_pred             EEecCC
Q 026295          233 AWALNI  238 (240)
Q Consensus       233 ~~sp~~  238 (240)
                      +|.|-.
T Consensus       294 aWaPhS  299 (364)
T KOG0290|consen  294 AWAPHS  299 (364)
T ss_pred             EecCCC
Confidence            999965

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.67  E-value=1.3e-15  Score=109.73  Aligned_cols=208  Identities=14%  Similarity=0.115  Sum_probs=128.6

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      |++|.+.|+++.|..+++ |.+|..-|.|++|++.     +.+.+..++ .+...|+.+.-.|.   ..+.+-+.|+.+.
T Consensus        10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lq-----t~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L~   80 (323)
T KOG0322|consen   10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQ-----TERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLLI   80 (323)
T ss_pred             eccccchheehhhccchh-hhcccccceEEEEEee-----cCccchhhhhhccceeeceeecCC---cchhhcCCCceEE
Confidence            568899999999988775 8899999999999998     445566666 56677888887674   5577888999999


Q ss_pred             EEEeeecc----------------------CCCcccEEEE--------------------Eee----eccccEEeEEEee
Q 026295           84 LWEEIVED----------------------AQPLQWKLCK--------------------SFE----STSTQVLDVQFGV  117 (240)
Q Consensus        84 iwd~~~~~----------------------~~~~~~~~~~--------------------~~~----~~~~~v~~~~~~~  117 (240)
                      +|++....                      +...+|....                    ...    ...+.+.+..+..
T Consensus        81 lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~  160 (323)
T KOG0322|consen   81 LWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDH  160 (323)
T ss_pred             EEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccc
Confidence            99965410                      0000000000                    000    0123344444321


Q ss_pred             cCCC--cEEEEEeCCCcEEEEEecCcccc----cceeEEeeeecccceeec--------cccc-----------------
Q 026295          118 SSTS--LKLVAAYSDGHVKVYELLDPLIL----KNWQLQAEFQNAIDSVTM--------FRKA-----------------  166 (240)
Q Consensus       118 ~~~~--~~l~~~~~dg~v~iw~~~~~~~~----~~~~~~~~~~~~~~~v~~--------~~~~-----------------  166 (240)
                       ..+  .++++|..+|.|.+||+.+....    ..++.+.....|..++..        .|..                 
T Consensus       161 -~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  161 -ACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             -cccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence             122  35778889999999999873110    011111111222222210        0000                 


Q ss_pred             -----------cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          167 -----------SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       167 -----------~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                                 -+.++.+...|++.     +||+++.|     +.||||..++.....       ....|++.|++|+|+
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~K-----IlATAGWD-----~RiRVyswrtl~pLA-------VLkyHsagvn~vAfs  302 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGK-----ILATAGWD-----HRIRVYSWRTLNPLA-------VLKYHSAGVNAVAFS  302 (323)
T ss_pred             cccccceEEecCCCccceEEccCCc-----EEeecccC-----CcEEEEEeccCCchh-------hhhhhhcceeEEEeC
Confidence                       11334555555555     99999999     999999998855332       223588899999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      ||.+
T Consensus       303 pd~~  306 (323)
T KOG0322|consen  303 PDCE  306 (323)
T ss_pred             CCCc
Confidence            9964

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.67  E-value=1.6e-15  Score=111.97  Aligned_cols=161  Identities=16%  Similarity=0.195  Sum_probs=107.6

Q ss_pred             EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC-------------------Cccc----------EE
Q 026295           49 NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-------------------PLQW----------KL   99 (240)
Q Consensus        49 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-------------------~~~~----------~~   99 (240)
                      +..+++|...|++++|+.+  |.+|++++.|+.|++|+++.-...                   .+..          ..
T Consensus        79 ~~~LKgH~~~vt~~~FsSd--GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~  156 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSD--GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK  156 (420)
T ss_pred             hhhhhccCCceeeeEEcCC--CceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence            4567899999999999999  999999999999999996531100                   0000          00


Q ss_pred             EEEee-----------------------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295          100 CKSFE-----------------------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus       100 ~~~~~-----------------------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +..+.                       .|.-.+-.+-..  .++.++++++.|..|.+|+++       +++...+...
T Consensus       157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-------Gq~L~~idtn  227 (420)
T KOG2096|consen  157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-------GQLLQSIDTN  227 (420)
T ss_pred             EEEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-------Cceeeeeccc
Confidence            11110                       122223333333  377899999999999999998       3555555443


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-CCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE-AHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      .....          ..+.+|++.     ++++++..     .-|++|..-- ....++.+...-...||.+.|..++||
T Consensus       228 q~~n~----------~aavSP~GR-----Fia~~gFT-----pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs  287 (420)
T KOG2096|consen  228 QSSNY----------DAAVSPDGR-----FIAVSGFT-----PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS  287 (420)
T ss_pred             ccccc----------ceeeCCCCc-----EEEEecCC-----CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC
Confidence            33222          567899987     88888777     7899999732 222333333333345899999999999


Q ss_pred             cCCCC
Q 026295          236 LNIGR  240 (240)
Q Consensus       236 p~~~~  240 (240)
                      |+..|
T Consensus       288 n~S~r  292 (420)
T KOG2096|consen  288 NSSTR  292 (420)
T ss_pred             CCcce
Confidence            99865

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=4.7e-14  Score=106.01  Aligned_cols=157  Identities=14%  Similarity=0.217  Sum_probs=122.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee---cCccEEEEEEcCCCCCCEEEEE--ecCCeEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV---HAGAILKVVWVPPEFGDAVACI--CSDGSLLL   84 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~--~~d~~v~i   84 (240)
                      ..|.+++++  .++|+++-++ .|.|||+.     ..+++.++..   +...+.+++.++.  +.+++--  ...|.|.+
T Consensus        88 t~IL~VrmN--r~RLvV~Lee-~IyIydI~-----~MklLhTI~t~~~n~~gl~AlS~n~~--n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   88 TSILAVRMN--RKRLVVCLEE-SIYIYDIK-----DMKLLHTIETTPPNPKGLCALSPNNA--NCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             CceEEEEEc--cceEEEEEcc-cEEEEecc-----cceeehhhhccCCCccceEeeccCCC--CceEEecCCCCCceEEE
Confidence            356666665  4677777775 49999999     6677777763   3444666666555  7787753  33689999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcE-EEEEecCcccccceeEEeeeecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV-KVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||..+.       ++...+..|++.+-+++|++  +|.+||+++..|+| ||+.+.+      ++...+|.....     
T Consensus       158 ~d~~nl-------~~v~~I~aH~~~lAalafs~--~G~llATASeKGTVIRVf~v~~------G~kl~eFRRG~~-----  217 (391)
T KOG2110|consen  158 FDTINL-------QPVNTINAHKGPLAALAFSP--DGTLLATASEKGTVIRVFSVPE------GQKLYEFRRGTY-----  217 (391)
T ss_pred             EEcccc-------eeeeEEEecCCceeEEEECC--CCCEEEEeccCceEEEEEEcCC------ccEeeeeeCCce-----
Confidence            999877       88999999999999999999  99999999999985 8999977      677777765433     


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                         .+.+.+++|+|+..     +|++.+..     ++|+||.++..
T Consensus       218 ---~~~IySL~Fs~ds~-----~L~~sS~T-----eTVHiFKL~~~  250 (391)
T KOG2110|consen  218 ---PVSIYSLSFSPDSQ-----FLAASSNT-----ETVHIFKLEKV  250 (391)
T ss_pred             ---eeEEEEEEECCCCC-----eEEEecCC-----CeEEEEEeccc
Confidence               23456999999997     78888877     99999999754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.64  E-value=9.4e-14  Score=111.52  Aligned_cols=185  Identities=21%  Similarity=0.345  Sum_probs=137.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~   81 (240)
                      .+..|...|..++|+|+++.+++++. |+.+++|+..     ....+..+.+|...|.++.|+|.  +. ++++++.|+.
T Consensus       150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~d~~  222 (466)
T COG2319         150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-----TGKPLSTLAGHTDPVSSLAFSPD--GGLLIASGSSDGT  222 (466)
T ss_pred             EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-----CCceEEeeccCCCceEEEEEcCC--cceEEEEecCCCc
Confidence            46678899999999999999999886 9999999998     44567777789999999999987  76 5666689999


Q ss_pred             EEEEEeeeccCCCcccEEEE-EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           82 LLLWEEIVEDAQPLQWKLCK-SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      |++||...+       .... .+..|.... ...|+|  ++.++++++.|+.+++|+.+....     ....+..|...+
T Consensus       223 i~~wd~~~~-------~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~v  287 (466)
T COG2319         223 IRLWDLSTG-------KLLRSTLSGHSDSV-VSSFSP--DGSLLASGSSDGTIRLWDLRSSSS-----LLRTLSGHSSSV  287 (466)
T ss_pred             EEEEECCCC-------cEEeeecCCCCcce-eEeECC--CCCEEEEecCCCcEEEeeecCCCc-----EEEEEecCCccE
Confidence            999987643       4555 566666664 338888  777888999999999999986322     122223344444


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      .          ++.|.|...     .+++++.|     +.+.+|+...........     ...|...|..+.|.
T Consensus       288 ~----------~~~~~~~~~-----~~~~~~~d-----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  337 (466)
T COG2319         288 L----------SVAFSPDGK-----LLASGSSD-----GTVRLWDLETGKLLSSLT-----LKGHEGPVSSLSFS  337 (466)
T ss_pred             E----------EEEECCCCC-----EEEEeeCC-----CcEEEEEcCCCceEEEee-----ecccCCceEEEEEC
Confidence            4          789999655     67778777     889999776544222221     12466678999883

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.64  E-value=1.2e-15  Score=119.66  Aligned_cols=119  Identities=21%  Similarity=0.259  Sum_probs=103.2

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ++.|+.++|+|||++||+.+.||.+||||..     +.+++..++..-+...+++|+|+  |+++++|+.|-.|.||.+.
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-----t~eLlg~mkSYFGGLLCvcWSPD--GKyIvtGGEDDLVtVwSf~  362 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFD-----TQELLGVMKSYFGGLLCVCWSPD--GKYIVTGGEDDLVTVWSFE  362 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeecc-----HHHHHHHHHhhccceEEEEEcCC--ccEEEecCCcceEEEEEec
Confidence            4578999999999999999999999999998     66677777777788999999999  9999999999999999998


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeec---------------------------------CCC-------------c
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVS---------------------------------STS-------------L  122 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------------------------~~~-------------~  122 (240)
                      ..       +.+..-++|..+|..|+|+|-                                 .++             .
T Consensus       363 er-------RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~Y  435 (636)
T KOG2394|consen  363 ER-------RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTY  435 (636)
T ss_pred             cc-------eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEE
Confidence            77       888888999999999999831                                 011             2


Q ss_pred             EEEEEeCCCcEEEEEecCc
Q 026295          123 KLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus       123 ~l~~~~~dg~v~iw~~~~~  141 (240)
                      .|.+++.|-++.+||+..+
T Consensus       436 RfGSVGqDTqlcLWDlteD  454 (636)
T KOG2394|consen  436 RFGSVGQDTQLCLWDLTED  454 (636)
T ss_pred             EeecccccceEEEEecchh
Confidence            4778889999999999753

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.64  E-value=8.4e-15  Score=111.16  Aligned_cols=152  Identities=17%  Similarity=0.288  Sum_probs=119.1

Q ss_pred             CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCC--cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcE
Q 026295           56 AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQP--LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV  133 (240)
Q Consensus        56 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  133 (240)
                      ..+|.++.|.+. ....+++|+.|..|++|.+....+.+  ...+-+..+..|...|+.+.|+|  +|.+|++|+.+|.|
T Consensus        13 ~~pv~s~dfq~n-~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p--~gelLASg~D~g~v   89 (434)
T KOG1009|consen   13 HEPVYSVDFQKN-SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP--DGELLASGGDGGEV   89 (434)
T ss_pred             CCceEEEEeccC-cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC--CcCeeeecCCCceE
Confidence            357999999777 23389999999999999998765543  35566777788999999999999  99999999999999


Q ss_pred             EEEEec--------Cccc--ccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295          134 KVYELL--------DPLI--LKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       134 ~iw~~~--------~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                      .+|...        +..+  ...|.....+..|...+-          .++|+|++.     ++++++.|     +.+++
T Consensus        90 ~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy----------dL~Ws~d~~-----~l~s~s~d-----ns~~l  149 (434)
T KOG1009|consen   90 FLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY----------DLAWSPDSN-----FLVSGSVD-----NSVRL  149 (434)
T ss_pred             EEEEecCcCCccccchhhhCccceEEEEEecccccchh----------hhhccCCCc-----eeeeeecc-----ceEEE
Confidence            999876        1111  123555556666666555          899999998     89999999     99999


Q ss_pred             EEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          204 WEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       204 w~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ||+..+.    +...   ..+|...|.-++|.|-
T Consensus       150 ~Dv~~G~----l~~~---~~dh~~yvqgvawDpl  176 (434)
T KOG1009|consen  150 WDVHAGQ----LLAI---LDDHEHYVQGVAWDPL  176 (434)
T ss_pred             EEeccce----eEee---ccccccccceeecchh
Confidence            9999865    3232   3367779999999884

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=3.6e-15  Score=119.35  Aligned_cols=166  Identities=15%  Similarity=0.268  Sum_probs=129.6

Q ss_pred             ECCCCCEEEE--EeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCC
Q 026295           17 WNYCGQRLAT--GSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQP   94 (240)
Q Consensus        17 ~s~~~~~l~~--~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   94 (240)
                      |..+..++|.  .+..|.|-||++..++.-.-..+..+. ....|+++.|.|- +.+.|+.++.||.|++|.+..+....
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e  664 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPE  664 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCc
Confidence            3444555555  355689999999876421111222332 3567999999986 36789999999999999998776655


Q ss_pred             cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEE
Q 026295           95 LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASIS  174 (240)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~  174 (240)
                      ....+...+..|...|+++.|+|-. ...|++++.|-+|++||++.      ......+.+|...|-          .++
T Consensus       665 ~~~tPe~~lt~h~eKI~slRfHPLA-advLa~asyd~Ti~lWDl~~------~~~~~~l~gHtdqIf----------~~A  727 (1012)
T KOG1445|consen  665 NEMTPEKILTIHGEKITSLRFHPLA-ADVLAVASYDSTIELWDLAN------AKLYSRLVGHTDQIF----------GIA  727 (1012)
T ss_pred             ccCCcceeeecccceEEEEEecchh-hhHhhhhhccceeeeeehhh------hhhhheeccCcCcee----------EEE
Confidence            5667778888899999999999842 34589999999999999997      566778889988887          999


Q ss_pred             EeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          175 WNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       175 ~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                      |+|++.     .+|+-+-|     |+|++|+.+....
T Consensus       728 WSpdGr-----~~AtVcKD-----g~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  728 WSPDGR-----RIATVCKD-----GTLRVYEPRSREQ  754 (1012)
T ss_pred             ECCCCc-----ceeeeecC-----ceEEEeCCCCCCC
Confidence            999998     89999999     9999999877543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.63  E-value=1.6e-14  Score=117.91  Aligned_cols=198  Identities=18%  Similarity=0.243  Sum_probs=130.5

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEE-EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            9 DKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFT-CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         9 ~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      ...|+|+.|+| +..++|.|..+|.|.+||+......... .......|..++..+.|..+..+.-|++++.||.|+.|+
T Consensus       242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~  321 (555)
T KOG1587|consen  242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD  321 (555)
T ss_pred             CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence            45899999999 5678999999999999999865321011 122234689999999998773345589999999999998


Q ss_pred             eeeccC-----------------------------------------CC---------------cccEEEEEeeeccccE
Q 026295           87 EIVEDA-----------------------------------------QP---------------LQWKLCKSFESTSTQV  110 (240)
Q Consensus        87 ~~~~~~-----------------------------------------~~---------------~~~~~~~~~~~~~~~v  110 (240)
                      ++....                                         .+               ..++....+..|.+.|
T Consensus       322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v  401 (555)
T KOG1587|consen  322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV  401 (555)
T ss_pred             ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence            653211                                         00               0011122334466888


Q ss_pred             EeEEEeecCCCcE-EEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEE
Q 026295          111 LDVQFGVSSTSLK-LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL  189 (240)
Q Consensus       111 ~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~  189 (240)
                      .++.++|  =+.. +++++ |-+|+||.....     ..++..+......+.          +++|+|....    +|++
T Consensus       402 ~~v~~nP--F~~k~fls~g-DW~vriWs~~~~-----~~Pl~~~~~~~~~v~----------~vaWSptrpa----vF~~  459 (555)
T KOG1587|consen  402 YAVSRNP--FYPKNFLSVG-DWTVRIWSEDVI-----ASPLLSLDSSPDYVT----------DVAWSPTRPA----VFAT  459 (555)
T ss_pred             EeeecCC--Cccceeeeec-cceeEeccccCC-----CCcchhhhhccceee----------eeEEcCcCce----EEEE
Confidence            9999988  4433 44444 889999987621     222333333333344          8999999863    7888


Q ss_pred             EecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          190 GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       190 ~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +..+     |.|.|||+............+     +....+.+.|++++
T Consensus       460 ~d~~-----G~l~iWDLl~~~~~Pv~s~~~-----~~~~l~~~~~s~~g  498 (555)
T KOG1587|consen  460 VDGD-----GNLDIWDLLQDDEEPVLSQKV-----CSPALTRVRWSPNG  498 (555)
T ss_pred             EcCC-----CceehhhhhccccCCcccccc-----cccccceeecCCCC
Confidence            8888     999999997765443332221     23356777777755

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.63  E-value=5.3e-15  Score=106.57  Aligned_cols=164  Identities=15%  Similarity=0.209  Sum_probs=118.9

Q ss_pred             cceEEEEECC-CC--CEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295           10 KGTTSSSWNY-CG--QRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus        10 ~~v~~~~~s~-~~--~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +.++|..+.. ++  -+|++|-++|.+.+||+.....     ..++.......|..+|.++.|.+.  -..=++++.+..
T Consensus       151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~--~~rGisgga~dk  228 (323)
T KOG0322|consen  151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS--CDRGISGGADDK  228 (323)
T ss_pred             CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--hcCCcCCCcccc
Confidence            4677777544 23  2677888999999999984210     012333444579999999999766  344457777778


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      +..|.+....+   ..+...........|..+.+-|  +++++|+++.|+.|+||+.++      ..+...++-|...+ 
T Consensus       229 l~~~Sl~~s~g---slq~~~e~~lknpGv~gvrIRp--D~KIlATAGWD~RiRVyswrt------l~pLAVLkyHsagv-  296 (323)
T KOG0322|consen  229 LVMYSLNHSTG---SLQIRKEITLKNPGVSGVRIRP--DGKILATAGWDHRIRVYSWRT------LNPLAVLKYHSAGV-  296 (323)
T ss_pred             ceeeeeccccC---cccccceEEecCCCccceEEcc--CCcEEeecccCCcEEEEEecc------CCchhhhhhhhcce-
Confidence            88998865422   1122222333446788889988  999999999999999999998      56666666665544 


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                               ++++|+|+..     ++|.|+.|     ..|.+|++
T Consensus       297 ---------n~vAfspd~~-----lmAaaskD-----~rISLWkL  322 (323)
T KOG0322|consen  297 ---------NAVAFSPDCE-----LMAAASKD-----ARISLWKL  322 (323)
T ss_pred             ---------eEEEeCCCCc-----hhhhccCC-----ceEEeeec
Confidence                     4999999977     89999999     99999986

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.62  E-value=7.5e-15  Score=117.20  Aligned_cols=118  Identities=17%  Similarity=0.249  Sum_probs=93.6

Q ss_pred             EEEECCC---CCEEEEEeCCCcEEEEeCCCCCCC-cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           14 SSSWNYC---GQRLATGSTDGTLSIFDSPDPSSS-SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        14 ~~~~s~~---~~~l~~~~~d~~i~iw~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      +..|++.   ...|+.+.+||.|.++|.....-. .-..+.....|...|.++.|.|.  ...|++++.|.++++||+..
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapg--e~~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPG--ESLLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCC--ceeEEEccCCceeeeeeecc
Confidence            3566652   358999999999999998643100 01123445579999999999997  78899999999999999987


Q ss_pred             ccCCCcccEEEEE--eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           90 EDAQPLQWKLCKS--FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        90 ~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      .       .+...  +.+|...|.+++|.|. +...|++|+.||.|.|||++..
T Consensus       132 s-------~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n  177 (720)
T KOG0321|consen  132 S-------RLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCN  177 (720)
T ss_pred             c-------eeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEecc
Confidence            6       55555  7899999999999985 5567999999999999999853

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.61  E-value=4.2e-15  Score=116.72  Aligned_cols=163  Identities=20%  Similarity=0.303  Sum_probs=122.4

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      ..|+.++.||.+.|.+-..      +.-..+..|.+.+.+-.|+|+  |.-|++++.||.|++|.-..        ....
T Consensus        76 d~~~i~s~DGkf~il~k~~------rVE~sv~AH~~A~~~gRW~~d--GtgLlt~GEDG~iKiWSrsG--------MLRS  139 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILNKSA------RVERSISAHAAAISSGRWSPD--GAGLLTAGEDGVIKIWSRSG--------MLRS  139 (737)
T ss_pred             ceEEEEcCCceEEEecccc------hhhhhhhhhhhhhhhcccCCC--CceeeeecCCceEEEEeccc--------hHHH
Confidence            4788899999999887653      344567789999999999999  99999999999999999653        3444


Q ss_pred             EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCC
Q 026295          102 SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE  181 (240)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~  181 (240)
                      ++......|.|++|.|  +...++.+.. +.+.|=.+..      -..+-..+.|.+-+-          ++.|+|... 
T Consensus       140 tl~Q~~~~v~c~~W~p--~S~~vl~c~g-~h~~IKpL~~------n~k~i~WkAHDGiiL----------~~~W~~~s~-  199 (737)
T KOG1524|consen  140 TVVQNEESIRCARWAP--NSNSIVFCQG-GHISIKPLAA------NSKIIRWRAHDGLVL----------SLSWSTQSN-  199 (737)
T ss_pred             HHhhcCceeEEEEECC--CCCceEEecC-CeEEEeeccc------ccceeEEeccCcEEE----------EeecCcccc-
Confidence            4555678999999999  6665555443 3455544443      122334567776666          899999988 


Q ss_pred             CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                          ++++|+.|     -..+|||..... .+       ....|..+|++|+|+|+
T Consensus       200 ----lI~sgGED-----~kfKvWD~~G~~-Lf-------~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  200 ----IIASGGED-----FRFKIWDAQGAN-LF-------TSAAEEYAITSVAFNPE  238 (737)
T ss_pred             ----ceeecCCc-----eeEEeecccCcc-cc-------cCChhccceeeeeeccc
Confidence                89999999     999999976532 11       12246679999999998

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.61  E-value=1.2e-14  Score=107.60  Aligned_cols=153  Identities=17%  Similarity=0.199  Sum_probs=115.7

Q ss_pred             cccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEE
Q 026295            8 LDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iw   85 (240)
                      ..+-|.|++|+|.. +.+|.|+.-.++-||.-.     ...++..+.+|.+.|+.++|.++  |+.|.+|.. |-.|.+|
T Consensus       206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~-----~~~pl~llggh~gGvThL~~~ed--Gn~lfsGaRk~dkIl~W  278 (406)
T KOG2919|consen  206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD-----GRRPLQLLGGHGGGVTHLQWCED--GNKLFSGARKDDKILCW  278 (406)
T ss_pred             ccceeeeeeccCCCCcceeeecccceeeeEecC-----CCCceeeecccCCCeeeEEeccC--cCeecccccCCCeEEEE
Confidence            35678899999955 699999999999999877     44677888899999999999999  999988875 6689999


Q ss_pred             EeeeccCCCcccEEEEEeeeccc-cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTST-QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      |++.-.      .++..+..|.. .-..|-|.-.+.+++|++|+.||.|++||+++..+     ....+..+..      
T Consensus       279 DiR~~~------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn-----~~sv~~~~sd------  341 (406)
T KOG2919|consen  279 DIRYSR------DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN-----EVSVTGNYSD------  341 (406)
T ss_pred             eehhcc------chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC-----cccccccccc------
Confidence            998642      45555555544 33455665444999999999999999999987422     2222223322      


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                          .+|.|+++|.-.     ++|+++..
T Consensus       342 ----~vNgvslnP~mp-----ilatssGq  361 (406)
T KOG2919|consen  342 ----TVNGVSLNPIMP-----ILATSSGQ  361 (406)
T ss_pred             ----cccceecCcccc-----eeeeccCc
Confidence                345899999976     88888763

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=2.9e-13  Score=101.85  Aligned_cols=117  Identities=20%  Similarity=0.272  Sum_probs=100.4

Q ss_pred             cccceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-EEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGS--TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-LLL   84 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-v~i   84 (240)
                      +...+.+++++..+.+||--+  ..|.|.|||..     +.+.+..+..|++++.+++|+++  |.++|+++..|+ ||+
T Consensus       128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~-----nl~~v~~I~aH~~~lAalafs~~--G~llATASeKGTVIRV  200 (391)
T KOG2110|consen  128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI-----NLQPVNTINAHKGPLAALAFSPD--GTLLATASEKGTVIRV  200 (391)
T ss_pred             CccceEeeccCCCCceEEecCCCCCceEEEEEcc-----cceeeeEEEecCCceeEEEECCC--CCEEEEeccCceEEEE
Confidence            455677777777788988754  34889999998     77899999999999999999999  999999999996 789


Q ss_pred             EEeeeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           85 WEEIVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +.+.++       +.+.+|+..  ...|.+++|+|  ++.+|++.+..++|++|.+.+
T Consensus       201 f~v~~G-------~kl~eFRRG~~~~~IySL~Fs~--ds~~L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  201 FSVPEG-------QKLYEFRRGTYPVSIYSLSFSP--DSQFLAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEcCCc-------cEeeeeeCCceeeEEEEEEECC--CCCeEEEecCCCeEEEEEecc
Confidence            999777       888888753  35678999999  999999999999999999875

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=3.4e-13  Score=96.39  Aligned_cols=190  Identities=12%  Similarity=0.137  Sum_probs=120.9

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC-----cEEEEeEeee---cCccEEEEEEcCCCCCCEEEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS-----SFTCNLKTKV---HAGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~-----~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      .+.|+++|..++|.  ..+|++|+. |.|+=|.-......     .++...-.+.   .--.|+++...|.  .+-++.+
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~--enSi~~A  132 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS--ENSILFA  132 (325)
T ss_pred             ccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC--CCcEEEe
Confidence            47899999999998  456777764 99998876532110     1111111110   1135788888887  5545555


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +.|+.+..||++.+       +..+++++|+..+.++.--. .+++ +++|+.||++++||+++      .+.++.+...
T Consensus       133 gGD~~~y~~dlE~G-------~i~r~~rGHtDYvH~vv~R~-~~~q-ilsG~EDGtvRvWd~kt------~k~v~~ie~y  197 (325)
T KOG0649|consen  133 GGDGVIYQVDLEDG-------RIQREYRGHTDYVHSVVGRN-ANGQ-ILSGAEDGTVRVWDTKT------QKHVSMIEPY  197 (325)
T ss_pred             cCCeEEEEEEecCC-------EEEEEEcCCcceeeeeeecc-cCcc-eeecCCCccEEEEeccc------cceeEEeccc
Confidence            67999999999988       99999999999999998732 2555 99999999999999998      4555544422


Q ss_pred             c--ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          157 I--DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       157 ~--~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .  ...+|....  -+.+++  -+..     .|++|+.      ..+.+|+++..+..  .+..++   +   .|..+.|
T Consensus       198 k~~~~lRp~~g~--wigala--~~ed-----WlvCGgG------p~lslwhLrsse~t--~vfpip---a---~v~~v~F  254 (325)
T KOG0649|consen  198 KNPNLLRPDWGK--WIGALA--VNED-----WLVCGGG------PKLSLWHLRSSEST--CVFPIP---A---RVHLVDF  254 (325)
T ss_pred             cChhhcCcccCc--eeEEEe--ccCc-----eEEecCC------CceeEEeccCCCce--EEEecc---c---ceeEeee
Confidence            1  111211110  011232  2222     6777775      68999999876533  222222   2   5666666


Q ss_pred             ecC
Q 026295          235 ALN  237 (240)
Q Consensus       235 sp~  237 (240)
                      -.|
T Consensus       255 ~~d  257 (325)
T KOG0649|consen  255 VDD  257 (325)
T ss_pred             ecc
Confidence            554

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.57  E-value=1.4e-12  Score=104.62  Aligned_cols=180  Identities=21%  Similarity=0.346  Sum_probs=135.9

Q ss_pred             ceEEEEE-CCCCC-EEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEEE
Q 026295           11 GTTSSSW-NYCGQ-RLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLWE   86 (240)
Q Consensus        11 ~v~~~~~-s~~~~-~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd   86 (240)
                      .+..+.+ ++++. +++..+. |+.+++|+...    .......+..|...|..++|+|+  +..+++++. |+.+++|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~  184 (466)
T COG2319         111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST----PGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWD  184 (466)
T ss_pred             ceeeEEEECCCcceEEeccCCCCccEEEEEecC----CCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEE
Confidence            5667777 78887 5555455 89999999983    14677788899999999999999  888888875 99999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEe-eeecccceeeccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDSVTMFR  164 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~  164 (240)
                      ....       ..+..+..|...|.+++|+|  ++. .+++++.|+.|++||...      ..... .+..+.....   
T Consensus       185 ~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~------~~~~~~~~~~~~~~~~---  246 (466)
T COG2319         185 LRTG-------KPLSTLAGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLST------GKLLRSTLSGHSDSVV---  246 (466)
T ss_pred             cCCC-------ceEEeeccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCC------CcEEeeecCCCCccee---
Confidence            9764       67778888999999999998  776 555569999999997763      34333 3444422100   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                             . .|+|++.     ++++++.+     +.+++|+......   ....+   .+|...|.++.|+|++
T Consensus       247 -------~-~~~~~~~-----~~~~~~~d-----~~~~~~~~~~~~~---~~~~~---~~~~~~v~~~~~~~~~  296 (466)
T COG2319         247 -------S-SFSPDGS-----LLASGSSD-----GTIRLWDLRSSSS---LLRTL---SGHSSSVLSVAFSPDG  296 (466)
T ss_pred             -------E-eECCCCC-----EEEEecCC-----CcEEEeeecCCCc---EEEEE---ecCCccEEEEEECCCC
Confidence                   1 6888885     78888888     9999999987654   12222   3577899999999954

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.57  E-value=3.8e-13  Score=97.21  Aligned_cols=111  Identities=18%  Similarity=0.309  Sum_probs=87.6

Q ss_pred             ccceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---CeEE
Q 026295            9 DKGTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---GSLL   83 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~   83 (240)
                      .+.|.+++|+|+|+.||+.  ..+..|.+||+.      .+.+..+.  ...++.+.|+|.  |++++.++.+   |.|.
T Consensus        59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~------~~~i~~~~--~~~~n~i~wsP~--G~~l~~~g~~n~~G~l~  128 (194)
T PF08662_consen   59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK------GKKIFSFG--TQPRNTISWSPD--GRFLVLAGFGNLNGDLE  128 (194)
T ss_pred             CCceEEEEECcCCCEEEEEEccCCcccEEEcCc------ccEeEeec--CCCceEEEECCC--CCEEEEEEccCCCcEEE
Confidence            3469999999999987655  456799999996      24455553  567889999999  9999988753   6799


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC------CCcEEEEEecC
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS------DGHVKVYELLD  140 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~iw~~~~  140 (240)
                      +||.+..       +.+..+..  ..+..++|+|  +|++|++++.      |+.++||+...
T Consensus       129 ~wd~~~~-------~~i~~~~~--~~~t~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  129 FWDVRKK-------KKISTFEH--SDATDVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQG  180 (194)
T ss_pred             EEECCCC-------EEeecccc--CcEEEEEEcC--CCCEEEEEEeccceeccccEEEEEecC
Confidence            9999865       66666653  3578999999  9999998874      68899999863

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.57  E-value=4.5e-15  Score=114.51  Aligned_cols=178  Identities=12%  Similarity=0.121  Sum_probs=135.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..|..+.|-|..-+|++++..|.++.-|+.     +++++..+..-.+.+..++-+|-  .-.+-.|...|+|.+|....
T Consensus       210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-----~GklVa~~~t~~G~~~vm~qNP~--NaVih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  210 IRVARLEFLPYHFLLVAASEAGFLKYQDVS-----TGKLVASIRTGAGRTDVMKQNPY--NAVIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             CchhhhcccchhheeeecccCCceEEEeec-----hhhhhHHHHccCCccchhhcCCc--cceEEEcCCCceEEecCCCC
Confidence            357788899999999999999999999998     78888888877888999999888  78888999999999999987


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      .       .++..+..|.++|.+|++.+  +|.|+++.+.|..|+|||++.      ....+.+.. .....        
T Consensus       283 k-------ePLvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~------~~ql~t~~t-p~~a~--------  338 (545)
T KOG1272|consen  283 K-------EPLVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLRN------FYQLHTYRT-PHPAS--------  338 (545)
T ss_pred             c-------chHHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeecc------ccccceeec-CCCcc--------
Confidence            7       78888889999999999988  999999999999999999997      332323222 11122        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC-C-CCcceeEeeecCCCCCCceEEEEEec
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA-H-NRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~-~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                        .++++..+      +||.+..      ..|.||.-.-. . ....+.   -.|. ...+|.+|.|.|
T Consensus       339 --~ls~Sqkg------lLA~~~G------~~v~iw~d~~~~s~~~~~pY---m~H~-~~~~V~~l~FcP  389 (545)
T KOG1272|consen  339 --NLSLSQKG------LLALSYG------DHVQIWKDALKGSGHGETPY---MNHR-CGGPVEDLRFCP  389 (545)
T ss_pred             --cccccccc------ceeeecC------CeeeeehhhhcCCCCCCcch---hhhc-cCcccccceecc
Confidence              67888777      5666655      68999953221 1 111111   0111 333788888887

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.6e-14  Score=114.64  Aligned_cols=168  Identities=13%  Similarity=0.083  Sum_probs=129.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ++.-.+.|.++.|+|...+|++++. ..|+|||+.     ...++..+..-...|..++.+|.  |..|+.++.|+.++.
T Consensus       562 F~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~-----kqelvKkL~tg~kwiS~msihp~--GDnli~gs~d~k~~W  633 (733)
T KOG0650|consen  562 FRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS-----KQELVKKLLTGSKWISSMSIHPN--GDNLILGSYDKKMCW  633 (733)
T ss_pred             hhhcCCceeEEEecCCCceEEEEec-cceEEEehh-----HHHHHHHHhcCCeeeeeeeecCC--CCeEEEecCCCeeEE
Confidence            3444578999999999999999887 699999998     44455555544566889999998  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccc---eeEEeeeecccceee
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKN---WQLQAEFQNAIDSVT  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~---~~~~~~~~~~~~~v~  161 (240)
                      +|+.-..      ++.++++.|...+++|+|++  .-.++++|+.||++.|+.-.-...+.+   ..++..+.+|... .
T Consensus       634 fDldlss------kPyk~lr~H~~avr~Va~H~--ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~-~  704 (733)
T KOG0650|consen  634 FDLDLSS------KPYKTLRLHEKAVRSVAFHK--RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT-N  704 (733)
T ss_pred             EEcccCc------chhHHhhhhhhhhhhhhhcc--ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee-c
Confidence            9997543      67888889999999999988  888899999999999987554332222   2334444555332 0


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                           ...+.++.|+|...     .|.+++.|     |+|++|
T Consensus       705 -----~~gVLd~~wHP~qp-----WLfsAGAd-----~tirlf  732 (733)
T KOG0650|consen  705 -----DLGVLDTIWHPRQP-----WLFSAGAD-----GTIRLF  732 (733)
T ss_pred             -----ccceEeecccCCCc-----eEEecCCC-----ceEEee
Confidence                 01233678999987     89999998     999998

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=9.9e-14  Score=103.34  Aligned_cols=175  Identities=17%  Similarity=0.242  Sum_probs=119.2

Q ss_pred             chhcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEec-
Q 026295            3 KAVATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICS-   78 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~-   78 (240)
                      +.+..++..++.++|..  ....+.+|+.||+|++||++...   ......+..|. .+..++.-+-.  ++++++|.. 
T Consensus        64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~---e~a~~~~~~~~~~~f~~ld~nck--~~ii~~GtE~  138 (376)
T KOG1188|consen   64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQA---ESARISWTQQSGTPFICLDLNCK--KNIIACGTEL  138 (376)
T ss_pred             heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecch---hhhheeccCCCCCcceEeeccCc--CCeEEecccc
Confidence            34667888899999977  45789999999999999998431   12223333444 34445555434  677777643 


Q ss_pred             ---CCeEEEEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           79 ---DGSLLLWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        79 ---d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                         |-.|.+||.+...      ++++.+ ..|...|+++.|+|+ +.++|++|+.||-|.+||++.+.+.  -.+...+ 
T Consensus       139 ~~s~A~v~lwDvR~~q------q~l~~~~eSH~DDVT~lrFHP~-~pnlLlSGSvDGLvnlfD~~~d~Ee--DaL~~vi-  208 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSEQ------QLLRQLNESHNDDVTQLRFHPS-DPNLLLSGSVDGLVNLFDTKKDNEE--DALLHVI-  208 (376)
T ss_pred             ccCceEEEEEEecccc------chhhhhhhhccCcceeEEecCC-CCCeEEeecccceEEeeecCCCcch--hhHHHhh-
Confidence               5689999998753      324444 468999999999996 5678999999999999999875221  1122222 


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                      .+...|          ..+.|.-.+-.    .|.+-+..     ....+|++..+..
T Consensus       209 N~~sSI----------~~igw~~~~yk----rI~clTH~-----Etf~~~ele~~~~  246 (376)
T KOG1188|consen  209 NHGSSI----------HLIGWLSKKYK----RIMCLTHM-----ETFAIYELEDGSE  246 (376)
T ss_pred             ccccee----------eeeeeecCCcc----eEEEEEcc-----CceeEEEccCCCh
Confidence            222223          37889887731    46666666     8999999977653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=6.4e-14  Score=100.07  Aligned_cols=172  Identities=16%  Similarity=0.223  Sum_probs=121.6

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC----CCcE-EEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS----SSSF-TCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ....|..-+++|.+++|++|..+|.|-++.+..-.    .+.+ ..+...++|+++|+.++|. +   .+|++++ ||.|
T Consensus         9 ~~~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d---~~Lls~g-dG~V   83 (325)
T KOG0649|consen    9 AYNTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-D---DFLLSGG-DGLV   83 (325)
T ss_pred             HHHHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-h---hheeecc-CceE
Confidence            33567778999999999999999999999885321    1112 2344557999999999994 3   4566655 6999


Q ss_pred             EEEEeeeccC---CCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           83 LLWEEIVEDA---QPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        83 ~iwd~~~~~~---~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +-|.-+....   -...|+....+.   ..-..|+++-..|  ..+-++.++.|+.++-||+++      +....++.+|
T Consensus        84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~~AgGD~~~y~~dlE~------G~i~r~~rGH  155 (325)
T KOG0649|consen   84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSILFAGGDGVIYQVDLED------GRIQREYRGH  155 (325)
T ss_pred             EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEEEecCCeEEEEEEecC------CEEEEEEcCC
Confidence            9886543211   012222221111   1235678888888  444456666899999999998      7888999999


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                      ...++          ++.-.....     -+++|+.|     |++||||..+.+..
T Consensus       156 tDYvH----------~vv~R~~~~-----qilsG~ED-----GtvRvWd~kt~k~v  191 (325)
T KOG0649|consen  156 TDYVH----------SVVGRNANG-----QILSGAED-----GTVRVWDTKTQKHV  191 (325)
T ss_pred             cceee----------eeeecccCc-----ceeecCCC-----ccEEEEecccccee
Confidence            99988          777633333     58999999     99999999887643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.55  E-value=3.7e-12  Score=100.23  Aligned_cols=204  Identities=10%  Similarity=-0.008  Sum_probs=123.5

Q ss_pred             cceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~   87 (240)
                      +....++|+|++++|++++. ++.|.+|++...+. ..+.+..+.+ ......++++|+  ++++++++ .++.|.+||+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~-~~~~~~~~~~p~--g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-PVAPIQIIEG-LEGCHSANIDPD--NRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-CCCceeeccC-CCcccEeEeCCC--CCEEEEeeCCCCEEEEEEE
Confidence            35668999999998888764 78999999964221 1122333322 234677889998  88775544 5689999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      .........-....... .......+.|+|  +++++++++. +++|.+|++....  ...+.++.+........    .
T Consensus       156 ~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~--~~~~~~~~~~~~p~~~~----~  226 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTV-EGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPH--GEIECVQTLDMMPADFS----D  226 (330)
T ss_pred             CCCCcccccCCCceecC-CCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCC--CCEEEEEEEecCCCcCC----C
Confidence            65210000000001111 124467899999  9998888776 8999999997421  12334444432211100    0


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ......+.++|++.     +|+++...+    +.|.+|+++...........+...    ...+.++|+||+.
T Consensus       227 ~~~~~~i~~~pdg~-----~lyv~~~~~----~~I~v~~i~~~~~~~~~~~~~~~~----~~p~~~~~~~dg~  286 (330)
T PRK11028        227 TRWAADIHITPDGR-----HLYACDRTA----SLISVFSVSEDGSVLSFEGHQPTE----TQPRGFNIDHSGK  286 (330)
T ss_pred             CccceeEEECCCCC-----EEEEecCCC----CeEEEEEEeCCCCeEEEeEEEecc----ccCCceEECCCCC
Confidence            11122688999987     777776533    899999997654443343333221    2456789999874

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=4.9e-13  Score=108.61  Aligned_cols=181  Identities=14%  Similarity=0.076  Sum_probs=115.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~   80 (240)
                      +..|...+...+|+|+|++|+..+.+   ..|++||+...   ..+.+..+.+|   ...++|+|+  |+.|+.+. .++
T Consensus       199 lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---~~~~l~~~~g~---~~~~~wSPD--G~~La~~~~~~g  270 (429)
T PRK01742        199 VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---ARKVVASFRGH---NGAPAFSPD--GSRLAFASSKDG  270 (429)
T ss_pred             eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---ceEEEecCCCc---cCceeECCC--CCEEEEEEecCC
Confidence            45566789999999999999988754   36999999732   22344444443   346899999  98887754 688


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .+.||.+....      .....+..+...+....|+|  +|..|+..+ .+|...||++.....    . ...+ .+.. 
T Consensus       271 ~~~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~~~----~-~~~l-~~~~-  335 (429)
T PRK01742        271 VLNIYVMGANG------GTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSASGG----G-ASLV-GGRG-  335 (429)
T ss_pred             cEEEEEEECCC------CCeEeeccCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECCCC----C-eEEe-cCCC-
Confidence            77777554221      22333444556678899999  998766555 578889998764211    1 1111 1111 


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       .          ...|+|++.     .|+..+.+     + +.+||+.++...  .   +..  .+  ....++|+||+.
T Consensus       336 -~----------~~~~SpDG~-----~ia~~~~~-----~-i~~~Dl~~g~~~--~---lt~--~~--~~~~~~~sPdG~  384 (429)
T PRK01742        336 -Y----------SAQISADGK-----TLVMINGD-----N-VVKQDLTSGSTE--V---LSS--TF--LDESPSISPNGI  384 (429)
T ss_pred             -C----------CccCCCCCC-----EEEEEcCC-----C-EEEEECCCCCeE--E---ecC--CC--CCCCceECCCCC
Confidence             1          567999987     77777664     4 555888765422  1   111  11  235678999874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.6e-12  Score=97.84  Aligned_cols=191  Identities=14%  Similarity=0.241  Sum_probs=124.3

Q ss_pred             cceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcE---------EEEeEeeecCccEEEEEEcCCCCCCEEEEEec-
Q 026295           10 KGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSF---------TCNLKTKVHAGAILKVVWVPPEFGDAVACICS-   78 (240)
Q Consensus        10 ~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-   78 (240)
                      ..|+|++|-|. ++-|+.|.. +-|.||..........         ..+..-.+| .+|++++|+++  |..+++++- 
T Consensus       141 rnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d--gt~l~tAS~g  216 (445)
T KOG2139|consen  141 RNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED--GTILVTASFG  216 (445)
T ss_pred             cceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC--CCEEeecccC
Confidence            47999999995 467888887 4688998763211000         112222355 68999999999  998888765 


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      |..|+|||...+       ..+.-....-..+.-+.|||  ++.+|++++-|+..++|+....     |....-.. ...
T Consensus       217 sssi~iWdpdtg-------~~~pL~~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~-----wt~erw~l-gsg  281 (445)
T KOG2139|consen  217 SSSIMIWDPDTG-------QKIPLIPKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQS-----WTKERWIL-GSG  281 (445)
T ss_pred             cceEEEEcCCCC-------CcccccccCCCceeeEEEcC--CCCEEEEecccceeeeehhccc-----ceecceec-cCC
Confidence            568999999887       33333333447788999999  9999999999999999976542     43332221 122


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC-----------cceeEeee------c
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR-----------WLPVAELA------L  221 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~-----------~~~~~~~~------~  221 (240)
                      .+.          .-+|+|.+.     .|+.+..      +.-++|.+.-..+.           ..+...|.      +
T Consensus       282 rvq----------tacWspcGs-----fLLf~~s------gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag  340 (445)
T KOG2139|consen  282 RVQ----------TACWSPCGS-----FLLFACS------GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAG  340 (445)
T ss_pred             cee----------eeeecCCCC-----EEEEEEc------CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcC
Confidence            344          788999997     5555554      56677766432111           11111111      1


Q ss_pred             CCCCCCceEEEEEecCCCC
Q 026295          222 PEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       222 ~~~h~~~v~~v~~sp~~~~  240 (240)
                      .+-..+++.+++|.|.|-|
T Consensus       341 ~~l~cgeaq~lawDpsGey  359 (445)
T KOG2139|consen  341 QRLCCGEAQCLAWDPSGEY  359 (445)
T ss_pred             cccccCccceeeECCCCCE
Confidence            1113457899999998854

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.53  E-value=1.6e-11  Score=96.57  Aligned_cols=201  Identities=10%  Similarity=0.053  Sum_probs=121.0

Q ss_pred             ccceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEEE
Q 026295            9 DKGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLWE   86 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd   86 (240)
                      .+....++++|++++|++++ .++.|.+|++...+  ....+.... ..+....+.++|+  ++++++++. ++.|.+|+
T Consensus        34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--~l~~~~~~~-~~~~p~~i~~~~~--g~~l~v~~~~~~~v~v~~  108 (330)
T PRK11028         34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--ALTFAAESP-LPGSPTHISTDHQ--GRFLFSASYNANCVSVSP  108 (330)
T ss_pred             CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--ceEEeeeec-CCCCceEEEECCC--CCEEEEEEcCCCeEEEEE
Confidence            35677899999999887664 57889999996322  333333332 2345678999999  988877664 78999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      +.....   ....+..+.. ......++++|  +++++++++ .++.|.+||+.+...+.. ..........      + 
T Consensus       109 ~~~~g~---~~~~~~~~~~-~~~~~~~~~~p--~g~~l~v~~~~~~~v~v~d~~~~g~l~~-~~~~~~~~~~------g-  174 (330)
T PRK11028        109 LDKDGI---PVAPIQIIEG-LEGCHSANIDP--DNRTLWVPCLKEDRIRLFTLSDDGHLVA-QEPAEVTTVE------G-  174 (330)
T ss_pred             ECCCCC---CCCceeeccC-CCcccEeEeCC--CCCEEEEeeCCCCEEEEEEECCCCcccc-cCCCceecCC------C-
Confidence            863210   0122222222 23467788998  888775554 569999999975211100 0000011000      0 


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC---CCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE---DRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~  239 (240)
                        .....+.|+|++.     +++++...+    +.|.+|+++...........+....   .+......+.|+||+.
T Consensus       175 --~~p~~~~~~pdg~-----~lyv~~~~~----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        175 --AGPRHMVFHPNQQ-----YAYCVNELN----SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             --CCCceEEECCCCC-----EEEEEecCC----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence              1123789999987     777777633    9999999985332333333332211   1222345688999874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=9e-14  Score=108.03  Aligned_cols=206  Identities=14%  Similarity=0.170  Sum_probs=144.0

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-eecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .++|..|.+.|..+.|+..|..|++|+.|..|.+||-.     .......+ .+|...|...+|.|.....-+++++.||
T Consensus       135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~-----~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg  209 (559)
T KOG1334|consen  135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWV-----SGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG  209 (559)
T ss_pred             hhcccCCCCccceeeecccCceeeccCccceEEeehhh-----ccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence            46799999999999999999999999999999999987     33444444 4798899999998875456789999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|++=.+...    ........+..|.+.|..++.-|. ....|.+++.|+.|.-+|++...+.....+.   ..+..  
T Consensus       210 qvr~s~i~~t----~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---~~~~~--  279 (559)
T KOG1334|consen  210 QVRVSEILET----GYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---EADEK--  279 (559)
T ss_pred             ceeeeeeccc----cceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeee---ccCCc--
Confidence            9998776543    111223445568889999999884 3345899999999999999875443322211   11111  


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC--------cceeEeeecCCCCCCceEEE
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR--------WLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~--------~~~~~~~~~~~~h~~~v~~v  232 (240)
                           ....-++++-+|....    .+++|++|     ..+++||.+.-...        +.+...+.   ...-.|+++
T Consensus       280 -----~~v~L~~Ia~~P~nt~----~faVgG~d-----qf~RvYD~R~~~~e~~n~~~~~f~p~hl~~---d~~v~ITgl  342 (559)
T KOG1334|consen  280 -----ERVGLYTIAVDPRNTN----EFAVGGSD-----QFARVYDQRRIDKEENNGVLDKFCPHHLVE---DDPVNITGL  342 (559)
T ss_pred             -----cceeeeeEecCCCCcc----ccccCChh-----hhhhhhcccchhhccccchhhhcCCccccc---cCcccceeE
Confidence                 0011127778887753    89999999     99999998754322        11111111   122368999


Q ss_pred             EEecCCC
Q 026295          233 AWALNIG  239 (240)
Q Consensus       233 ~~sp~~~  239 (240)
                      +|+-+++
T Consensus       343 ~Ysh~~s  349 (559)
T KOG1334|consen  343 VYSHDGS  349 (559)
T ss_pred             EecCCcc
Confidence            9997664

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.51  E-value=2.6e-12  Score=109.87  Aligned_cols=203  Identities=17%  Similarity=0.121  Sum_probs=134.6

Q ss_pred             cchhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            2 DKAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ...|.+|...|..++.++.. .+|++|+.||+|++|+..+...  ++.+...++..-..++..+...+.  ++.+|.++.
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~--~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGN--GDQFAVSTK 1118 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccC--CCeEEEEcC
Confidence            34578899999999988755 9999999999999999975321  234444555545678999999888  999999999


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ||.|++.++.............+....  ....|..-+|........++.+...+.|..||++.....  |....  ...
T Consensus      1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~--w~lk~--~~~ 1194 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA--WRLKN--QLR 1194 (1431)
T ss_pred             CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH--Hhhhc--Ccc
Confidence            999999998752111000111111111  222233334432212236888899999999999974333  22222  223


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC--CCcceeEeeecCCCCCCceEEEEE
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH--NRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~--~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .+.++          +++-+|.+.     .+++|.+.     |.+-+||++-..  ..|..        ++..+++.|..
T Consensus      1195 hG~vT----------Si~idp~~~-----WlviGts~-----G~l~lWDLRF~~~i~sw~~--------P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1195 HGLVT----------SIVIDPWCN-----WLVIGTSR-----GQLVLWDLRFRVPILSWEH--------PARAPIRHVWL 1246 (1431)
T ss_pred             cccee----------EEEecCCce-----EEEEecCC-----ceEEEEEeecCceeecccC--------cccCCcceEEe
Confidence            34444          888999988     89999998     999999997542  22222        34457777777


Q ss_pred             ecCC
Q 026295          235 ALNI  238 (240)
Q Consensus       235 sp~~  238 (240)
                      +|--
T Consensus      1247 ~~~~ 1250 (1431)
T KOG1240|consen 1247 CPTY 1250 (1431)
T ss_pred             eccC
Confidence            6643

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=1e-12  Score=106.73  Aligned_cols=178  Identities=20%  Similarity=0.214  Sum_probs=113.9

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~   87 (240)
                      +....++|+|+|++|+.++ .+|.+.||.++..   ... ...+..+...+....|+|+  |+.++..+ .++...||++
T Consensus       248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~---~~~-~~~lt~~~~~~~~~~wSpD--G~~i~f~s~~~g~~~I~~~  321 (429)
T PRK01742        248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGAN---GGT-PSQLTSGAGNNTEPSWSPD--GQSILFTSDRSGSPQVYRM  321 (429)
T ss_pred             CccCceeECCCCCEEEEEEecCCcEEEEEEECC---CCC-eEeeccCCCCcCCEEECCC--CCEEEEEECCCCCceEEEE
Confidence            3445789999999888765 6887777654321   112 2334456667889999999  98766544 5788899988


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      .....     . ...+ .+..  ....|+|  +|.+|+..+.++ +.+||+.+.      +.. .+.... ...      
T Consensus       322 ~~~~~-----~-~~~l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g------~~~-~lt~~~-~~~------  375 (429)
T PRK01742        322 SASGG-----G-ASLV-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSG------STE-VLSSTF-LDE------  375 (429)
T ss_pred             ECCCC-----C-eEEe-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCC------CeE-EecCCC-CCC------
Confidence            64321     1 1112 2222  4578999  999888887765 556898762      221 111110 111      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                          .+.|+|++.     +|+.++.+     +.+.+|.+......  ....+.   .|.+.+...+|||-.
T Consensus       376 ----~~~~sPdG~-----~i~~~s~~-----g~~~~l~~~~~~G~--~~~~l~---~~~g~~~~p~wsp~~  427 (429)
T PRK01742        376 ----SPSISPNGI-----MIIYSSTQ-----GLGKVLQLVSADGR--FKARLP---GSDGQVKFPAWSPYL  427 (429)
T ss_pred             ----CceECCCCC-----EEEEEEcC-----CCceEEEEEECCCC--ceEEcc---CCCCCCCCcccCCCC
Confidence                678999997     88888887     88888887542221  233333   355689999999954

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=1.9e-12  Score=109.31  Aligned_cols=187  Identities=11%  Similarity=0.141  Sum_probs=122.2

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295           15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ   93 (240)
Q Consensus        15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   93 (240)
                      +.|.....+|.+++.-..|+|||...     .+....+. +.+..|+++.-+.. .|++++.|..||.|++||.+.....
T Consensus      1171 ~dWqQ~~G~Ll~tGd~r~IRIWDa~~-----E~~~~diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGDVRSIRIWDAHK-----EQVVADIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred             eehhhhCCeEEecCCeeEEEEEeccc-----ceeEeecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCcc
Confidence            56766555666666678999999983     34444443 34456777765544 2799999999999999999875332


Q ss_pred             CcccEEEEEeeecccc--EEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           94 PLQWKLCKSFESTSTQ--VLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        94 ~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                          ..+...+.|...  |..+.+.+  .|. .|++|+.||.|++||++.+....    ...+..+..       .+...
T Consensus      1245 ----s~v~~~R~h~~~~~Iv~~slq~--~G~~elvSgs~~G~I~~~DlR~~~~e~----~~~iv~~~~-------yGs~l 1307 (1387)
T KOG1517|consen 1245 ----SLVCVYREHNDVEPIVHLSLQR--QGLGELVSGSQDGDIQLLDLRMSSKET----FLTIVAHWE-------YGSAL 1307 (1387)
T ss_pred             ----ccceeecccCCcccceeEEeec--CCCcceeeeccCCeEEEEecccCcccc----cceeeeccc-------cCccc
Confidence                456667777766  88999977  444 49999999999999999742111    111112110       00011


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC-CCCCCceEEEEEecC
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP-EDRSDEVYAVAWALN  237 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~sp~  237 (240)
                      +++.-++...     ++|+|+.      +.|+||++...+..-....  +.+ ......+.+++|+|-
T Consensus      1308 Tal~VH~hap-----iiAsGs~------q~ikIy~~~G~~l~~~k~n--~~F~~q~~gs~scL~FHP~ 1362 (1387)
T KOG1517|consen 1308 TALTVHEHAP-----IIASGSA------QLIKIYSLSGEQLNIIKYN--PGFMGQRIGSVSCLAFHPH 1362 (1387)
T ss_pred             eeeeeccCCC-----eeeecCc------ceEEEEecChhhhcccccC--cccccCcCCCcceeeecch
Confidence            2777788776     8888887      7999999876542211111  111 113336799999984

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=4.9e-12  Score=102.71  Aligned_cols=188  Identities=13%  Similarity=0.097  Sum_probs=114.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~   80 (240)
                      +..+.+.+.+.+|+|+|+.|+..+.+   ..|.+||+...   ....+   ....+.+....|+|+  |+.++ +.+.++
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---~~~~l---~~~~g~~~~~~~SPD--G~~la~~~~~~g  262 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---RRRVV---ANFKGSNSAPAWSPD--GRTLAVALSRDG  262 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---CEEEe---ecCCCCccceEECCC--CCEEEEEEccCC
Confidence            44566788899999999999887643   35999999733   22222   223345668999999  98776 567788


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccce
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ...||.+....      .....+..+........|+|  +|+.|+..+. +|...+|.+....    .. ...+......
T Consensus       263 ~~~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~----g~-~~~lt~~g~~  329 (427)
T PRK02889        263 NSQIYTVNADG------SGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASG----GA-AQRVTFTGSY  329 (427)
T ss_pred             CceEEEEECCC------CCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCC----Cc-eEEEecCCCC
Confidence            87888765322      12333433444556788999  9998776654 4677788764311    11 1111111111


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ..          ...|+|++.     +|+..+.+++.  ..|.+||+.++...     .+..    .......+|+||+.
T Consensus       330 ~~----------~~~~SpDG~-----~Ia~~s~~~g~--~~I~v~d~~~g~~~-----~lt~----~~~~~~p~~spdg~  383 (427)
T PRK02889        330 NT----------SPRISPDGK-----LLAYISRVGGA--FKLYVQDLATGQVT-----ALTD----TTRDESPSFAPNGR  383 (427)
T ss_pred             cC----------ceEECCCCC-----EEEEEEccCCc--EEEEEEECCCCCeE-----EccC----CCCccCceECCCCC
Confidence            11          578999987     67766654100  26889998765422     1111    11346789999974

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=2.6e-12  Score=97.87  Aligned_cols=122  Identities=10%  Similarity=0.070  Sum_probs=93.7

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      |...|.|++|+...++|.+|..+++|.+.|+.     +-+.+..+.  ...+.|+.+..+|.  .+.|++.+.++.|.+|
T Consensus       104 H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiE-----t~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~  176 (609)
T KOG4227|consen  104 HRSNIFSLEFDLENRFLYSGERWGTVIKHDIE-----TKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFI  176 (609)
T ss_pred             cccceEEEEEccCCeeEecCCCcceeEeeecc-----cceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEE
Confidence            56789999999999999999999999999998     334444433  23358999999998  8999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      |.+...+.    -.+...........++.|+|. ...+|++.+..+-+.+||.+.+
T Consensus       177 D~Rd~~~~----~~~~~~AN~~~~F~t~~F~P~-~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  177 DNRDRQNP----ISLVLPANSGKNFYTAEFHPE-TPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             eccCCCCC----CceeeecCCCccceeeeecCC-CceeEEeccccCCCCceeeccc
Confidence            99865311    111222234466788899985 4456888888888999999864

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=2.8e-13  Score=106.92  Aligned_cols=133  Identities=17%  Similarity=0.276  Sum_probs=105.7

Q ss_pred             EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEE
Q 026295           49 NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        49 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                      -..+.+|++.|+++.|+.+  |.+|++|+.|-.+.|||.-..       +++..+. +|...|.++.|-|..+..++++|
T Consensus        43 E~eL~GH~GCVN~LeWn~d--G~lL~SGSDD~r~ivWd~~~~-------KllhsI~TgHtaNIFsvKFvP~tnnriv~sg  113 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNAD--GELLASGSDDTRLIVWDPFEY-------KLLHSISTGHTANIFSVKFVPYTNNRIVLSG  113 (758)
T ss_pred             hhhhccccceecceeecCC--CCEEeecCCcceEEeecchhc-------ceeeeeecccccceeEEeeeccCCCeEEEec
Confidence            3567799999999999999  999999999999999998755       6777765 79999999999998888999999


Q ss_pred             eCCCcEEEEEecCccc----ccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295          128 YSDGHVKVYELLDPLI----LKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       128 ~~dg~v~iw~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                      ..|..|+++|+.....    ....+....+..|...+.          .++-.|.++.    .+.+++.|     |+|+-
T Consensus       114 AgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK----------ria~~p~~Ph----tfwsasED-----GtirQ  174 (758)
T KOG1310|consen  114 AGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK----------RIATAPNGPH----TFWSASED-----GTIRQ  174 (758)
T ss_pred             cCcceEEEEecccccccccccCccchhhhhhhhhhhhh----------heecCCCCCc----eEEEecCC-----cceee
Confidence            9999999999975211    111222233344554444          6777787743    89999999     99999


Q ss_pred             EEeecC
Q 026295          204 WEFDEA  209 (240)
Q Consensus       204 w~~~~~  209 (240)
                      ||++..
T Consensus       175 yDiREp  180 (758)
T KOG1310|consen  175 YDIREP  180 (758)
T ss_pred             ecccCC
Confidence            999874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=4.9e-12  Score=104.63  Aligned_cols=188  Identities=12%  Similarity=0.192  Sum_probs=133.5

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeEEEEEeeeccC
Q 026295           14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~   92 (240)
                      ...|++|+++++.+.. ..|.||...     ++.++..+.+|..++..+.+.|.... .++.+++.||.|++||...+.-
T Consensus        21 ~avfSnD~k~l~~~~~-~~V~VyS~~-----Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTG-NFVKVYSTA-----TGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL   94 (792)
T ss_pred             ccccccCCcEEEEeeC-CEEEEEecc-----hHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE
Confidence            3478999998888876 589999998     88999999999999999999887322 4677999999999999432100


Q ss_pred             ---------------------------------------------------------------------------CCccc
Q 026295           93 ---------------------------------------------------------------------------QPLQW   97 (240)
Q Consensus        93 ---------------------------------------------------------------------------~~~~~   97 (240)
                                                                                                 +..++
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence                                                                                       00000


Q ss_pred             EEEE------Ee---------------eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           98 KLCK------SF---------------ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        98 ~~~~------~~---------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      ..+.      .+               ..|.-.+++.+++|  ++++++++..||+|.+|.--.....  -.-...+.=|
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp--n~~~~Aa~d~dGrI~vw~d~~~~~~--~~t~t~lHWH  250 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP--NERYLAAGDSDGRILVWRDFGSSDD--SETCTLLHWH  250 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc--ccceEEEeccCCcEEEEeccccccc--cccceEEEec
Confidence            0000      00               01334467899999  9999999999999999974431110  1112223333


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      ...          |++++|++++.     +|++|+..     +.+-+|.+.++++++.+        .-+++|..+.+||
T Consensus       251 ~~~----------V~~L~fS~~G~-----~LlSGG~E-----~VLv~Wq~~T~~kqfLP--------RLgs~I~~i~vS~  302 (792)
T KOG1963|consen  251 HDE----------VNSLSFSSDGA-----YLLSGGRE-----GVLVLWQLETGKKQFLP--------RLGSPILHIVVSP  302 (792)
T ss_pred             ccc----------cceeEEecCCc-----eEeecccc-----eEEEEEeecCCCccccc--------ccCCeeEEEEEcC
Confidence            333          34999999998     99999999     99999999998744322        2344999999999


Q ss_pred             CCC
Q 026295          237 NIG  239 (240)
Q Consensus       237 ~~~  239 (240)
                      |+.
T Consensus       303 ds~  305 (792)
T KOG1963|consen  303 DSD  305 (792)
T ss_pred             CCC
Confidence            974

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.9e-11  Score=98.62  Aligned_cols=184  Identities=11%  Similarity=0.080  Sum_probs=113.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~   80 (240)
                      +..|...+.+.+|+|+|+.|+..+.   +..|.+||+...     +. ..+..+.+.+....|+|+  |+.|+ +.+.++
T Consensus       197 lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-----~~-~~l~~~~g~~~~~~~SPD--G~~la~~~~~~g  268 (435)
T PRK05137        197 LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-----QR-ELVGNFPGMTFAPRFSPD--GRKVVMSLSQGG  268 (435)
T ss_pred             EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-----cE-EEeecCCCcccCcEECCC--CCEEEEEEecCC
Confidence            5567778999999999999888764   467999999732     22 223345567778999999  88665 555566


Q ss_pred             e--EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecCcccccceeEEeeeec
Q 026295           81 S--LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 ~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      .  |.+||+..+       . ...+..+........|+|  +|..++..+. +|  .|.++|+..      .+ ...+..
T Consensus       269 ~~~Iy~~d~~~~-------~-~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g------~~-~~~lt~  331 (435)
T PRK05137        269 NTDIYTMDLRSG-------T-TTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADG------SN-PRRISF  331 (435)
T ss_pred             CceEEEEECCCC-------c-eEEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCC------CC-eEEeec
Confidence            5  555666543       2 333444445566789999  9998877663 34  466666553      11 122222


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      ......          ...|+|++.     .|+....+.+.  ..|.+|++..+..     ..+.    ....+..++|+
T Consensus       332 ~~~~~~----------~~~~SpdG~-----~ia~~~~~~~~--~~i~~~d~~~~~~-----~~lt----~~~~~~~p~~s  385 (435)
T PRK05137        332 GGGRYS----------TPVWSPRGD-----LIAFTKQGGGQ--FSIGVMKPDGSGE-----RILT----SGFLVEGPTWA  385 (435)
T ss_pred             CCCccc----------CeEECCCCC-----EEEEEEcCCCc--eEEEEEECCCCce-----Eecc----CCCCCCCCeEC
Confidence            111122          678999997     67665543200  2566677644321     1111    11146778999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      ||+.
T Consensus       386 pDG~  389 (435)
T PRK05137        386 PNGR  389 (435)
T ss_pred             CCCC
Confidence            9974

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=6.3e-12  Score=104.00  Aligned_cols=180  Identities=13%  Similarity=0.185  Sum_probs=128.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|.-.++|.++||.++++|+|..||.|.+|.-..... .-.....+.=|..+|.++.|+++  |.+|++|+..+.+-+|.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-~~~t~t~lHWH~~~V~~L~fS~~--G~~LlSGG~E~VLv~Wq  279 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-DSETCTLLHWHHDEVNSLSFSSD--GAYLLSGGREGVLVLWQ  279 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEecccccc-ccccceEEEecccccceeEEecC--CceEeecccceEEEEEe
Confidence            3555689999999999999999999999997654110 11234556678899999999999  99999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec-ccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM-FRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~  165 (240)
                      +.++       + .+-++.-.+.|..+.++|  ++.+.+....|++|.+....+.      +....+.+....... ...
T Consensus       280 ~~T~-------~-kqfLPRLgs~I~~i~vS~--ds~~~sl~~~DNqI~li~~~dl------~~k~tIsgi~~~~~~~k~~  343 (792)
T KOG1963|consen  280 LETG-------K-KQFLPRLGSPILHIVVSP--DSDLYSLVLEDNQIHLIKASDL------EIKSTISGIKPPTPSTKTR  343 (792)
T ss_pred             ecCC-------C-cccccccCCeeEEEEEcC--CCCeEEEEecCceEEEEeccch------hhhhhccCccCCCcccccc
Confidence            9875       3 333445568899999999  9999999999999999877542      222222211111000 000


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                      ..+-...++.+|...     .++..+..     +.|.+||+.+....+.+
T Consensus       344 ~~~l~t~~~idpr~~-----~~vln~~~-----g~vQ~ydl~td~~i~~~  383 (792)
T KOG1963|consen  344 PQSLTTGVSIDPRTN-----SLVLNGHP-----GHVQFYDLYTDSTIYKL  383 (792)
T ss_pred             ccccceeEEEcCCCC-----ceeecCCC-----ceEEEEeccccceeeeE
Confidence            112223778888544     56777777     99999999887665443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.44  E-value=3.4e-14  Score=109.76  Aligned_cols=156  Identities=13%  Similarity=0.081  Sum_probs=133.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      +.|..+.|-.+.+++|++-. ..+.|||-.+      ..++.++.| ..|..+.|-|.  --+|++++..|.++.-|+..
T Consensus       171 Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G------tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~  240 (545)
T KOG1272|consen  171 ETVRDVTFLHNEQFFAVAQK-KYVYVYDNNG------TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVST  240 (545)
T ss_pred             hhhhhhhhhcchHHHHhhhh-ceEEEecCCC------cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeech
Confidence            46888889888889998865 7899999763      456777765 57899999997  77888899999999999988


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      +       +.+..+....+.+..++-+|  -+..+-+|..+|+|.+|....      .++...+..|..+++        
T Consensus       241 G-------klVa~~~t~~G~~~vm~qNP--~NaVih~GhsnGtVSlWSP~s------kePLvKiLcH~g~V~--------  297 (545)
T KOG1272|consen  241 G-------KLVASIRTGAGRTDVMKQNP--YNAVIHLGHSNGTVSLWSPNS------KEPLVKILCHRGPVS--------  297 (545)
T ss_pred             h-------hhhHHHHccCCccchhhcCC--ccceEEEcCCCceEEecCCCC------cchHHHHHhcCCCcc--------
Confidence            8       88888887778888888888  788899999999999999887      466667778888888        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                        ++++.+.+.     |++|.+.|     +.++|||++...
T Consensus       298 --siAv~~~G~-----YMaTtG~D-----r~~kIWDlR~~~  326 (545)
T KOG1272|consen  298 --SIAVDRGGR-----YMATTGLD-----RKVKIWDLRNFY  326 (545)
T ss_pred             --eEEECCCCc-----EEeecccc-----cceeEeeecccc
Confidence              999999998     99999999     999999999865

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.43  E-value=4.1e-12  Score=100.90  Aligned_cols=179  Identities=13%  Similarity=0.146  Sum_probs=122.1

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295           14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ   93 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   93 (240)
                      .++++.-..-|..++....|+=+++.     .++-+..+....+.++++..++.  ..+|++|+.+|.|..||.+..   
T Consensus       138 Dm~y~~~scDly~~gsg~evYRlNLE-----qGrfL~P~~~~~~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~k---  207 (703)
T KOG2321|consen  138 DMKYHKPSCDLYLVGSGSEVYRLNLE-----QGRFLNPFETDSGELNVVSINEE--HGLLACGTEDGVVEFWDPRDK---  207 (703)
T ss_pred             cccccCCCccEEEeecCcceEEEEcc-----ccccccccccccccceeeeecCc--cceEEecccCceEEEecchhh---
Confidence            34444433333344444567777787     55677778777789999999998  888999999999999999875   


Q ss_pred             CcccEEEEEee------ec-----cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           94 PLQWKLCKSFE------ST-----STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        94 ~~~~~~~~~~~------~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                          ..+..+.      .+     ...|+++.|+.  +|..+++|+.+|.|.|||+++..++     ...-.....+|. 
T Consensus       208 ----srv~~l~~~~~v~s~pg~~~~~svTal~F~d--~gL~~aVGts~G~v~iyDLRa~~pl-----~~kdh~~e~pi~-  275 (703)
T KOG2321|consen  208 ----SRVGTLDAASSVNSHPGGDAAPSVTALKFRD--DGLHVAVGTSTGSVLIYDLRASKPL-----LVKDHGYELPIK-  275 (703)
T ss_pred             ----hhheeeecccccCCCccccccCcceEEEecC--CceeEEeeccCCcEEEEEcccCCce-----eecccCCcccee-
Confidence                3333322      12     23489999987  8999999999999999999984221     111112222333 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                               .+.|.+...   ...+++...      ..++|||-.+++.....    +    -+..++++++-|+.|.
T Consensus       276 ---------~l~~~~~~~---q~~v~S~Dk------~~~kiWd~~~Gk~~asi----E----pt~~lND~C~~p~sGm  327 (703)
T KOG2321|consen  276 ---------KLDWQDTDQ---QNKVVSMDK------RILKIWDECTGKPMASI----E----PTSDLNDFCFVPGSGM  327 (703)
T ss_pred             ---------eecccccCC---CceEEecch------HHhhhcccccCCceeec----c----ccCCcCceeeecCCce
Confidence                     788988743   225555544      89999998887633222    2    2336999999999873

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=7.3e-12  Score=94.39  Aligned_cols=185  Identities=15%  Similarity=0.283  Sum_probs=121.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .+..++|++.-.-+|++..|-.|++|+-...      +...++ .....|.+++|-|. .+..|+.++.. -|++|....
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst------~pt~Lks~sQrnvtclawRPl-saselavgCr~-gIciW~~s~  171 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST------CPTKLKSVSQRNVTCLAWRPL-SASELAVGCRA-GICIWSDSR  171 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC------CCceecchhhcceeEEEeccC-Ccceeeeeecc-eeEEEEcCc
Confidence            6778999997788999999999999998632      222332 22456999999887 34577777765 488998653


Q ss_pred             ccCCCc-----ccEEEE--EeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           90 EDAQPL-----QWKLCK--SFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        90 ~~~~~~-----~~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      ......     .-.+.+  ..++| ..|+++.|.+  +|..+++++ .|..|.|||..+.      ..+.-.....+.++
T Consensus       172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~--dgt~l~tAS~gsssi~iWdpdtg------~~~pL~~~glgg~s  242 (445)
T KOG2139|consen  172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE--DGTILVTASFGSSSIMIWDPDTG------QKIPLIPKGLGGFS  242 (445)
T ss_pred             ccccccccccccccchhheeCCCC-ceeeEEEEcC--CCCEEeecccCcceEEEEcCCCC------CcccccccCCCcee
Confidence            211000     001111  12234 7899999988  999998887 5678999999873      22211111122222


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                -+.|+|++.     +|..+..|     +..++|+....   |....-..    -++.|...+|+|+|-
T Consensus       243 ----------lLkwSPdgd-----~lfaAt~d-----avfrlw~e~q~---wt~erw~l----gsgrvqtacWspcGs  293 (445)
T KOG2139|consen  243 ----------LLKWSPDGD-----VLFAATCD-----AVFRLWQENQS---WTKERWIL----GSGRVQTACWSPCGS  293 (445)
T ss_pred             ----------eEEEcCCCC-----EEEEeccc-----ceeeeehhccc---ceecceec----cCCceeeeeecCCCC
Confidence                      788999998     88888888     99999965331   22211111    222899999999984

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=2.1e-11  Score=99.31  Aligned_cols=184  Identities=13%  Similarity=0.100  Sum_probs=111.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~   80 (240)
                      +..+...+.+.+|+|+|+.|+..+.+   ..|.+|++...   ..+.+.   ...+......|+|+  |+.++ +.+.++
T Consensus       199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g---~~~~l~---~~~g~~~~~~~SpD--G~~l~~~~s~~g  270 (433)
T PRK04922        199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG---QRELVA---SFRGINGAPSFSPD--GRRLALTLSRDG  270 (433)
T ss_pred             eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---CEEEec---cCCCCccCceECCC--CCEEEEEEeCCC
Confidence            45566678899999999999988743   46999999733   223332   23344557899999  88665 445555


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEE--EecCcccccceeEEeeeec
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVY--ELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw--~~~~~~~~~~~~~~~~~~~  155 (240)
                        .|.+||+..+       . ...+..+.......+|+|  +|..|+..+ .+|...+|  ++.+      .+. ..+..
T Consensus       271 ~~~Iy~~d~~~g-------~-~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~------g~~-~~lt~  333 (433)
T PRK04922        271 NPEIYVMDLGSR-------Q-LTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASG------GSA-ERLTF  333 (433)
T ss_pred             CceEEEEECCCC-------C-eEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCC------CCe-EEeec
Confidence              5888888654       2 233444444456789999  998887766 34554444  4433      111 11211


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      ......          ..+|+|++.     .|+....+++.  ..|.+|++.++...     .+.    +.......+|+
T Consensus       334 ~g~~~~----------~~~~SpDG~-----~Ia~~~~~~~~--~~I~v~d~~~g~~~-----~Lt----~~~~~~~p~~s  387 (433)
T PRK04922        334 QGNYNA----------RASVSPDGK-----KIAMVHGSGGQ--YRIAVMDLSTGSVR-----TLT----PGSLDESPSFA  387 (433)
T ss_pred             CCCCcc----------CEEECCCCC-----EEEEEECCCCc--eeEEEEECCCCCeE-----ECC----CCCCCCCceEC
Confidence            111111          678999997     66665543100  26888888665321     221    11134567899


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      ||+.
T Consensus       388 pdG~  391 (433)
T PRK04922        388 PNGS  391 (433)
T ss_pred             CCCC
Confidence            9974

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=2.3e-11  Score=96.70  Aligned_cols=198  Identities=14%  Similarity=0.139  Sum_probs=126.8

Q ss_pred             ccccceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCC--------C--cEEEE-------------eEeeecCc-----
Q 026295            7 TLDKGTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSS--------S--SFTCN-------------LKTKVHAG-----   57 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~--------~--~~~~~-------------~~~~~h~~-----   57 (240)
                      .|...-+.|..+|||+| +|+|.+--.|++||+.+-.-        .  ...++             +.+.-|..     
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            35677889999999986 66777888999999873210        0  00000             11111110     


Q ss_pred             ------cEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295           58 ------AILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG  131 (240)
Q Consensus        58 ------~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg  131 (240)
                            .-.+++++..  ..-|+.++....|.-+++..+       .-+..+......++++..++  -..+|++|+.+|
T Consensus       129 ~~RIP~~GRDm~y~~~--scDly~~gsg~evYRlNLEqG-------rfL~P~~~~~~~lN~v~in~--~hgLla~Gt~~g  197 (703)
T KOG2321|consen  129 RTRIPKFGRDMKYHKP--SCDLYLVGSGSEVYRLNLEQG-------RFLNPFETDSGELNVVSINE--EHGLLACGTEDG  197 (703)
T ss_pred             eeecCcCCccccccCC--CccEEEeecCcceEEEEcccc-------ccccccccccccceeeeecC--ccceEEecccCc
Confidence                  1124444433  322444444456776777766       77777777778899999988  777799999999


Q ss_pred             cEEEEEecCcccccceeEEeeeecccc-eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQNAID-SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .|.+||.+.-      ..+..+..... .-.+.+.....++++.|+-++-     .+++|.++     |.|.|||+++..
T Consensus       198 ~VEfwDpR~k------srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-----~~aVGts~-----G~v~iyDLRa~~  261 (703)
T KOG2321|consen  198 VVEFWDPRDK------SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-----HVAVGTST-----GSVLIYDLRASK  261 (703)
T ss_pred             eEEEecchhh------hhheeeecccccCCCccccccCcceEEEecCCce-----eEEeeccC-----CcEEEEEcccCC
Confidence            9999999973      32323222111 1123333444566999998876     79999999     999999999865


Q ss_pred             CCcceeEeeecCCCCCCceEEEEEecC
Q 026295          211 NRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      .....     -| +-.-+|..+.|.+.
T Consensus       262 pl~~k-----dh-~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  262 PLLVK-----DH-GYELPIKKLDWQDT  282 (703)
T ss_pred             ceeec-----cc-CCccceeeeccccc
Confidence            44222     11 23447888888665

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.3e-11  Score=94.42  Aligned_cols=168  Identities=11%  Similarity=0.081  Sum_probs=114.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCC-C-EE-EEEecC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFG-D-AV-ACICSD   79 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~-~-~l-~s~~~d   79 (240)
                      ...|...|.++.|+|||++|++-+.| ..+||+..     ++..+....  .-........|+.+..+ . ++ +....-
T Consensus       182 e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~-----~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~  255 (398)
T KOG0771|consen  182 EIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN-----TGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPG  255 (398)
T ss_pred             hHhhcCccccceeCCCCcEEEEecCC-ceEEEEec-----cCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCC
Confidence            45688899999999999999999999 99999998     333333322  12233455667665111 2 22 233334


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAID  158 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~  158 (240)
                      +.|+.|++......  .+...+........|.+++.++  +|++++.|+.||.|.|++..+      .+..+-. +.|..
T Consensus       256 ~~v~~~~~~~w~~~--~~l~~~~~~~~~~siSsl~VS~--dGkf~AlGT~dGsVai~~~~~------lq~~~~vk~aH~~  325 (398)
T KOG0771|consen  256 GGVRLCDISLWSGS--NFLRLRKKIKRFKSISSLAVSD--DGKFLALGTMDGSVAIYDAKS------LQRLQYVKEAHLG  325 (398)
T ss_pred             CceeEEEeeeeccc--cccchhhhhhccCcceeEEEcC--CCcEEEEeccCCcEEEEEece------eeeeEeehhhhee
Confidence            56777777543211  0012222222346789999998  999999999999999999876      4544433 34555


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .|+          .+.|+|+..     +++.-+++     ..+.|..+.-
T Consensus       326 ~VT----------~ltF~Pdsr-----~~~svSs~-----~~~~v~~l~v  355 (398)
T KOG0771|consen  326 FVT----------GLTFSPDSR-----YLASVSSD-----NEAAVTKLAV  355 (398)
T ss_pred             eee----------eEEEcCCcC-----cccccccC-----CceeEEEEee
Confidence            555          999999987     78887877     8888888765

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.38  E-value=8.6e-12  Score=102.11  Aligned_cols=164  Identities=17%  Similarity=0.262  Sum_probs=117.1

Q ss_pred             ceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEE
Q 026295           11 GTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLW   85 (240)
Q Consensus        11 ~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iw   85 (240)
                      .+++++|.+. -..++.|+..|.|.-=...+....   ..+....+..|.++|+.+.++|-  +. +|++++ |.+|+||
T Consensus       349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF--~~k~fls~g-DW~vriW  425 (555)
T KOG1587|consen  349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPF--YPKNFLSVG-DWTVRIW  425 (555)
T ss_pred             ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCC--ccceeeeec-cceeEec
Confidence            6889999984 468999999999876333221100   11234455678999999999997  54 455554 9999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      ......      .++..+..+...+++++|||.+ ...|+++..||.+.+||+....    ..++...........    
T Consensus       426 s~~~~~------~Pl~~~~~~~~~v~~vaWSptr-pavF~~~d~~G~l~iWDLl~~~----~~Pv~s~~~~~~~l~----  490 (555)
T KOG1587|consen  426 SEDVIA------SPLLSLDSSPDYVTDVAWSPTR-PAVFATVDGDGNLDIWDLLQDD----EEPVLSQKVCSPALT----  490 (555)
T ss_pred             cccCCC------CcchhhhhccceeeeeEEcCcC-ceEEEEEcCCCceehhhhhccc----cCCcccccccccccc----
Confidence            986221      6777777777889999999953 3458889999999999998632    222222222222222    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                            .+.|++.+.     +|++|...     |.+++|++..
T Consensus       491 ------~~~~s~~g~-----~lavGd~~-----G~~~~~~l~~  517 (555)
T KOG1587|consen  491 ------RVRWSPNGK-----LLAVGDAN-----GTTHILKLSE  517 (555)
T ss_pred             ------eeecCCCCc-----EEEEecCC-----CcEEEEEcCc
Confidence                  788999887     89999998     9999999964

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.38  E-value=1.4e-10  Score=94.34  Aligned_cols=186  Identities=12%  Similarity=0.022  Sum_probs=110.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE-ecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI-CSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d~   80 (240)
                      +..+...+...+|+|||+.|+..+.   +..|.+|++...   ..+.+..+.+   .+..+.|+|+  |+.|+.. ..++
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G---~~~~l~~~~~---~~~~~~~SPD--G~~La~~~~~~g  265 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---AVRQVASFPR---HNGAPAFSPD--GSKLAFALSKTG  265 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---CeEEccCCCC---CcCCeEECCC--CCEEEEEEcCCC
Confidence            3345567889999999999887642   356889998732   2334443433   3456899999  9877754 4455


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-CcEEEEEecCcccccceeEEeeeeccc
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                        .|.+||+..+       .. ..+......+....|+|  +|+.|+..+.+ +...+|.+....    .+ ...+....
T Consensus       266 ~~~I~~~d~~tg-------~~-~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~----g~-~~~lt~~~  330 (429)
T PRK03629        266 SLNLYVMDLASG-------QI-RQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNING----GA-PQRITWEG  330 (429)
T ss_pred             CcEEEEEECCCC-------CE-EEccCCCCCcCceEECC--CCCEEEEEeCCCCCceEEEEECCC----CC-eEEeecCC
Confidence              5788888654       32 23333345677899999  99988776653 555666543210    11 11222111


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ....          ...|+|++.     +|+..+.+++.  ..|.+||+.++..     ..+..  .+  .....+|+||
T Consensus       331 ~~~~----------~~~~SpDG~-----~Ia~~~~~~g~--~~I~~~dl~~g~~-----~~Lt~--~~--~~~~p~~SpD  384 (429)
T PRK03629        331 SQNQ----------DADVSSDGK-----FMVMVSSNGGQ--QHIAKQDLATGGV-----QVLTD--TF--LDETPSIAPN  384 (429)
T ss_pred             CCcc----------CEEECCCCC-----EEEEEEccCCC--ceEEEEECCCCCe-----EEeCC--CC--CCCCceECCC
Confidence            1112          678999987     67666544211  3577778766531     12221  11  2346789999


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       385 G~  386 (429)
T PRK03629        385 GT  386 (429)
T ss_pred             CC
Confidence            74

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.37  E-value=2.4e-11  Score=89.21  Aligned_cols=186  Identities=13%  Similarity=0.104  Sum_probs=130.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED   91 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   91 (240)
                      ..++.|++.+..+++...+|.+.+-+....   ..+.++.++.|+-+++...|+.. ..+++.+|+.|+.+..||++...
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~---~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p~  199 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEM---VLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIPK  199 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEeccee---eeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCCc
Confidence            346788899999999999999986555432   45566688999999999999765 36889999999999999998432


Q ss_pred             CCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295           92 AQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA  171 (240)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (240)
                      .     ...+..+-|...|.+|.-+|. .+.++++|+.|..|++||.|..     ++++..-.. .+.|.          
T Consensus       200 ~-----~i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm-----~kPl~~~~v-~GGVW----------  257 (339)
T KOG0280|consen  200 T-----FIWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNM-----GKPLFKAKV-GGGVW----------  257 (339)
T ss_pred             c-----eeeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcc-----cCccccCcc-ccceE----------
Confidence            1     233335668899999988864 6778999999999999999953     233222111 12333          


Q ss_pred             eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       172 ~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .+.++|...   ..+|+++..      +-.+|-+.+....+.  ...++.+..|.+-.+.-.|
T Consensus       258 Ri~~~p~~~---~~lL~~CMh------~G~ki~~~~~~~~e~--~~~~~s~~~hdSl~YG~DW  309 (339)
T KOG0280|consen  258 RIKHHPEIF---HRLLAACMH------NGAKILDSSDKVLEF--QIVLPSDKIHDSLCYGGDW  309 (339)
T ss_pred             EEEecchhh---hHHHHHHHh------cCceEEEecccccch--heeeeccccccceeecccc
Confidence            788888764   334555544      667887877665442  2233455567767776666

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=8.1e-11  Score=89.49  Aligned_cols=161  Identities=12%  Similarity=0.118  Sum_probs=121.8

Q ss_pred             ceEEEEECCCC-CEEEEEeCC--CcEEEEeCCCCCCCcEEEEeEee-------ecCc--cEEEEEEcCCCCCCEEEEEec
Q 026295           11 GTTSSSWNYCG-QRLATGSTD--GTLSIFDSPDPSSSSFTCNLKTK-------VHAG--AILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus        11 ~v~~~~~s~~~-~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~-------~h~~--~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      .+..+.-++.. ..+|+|+..  ..++|||+...     +.+..-+       +-.-  -++++.|-+......|++++.
T Consensus       150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~-----~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~  224 (412)
T KOG3881|consen  150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQS-----KQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR  224 (412)
T ss_pred             ceeeeccCCCCCceEecCchhcccceeeeecccc-----eeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec
Confidence            34445545544 456668888  78999999832     2222211       0111  245778876533468999999


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee-eeccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE-FQNAI  157 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~  157 (240)
                      -+.|++||.+.+.      +++..|.-.+..++++...|  +++++.+|..-|.+..||++.      ..+... +.+..
T Consensus       225 ~hqvR~YDt~~qR------RPV~~fd~~E~~is~~~l~p--~gn~Iy~gn~~g~l~~FD~r~------~kl~g~~~kg~t  290 (412)
T KOG3881|consen  225 YHQVRLYDTRHQR------RPVAQFDFLENPISSTGLTP--SGNFIYTGNTKGQLAKFDLRG------GKLLGCGLKGIT  290 (412)
T ss_pred             ceeEEEecCcccC------cceeEeccccCcceeeeecC--CCcEEEEecccchhheecccC------ceeeccccCCcc
Confidence            9999999998653      68888888889999999988  999999999999999999997      444433 66666


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      +.++          ++..+|...     +||+++-|     +.|||||..+..
T Consensus       291 Gsir----------sih~hp~~~-----~las~GLD-----RyvRIhD~ktrk  323 (412)
T KOG3881|consen  291 GSIR----------SIHCHPTHP-----VLASCGLD-----RYVRIHDIKTRK  323 (412)
T ss_pred             CCcc----------eEEEcCCCc-----eEEeeccc-----eeEEEeecccch
Confidence            6676          899999987     99999999     999999998854

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=2.5e-11  Score=102.72  Aligned_cols=168  Identities=11%  Similarity=0.170  Sum_probs=115.8

Q ss_pred             cceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc--EEEEEEcCCCCCC-EEEEEecCCeEEEE
Q 026295           10 KGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA--ILKVVWVPPEFGD-AVACICSDGSLLLW   85 (240)
Q Consensus        10 ~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~-~l~s~~~d~~v~iw   85 (240)
                      ..|+++.-+. .|+.+++|..||.|++||.+-..  ....+...+.|+..  |..+.+.+.  |. .+++|+.||.|++|
T Consensus      1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~--~ds~v~~~R~h~~~~~Iv~~slq~~--G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP--PDSLVCVYREHNDVEPIVHLSLQRQ--GLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred             ccceeecccccCCceEEEeecCCceEEeecccCC--ccccceeecccCCcccceeEEeecC--CCcceeeeccCCeEEEE
Confidence            3566665443 46999999999999999987543  22456677788877  999999887  43 48999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeec---cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           86 EEIVEDAQPLQWKLCKSFEST---STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      |++....     ....++..+   .+..+++..++  ....+|+|+. +.|+||++..       +.+..+.......  
T Consensus      1285 DlR~~~~-----e~~~~iv~~~~yGs~lTal~VH~--hapiiAsGs~-q~ikIy~~~G-------~~l~~~k~n~~F~-- 1347 (1387)
T KOG1517|consen 1285 DLRMSSK-----ETFLTIVAHWEYGSALTALTVHE--HAPIIASGSA-QLIKIYSLSG-------EQLNIIKYNPGFM-- 1347 (1387)
T ss_pred             ecccCcc-----cccceeeeccccCccceeeeecc--CCCeeeecCc-ceEEEEecCh-------hhhcccccCcccc--
Confidence            9987411     111122221   23588999977  7888899888 9999999874       2222222211110  


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                       +...-.+.+++|+|...     +||+|+.|     .+|.||....+
T Consensus      1348 -~q~~gs~scL~FHP~~~-----llAaG~~D-----s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 -GQRIGSVSCLAFHPHRL-----LLAAGSAD-----STVSIYSCEKP 1383 (1387)
T ss_pred             -cCcCCCcceeeecchhH-----hhhhccCC-----ceEEEeecCCc
Confidence             11111234899999987     78888777     99999987653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.34  E-value=4.1e-10  Score=83.69  Aligned_cols=164  Identities=9%  Similarity=0.154  Sum_probs=113.2

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCeEEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGSLLLWE   86 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~v~iwd   86 (240)
                      ....|.++.++++  +|++.-. +.|.||....+    .+.++.+.....+---.+..|.....+|+. |-.-|.|+|-|
T Consensus        93 f~~~I~~V~l~r~--riVvvl~-~~I~VytF~~n----~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d  165 (346)
T KOG2111|consen   93 FNSEIKAVKLRRD--RIVVVLE-NKIYVYTFPDN----PKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD  165 (346)
T ss_pred             eccceeeEEEcCC--eEEEEec-CeEEEEEcCCC----hhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence            3457777777654  5666655 68999998743    244444443222211223334422445554 34568999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcE-EEEEecCcccccceeEEeeeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV-KVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      +.....     .....+..|.+.|.+++.+-  .|..+|+++..|++ +|||..+      ++.++++......      
T Consensus       166 L~~~~~-----~~p~~I~AH~s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~------g~~l~E~RRG~d~------  226 (346)
T KOG2111|consen  166 LASTKP-----NAPSIINAHDSDIACVALNL--QGTLVATASTKGTLIRIFDTED------GTLLQELRRGVDR------  226 (346)
T ss_pred             hhhcCc-----CCceEEEcccCceeEEEEcC--CccEEEEeccCcEEEEEEEcCC------CcEeeeeecCCch------
Confidence            976421     13477889999999999977  99999999999985 8999998      6777777644322      


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                        +.+.+++|+|+..     +||+++.-     |+|+||.++..
T Consensus       227 --A~iy~iaFSp~~s-----~LavsSdK-----gTlHiF~l~~~  258 (346)
T KOG2111|consen  227 --ADIYCIAFSPNSS-----WLAVSSDK-----GTLHIFSLRDT  258 (346)
T ss_pred             --heEEEEEeCCCcc-----EEEEEcCC-----CeEEEEEeecC
Confidence              2234999999998     88888877     99999999764

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.34  E-value=2.9e-10  Score=90.67  Aligned_cols=171  Identities=13%  Similarity=0.102  Sum_probs=123.3

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee---ecCccEEEEEE------cCC------------CCCCEEEEE
Q 026295           18 NYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK---VHAGAILKVVW------VPP------------EFGDAVACI   76 (240)
Q Consensus        18 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~h~~~v~~~~~------~~~------------~~~~~l~s~   76 (240)
                      .|.+.++|....||.++||+...+     +....+.   .-++...+..|      +|.            ..-..++-|
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~-----~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg   76 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKN-----QLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG   76 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCc-----eeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence            355689999999999999999854     2222222   11222333333      221            012356667


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      ...|.|.+|++..+       +....+.  .|...|.++.++.  +-..|.+++.|+.+..|+...      ...+....
T Consensus        77 t~~g~v~~ys~~~g-------~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~------~~~~~~~~  141 (541)
T KOG4547|consen   77 TPQGSVLLYSVAGG-------EITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKE------KVIIRIWK  141 (541)
T ss_pred             cCCccEEEEEecCC-------eEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEeccc------ceeeeeec
Confidence            77899999999776       5555554  5888999999876  777899999999999999987      56666666


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .....+.          +++.+|++.     .|++|+       +.|++|+..+.+    .+..   ++||.++|++++|
T Consensus       142 ~~~~~~~----------sl~is~D~~-----~l~~as-------~~ik~~~~~~ke----vv~~---ftgh~s~v~t~~f  192 (541)
T KOG4547|consen  142 EQKPLVS----------SLCISPDGK-----ILLTAS-------RQIKVLDIETKE----VVIT---FTGHGSPVRTLSF  192 (541)
T ss_pred             cCCCccc----------eEEEcCCCC-----EEEecc-------ceEEEEEccCce----EEEE---ecCCCcceEEEEE
Confidence            6655555          899999987     899998       789999998754    3333   4478889999999


Q ss_pred             ecC
Q 026295          235 ALN  237 (240)
Q Consensus       235 sp~  237 (240)
                      --+
T Consensus       193 ~~~  195 (541)
T KOG4547|consen  193 TTL  195 (541)
T ss_pred             EEe
Confidence            654

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.33  E-value=7.5e-10  Score=82.30  Aligned_cols=108  Identities=18%  Similarity=0.225  Sum_probs=88.1

Q ss_pred             CCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-EEEEEeeeccCCCccc
Q 026295           20 CGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-LLLWEEIVEDAQPLQW   97 (240)
Q Consensus        20 ~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~   97 (240)
                      +..+||.- -.-|.|+|-|+....   ......+..|...|.+++.+.+  |.++|+++..|+ |||||..++       
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~---~~~p~~I~AH~s~Iacv~Ln~~--Gt~vATaStkGTLIRIFdt~~g-------  214 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTK---PNAPSIINAHDSDIACVALNLQ--GTLVATASTKGTLIRIFDTEDG-------  214 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcC---cCCceEEEcccCceeEEEEcCC--ccEEEEeccCcEEEEEEEcCCC-------
Confidence            34455553 355899999997432   1123567789999999999998  999999999996 799999888       


Q ss_pred             EEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           98 KLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        98 ~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      .++.+++.  ....|.+++|+|  +..+|++++..|+|+|+.++..
T Consensus       215 ~~l~E~RRG~d~A~iy~iaFSp--~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  215 TLLQELRRGVDRADIYCIAFSP--NSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cEeeeeecCCchheEEEEEeCC--CccEEEEEcCCCeEEEEEeecC
Confidence            78888874  457899999999  9999999999999999999864

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.7e-10  Score=93.78  Aligned_cols=182  Identities=14%  Similarity=0.156  Sum_probs=107.7

Q ss_pred             ccccceEEEEECCCCCEEEEE-eCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeE
Q 026295            7 TLDKGTTSSSWNYCGQRLATG-STDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSL   82 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~-~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v   82 (240)
                      .+.+.+...+|+|||++|+.. +.++  .|.+||+..     .+.. .+..+...+....|+|+  |+.|+..+. ++..
T Consensus       240 ~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t-----g~~~-~lt~~~~~~~~~~wSPD--G~~I~f~s~~~g~~  311 (429)
T PRK03629        240 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-----GQIR-QVTDGRSNNTEPTWFPD--SQNLAYTSDQAGRP  311 (429)
T ss_pred             CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC-----CCEE-EccCCCCCcCceEECCC--CCEEEEEeCCCCCc
Confidence            344455678999999988865 4445  488888873     2222 23333456778999999  988776654 4555


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeecccce
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .||.+....+     . ...+...........|+|  +|.+++..+.+   ..|.+||+.+.      +. ..+... ..
T Consensus       312 ~Iy~~d~~~g-----~-~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g------~~-~~Lt~~-~~  375 (429)
T PRK03629        312 QVYKVNINGG-----A-PQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATG------GV-QVLTDT-FL  375 (429)
T ss_pred             eEEEEECCCC-----C-eEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCC------Ce-EEeCCC-CC
Confidence            6665432211     1 222222333456788999  99988776543   34777887652      21 122211 01


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      .          ....|+|++.     .|+.++.+..  ...+.+++++...     ...+.   +|...+...+|+|-
T Consensus       376 ~----------~~p~~SpDG~-----~i~~~s~~~~--~~~l~~~~~~G~~-----~~~l~---~~~~~~~~p~Wsp~  428 (429)
T PRK03629        376 D----------ETPSIAPNGT-----MVIYSSSQGM--GSVLNLVSTDGRF-----KARLP---ATDGQVKFPAWSPY  428 (429)
T ss_pred             C----------CCceECCCCC-----EEEEEEcCCC--ceEEEEEECCCCC-----eEECc---cCCCCcCCcccCCC
Confidence            1          1578999997     7877776620  0135556654322     12233   35558999999984

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.33  E-value=2.5e-10  Score=92.76  Aligned_cols=184  Identities=14%  Similarity=0.107  Sum_probs=108.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~   80 (240)
                      +..+...+...+|+|+|++|+.+..+   ..|++|++...     +. ..+..+.+.+..+.|+|+  |+.|+ +...++
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-----~~-~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~  256 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-----QR-EKVASFPGMNGAPAFSPD--GSKLAVSLSKDG  256 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-----CE-EEeecCCCCccceEECCC--CCEEEEEECCCC
Confidence            44455568889999999999987654   47999998732     22 122334556777999999  88665 444444


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecCcccccceeEEeeeec
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                        .|.+|++..+       . ...+..+........|+|  ++..|+..+. ++  .|.++++.+      .+. ..+..
T Consensus       257 ~~~i~~~d~~~~-------~-~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~------~~~-~~l~~  319 (417)
T TIGR02800       257 NPDIYVMDLDGK-------Q-LTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADG------GEV-RRLTF  319 (417)
T ss_pred             CccEEEEECCCC-------C-EEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCC------CCE-EEeec
Confidence              4777777653       2 222333333445678988  9988776654 34  456666553      121 12222


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      ......          ...|+|++.     +|+....+.  ....|.+|++.++.  ..   .+... .   .....+|+
T Consensus       320 ~~~~~~----------~~~~spdg~-----~i~~~~~~~--~~~~i~~~d~~~~~--~~---~l~~~-~---~~~~p~~s  373 (417)
T TIGR02800       320 RGGYNA----------SPSWSPDGD-----LIAFVHREG--GGFNIAVMDLDGGG--ER---VLTDT-G---LDESPSFA  373 (417)
T ss_pred             CCCCcc----------CeEECCCCC-----EEEEEEccC--CceEEEEEeCCCCC--eE---EccCC-C---CCCCceEC
Confidence            222222          678999987     677776652  00166777765532  11   11111 1   23456899


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      ||+.
T Consensus       374 pdg~  377 (417)
T TIGR02800       374 PNGR  377 (417)
T ss_pred             CCCC
Confidence            9874

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.31  E-value=2.5e-11  Score=102.26  Aligned_cols=151  Identities=18%  Similarity=0.202  Sum_probs=117.0

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCC
Q 026295           15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQP   94 (240)
Q Consensus        15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~   94 (240)
                      +-++++.-++++|+.-+.|.+|+.....    .+. .+.+|++.|..+.|+.+  |.++++.+.|.++++|++.+..   
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn----~p~-~l~GHeG~iF~i~~s~d--g~~i~s~SdDRsiRlW~i~s~~---  208 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDN----KPI-RLKGHEGSIFSIVTSLD--GRYIASVSDDRSIRLWPIDSRE---  208 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccC----Ccc-eecccCCceEEEEEccC--CcEEEEEecCcceeeeeccccc---
Confidence            3456677799999999999999997332    222 57899999999999999  9999999999999999998762   


Q ss_pred             cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce-eeccccccceeeeE
Q 026295           95 LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS-VTMFRKASCISASI  173 (240)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~v  173 (240)
                         ......-+|+..|+.++|.|  +  .+++++.|.+.++|+...       .....+..|... +.          .+
T Consensus       209 ---~~~~~~fgHsaRvw~~~~~~--n--~i~t~gedctcrvW~~~~-------~~l~~y~~h~g~~iw----------~~  264 (967)
T KOG0974|consen  209 ---VLGCTGFGHSARVWACCFLP--N--RIITVGEDCTCRVWGVNG-------TQLEVYDEHSGKGIW----------KI  264 (967)
T ss_pred             ---ccCcccccccceeEEEEecc--c--eeEEeccceEEEEEeccc-------ceehhhhhhhhccee----------EE
Confidence               22235567999999999998  6  799999999999997653       222255555332 22          56


Q ss_pred             EEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          174 SWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       174 ~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      ...+...     .++|++.|     +.+++|++...
T Consensus       265 ~~~~~~~-----~~vT~g~D-----s~lk~~~l~~r  290 (967)
T KOG0974|consen  265 AVPIGVI-----IKVTGGND-----STLKLWDLNGR  290 (967)
T ss_pred             EEcCCce-----EEEeeccC-----cchhhhhhhcc
Confidence            6666665     78888888     99999998653

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=3.9e-10  Score=91.69  Aligned_cols=183  Identities=14%  Similarity=0.174  Sum_probs=107.6

Q ss_pred             cccceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iw   85 (240)
                      ..+.+...+|+|+|+.|+ +.+.++...||.++..   .. ....+..+.+......|+|+  |+.++..+. ++...+|
T Consensus       238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~---~~-~~~~lt~~~~~~~~~~wSpD--G~~l~f~s~~~g~~~Iy  311 (427)
T PRK02889        238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD---GS-GLRRLTQSSGIDTEPFFSPD--GRSIYFTSDRGGAPQIY  311 (427)
T ss_pred             CCCCccceEECCCCCEEEEEEccCCCceEEEEECC---CC-CcEECCCCCCCCcCeEEcCC--CCEEEEEecCCCCcEEE
Confidence            444566889999999887 4677888777766432   11 12334344455667889999  987775543 5677788


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecccceeec
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      .+....+     .. ..+..........+|+|  +|++++..+.++   .|.+||+.+.      +.. .+... ...  
T Consensus       312 ~~~~~~g-----~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g------~~~-~lt~~-~~~--  373 (427)
T PRK02889        312 RMPASGG-----AA-QRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATG------QVT-ALTDT-TRD--  373 (427)
T ss_pred             EEECCCC-----ce-EEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCC------CeE-EccCC-CCc--
Confidence            7653221     11 11111122344678999  999988777554   5889998752      211 22111 111  


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                              ....|+|++.     .|+.++.+.    +.-.+|-++....   ....+..   +.+.+...+|+|-
T Consensus       374 --------~~p~~spdg~-----~l~~~~~~~----g~~~l~~~~~~g~---~~~~l~~---~~g~~~~p~wsp~  425 (427)
T PRK02889        374 --------ESPSFAPNGR-----YILYATQQG----GRSVLAAVSSDGR---IKQRLSV---QGGDVREPSWGPF  425 (427)
T ss_pred             --------cCceECCCCC-----EEEEEEecC----CCEEEEEEECCCC---ceEEeec---CCCCCCCCccCCC
Confidence                    2678999997     666666553    4444444433221   1222332   3337888999985

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.28  E-value=9e-10  Score=81.10  Aligned_cols=183  Identities=12%  Similarity=0.143  Sum_probs=122.4

Q ss_pred             ceEEEEECC---CCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee------cCccEEEEEEcCCCCCCEEEEEecCC
Q 026295           11 GTTSSSWNY---CGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV------HAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus        11 ~v~~~~~s~---~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+..+.|..   +|. .|+-+..+|.|.+|.....     .....+.+      ......++.|++.  +..++++..+|
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~-----~ss~~L~~ls~~ki~~~~~lslD~~~~--~~~i~vs~s~G  143 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDED-----ESSVHLRGLSSKKISVVEALSLDISTS--GTKIFVSDSRG  143 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccc-----eeeeeecccchhhhhheeeeEEEeecc--CceEEEEcCCC
Confidence            455666653   444 5677778899999987632     22222221      1123457889888  88899998899


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe-eeecccce
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDS  159 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~  159 (240)
                      .+.+-+....     ..+..+.++.|.-.++..+|+.. +.+.+.+|+.|+.+..||+|.|     .+.+. ..+.|...
T Consensus       144 ~~~~v~~t~~-----~le~vq~wk~He~E~Wta~f~~~-~pnlvytGgDD~~l~~~D~R~p-----~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  144 SISGVYETEM-----VLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGGDDGSLSCWDIRIP-----KTFIWHNSKVHTSG  212 (339)
T ss_pred             cEEEEeccee-----eeeecccccccceeeeeeecccC-CCceEEecCCCceEEEEEecCC-----cceeeecceeeecc
Confidence            8885444332     12455678889999999999864 4467999999999999999954     22222 13344444


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      |.          ++.=+|..    +.+++||+.|     ..|++||.++-.+.....       .-.+.|+-+.++|-
T Consensus       213 V~----------SI~ss~~~----~~~I~TGsYD-----e~i~~~DtRnm~kPl~~~-------~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  213 VV----------SIYSSPPK----PTYIATGSYD-----ECIRVLDTRNMGKPLFKA-------KVGGGVWRIKHHPE  264 (339)
T ss_pred             eE----------EEecCCCC----CceEEEeccc-----cceeeeehhcccCccccC-------ccccceEEEEecch
Confidence            43          56555554    4499999999     899999998654332221       12348999999984

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.28  E-value=1.2e-11  Score=92.27  Aligned_cols=142  Identities=15%  Similarity=0.189  Sum_probs=99.1

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeeccC
Q 026295           14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~   92 (240)
                      -.+|||+|+++|+++.- .+.|-|..     +.+..+.+. --..|.-+.|..+  ..+++ ....|+.|.+|++...  
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~-----tlq~~qlf~-cldki~yieW~ad--s~~ilC~~yk~~~vqvwsl~Qp--   81 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSE-----TLQLHQLFL-CLDKIVYIEWKAD--SCHILCVAYKDPKVQVWSLVQP--   81 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccc-----hhhHHHHHH-HHHHhhheeeecc--ceeeeeeeeccceEEEEEeecc--
Confidence            46899999999999875 77788876     555443333 2456778999887  65544 4567889999999864  


Q ss_pred             CCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295           93 QPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA  171 (240)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (240)
                           +-...+.....++..++|+|  +|+ +|.+...+-.|.+|.+.+.    +...+   .-....+.          
T Consensus        82 -----ew~ckIdeg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~----~~~~~---~~pK~~~k----------  137 (447)
T KOG4497|consen   82 -----EWYCKIDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQ----KGYLL---PHPKTNVK----------  137 (447)
T ss_pred             -----eeEEEeccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccc----eeEEe---cccccCce----------
Confidence                 44456677778999999999  995 5566678889999999862    11111   11111112          


Q ss_pred             eEEEeCCCCCCCCceEEEEecCCC
Q 026295          172 SISWNPQKGENQGSSFVLGFNSDT  195 (240)
Q Consensus       172 ~v~~~p~~~~~~~~~l~~~~~dd~  195 (240)
                      .++|+|++.     +.+.++.-|+
T Consensus       138 g~~f~~dg~-----f~ai~sRrDC  156 (447)
T KOG4497|consen  138 GYAFHPDGQ-----FCAILSRRDC  156 (447)
T ss_pred             eEEECCCCc-----eeeeeecccH
Confidence            788999987     6676665543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.25  E-value=1.2e-10  Score=87.53  Aligned_cols=81  Identities=19%  Similarity=0.330  Sum_probs=60.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC------------ccEEEEEEcCCCCCCEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA------------GAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      +-|.++.|+..|.+||||..+|.|.+|.-.....+.......++.|+            ..|+.+.|.++.....++..+
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            35889999999999999999999999987644322233344444443            457899998885456777778


Q ss_pred             cCCeEEEEEeeec
Q 026295           78 SDGSLLLWEEIVE   90 (240)
Q Consensus        78 ~d~~v~iwd~~~~   90 (240)
                      .|.+|++|-+...
T Consensus       106 NdktiKlWKi~er  118 (433)
T KOG1354|consen  106 NDKTIKLWKIRER  118 (433)
T ss_pred             CCcceeeeeeecc
Confidence            8999999987654

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.24  E-value=4.4e-11  Score=100.83  Aligned_cols=117  Identities=12%  Similarity=0.177  Sum_probs=98.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEE-eEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCN-LKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +.+|++.|..+.|+-+|+++++.|+|.++|+|+++.     .+.. ....+|.++|..++|.|.    .+++++.|.+.+
T Consensus       171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s-----~~~~~~~~fgHsaRvw~~~~~~n----~i~t~gedctcr  241 (967)
T KOG0974|consen  171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDS-----REVLGCTGFGHSARVWACCFLPN----RIITVGEDCTCR  241 (967)
T ss_pred             ecccCCceEEEEEccCCcEEEEEecCcceeeeeccc-----ccccCcccccccceeEEEEeccc----eeEEeccceEEE
Confidence            678999999999999999999999999999999984     3333 356689999999999763    799999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +|+...        ..+..+.+|. ..++.++..+  +....++++.|+.+++|++..
T Consensus       242 vW~~~~--------~~l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  242 VWGVNG--------TQLEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEeccc--------ceehhhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhc
Confidence            997654        4444666654 5688999977  778899999999999999864

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.24  E-value=2e-12  Score=106.71  Aligned_cols=117  Identities=16%  Similarity=0.286  Sum_probs=103.3

Q ss_pred             eEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295           50 LKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        50 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      ..+.+|...|+|+.|...  |.++++|+.|..|+||...+.       .++...++|...|+.++.+.  +..++++++.
T Consensus       184 krLlgH~naVyca~fDrt--g~~Iitgsdd~lvKiwS~et~-------~~lAs~rGhs~ditdlavs~--~n~~iaaaS~  252 (1113)
T KOG0644|consen  184 KRLLGHRNAVYCAIFDRT--GRYIITGSDDRLVKIWSMETA-------RCLASCRGHSGDITDLAVSS--NNTMIAAASN  252 (1113)
T ss_pred             HHHHhhhhheeeeeeccc--cceEeecCccceeeeeeccch-------hhhccCCCCccccchhccch--hhhhhhhccc
Confidence            344589999999999888  999999999999999998776       89999999999999999977  8888999999


Q ss_pred             CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      |..|++|.+..      +.++..+.+|.+.|+          +++|+|-.         +.+.|     |++++||.+
T Consensus       253 D~vIrvWrl~~------~~pvsvLrghtgavt----------aiafsP~~---------sss~d-----gt~~~wd~r  300 (1113)
T KOG0644|consen  253 DKVIRVWRLPD------GAPVSVLRGHTGAVT----------AIAFSPRA---------SSSDD-----GTCRIWDAR  300 (1113)
T ss_pred             CceEEEEecCC------CchHHHHhcccccee----------eeccCccc---------cCCCC-----CceEecccc
Confidence            99999999988      677778889999888          99999964         33444     999999987

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.23  E-value=2.6e-09  Score=85.38  Aligned_cols=153  Identities=12%  Similarity=0.157  Sum_probs=123.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe--eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT--KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      -..++-|...|.|.+|+...     ++....+  ..|.+.|.++.++..  -..|.+++.|+.+..|++...       .
T Consensus        70 t~~lvlgt~~g~v~~ys~~~-----g~it~~~st~~h~~~v~~~~~~~~--~~ciyS~~ad~~v~~~~~~~~-------~  135 (541)
T KOG4547|consen   70 TSMLVLGTPQGSVLLYSVAG-----GEITAKLSTDKHYGNVNEILDAQR--LGCIYSVGADLKVVYILEKEK-------V  135 (541)
T ss_pred             ceEEEeecCCccEEEEEecC-----CeEEEEEecCCCCCcceeeecccc--cCceEecCCceeEEEEecccc-------e
Confidence            34788899999999999984     3444444  378999999999887  778999999999999999877       7


Q ss_pred             EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCC
Q 026295           99 LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQ  178 (240)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~  178 (240)
                      .++.+......+.+++.+|  ++..+++++  ++|++||+++      .+.+..|.+|..+++          +++|-..
T Consensus       136 ~~~~~~~~~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~------kevv~~ftgh~s~v~----------t~~f~~~  195 (541)
T KOG4547|consen  136 IIRIWKEQKPLVSSLCISP--DGKILLTAS--RQIKVLDIET------KEVVITFTGHGSPVR----------TLSFTTL  195 (541)
T ss_pred             eeeeeccCCCccceEEEcC--CCCEEEecc--ceEEEEEccC------ceEEEEecCCCcceE----------EEEEEEe
Confidence            8888888888999999999  999999887  4899999998      799999999999988          8888776


Q ss_pred             CCC-CCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          179 KGE-NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       179 ~~~-~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                      -.. ...++|.++..+     ..+.+|-.+.....
T Consensus       196 ~~g~~G~~vLssa~~~-----r~i~~w~v~~~~kk  225 (541)
T KOG4547|consen  196 IDGIIGKYVLSSAAAE-----RGITVWVVEKEDKK  225 (541)
T ss_pred             ccccccceeeeccccc-----cceeEEEEEccccc
Confidence            111 113355566666     88999988775443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2e-09  Score=87.81  Aligned_cols=181  Identities=16%  Similarity=0.191  Sum_probs=103.5

Q ss_pred             ccccceEEEEECCCCCEEE-EEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeE
Q 026295            7 TLDKGTTSSSWNYCGQRLA-TGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSL   82 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~-~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v   82 (240)
                      .+.+...+.+|+|+|+.|+ +.+.++  .|.+||+...     + ...+..+........|+|+  |+.++..+ .++..
T Consensus       245 ~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g-----~-~~~lt~~~~~~~~~~~spD--G~~l~f~sd~~g~~  316 (433)
T PRK04922        245 SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR-----Q-LTRLTNHFGIDTEPTWAPD--GKSIYFTSDRGGRP  316 (433)
T ss_pred             cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC-----C-eEECccCCCCccceEECCC--CCEEEEEECCCCCc
Confidence            3444455789999998775 445555  5888888732     2 2334444455567899999  98877665 45554


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecccce
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .+|.+....+     +. ..+..........+|+|  +|++++..+.++   .|.+||+.+      .+.. .+... ..
T Consensus       317 ~iy~~dl~~g-----~~-~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~------g~~~-~Lt~~-~~  380 (433)
T PRK04922        317 QIYRVAASGG-----SA-ERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLST------GSVR-TLTPG-SL  380 (433)
T ss_pred             eEEEEECCCC-----Ce-EEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCC------CCeE-ECCCC-CC
Confidence            5554432211     21 11211223345689999  999888765443   588999865      2222 22211 11


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      ..          ...|+|++.     .|+..+.+.+  ...|.+++.....     ...+..   +.+.+...+|+|
T Consensus       381 ~~----------~p~~spdG~-----~i~~~s~~~g--~~~L~~~~~~g~~-----~~~l~~---~~g~~~~p~wsp  432 (433)
T PRK04922        381 DE----------SPSFAPNGS-----MVLYATREGG--RGVLAAVSTDGRV-----RQRLVS---ADGEVREPAWSP  432 (433)
T ss_pred             CC----------CceECCCCC-----EEEEEEecCC--ceEEEEEECCCCc-----eEEccc---CCCCCCCCccCC
Confidence            11          578999997     5666554320  0345555553321     222222   233788899998

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.22  E-value=2.6e-10  Score=93.34  Aligned_cols=121  Identities=18%  Similarity=0.336  Sum_probs=92.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC----------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS----------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      ....|++|+.+..++|+|+.||.++|..+....          ..+...-+++.+|.+.|.-+.|+..  .+.|.++..+
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~--~QKLTtSDt~   92 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNEN--NQKLTTSDTS   92 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccc--cccccccCCC
Confidence            468899999999999999999999999875321          1123344677899999999999887  7888899999


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      |.|.+|-+-.+     +|.....-....+.|.+++|..  +|..++....||.|.+=.+.
T Consensus        93 GlIiVWmlykg-----sW~EEMiNnRnKSvV~SmsWn~--dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   93 GLIIVWMLYKG-----SWCEEMINNRNKSVVVSMSWNL--DGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             ceEEEEeeecc-----cHHHHHhhCcCccEEEEEEEcC--CCcEEEEEEccCCEEEEeec
Confidence            99999998764     2332222223557788999977  89888888888877665543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=2.3e-09  Score=87.51  Aligned_cols=184  Identities=12%  Similarity=0.063  Sum_probs=105.6

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~   80 (240)
                      +..+...+...+|+|+|++|+..+.+   ..|.+|++...   ..+.+...   .+.+....|+|+  |+.|+ +...++
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---~~~~l~~~---~g~~~~~~~SpD--G~~la~~~~~~g  265 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---RREQITNF---EGLNGAPAWSPD--GSKLAFVLSKDG  265 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---CEEEccCC---CCCcCCeEECCC--CCEEEEEEccCC
Confidence            44566678899999999999877644   35888898733   22333222   344557899999  98776 444555


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCc--EEEEEecCcccccceeEEeeeec
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGH--VKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~--v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                        .|.++|+..+       . ...+..+........|+|  +|..++..+. +|.  |.++++.+      .+. ..+..
T Consensus       266 ~~~Iy~~d~~~~-------~-~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~------g~~-~~lt~  328 (430)
T PRK00178        266 NPEIYVMDLASR-------Q-LSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNG------GRA-ERVTF  328 (430)
T ss_pred             CceEEEEECCCC-------C-eEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCC------CCE-EEeec
Confidence              5777777654       2 223333444556788999  8887766553 444  55555544      121 11111


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      .....          ....|+|++.     .|+.....++.  ..|.+||+.++..  ..   +.. ..   ......|+
T Consensus       329 ~~~~~----------~~~~~Spdg~-----~i~~~~~~~~~--~~l~~~dl~tg~~--~~---lt~-~~---~~~~p~~s  382 (430)
T PRK00178        329 VGNYN----------ARPRLSADGK-----TLVMVHRQDGN--FHVAAQDLQRGSV--RI---LTD-TS---LDESPSVA  382 (430)
T ss_pred             CCCCc----------cceEECCCCC-----EEEEEEccCCc--eEEEEEECCCCCE--EE---ccC-CC---CCCCceEC
Confidence            11111          1567999987     66666544200  2467777766432  11   111 11   22345899


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      ||+.
T Consensus       383 pdg~  386 (430)
T PRK00178        383 PNGT  386 (430)
T ss_pred             CCCC
Confidence            9874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.22  E-value=5.1e-10  Score=96.26  Aligned_cols=171  Identities=12%  Similarity=0.135  Sum_probs=118.1

Q ss_pred             cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295           45 SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        45 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  124 (240)
                      .+..+..+..|...+..++.+++ .+.+|++|+.||+|++|+.+...+.+...+...++......+.++...+  ++..+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~--~~~~~ 1113 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG--NGDQF 1113 (1431)
T ss_pred             cceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc--CCCeE
Confidence            46788899999999999998876 2589999999999999999876555455566666665668888999988  89999


Q ss_pred             EEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          125 VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       125 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                      |+++.||.|++.++... +.....+.+..      +....+..+.+..-+|.....   ...|+.+..-     +.|.+|
T Consensus      1114 Av~t~DG~v~~~~id~~-~~~~~~~~~~r------i~n~~~~g~vv~m~a~~~~~~---S~~lvy~T~~-----~~iv~~ 1178 (1431)
T KOG1240|consen 1114 AVSTKDGSVRVLRIDHY-NVSKRVATQVR------IPNLKKDGVVVSMHAFTAIVQ---SHVLVYATDL-----SRIVSW 1178 (1431)
T ss_pred             EEEcCCCeEEEEEcccc-ccccceeeeee------cccccCCCceEEeeccccccc---ceeEEEEEec-----cceEEe
Confidence            99999999999988752 11111111111      111111222222333333222   2366666666     899999


Q ss_pred             EeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      |.+.....|.+...+     ..+.|++++.+|-+
T Consensus      1179 D~r~~~~~w~lk~~~-----~hG~vTSi~idp~~ 1207 (1431)
T KOG1240|consen 1179 DTRMRHDAWRLKNQL-----RHGLVTSIVIDPWC 1207 (1431)
T ss_pred             cchhhhhHHhhhcCc-----cccceeEEEecCCc
Confidence            999988888775443     22389999998865

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=6.9e-09  Score=84.28  Aligned_cols=192  Identities=12%  Similarity=0.090  Sum_probs=106.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC
Q 026295            7 TLDKGTTSSSWNYCGQRLATGST-----DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG   80 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~   80 (240)
                      ...+.....+|||||++|+..+.     +..+.+|++....  ............+.....+|+|+  |+.|+..+ .++
T Consensus       228 ~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~--~g~~~~lt~~~~~~~~~p~wSPD--G~~Laf~s~~~g  303 (428)
T PRK01029        228 ALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA--IGKPRRLLNEAFGTQGNPSFSPD--GTRLVFVSNKDG  303 (428)
T ss_pred             cCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC--CCcceEeecCCCCCcCCeEECCC--CCEEEEEECCCC
Confidence            34445556899999998887653     2234446665321  11222222222234467899999  98777654 467


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeeccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      ...+|.+......    .....+......+....|+|  +|+.|+..+.+   ..|.+||+.+.      +.. .+....
T Consensus       304 ~~~ly~~~~~~~g----~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g------~~~-~Lt~~~  370 (428)
T PRK01029        304 RPRIYIMQIDPEG----QSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATG------RDY-QLTTSP  370 (428)
T ss_pred             CceEEEEECcccc----cceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCC------CeE-EccCCC
Confidence            6666655321100    12233333334567889999  99988776543   36888888762      221 222111


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..+.          ...|+|++.     .|+....+.+.  ..|.++++.++...     .+...   .+.+...+|+|-
T Consensus       371 ~~~~----------~p~wSpDG~-----~L~f~~~~~g~--~~L~~vdl~~g~~~-----~Lt~~---~g~~~~p~Ws~~  425 (428)
T PRK01029        371 ENKE----------SPSWAIDSL-----HLVYSAGNSNE--SELYLISLITKKTR-----KIVIG---SGEKRFPSWGAF  425 (428)
T ss_pred             CCcc----------ceEECCCCC-----EEEEEECCCCC--ceEEEEECCCCCEE-----EeecC---CCcccCceecCC
Confidence            1122          688999986     55544332100  46777777654321     12212   225778899997


Q ss_pred             CCC
Q 026295          238 IGR  240 (240)
Q Consensus       238 ~~~  240 (240)
                      ..|
T Consensus       426 ~~~  428 (428)
T PRK01029        426 PSQ  428 (428)
T ss_pred             CCC
Confidence            643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=2.5e-10  Score=86.91  Aligned_cols=115  Identities=13%  Similarity=0.090  Sum_probs=102.0

Q ss_pred             ceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           11 GTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        11 ~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .++.+.|-+.  ...||++..-+.+|+||...    ..+++..+..-+.++.++...|.  +++++++..-+.+..||++
T Consensus       204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~----qRRPV~~fd~~E~~is~~~l~p~--gn~Iy~gn~~g~l~~FD~r  277 (412)
T KOG3881|consen  204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRH----QRRPVAQFDFLENPISSTGLTPS--GNFIYTGNTKGQLAKFDLR  277 (412)
T ss_pred             eeccceecCCCCCceEEEEecceeEEEecCcc----cCcceeEeccccCcceeeeecCC--CcEEEEecccchhheeccc
Confidence            5678889886  78999999999999999984    34678888877899999999999  9999999999999999998


Q ss_pred             eccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           89 VEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      .+       +.... +++..+.|+++..+|  .+.++++++.|..|+|+|+.+
T Consensus       278 ~~-------kl~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  278 GG-------KLLGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             Cc-------eeeccccCCccCCcceEEEcC--CCceEEeeccceeEEEeeccc
Confidence            87       55555 788889999999998  899999999999999999987

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.16  E-value=1.8e-08  Score=79.99  Aligned_cols=176  Identities=11%  Similarity=0.113  Sum_probs=109.3

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           22 QRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        22 ~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +++ ++-..++.|.|.|..     +.+.+..+......-..+.++|+  |+++++++.|+.|.++|+.+.       +.+
T Consensus         6 ~l~~V~~~~~~~v~viD~~-----t~~~~~~i~~~~~~h~~~~~s~D--gr~~yv~~rdg~vsviD~~~~-------~~v   71 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGA-----TNKVVARIPTGGAPHAGLKFSPD--GRYLYVANRDGTVSVIDLATG-------KVV   71 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETT-----T-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSS-------SEE
T ss_pred             cEEEEEecCCCEEEEEECC-----CCeEEEEEcCCCCceeEEEecCC--CCEEEEEcCCCeEEEEECCcc-------cEE
Confidence            344 455567999999998     66778888764444456789999  999999999999999999877       778


Q ss_pred             EEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          101 KSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                      .+++.. .....+++++  +|+++++++ ..+.+.++|.++      .+++..+...........   ..+..+.-+|..
T Consensus        72 ~~i~~G-~~~~~i~~s~--DG~~~~v~n~~~~~v~v~D~~t------le~v~~I~~~~~~~~~~~---~Rv~aIv~s~~~  139 (369)
T PF02239_consen   72 ATIKVG-GNPRGIAVSP--DGKYVYVANYEPGTVSVIDAET------LEPVKTIPTGGMPVDGPE---SRVAAIVASPGR  139 (369)
T ss_dssp             EEEE-S-SEEEEEEE----TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS------EEEEEE-SSS
T ss_pred             EEEecC-CCcceEEEcC--CCCEEEEEecCCCceeEecccc------ccceeecccccccccccC---CCceeEEecCCC
Confidence            888754 4467899999  999888765 689999999987      666666654322110000   111155566776


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .     .+++.-.|.    +.|.+-|+......  ....+.    ......+..|+|++
T Consensus       140 ~-----~fVv~lkd~----~~I~vVdy~d~~~~--~~~~i~----~g~~~~D~~~dpdg  183 (369)
T PF02239_consen  140 P-----EFVVNLKDT----GEIWVVDYSDPKNL--KVTTIK----VGRFPHDGGFDPDG  183 (369)
T ss_dssp             S-----EEEEEETTT----TEEEEEETTTSSCE--EEEEEE------TTEEEEEE-TTS
T ss_pred             C-----EEEEEEccC----CeEEEEEecccccc--ceeeec----ccccccccccCccc
Confidence            5     566665543    77777676654322  222222    22367788999886

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.15  E-value=6.8e-09  Score=84.88  Aligned_cols=157  Identities=13%  Similarity=0.114  Sum_probs=90.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCe-
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTD-G--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGS-   81 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d-~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~-   81 (240)
                      .+...+.+.+|+|+|++|+..+.+ +  .|.+||+...   ..+.+..+.   +......|+|+  |+.|+. ...++. 
T Consensus       215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---~~~~lt~~~---g~~~~~~wSPD--G~~La~~~~~~g~~  286 (448)
T PRK04792        215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---VREKVTSFP---GINGAPRFSPD--GKKLALVLSKDGQP  286 (448)
T ss_pred             cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---CeEEecCCC---CCcCCeeECCC--CCEEEEEEeCCCCe
Confidence            344567789999999988876543 3  5778887632   223333333   33447899999  887664 566675 


Q ss_pred             -EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEE--EEecCcccccceeEEeeeeccc
Q 026295           82 -LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKV--YELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        82 -v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~i--w~~~~~~~~~~~~~~~~~~~~~  157 (240)
                       |.++|+..+       + ...+..+........|+|  ++.+++..+. ++...+  +|+.+      .+. ..+....
T Consensus       287 ~Iy~~dl~tg-------~-~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~------g~~-~~Lt~~g  349 (448)
T PRK04792        287 EIYVVDIATK-------A-LTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLAS------GKV-SRLTFEG  349 (448)
T ss_pred             EEEEEECCCC-------C-eEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCC------CCE-EEEecCC
Confidence             555566543       2 233333444567789999  9987766553 444444  45543      121 1121111


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      ....          ..+|+|++.     +|+..+.++    +..+||-++
T Consensus       350 ~~~~----------~~~~SpDG~-----~l~~~~~~~----g~~~I~~~d  380 (448)
T PRK04792        350 EQNL----------GGSITPDGR-----SMIMVNRTN----GKFNIARQD  380 (448)
T ss_pred             CCCc----------CeeECCCCC-----EEEEEEecC----CceEEEEEE
Confidence            1111          568999987     566655442    555565443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.14  E-value=5.3e-07  Score=71.46  Aligned_cols=202  Identities=14%  Similarity=0.115  Sum_probs=122.9

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeec-----------CccEEEEEEcCCCCCCEEEEEec
Q 026295           11 GTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVH-----------AGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      .-..++++|++++|+++.. +|.|.++++...+  ..........|           ....+++.|+|+  ++++++...
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g--~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pd--g~~v~v~dl  163 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG--SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPD--GRFVYVPDL  163 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTS--EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TT--SSEEEEEET
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCc--ccceeeeecccCCCCCcccccccccceeEEECCC--CCEEEEEec
Confidence            4457899999999999874 7999999998642  22222111111           234789999999  998877644


Q ss_pred             -CCeEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeec
Q 026295           79 -DGSLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        79 -d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                       ...|.+|++.....   .+.....+. .....-+.+.|+|  +++++.+.+ .+++|.++++....  ...+..+.+..
T Consensus       164 G~D~v~~~~~~~~~~---~l~~~~~~~~~~G~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~~~~--g~~~~~~~~~~  236 (345)
T PF10282_consen  164 GADRVYVYDIDDDTG---KLTPVDSIKVPPGSGPRHLAFSP--DGKYAYVVNELSNTVSVFDYDPSD--GSLTEIQTIST  236 (345)
T ss_dssp             TTTEEEEEEE-TTS----TEEEEEEEECSTTSSEEEEEE-T--TSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEES
T ss_pred             CCCEEEEEEEeCCCc---eEEEeeccccccCCCCcEEEEcC--CcCEEEEecCCCCcEEEEeecccC--CceeEEEEeee
Confidence             34799999875421   122333333 2346678999999  888765554 67889999988311  12344444332


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      ......  +.  .....+.++|++.     +|.++....    +.|.+|+++...........+...   ....+.++++
T Consensus       237 ~~~~~~--~~--~~~~~i~ispdg~-----~lyvsnr~~----~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s  300 (345)
T PF10282_consen  237 LPEGFT--GE--NAPAEIAISPDGR-----FLYVSNRGS----NSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFS  300 (345)
T ss_dssp             CETTSC--SS--SSEEEEEE-TTSS-----EEEEEECTT----TEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-
T ss_pred             cccccc--cc--CCceeEEEecCCC-----EEEEEeccC----CEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEe
Confidence            211111  11  1223899999997     666666544    899999996554444455544432   2257999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      |++.
T Consensus       301 ~~g~  304 (345)
T PF10282_consen  301 PDGR  304 (345)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            9874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.14  E-value=1.8e-10  Score=86.06  Aligned_cols=103  Identities=12%  Similarity=0.144  Sum_probs=77.7

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v~iwd~   87 (240)
                      +.|.-+.|..+..+++++ ..|+.|.+|++..+   .+  ...+..-..++..++|+|+  | .+|.+...|-.|.+|.+
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---ew--~ckIdeg~agls~~~WSPd--grhiL~tseF~lriTVWSL  121 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---EW--YCKIDEGQAGLSSISWSPD--GRHILLTSEFDLRITVWSL  121 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecc---ee--EEEeccCCCcceeeeECCC--cceEeeeecceeEEEEEEe
Confidence            456678898888766654 67789999999854   33  3455555678999999999  8 56667777889999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      .+.        ...-++-....+..++|+|  +|++.+.+++
T Consensus       122 ~t~--------~~~~~~~pK~~~kg~~f~~--dg~f~ai~sR  153 (447)
T KOG4497|consen  122 NTQ--------KGYLLPHPKTNVKGYAFHP--DGQFCAILSR  153 (447)
T ss_pred             ccc--------eeEEecccccCceeEEECC--CCceeeeeec
Confidence            873        4444455556778899988  9998887764

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=1.9e-08  Score=82.19  Aligned_cols=159  Identities=12%  Similarity=0.136  Sum_probs=96.4

Q ss_pred             CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---CCeEEEEEeeeccCCCcccEEEEEeeecc
Q 026295           31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---DGSLLLWEEIVEDAQPLQWKLCKSFESTS  107 (240)
Q Consensus        31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~  107 (240)
                      ..|.++|....      ....+..|...+....|+|+  |+.|+..+.   +..|.+||+..+       .. ..+....
T Consensus       182 ~~l~~~d~dg~------~~~~lt~~~~~v~~p~wSpD--G~~lay~s~~~g~~~i~~~dl~~g-------~~-~~l~~~~  245 (435)
T PRK05137        182 KRLAIMDQDGA------NVRYLTDGSSLVLTPRFSPN--RQEITYMSYANGRPRVYLLDLETG-------QR-ELVGNFP  245 (435)
T ss_pred             eEEEEECCCCC------CcEEEecCCCCeEeeEECCC--CCEEEEEEecCCCCEEEEEECCCC-------cE-EEeecCC
Confidence            36778887532      22344467788999999999  998877653   458999999765       22 2333344


Q ss_pred             ccEEeEEEeecCCCcEEE-EEeCCCc--EEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCC
Q 026295          108 TQVLDVQFGVSSTSLKLV-AAYSDGH--VKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQG  184 (240)
Q Consensus       108 ~~v~~~~~~~~~~~~~l~-~~~~dg~--v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~  184 (240)
                      ..+....|+|  +|..|+ +.+.++.  |.+||+.+      .+. ..+..+.....          ...|+|++.    
T Consensus       246 g~~~~~~~SP--DG~~la~~~~~~g~~~Iy~~d~~~------~~~-~~Lt~~~~~~~----------~~~~spDG~----  302 (435)
T PRK05137        246 GMTFAPRFSP--DGRKVVMSLSQGGNTDIYTMDLRS------GTT-TRLTDSPAIDT----------SPSYSPDGS----  302 (435)
T ss_pred             CcccCcEECC--CCCEEEEEEecCCCceEEEEECCC------Cce-EEccCCCCccC----------ceeEcCCCC----
Confidence            5667889999  998765 5555665  55567654      222 23333222222          678999987    


Q ss_pred             ceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          185 SSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       185 ~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       .|+..+..++.  ..|+++++.++..     ..+..   +...+....|+||+.
T Consensus       303 -~i~f~s~~~g~--~~Iy~~d~~g~~~-----~~lt~---~~~~~~~~~~SpdG~  346 (435)
T PRK05137        303 -QIVFESDRSGS--PQLYVMNADGSNP-----RRISF---GGGRYSTPVWSPRGD  346 (435)
T ss_pred             -EEEEEECCCCC--CeEEEEECCCCCe-----EEeec---CCCcccCeEECCCCC
Confidence             67766643200  2566666544321     11221   123567788999984

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.10  E-value=2.4e-10  Score=91.06  Aligned_cols=174  Identities=11%  Similarity=0.203  Sum_probs=119.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+|.+.|+.++--.+.+-+++++.|++|++|.+...+.+  +-.+..++..|+.+|+++.|-.+  -++++++  |+-|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~--lr~i~Sc--D~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD--LRSIASC--DGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec--cceeeec--cCcc
Confidence            5678888888876667788999999999999999754322  44577788899999999999877  6677665  8999


Q ss_pred             EEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEE-EeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVA-AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ++||.--+       .++..+..  ..+.+..+..-|+.+..++.+ ++...+|+++|.+..      +...+++....+
T Consensus       807 HlWDPFig-------r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsc------e~~~E~kVcna~  873 (1034)
T KOG4190|consen  807 HLWDPFIG-------RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSC------EWTCELKVCNAP  873 (1034)
T ss_pred             eeeccccc-------chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccc------cceeeEEeccCC
Confidence            99997554       44433321  223444455545323444444 478889999999973      333333322111


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .+     ...+.+++..|.++     .++.|-+.     |.|-+.|.+++.
T Consensus       874 ~P-----na~~R~iaVa~~GN-----~lAa~LSn-----Gci~~LDaR~G~  909 (1034)
T KOG4190|consen  874 GP-----NALTRAIAVADKGN-----KLAAALSN-----GCIAILDARNGK  909 (1034)
T ss_pred             CC-----chheeEEEeccCcc-----hhhHHhcC-----CcEEEEecCCCc
Confidence            00     01123788888887     79999888     999999998875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.09  E-value=3e-09  Score=81.43  Aligned_cols=161  Identities=13%  Similarity=0.159  Sum_probs=104.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC---eEEEEEe
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG---SLLLWEE   87 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~iwd~   87 (240)
                      ++..+..++.+++||++..+....++++..+.. ..+++.....- ..-+.+.|...  ......+..-|   .+.+|..
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~-~~~~ai~~~~~--~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP-KRPTAISFIRE--DTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc-cCcceeeeeec--cceEEEEeecCCceeeeeecc
Confidence            344556788999999999988888888875532 23443333321 22233333333  33333333333   4444444


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceeeccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVTMFRKA  166 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~  166 (240)
                      ..        .+...+-+|-+-+..++|+|  |+++++++..|..|++-.....      -.+..+ -+|..-|+     
T Consensus       140 ~~--------~~~~~~lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa~------f~IesfclGH~eFVS-----  198 (390)
T KOG3914|consen  140 DS--------GRCEPILGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPAT------FVIESFCLGHKEFVS-----  198 (390)
T ss_pred             cc--------cCcchhhhhhhhhheeeecC--CCCEEEEecCCceEEEEecCcc------cchhhhccccHhhee-----
Confidence            32        23344557889999999999  9999999999999998776542      222233 25666666     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                           .++.-++.      .|++|+.|     ++|++||+.++...
T Consensus       199 -----~isl~~~~------~LlS~sGD-----~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  199 -----TISLTDNY------LLLSGSGD-----KTLRLWDITSGKLL  228 (390)
T ss_pred             -----eeeeccCc------eeeecCCC-----CcEEEEecccCCcc
Confidence                 77776665      58999998     99999999987654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.08  E-value=8.8e-07  Score=70.22  Aligned_cols=201  Identities=10%  Similarity=0.086  Sum_probs=123.2

Q ss_pred             ceEEEEECCCCCEEEEEeC----CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEE
Q 026295           11 GTTSSSWNYCGQRLATGST----DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLW   85 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~----d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iw   85 (240)
                      ....++++|++++|.+..+    ++.|..|++.... +..+.+............++++|+  +.+++++. .+|.|.++
T Consensus        38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~--g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPD--GRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred             CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecC--CCEEEEEEccCCeEEEE
Confidence            4456889999999999877    4689999887541 155666666544556678999999  99888876 48899999


Q ss_pred             EeeeccCCCcccEEEEEee----------eccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeee
Q 026295           86 EEIVEDAQPLQWKLCKSFE----------STSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      ++.....   --.....+.          .......++.|+|  +++++++.. ....|.+|++......  ......+.
T Consensus       115 ~l~~~g~---l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~--l~~~~~~~  187 (345)
T PF10282_consen  115 PLDDDGS---LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGK--LTPVDSIK  187 (345)
T ss_dssp             EECTTSE---EEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-T--EEEEEEEE
T ss_pred             EccCCcc---cceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCce--EEEeeccc
Confidence            9975310   001111121          1234567899999  999877764 3347999998753211  12222222


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCC-C--CCCceEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPE-D--RSDEVYA  231 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~-~--h~~~v~~  231 (240)
                      ..         ..+....+.|+|++.     ++.+....+    +.|.+|++......+.....+.... +  .......
T Consensus       188 ~~---------~G~GPRh~~f~pdg~-----~~Yv~~e~s----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  188 VP---------PGSGPRHLAFSPDGK-----YAYVVNELS----NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             CS---------TTSSEEEEEE-TTSS-----EEEEEETTT----TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             cc---------cCCCCcEEEEcCCcC-----EEEEecCCC----CcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            21         112234899999987     565555544    9999999994443444443333221 1  1226788


Q ss_pred             EEEecCCC
Q 026295          232 VAWALNIG  239 (240)
Q Consensus       232 v~~sp~~~  239 (240)
                      |+++||+.
T Consensus       250 i~ispdg~  257 (345)
T PF10282_consen  250 IAISPDGR  257 (345)
T ss_dssp             EEE-TTSS
T ss_pred             EEEecCCC
Confidence            99999973

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.08  E-value=5.1e-08  Score=77.49  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeecc
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVED   91 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~   91 (240)
                      ..+.|+|||+++.+++.||.|.++|+.     +.+.+.+++. ......++++++  |++++++. ..+.+.++|.++. 
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~-----~~~~v~~i~~-G~~~~~i~~s~D--G~~~~v~n~~~~~v~v~D~~tl-  110 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLA-----TGKVVATIKV-GGNPRGIAVSPD--GKYVYVANYEPGTVSVIDAETL-  110 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETT-----SSSEEEEEE--SSEEEEEEE--T--TTEEEEEEEETTEEEEEETTT--
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECC-----cccEEEEEec-CCCcceEEEcCC--CCEEEEEecCCCceeEeccccc-
Confidence            457899999999999999999999998     5567777775 345678999999  99888765 5889999998766 


Q ss_pred             CCCcccEEEEEeeec-------cccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           92 AQPLQWKLCKSFEST-------STQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        92 ~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                            ++++.+...       ...+..+..+|  ....++.. -..+.|.+-|.....+    .....+... ....  
T Consensus       111 ------e~v~~I~~~~~~~~~~~~Rv~aIv~s~--~~~~fVv~lkd~~~I~vVdy~d~~~----~~~~~i~~g-~~~~--  175 (369)
T PF02239_consen  111 ------EPVKTIPTGGMPVDGPESRVAAIVASP--GRPEFVVNLKDTGEIWVVDYSDPKN----LKVTTIKVG-RFPH--  175 (369)
T ss_dssp             -------EEEEEE--EE-TTTS---EEEEEE-S--SSSEEEEEETTTTEEEEEETTTSSC----EEEEEEE---TTEE--
T ss_pred             ------cceeecccccccccccCCCceeEEecC--CCCEEEEEEccCCeEEEEEeccccc----cceeeeccc-cccc--
Confidence                  677766532       34566777777  66644444 4457777777665311    111222221 1122  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                              ...|+|++.     +++++...+    +.|-++|..+.
T Consensus       176 --------D~~~dpdgr-----y~~va~~~s----n~i~viD~~~~  204 (369)
T PF02239_consen  176 --------DGGFDPDGR-----YFLVAANGS----NKIAVIDTKTG  204 (369)
T ss_dssp             --------EEEE-TTSS-----EEEEEEGGG----TEEEEEETTTT
T ss_pred             --------ccccCcccc-----eeeeccccc----ceeEEEeeccc
Confidence                    788999986     666654333    88999987654

...

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=2.8e-08  Score=80.79  Aligned_cols=189  Identities=13%  Similarity=0.158  Sum_probs=102.6

Q ss_pred             ccceEEEEECCCCCEEE---EEeCCCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC--
Q 026295            9 DKGTTSSSWNYCGQRLA---TGSTDGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG--   80 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~---~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~--   80 (240)
                      ...+.+=+|+|||+.++   +...++.  |.+.++...   ..+.+..+.   +......|+|+  |+.|+..+. +|  
T Consensus       184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---~~~~lt~~~---g~~~~p~wSPD--G~~Laf~s~~~g~~  255 (428)
T PRK01029        184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---AGKKILALQ---GNQLMPTFSPR--KKLLAFISDRYGNP  255 (428)
T ss_pred             CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---CceEeecCC---CCccceEECCC--CCEEEEEECCCCCc
Confidence            34456679999997532   4444444  666666533   333444343   34456899999  988776542 23  


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                        .+.+|++..+...    ...+............+|+|  +|..|+..+ .+|...+|.+.....   ......+....
T Consensus       256 di~~~~~~~~~g~~g----~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~---g~~~~~lt~~~  326 (428)
T PRK01029        256 DLFIQSFSLETGAIG----KPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPE---GQSPRLLTKKY  326 (428)
T ss_pred             ceeEEEeecccCCCC----cceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECccc---ccceEEeccCC
Confidence              3444665432110    22222222223345789999  999777665 467666765532110   11112222221


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..+.          ...|+|++.     .|+..+.+++.  ..|.+||+.++...     .+..   ....+....|+||
T Consensus       327 ~~~~----------~p~wSPDG~-----~Laf~~~~~g~--~~I~v~dl~~g~~~-----~Lt~---~~~~~~~p~wSpD  381 (428)
T PRK01029        327 RNSS----------CPAWSPDGK-----KIAFCSVIKGV--RQICVYDLATGRDY-----QLTT---SPENKESPSWAID  381 (428)
T ss_pred             CCcc----------ceeECCCCC-----EEEEEEcCCCC--cEEEEEECCCCCeE-----EccC---CCCCccceEECCC
Confidence            2222          678999997     67666543211  46888888765422     1211   1125677899999


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       382 G~  383 (428)
T PRK01029        382 SL  383 (428)
T ss_pred             CC
Confidence            74

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.07  E-value=4.3e-10  Score=84.48  Aligned_cols=89  Identities=13%  Similarity=0.296  Sum_probs=73.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ++.+|.+.+.+++|.+..++|.+|..|..+.+||+-..   + .....+.+|...|..+++.+.  -..+.+++.||.|.
T Consensus       192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~---~-g~~~el~gh~~kV~~l~~~~~--t~~l~S~~edg~i~  265 (404)
T KOG1409|consen  192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR---K-GTAYELQGHNDKVQALSYAQH--TRQLISCGEDGGIV  265 (404)
T ss_pred             EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC---c-ceeeeeccchhhhhhhhhhhh--heeeeeccCCCeEE
Confidence            46789999999999999999999999999999999754   2 345567789999999998877  78899999999999


Q ss_pred             EEEeeeccCCCcccE
Q 026295           84 LWEEIVEDAQPLQWK   98 (240)
Q Consensus        84 iwd~~~~~~~~~~~~   98 (240)
                      +|+......+.++|.
T Consensus       266 ~w~mn~~r~etpewl  280 (404)
T KOG1409|consen  266 VWNMNVKRVETPEWL  280 (404)
T ss_pred             EEeccceeecCcccc
Confidence            999876544334443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.05  E-value=7.7e-10  Score=83.24  Aligned_cols=131  Identities=10%  Similarity=0.098  Sum_probs=100.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .+.|.++.|...++++..|..+|.|..+|+....++...+...+. |...|++++.-.. .+++|++.+.+|+|++||++
T Consensus       252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQILQF-SQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhhcc-ccceEeeccCcCceeEeeeh
Confidence            357888899999999999999999999999866555555655554 8899999887552 27888899999999999998


Q ss_pred             eccCCCcccEE---EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           89 VEDAQPLQWKL---CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        89 ~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      .-       ++   +.++.+|...-.-+-++-++....+++++.|...+||.+..      +.+..++.
T Consensus       330 ~~-------K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~------ghLl~tip  385 (425)
T KOG2695|consen  330 AT-------KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS------GHLLCTIP  385 (425)
T ss_pred             hh-------hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc------CceeeccC
Confidence            75       55   78888875554444444333666788899999999999987      55555543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.04  E-value=4.6e-07  Score=68.98  Aligned_cols=198  Identities=11%  Similarity=0.059  Sum_probs=124.7

Q ss_pred             EEEEECCCCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeeecCcc----------EEEEEEcCCCCCCEEEEEecC-C
Q 026295           13 TSSSWNYCGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKVHAGA----------ILKVVWVPPEFGDAVACICSD-G   80 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~~l~s~~~d-~   80 (240)
                      .-++++++|++|+++... |.|.++-+...+  .......+..|.+.          +....+.|+  ++++++...- -
T Consensus        92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG--~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~--~~~l~v~DLG~D  167 (346)
T COG2706          92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADG--SLQPVVQVVKHTGSGPHERQESPHVHSANFTPD--GRYLVVPDLGTD  167 (346)
T ss_pred             eEEEECCCCCEEEEEEccCceEEEEEcccCC--ccccceeeeecCCCCCCccccCCccceeeeCCC--CCEEEEeecCCc
Confidence            678999999999999765 789999987543  22223223345555          889999999  9988887542 2


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .|.+|++..+.-   .-.....+ .....-+.|.|+|  ++++..+.+ .+++|.+|.....  ..+.+.++.+......
T Consensus       168 ri~~y~~~dg~L---~~~~~~~v-~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~--~g~~~~lQ~i~tlP~d  239 (346)
T COG2706         168 RIFLYDLDDGKL---TPADPAEV-KPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPA--VGKFEELQTIDTLPED  239 (346)
T ss_pred             eEEEEEcccCcc---cccccccc-CCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCC--CceEEEeeeeccCccc
Confidence            688999874411   00111111 3456678999999  998765544 6899999998763  3334555544433222


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ..  +...+  .++..+|++.     +|.++....    ..|-+|.+.....+........   .+...-+++.|+|++
T Consensus       240 F~--g~~~~--aaIhis~dGr-----FLYasNRg~----dsI~~f~V~~~~g~L~~~~~~~---teg~~PR~F~i~~~g  302 (346)
T COG2706         240 FT--GTNWA--AAIHISPDGR-----FLYASNRGH----DSIAVFSVDPDGGKLELVGITP---TEGQFPRDFNINPSG  302 (346)
T ss_pred             cC--CCCce--eEEEECCCCC-----EEEEecCCC----CeEEEEEEcCCCCEEEEEEEec---cCCcCCccceeCCCC
Confidence            21  11222  2788999997     666665433    6888998877654433333222   122345777777765

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.02  E-value=2.8e-09  Score=55.93  Aligned_cols=39  Identities=28%  Similarity=0.624  Sum_probs=36.9

Q ss_pred             EEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295           46 FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus        46 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      ++++.++.+|.+.|.+++|+|+  +.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~--~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPD--GNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETT--SSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecc--cccceeeCCCCEEEEEC
Confidence            4678899999999999999999  99999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.01  E-value=1.7e-08  Score=83.70  Aligned_cols=164  Identities=18%  Similarity=0.173  Sum_probs=111.9

Q ss_pred             hcccccceEEEEECCC-------------CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC---C
Q 026295            5 VATLDKGTTSSSWNYC-------------GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP---E   68 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~-------------~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~   68 (240)
                      +-+|.++|.-..+...             |.++++|+.||+|.|..+.     +.+...++.- ..++.+++++|+   +
T Consensus        54 ~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~-----~~~~~~~~df-~rpiksial~Pd~~~~  127 (846)
T KOG2066|consen   54 LGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLF-----TDDEITQYDF-KRPIKSIALHPDFSRQ  127 (846)
T ss_pred             eccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeecc-----CCccceeEec-CCcceeEEeccchhhh
Confidence            4457777666655544             9999999999999999887     3344444443 478999999997   3


Q ss_pred             CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee
Q 026295           69 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        69 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                      ...++++|+..| +.++.-.--..     +.........+.|.++.|    .|.++|=++.+| |++||+.+.      +
T Consensus       128 ~sk~fv~GG~ag-lvL~er~wlgn-----k~~v~l~~~eG~I~~i~W----~g~lIAWand~G-v~vyd~~~~------~  190 (846)
T KOG2066|consen  128 QSKQFVSGGMAG-LVLSERNWLGN-----KDSVVLSEGEGPIHSIKW----RGNLIAWANDDG-VKVYDTPTR------Q  190 (846)
T ss_pred             hhhheeecCcce-EEEehhhhhcC-----ccceeeecCccceEEEEe----cCcEEEEecCCC-cEEEecccc------c
Confidence            456799999888 66665322110     111134556789999999    788888888887 899999873      3


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      .+..+......+++ ....|   .+.|.+..      .|+.|..|      +|+|..++
T Consensus       191 ~l~~i~~p~~~~R~-e~fpp---hl~W~~~~------~LVIGW~d------~v~i~~I~  233 (846)
T KOG2066|consen  191 RLTNIPPPSQSVRP-ELFPP---HLHWQDED------RLVIGWGD------SVKICSIK  233 (846)
T ss_pred             eeeccCCCCCCCCc-ccCCC---ceEecCCC------eEEEecCC------eEEEEEEe
Confidence            33333322222221 11233   78999988      59999884      89999887

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=8e-08  Score=76.74  Aligned_cols=153  Identities=19%  Similarity=0.336  Sum_probs=100.4

Q ss_pred             EEEECCCCC-EEEE--EeCCC---------cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE--ecC
Q 026295           14 SSSWNYCGQ-RLAT--GSTDG---------TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI--CSD   79 (240)
Q Consensus        14 ~~~~s~~~~-~l~~--~~~d~---------~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~d   79 (240)
                      .+.|++-|. +|+.  ..-|.         ++++.++..     ..+.-.+. -.++|++++|+|.  +..|+.+  -+-
T Consensus       222 qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-----~s~~V~L~-k~GPVhdv~W~~s--~~EF~VvyGfMP  293 (566)
T KOG2315|consen  222 QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-----ESVSVPLL-KEGPVHDVTWSPS--GREFAVVYGFMP  293 (566)
T ss_pred             EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-----ceEEEecC-CCCCceEEEECCC--CCEEEEEEeccc
Confidence            466777664 3333  33333         355555541     12333333 3789999999999  8766654  345


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeecc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      -.+.|+|++.        .++..+.  +++-.++-|+|  .|++++.++.+   |.+-|||..+      .+++..+...
T Consensus       294 Akvtifnlr~--------~~v~df~--egpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n------~K~i~~~~a~  355 (566)
T KOG2315|consen  294 AKVTIFNLRG--------KPVFDFP--EGPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPN------RKLIAKFKAA  355 (566)
T ss_pred             ceEEEEcCCC--------CEeEeCC--CCCccceEECC--CCCEEEEeecCCCCCceEEEeccc------hhhccccccC
Confidence            5899999975        5666654  35667789999  99998887744   8899999987      5666555443


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecC-CCCCCCeEEEEEeecC
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS-DTPQLNSSKVWEFDEA  209 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d-d~~~~~~i~iw~~~~~  209 (240)
                      ...            -+.|+|++.     +|+|+... --+-++.++||++...
T Consensus       356 ~tt------------~~eW~PdGe-----~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  356 NTT------------VFEWSPDGE-----YFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             Cce------------EEEEcCCCc-----EEEEEeccccEEecCCeEEEEecCc
Confidence            221            467999998     89888753 0000088999998753

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.98  E-value=3.5e-09  Score=55.53  Aligned_cols=39  Identities=21%  Similarity=0.395  Sum_probs=37.0

Q ss_pred             cEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295           97 WKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE  137 (240)
Q Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~  137 (240)
                      |+++..+.+|...|.+++|+|  ++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~--~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP--DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET--TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec--ccccceeeCCCCEEEEEC
Confidence            478899999999999999999  899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.95  E-value=9.6e-10  Score=90.29  Aligned_cols=124  Identities=19%  Similarity=0.241  Sum_probs=97.8

Q ss_pred             hcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +-+|..+|+.+-|+|+. ..||+++.|..+..||+..+    ..++..+.........++|+-. .+..+++ +....|.
T Consensus       110 lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp----~~p~ys~~~w~s~asqVkwnyk-~p~vlas-shg~~i~  183 (1081)
T KOG0309|consen  110 LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP----HRPFYSTSSWRSAASQVKWNYK-DPNVLAS-SHGNDIF  183 (1081)
T ss_pred             EecCccceeccccCCCCCcceeeccccccceeeeccCC----CcceeeeecccccCceeeeccc-Ccchhhh-ccCCceE
Confidence            45688899999999976 68999999999999999853    3556666655667788999865 3555554 4566899


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      +||++.+.      .++..+++|...|..++|.....+ .+.+++.||+|++||....
T Consensus       184 vwd~r~gs------~pl~s~K~~vs~vn~~~fnr~~~s-~~~s~~~d~tvkfw~y~kS  234 (1081)
T KOG0309|consen  184 VWDLRKGS------TPLCSLKGHVSSVNSIDFNRFKYS-EIMSSSNDGTVKFWDYSKS  234 (1081)
T ss_pred             EEeccCCC------cceEEecccceeeehHHHhhhhhh-hhcccCCCCceeeeccccc
Confidence            99998764      678888889999999999653233 4889999999999998764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.93  E-value=1.8e-07  Score=76.09  Aligned_cols=147  Identities=14%  Similarity=0.169  Sum_probs=89.1

Q ss_pred             cccccceEEEEECCCCCEEEE-EeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC-
Q 026295            6 ATLDKGTTSSSWNYCGQRLAT-GSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG-   80 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~-~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~-   80 (240)
                      ..+.+.+.+++|+|+|+.|+. .+.++  .|.+|++...     . ...+..+........|+|+  |+.|+..+. ++ 
T Consensus       230 ~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~-----~-~~~l~~~~~~~~~~~~s~d--g~~l~~~s~~~g~  301 (417)
T TIGR02800       230 ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGK-----Q-LTRLTNGPGIDTEPSWSPD--GKSIAFTSDRGGS  301 (417)
T ss_pred             ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCC-----C-EEECCCCCCCCCCEEECCC--CCEEEEEECCCCC
Confidence            345556778999999987764 44444  4777887632     2 2223334444557789998  887766543 34 


Q ss_pred             -eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecc
Q 026295           81 -SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        81 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                       .|.++++..+       + ...+......+....|+|  ++.+++..+.++   .|.+||+.+.      .. ..+...
T Consensus       302 ~~iy~~d~~~~-------~-~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~------~~-~~l~~~  364 (417)
T TIGR02800       302 PQIYMMDADGG-------E-VRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGG------GE-RVLTDT  364 (417)
T ss_pred             ceEEEEECCCC-------C-EEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCC------Ce-EEccCC
Confidence             4555665433       2 223333345567789999  999888888765   6778887651      11 111111


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                      . ...          ...|+|++.     .|+....+
T Consensus       365 ~-~~~----------~p~~spdg~-----~l~~~~~~  385 (417)
T TIGR02800       365 G-LDE----------SPSFAPNGR-----MILYATTR  385 (417)
T ss_pred             C-CCC----------CceECCCCC-----EEEEEEeC
Confidence            1 111          567999987     67666665

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.91  E-value=2.3e-07  Score=67.99  Aligned_cols=186  Identities=10%  Similarity=0.041  Sum_probs=114.0

Q ss_pred             EEEECC-----CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           14 SSSWNY-----CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        14 ~~~~s~-----~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .+.|-|     ...+||.|+..|...+|.+..+.    ........|...|.-+.=.-+. .-.+..++.|.++++.++.
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~----~h~~~cd~snn~v~~~~r~cd~-~~~~~i~sndht~k~~~~~  146 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND----GHLYQCDVSNNDVTLVKRYCDL-KFPLNIASNDHTGKTMVVS  146 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcc----cceeeecccccchhhhhhhccc-ccceeeccCCcceeEEEEe
Confidence            345555     23589999999999999987331    1222223343333222211111 1224556778899999887


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      .+..     +....+..  -.+.+++++|  ++.++++.+....|-.|.+...     .+.+..+....        ..-
T Consensus       147 ~~s~-----~~~~h~~~--~~~ns~~~sn--d~~~~~~Vgds~~Vf~y~id~~-----sey~~~~~~a~--------t~D  204 (344)
T KOG4532|consen  147 GDSN-----KFAVHNQN--LTQNSLHYSN--DPSWGSSVGDSRRVFRYAIDDE-----SEYIENIYEAP--------TSD  204 (344)
T ss_pred             cCcc-----cceeeccc--cceeeeEEcC--CCceEEEecCCCcceEEEeCCc-----cceeeeeEecc--------cCC
Confidence            5421     21111111  2378889998  9999999999999999988753     12221111110        001


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ...+.+|+....     .+|+++.|     |++.|||++..........  .....|.++++.+.|+|-+
T Consensus       205 ~gF~~S~s~~~~-----~FAv~~Qd-----g~~~I~DVR~~~tpm~~~s--strp~hnGa~R~c~Fsl~g  262 (344)
T KOG4532|consen  205 HGFYNSFSENDL-----QFAVVFQD-----GTCAIYDVRNMATPMAEIS--STRPHHNGAFRVCRFSLYG  262 (344)
T ss_pred             CceeeeeccCcc-----eEEEEecC-----CcEEEEEecccccchhhhc--ccCCCCCCceEEEEecCCC
Confidence            123788998877     89999999     9999999987543332211  1223478899999999854

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.91  E-value=2.8e-07  Score=75.37  Aligned_cols=179  Identities=14%  Similarity=0.147  Sum_probs=98.0

Q ss_pred             cccceEEEEECCCCCEEEE-EeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCe--
Q 026295            8 LDKGTTSSSWNYCGQRLAT-GSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGS--   81 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~-~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~--   81 (240)
                      ..+.+...+|+|+|++|+. .+.++  .|.++|+...     +. ..+..+........|+|+  |+.++..+ .++.  
T Consensus       241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~-----~~-~~lt~~~~~~~~~~~spD--g~~i~f~s~~~g~~~  312 (430)
T PRK00178        241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASR-----QL-SRVTNHPAIDTEPFWGKD--GRTLYFTSDRGGKPQ  312 (430)
T ss_pred             CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCC-----Ce-EEcccCCCCcCCeEECCC--CCEEEEEECCCCCce
Confidence            3344557899999998874 44555  5777788632     22 223344455667899999  88766554 3444  


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-C--cEEEEEecCcccccceeEEeeeecccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-G--HVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g--~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      |.++++..+       +.. .+...........|+|  +|.+++..+.+ +  .|.++|+.+.      +. ..+... .
T Consensus       313 iy~~d~~~g-------~~~-~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg------~~-~~lt~~-~  374 (430)
T PRK00178        313 IYKVNVNGG-------RAE-RVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRG------SV-RILTDT-S  374 (430)
T ss_pred             EEEEECCCC-------CEE-EeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCC------CE-EEccCC-C
Confidence            555555443       211 1111112334578999  89888776643 3  4677787652      21 112111 0


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ...          ...|+|++.     .++..+.++    +.-+||-++.....   ...+..   +.+.+...+|+|-
T Consensus       375 ~~~----------~p~~spdg~-----~i~~~~~~~----g~~~l~~~~~~g~~---~~~l~~---~~g~~~~p~ws~~  428 (430)
T PRK00178        375 LDE----------SPSVAPNGT-----MLIYATRQQ----GRGVLMLVSINGRV---RLPLPT---AQGEVREPSWSPY  428 (430)
T ss_pred             CCC----------CceECCCCC-----EEEEEEecC----CceEEEEEECCCCc---eEECcC---CCCCcCCCccCCC
Confidence            111          467999987     565555442    44444444332211   112222   2236788899984

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.89  E-value=2.3e-06  Score=63.37  Aligned_cols=179  Identities=13%  Similarity=0.117  Sum_probs=106.7

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe---Eee-ecCccEEEEEEcCCCC----CCEEEEEecCCeEE
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNL---KTK-VHAGAILKVVWVPPEF----GDAVACICSDGSLL   83 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~~~-~h~~~v~~~~~~~~~~----~~~l~s~~~d~~v~   83 (240)
                      =+.++||||+.+||.+...|+|++||+.+.   ....+.   .+. .-...|..+.|.+...    ...|+....+|.++
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~---~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~  122 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS---ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR  122 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccc---eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence            357999999999999999999999999743   111110   010 1234577777755421    22466667788888


Q ss_pred             EEEeeeccCCCcccEEEEEeee---ccccEEeEEEeecCCCcEEEEEeC-CC----------cEEEEEecCcccccceeE
Q 026295           84 LWEEIVEDAQPLQWKLCKSFES---TSTQVLDVQFGVSSTSLKLVAAYS-DG----------HVKVYELLDPLILKNWQL  149 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~-dg----------~v~iw~~~~~~~~~~~~~  149 (240)
                      -|-+..++.  ..++....|.-   ....|.++.++|  ..+.|++|+. ..          -+.-|.+-...+.  +++
T Consensus       123 Sy~vs~gt~--q~y~e~hsfsf~~~yp~Gi~~~vy~p--~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Py--yk~  196 (282)
T PF15492_consen  123 SYLVSVGTN--QGYQENHSFSFSSHYPHGINSAVYHP--KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPY--YKQ  196 (282)
T ss_pred             eEEEEcccC--CcceeeEEEEecccCCCceeEEEEcC--CCCEEEEeccCCCCCccccccccCceEEEEcCCCCc--EEE
Confidence            777654332  22344444432   467999999998  7666666552 21          2556665543222  111


Q ss_pred             Eeeeecccc------ee---e------ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          150 QAEFQNAID------SV---T------MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       150 ~~~~~~~~~------~v---~------~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      +........      .+   .      -.+.....+..++.+|++.     +||+...+     |.|.+|++..-
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~-----~La~ih~s-----G~lsLW~iPsL  261 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS-----LLACIHFS-----GSLSLWEIPSL  261 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCC-----EEEEEEcC-----CeEEEEecCcc
Confidence            111110000      00   0      0011122556899999998     89999988     99999999764

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.88  E-value=3.1e-09  Score=94.82  Aligned_cols=147  Identities=18%  Similarity=0.332  Sum_probs=113.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe---cCCeEEEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC---SDGSLLLWE   86 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~d~~v~iwd   86 (240)
                      ..|+.++|+.+|+.+..+..||.+.+|....      ++....+.|.....++.|-.    ..+++++   .++.+.+||
T Consensus      2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p------k~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwD 2321 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASP------KPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWD 2321 (2439)
T ss_pred             chhhhhhhcccCCceeeeccCCceeecccCC------cceeccccCCccccceeeee----hhhhccccCCCCCcccchh
Confidence            5688889999999999999999999999873      45666777888888888843    4455543   367899999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      ......   . ..+.  ..|...++++++.|  ..+.|++|+.+|.|.+||++.      .++.+.++.           
T Consensus      2322 tl~~~~---~-s~v~--~~H~~gaT~l~~~P--~~qllisggr~G~v~l~D~rq------rql~h~~~~----------- 2376 (2439)
T KOG1064|consen 2322 TLLPPM---N-SLVH--TCHDGGATVLAYAP--KHQLLISGGRKGEVCLFDIRQ------RQLRHTFQA----------- 2376 (2439)
T ss_pred             cccCcc---c-ceee--eecCCCceEEEEcC--cceEEEecCCcCcEEEeehHH------HHHHHHhhh-----------
Confidence            764421   1 2233  67889999999999  999999999999999999997      455544432           


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                              |+ .     +.+|++|+..     |.|+||++....
T Consensus      2377 --------~~-~-----~~~f~~~ss~-----g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 --------LD-T-----REYFVTGSSE-----GNIKIWRLSEFG 2401 (2439)
T ss_pred             --------hh-h-----hheeeccCcc-----cceEEEEccccc
Confidence                    22 1     2289999999     999999998753

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.87  E-value=2.2e-08  Score=75.61  Aligned_cols=181  Identities=13%  Similarity=0.102  Sum_probs=114.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-----CccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-----AGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .|+--|+++.++.|+..++++. |-.|.+|++....+ . -.+-.++.+     +.-|++..|+|. .-+.|+-.+..|+
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~-s-FnIVDIKP~nmEeLteVITsaEFhp~-~cn~f~YSSSKGt  237 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ-S-FNIVDIKPANMEELTEVITSAEFHPH-HCNVFVYSSSKGT  237 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCC-c-eeEEEccccCHHHHHHHHhhhccCHh-HccEEEEecCCCc
Confidence            4777899999999999998875 57899999985432 1 122233333     345788899887 2456777788899


Q ss_pred             EEEEEeeeccC---C------CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           82 LLLWEEIVEDA---Q------PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        82 v~iwd~~~~~~---~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      |++.|++...-   -      ...-....-|.+-...|..+.|++  +|+++++-.. -+|++||+...     ..++..
T Consensus       238 IrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~--sGryilsRDy-ltvk~wD~nme-----~~pv~t  309 (433)
T KOG1354|consen  238 IRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH--SGRYILSRDY-LTVKLWDLNME-----AKPVET  309 (433)
T ss_pred             EEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc--CCcEEEEecc-ceeEEEecccc-----CCcceE
Confidence            99999984210   0      000000011122335788899999  9999987665 48999999643     233333


Q ss_pred             eecccceee---ccccccc--eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          153 FQNAIDSVT---MFRKASC--ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       153 ~~~~~~~v~---~~~~~~~--~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      ++.|.....   .....-|  .=+.++|+-+..     +++||+..     +.+++|++..+
T Consensus       310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-----~v~TGsy~-----n~frvf~~~~g  361 (433)
T KOG1354|consen  310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-----YVMTGSYN-----NVFRVFNLARG  361 (433)
T ss_pred             EeehHhHHHHHHHHhhccchhheeEEEEcCCcc-----eEeccccc-----ceEEEecCCCC
Confidence            333322111   0111111  113567887766     89999998     99999996544

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.84  E-value=2.2e-08  Score=75.57  Aligned_cols=150  Identities=13%  Similarity=0.215  Sum_probs=97.8

Q ss_pred             EeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec
Q 026295           27 GSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST  106 (240)
Q Consensus        27 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  106 (240)
                      .+.+..|-+-++..     + ....|. ..+.|.+++|...  ++++..|+..|.|...|++.+ .++..|....-  -|
T Consensus       230 ~G~sqqv~L~nvet-----g-~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~r-nqG~~~~a~rl--yh  297 (425)
T KOG2695|consen  230 VGLSQQVLLTNVET-----G-HQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCR-NQGNGWCAQRL--YH  297 (425)
T ss_pred             ccccceeEEEEeec-----c-cccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeec-ccCCCcceEEE--Ec
Confidence            33444555666652     1 122333 4577899999877  899999999999999999865 22233333222  25


Q ss_pred             cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCce
Q 026295          107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSS  186 (240)
Q Consensus       107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~  186 (240)
                      ...|+++..-.. ++++|++.+.+|+|++||++.-   ....-+....+|..             ..+..|-...++.-.
T Consensus       298 ~Ssvtslq~Lq~-s~q~LmaS~M~gkikLyD~R~~---K~~~~V~qYeGHvN-------------~~a~l~~~v~~eeg~  360 (425)
T KOG2695|consen  298 DSSVTSLQILQF-SQQKLMASDMTGKIKLYDLRAT---KCKKSVMQYEGHVN-------------LSAYLPAHVKEEEGS  360 (425)
T ss_pred             Ccchhhhhhhcc-ccceEeeccCcCceeEeeehhh---hcccceeeeecccc-------------cccccccccccccce
Confidence            677777655321 6778999999999999999861   11222666667643             333444333333336


Q ss_pred             EEEEecCCCCCCCeEEEEEeecCC
Q 026295          187 FVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       187 l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      +++++.|     ...|||.++.+.
T Consensus       361 I~s~GdD-----cytRiWsl~~gh  379 (425)
T KOG2695|consen  361 IFSVGDD-----CYTRIWSLDSGH  379 (425)
T ss_pred             EEEccCe-----eEEEEEecccCc
Confidence            7778887     999999999765

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.83  E-value=1.6e-08  Score=75.41  Aligned_cols=81  Identities=17%  Similarity=0.304  Sum_probs=58.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC------------ccEEEEEEcCCCCCCEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA------------GAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      +.|+++.|...|.+|++|...|.|.+|.-.+...-..+-...+++|+            ..|..+.|..+.....++..+
T Consensus        27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst  106 (460)
T COG5170          27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST  106 (460)
T ss_pred             ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence            46999999999999999999999999987643100122233445553            357889998763334566667


Q ss_pred             cCCeEEEEEeeec
Q 026295           78 SDGSLLLWEEIVE   90 (240)
Q Consensus        78 ~d~~v~iwd~~~~   90 (240)
                      .|.+|++|-+...
T Consensus       107 NdktiKlWKiyek  119 (460)
T COG5170         107 NDKTIKLWKIYEK  119 (460)
T ss_pred             CCceeeeeeeecc
Confidence            8999999987654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.83  E-value=1e-05  Score=61.86  Aligned_cols=201  Identities=15%  Similarity=0.106  Sum_probs=122.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSL   82 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v   82 (240)
                      ...+..+-++|+|++++|.++-.+   |.|--|.++... +....+........+-+.++.+++  |++++++.. .|.|
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~~p~yvsvd~~--g~~vf~AnY~~g~v  113 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGSPPCYVSVDED--GRFVFVANYHSGSV  113 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCCCCeEEEECCC--CCEEEEEEccCceE
Confidence            345577889999999999888654   778888887431 144444444433444578999999  998888764 5689


Q ss_pred             EEEEeeeccCCCcccEEEEEeeecccc----------EEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEe
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQ----------VLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQA  151 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~  151 (240)
                      .++-++...   .-+..+..+. |...          +....+.|  ++++|++... --.|.+|++... .+.... ..
T Consensus       114 ~v~p~~~dG---~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~tP--~~~~l~v~DLG~Dri~~y~~~dg-~L~~~~-~~  185 (346)
T COG2706         114 SVYPLQADG---SLQPVVQVVK-HTGSGPHERQESPHVHSANFTP--DGRYLVVPDLGTDRIFLYDLDDG-KLTPAD-PA  185 (346)
T ss_pred             EEEEcccCC---ccccceeeee-cCCCCCCccccCCccceeeeCC--CCCEEEEeecCCceEEEEEcccC-cccccc-cc
Confidence            999886531   1122223222 2222          78889999  9998888762 235889998741 111111 11


Q ss_pred             eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeec-CCC--CCCc
Q 026295          152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELAL-PED--RSDE  228 (240)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~~--h~~~  228 (240)
                      .++           -++....+.|+|++.     +..+-.+-+    ++|.+|.+.....+......+.. +++  -..+
T Consensus       186 ~v~-----------~G~GPRHi~FHpn~k-----~aY~v~EL~----stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~  245 (346)
T COG2706         186 EVK-----------PGAGPRHIVFHPNGK-----YAYLVNELN----STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW  245 (346)
T ss_pred             ccC-----------CCCCcceEEEcCCCc-----EEEEEeccC----CEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence            111           223334899999997     565555544    89999999875433333222211 111  1224


Q ss_pred             eEEEEEecCC
Q 026295          229 VYAVAWALNI  238 (240)
Q Consensus       229 v~~v~~sp~~  238 (240)
                      ..+|..+|||
T Consensus       246 ~aaIhis~dG  255 (346)
T COG2706         246 AAAIHISPDG  255 (346)
T ss_pred             eeEEEECCCC
Confidence            5566666665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.83  E-value=6.1e-07  Score=73.55  Aligned_cols=175  Identities=16%  Similarity=0.179  Sum_probs=94.4

Q ss_pred             cceEEEEECCCCCEEEE-EeCCCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEE
Q 026295           10 KGTTSSSWNYCGQRLAT-GSTDGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLW   85 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~-~~~d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iw   85 (240)
                      +.....+|+|+|+.|+. .+.++.  |.++|+...     + ...+..+........|+|+  |+.++..+ .++...+|
T Consensus       262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg-----~-~~~lt~~~~~~~~p~wSpD--G~~I~f~s~~~g~~~Iy  333 (448)
T PRK04792        262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK-----A-LTRITRHRAIDTEPSWHPD--GKSLIFTSERGGKPQIY  333 (448)
T ss_pred             CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC-----C-eEECccCCCCccceEECCC--CCEEEEEECCCCCceEE
Confidence            34457899999997765 566665  666676522     2 2233334455677899999  88776544 34554555


Q ss_pred             --EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEE--EEecCcccccceeEEeeeeccccee
Q 026295           86 --EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKV--YELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        86 --d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~i--w~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                        |+..+.     ...+ ++.+  ......+|+|  +|.+++..+. ++...|  +|+.+      .+. ..+.... ..
T Consensus       334 ~~dl~~g~-----~~~L-t~~g--~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~------g~~-~~lt~~~-~d  395 (448)
T PRK04792        334 RVNLASGK-----VSRL-TFEG--EQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLET------GAM-QVLTSTR-LD  395 (448)
T ss_pred             EEECCCCC-----EEEE-ecCC--CCCcCeeECC--CCCEEEEEEecCCceEEEEEECCC------CCe-EEccCCC-CC
Confidence              443331     1211 1222  2234568999  8988776654 444444  55544      121 1121111 00


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCe--EEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNS--SKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~--i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                                ....|+|++.     .|+....++    +.  +.+++.+...     ...+..   +.+.+...+|+|-
T Consensus       396 ----------~~ps~spdG~-----~I~~~~~~~----g~~~l~~~~~~G~~-----~~~l~~---~~g~~~~p~Wsp~  447 (448)
T PRK04792        396 ----------ESPSVAPNGT-----MVIYSTTYQ----GKQVLAAVSIDGRF-----KARLPA---GQGEVKSPAWSPF  447 (448)
T ss_pred             ----------CCceECCCCC-----EEEEEEecC----CceEEEEEECCCCc-----eEECcC---CCCCcCCCccCCC
Confidence                      1457999987     555555442    44  4555543211     122232   2336788899984

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.83  E-value=9.8e-07  Score=77.85  Aligned_cols=190  Identities=15%  Similarity=0.270  Sum_probs=117.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------CC----------------C-cEEEE--------
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP------------SS----------------S-SFTCN--------   49 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~------------~~----------------~-~~~~~--------   49 (240)
                      ..+..|.+++||||+..|+....++++-+-...=.            +.                + .++..        
T Consensus       118 ~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  118 SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            35678999999999999999998888876542200            00                0 00000        


Q ss_pred             ------eEeeecCccEEEEEEcCCCCCCEEEEEec---C---CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEee
Q 026295           50 ------LKTKVHAGAILKVVWVPPEFGDAVACICS---D---GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGV  117 (240)
Q Consensus        50 ------~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  117 (240)
                            ..+. +...-..|+|-.+  |.+||+.+.   .   ..+++|+-+.        ....+-....+--..++|.|
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISWRGD--G~yFAVss~~~~~~~~R~iRVy~ReG--------~L~stSE~v~gLe~~l~WrP  266 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISWRGD--GEYFAVSSVEPETGSRRVIRVYSREG--------ELQSTSEPVDGLEGALSWRP  266 (928)
T ss_pred             CCccccCccc-cCCCceEEEECCC--CcEEEEEEEEcCCCceeEEEEECCCc--------eEEeccccCCCccCCccCCC
Confidence                  0011 2234457899888  999998765   2   4688888652        33222222222335789999


Q ss_pred             cCCCcEEEEEeC---CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCC
Q 026295          118 SSTSLKLVAAYS---DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSD  194 (240)
Q Consensus       118 ~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd  194 (240)
                        .|.++|+.-.   ...|.+|.-+.   +..++....+......+.          .+.|++++.     +||+-..| 
T Consensus       267 --sG~lIA~~q~~~~~~~VvFfErNG---LrhgeF~l~~~~~~~~v~----------~l~Wn~ds~-----iLAv~~~~-  325 (928)
T PF04762_consen  267 --SGNLIASSQRLPDRHDVVFFERNG---LRHGEFTLRFDPEEEKVI----------ELAWNSDSE-----ILAVWLED-  325 (928)
T ss_pred             --CCCEEEEEEEcCCCcEEEEEecCC---cEeeeEecCCCCCCceee----------EEEECCCCC-----EEEEEecC-
Confidence              9998887764   34566776442   111222222212223333          899999998     89887764 


Q ss_pred             CCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          195 TPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       195 ~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                           .|.+|...+-.  |.+..++.-..  ...+..+.|+|-
T Consensus       326 -----~vqLWt~~NYH--WYLKqei~~~~--~~~~~~~~Wdpe  359 (928)
T PF04762_consen  326 -----RVQLWTRSNYH--WYLKQEIRFSS--SESVNFVKWDPE  359 (928)
T ss_pred             -----CceEEEeeCCE--EEEEEEEEccC--CCCCCceEECCC
Confidence                 59999987754  77777765322  224555899985

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=3.4e-07  Score=73.39  Aligned_cols=108  Identities=16%  Similarity=0.260  Sum_probs=78.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----------C-Ce
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----------D-GS   81 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------d-~~   81 (240)
                      +-+.|||.|.+|+|-...| |.+|--.     .+..++.+. |. .|..+.|||.  ..||++-+.          + ..
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~-----~f~r~~RF~-Hp-~Vq~idfSP~--EkYLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGE-----SFDRIQRFY-HP-GVQFIDFSPN--EKYLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCc-----cHHHHHhcc-CC-CceeeecCCc--cceEEEecCCccccCcccCCCce
Confidence            4689999999999998866 6799655     455555554 54 4889999999  899988543          1 47


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeec--ccc-EEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFEST--STQ-VLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~--~~~-v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ++|||+.++       ...+.|...  ... -.-..||.  ++.++|.-..+ .|.||+..+
T Consensus       284 l~IWDI~tG-------~lkrsF~~~~~~~~~WP~frWS~--DdKy~Arm~~~-sisIyEtps  335 (698)
T KOG2314|consen  284 LIIWDIATG-------LLKRSFPVIKSPYLKWPIFRWSH--DDKYFARMTGN-SISIYETPS  335 (698)
T ss_pred             EEEEEcccc-------chhcceeccCCCccccceEEecc--CCceeEEeccc-eEEEEecCc
Confidence            899999887       666666542  122 23468888  99988887775 578887643

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.7e-07  Score=74.95  Aligned_cols=111  Identities=14%  Similarity=0.275  Sum_probs=87.4

Q ss_pred             ccceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---CeEE
Q 026295            9 DKGTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---GSLL   83 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~   83 (240)
                      +++|.++.|+++++-++++  -+=-.+.|||++.      .++..+.  +++-+.+-|+|.  |++++.++.+   |.+-
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~--egpRN~~~fnp~--g~ii~lAGFGNL~G~mE  339 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFP--EGPRNTAFFNPH--GNIILLAGFGNLPGDME  339 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCC--CCCccceEECCC--CCEEEEeecCCCCCceE
Confidence            4789999999999876664  3446799999973      3455553  678889999999  9998887754   6899


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe------CCCcEEEEEecC
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY------SDGHVKVYELLD  140 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~------~dg~v~iw~~~~  140 (240)
                      +||+.+.       +++..+..  ...+-+.|+|  +|++|++++      .|+.++||+...
T Consensus       340 vwDv~n~-------K~i~~~~a--~~tt~~eW~P--dGe~flTATTaPRlrvdNg~KiwhytG  391 (566)
T KOG2315|consen  340 VWDVPNR-------KLIAKFKA--ANTTVFEWSP--DGEYFLTATTAPRLRVDNGIKIWHYTG  391 (566)
T ss_pred             EEeccch-------hhcccccc--CCceEEEEcC--CCcEEEEEeccccEEecCCeEEEEecC
Confidence            9999875       77777765  3456689999  999999987      367799999863

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.79  E-value=4e-07  Score=68.86  Aligned_cols=170  Identities=15%  Similarity=0.175  Sum_probs=118.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ..+++++.+.++..+|.+|-.+|++.-+.+...- .....++....|...|..+-|+..  ...+++.+.|..+.---.+
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf-nkm~~~r~~~~h~~~v~~~if~~~--~e~V~s~~~dk~~~~hc~e  144 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF-NKMTFLKDYLAHQARVSAIVFSLT--HEWVLSTGKDKQFAWHCTE  144 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhh-hhcchhhhhhhhhcceeeEEecCC--ceeEEEeccccceEEEeec
Confidence            3578899999999999999999999988775310 022334444568888888888776  6777777777554322111


Q ss_pred             eccC----------------------------------CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295           89 VEDA----------------------------------QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK  134 (240)
Q Consensus        89 ~~~~----------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  134 (240)
                      .+..                                  ......++..+.+|...+.+++|.|  ....|.+|..|..|.
T Consensus       145 ~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~--~~~~LfSg~~d~~vi  222 (404)
T KOG1409|consen  145 SGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP--GQRLLFSGASDHSVI  222 (404)
T ss_pred             cCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC--CCcEEEeccccCceE
Confidence            1100                                  0112234566778999999999988  888899999999999


Q ss_pred             EEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       135 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      +||+...     .....++..|...++          .++..+...     .|.+++.|     |.|-+|+...
T Consensus       223 ~wdigg~-----~g~~~el~gh~~kV~----------~l~~~~~t~-----~l~S~~ed-----g~i~~w~mn~  271 (404)
T KOG1409|consen  223 MWDIGGR-----KGTAYELQGHNDKVQ----------ALSYAQHTR-----QLISCGED-----GGIVVWNMNV  271 (404)
T ss_pred             EEeccCC-----cceeeeeccchhhhh----------hhhhhhhhe-----eeeeccCC-----CeEEEEeccc
Confidence            9999642     233445567777666          666555554     68888888     9999999854

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.78  E-value=1.3e-06  Score=64.06  Aligned_cols=153  Identities=12%  Similarity=0.042  Sum_probs=97.2

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc--cEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           23 RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG--AILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      .+..++.|.++++.++....       ..+..|..  .+.++.++++  +..+++.+....|..|.+.....     ..+
T Consensus       130 ~~~i~sndht~k~~~~~~~s-------~~~~~h~~~~~~ns~~~snd--~~~~~~Vgds~~Vf~y~id~~se-----y~~  195 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDS-------NKFAVHNQNLTQNSLHYSND--PSWGSSVGDSRRVFRYAIDDESE-----YIE  195 (344)
T ss_pred             ceeeccCCcceeEEEEecCc-------ccceeeccccceeeeEEcCC--CceEEEecCCCcceEEEeCCccc-----eee
Confidence            45556677777777766331       11112333  3788999999  99999999889999998875421     333


Q ss_pred             E-EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          101 K-SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       101 ~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                      . .....+..=.+..|+.  +...+|++..||++.|||++....+ ..+....-..|.+.++          .+.|+|.+
T Consensus       196 ~~~~a~t~D~gF~~S~s~--~~~~FAv~~Qdg~~~I~DVR~~~tp-m~~~sstrp~hnGa~R----------~c~Fsl~g  262 (344)
T KOG4532|consen  196 NIYEAPTSDHGFYNSFSE--NDLQFAVVFQDGTCAIYDVRNMATP-MAEISSTRPHHNGAFR----------VCRFSLYG  262 (344)
T ss_pred             eeEecccCCCceeeeecc--CcceEEEEecCCcEEEEEecccccc-hhhhcccCCCCCCceE----------EEEecCCC
Confidence            3 2223334446778876  8888999999999999999863111 1111111123555555          78899866


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      ..  ..+|.+-..      +.+.+-|+++..
T Consensus       263 ~l--DLLf~sEhf------s~~hv~D~R~~~  285 (344)
T KOG4532|consen  263 LL--DLLFISEHF------SRVHVVDTRNYV  285 (344)
T ss_pred             cc--eEEEEecCc------ceEEEEEcccCc
Confidence            42  323343333      789999988764

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.78  E-value=3.7e-08  Score=81.31  Aligned_cols=167  Identities=17%  Similarity=0.232  Sum_probs=117.4

Q ss_pred             ceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           11 GTTSSSWNYCG---QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        11 ~v~~~~~s~~~---~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      .|-.+.|+|..   ..+++.+... -.+|++..+.  ....-..+.+|...|+++.|.|. ....+++++.|..+..||+
T Consensus        69 ~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss--~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~  144 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSS--SNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDM  144 (1081)
T ss_pred             hhcceecccCCCCceeEEecCcch-hhhhhhhcCC--ccceEEEEecCccceeccccCCC-CCcceeeccccccceeeec
Confidence            35567788754   2456655544 4589998664  33344556799999999999886 4688999999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      +...      .++..+.........|+|+.. ++. +++.+...-|.+||++.+     ..+...++.+...+       
T Consensus       145 rSp~------~p~ys~~~w~s~asqVkwnyk-~p~-vlasshg~~i~vwd~r~g-----s~pl~s~K~~vs~v-------  204 (1081)
T KOG0309|consen  145 RSPH------RPFYSTSSWRSAASQVKWNYK-DPN-VLASSHGNDIFVWDLRKG-----STPLCSLKGHVSSV-------  204 (1081)
T ss_pred             cCCC------cceeeeecccccCceeeeccc-Ccc-hhhhccCCceEEEeccCC-----CcceEEecccceee-------
Confidence            8764      566666666677889999862 444 555555667999999975     34455555554333       


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW  213 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~  213 (240)
                         +.+.|+.....    .+.+.+.|     ++|+.|+.+....++
T Consensus       205 ---n~~~fnr~~~s----~~~s~~~d-----~tvkfw~y~kSt~e~  238 (1081)
T KOG0309|consen  205 ---NSIDFNRFKYS----EIMSSSND-----GTVKFWDYSKSTTES  238 (1081)
T ss_pred             ---ehHHHhhhhhh----hhcccCCC-----Cceeeeccccccccc
Confidence               36666654421    67888888     999999997654444

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.75  E-value=6e-07  Score=74.77  Aligned_cols=159  Identities=14%  Similarity=0.190  Sum_probs=114.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC----------CCEEEEEecCC
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF----------GDAVACICSDG   80 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----------~~~l~s~~~d~   80 (240)
                      .-.++.|+|.| +||-|+. ..|.+-|..     +.+.++.+..|...|+.+.|.|...          .-+++++...|
T Consensus        17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~-----s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   17 NRNAADWSPSG-LIAYGSH-SLVSVVDSR-----SLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccCccc-eEEEecC-ceEEEEehh-----hhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            35678898877 7777766 578888888     7788999999999999999987521          23577788889


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC--cEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS--LKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      .|.+||+...       ..+..+..+...+..++|-|.++.  .+|++-....++.+|+..++      +..-.......
T Consensus        90 rIil~d~~~~-------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG------~k~Wk~~ys~~  156 (1062)
T KOG1912|consen   90 RIILVDFVLA-------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG------EKFWKYDYSHE  156 (1062)
T ss_pred             cEEEEEehhh-------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC------ceeeccccCCc
Confidence            9999999776       566677778889999999885443  35666667789999999884      33333333223


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ...          ++.++|....    .+..-+..     |.+.+-+...
T Consensus       157 iLs----------~f~~DPfd~r----h~~~l~s~-----g~vl~~~~l~  187 (1062)
T KOG1912|consen  157 ILS----------CFRVDPFDSR----HFCVLGSK-----GFVLSCKDLG  187 (1062)
T ss_pred             cee----------eeeeCCCCcc----eEEEEccC-----ceEEEEeccC
Confidence            333          6777776642    45555555     7887777644

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.75  E-value=6.6e-08  Score=86.72  Aligned_cols=156  Identities=16%  Similarity=0.236  Sum_probs=120.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ..|.++.=+|...+-+||+.||.|++|.-...     +.+..++  +. ..|+.+.|+..  |+.+..+..||.+.+|..
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~-----~~v~~~rt~g~-s~vtr~~f~~q--Gnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG-----QQVVCFRTAGN-SRVTRSRFNHQ--GNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCC-----CeEEEeeccCc-chhhhhhhccc--CCceeeeccCCceeeccc
Confidence            46777777888899999999999999988632     3344443  43 77899999998  999999999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe---CCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY---SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ..        ++....+.|......+.|--    ..+++++   .++.+.+||...+..   ..++.  ..|...++   
T Consensus      2281 ~p--------k~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~---~s~v~--~~H~~gaT--- 2340 (2439)
T KOG1064|consen 2281 SP--------KPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPM---NSLVH--TCHDGGAT--- 2340 (2439)
T ss_pred             CC--------cceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcc---cceee--eecCCCce---
Confidence            73        77888888888888888843    4456654   567899999875422   23333  55655555   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                             ++++-|...     +|++|+.+     |.|.+||++..+
T Consensus      2341 -------~l~~~P~~q-----llisggr~-----G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2341 -------VLAYAPKHQ-----LLISGGRK-----GEVCLFDIRQRQ 2369 (2439)
T ss_pred             -------EEEEcCcce-----EEEecCCc-----CcEEEeehHHHH
Confidence                   899999987     99999999     999999997643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.72  E-value=8.2e-06  Score=66.25  Aligned_cols=145  Identities=16%  Similarity=0.213  Sum_probs=90.0

Q ss_pred             ccEEEEEEcCCCCCCEEEEE----ecCCe----EEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEE
Q 026295           57 GAILKVVWVPPEFGDAVACI----CSDGS----LLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~----~~d~~----v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                      ....++.|+.. .+..+.+.    +.+|.    -++|+.....     .+.+.... .....|.+.+++|  +...++.|
T Consensus       206 ~dPl~~~Fs~~-~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k-----lqrvsvtsipL~s~v~~ca~sp--~E~kLvlG  277 (545)
T PF11768_consen  206 NDPLDVEFSLN-QPYQIHTVEQSISVKGEPSADSCIYECSRNK-----LQRVSVTSIPLPSQVICCARSP--SEDKLVLG  277 (545)
T ss_pred             CCcEEEEccCC-CCcEEEEEEEecCCCCCceeEEEEEEeecCc-----eeEEEEEEEecCCcceEEecCc--ccceEEEE
Confidence            33457777754 24444432    23443    2466664321     12222222 3457889999999  88899999


Q ss_pred             eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          128 YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       128 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      +.||.|.+||....       .....+.           .+.++.++|+|++.     ++++|+..     |.+.+||.-
T Consensus       278 C~DgSiiLyD~~~~-------~t~~~ka-----------~~~P~~iaWHp~ga-----i~~V~s~q-----GelQ~FD~A  329 (545)
T PF11768_consen  278 CEDGSIILYDTTRG-------VTLLAKA-----------EFIPTLIAWHPDGA-----IFVVGSEQ-----GELQCFDMA  329 (545)
T ss_pred             ecCCeEEEEEcCCC-------eeeeeee-----------cccceEEEEcCCCc-----EEEEEcCC-----ceEEEEEee
Confidence            99999999998752       1111111           11224899999998     89999998     999999985


Q ss_pred             cCCCCc---------ceeEeeecCCCCCCceEEEEEecC
Q 026295          208 EAHNRW---------LPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       208 ~~~~~~---------~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      -.....         ...-.+..+-.++..+-.++|+|.
T Consensus       330 Lspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~  368 (545)
T PF11768_consen  330 LSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPA  368 (545)
T ss_pred             cCccceeeccccCCCccEEeeehhccCcchhheeEeccC
Confidence            432221         222333344456777888899854

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.72  E-value=5.2e-08  Score=74.75  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=65.6

Q ss_pred             eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCC
Q 026295           52 TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        52 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      +-+|-..+++|.|+|+  +++++++..|..|++-.+...       ..+..|- +|+.-|..++.-+  + ..|++++.|
T Consensus       147 ~lGhvSml~dVavS~D--~~~IitaDRDEkIRvs~ypa~-------f~IesfclGH~eFVS~isl~~--~-~~LlS~sGD  214 (390)
T KOG3914|consen  147 ILGHVSMLLDVAVSPD--DQFIITADRDEKIRVSRYPAT-------FVIESFCLGHKEFVSTISLTD--N-YLLLSGSGD  214 (390)
T ss_pred             hhhhhhhhheeeecCC--CCEEEEecCCceEEEEecCcc-------cchhhhccccHhheeeeeecc--C-ceeeecCCC
Confidence            3478889999999999  999999999999998877543       3444443 6999999999976  4 448999999


Q ss_pred             CcEEEEEecCccc
Q 026295          131 GHVKVYELLDPLI  143 (240)
Q Consensus       131 g~v~iw~~~~~~~  143 (240)
                      ++|++||++++..
T Consensus       215 ~tlr~Wd~~sgk~  227 (390)
T KOG3914|consen  215 KTLRLWDITSGKL  227 (390)
T ss_pred             CcEEEEecccCCc
Confidence            9999999998533

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.70  E-value=2.7e-08  Score=72.38  Aligned_cols=155  Identities=10%  Similarity=0.097  Sum_probs=93.1

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-----cCCeEEEEEeeec
Q 026295           16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-----SDGSLLLWEEIVE   90 (240)
Q Consensus        16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-----~d~~v~iwd~~~~   90 (240)
                      +.+-.++.++++..||.+.+++.++.    .+.......-...-.+.++...  ++.+.++.     .-+..+.|+++..
T Consensus        96 ~~s~~~t~V~~~~~dg~~~v~s~~~~----~~~~~~i~~~~~~~as~~~~~~--~~~i~s~~~g~~n~~d~~~a~~~~p~  169 (319)
T KOG4714|consen   96 ACTMTDNRVCIGYADGSLAVFSTDKD----LALMSRIPSIHSGSASRKICRH--GNSILSGGCGNWNAQDNFYANTLDPI  169 (319)
T ss_pred             cccccCCceEecCCCceEEEEechHH----Hhhhhhcccccccccccceeec--ccEEecCCcceEeeccceeeeccccc
Confidence            33445678999999999999998731    1111111111111223333333  44444432     1234456665432


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                             ..+..-......|.+++-+|.+ ...+++|+.||.+-+||.+..     -.+...+..|...+.         
T Consensus       170 -------~t~~~~~~~~~~v~~l~~hp~q-q~~v~cgt~dg~~~l~d~rn~-----~~p~S~l~ahk~~i~---------  227 (319)
T KOG4714|consen  170 -------KTLIPSKKALDAVTALCSHPAQ-QHLVCCGTDDGIVGLWDARNV-----AMPVSLLKAHKAEIW---------  227 (319)
T ss_pred             -------ccccccccccccchhhhCCccc-ccEEEEecCCCeEEEEEcccc-----cchHHHHHHhhhhhh---------
Confidence                   1111111122348888888843 345788899999999999863     122334456666665         


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                       .|.|+|..++    .|.+++.|     |.+.-||..+
T Consensus       228 -eV~FHpk~p~----~Lft~sed-----Gslw~wdas~  255 (319)
T KOG4714|consen  228 -EVHFHPKNPE----HLFTCSED-----GSLWHWDAST  255 (319)
T ss_pred             -heeccCCCch----heeEecCC-----CcEEEEcCCC
Confidence             8999999864    79999999     9999999874

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.70  E-value=8.5e-06  Score=64.57  Aligned_cols=152  Identities=17%  Similarity=0.166  Sum_probs=107.5

Q ss_pred             ECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEEeeeccCCC
Q 026295           17 WNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWEEIVEDAQP   94 (240)
Q Consensus        17 ~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~   94 (240)
                      |++ +|.+++..|. |...|.+....     ..+ . -+|.+.|.-..+.-+  ++-++.|..|| .+-|+|...+    
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~-----~~i-q-v~~~~~VrY~r~~~~--~e~~vigt~dgD~l~iyd~~~~----  392 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDG-----YSI-Q-VGKKGGVRYRRIQVD--PEGDVIGTNDGDKLGIYDKDGG----  392 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCC-----eeE-E-cCCCCceEEEEEccC--CcceEEeccCCceEEEEecCCc----
Confidence            444 6888988887 67777766521     122 2 246777888888777  67788899999 8999999764    


Q ss_pred             cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEE
Q 026295           95 LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASIS  174 (240)
Q Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~  174 (240)
                          .+..+...-+.|.++..+|  +|++++++.....+.++|+.++    ..+++.  +..-.-|.          ...
T Consensus       393 ----e~kr~e~~lg~I~av~vs~--dGK~~vvaNdr~el~vididng----nv~~id--kS~~~lIt----------df~  450 (668)
T COG4946         393 ----EVKRIEKDLGNIEAVKVSP--DGKKVVVANDRFELWVIDIDNG----NVRLID--KSEYGLIT----------DFD  450 (668)
T ss_pred             ----eEEEeeCCccceEEEEEcC--CCcEEEEEcCceEEEEEEecCC----CeeEec--ccccceeE----------EEE
Confidence                4556666668899999999  9999999999889999998872    112221  12222333          889


Q ss_pred             EeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          175 WNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       175 ~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      |+|++.     .+|-+.-+ +-....|++||+.+++
T Consensus       451 ~~~nsr-----~iAYafP~-gy~tq~Iklydm~~~K  480 (668)
T COG4946         451 WHPNSR-----WIAYAFPE-GYYTQSIKLYDMDGGK  480 (668)
T ss_pred             EcCCce-----eEEEecCc-ceeeeeEEEEecCCCe
Confidence            999987     78877654 1111579999988754

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.66  E-value=2.7e-07  Score=76.20  Aligned_cols=125  Identities=14%  Similarity=0.233  Sum_probs=92.6

Q ss_pred             CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |.+++.+|.+.|.-+.|+.+.+.|-|...+|.|.||-+.+.   .|-.-..-......|.+++|+.+  |..+...-.||
T Consensus        63 mNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg---sW~EEMiNnRnKSvV~SmsWn~d--G~kIcIvYeDG  137 (1189)
T KOG2041|consen   63 MNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG---SWCEEMINNRNKSVVVSMSWNLD--GTKICIVYEDG  137 (1189)
T ss_pred             hhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc---cHHHHHhhCcCccEEEEEEEcCC--CcEEEEEEccC
Confidence            56789999999999999999999999999999999998743   22111111234567899999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      .|.+=.+...        .+..-.........+.|++  +...++.+-.+|.+++||.+.
T Consensus       138 avIVGsvdGN--------RIwgKeLkg~~l~hv~ws~--D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  138 AVIVGSVDGN--------RIWGKELKGQLLAHVLWSE--DLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             CEEEEeeccc--------eecchhcchheccceeecc--cHHHHHhhhcCCcEEEecccc
Confidence            9988776543        1111111122344688988  888777788889999998764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=1.1e-05  Score=65.40  Aligned_cols=112  Identities=12%  Similarity=0.087  Sum_probs=64.7

Q ss_pred             ceEEEEECCCCCE-EEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC--eEE
Q 026295           11 GTTSSSWNYCGQR-LATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG--SLL   83 (240)
Q Consensus        11 ~v~~~~~s~~~~~-l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~--~v~   83 (240)
                      .+..-+|+|+|+. ++..+.+   ..|.++|+...   ..+.+..   ..+......|+|+  |..++ +.+.++  .|.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~~lt~---~~g~~~~~~~SPD--G~~la~~~~~~g~~~Iy  260 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKEKIAS---SQGMLVVSDVSKD--GSKLLLTMAPKGQPDIY  260 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEEEEec---CCCcEEeeEECCC--CCEEEEEEccCCCcEEE
Confidence            5667899999985 6654443   45777887632   2233322   3455667889999  87655 444444  566


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecC
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLD  140 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~  140 (240)
                      ++++..+       . ...+...........|+|  +|+.|+..+. .+  .|.+.|+.+
T Consensus       261 ~~dl~~g-------~-~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~  310 (419)
T PRK04043        261 LYDTNTK-------T-LTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNS  310 (419)
T ss_pred             EEECCCC-------c-EEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCC
Confidence            6666443       2 222322222234567999  9987666653 34  455555543

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.61  E-value=2.5e-06  Score=69.18  Aligned_cols=74  Identities=15%  Similarity=0.244  Sum_probs=61.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .+...|.|++++|+...|+.|..||+|.+||....       +..+....-....++|+|+  |.++++|+..|.+.+||
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-------~t~~~ka~~~P~~iaWHp~--gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-------VTLLAKAEFIPTLIAWHPD--GAIFVVGSEQGELQCFD  327 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-------eeeeeeecccceEEEEcCC--CcEEEEEcCCceEEEEE
Confidence            45678999999999999999999999999998732       2222233455789999999  99999999999999999


Q ss_pred             eee
Q 026295           87 EIV   89 (240)
Q Consensus        87 ~~~   89 (240)
                      ..-
T Consensus       328 ~AL  330 (545)
T PF11768_consen  328 MAL  330 (545)
T ss_pred             eec
Confidence            753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.60  E-value=3.6e-07  Score=72.04  Aligned_cols=133  Identities=18%  Similarity=0.233  Sum_probs=102.5

Q ss_pred             EEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEE
Q 026295           48 CNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVA  126 (240)
Q Consensus        48 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~  126 (240)
                      +...|..|.+.|..|.|+..  |..+++++.|..|.+||-...       .+...| .+|...|....|-|..+.+-+++
T Consensus       134 l~~kL~~H~GcVntV~FN~~--Gd~l~SgSDD~~vv~WdW~~~-------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~  204 (559)
T KOG1334|consen  134 LQKKLNKHKGCVNTVHFNQR--GDVLASGSDDLQVVVWDWVSG-------SPKLSFESGHCNNVFQAKFIPFSGDRTIVT  204 (559)
T ss_pred             hhhcccCCCCccceeeeccc--CceeeccCccceEEeehhhcc-------CcccccccccccchhhhhccCCCCCcCcee
Confidence            44567789999999999998  999999999999999998665       444444 47888999999999777788999


Q ss_pred             EeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          127 AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       127 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      ++.||+|++=.+...   ...+....+..|..++.          .++..|....    .|.+++.|     +.+.=+|+
T Consensus       205 ~s~dgqvr~s~i~~t---~~~e~t~rl~~h~g~vh----------klav~p~sp~----~f~S~geD-----~~v~~~Dl  262 (559)
T KOG1334|consen  205 SSRDGQVRVSEILET---GYVENTKRLAPHEGPVH----------KLAVEPDSPK----PFLSCGED-----AVVFHIDL  262 (559)
T ss_pred             ccccCceeeeeeccc---cceecceecccccCccc----------eeeecCCCCC----cccccccc-----cceeeeee
Confidence            999999998776542   11222344556666666          6777777643    68889988     99999998


Q ss_pred             ecCCC
Q 026295          207 DEAHN  211 (240)
Q Consensus       207 ~~~~~  211 (240)
                      +....
T Consensus       263 r~~~p  267 (559)
T KOG1334|consen  263 RQDVP  267 (559)
T ss_pred             ccCCc
Confidence            77543

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.55  E-value=2.2e-07  Score=67.71  Aligned_cols=75  Identities=20%  Similarity=0.295  Sum_probs=61.8

Q ss_pred             cceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .+|.+++-+|.. ..+++|+.||.+.+||.+..    -.+...++.|+.+++.+-|.|. .+..|++++.||.+..||..
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~----~~p~S~l~ahk~~i~eV~FHpk-~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV----AMPVSLLKAHKAEIWEVHFHPK-NPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccc----cchHHHHHHhhhhhhheeccCC-CchheeEecCCCcEEEEcCC
Confidence            358899989955 57888899999999999843    2345667789999999999886 47788999999999999976


Q ss_pred             e
Q 026295           89 V   89 (240)
Q Consensus        89 ~   89 (240)
                      .
T Consensus       255 ~  255 (319)
T KOG4714|consen  255 T  255 (319)
T ss_pred             C
Confidence            3

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.55  E-value=8.2e-07  Score=75.15  Aligned_cols=147  Identities=14%  Similarity=0.168  Sum_probs=103.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---------CCeEEEEEeee
Q 026295           19 YCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---------DGSLLLWEEIV   89 (240)
Q Consensus        19 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---------d~~v~iwd~~~   89 (240)
                      .++++|.+|...|+|.+-|..     +.+.++++..|++.|.++..  .  |++|++++.         |..|++||+++
T Consensus       185 ~Nnr~lf~G~t~G~V~LrD~~-----s~~~iht~~aHs~siSDfDv--~--GNlLitCG~S~R~~~l~~D~FvkVYDLRm  255 (1118)
T KOG1275|consen  185 YNNRNLFCGDTRGTVFLRDPN-----SFETIHTFDAHSGSISDFDV--Q--GNLLITCGYSMRRYNLAMDPFVKVYDLRM  255 (1118)
T ss_pred             ecCcEEEeecccceEEeecCC-----cCceeeeeeccccceeeeec--c--CCeEEEeecccccccccccchhhhhhhhh
Confidence            467899999999999999998     78899999999999988775  3  788888765         55789999987


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      -       +.+..+.-+..+ .-+.|+|.- ...+++++..|+..+-|..+-.+....  +.-+......+.        
T Consensus       256 m-------ral~PI~~~~~P-~flrf~Psl-~t~~~V~S~sGq~q~vd~~~lsNP~~~--~~~v~p~~s~i~--------  316 (1118)
T KOG1275|consen  256 M-------RALSPIQFPYGP-QFLRFHPSL-TTRLAVTSQSGQFQFVDTATLSNPPAG--VKMVNPNGSGIS--------  316 (1118)
T ss_pred             h-------hccCCcccccCc-hhhhhcccc-cceEEEEecccceeeccccccCCCccc--eeEEccCCCcce--------
Confidence            5       434333332222 557788842 235888888999999884431111101  111111111122        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                        .+.+++++.     .+|.|..+     |.|.+|.
T Consensus       317 --~fDiSsn~~-----alafgd~~-----g~v~~wa  340 (1118)
T KOG1275|consen  317 --AFDISSNGD-----ALAFGDHE-----GHVNLWA  340 (1118)
T ss_pred             --eEEecCCCc-----eEEEeccc-----CcEeeec
Confidence              778888887     89999999     9999998

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.54  E-value=2.9e-05  Score=69.97  Aligned_cols=166  Identities=8%  Similarity=0.012  Sum_probs=100.3

Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee---------------cCccEEEEEEcCCCCCC-EEEE
Q 026295           13 TSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV---------------HAGAILKVVWVPPEFGD-AVAC   75 (240)
Q Consensus        13 ~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---------------h~~~v~~~~~~~~~~~~-~l~s   75 (240)
                      ..++|+| ++.++++...++.|++|+....     .. ..+.+               .-.....|+++|+  +. ++++
T Consensus       686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-----~v-~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspd--G~~LYVA  757 (1057)
T PLN02919        686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDG-----VT-RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPD--LKELYIA  757 (1057)
T ss_pred             eEEEEecCCCeEEEEECCCCeEEEEECCCC-----eE-EEEecCCccccCCCCccccccccCccEEEEeCC--CCEEEEE
Confidence            5789999 5666777778899999998632     11 11111               0123457999998  87 4455


Q ss_pred             EecCCeEEEEEeeeccCCCcccEEEE-----------Eeee--------ccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295           76 ICSDGSLLLWEEIVEDAQPLQWKLCK-----------SFES--------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY  136 (240)
Q Consensus        76 ~~~d~~v~iwd~~~~~~~~~~~~~~~-----------~~~~--------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  136 (240)
                      -..++.|++||+..+..     ..+.           .+-.        .-.....+++++  +|..+++-+.++.|++|
T Consensus       758 Ds~n~~Irv~D~~tg~~-----~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--dG~LYVADs~N~rIrvi  830 (1057)
T PLN02919        758 DSESSSIRALDLKTGGS-----RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK--DGQIYVADSYNHKIKKL  830 (1057)
T ss_pred             ECCCCeEEEEECCCCcE-----EEEEecccccCcccccccCCCCchhhhhccCCceeeEeC--CCcEEEEECCCCEEEEE
Confidence            55678999999865411     1110           0000        011235788988  88888888899999999


Q ss_pred             EecCcccccceeEEeeeecccceee----ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          137 ELLDPLILKNWQLQAEFQNAIDSVT----MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      |..+      .... .+......-.    ...........+++++++.     ++++-..+     +.|++||+.+..
T Consensus       831 D~~t------g~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-----lyVaDt~N-----n~Irvid~~~~~  891 (1057)
T PLN02919        831 DPAT------KRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-----LFVADTNN-----SLIRYLDLNKGE  891 (1057)
T ss_pred             ECCC------CeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCC-----EEEEECCC-----CEEEEEECCCCc
Confidence            9875      2222 1111100000    0001111234788999886     66666666     999999997754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.48  E-value=2.3e-05  Score=69.42  Aligned_cols=157  Identities=18%  Similarity=0.344  Sum_probs=103.5

Q ss_pred             cccceEEEEECCCCCEEEEEeC---C---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---
Q 026295            8 LDKGTTSSSWNYCGQRLATGST---D---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---   78 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~---d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---   78 (240)
                      +++.-..++|-.||.++|+.+.   .   ..+|||+-++      .+..+-..-.+--..++|.|.  |+++|+.-.   
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG------~L~stSE~v~gLe~~l~WrPs--G~lIA~~q~~~~  279 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG------ELQSTSEPVDGLEGALSWRPS--GNLIASSQRLPD  279 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc------eEEeccccCCCccCCccCCCC--CCEEEEEEEcCC
Confidence            5556678999999999999875   2   5789998763      222222222333457899999  999988754   


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEee----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFE----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      ...|.+|.-..        ..-..|.    .....|..+.|++  ++..||....|. |.+|-...    +.|-+.+++.
T Consensus       280 ~~~VvFfErNG--------LrhgeF~l~~~~~~~~v~~l~Wn~--ds~iLAv~~~~~-vqLWt~~N----YHWYLKqei~  344 (928)
T PF04762_consen  280 RHDVVFFERNG--------LRHGEFTLRFDPEEEKVIELAWNS--DSEILAVWLEDR-VQLWTRSN----YHWYLKQEIR  344 (928)
T ss_pred             CcEEEEEecCC--------cEeeeEecCCCCCCceeeEEEECC--CCCEEEEEecCC-ceEEEeeC----CEEEEEEEEE
Confidence            23455665432        2333332    3456789999988  999998887665 99998876    4577777765


Q ss_pred             cccc-eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          155 NAID-SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       155 ~~~~-~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      -... .+.          .+.|+|....    .|.+....     +.+..+++
T Consensus       345 ~~~~~~~~----------~~~Wdpe~p~----~L~v~t~~-----g~~~~~~~  378 (928)
T PF04762_consen  345 FSSSESVN----------FVKWDPEKPL----RLHVLTSN-----GQYEIYDF  378 (928)
T ss_pred             ccCCCCCC----------ceEECCCCCC----EEEEEecC-----CcEEEEEE
Confidence            3321 122          5889997642    56666655     56655554

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=9.8e-06  Score=68.92  Aligned_cols=170  Identities=16%  Similarity=0.141  Sum_probs=111.6

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +..++.|+-...+-.+|+.     +.+..+....-.+.|.-+..  +  ++++.+|...|+|.+-|.++-       +.+
T Consensus       147 ~~~~i~Gg~Q~~li~~Dl~-----~~~e~r~~~v~a~~v~imR~--N--nr~lf~G~t~G~V~LrD~~s~-------~~i  210 (1118)
T KOG1275|consen  147 PSTLIMGGLQEKLIHIDLN-----TEKETRTTNVSASGVTIMRY--N--NRNLFCGDTRGTVFLRDPNSF-------ETI  210 (1118)
T ss_pred             Ccceeecchhhheeeeecc-----cceeeeeeeccCCceEEEEe--c--CcEEEeecccceEEeecCCcC-------cee
Confidence            3456666666667777887     44555444433445766665  3  678899999999999999776       899


Q ss_pred             EEeeeccccEEeEEEeecCCCcEEEEEeC---------CCcEEEEEecCcccccceeEEeeeecccceeeccccccceee
Q 026295          101 KSFESTSTQVLDVQFGVSSTSLKLVAAYS---------DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISA  171 (240)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  171 (240)
                      .++..|++.+..+..    .|+.|++|+.         |..|+|||+|.      ...+..+..+..+           .
T Consensus       211 ht~~aHs~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRm------mral~PI~~~~~P-----------~  269 (1118)
T KOG1275|consen  211 HTFDAHSGSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRM------MRALSPIQFPYGP-----------Q  269 (1118)
T ss_pred             eeeeccccceeeeec----cCCeEEEeecccccccccccchhhhhhhhh------hhccCCcccccCc-----------h
Confidence            999999999987765    6778888874         56689999987      3333333222221           1


Q ss_pred             eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       172 ~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      -+.|+|.-..    .+++.+..     |...+-|..+-.....-...+.   ..++.+..+++|+++.
T Consensus       270 flrf~Psl~t----~~~V~S~s-----Gq~q~vd~~~lsNP~~~~~~v~---p~~s~i~~fDiSsn~~  325 (1118)
T KOG1275|consen  270 FLRFHPSLTT----RLAVTSQS-----GQFQFVDTATLSNPPAGVKMVN---PNGSGISAFDISSNGD  325 (1118)
T ss_pred             hhhhcccccc----eEEEEecc-----cceeeccccccCCCccceeEEc---cCCCcceeEEecCCCc
Confidence            4668887753    78888877     9999988432221111111111   2334588888888763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.43  E-value=4.9e-05  Score=60.41  Aligned_cols=117  Identities=18%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCC-cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDG-TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      +|.+.|.-..+.-+++-++.|..|| .+-|||..     +.+ ...+...-+.|.+++.+++  |+.++.+.....+.+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~-----~~e-~kr~e~~lg~I~av~vs~d--GK~~vvaNdr~el~vi  428 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD-----GGE-VKRIEKDLGNIEAVKVSPD--GKKVVVANDRFELWVI  428 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecC-----Cce-EEEeeCCccceEEEEEcCC--CcEEEEEcCceEEEEE
Confidence            4667788888888888999999999 89999998     333 3444555688999999999  9999998877788888


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC----cEEEEEecC
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG----HVKVYELLD  140 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~v~iw~~~~  140 (240)
                      |+.++       .....-+....-|+.+.|+|  +++++|-+--+|    .|+++|+..
T Consensus       429 didng-------nv~~idkS~~~lItdf~~~~--nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         429 DIDNG-------NVRLIDKSEYGLITDFDWHP--NSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EecCC-------CeeEecccccceeEEEEEcC--CceeEEEecCcceeeeeEEEEecCC
Confidence            88876       33333334557799999999  999999876554    588999875

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=6.9e-06  Score=63.62  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             hcccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +..|...|..++|||..+ ++..++.+..|+|.|+.     +...+..+..+ ..+++.+|..+. .+++..|...|.|.
T Consensus       189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dle-----t~~~vssy~a~-~~~wSC~wDlde-~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLE-----TSCVVSSYIAY-NQIWSCCWDLDE-RHVIYAGLQNGMVL  261 (463)
T ss_pred             ccccchhhhhhccCccccceeeeeccCceEEEEecc-----cceeeeheecc-CCceeeeeccCC-cceeEEeccCceEE
Confidence            345667899999999776 88999999999999998     55667777766 789999998773 67888999999999


Q ss_pred             EEEeeecc
Q 026295           84 LWEEIVED   91 (240)
Q Consensus        84 iwd~~~~~   91 (240)
                      +||++..+
T Consensus       262 vyD~R~~~  269 (463)
T KOG1645|consen  262 VYDMRQPE  269 (463)
T ss_pred             EEEccCCC
Confidence            99998764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.39  E-value=3.2e-05  Score=64.91  Aligned_cols=124  Identities=15%  Similarity=0.205  Sum_probs=91.3

Q ss_pred             chhcccccceEEEEECCCC------------CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC-
Q 026295            3 KAVATLDKGTTSSSWNYCG------------QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF-   69 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~------------~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-   69 (240)
                      +.+..|...|+.++|.|..            -+||++...|.|-+||..     ....+..+..|..++.+++|-+.+. 
T Consensus        49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-----~~s~~~~l~~~~~~~qdl~W~~~rd~  123 (1062)
T KOG1912|consen   49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-----LASVINWLSHSNDSVQDLCWVPARDD  123 (1062)
T ss_pred             hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh-----hhhhhhhhcCCCcchhheeeeeccCc
Confidence            3466788999999998731            268888888999999998     5556677778889999999977532 


Q ss_pred             C-CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           70 G-DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        70 ~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      . ..|+.-.....+.+|+..++       ..+-..........++.+.|. +.+.+..-+..|.|.+.+..
T Consensus       124 Srd~LlaIh~ss~lvLwntdtG-------~k~Wk~~ys~~iLs~f~~DPf-d~rh~~~l~s~g~vl~~~~l  186 (1062)
T KOG1912|consen  124 SRDVLLAIHGSSTLVLWNTDTG-------EKFWKYDYSHEILSCFRVDPF-DSRHFCVLGSKGFVLSCKDL  186 (1062)
T ss_pred             chheeEEecCCcEEEEEEccCC-------ceeeccccCCcceeeeeeCCC-CcceEEEEccCceEEEEecc
Confidence            2 46666666789999998877       555555554456677888886 44456666667877777654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.37  E-value=4.6e-05  Score=60.87  Aligned_cols=188  Identities=13%  Similarity=0.102  Sum_probs=111.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCc---------------EEEEeCCCCCCCcEEEEeEeeecCcc--EE-EEEEcCCCCCC
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGT---------------LSIFDSPDPSSSSFTCNLKTKVHAGA--IL-KVVWVPPEFGD   71 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~---------------i~iw~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~   71 (240)
                      ..|..+.|+|.+++|.+-+..+.               +.+||+.     .+.++..+.....+  .+ -++|+-+  ..
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~-----sg~iv~sf~~~~q~~~~Wp~~k~s~~--D~  144 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIA-----SGMIVFSFNGISQPYLGWPVLKFSID--DK  144 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEecc-----CceeEeeccccCCcccccceeeeeec--ch
Confidence            35788999999999999876554               8899998     66788888765555  44 6788777  56


Q ss_pred             EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEE-----EeCCCcEEEEEecCcccccc
Q 026295           72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVA-----AYSDGHVKVYELLDPLILKN  146 (240)
Q Consensus        72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-----~~~dg~v~iw~~~~~~~~~~  146 (240)
                      +++-. ....+.++++...-.    -.+...++  ...|....|+|..++..|+.     .+.++++++|.+.....   
T Consensus       145 y~ARv-v~~sl~i~e~t~n~~----~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~---  214 (561)
T COG5354         145 YVARV-VGSSLYIHEITDNIE----EHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV---  214 (561)
T ss_pred             hhhhh-ccCeEEEEecCCccc----cCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe---
Confidence            55543 234688999732210    01222222  36788899999545554444     34677888888764211   


Q ss_pred             eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCC----CCC--CeEEEEEeecCCCCcceeEeee
Q 026295          147 WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT----PQL--NSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~----~~~--~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                       .....+-.-         ..|   .+.|++.+.     +|++--..+.    ..+  ..++|+++......   + ++ 
T Consensus       215 -l~tk~lfk~---------~~~---qLkW~~~g~-----~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~---V-~~-  271 (561)
T COG5354         215 -LVTKNLFKV---------SGV---QLKWQVLGK-----YLLVLVMTHTKSNKSYFGESNLYLLRITERSIP---V-EK-  271 (561)
T ss_pred             -eeeeeeEee---------ccc---EEEEecCCc-----eEEEEEEEeeecccceeccceEEEEeecccccc---e-ec-
Confidence             111111111         122   677988887     4433221100    111  45677776633222   1 11 


Q ss_pred             cCCCCCCceEEEEEecCCCC
Q 026295          221 LPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       221 ~~~~h~~~v~~v~~sp~~~~  240 (240)
                         +-.++|.+++|.|.+.|
T Consensus       272 ---~~~~pVhdf~W~p~S~~  288 (561)
T COG5354         272 ---DLKDPVHDFTWEPLSSR  288 (561)
T ss_pred             ---cccccceeeeecccCCc
Confidence               23349999999998754

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=2.9e-06  Score=68.46  Aligned_cols=160  Identities=11%  Similarity=0.093  Sum_probs=97.3

Q ss_pred             EeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295           49 NLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        49 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      +..+.+|...|..+.--.+  .+-+++++.|.+|++|.++....+-..-.+..++..|+.+|..+.|-.  +.+++++  
T Consensus       728 L~nf~GH~~~iRai~AidN--ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~--~lr~i~S--  801 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDN--ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA--DLRSIAS--  801 (1034)
T ss_pred             eecccCcHHHhHHHHhccc--ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee--ccceeee--
Confidence            3456688888877765455  667899999999999999754322222246777888999999999977  7776664  


Q ss_pred             CCCcEEEEEecCcccccceeEEeeee--cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          129 SDGHVKVYELLDPLILKNWQLQAEFQ--NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       129 ~dg~v~iw~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      .||-|++||.--.      .+...+.  .......          .+.--|+-..  ..+++.++..     .+|+++|.
T Consensus       802 cD~giHlWDPFig------r~Laq~~dapk~~a~~----------~ikcl~nv~~--~iliAgcsae-----STVKl~Da  858 (1034)
T KOG4190|consen  802 CDGGIHLWDPFIG------RLLAQMEDAPKEGAGG----------NIKCLENVDR--HILIAGCSAE-----STVKLFDA  858 (1034)
T ss_pred             ccCcceeeccccc------chhHhhhcCcccCCCc----------eeEecccCcc--hheeeeccch-----hhheeeec
Confidence            4788999997542      2221111  1111111          2222232110  1133444555     89999998


Q ss_pred             ecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          207 DEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +...  |+..-.+....+-...+++++-.|.|+
T Consensus       859 Rsce--~~~E~kVcna~~Pna~~R~iaVa~~GN  889 (1034)
T KOG4190|consen  859 RSCE--WTCELKVCNAPGPNALTRAIAVADKGN  889 (1034)
T ss_pred             cccc--ceeeEEeccCCCCchheeEEEeccCcc
Confidence            7643  544333332223333688888887764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=4.1e-07  Score=76.94  Aligned_cols=119  Identities=18%  Similarity=0.136  Sum_probs=88.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-C-Ce
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-D-GS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d-~~   81 (240)
                      .+..|+...+|++|+...++|+.|+-.|.|++|++.     ++........|..+|+.+.=+.+  |..+++.+. . ..
T Consensus      1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-----sG~~e~s~ncH~SavT~vePs~d--gs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-----SGSMEESVNCHQSAVTLVEPSVD--GSTQLTSSSSSSPL 1168 (1516)
T ss_pred             hhhccccceeeEEeecCCceEEeeeccceEEEEEcc-----CccccccccccccccccccccCC--cceeeeeccccCch
Confidence            467788899999999999999999999999999998     66677788899999999886666  776655433 2 25


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      ..+|+...-      +.+..+|.+    -.++.|+.  ..++-+.|+....+.+||+++.
T Consensus      1169 saLW~~~s~------~~~~Hsf~e----d~~vkFsn--~~q~r~~gt~~d~a~~YDvqT~ 1216 (1516)
T KOG1832|consen 1169 SALWDASST------GGPRHSFDE----DKAVKFSN--SLQFRALGTEADDALLYDVQTC 1216 (1516)
T ss_pred             HHHhccccc------cCccccccc----cceeehhh--hHHHHHhcccccceEEEecccC
Confidence            679998542      144555543    46788987  4444445555556899999984

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=9.4e-05  Score=62.76  Aligned_cols=184  Identities=9%  Similarity=0.105  Sum_probs=114.1

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc-EEEEEEcCCCCCCEEEEEecCC-----eEEEEEeee
Q 026295           16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-ILKVVWVPPEFGDAVACICSDG-----SLLLWEEIV   89 (240)
Q Consensus        16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~   89 (240)
                      +|++.+..++.|+.+|.|.+.+-.      .+.+..++.+... |..+.. -+ ...+|++.+.|+     .+++|++..
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s------~~~~~~fqa~~~siv~~L~~-~~-~~~~L~sv~Ed~~~np~llkiw~lek  101 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS------FQLIRGFQAYEQSIVQFLYI-LN-KQNFLFSVGEDEQGNPVLLKIWDLEK  101 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc------ceeeehheecchhhhhHhhc-cc-CceEEEEEeecCCCCceEEEEecccc
Confidence            567889999999999999888764      4556778877777 444433 33 136777777665     489999986


Q ss_pred             ccCCCcccEEE---EEe--ee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           90 EDAQPLQWKLC---KSF--ES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        90 ~~~~~~~~~~~---~~~--~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      .++... -.++   +.+  +.  ...++.+++.+.  +-..+|+|-.+|.|..+.=.-..+  .+....-......+|+ 
T Consensus       102 ~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RD--rgsr~~~~~~~~~pIT-  175 (933)
T KOG2114|consen  102 VDKNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRD--RGSRQDYSHRGKEPIT-  175 (933)
T ss_pred             cCCCCC-cceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhc--cccceeeeccCCCCce-
Confidence            543321 1233   222  22  357788899987  778899999999998875211000  0111111122334444 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                               .+.+..++..    .+.++..      ..|.+|.+.... .  ...   .+..|+..++|.+|++.-
T Consensus       176 ---------gL~~~~d~~s----~lFv~Tt------~~V~~y~l~gr~-p--~~~---~ld~~G~~lnCss~~~~t  226 (933)
T KOG2114|consen  176 ---------GLALRSDGKS----VLFVATT------EQVMLYSLSGRT-P--SLK---VLDNNGISLNCSSFSDGT  226 (933)
T ss_pred             ---------eeEEecCCce----eEEEEec------ceeEEEEecCCC-c--cee---eeccCCccceeeecCCCC
Confidence                     7888777751    2333333      789999998433 1  112   233577789999888753

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.33  E-value=0.00055  Score=51.12  Aligned_cols=167  Identities=16%  Similarity=0.144  Sum_probs=98.3

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC---ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295           15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA---GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED   91 (240)
Q Consensus        15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   91 (240)
                      ++.+.+|++||.- .|..|.|-..+.+   -..++.+.+..+   -.=.-++|+|+  +.+||.+...|+|+++|+... 
T Consensus         3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Dd---f~si~~kcqVpkD~~PQWRkl~WSpD--~tlLa~a~S~G~i~vfdl~g~-   75 (282)
T PF15492_consen    3 LALSSDGKLLAIL-QDQCIEIRSAKDD---FSSIIGKCQVPKDPNPQWRKLAWSPD--CTLLAYAESTGTIRVFDLMGS-   75 (282)
T ss_pred             eeecCCCcEEEEE-eccEEEEEeccCC---chheeEEEecCCCCCchheEEEECCC--CcEEEEEcCCCeEEEEecccc-
Confidence            5667899888876 5678888776543   112222222222   23467999999  999999999999999998752 


Q ss_pred             CCCcccEEEEEeee-------ccccEEeEEEeecC-C---CcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           92 AQPLQWKLCKSFES-------TSTQVLDVQFGVSS-T---SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        92 ~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~-~---~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                             .+..+..       ....|..+.|.+.. +   ...|++-+.+|.++=|-+... ....++....+.-...  
T Consensus        76 -------~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~g-t~q~y~e~hsfsf~~~--  145 (282)
T PF15492_consen   76 -------ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVG-TNQGYQENHSFSFSSH--  145 (282)
T ss_pred             -------eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcc-cCCcceeeEEEEeccc--
Confidence                   2333322       23566677775421 1   224777778888887776321 1112333333322110  


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCC------CeEEEEEeec
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQL------NSSKVWEFDE  208 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~------~~i~iw~~~~  208 (240)
                           ..-.++++.|+|...     +|++|+.......      .-+..|.+-+
T Consensus       146 -----yp~Gi~~~vy~p~h~-----LLlVgG~~~~~~~~s~a~~~GLtaWRiL~  189 (282)
T PF15492_consen  146 -----YPHGINSAVYHPKHR-----LLLVGGCEQNQDGMSKASSCGLTAWRILS  189 (282)
T ss_pred             -----CCCceeEEEEcCCCC-----EEEEeccCCCCCccccccccCceEEEEcC
Confidence                 112334899999976     7777776432211      2466676643

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.30  E-value=0.00087  Score=52.87  Aligned_cols=67  Identities=10%  Similarity=-0.004  Sum_probs=50.5

Q ss_pred             ECCCCCEEEEEeC----------CCcEEEEeCCCCCCCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEEe-c
Q 026295           17 WNYCGQRLATGST----------DGTLSIFDSPDPSSSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACIC-S   78 (240)
Q Consensus        17 ~s~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~-~   78 (240)
                      ++|+|+.|.++..          +..|.+||..     +++.+..+..-       ......+.++|+  |++++... .
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~-----t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d--gk~l~V~n~~  125 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ-----THLPIADIELPEGPRFLVGTYPWMTSLTPD--NKTLLFYQFS  125 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECc-----cCcEEeEEccCCCchhhccCccceEEECCC--CCEEEEecCC
Confidence            8999998877765          6899999998     66777666521       122347889999  99888766 3


Q ss_pred             -CCeEEEEEeeec
Q 026295           79 -DGSLLLWEEIVE   90 (240)
Q Consensus        79 -d~~v~iwd~~~~   90 (240)
                       +..|.+.|+..+
T Consensus       126 p~~~V~VvD~~~~  138 (352)
T TIGR02658       126 PSPAVGVVDLEGK  138 (352)
T ss_pred             CCCEEEEEECCCC
Confidence             678999998765

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.27  E-value=0.00031  Score=57.17  Aligned_cols=114  Identities=8%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             ccccceEEEEECCCCCEEEEE-eCC--CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC--
Q 026295            7 TLDKGTTSSSWNYCGQRLATG-STD--GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG--   80 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~-~~d--~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~--   80 (240)
                      ...+.....+|+|||+.|+.. +.+  ..|.++++...   ..+.   +..+........|+|+  |+.|+..+ ..+  
T Consensus       230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g---~~~~---LT~~~~~d~~p~~SPD--G~~I~F~Sdr~g~~  301 (419)
T PRK04043        230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK---TLTQ---ITNYPGIDVNGNFVED--DKRIVFVSDRLGYP  301 (419)
T ss_pred             cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC---cEEE---cccCCCccCccEECCC--CCEEEEEECCCCCc
Confidence            344556678899999876654 334  45666676532   2222   2222332345689999  88666554 344  


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---------CcEEEEEecC
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---------GHVKVYELLD  140 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~  140 (240)
                      .|.+.|+..+       ...+..... .  ....|+|  +|.+++.....         ..|.+.|+.+
T Consensus       302 ~Iy~~dl~~g-------~~~rlt~~g-~--~~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~  358 (419)
T PRK04043        302 NIFMKKLNSG-------SVEQVVFHG-K--NNSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNS  358 (419)
T ss_pred             eEEEEECCCC-------CeEeCccCC-C--cCceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence            4555555443       221111111 1  1248999  99988776643         2466666654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.25  E-value=7.2e-05  Score=65.68  Aligned_cols=176  Identities=15%  Similarity=0.242  Sum_probs=101.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCC----CCC--------------CCcEEEEeEeeecC-------------
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSP----DPS--------------SSSFTCNLKTKVHA-------------   56 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~----~~~--------------~~~~~~~~~~~~h~-------------   56 (240)
                      .++.|.+++||||++.++..+.++++.+-...    ...              .+=++.-..|.+..             
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek  187 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEK  187 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccc
Confidence            45689999999999999999888887654321    000              00001111122111             


Q ss_pred             --------ccEEEEEEcCCCCCCEEEEEe----cC-CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE
Q 026295           57 --------GAILKVVWVPPEFGDAVACIC----SD-GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK  123 (240)
Q Consensus        57 --------~~v~~~~~~~~~~~~~l~s~~----~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  123 (240)
                              ..=.+|.|--+  |++|++..    .+ ..|++||-..        ..-..-.....--.+++|-|  .|..
T Consensus       188 ~~~~~~~~~~~~~IsWRgD--g~~fAVs~~~~~~~~RkirV~drEg--------~Lns~se~~~~l~~~LsWkP--sgs~  255 (1265)
T KOG1920|consen  188 ALEQIEQDDHKTSISWRGD--GEYFAVSFVESETGTRKIRVYDREG--------ALNSTSEPVEGLQHSLSWKP--SGSL  255 (1265)
T ss_pred             cccchhhccCCceEEEccC--CcEEEEEEEeccCCceeEEEecccc--------hhhcccCcccccccceeecC--CCCe
Confidence                    11235899888  99998832    23 7899999762        11111111223335789988  8887


Q ss_pred             EEEEe---CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEE---EecCCCCC
Q 026295          124 LVAAY---SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL---GFNSDTPQ  197 (240)
Q Consensus       124 l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~---~~~dd~~~  197 (240)
                      +++-.   +|+.|.+|..+.   +..++....+......+          ..++|+.++.     +||+   ....    
T Consensus       256 iA~iq~~~sd~~IvffErNG---L~hg~f~l~~p~de~~v----------e~L~Wns~sd-----iLAv~~~~~e~----  313 (1265)
T KOG1920|consen  256 IAAIQCKTSDSDIVFFERNG---LRHGEFVLPFPLDEKEV----------EELAWNSNSD-----ILAVVTSNLEN----  313 (1265)
T ss_pred             EeeeeecCCCCcEEEEecCC---ccccccccCCcccccch----------heeeecCCCC-----ceeeeeccccc----
Confidence            77653   566788887653   11122111111111112          3899999987     7877   4443    


Q ss_pred             CCeEEEEEeecCCCCcceeEeee
Q 026295          198 LNSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       198 ~~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                       ..|++|...+..  |.+..++.
T Consensus       314 -~~v~lwt~~Nyh--WYLKq~l~  333 (1265)
T KOG1920|consen  314 -SLVQLWTTGNYH--WYLKQELQ  333 (1265)
T ss_pred             -ceEEEEEecCeE--EEEEEEEe
Confidence             569999876643  66655554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.24  E-value=0.001  Score=50.22  Aligned_cols=180  Identities=14%  Similarity=0.133  Sum_probs=100.2

Q ss_pred             eEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--e-cCccEEEEEEcCCCCCCEEEEEecC--------
Q 026295           12 TTSSSWN-YCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--V-HAGAILKVVWVPPEFGDAVACICSD--------   79 (240)
Q Consensus        12 v~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~~~l~s~~~d--------   79 (240)
                      ...+++. +++ .|+.+... .+.++|....   ..+.+....  . .....+++++.++  |.+.++....        
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g---~~~~~~~~~~~~~~~~~~ND~~vd~~--G~ly~t~~~~~~~~~~~~  114 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSG-GIAVVDPDTG---KVTVLADLPDGGVPFNRPNDVAVDPD--GNLYVTDSGGGGASGIDP  114 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETT-CEEEEETTTT---EEEEEEEEETTCSCTEEEEEEEE-TT--S-EEEEEECCBCTTCGGS
T ss_pred             CceEEEEccCC-EEEEEEcC-ceEEEecCCC---cEEEEeeccCCCcccCCCceEEEcCC--CCEEEEecCCCccccccc
Confidence            5677777 554 55555554 4556687633   334444442  1 3456889999999  9877765543        


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCccc-ccceeEEeeeeccc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLI-LKNWQLQAEFQNAI  157 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~-~~~~~~~~~~~~~~  157 (240)
                      +.|..++.. +       +..... ..-.....|+|+|  +++.|. +-+..+.|..+++..... .........+....
T Consensus       115 g~v~~~~~~-~-------~~~~~~-~~~~~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  183 (246)
T PF08450_consen  115 GSVYRIDPD-G-------KVTVVA-DGLGFPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP  183 (246)
T ss_dssp             EEEEEEETT-S-------EEEEEE-EEESSEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS
T ss_pred             cceEEECCC-C-------eEEEEe-cCcccccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCC
Confidence            334444443 1       322222 2335568999999  887664 556778888888864321 11111122222111


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe-c
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA-L  236 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p  236 (240)
                      ....          .++++.++.     +.++....     +.|.+++.+ ++    ....+.....   .+++++|. |
T Consensus       184 g~pD----------G~~vD~~G~-----l~va~~~~-----~~I~~~~p~-G~----~~~~i~~p~~---~~t~~~fgg~  235 (246)
T PF08450_consen  184 GYPD----------GLAVDSDGN-----LWVADWGG-----GRIVVFDPD-GK----LLREIELPVP---RPTNCAFGGP  235 (246)
T ss_dssp             CEEE----------EEEEBTTS------EEEEEETT-----TEEEEEETT-SC----EEEEEE-SSS---SEEEEEEEST
T ss_pred             cCCC----------cceEcCCCC-----EEEEEcCC-----CEEEEECCC-cc----EEEEEcCCCC---CEEEEEEECC
Confidence            1122          688888886     55555555     899999876 32    2333333322   78999994 4


Q ss_pred             C
Q 026295          237 N  237 (240)
Q Consensus       237 ~  237 (240)
                      +
T Consensus       236 ~  236 (246)
T PF08450_consen  236 D  236 (246)
T ss_dssp             T
T ss_pred             C
Confidence            4

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.2e-05  Score=62.43  Aligned_cols=86  Identities=13%  Similarity=0.202  Sum_probs=68.3

Q ss_pred             EEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295           46 FTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        46 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  124 (240)
                      .+.+..+.+|...|.+++|+|.  .+ ++..++.+..|+|.|+++.       ..+..+..+ ..+++++|+-+ +..++
T Consensus       183 fkssq~lp~~g~~IrdlafSp~--~~GLl~~asl~nkiki~dlet~-------~~vssy~a~-~~~wSC~wDld-e~h~I  251 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPF--NEGLLGLASLGNKIKIMDLETS-------CVVSSYIAY-NQIWSCCWDLD-ERHVI  251 (463)
T ss_pred             cchhhcccccchhhhhhccCcc--ccceeeeeccCceEEEEecccc-------eeeeheecc-CCceeeeeccC-Cccee
Confidence            3344455577788999999998  55 6778889999999999876       666777666 88999999873 35578


Q ss_pred             EEEeCCCcEEEEEecCcc
Q 026295          125 VAAYSDGHVKVYELLDPL  142 (240)
Q Consensus       125 ~~~~~dg~v~iw~~~~~~  142 (240)
                      .+|-.+|.|.|||++.++
T Consensus       252 YaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             EEeccCceEEEEEccCCC
Confidence            888899999999999763

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.20  E-value=4.9e-07  Score=73.77  Aligned_cols=171  Identities=13%  Similarity=0.124  Sum_probs=103.5

Q ss_pred             cccccceEEEEECC-CCCEEEEEe----CCCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecC
Q 026295            6 ATLDKGTTSSSWNY-CGQRLATGS----TDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         6 ~~h~~~v~~~~~s~-~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      ..|....++++|++ |.+.||.|-    .|..+.|||+...-. ..+....+.+ ......+++|-.+  .+++.+|...
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~lt-vPke~~~fs~~~l~gqns~cwlrd--~klvlaGm~s  175 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLT-VPKESPLFSSSTLDGQNSVCWLRD--TKLVLAGMTS  175 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccC-CCccccccccccccCccccccccC--cchhhccccc
Confidence            34566788999998 567788773    456799999973200 0011111111 2344568899765  7888888888


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE-ecCcccccceeEEeeeecccc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE-LLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~-~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      ..++++|++..        +.....-.+..+..+..+|- .+.++++ ..||.|.+|| .+..+     .+.+.+.....
T Consensus       176 r~~~ifdlRqs--------~~~~~svnTk~vqG~tVdp~-~~nY~cs-~~dg~iAiwD~~rnie-----npl~~i~~~~N  240 (783)
T KOG1008|consen  176 RSVHIFDLRQS--------LDSVSSVNTKYVQGITVDPF-SPNYFCS-NSDGDIAIWDTYRNIE-----NPLQIILRNEN  240 (783)
T ss_pred             chhhhhhhhhh--------hhhhhhhhhhhcccceecCC-CCCceec-cccCceeeccchhhhc-----cHHHHHhhCCC
Confidence            89999999742        22222223456677777763 3444544 4599999999 43321     11111111111


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      +   ..+   ....++|+|....    ++++...|.    ++|++|+...
T Consensus       241 ~---~~~---~l~~~aycPtrtg----lla~l~RdS----~tIrlydi~~  276 (783)
T KOG1008|consen  241 K---KPK---QLFALAYCPTRTG----LLAVLSRDS----ITIRLYDICV  276 (783)
T ss_pred             C---ccc---ceeeEEeccCCcc----hhhhhccCc----ceEEEecccc
Confidence            0   000   1128999998864    788888776    8999999854

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.17  E-value=0.00016  Score=57.95  Aligned_cols=154  Identities=16%  Similarity=0.252  Sum_probs=96.8

Q ss_pred             EEEECCCCCEEEEEe-----------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE--ecCC
Q 026295           14 SSSWNYCGQRLATGS-----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI--CSDG   80 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~-----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~--~~d~   80 (240)
                      .+.|.+.|++|..=-           ....+.|+++.+.      .+.......++|.+.+|.|.  ++.|++.  -.+-
T Consensus       227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~------~i~V~~~~~~pVhdf~W~p~--S~~F~vi~g~~pa  298 (561)
T COG5354         227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER------SIPVEKDLKDPVHDFTWEPL--SSRFAVISGYMPA  298 (561)
T ss_pred             EEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc------ccceeccccccceeeeeccc--CCceeEEeccccc
Confidence            467888887654421           1134666766532      11112245789999999999  7766654  4677


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeeccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .+.++|++.        .....+.  ...=..+.|+|  .+++++.++.|   |.+.+||....     ..+...+.+..
T Consensus       299 ~~s~~~lr~--------Nl~~~~P--e~~rNT~~fsp--~~r~il~agF~nl~gni~i~~~~~r-----f~~~~~~~~~n  361 (561)
T COG5354         299 SVSVFDLRG--------NLRFYFP--EQKRNTIFFSP--HERYILFAGFDNLQGNIEIFDPAGR-----FKVAGAFNGLN  361 (561)
T ss_pred             ceeeccccc--------ceEEecC--CcccccccccC--cccEEEEecCCccccceEEeccCCc-----eEEEEEeecCC
Confidence            899999976        4333333  34445678999  89998887755   67899998652     44443443332


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCC-CCCCeEEEEEeecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT-PQLNSSKVWEFDEA  209 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~-~~~~~i~iw~~~~~  209 (240)
                      .            .-+.|+|++.     ++.++...-- ..+..|.|||+...
T Consensus       362 ~------------s~~~wspd~q-----F~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         362 T------------SYCDWSPDGQ-----FYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             c------------eEeeccCCce-----EEEecCCCcccccCcceEEEEecCc
Confidence            1            1446999987     6666643100 11188999998653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.16  E-value=0.00054  Score=44.07  Aligned_cols=103  Identities=18%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             eEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           12 TTSSSWNY---CG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        12 v~~~~~s~---~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      |+++++..   +| +.|++|+.|..||||+-.       ..+..+.. ...|..++-...   ..|+.+..+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------e~~~Ei~e-~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------EIVAEITE-TDKVTSLCSLGG---GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------cEEEEEec-ccceEEEEEcCC---CEEEEEecCCEEEEEeC
Confidence            55666544   44 589999999999999876       46666665 466888877564   66888999999999986


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEee-cCCC-cEEEEEeCCCcEEE
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGV-SSTS-LKLVAAYSDGHVKV  135 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-~~l~~~~~dg~v~i  135 (240)
                      ..     ..|+    .+.. ..+.++.+.. ..+| ..|++|-.+|.|-+
T Consensus        71 ~~-----RlWR----iKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   71 SQ-----RLWR----IKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             cc-----eeee----eccC-CCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence            43     2222    2332 3355555543 1122 25888888998753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.4e-05  Score=61.63  Aligned_cols=183  Identities=13%  Similarity=0.101  Sum_probs=113.1

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC----CEEEEEec
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG----DAVACICS   78 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~----~~l~s~~~   78 (240)
                      -+..|-..|.+++.+.+|.++.+.+. |..++++|+..-     ..+..++- ...-..+.|... .|    .+-++.-.
T Consensus        48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~-----DminmiKL-~~lPg~a~wv~s-kGd~~s~IAVs~~~  120 (558)
T KOG0882|consen   48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF-----DMINMIKL-VDLPGFAEWVTS-KGDKISLIAVSLFK  120 (558)
T ss_pred             hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc-----chhhhccc-ccCCCceEEecC-CCCeeeeEEeeccc
Confidence            35567778888999999999999777 999999999743     22211211 111123334322 13    23334456


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      ++.+.++|-.....     +....-.-|..+|..+.+.+  .+..+++....|.|.-|....+.+-....+...++ +..
T Consensus       121 sg~i~VvD~~~d~~-----q~~~fkklH~sPV~~i~y~q--a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K-~eT  192 (558)
T KOG0882|consen  121 SGKIFVVDGFGDFC-----QDGYFKKLHFSPVKKIRYNQ--AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK-HET  192 (558)
T ss_pred             CCCcEEECCcCCcC-----ccceecccccCceEEEEeec--cccceeeccccceeEeecCCCcccCcccccccccc-ccc
Confidence            78899999765421     22222335889999999988  88888888888999999887321111111111111 111


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                      ..-.+.+......++.|+|++.     .+++-+.|     .+|+++++.++..
T Consensus       193 dLy~f~K~Kt~pts~Efsp~g~-----qistl~~D-----rkVR~F~~KtGkl  235 (558)
T KOG0882|consen  193 DLYGFPKAKTEPTSFEFSPDGA-----QISTLNPD-----RKVRGFVFKTGKL  235 (558)
T ss_pred             hhhcccccccCccceEEccccC-----cccccCcc-----cEEEEEEeccchh
Confidence            1111112222334899999998     68888877     9999999988753

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=2.9e-05  Score=61.13  Aligned_cols=201  Identities=14%  Similarity=0.047  Sum_probs=123.7

Q ss_pred             CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-C
Q 026295            1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-D   79 (240)
Q Consensus         1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d   79 (240)
                      |..+-..|.+.|+.+... ..+++.+++.||.++.|......  -.+.+..+..|.+.|.+++.+-+  +.++.+.+. |
T Consensus         1 ~yeksymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~is--GvEfVKhFraHL~~I~sl~~S~d--g~L~~Sv~d~D   75 (558)
T KOG0882|consen    1 MYEKSYMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRIS--GVEFVKHFRAHLGVILSLAVSYD--GWLFRSVEDPD   75 (558)
T ss_pred             CcchhhcccceeeeEeee-hhheEEeeecchhhhhcCCCCcc--ceeehhhhHHHHHHHHhhhcccc--ceeEeeccCcc
Confidence            344556788888776543 45799999999999999876421  23456667788899999999888  999999777 9


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC----cEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS----LKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      ..++++|+.+-       ..+..++.. ..-..+.|... .|    ..-++.-.++.+.++|-....    .+....-..
T Consensus        76 hs~KvfDvEn~-------DminmiKL~-~lPg~a~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d~----~q~~~fkkl  142 (558)
T KOG0882|consen   76 HSVKVFDVENF-------DMINMIKLV-DLPGFAEWVTS-KGDKISLIAVSLFKSGKIFVVDGFGDF----CQDGYFKKL  142 (558)
T ss_pred             cceeEEEeecc-------chhhhcccc-cCCCceEEecC-CCCeeeeEEeecccCCCcEEECCcCCc----Cccceeccc
Confidence            99999999764       222222211 11122333321 23    222333467889999976531    122222234


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC------CCCccee--EeeecCCCCCC
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA------HNRWLPV--AELALPEDRSD  227 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~------~~~~~~~--~~~~~~~~h~~  227 (240)
                      |..++.          .+.++|.+.     .+++....     |.|.-|.....      ...|.+.  ..+......-.
T Consensus       143 H~sPV~----------~i~y~qa~D-----s~vSiD~~-----gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt  202 (558)
T KOG0882|consen  143 HFSPVK----------KIRYNQAGD-----SAVSIDIS-----GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKT  202 (558)
T ss_pred             ccCceE----------EEEeecccc-----ceeecccc-----ceeEeecCCCcccCccccccccccccchhhccccccc
Confidence            555555          788888887     56666555     89999988741      1112111  11111112333


Q ss_pred             ceEEEEEecCCC
Q 026295          228 EVYAVAWALNIG  239 (240)
Q Consensus       228 ~v~~v~~sp~~~  239 (240)
                      ...++.|+|++.
T Consensus       203 ~pts~Efsp~g~  214 (558)
T KOG0882|consen  203 EPTSFEFSPDGA  214 (558)
T ss_pred             CccceEEccccC
Confidence            678899999873

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.13  E-value=0.00072  Score=51.76  Aligned_cols=161  Identities=12%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             EEECCCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-------CCe-
Q 026295           15 SSWNYCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-------DGS-   81 (240)
Q Consensus        15 ~~~s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-------d~~-   81 (240)
                      -.||++|++|.+.-.|     |.|-|||...    ..+.+..+..|.-.-..+.+.|+  |..|+.+.-       .|. 
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~----~~~ri~E~~s~GIGPHel~l~pD--G~tLvVANGGI~Thpd~GR~  129 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR----GYRRIGEFPSHGIGPHELLLMPD--GETLVVANGGIETHPDSGRA  129 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcC----CcEEEeEecCCCcChhhEEEcCC--CCEEEEEcCCCccCcccCce
Confidence            5799999999987544     7899999983    56778888887777788999999  877776521       122 


Q ss_pred             ----------EEEEEeeeccCCCcccEEEEE--e--eeccccEEeEEEeecCCCcEEEEEeCCCc-------EEEEEecC
Q 026295           82 ----------LLLWEEIVEDAQPLQWKLCKS--F--ESTSTQVLDVQFGVSSTSLKLVAAYSDGH-------VKVYELLD  140 (240)
Q Consensus        82 ----------v~iwd~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-------v~iw~~~~  140 (240)
                                +.+-|..++       +.+..  +  ..+...++.+++.+  +|..++..-..|.       |-+++...
T Consensus       130 kLNl~tM~psL~~ld~~sG-------~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~  200 (305)
T PF07433_consen  130 KLNLDTMQPSLVYLDARSG-------ALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGG  200 (305)
T ss_pred             ecChhhcCCceEEEecCCC-------ceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCC
Confidence                      222222222       33333  3  23667788888877  7764333322221       22222111


Q ss_pred             cccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          141 PLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                              ....+.........+.   -.+-+|++++++.     ++++.+---    +.+.+||..++.
T Consensus       201 --------~~~~~~~p~~~~~~l~---~Y~gSIa~~~~g~-----~ia~tsPrG----g~~~~~d~~tg~  250 (305)
T PF07433_consen  201 --------ALRLLPAPEEQWRRLN---GYIGSIAADRDGR-----LIAVTSPRG----GRVAVWDAATGR  250 (305)
T ss_pred             --------cceeccCChHHHHhhC---CceEEEEEeCCCC-----EEEEECCCC----CEEEEEECCCCC
Confidence                    1111111100000011   1223899999986     555554332    899999987764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.10  E-value=0.002  Score=48.56  Aligned_cols=139  Identities=12%  Similarity=0.129  Sum_probs=82.5

Q ss_pred             cceEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCC
Q 026295           10 KGTTSSSWNYCGQRLATGSTD--------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDG   80 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d--------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~   80 (240)
                      ...+.++++++|++.++....        |.|..++.. .   .  . ..+...-...+.|+|+|+  ++.|+ +-+..+
T Consensus        86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~---~--~-~~~~~~~~~pNGi~~s~d--g~~lyv~ds~~~  156 (246)
T PF08450_consen   86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G---K--V-TVVADGLGFPNGIAFSPD--GKTLYVADSFNG  156 (246)
T ss_dssp             EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S---E--E-EEEEEEESSEEEEEEETT--SSEEEEEETTTT
T ss_pred             CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C---e--E-EEEecCcccccceEECCc--chheeecccccc
Confidence            367889999999988776644        345555554 1   2  1 222222455789999999  88665 555677


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|..+++..........+....+.........+++..  +|++.++....+.|.+++..       ++++..+......+
T Consensus       157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--~G~l~va~~~~~~I~~~~p~-------G~~~~~i~~p~~~~  227 (246)
T PF08450_consen  157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--DGNLWVADWGGGRIVVFDPD-------GKLLREIELPVPRP  227 (246)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT--TS-EEEEEETTTEEEEEETT-------SCEEEEEE-SSSSE
T ss_pred             eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC--CCCEEEEEcCCCEEEEECCC-------ccEEEEEcCCCCCE
Confidence            8888888643210000012222222223477899987  99988877788999999876       35555555443333


Q ss_pred             eccccccceeeeEEEe
Q 026295          161 TMFRKASCISASISWN  176 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~  176 (240)
                      .          +++|-
T Consensus       228 t----------~~~fg  233 (246)
T PF08450_consen  228 T----------NCAFG  233 (246)
T ss_dssp             E----------EEEEE
T ss_pred             E----------EEEEE
Confidence            3          77883

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.10  E-value=0.00049  Score=60.74  Aligned_cols=192  Identities=16%  Similarity=0.158  Sum_probs=109.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ++.|.++.|..+...++.+..+|.|.+-|....   ..+++.   .-...|.+++|+|+  .+.++..+...++.+-+..
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~---~~eivg---~vd~GI~aaswS~D--ee~l~liT~~~tll~mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETL---ELEIVG---NVDNGISAASWSPD--EELLALITGRQTLLFMTKD  139 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccc---ceeeee---eccCceEEEeecCC--CcEEEEEeCCcEEEEEecc
Confidence            358999999999999999999999999877632   223333   23567999999999  8888888777776554421


Q ss_pred             e----cc---------C---CCcccEEEEEeeec---------------------cccEEeEEEeecCCCcEEEEE----
Q 026295           89 V----ED---------A---QPLQWKLCKSFEST---------------------STQVLDVQFGVSSTSLKLVAA----  127 (240)
Q Consensus        89 ~----~~---------~---~~~~~~~~~~~~~~---------------------~~~v~~~~~~~~~~~~~l~~~----  127 (240)
                      -    ..         +   ...-.+....|.+.                     ...=.+|.|--  +|.++++.    
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~  217 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG--DGEYFAVSFVES  217 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc--CCcEEEEEEEec
Confidence            0    00         0   00000111122210                     11123588855  99988873    


Q ss_pred             -eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          128 -YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       128 -~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                       .....|++||...  .+...........+               +++|-|.+.     ++++-....+.  +.|.+|..
T Consensus       218 ~~~~RkirV~drEg--~Lns~se~~~~l~~---------------~LsWkPsgs-----~iA~iq~~~sd--~~IvffEr  273 (1265)
T KOG1920|consen  218 ETGTRKIRVYDREG--ALNSTSEPVEGLQH---------------SLSWKPSGS-----LIAAIQCKTSD--SDIVFFER  273 (1265)
T ss_pred             cCCceeEEEecccc--hhhcccCccccccc---------------ceeecCCCC-----eEeeeeecCCC--CcEEEEec
Confidence             3337899999762  11111111111111               899999886     66665432100  67888875


Q ss_pred             ecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          207 DEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ..-. .-......+..+   .+|..++|+.++
T Consensus       274 NGL~-hg~f~l~~p~de---~~ve~L~Wns~s  301 (1265)
T KOG1920|consen  274 NGLR-HGEFVLPFPLDE---KEVEELAWNSNS  301 (1265)
T ss_pred             CCcc-ccccccCCcccc---cchheeeecCCC
Confidence            4321 111111222222   248999999876

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.10  E-value=1.3e-05  Score=60.29  Aligned_cols=129  Identities=15%  Similarity=0.123  Sum_probs=85.6

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-----ccEEEEEEcCCCCCCEEEEEecCC
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-----GAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      ..|.--|.++.|+.+...++++. |-.|.+|++..... . -.+..++.|.     .-|++..|+|. .-..+.-.+..|
T Consensus       169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~-s-FnIVDiKP~nmeeLteVItSaeFhp~-~cn~fmYSsSkG  244 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDG-S-FNIVDIKPHNMEELTEVITSAEFHPE-MCNVFMYSSSKG  244 (460)
T ss_pred             ccceeEeeeeeecCchheeeecc-ceeeeeccccccCC-c-eEEEeccCccHHHHHHHHhhcccCHh-HcceEEEecCCC
Confidence            35777889999999998888874 57899999986532 1 2233344443     34788899886 235566667789


Q ss_pred             eEEEEEeeecc---CCCccc------EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           81 SLLLWEEIVED---AQPLQW------KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        81 ~v~iwd~~~~~---~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      .|++-|++...   +....+      ....-+.+-...|..+.|++  +|+++++-.. -+|++||.+..
T Consensus       245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~--ngryIlsRdy-ltvkiwDvnm~  311 (460)
T COG5170         245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD--NGRYILSRDY-LTVKIWDVNMA  311 (460)
T ss_pred             cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC--CCcEEEEecc-ceEEEEecccc
Confidence            99999998431   000000      00011122346778899999  9998887765 48999999864

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.07  E-value=0.00033  Score=56.90  Aligned_cols=101  Identities=14%  Similarity=0.186  Sum_probs=60.1

Q ss_pred             ccEEeEEEeecCCCcEEEEEeC---CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCC
Q 026295          108 TQVLDVQFGVSSTSLKLVAAYS---DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQG  184 (240)
Q Consensus       108 ~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~  184 (240)
                      ..|...+|.|  .|..+++-+.   ..++.+|.+.+  ....+.++..+..          ..|  |.+.|+|.|.    
T Consensus       446 e~vi~FaWEP--~gdkF~vi~g~~~k~tvsfY~~e~--~~~~~~lVk~~dk----------~~~--N~vfwsPkG~----  505 (698)
T KOG2314|consen  446 ESVIAFAWEP--HGDKFAVISGNTVKNTVSFYAVET--NIKKPSLVKELDK----------KFA--NTVFWSPKGR----  505 (698)
T ss_pred             hheeeeeecc--CCCeEEEEEccccccceeEEEeec--CCCchhhhhhhcc----------ccc--ceEEEcCCCc----
Confidence            5567788989  7776655442   35788888874  1223444444322          223  3899999997    


Q ss_pred             ceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          185 SSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       185 ~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                       .++++.--.  ..|.+..||.+-.......      +..|. ..+.+.|.|.|
T Consensus       506 -fvvva~l~s--~~g~l~F~D~~~a~~k~~~------~~eh~-~at~veWDPtG  549 (698)
T KOG2314|consen  506 -FVVVAALVS--RRGDLEFYDTDYADLKDTA------SPEHF-AATEVEWDPTG  549 (698)
T ss_pred             -EEEEEEecc--cccceEEEecchhhhhhcc------Ccccc-ccccceECCCC
Confidence             666654220  1178999998753222111      11232 56888999876

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.02  E-value=0.00023  Score=64.34  Aligned_cols=114  Identities=11%  Similarity=0.072  Sum_probs=77.5

Q ss_pred             eEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEe-----------Eeeec--------CccEEEEEEcCCCCCC
Q 026295           12 TTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNL-----------KTKVH--------AGAILKVVWVPPEFGD   71 (240)
Q Consensus        12 v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----------~~~~h--------~~~v~~~~~~~~~~~~   71 (240)
                      ...++|+|+++ ++++-+.++.|++||+....   ...+.           .+-..        -.....++++++  |.
T Consensus       742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~---~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d--G~  816 (1057)
T PLN02919        742 PSGISLSPDLKELYIADSESSSIRALDLKTGG---SRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD--GQ  816 (1057)
T ss_pred             ccEEEEeCCCCEEEEEECCCCeEEEEECCCCc---EEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCC--Cc
Confidence            45699999998 44555667899999987431   11110           00000        112357889888  88


Q ss_pred             EEEEEecCCeEEEEEeeeccCCCcccEEEEEeee--------------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295           72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES--------------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE  137 (240)
Q Consensus        72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~--------------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~  137 (240)
                      ++++-..++.|++||..++       ... .+.+              .-.....+++++  +|+.+++-+.++.|++||
T Consensus       817 LYVADs~N~rIrviD~~tg-------~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~--dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        817 IYVADSYNHKIKKLDPATK-------RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGE--NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             EEEEECCCCEEEEEECCCC-------eEE-EEeccCCcCCCCCcccccccCCceEEEEeC--CCCEEEEECCCCEEEEEE
Confidence            8888888999999998654       222 2111              112467889988  899888888999999999


Q ss_pred             ecC
Q 026295          138 LLD  140 (240)
Q Consensus       138 ~~~  140 (240)
                      +.+
T Consensus       887 ~~~  889 (1057)
T PLN02919        887 LNK  889 (1057)
T ss_pred             CCC
Confidence            976

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=3.5e-06  Score=71.51  Aligned_cols=150  Identities=7%  Similarity=0.039  Sum_probs=103.8

Q ss_pred             EEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEE
Q 026295           47 TCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVA  126 (240)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  126 (240)
                      +....+..|+...++++|+-.  .+.|+.|+..|.|+++++..+       ........|...|+.+.=+.  +|..+++
T Consensus      1092 r~w~~frd~~~~fTc~afs~~--~~hL~vG~~~Geik~~nv~sG-------~~e~s~ncH~SavT~vePs~--dgs~~Lt 1160 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGG--TNHLAVGSHAGEIKIFNVSSG-------SMEESVNCHQSAVTLVEPSV--DGSTQLT 1160 (1516)
T ss_pred             ccchhhhccccceeeEEeecC--CceEEeeeccceEEEEEccCc-------cccccccccccccccccccC--Ccceeee
Confidence            445667788889999999988  889999999999999999887       66777788999999886655  7776655


Q ss_pred             EeCCC--cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          127 AYSDG--HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       127 ~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                      .+.-.  -..+|++...     +...+.+....              ++.|+....     .-+.|...     ....||
T Consensus      1161 sss~S~PlsaLW~~~s~-----~~~~Hsf~ed~--------------~vkFsn~~q-----~r~~gt~~-----d~a~~Y 1211 (1516)
T KOG1832|consen 1161 SSSSSSPLSALWDASST-----GGPRHSFDEDK--------------AVKFSNSLQ-----FRALGTEA-----DDALLY 1211 (1516)
T ss_pred             eccccCchHHHhccccc-----cCccccccccc--------------eeehhhhHH-----HHHhcccc-----cceEEE
Confidence            54332  4678998752     44444443321              677876643     33444444     579999


Q ss_pred             EeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      |.++.....++.....+   .+-.-+.+.|||+..
T Consensus      1212 DvqT~~~l~tylt~~~~---~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1212 DVQTCSPLQTYLTDTVT---SSYSNNLAHFSPCDT 1243 (1516)
T ss_pred             ecccCcHHHHhcCcchh---hhhhccccccCCCcc
Confidence            99998765553322221   122347788888753

>smart00320 WD40 WD40 repeats

Probab=97.99  E-value=3.7e-05  Score=38.95  Aligned_cols=38  Identities=29%  Similarity=0.560  Sum_probs=33.4

Q ss_pred             EEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295           47 TCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus        47 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      +++..+..|...|.++.|.+.  +.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPD--GKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCC--CCEEEEecCCCeEEEcC
Confidence            456667788899999999998  89999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00016  Score=60.91  Aligned_cols=147  Identities=12%  Similarity=0.157  Sum_probs=98.4

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      .+.|++++  +++|+-|.-+|.|++++...+      + .+...|...      ...  |.++++|+.||+|.|-.+-+.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~------~-~~~~~~s~~------~~~--Gey~asCS~DGkv~I~sl~~~  103 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN------P-KTNFDHSSS------ILE--GEYVASCSDDGKVVIGSLFTD  103 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCc------c-ccccccccc------ccC--CceEEEecCCCcEEEeeccCC
Confidence            45555554  678999999999999998743      2 333345443      344  999999999999999888665


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeec---CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVS---STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                             +...++. ...++.+|+++|.   +..+.+++|+..| +.++.-+--++   +..+ .+....++|.      
T Consensus       104 -------~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn---k~~v-~l~~~eG~I~------  164 (846)
T KOG2066|consen  104 -------DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN---KDSV-VLSEGEGPIH------  164 (846)
T ss_pred             -------ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC---ccce-eeecCccceE------
Confidence                   3333332 2367889999993   2245689999988 77776442111   1111 3344555666      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                          +++|.-+       ++|-+..      --|++||.....
T Consensus       165 ----~i~W~g~-------lIAWand------~Gv~vyd~~~~~  190 (846)
T KOG2066|consen  165 ----SIKWRGN-------LIAWAND------DGVKVYDTPTRQ  190 (846)
T ss_pred             ----EEEecCc-------EEEEecC------CCcEEEeccccc
Confidence                8999744       6777776      469999987654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.98  E-value=1.1e-06  Score=71.76  Aligned_cols=189  Identities=18%  Similarity=0.219  Sum_probs=109.9

Q ss_pred             ceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----CCeEEE
Q 026295           11 GTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----DGSLLL   84 (240)
Q Consensus        11 ~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----d~~v~i   84 (240)
                      .+.|+++..+  ...++.|..+|.|-+-....+-   ..--....+|..+.++++|++- +.+.||.|-.    |..+.|
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h---dSs~E~tp~~ar~Ct~lAwneL-Dtn~LAagldkhrnds~~~I  133 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPH---DSSAEVTPGYARPCTSLAWNEL-DTNHLAAGLDKHRNDSSLKI  133 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcc---cccceecccccccccccccccc-cHHHHHhhhhhhcccCCccc
Confidence            5778887664  3589999999999998876431   1112234567888999999875 2455665532    457999


Q ss_pred             EEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||+..+-..+   +.-..|.. ......+++|-.  +.+.+.+|.....++++|++..       +..........+.  
T Consensus       134 wdi~s~ltvP---ke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs-------~~~~~svnTk~vq--  199 (783)
T KOG1008|consen  134 WDINSLLTVP---KESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQS-------LDSVSSVNTKYVQ--  199 (783)
T ss_pred             eecccccCCC---ccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhh-------hhhhhhhhhhhcc--
Confidence            9997651100   11111111 334455788865  8888889988889999999842       2111111121222  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE-eecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE-FDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                              .+..+|-...    +++.-. |     +.|.+|| ...-+.......  ......-..+..++|+|-
T Consensus       200 --------G~tVdp~~~n----Y~cs~~-d-----g~iAiwD~~rnienpl~~i~--~~~N~~~~~l~~~aycPt  254 (783)
T KOG1008|consen  200 --------GITVDPFSPN----YFCSNS-D-----GDIAIWDTYRNIENPLQIIL--RNENKKPKQLFALAYCPT  254 (783)
T ss_pred             --------cceecCCCCC----ceeccc-c-----CceeeccchhhhccHHHHHh--hCCCCcccceeeEEeccC
Confidence                    4445553321    565554 6     9999999 433222211110  000001114889999884

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.95  E-value=0.00027  Score=60.30  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=61.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .+++++|+|..-.|+.|-.-|.+.+|...     +.+.......|..+|..+.|||+  |..++++..-|.|.+|....
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~-----~~e~htv~~th~a~i~~l~wS~~--G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTN-----TTETHTVVETHPAPIQGLDWSHD--GTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecC-----CceeeeeccCCCCCceeEEecCC--CCeEEEcCCCceeEEEEeee
Confidence            45679999999899999999999999887     33444444579999999999999  99999999999999998763

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=6.8e-05  Score=61.51  Aligned_cols=94  Identities=19%  Similarity=0.217  Sum_probs=75.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE-EEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL-KVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ...|.-+.|+|.-.++|++..+|.|-+..+.      ++.+.++..+...+. +++|.|+  |++++.|-.||+|++.|.
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------~qRlwtip~p~~~v~~sL~W~~D--GkllaVg~kdG~I~L~Dv   91 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------WQRLWTIPIPGENVTASLCWRPD--GKLLAVGFKDGTIRLHDV   91 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec------cceeEeccCCCCccceeeeecCC--CCEEEEEecCCeEEEEEc
Confidence            3467789999999999999999999998885      567778876777777 9999999  999999999999999999


Q ss_pred             eeccCCCcccEEEEEe-eeccccEEeEEEee
Q 026295           88 IVEDAQPLQWKLCKSF-ESTSTQVLDVQFGV  117 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~  117 (240)
                      ..+       ..+..+ ......|.++-|+|
T Consensus        92 e~~-------~~l~~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   92 EKG-------GRLVSFLFSVETDISKGIWDR  115 (665)
T ss_pred             cCC-------Cceeccccccccchheeeccc
Confidence            876       333332 23456777888864

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00014  Score=60.51  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..|.--+++..+++++.|+.-|.+.+|+-....    ..+....+-.+.+.....++.  ..++|.|+..|.|.++.+..
T Consensus        34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~----~~~~~~~~~~~~~~~~~vs~~--e~lvAagt~~g~V~v~ql~~  107 (726)
T KOG3621|consen   34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE----MRKLKNEGATGITCVRSVSSV--EYLVAAGTASGRVSVFQLNK  107 (726)
T ss_pred             ceEEEEEeecCCceEEEecccceEEEEecCchh----hhcccccCccceEEEEEecch--hHhhhhhcCCceEEeehhhc
Confidence            345555677889999999999999999986321    112222234455667777777  78888889999999998876


Q ss_pred             ccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           90 EDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..+  .....+..+. .|...|++++|++  ++..+.+|...|+|..-.+..
T Consensus       108 ~~p--~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  108 ELP--RDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cCC--CcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEech
Confidence            321  1112222222 3678999999999  999999999999998877765

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.87  E-value=0.0069  Score=48.88  Aligned_cols=162  Identities=11%  Similarity=0.131  Sum_probs=85.0

Q ss_pred             cEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC------------------------------------CcccEEEE
Q 026295           58 AILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ------------------------------------PLQWKLCK  101 (240)
Q Consensus        58 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------------------------------------~~~~~~~~  101 (240)
                      .|..+.|++.  ..-|+.+...|.|-||........                                    ...+.+..
T Consensus         3 ~v~~vs~a~~--t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~   80 (395)
T PF08596_consen    3 SVTHVSFAPE--TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT   80 (395)
T ss_dssp             -EEEEEEETT--TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred             eEEEEEecCC--CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence            4677888777  666778888888887765432110                                    01234444


Q ss_pred             EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCC---
Q 026295          102 SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQ---  178 (240)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~---  178 (240)
                      .+....+.|++++.|.  -| +++.|+.+|.+.|.|+|.+      ..+..-....  ........|.+.++.|..-   
T Consensus        81 l~~~~~g~vtal~~S~--iG-Fvaigy~~G~l~viD~RGP------avI~~~~i~~--~~~~~~~~~~vt~ieF~vm~~~  149 (395)
T PF08596_consen   81 LLDAKQGPVTALKNSD--IG-FVAIGYESGSLVVIDLRGP------AVIYNENIRE--SFLSKSSSSYVTSIEFSVMTLG  149 (395)
T ss_dssp             EE---S-SEEEEEE-B--TS-EEEEEETTSEEEEEETTTT------EEEEEEEGGG----T-SS----EEEEEEEEEE-T
T ss_pred             heeccCCcEeEEecCC--Cc-EEEEEecCCcEEEEECCCC------eEEeeccccc--cccccccccCeeEEEEEEEecC
Confidence            4555678899999875  44 6999999999999999985      3333211111  0011123345557777642   


Q ss_pred             CCCCCCceEEEEecCCCCCCCeEEEEEeec-CCCCcceeEeeecCCCCCCceEEEE-EecCC
Q 026295          179 KGENQGSSFVLGFNSDTPQLNSSKVWEFDE-AHNRWLPVAELALPEDRSDEVYAVA-WALNI  238 (240)
Q Consensus       179 ~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~-~sp~~  238 (240)
                      +......+|.+|...     |.+.+|.+.. ....|.... ......+.++|..+. |+.+.
T Consensus       150 ~D~ySSi~L~vGTn~-----G~v~~fkIlp~~~g~f~v~~-~~~~~~~~~~i~~I~~i~~~~  205 (395)
T PF08596_consen  150 GDGYSSICLLVGTNS-----GNVLTFKILPSSNGRFSVQF-AGATTNHDSPILSIIPINADT  205 (395)
T ss_dssp             TSSSEEEEEEEEETT-----SEEEEEEEEE-GGG-EEEEE-EEEE--SS----EEEEEETTT
T ss_pred             CCcccceEEEEEeCC-----CCEEEEEEecCCCCceEEEE-eeccccCCCceEEEEEEECCC
Confidence            222334688888888     9999999873 333333211 111123555776665 44443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.86  E-value=6.6e-05  Score=63.84  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             EEEECCCCCEEEEEe----CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           14 SSSWNYCGQRLATGS----TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~----~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      -..|+|...+||+++    ..|.|.||--.+      ++-..+. ..-.+.+++|.|.  .-.|+.+-.-|.+.+|....
T Consensus        20 i~SWHPsePlfAVA~fS~er~GSVtIfadtG------EPqr~Vt-~P~hatSLCWHpe--~~vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   20 ISSWHPSEPLFAVASFSPERGGSVTIFADTG------EPQRDVT-YPVHATSLCWHPE--EFVLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccCCCCceeEEEEecCCCCceEEEEecCC------CCCcccc-cceehhhhccChH--HHHHhhccccceeEEEecCC
Confidence            358999999999987    448888885432      2211111 1122457999997  66778887788999999865


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      .       +.-.....|..+|..+.|||  +|..++++..-|.|.+|.+.
T Consensus        91 ~-------e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   91 T-------ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             c-------eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence            3       33333346889999999999  99999999999999999876

>smart00320 WD40 WD40 repeats

Probab=97.85  E-value=6.1e-05  Score=38.07  Aligned_cols=38  Identities=26%  Similarity=0.454  Sum_probs=33.0

Q ss_pred             EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295           98 KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE  137 (240)
Q Consensus        98 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~  137 (240)
                      ++...+..+...|.++.|.+  ++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP--DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC--CCCEEEEecCCCeEEEcC
Confidence            56667777888999999988  778999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.00012  Score=60.12  Aligned_cols=74  Identities=18%  Similarity=0.298  Sum_probs=63.9

Q ss_pred             ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEE-eEEEeecCCCcEEEEEeCCCcEEE
Q 026295           57 GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVL-DVQFGVSSTSLKLVAAYSDGHVKV  135 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~v~i  135 (240)
                      ..+.-+.|+|.  -+++|.+..+|.|-+..+.        |+.+.+++-+...++ +++|.|  +|+.+++|-.||+|++
T Consensus        21 ~~i~~~ewnP~--~dLiA~~t~~gelli~R~n--------~qRlwtip~p~~~v~~sL~W~~--DGkllaVg~kdG~I~L   88 (665)
T KOG4640|consen   21 INIKRIEWNPK--MDLIATRTEKGELLIHRLN--------WQRLWTIPIPGENVTASLCWRP--DGKLLAVGFKDGTIRL   88 (665)
T ss_pred             cceEEEEEcCc--cchhheeccCCcEEEEEec--------cceeEeccCCCCccceeeeecC--CCCEEEEEecCCeEEE
Confidence            45778999998  8999999999999998875        378888886666666 999999  9999999999999999


Q ss_pred             EEecCcc
Q 026295          136 YELLDPL  142 (240)
Q Consensus       136 w~~~~~~  142 (240)
                      .|..++.
T Consensus        89 ~Dve~~~   95 (665)
T KOG4640|consen   89 HDVEKGG   95 (665)
T ss_pred             EEccCCC
Confidence            9998853

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.73  E-value=0.0042  Score=50.81  Aligned_cols=147  Identities=18%  Similarity=0.225  Sum_probs=80.5

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +...+-....+.++|+|++++.++ ||.-.||...     .++...     .+.-....|.+.  +. +++-.....|.|
T Consensus        28 lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~-----~~r~k~-----~G~g~~~vw~~~--n~-yAv~~~~~~I~I   93 (443)
T PF04053_consen   28 LGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTAL-----AWRNKA-----FGSGLSFVWSSR--NR-YAVLESSSTIKI   93 (443)
T ss_dssp             EEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETT-----TTEEEE-----EEE-SEEEE-TS--SE-EEEE-TTS-EEE
T ss_pred             CCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEcc-----CCcccc-----cCceeEEEEecC--cc-EEEEECCCeEEE
Confidence            334445678999999999999965 5777788754     223222     244557889885  55 666666888999


Q ss_pred             E-EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           85 W-EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        85 w-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      + ++...        ....++.. ..+..+ |    .|..|...+. +.|.+||..+      ...+.++...  ++.  
T Consensus        94 ~kn~~~~--------~~k~i~~~-~~~~~I-f----~G~LL~~~~~-~~i~~yDw~~------~~~i~~i~v~--~vk--  148 (443)
T PF04053_consen   94 YKNFKNE--------VVKSIKLP-FSVEKI-F----GGNLLGVKSS-DFICFYDWET------GKLIRRIDVS--AVK--  148 (443)
T ss_dssp             EETTEE---------TT-----S-S-EEEE-E-----SSSEEEEET-TEEEEE-TTT--------EEEEESS---E-E--
T ss_pred             EEcCccc--------cceEEcCC-cccceE-E----cCcEEEEECC-CCEEEEEhhH------cceeeEEecC--CCc--
Confidence            5 44332        11222221 123333 2    2665666554 4899999987      6777766543  234  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                              .|.|++++.     +++..+.      ..+.|++....
T Consensus       149 --------~V~Ws~~g~-----~val~t~------~~i~il~~~~~  175 (443)
T PF04053_consen  149 --------YVIWSDDGE-----LVALVTK------DSIYILKYNLE  175 (443)
T ss_dssp             --------EEEE-TTSS-----EEEEE-S-------SEEEEEE-HH
T ss_pred             --------EEEEECCCC-----EEEEEeC------CeEEEEEecch
Confidence                    899999987     7777775      57888876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.68  E-value=0.014  Score=44.85  Aligned_cols=105  Identities=14%  Similarity=0.121  Sum_probs=72.9

Q ss_pred             ccceEEEEECC-CCCEEEEEeCCCc-EEEEeCCCCCCCcEEEEeEeeecCccEE--EEEEcCCCCCCEEEEE-----ecC
Q 026295            9 DKGTTSSSWNY-CGQRLATGSTDGT-LSIFDSPDPSSSSFTCNLKTKVHAGAIL--KVVWVPPEFGDAVACI-----CSD   79 (240)
Q Consensus         9 ~~~v~~~~~s~-~~~~l~~~~~d~~-i~iw~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~l~s~-----~~d   79 (240)
                      ..+...++.+| .+..++.+..-|+ ..+||..     +++....+....+.-.  .-.|+++  |++|++.     ...
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~-----~g~~~~~~~a~~gRHFyGHg~fs~d--G~~LytTEnd~~~g~   76 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCR-----TGQLLQRLWAPPGRHFYGHGVFSPD--GRLLYTTENDYETGR   76 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcC-----CCceeeEEcCCCCCEEecCEEEcCC--CCEEEEeccccCCCc
Confidence            34566788899 5567777777665 6678987     4445544433222221  3579999  9988875     335


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      |.|-|||....      ++.+.++..+.-.-..+.+.|  +|..|+++.
T Consensus        77 G~IgVyd~~~~------~~ri~E~~s~GIGPHel~l~p--DG~tLvVAN  117 (305)
T PF07433_consen   77 GVIGVYDAARG------YRRIGEFPSHGIGPHELLLMP--DGETLVVAN  117 (305)
T ss_pred             EEEEEEECcCC------cEEEeEecCCCcChhhEEEcC--CCCEEEEEc
Confidence            78999999732      378888888777778889999  997777764

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.64  E-value=0.011  Score=50.24  Aligned_cols=135  Identities=13%  Similarity=0.120  Sum_probs=81.3

Q ss_pred             EEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE
Q 026295           46 FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV  125 (240)
Q Consensus        46 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~  125 (240)
                      |....++..--....-+.-+..  +...+.-.....+.|||.+...     .+-...+ .....|..+.|...++++.++
T Consensus        19 w~~t~~~~T~i~~~~li~gss~--~k~a~V~~~~~~LtIWD~~~~~-----lE~~~~f-~~~~~I~dLDWtst~d~qsiL   90 (631)
T PF12234_consen   19 WLLTSTFETGISNPSLISGSSI--KKIAVVDSSRSELTIWDTRSGV-----LEYEESF-SEDDPIRDLDWTSTPDGQSIL   90 (631)
T ss_pred             EEEEEEEecCCCCcceEeeccc--CcEEEEECCCCEEEEEEcCCcE-----EEEeeee-cCCCceeeceeeecCCCCEEE
Confidence            3444444433334444544444  5544443334479999997651     1222233 346889999998877999999


Q ss_pred             EEeCCCcEEEEEecCc---ccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEE
Q 026295          126 AAYSDGHVKVYELLDP---LILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSK  202 (240)
Q Consensus       126 ~~~~dg~v~iw~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~  202 (240)
                      +.+..+.|.+|.-...   .....|..+.++.......++       +.+..|.+++      .|++|+.      +.+.
T Consensus        91 aVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~-------Igds~Wl~~G------~LvV~sG------Nqlf  151 (631)
T PF12234_consen   91 AVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHP-------IGDSIWLKDG------TLVVGSG------NQLF  151 (631)
T ss_pred             EEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCC-------ccceeEecCC------eEEEEeC------CEEE
Confidence            9999999999864211   122345555555432111111       1288999999      4777665      7899


Q ss_pred             EEEee
Q 026295          203 VWEFD  207 (240)
Q Consensus       203 iw~~~  207 (240)
                      |++-.
T Consensus       152 v~dk~  156 (631)
T PF12234_consen  152 VFDKW  156 (631)
T ss_pred             EECCC
Confidence            99753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.63  E-value=0.0027  Score=54.35  Aligned_cols=147  Identities=12%  Similarity=0.089  Sum_probs=86.6

Q ss_pred             EEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecccc-EEeEEEeecCCCcEEEEEeCCCc-----EEEE
Q 026295           63 VWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQ-VLDVQFGVSSTSLKLVAAYSDGH-----VKVY  136 (240)
Q Consensus        63 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~-----v~iw  136 (240)
                      +|++.  +..++.|+.+|.|.+.+-..        +.++.|+.+... |..+....  ...+|++.+.|+.     |+||
T Consensus        30 c~~s~--~~~vvigt~~G~V~~Ln~s~--------~~~~~fqa~~~siv~~L~~~~--~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   30 CCSSS--TGSVVIGTADGRVVILNSSF--------QLIRGFQAYEQSIVQFLYILN--KQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             EEcCC--CceEEEeeccccEEEecccc--------eeeehheecchhhhhHhhccc--CceEEEEEeecCCCCceEEEEe
Confidence            56677  78899999999998877543        566778776666 44443322  3357787776654     8999


Q ss_pred             EecCcccccceeEE--eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295          137 ELLDPLILKNWQLQ--AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL  214 (240)
Q Consensus       137 ~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~  214 (240)
                      ++....+....++.  ..+..+..+.     ....+.+++.+.+-.     .+|+|..+     |.|..+.-+-...+-.
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~-----~~~p~s~l~Vs~~l~-----~Iv~Gf~n-----G~V~~~~GDi~RDrgs  162 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPT-----NPSPASSLAVSEDLK-----TIVCGFTN-----GLVICYKGDILRDRGS  162 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCC-----CCCcceEEEEEcccc-----EEEEEecC-----cEEEEEcCcchhcccc
Confidence            99864333223333  2222211111     111112677777765     79999998     9999997532111111


Q ss_pred             eeEeeecCCCCCCceEEEEEecCCC
Q 026295          215 PVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       215 ~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       ...+ .+. -.++|+.+++.-|+.
T Consensus       163 -r~~~-~~~-~~~pITgL~~~~d~~  184 (933)
T KOG2114|consen  163 -RQDY-SHR-GKEPITGLALRSDGK  184 (933)
T ss_pred             -ceee-ecc-CCCCceeeEEecCCc
Confidence             1111 111 234899999887763

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.61  E-value=0.016  Score=43.61  Aligned_cols=180  Identities=12%  Similarity=0.070  Sum_probs=92.5

Q ss_pred             chhcccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +.+.+..+.+..++|+|+.+ ++++....+.|..++..      ++.+..+.-. .+..-.|++..+  +.++++.-.++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~------G~vlr~i~l~g~~D~EgI~y~g~--~~~vl~~Er~~   86 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD------GKVLRRIPLDGFGDYEGITYLGN--GRYVLSEERDQ   86 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------EEEEEE-SS-SSEEEEEE-ST--TEEEEEETTTT
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC------CCEEEEEeCCCCCCceeEEEECC--CEEEEEEcCCC
Confidence            44666666799999999755 66666677777667754      2445554422 345778898776  76666655688


Q ss_pred             eEEEEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      .+.++++...... ..-.....+.     .....+-.++|+|  .+..|+.+-......+|.+.............. ..
T Consensus        87 ~L~~~~~~~~~~~-~~~~~~~~~~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~-~~  162 (248)
T PF06977_consen   87 RLYIFTIDDDTTS-LDRADVQKISLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD-QD  162 (248)
T ss_dssp             EEEEEEE----TT---EEEEEEEE---S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE--HH
T ss_pred             cEEEEEEeccccc-cchhhceEEecccccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeeccc-cc
Confidence            8888888432110 0001122222     2345688999998  666666666666778888764110000111100 01


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      ...    .....-...+++++|....    +++.....     ..|.++|..
T Consensus       163 ~~~----~~~~~~d~S~l~~~p~t~~----lliLS~es-----~~l~~~d~~  201 (248)
T PF06977_consen  163 LDD----DKLFVRDLSGLSYDPRTGH----LLILSDES-----RLLLELDRQ  201 (248)
T ss_dssp             HH-----HT--SS---EEEEETTTTE----EEEEETTT-----TEEEEE-TT
T ss_pred             ccc----ccceeccccceEEcCCCCe----EEEEECCC-----CeEEEECCC
Confidence            110    0001112238889998752    55665555     888888843

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0013  Score=54.93  Aligned_cols=124  Identities=14%  Similarity=0.153  Sum_probs=84.6

Q ss_pred             cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295           55 HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK  134 (240)
Q Consensus        55 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  134 (240)
                      +...|.--++...  +++++.|+.-|.+.+|+-..+.      .......+....+..+..++  +..++|+|+..|.|.
T Consensus        32 ~~~~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~------~~~~~~~~~~~~~~~~~vs~--~e~lvAagt~~g~V~  101 (726)
T KOG3621|consen   32 FPARVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGE------MRKLKNEGATGITCVRSVSS--VEYLVAAGTASGRVS  101 (726)
T ss_pred             CcceEEEEEeecC--CceEEEecccceEEEEecCchh------hhcccccCccceEEEEEecc--hhHhhhhhcCCceEE
Confidence            3445655666666  8999999999999999875541      11222222445566677777  788889999999999


Q ss_pred             EEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       135 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ++.++...+.. ........         -.+.|.|++++|++++.     .+.+|.+.     |+|..-.++.
T Consensus       102 v~ql~~~~p~~-~~~~t~~d---------~~~~~rVTal~Ws~~~~-----k~ysGD~~-----Gkv~~~~L~s  155 (726)
T KOG3621|consen  102 VFQLNKELPRD-LDYVTPCD---------KSHKCRVTALEWSKNGM-----KLYSGDSQ-----GKVVLTELDS  155 (726)
T ss_pred             eehhhccCCCc-ceeecccc---------ccCCceEEEEEeccccc-----EEeecCCC-----ceEEEEEech
Confidence            99887622111 11111110         11556667999999998     79999888     9999988877

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.57  E-value=0.0077  Score=38.84  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=48.3

Q ss_pred             EEEEEEcCC-CCC-CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295           59 ILKVVWVPP-EFG-DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY  136 (240)
Q Consensus        59 v~~~~~~~~-~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  136 (240)
                      |++|++..- ..| +.|+.|+.|..|++|+-.         ..+.++... ..|..++-..  . ..++.+-.+|+|-+|
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~---------e~~~Ei~e~-~~v~~L~~~~--~-~~F~Y~l~NGTVGvY   68 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD---------EIVAEITET-DKVTSLCSLG--G-GRFAYALANGTVGVY   68 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC---------cEEEEEecc-cceEEEEEcC--C-CEEEEEecCCEEEEE
Confidence            556665431 112 578999999999999863         566666654 5666666554  4 559999999999999


Q ss_pred             Eec
Q 026295          137 ELL  139 (240)
Q Consensus       137 ~~~  139 (240)
                      +-.
T Consensus        69 ~~~   71 (111)
T PF14783_consen   69 DRS   71 (111)
T ss_pred             eCc
Confidence            864

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.55  E-value=0.03  Score=45.28  Aligned_cols=76  Identities=14%  Similarity=0.169  Sum_probs=50.5

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE--eee------cCccEEEEEEcC---CCCC---CEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK--TKV------HAGAILKVVWVP---PEFG---DAV   73 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~------h~~~v~~~~~~~---~~~~---~~l   73 (240)
                      ..+.|++++.|.-| ++|.|.++|.+.|.|++.+     ..+..  +..      ....|.++.|+-   ..++   -.+
T Consensus        85 ~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGP-----avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L  158 (395)
T PF08596_consen   85 KQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGP-----AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL  158 (395)
T ss_dssp             -S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTT-----EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred             cCCcEeEEecCCCc-EEEEEecCCcEEEEECCCC-----eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence            36789999997544 9999999999999999865     23322  222      234577788762   1112   467


Q ss_pred             EEEecCCeEEEEEeee
Q 026295           74 ACICSDGSLLLWEEIV   89 (240)
Q Consensus        74 ~s~~~d~~v~iwd~~~   89 (240)
                      ++|...|.+.+|.+.-
T Consensus       159 ~vGTn~G~v~~fkIlp  174 (395)
T PF08596_consen  159 LVGTNSGNVLTFKILP  174 (395)
T ss_dssp             EEEETTSEEEEEEEEE
T ss_pred             EEEeCCCCEEEEEEec
Confidence            8888899999998863

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.54  E-value=0.0085  Score=50.46  Aligned_cols=79  Identities=11%  Similarity=0.083  Sum_probs=52.9

Q ss_pred             cccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccc------eeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          107 STQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKN------WQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       107 ~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                      ......+.++|  +|+++++++ .+++|.|+|+.+....-.      -.+..+......+           ...+|.+++
T Consensus       320 GKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-----------LHTaFDg~G  386 (635)
T PRK02888        320 PKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-----------LHTAFDGRG  386 (635)
T ss_pred             CCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-----------ceEEECCCC
Confidence            35567899999  999876665 589999999986322100      1122222222222           267898887


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .     .+.+-+-|     ..|-.|++..
T Consensus       387 ~-----aytslf~d-----sqv~kwn~~~  405 (635)
T PRK02888        387 N-----AYTTLFLD-----SQIVKWNIEA  405 (635)
T ss_pred             C-----EEEeEeec-----ceeEEEehHH
Confidence            6     77778888     9999999876

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.54  E-value=0.01  Score=47.84  Aligned_cols=108  Identities=13%  Similarity=0.051  Sum_probs=65.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +..+..++.+|.+..||..     +++.+-....  .......  ..  +..++.++.||.+..+|..++       +.+
T Consensus       241 ~~~vy~~~~~g~l~a~d~~-----tG~~~W~~~~--~~~~~p~--~~--~~~vyv~~~~G~l~~~d~~tG-------~~~  302 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLR-----SGRVLWKRDA--SSYQGPA--VD--DNRLYVTDADGVVVALDRRSG-------SEL  302 (377)
T ss_pred             CCEEEEEEcCCEEEEEECC-----CCcEEEeecc--CCccCce--Ee--CCEEEEECCCCeEEEEECCCC-------cEE
Confidence            4577778888999999987     4444433331  1111111  12  566777788999999998765       333


Q ss_pred             EEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295          101 KSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus       101 ~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      -...... ........    .+..+++++.+|.|.++|..+      ++.+..+..+
T Consensus       303 W~~~~~~~~~~ssp~i----~g~~l~~~~~~G~l~~~d~~t------G~~~~~~~~~  349 (377)
T TIGR03300       303 WKNDELKYRQLTAPAV----VGGYLVVGDFEGYLHWLSRED------GSFVARLKTD  349 (377)
T ss_pred             EccccccCCccccCEE----ECCEEEEEeCCCEEEEEECCC------CCEEEEEEcC
Confidence            3332111 11122222    355788899999999999877      5555555433

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=97.51  E-value=0.031  Score=44.34  Aligned_cols=101  Identities=11%  Similarity=-0.080  Sum_probs=73.2

Q ss_pred             CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----------CCeEEEEEeeeccCCCcccEEE
Q 026295           31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----------DGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +.|.+.|..     +.+.+.++..-..+- .+ ++|+  ++.++.+..          +..|.+||..+.       +.+
T Consensus        27 ~~v~ViD~~-----~~~v~g~i~~G~~P~-~~-~spD--g~~lyva~~~~~R~~~G~~~d~V~v~D~~t~-------~~~   90 (352)
T TIGR02658        27 TQVYTIDGE-----AGRVLGMTDGGFLPN-PV-VASD--GSFFAHASTVYSRIARGKRTDYVEVIDPQTH-------LPI   90 (352)
T ss_pred             ceEEEEECC-----CCEEEEEEEccCCCc-ee-ECCC--CCEEEEEeccccccccCCCCCEEEEEECccC-------cEE
Confidence            789999998     667777776422322 34 8999  887776655          679999999887       777


Q ss_pred             EEeeeccc-------cEEeEEEeecCCCcEEEEEe-C-CCcEEEEEecCcccccceeEEeeeec
Q 026295          101 KSFESTST-------QVLDVQFGVSSTSLKLVAAY-S-DGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus       101 ~~~~~~~~-------~v~~~~~~~~~~~~~l~~~~-~-dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      ..+.....       ....++++|  +|++|++.. . +..|.+.|+.+      .+.+.++..
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~--dgk~l~V~n~~p~~~V~VvD~~~------~kvv~ei~v  146 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTP--DNKTLLFYQFSPSPAVGVVDLEG------KAFVRMMDV  146 (352)
T ss_pred             eEEccCCCchhhccCccceEEECC--CCCEEEEecCCCCCEEEEEECCC------CcEEEEEeC
Confidence            66663211       223688888  999888776 3 68999999987      566666654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.49  E-value=0.0093  Score=48.04  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=84.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL   99 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   99 (240)
                      .+.++++++.++.|.-+|..     +++.+-.+............  .  +..++.++.++.+..+|..++       +.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~-----tG~~~W~~~~~~~~~~~p~v--~--~~~v~v~~~~g~l~ald~~tG-------~~  127 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAE-----TGKRLWRVDLDERLSGGVGA--D--GGLVFVGTEKGEVIALDAEDG-------KE  127 (377)
T ss_pred             ECCEEEEECCCCeEEEEEcc-----CCcEeeeecCCCCcccceEE--c--CCEEEEEcCCCEEEEEECCCC-------cE
Confidence            46688888888999999987     45555444432221112221  2  566778888999999998766       43


Q ss_pred             EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                      +-..... ..+.+   +|...+..++.++.+|.|..||.++.      +.+-++...........  .+   +.... ++
T Consensus       128 ~W~~~~~-~~~~~---~p~v~~~~v~v~~~~g~l~a~d~~tG------~~~W~~~~~~~~~~~~~--~~---sp~~~-~~  191 (377)
T TIGR03300       128 LWRAKLS-SEVLS---PPLVANGLVVVRTNDGRLTALDAATG------ERLWTYSRVTPALTLRG--SA---SPVIA-DG  191 (377)
T ss_pred             eeeeccC-ceeec---CCEEECCEEEEECCCCeEEEEEcCCC------ceeeEEccCCCceeecC--CC---CCEEE-CC
Confidence            3333222 11211   11112345777788999999999873      33333322111100000  00   11111 11


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL  214 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~  214 (240)
                            .++++..+     +.+..+|..++...|.
T Consensus       192 ------~v~~~~~~-----g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       192 ------GVLVGFAG-----GKLVALDLQTGQPLWE  215 (377)
T ss_pred             ------EEEEECCC-----CEEEEEEccCCCEeee
Confidence                  46667776     8898898888776664

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.36  E-value=0.00093  Score=36.05  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSP   39 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~   39 (240)
                      ...|.+++|+|...+||.+..+|.|.||.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            3579999999999999999999999999985

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.34  E-value=0.01  Score=44.28  Aligned_cols=144  Identities=16%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             CCcEEEEeCCCCCCCcEEEEeEeee---cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec
Q 026295           30 DGTLSIFDSPDPSSSSFTCNLKTKV---HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST  106 (240)
Q Consensus        30 d~~i~iw~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  106 (240)
                      +|+|..||..     +++.+-...-   ....+ .... +.  +..+++++.++.+..||..++       +.+-.+...
T Consensus         2 ~g~l~~~d~~-----tG~~~W~~~~~~~~~~~~-~~~~-~~--~~~v~~~~~~~~l~~~d~~tG-------~~~W~~~~~   65 (238)
T PF13360_consen    2 DGTLSALDPR-----TGKELWSYDLGPGIGGPV-ATAV-PD--GGRVYVASGDGNLYALDAKTG-------KVLWRFDLP   65 (238)
T ss_dssp             TSEEEEEETT-----TTEEEEEEECSSSCSSEE-ETEE-EE--TTEEEEEETTSEEEEEETTTS-------EEEEEEECS
T ss_pred             CCEEEEEECC-----CCCEEEEEECCCCCCCcc-ceEE-Ee--CCEEEEEcCCCEEEEEECCCC-------CEEEEeecc
Confidence            6788899987     4555555542   12222 1122 23  666777788999999998766       655555532


Q ss_pred             cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCce
Q 026295          107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSS  186 (240)
Q Consensus       107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~  186 (240)
                       ..+...-..   .+..+++++.++.+..+|..+      ++....+.........    ........+.  +.     .
T Consensus        66 -~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~t------G~~~W~~~~~~~~~~~----~~~~~~~~~~--~~-----~  124 (238)
T PF13360_consen   66 -GPISGAPVV---DGGRVYVGTSDGSLYALDAKT------GKVLWSIYLTSSPPAG----VRSSSSPAVD--GD-----R  124 (238)
T ss_dssp             -SCGGSGEEE---ETTEEEEEETTSEEEEEETTT------SCEEEEEEE-SSCTCS----TB--SEEEEE--TT-----E
T ss_pred             -ccccceeee---cccccccccceeeeEecccCC------cceeeeeccccccccc----cccccCceEe--cC-----E
Confidence             222111122   344467777888999999877      3443332111000000    0000022222  33     5


Q ss_pred             EEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          187 FVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       187 l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                      ++++..+     +.|..+|..+++..|..
T Consensus       125 ~~~~~~~-----g~l~~~d~~tG~~~w~~  148 (238)
T PF13360_consen  125 LYVGTSS-----GKLVALDPKTGKLLWKY  148 (238)
T ss_dssp             EEEEETC-----SEEEEEETTTTEEEEEE
T ss_pred             EEEEecc-----CcEEEEecCCCcEEEEe
Confidence            7777766     89999998888766654

...

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.34  E-value=0.019  Score=50.75  Aligned_cols=71  Identities=20%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE---EEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL---KVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~---~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      .++|++++|+.+|++++.|-.+|.|.+||..     +.+.++.+..|..+..   .+.|...  +..++++..-|.  +|
T Consensus       130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~-----~~k~l~~i~e~~ap~t~vi~v~~t~~--nS~llt~D~~Gs--f~  200 (1206)
T KOG2079|consen  130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH-----RAKILKVITEHGAPVTGVIFVGRTSQ--NSKLLTSDTGGS--FW  200 (1206)
T ss_pred             CCcceeeEecCCCceeccccCCCcEEEEEcc-----CCcceeeeeecCCccceEEEEEEeCC--CcEEEEccCCCc--eE
Confidence            4589999999999999999999999999998     4456666665555543   4444444  566777766665  56


Q ss_pred             Eee
Q 026295           86 EEI   88 (240)
Q Consensus        86 d~~   88 (240)
                      .+.
T Consensus       201 ~lv  203 (1206)
T KOG2079|consen  201 KLV  203 (1206)
T ss_pred             EEE
Confidence            654

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.32  E-value=0.0077  Score=51.14  Aligned_cols=159  Identities=17%  Similarity=0.246  Sum_probs=95.8

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-----EEEEEee
Q 026295           20 CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-----LLLWEEI   88 (240)
Q Consensus        20 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-----v~iwd~~   88 (240)
                      .+...++|+.|      .++..||...+   +|..+..+........ ++- -.  |.+.+.|+.||.     |-.||..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~---~W~~~a~M~~~R~~~~-v~~-l~--g~iYavGG~dg~~~l~svE~YDp~  404 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTN---QWTPVAPMNTKRSDFG-VAV-LD--GKLYAVGGFDGEKSLNSVECYDPV  404 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCC---ceeccCCccCccccce-eEE-EC--CEEEEEeccccccccccEEEecCC
Confidence            45788889888      34667887755   6776666654333222 222 23  788889999874     5555654


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC------cEEEEEecCcccccceeEEeeeecccceeec
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG------HVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      .     ..|..+..+.......-.+.+    +|.+.++|+.++      +|..||..+    ..|..+..+.......  
T Consensus       405 ~-----~~W~~va~m~~~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~YDP~t----~~W~~~~~M~~~R~~~--  469 (571)
T KOG4441|consen  405 T-----NKWTPVAPMLTRRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVECYDPET----NTWTLIAPMNTRRSGF--  469 (571)
T ss_pred             C-----CcccccCCCCcceeeeEEEEE----CCEEEEEcCcCCCccccceEEEEcCCC----CceeecCCcccccccc--
Confidence            4     577877766654445544555    788888888554      467788776    4476665554332221  


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA  217 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~  217 (240)
                               .++.- +     +.++++|+.|+...+.+|..||..+.+  |....
T Consensus       470 ---------g~a~~-~-----~~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~  507 (571)
T KOG4441|consen  470 ---------GVAVL-N-----GKIYVVGGFDGTSALSSVERYDPETNQ--WTMVA  507 (571)
T ss_pred             ---------eEEEE-C-----CEEEEECCccCCCccceEEEEcCCCCc--eeEcc
Confidence                     12211 1     227888887743334567778876654  55543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.24  E-value=0.048  Score=40.68  Aligned_cols=147  Identities=16%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-eecC---ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcc
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHA---GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ   96 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~h~---~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   96 (240)
                      +..++.+..++.+..+|..     +++.+... ....   ...........  +..++.+..++.|..+|..++      
T Consensus        76 ~~~v~v~~~~~~l~~~d~~-----tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l~~~d~~tG------  142 (238)
T PF13360_consen   76 GGRVYVGTSDGSLYALDAK-----TGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKLVALDPKTG------  142 (238)
T ss_dssp             TTEEEEEETTSEEEEEETT-----TSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEEEEEETTTT------
T ss_pred             ccccccccceeeeEecccC-----CcceeeeeccccccccccccccCceEe--cCEEEEEeccCcEEEEecCCC------
Confidence            3455555566667777755     33444432 2110   01111122122  566777777899999998776      


Q ss_pred             cEEEEEeeecccc----------E-EeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           97 WKLCKSFESTSTQ----------V-LDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        97 ~~~~~~~~~~~~~----------v-~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                       +.+.........          + ..+.+ .  ++ .+..++.++.+.-+|+.+.      +..-...  .....    
T Consensus       143 -~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~-~v~~~~~~g~~~~~d~~tg------~~~w~~~--~~~~~----  205 (238)
T PF13360_consen  143 -KLLWKYPVGEPRGSSPISSFSDINGSPVI-S--DG-RVYVSSGDGRVVAVDLATG------EKLWSKP--ISGIY----  205 (238)
T ss_dssp             -EEEEEEESSTT-SS--EEEETTEEEEEEC-C--TT-EEEEECCTSSEEEEETTTT------EEEEEEC--SS-EC----
T ss_pred             -cEEEEeecCCCCCCcceeeecccccceEE-E--CC-EEEEEcCCCeEEEEECCCC------CEEEEec--CCCcc----
Confidence             555555432211          1 11222 1  34 5777777775333388773      3221111  11111    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL  214 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~  214 (240)
                            . ...+.+.     .|++++.+     +.|..||+.+++..|+
T Consensus       206 ------~-~~~~~~~-----~l~~~~~~-----~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  206 ------S-LPSVDGG-----TLYVTSSD-----GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             ------E-CEECCCT-----EEEEEETT-----TEEEEEETTTTEEEEE
T ss_pred             ------C-CceeeCC-----EEEEEeCC-----CEEEEEECCCCCEEeE
Confidence                  1 1234444     67777777     9999999999876664

...

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.21  E-value=0.0014  Score=35.38  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=26.8

Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                      +..++|+|...     +||+|..+     |.|.||.+ +.+..
T Consensus        14 v~~~~w~P~md-----LiA~~t~~-----g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   14 VSCMSWCPTMD-----LIALGTED-----GEVLVYRL-NWQRI   45 (47)
T ss_pred             EEEEEECCCCC-----EEEEEECC-----CeEEEEEC-CCcCc
Confidence            34899999998     99999999     99999998 44433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.16  E-value=0.018  Score=48.93  Aligned_cols=160  Identities=18%  Similarity=0.259  Sum_probs=97.6

Q ss_pred             CCCEEEEEeCCCc-----EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC------eEEEEEee
Q 026295           20 CGQRLATGSTDGT-----LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG------SLLLWEEI   88 (240)
Q Consensus        20 ~~~~l~~~~~d~~-----i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~------~v~iwd~~   88 (240)
                      +|...|+|+.||.     |..||...+   .|..+..+...........+  .  |.+.+.|+.++      ++..||..
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~---~W~~va~m~~~r~~~gv~~~--~--g~iYi~GG~~~~~~~l~sve~YDP~  452 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTN---KWTPVAPMLTRRSGHGVAVL--G--GKLYIIGGGDGSSNCLNSVECYDPE  452 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCC---cccccCCCCcceeeeEEEEE--C--CEEEEEcCcCCCccccceEEEEcCC
Confidence            5778888988864     667777644   56655544332222222222  3  67777777654      45667765


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCc-----EEEEEecCcccccceeEEeeeecccceeecc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH-----VKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-----v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +     ..|..+..+...........+    ++.+.+.|+.|+.     |..||.++    .+|..+..+......+.  
T Consensus       453 t-----~~W~~~~~M~~~R~~~g~a~~----~~~iYvvGG~~~~~~~~~VE~ydp~~----~~W~~v~~m~~~rs~~g--  517 (571)
T KOG4441|consen  453 T-----NTWTLIAPMNTRRSGFGVAVL----NGKIYVVGGFDGTSALSSVERYDPET----NQWTMVAPMTSPRSAVG--  517 (571)
T ss_pred             C-----CceeecCCcccccccceEEEE----CCEEEEECCccCCCccceEEEEcCCC----CceeEcccCcccccccc--
Confidence            5     578888888765555554444    7888888887763     67788776    44666644433322211  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEe
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAE  218 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~  218 (240)
                              .+.+   +    +.+.++|+.|....+++|..||..++.  |.....
T Consensus       518 --------~~~~---~----~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  518 --------VVVL---G----GKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             --------EEEE---C----CEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence                    1222   1    227888887755555889999876654  665544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.11  E-value=0.021  Score=46.62  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=64.1

Q ss_pred             ceEEEEECCCCCEEEEEe---CC-CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEE
Q 026295           11 GTTSSSWNYCGQRLATGS---TD-GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLW   85 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~---~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iw   85 (240)
                      .+..-+|+|+++.++--.   .. ..+.++++...   ....+..+.++.   ..-+|+|+  |+.++ +...|+...||
T Consensus       194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---~~~~i~~~~g~~---~~P~fspD--G~~l~f~~~rdg~~~iy  265 (425)
T COG0823         194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---KRPVILNFNGNN---GAPAFSPD--GSKLAFSSSRDGSPDIY  265 (425)
T ss_pred             ceeccccCcCCCceEEEEEecCCCceEEEEeccCC---ccceeeccCCcc---CCccCCCC--CCEEEEEECCCCCccEE
Confidence            455668899887655442   22 35778888744   223344444443   36789999  87655 55667765555


Q ss_pred             --EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEec
Q 026295           86 --EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELL  139 (240)
Q Consensus        86 --d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~  139 (240)
                        |+..+       . +..+....+.-..-.|+|  +|.+++..+ ..|.-.||-..
T Consensus       266 ~~dl~~~-------~-~~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         266 LMDLDGK-------N-LPRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             EEcCCCC-------c-ceecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEEC
Confidence              55443       2 222333323334667888  999876665 44555555443

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.09  E-value=0.029  Score=44.83  Aligned_cols=103  Identities=18%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEe---------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           18 NYCGQRLATGS---------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        18 s~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      |||+++++...         ..+.+.|||+..     .+....... ...+....|+|+  |+.++... ++.|.+++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~-----~~~~~l~~~-~~~~~~~~~sP~--g~~~~~v~-~~nly~~~~~   71 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET-----GEITPLTPP-PPKLQDAKWSPD--GKYIAFVR-DNNLYLRDLA   71 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT-----TEEEESS-E-ETTBSEEEE-SS--STEEEEEE-TTEEEEESST
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCC-----CceEECcCC-ccccccceeecC--CCeeEEEe-cCceEEEECC
Confidence            57887776632         235688899983     232222222 567889999999  99888764 6789888765


Q ss_pred             eccCCCcccEEEE-Eeee-------c---------cccEEeEEEeecCCCcEEEEEeCC-CcEEEEEe
Q 026295           89 VEDAQPLQWKLCK-SFES-------T---------STQVLDVQFGVSSTSLKLVAAYSD-GHVKVYEL  138 (240)
Q Consensus        89 ~~~~~~~~~~~~~-~~~~-------~---------~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~  138 (240)
                      .+       ...+ +..+       .         -..-..+-|||  ++++|+....| ..|+.+.+
T Consensus        72 ~~-------~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSp--d~~~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   72 TG-------QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSP--DSKYLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             TS-------EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-T--TSSEEEEEEEE-TTS-EEEE
T ss_pred             CC-------CeEEeccccceeEEcCccceeccccccccccceEECC--CCCEEEEEEECCcCCceEEe
Confidence            43       1111 1111       0         11235688999  99988876643 44555444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.01  E-value=0.14  Score=41.74  Aligned_cols=158  Identities=16%  Similarity=0.211  Sum_probs=94.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEc---CCCCCCEEEEEecCCeEEEEEeeeccCC---C
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWV---PPEFGDAVACICSDGSLLLWEEIVEDAQ---P   94 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~   94 (240)
                      ...+++|+..|.++||+....+.....++...+ -+.+|..+..-   +......|+. -.-..+.+|.+...++.   +
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            369999999999999999654322222333333 25788887753   2211234444 45678899998654332   1


Q ss_pred             cccEEEEEeee-ccccEEeEEEeecC--C-CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           95 LQWKLCKSFES-TSTQVLDVQFGVSS--T-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        95 ~~~~~~~~~~~-~~~~v~~~~~~~~~--~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                      ..++....+.. .......+++-|..  . ..++.+-+.||++.+|+-+.      ......+..  ..++         
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~------~~f~~~lp~--~llP---------  177 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES------FAFSRFLPD--FLLP---------  177 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc------EEEEEEcCC--CCCC---------
Confidence            22232222221 12333445555531  2 35789999999999999765      332333322  1111         


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      ..+.|+|...     .|++++++     ..+..|.+.
T Consensus       178 gPl~Y~~~tD-----sfvt~sss-----~~l~~Yky~  204 (418)
T PF14727_consen  178 GPLCYCPRTD-----SFVTASSS-----WTLECYKYQ  204 (418)
T ss_pred             cCeEEeecCC-----EEEEecCc-----eeEEEecHH
Confidence            1688998887     78888887     899999874

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.99  E-value=0.08  Score=46.41  Aligned_cols=101  Identities=10%  Similarity=0.102  Sum_probs=67.6

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcEEEEe-Eee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295           23 RLATGSTDGTLSIFDSPDPSSSSFTCNL-KTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL   99 (240)
Q Consensus        23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   99 (240)
                      .-+.|-.+..+..||.+..+   -+++. ..+  .......+++=+.+   -+||.|+.+|.||+||-...       +.
T Consensus       544 ~tflGls~n~lfriDpR~~~---~k~v~~~~k~Y~~~~~Fs~~aTt~~---G~iavgs~~G~IRLyd~~g~-------~A  610 (794)
T PF08553_consen  544 QTFLGLSDNSLFRIDPRLSG---NKLVDSQSKQYSSKNNFSCFATTED---GYIAVGSNKGDIRLYDRLGK-------RA  610 (794)
T ss_pred             ceEEEECCCceEEeccCCCC---CceeeccccccccCCCceEEEecCC---ceEEEEeCCCcEEeecccch-------hh
Confidence            45667777889999987542   11221 111  22334556655443   45889999999999995432       34


Q ss_pred             EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295          100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      ...+++...+|..|..+.  +|+++++.+. ..+.+++..
T Consensus       611 KT~lp~lG~pI~~iDvt~--DGkwilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  611 KTALPGLGDPIIGIDVTA--DGKWILATCK-TYLLLIDTL  647 (794)
T ss_pred             hhcCCCCCCCeeEEEecC--CCcEEEEeec-ceEEEEEEe
Confidence            445667778999999988  9998877664 578888864

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.0042  Score=54.63  Aligned_cols=104  Identities=18%  Similarity=0.276  Sum_probs=70.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL   99 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   99 (240)
                      .+-.++.|+..|.+-..|...+    ..+...-..-.++|.+++|+.+  |..++.|-.+|.|.+||...+       ++
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n----L~~~~~ne~v~~~Vtsvafn~d--g~~l~~G~~~G~V~v~D~~~~-------k~  164 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN----LGPLHQNERVQGPVTSVAFNQD--GSLLLAGLGDGHVTVWDMHRA-------KI  164 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc----cchhhcCCccCCcceeeEecCC--CceeccccCCCcEEEEEccCC-------cc
Confidence            4557888888899988887632    1111111223578999999998  999999999999999999877       66


Q ss_pred             EEEeeeccccEEeEEEee-cCCCcEEEEEeCCCcEEEEEe
Q 026295          100 CKSFESTSTQVLDVQFGV-SSTSLKLVAAYSDGHVKVYEL  138 (240)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iw~~  138 (240)
                      ++.+..+..+...+-+.- ...+..++++..-|.  +|.+
T Consensus       165 l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  165 LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            777766555554443321 113445677666664  6665

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.96  E-value=0.06  Score=45.87  Aligned_cols=134  Identities=13%  Similarity=0.354  Sum_probs=79.2

Q ss_pred             CeEEEEEeeec-cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           80 GSLLLWEEIVE-DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        80 ~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      |.|+.|..... +.....|....++......+.-+.-+.  .++..++-+...++.|||.+...    .+....+ ....
T Consensus         1 g~~~~~~a~v~~~~~~~~w~~t~~~~T~i~~~~li~gss--~~k~a~V~~~~~~LtIWD~~~~~----lE~~~~f-~~~~   73 (631)
T PF12234_consen    1 GRIRTWTARVDTESNKIEWLLTSTFETGISNPSLISGSS--IKKIAVVDSSRSELTIWDTRSGV----LEYEESF-SEDD   73 (631)
T ss_pred             CeeEEEEEEEcCCCCeEEEEEEEEEecCCCCcceEeecc--cCcEEEEECCCCEEEEEEcCCcE----EEEeeee-cCCC
Confidence            45667765532 223466777777776556666666655  55533443344578999998732    2222233 2334


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe-----ecCCCCcceeEeeecCCCCC-CceEEE
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF-----DEAHNRWLPVAELALPEDRS-DEVYAV  232 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~-----~~~~~~~~~~~~~~~~~~h~-~~v~~v  232 (240)
                      .|.          ++.|......  ..+|++|..      +.|.+|.-     ......|.....+.... |+ .+|.+.
T Consensus        74 ~I~----------dLDWtst~d~--qsiLaVGf~------~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~-~T~h~Igds  134 (631)
T PF12234_consen   74 PIR----------DLDWTSTPDG--QSILAVGFP------HHVLLYTQLRYDYTNKGPSWAPIRKIDISS-HTPHPIGDS  134 (631)
T ss_pred             cee----------eceeeecCCC--CEEEEEEcC------cEEEEEEccchhhhcCCcccceeEEEEeec-CCCCCccce
Confidence            454          8888765441  336667665      78888853     34444566665554332 33 589999


Q ss_pred             EEecCCC
Q 026295          233 AWALNIG  239 (240)
Q Consensus       233 ~~sp~~~  239 (240)
                      .|-+||.
T Consensus       135 ~Wl~~G~  141 (631)
T PF12234_consen  135 IWLKDGT  141 (631)
T ss_pred             eEecCCe
Confidence            9999983

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.86  E-value=0.14  Score=39.33  Aligned_cols=140  Identities=16%  Similarity=0.200  Sum_probs=75.4

Q ss_pred             CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295           70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  149 (240)
                      ++.|+.|..+| +.+++.....      .......  ...|..+...|  .-+.+++-+ |+.+.++++...........
T Consensus         7 ~~~L~vGt~~G-l~~~~~~~~~------~~~~i~~--~~~I~ql~vl~--~~~~llvLs-d~~l~~~~L~~l~~~~~~~~   74 (275)
T PF00780_consen    7 GDRLLVGTEDG-LYVYDLSDPS------KPTRILK--LSSITQLSVLP--ELNLLLVLS-DGQLYVYDLDSLEPVSTSAP   74 (275)
T ss_pred             CCEEEEEECCC-EEEEEecCCc------cceeEee--cceEEEEEEec--ccCEEEEEc-CCccEEEEchhhcccccccc
Confidence            78899998888 8888883221      2222222  12388998887  655555444 59999999876322211100


Q ss_pred             Eeeeec--ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc-ceeEeeecCCCCC
Q 026295          150 QAEFQN--AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW-LPVAELALPEDRS  226 (240)
Q Consensus       150 ~~~~~~--~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~-~~~~~~~~~~~h~  226 (240)
                      ...-+.  ....+...  ..    +..|...........|+++..      ++|.||........+ ....++...    
T Consensus        75 ~~~~~~~~~~~~~~~~--~~----v~~f~~~~~~~~~~~L~va~k------k~i~i~~~~~~~~~f~~~~ke~~lp----  138 (275)
T PF00780_consen   75 LAFPKSRSLPTKLPET--KG----VSFFAVNGGHEGSRRLCVAVK------KKILIYEWNDPRNSFSKLLKEISLP----  138 (275)
T ss_pred             cccccccccccccccc--CC----eeEEeeccccccceEEEEEEC------CEEEEEEEECCcccccceeEEEEcC----
Confidence            000000  00000000  01    223331111122335555554      899999998865555 566666644    


Q ss_pred             CceEEEEEecC
Q 026295          227 DEVYAVAWALN  237 (240)
Q Consensus       227 ~~v~~v~~sp~  237 (240)
                      ..+.+++|.++
T Consensus       139 ~~~~~i~~~~~  149 (275)
T PF00780_consen  139 DPPSSIAFLGN  149 (275)
T ss_pred             CCcEEEEEeCC
Confidence            37899999854

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=96.79  E-value=0.029  Score=47.68  Aligned_cols=155  Identities=10%  Similarity=0.129  Sum_probs=85.2

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC--------------
Q 026295           20 CGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG--------------   80 (240)
Q Consensus        20 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~--------------   80 (240)
                      +|+..+.|+.++     .+..||....   +|..+..+.........+..  +  +.+.+.|+.++              
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~---~W~~~~~mp~~r~~~~~~~~--~--g~IYviGG~~~~~~~~~~~~~~~~~  423 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDD---KWKMLPDMPIALSSYGMCVL--D--QYIYIIGGRTEHIDYTSVHHMNSID  423 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCC---eEEECCCCCcccccccEEEE--C--CEEEEEeCCCccccccccccccccc
Confidence            566777777654     3778888744   67665554422222222222  3  66666676542              


Q ss_pred             ---------eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC------cEEEEEecCccccc
Q 026295           81 ---------SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG------HVKVYELLDPLILK  145 (240)
Q Consensus        81 ---------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------~v~iw~~~~~~~~~  145 (240)
                               .+..||...     ..|..+..+.........+.+    ++.+.+.|+.++      .|..||..+.   .
T Consensus       424 ~~~~~~~~~~ve~YDP~t-----d~W~~v~~m~~~r~~~~~~~~----~~~IYv~GG~~~~~~~~~~ve~Ydp~~~---~  491 (557)
T PHA02713        424 MEEDTHSSNKVIRYDTVN-----NIWETLPNFWTGTIRPGVVSH----KDDIYVVCDIKDEKNVKTCIFRYNTNTY---N  491 (557)
T ss_pred             ccccccccceEEEECCCC-----CeEeecCCCCcccccCcEEEE----CCEEEEEeCCCCCCccceeEEEecCCCC---C
Confidence                     355666654     467766666543333323333    677777777542      3567877641   1


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC--eEEEEEeecCCCCcceeE
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN--SSKVWEFDEAHNRWLPVA  217 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~--~i~iw~~~~~~~~~~~~~  217 (240)
                      +|..+..+........          .+..  ++     .+.++|+.+     +  .+-.||..+.+  |....
T Consensus       492 ~W~~~~~m~~~r~~~~----------~~~~--~~-----~iyv~Gg~~-----~~~~~e~yd~~~~~--W~~~~  541 (557)
T PHA02713        492 GWELITTTESRLSALH----------TILH--DN-----TIMMLHCYE-----SYMLQDTFNVYTYE--WNHIC  541 (557)
T ss_pred             CeeEccccCcccccce----------eEEE--CC-----EEEEEeeec-----ceeehhhcCccccc--ccchh
Confidence            3766555433222111          2222  22     278888887     6  67778877654  66543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.74  E-value=0.081  Score=44.12  Aligned_cols=143  Identities=17%  Similarity=0.230  Sum_probs=78.8

Q ss_pred             ccEEEEEEcCCCCCCEEE-EEe--cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec--CCCcEEEEEeCCC
Q 026295           57 GAILKVVWVPPEFGDAVA-CIC--SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS--STSLKLVAAYSDG  131 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~-s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~l~~~~~dg  131 (240)
                      .+++.++| -+  |+.++ +.-  .+|.+++=|-          ..+..|.    .|..+.|.|.  .+..-+++.-...
T Consensus        20 HPvhGlaW-TD--GkqVvLT~L~l~~gE~kfGds----------~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkk   82 (671)
T PF15390_consen   20 HPVHGLAW-TD--GKQVVLTDLQLHNGEPKFGDS----------KVIGQFE----HVHGLSWAPPCTADTPALLAVQHKK   82 (671)
T ss_pred             ccccceEe-cC--CCEEEEEeeeeeCCccccCCc----------cEeeccc----eeeeeeecCcccCCCCceEEEeccc
Confidence            47889999 44  65543 321  2333332221          4444443    4889999983  1222355555667


Q ss_pred             cEEEEEecCcc-cccceeEEeeeec-ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          132 HVKVYELLDPL-ILKNWQLQAEFQN-AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       132 ~v~iw~~~~~~-~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      .|.||.+.... +..++-+.++-.. ..-++-+.        ..-|+|...     +|++-...     ..--+++++..
T Consensus        83 hVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQ--------GCVWHPk~~-----iL~VLT~~-----dvSV~~sV~~d  144 (671)
T PF15390_consen   83 HVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQ--------GCVWHPKKA-----ILTVLTAR-----DVSVLPSVHCD  144 (671)
T ss_pred             eEEEEEeccCccccccceeeeeeeccCCcccCCC--------cccccCCCc-----eEEEEecC-----ceeEeeeeeeC
Confidence            89999987322 1122222222111 11122111        346999987     77776665     34455677665


Q ss_pred             CCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          210 HNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                      ..+-  ...+.    -++-|.|.+|-+||.|
T Consensus       145 ~srV--kaDi~----~~G~IhCACWT~DG~R  169 (671)
T PF15390_consen  145 SSRV--KADIK----TSGLIHCACWTKDGQR  169 (671)
T ss_pred             CceE--EEecc----CCceEEEEEecCcCCE
Confidence            5432  22333    3348999999999987

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.73  E-value=0.0071  Score=44.02  Aligned_cols=104  Identities=13%  Similarity=0.067  Sum_probs=54.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCC-CCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPP-EFGDAVACICSDGSLLLWEEIVEDAQPLQWKL   99 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   99 (240)
                      +..+++|+.+|.|.+|+....+    .....+..-...|- +-+ |. ..+.+..+++.|+.|+.|++...       +.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g----~~~d~~~s~~e~i~-~~I-p~~~~~~~~c~~~~dg~ir~~n~~p~-------k~  136 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEG----AHSDRVCSGEESID-LGI-PNGRDSSLGCVGAQDGRIRACNIKPN-------KV  136 (238)
T ss_pred             CceEEeecccceEEEecCCccc----hHHHhhhcccccce-ecc-ccccccceeEEeccCCceeeeccccC-------ce
Confidence            4578999999999999876321    11111111112222 222 22 12557888999999999998654       43


Q ss_pred             EEEeeecc-ccEEeEEEeecCCCcEEEEE--eCCCcEEEEEec
Q 026295          100 CKSFESTS-TQVLDVQFGVSSTSLKLVAA--YSDGHVKVYELL  139 (240)
Q Consensus       100 ~~~~~~~~-~~v~~~~~~~~~~~~~l~~~--~~dg~v~iw~~~  139 (240)
                      +.....|. ..+.....+.  .+.+++.+  +.|..++.|++.
T Consensus       137 ~g~~g~h~~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  137 LGYVGQHNFESGEELIVVG--SDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             eeeeccccCCCcceeEEec--CCceEEeeccccchhhhhcchh
Confidence            33333333 2222222222  34444444  455555555554

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.70  E-value=0.066  Score=45.35  Aligned_cols=80  Identities=10%  Similarity=-0.002  Sum_probs=54.0

Q ss_pred             CccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeeccCC-----CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC
Q 026295           56 AGAILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        56 ~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      ......+.++|+  |++++.++ .+.+|.+.|+......     ..+-....+..- ...-...+|.+  +|....+-..
T Consensus       320 GKsPHGV~vSPD--GkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg--~G~aytslf~  394 (635)
T PRK02888        320 PKNPHGVNTSPD--GKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFL  394 (635)
T ss_pred             CCCccceEECCC--CCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC--CCCEEEeEee
Confidence            345678999999  98877655 4889999999764210     000012223322 23445678977  8888888889


Q ss_pred             CCcEEEEEecC
Q 026295          130 DGHVKVYELLD  140 (240)
Q Consensus       130 dg~v~iw~~~~  140 (240)
                      |.+|..|++.+
T Consensus       395 dsqv~kwn~~~  405 (635)
T PRK02888        395 DSQIVKWNIEA  405 (635)
T ss_pred             cceeEEEehHH
Confidence            99999999875

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.089  Score=43.28  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-----EEEecCCeEEEEEeeeccCCCcccE
Q 026295           24 LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-----ACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        24 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      |.++.....++-.|+.     .++.+..++.+.. |.-+.+.|+..+.++     +.|-.|..|.-||.+........|.
T Consensus       349 l~~~~~~~~l~klDIE-----~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~  422 (644)
T KOG2395|consen  349 LMDGGEQDKLYKLDIE-----RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV  422 (644)
T ss_pred             eeCCCCcCcceeeecc-----cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence            3334444455555666     7788888887765 777888887433333     3455688899999886532111122


Q ss_pred             EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           99 LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      .-..+.. .....|.  ....+| ++++|+.+|.|++||-.
T Consensus       423 q~kqy~~-k~nFsc~--aTT~sG-~IvvgS~~GdIRLYdri  459 (644)
T KOG2395|consen  423 QSKQYST-KNNFSCF--ATTESG-YIVVGSLKGDIRLYDRI  459 (644)
T ss_pred             ecccccc-cccccee--eecCCc-eEEEeecCCcEEeehhh
Confidence            2222221 1222232  223344 59999999999999974

>PHA03098 kelch-like protein; Provisional

Probab=96.56  E-value=0.13  Score=43.63  Aligned_cols=162  Identities=9%  Similarity=0.042  Sum_probs=80.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC------CeEEEEEee
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD------GSLLLWEEI   88 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~   88 (240)
                      +++..+.|+.+     ..+..||....   +|.....+....... +++. .+  +.+.+.|+.+      ..+..||..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~lp~~r~~~-~~~~-~~--~~iYv~GG~~~~~~~~~~v~~yd~~  414 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGES---KWREEPPLIFPRYNP-CVVN-VN--NLIYVIGGISKNDELLKTVECFSLN  414 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCC---ceeeCCCcCcCCccc-eEEE-EC--CEEEEECCcCCCCcccceEEEEeCC
Confidence            56677777765     34667777643   566544443211111 2222 23  5666666632      356778875


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC--------cEEEEEecCcccccceeEEeeeeccccee
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG--------HVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +     ..|..+..+.........+.  .  ++.+++.|+.++        .+.+||..+    .+|..+..+....   
T Consensus       415 t-----~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~----~~W~~~~~~~~~r---  478 (534)
T PHA03098        415 T-----NKWSKGSPLPISHYGGCAIY--H--DGKIYVIGGISYIDNIKVYNIVESYNPVT----NKWTELSSLNFPR---  478 (534)
T ss_pred             C-----CeeeecCCCCccccCceEEE--E--CCEEEEECCccCCCCCcccceEEEecCCC----CceeeCCCCCccc---
Confidence            4     35666554443222222222  2  566667666432        377888765    3355443221110   


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeee
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                           ..+  ..+.+  ++.     +++.|+.++....+.|.+||..+.  .|.....++
T Consensus       479 -----~~~--~~~~~--~~~-----iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p  522 (534)
T PHA03098        479 -----INA--SLCIF--NNK-----IYVVGGDKYEYYINEIEVYDDKTN--TWTLFCKFP  522 (534)
T ss_pred             -----ccc--eEEEE--CCE-----EEEEcCCcCCcccceeEEEeCCCC--EEEecCCCc
Confidence                 000  02222  332     677777642222257788876654  476655444

>PHA02713 hypothetical protein; Provisional

Probab=96.53  E-value=0.1  Score=44.46  Aligned_cols=95  Identities=6%  Similarity=-0.040  Sum_probs=53.0

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEee
Q 026295           20 CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEI   88 (240)
Q Consensus        20 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~   88 (240)
                      ++...+.|+.+      ..+..||...+   .|..+..+...........  -+  +.+.+.|+.++     .+..||..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n---~W~~~~~m~~~R~~~~~~~--~~--g~IYviGG~~~~~~~~sve~Ydp~  375 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENK---IHVELPPMIKNRCRFSLAV--ID--DTIYAIGGQNGTNVERTIECYTMG  375 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCC---eEeeCCCCcchhhceeEEE--EC--CEEEEECCcCCCCCCceEEEEECC
Confidence            55666777653      23667777643   5655544432122222222  23  66777777654     47778876


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      .     ..|..+..+.........+.+    ++.+.+.|+.+
T Consensus       376 ~-----~~W~~~~~mp~~r~~~~~~~~----~g~IYviGG~~  408 (557)
T PHA02713        376 D-----DKWKMLPDMPIALSSYGMCVL----DQYIYIIGGRT  408 (557)
T ss_pred             C-----CeEEECCCCCcccccccEEEE----CCEEEEEeCCC
Confidence            5     467776666544333333333    67777778765

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.50  E-value=0.14  Score=37.89  Aligned_cols=134  Identities=10%  Similarity=0.026  Sum_probs=74.5

Q ss_pred             ceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-EEEecCC
Q 026295           11 GTTSSSWNYCGQRLATGSTD---------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-ACICSDG   80 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~   80 (240)
                      +.+.-..+|+|++++-...|         |.++.|-...       .+..+...-+--+.+.|+.+  .+.+ ..-+.+-
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-------~v~~i~~~v~IsNgl~Wd~d--~K~fY~iDsln~  180 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-------QVELIWNCVGISNGLAWDSD--AKKFYYIDSLNY  180 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCC-------CceeeehhccCCcccccccc--CcEEEEEccCce
Confidence            45556678999885544333         2233332221       11111111223357888766  4444 4445566


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeee----ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFES----TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +|.-||..-..+....-+.+..++.    ....-..+++.-  .|.+.+++-..++|...|+.+      ++...++.-.
T Consensus       181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~~V~~~dp~t------GK~L~eiklP  252 (310)
T KOG4499|consen  181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGGTVQKVDPTT------GKILLEIKLP  252 (310)
T ss_pred             EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCcEEEEECCCC------CcEEEEEEcC
Confidence            8888885433332122233333332    112223455655  788778888888999999988      7888888777


Q ss_pred             cceee
Q 026295          157 IDSVT  161 (240)
Q Consensus       157 ~~~v~  161 (240)
                      ...++
T Consensus       253 t~qit  257 (310)
T KOG4499|consen  253 TPQIT  257 (310)
T ss_pred             CCceE
Confidence            76666

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.49  E-value=0.16  Score=44.62  Aligned_cols=137  Identities=13%  Similarity=0.094  Sum_probs=80.8

Q ss_pred             CCCcEEEEeCCCCCCCcEEEEeEeeecCcc-EEEEEEcCCCC-----CCEEEEEecCCeEEEEEeeeccCCCcccEEEE-
Q 026295           29 TDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-ILKVVWVPPEF-----GDAVACICSDGSLLLWEEIVEDAQPLQWKLCK-  101 (240)
Q Consensus        29 ~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-----~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~-  101 (240)
                      ....|+-.|+.     .++.+..++.|... |..  +.|+..     ....+.|-.+..+..||.+....     +++. 
T Consensus       502 ~~~~ly~mDLe-----~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-----k~v~~  569 (794)
T PF08553_consen  502 NPNKLYKMDLE-----RGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-----KLVDS  569 (794)
T ss_pred             CCCceEEEecC-----CCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCC-----ceeec
Confidence            44667777777     77888888877643 444  445311     23445666788899999986421     2221 


Q ss_pred             Eee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          102 SFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       102 ~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                      ...  .......+++=..  +|. ||+|+.+|.||+||-..      ......|.+...+|.          .|.-+.+|
T Consensus       570 ~~k~Y~~~~~Fs~~aTt~--~G~-iavgs~~G~IRLyd~~g------~~AKT~lp~lG~pI~----------~iDvt~DG  630 (794)
T PF08553_consen  570 QSKQYSSKNNFSCFATTE--DGY-IAVGSNKGDIRLYDRLG------KRAKTALPGLGDPII----------GIDVTADG  630 (794)
T ss_pred             cccccccCCCceEEEecC--Cce-EEEEeCCCcEEeecccc------hhhhhcCCCCCCCee----------EEEecCCC
Confidence            111  1223445555433  555 99999999999999432      111222333344454          78888888


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      .    .+|||  ++     ..+.+++..
T Consensus       631 k----wilaT--c~-----tyLlLi~t~  647 (794)
T PF08553_consen  631 K----WILAT--CK-----TYLLLIDTL  647 (794)
T ss_pred             c----EEEEe--ec-----ceEEEEEEe
Confidence            5    23333  34     678888763

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=96.44  E-value=0.043  Score=39.01  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=32.3

Q ss_pred             eeeeEEEeCCCCC-CCCceEEEEecCCCCCCCeEEEEEeecC-CCCccee
Q 026295          169 ISASISWNPQKGE-NQGSSFVLGFNSDTPQLNSSKVWEFDEA-HNRWLPV  216 (240)
Q Consensus       169 ~~~~v~~~p~~~~-~~~~~l~~~~~dd~~~~~~i~iw~~~~~-~~~~~~~  216 (240)
                      .+..++|+|.|.. +.+.+||+-..+     +.|.||..... ...|...
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~-----~~l~l~~~~~~~~~~W~~v  131 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSN-----GRLSLYGPPGNPQGEWNRV  131 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCC-----CeEEEEecCCCccccEeee
Confidence            4458899998765 447789999998     99999997754 5555543

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.42  E-value=0.16  Score=43.53  Aligned_cols=105  Identities=13%  Similarity=0.153  Sum_probs=60.3

Q ss_pred             ceEEEEECCCCCEEEEEe------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-CeEE
Q 026295           11 GTTSSSWNYCGQRLATGS------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-GSLL   83 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-~~v~   83 (240)
                      .+...+++|+|+++|...      .|..-.||-....+  ..+.+  +.+  .....-.|+|+  |..+++.... ..++
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--~~~~l--t~g--~~~t~PsWspD--G~~lw~v~dg~~~~~  422 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--VAVQV--LEG--HSLTRPSWSLD--ADAVWVVVDGNTVVR  422 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--cceee--ecC--CCCCCceECCC--CCceEEEecCcceEE
Confidence            567889999999887765      24443444332111  11222  223  23778899998  8877766432 1222


Q ss_pred             EE-----------EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295           84 LW-----------EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY  136 (240)
Q Consensus        84 iw-----------d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  136 (240)
                      +.           ++..+       ....   .....|..+.|+|  +|..++... +|+|.+-
T Consensus       423 v~~~~~~gql~~~~vd~g-------e~~~---~~~g~Issl~wSp--DG~RiA~i~-~g~v~Va  473 (591)
T PRK13616        423 VIRDPATGQLARTPVDAS-------AVAS---RVPGPISELQLSR--DGVRAAMII-GGKVYLA  473 (591)
T ss_pred             EeccCCCceEEEEeccCc-------hhhh---ccCCCcCeEEECC--CCCEEEEEE-CCEEEEE
Confidence            22           22111       1101   2245799999999  999887766 4777663

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.31  E-value=0.15  Score=41.87  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=58.9

Q ss_pred             EEEEECCCCCEEEEE-eCCCcEEEE--eCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE-ecCCeEEEEEee
Q 026295           13 TSSSWNYCGQRLATG-STDGTLSIF--DSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI-CSDGSLLLWEEI   88 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~-~~d~~i~iw--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~   88 (240)
                      ..-+|+|||++|+-+ ..||...||  |+...     . ...+..-.+.-..=.|+|+  |+.++-. +..|.-.||-..
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~-----~-~~~Lt~~~gi~~~Ps~spd--G~~ivf~Sdr~G~p~I~~~~  312 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK-----N-LPRLTNGFGINTSPSWSPD--GSKIVFTSDRGGRPQIYLYD  312 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCC-----c-ceecccCCccccCccCCCC--CCEEEEEeCCCCCcceEEEC
Confidence            345899999876655 456665555  55432     1 2222222222236678999  8877654 445554454443


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-Cc--EEEEEecC
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GH--VKVYELLD  140 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~--v~iw~~~~  140 (240)
                      ....     .. ..+......-..-.|+|  +|.+++..+.. |.  |.+.++.+
T Consensus       313 ~~g~-----~~-~riT~~~~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         313 LEGS-----QV-TRLTFSGGGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CCCC-----ce-eEeeccCCCCcCccCCC--CCCEEEEEeccCCceeeEEeccCC
Confidence            2211     22 22221112222677888  99988877743 44  44444443

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.21  E-value=0.54  Score=38.50  Aligned_cols=67  Identities=15%  Similarity=0.264  Sum_probs=47.1

Q ss_pred             EEEECCCCCEEEEEeCC-----------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295           14 SSSWNYCGQRLATGSTD-----------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .++.+|.|..+|....+           ..|+||+..+      +++.++.-..+.+.++.|+.+   ..|+....||.+
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG------~ll~~i~w~~~~iv~~~wt~~---e~LvvV~~dG~v  103 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSG------KLLSSIPWDSGRIVGMGWTDD---EELVVVQSDGTV  103 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCC------CEeEEEEECCCCEEEEEECCC---CeEEEEEcCCEE
Confidence            35667777777777554           1488888764      345554433378999999775   456666789999


Q ss_pred             EEEEeee
Q 026295           83 LLWEEIV   89 (240)
Q Consensus        83 ~iwd~~~   89 (240)
                      ++||+..
T Consensus       104 ~vy~~~G  110 (410)
T PF04841_consen  104 RVYDLFG  110 (410)
T ss_pred             EEEeCCC
Confidence            9999864

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.19  E-value=0.4  Score=36.75  Aligned_cols=156  Identities=21%  Similarity=0.274  Sum_probs=85.8

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCccc
Q 026295           18 NYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQW   97 (240)
Q Consensus        18 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~   97 (240)
                      ...+++|+.|..+| +.+++....    .......+  ...|..+...+.  -+.++.-+ |+.+.++++..........
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~----~~~~~i~~--~~~I~ql~vl~~--~~~llvLs-d~~l~~~~L~~l~~~~~~~   73 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDP----SKPTRILK--LSSITQLSVLPE--LNLLLVLS-DGQLYVYDLDSLEPVSTSA   73 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCC----ccceeEee--cceEEEEEEecc--cCEEEEEc-CCccEEEEchhhccccccc
Confidence            34678999999998 889988322    12222222  233999999887  55555543 6999999987653211000


Q ss_pred             EEEE-------EeeeccccEEeEE-EeecCCCcEEEEEeCCCcEEEEEecCcccccce-eEEeeeecccceeeccccccc
Q 026295           98 KLCK-------SFESTSTQVLDVQ-FGVSSTSLKLVAAYSDGHVKVYELLDPLILKNW-QLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        98 ~~~~-------~~~~~~~~v~~~~-~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      ....       ........+...+ -.......+|+++. ..+|.+|....+..  .+ ....++... ..+.       
T Consensus        74 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~--~f~~~~ke~~lp-~~~~-------  142 (275)
T PF00780_consen   74 PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRN--SFSKLLKEISLP-DPPS-------  142 (275)
T ss_pred             cccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcc--cccceeEEEEcC-CCcE-------
Confidence            0000       0011223344443 11222334444444 45899999875311  13 344444433 2223       


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                         +++|..+       .+++|..      +...+.|+.++.
T Consensus       143 ---~i~~~~~-------~i~v~~~------~~f~~idl~~~~  168 (275)
T PF00780_consen  143 ---SIAFLGN-------KICVGTS------KGFYLIDLNTGS  168 (275)
T ss_pred             ---EEEEeCC-------EEEEEeC------CceEEEecCCCC
Confidence               7888843       5777775      568888887543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.93  E-value=0.54  Score=36.04  Aligned_cols=183  Identities=8%  Similarity=-0.007  Sum_probs=100.0

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +++.+....|.++.|+|+.+.|++......--|+=-.     +++.+.++.-. -...-.|.|..+  +++.++-=.+..
T Consensus        79 kpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~-----~GdlirtiPL~g~~DpE~Ieyig~--n~fvi~dER~~~  151 (316)
T COG3204          79 KPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTK-----EGDLIRTIPLTGFSDPETIEYIGG--NQFVIVDERDRA  151 (316)
T ss_pred             cccccccccccceeeCCCcceEEEecCCCceEEEEec-----CCceEEEecccccCChhHeEEecC--CEEEEEehhcce
Confidence            3466666679999999999888777766665555433     44556555410 122335677666  666666666777


Q ss_pred             EEEEEeeeccCC--Cccc-EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           82 LLLWEEIVEDAQ--PLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        82 v~iwd~~~~~~~--~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +.++.+......  .... -++..........-.++|+|  ....|..+=...-+.||...............   .+..
T Consensus       152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~---~~~~  226 (316)
T COG3204         152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSVHASL---DPTA  226 (316)
T ss_pred             EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCccccccccc---Cccc
Confidence            877776543210  0000 01111112245677899998  66667777777778888876422111111000   0000


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      . .  .-..-.+..+.|++....    +|+.+..+     +.+.-.|....
T Consensus       227 ~-~--~~f~~DvSgl~~~~~~~~----LLVLS~ES-----r~l~Evd~~G~  265 (316)
T COG3204         227 D-R--DLFVLDVSGLEFNAITNS----LLVLSDES-----RRLLEVDLSGE  265 (316)
T ss_pred             c-c--ceEeeccccceecCCCCc----EEEEecCC-----ceEEEEecCCC
Confidence            0 0  000112237778877652    55555555     77776666543

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.91  E-value=0.037  Score=28.99  Aligned_cols=30  Identities=17%  Similarity=0.186  Sum_probs=25.5

Q ss_pred             cceEEEEECCCC---CEEEEEeCCCcEEEEeCC
Q 026295           10 KGTTSSSWNYCG---QRLATGSTDGTLSIFDSP   39 (240)
Q Consensus        10 ~~v~~~~~s~~~---~~l~~~~~d~~i~iw~~~   39 (240)
                      ++|++++|+|..   .+|+-+-..+.|.|+|+.
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R   33 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR   33 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence            579999999844   588888888999999998

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=95.91  E-value=0.36  Score=40.42  Aligned_cols=151  Identities=8%  Similarity=-0.016  Sum_probs=78.1

Q ss_pred             CCCCEEEEEeCC--CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC---eEEEEEeeeccCC
Q 026295           19 YCGQRLATGSTD--GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG---SLLLWEEIVEDAQ   93 (240)
Q Consensus        19 ~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~   93 (240)
                      -++...+.|+.+  ..+..|+...+   .|..+..+.........+.  -+  |.+.+.|+.++   .+..||...    
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n---~W~~~~~l~~~r~~~~~~~--~~--g~IYviGG~~~~~~~ve~ydp~~----  385 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDA---AWVNMPSLLKPRCNPAVAS--IN--NVIYVIGGHSETDTTTEYLLPNH----  385 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCC---eEEECCCCCCCCcccEEEE--EC--CEEEEecCcCCCCccEEEEeCCC----
Confidence            356667777754  35777876533   5666555542121122222  23  66667776553   466777654    


Q ss_pred             CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeE
Q 026295           94 PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASI  173 (240)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v  173 (240)
                       ..|.....+.........+.+    ++.+.+.|+   .+.+||..+    .+|.....+.......           .+
T Consensus       386 -~~W~~~~~m~~~r~~~~~~~~----~~~IYv~GG---~~e~ydp~~----~~W~~~~~m~~~r~~~-----------~~  442 (480)
T PHA02790        386 -DQWQFGPSTYYPHYKSCALVF----GRRLFLVGR---NAEFYCESS----NTWTLIDDPIYPRDNP-----------EL  442 (480)
T ss_pred             -CEEEeCCCCCCccccceEEEE----CCEEEEECC---ceEEecCCC----CcEeEcCCCCCCcccc-----------EE
Confidence             457765555433333323333    667666664   577888865    3476554432211111           12


Q ss_pred             EEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          174 SWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       174 ~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      +- .++.     +.++|+.+.......|..||..++
T Consensus       443 ~v-~~~~-----IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        443 II-VDNK-----LLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             EE-ECCE-----EEEECCcCCCcccceEEEEECCCC
Confidence            21 1222     777787642222246777776654

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.88  E-value=0.058  Score=48.25  Aligned_cols=119  Identities=18%  Similarity=0.033  Sum_probs=74.5

Q ss_pred             ceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCC---cEEEEeE---eeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295           11 GTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSS---SFTCNLK---TKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~---~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+..+...+|+...++-  +.+-.|..||+..-...   +..++..   ......-..++.|+|. .....+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~-vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPL-VPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCC-ccchhhhhccccch
Confidence            45566667777655544  33347888998632111   1111111   1122234567889886 34556777789999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      ++..+....      .....+ .....+++++|+|  .|..++.|-..|++.-|...
T Consensus       181 ~V~~~~~~~------~~v~s~-p~t~~~Tav~WSp--rGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  181 RVKSTKQLA------QNVTSF-PVTNSQTAVLWSP--RGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhh------hhhccc-CcccceeeEEecc--ccceeeEecCCCeEEEeecc
Confidence            888775431      112222 2346789999999  99999999999999888754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.81  E-value=0.82  Score=37.20  Aligned_cols=98  Identities=14%  Similarity=0.036  Sum_probs=56.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +..+..++.+|.+..+|..     +++.+-....  .....+..  .  +..++.++.++.+...|..++       +.+
T Consensus       256 ~~~vy~~~~~g~l~ald~~-----tG~~~W~~~~--~~~~~~~~--~--~~~vy~~~~~g~l~ald~~tG-------~~~  317 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLR-----SGQIVWKREY--GSVNDFAV--D--GGRIYLVDQNDRVYALDTRGG-------VEL  317 (394)
T ss_pred             CCEEEEEEcCCeEEEEECC-----CCCEEEeecC--CCccCcEE--E--CCEEEEEcCCCeEEEEECCCC-------cEE
Confidence            4566677778888888887     3333332221  11111111  2  556777778999999998765       222


Q ss_pred             EEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295          101 KSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus       101 ~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      -...... ....+...    .+.+++.++.+|.|.+.|..+
T Consensus       318 W~~~~~~~~~~~sp~v----~~g~l~v~~~~G~l~~ld~~t  354 (394)
T PRK11138        318 WSQSDLLHRLLTAPVL----YNGYLVVGDSEGYLHWINRED  354 (394)
T ss_pred             EcccccCCCcccCCEE----ECCEEEEEeCCCEEEEEECCC
Confidence            2111111 11122222    234578889999999999877

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.81  E-value=0.89  Score=37.59  Aligned_cols=96  Identities=21%  Similarity=0.294  Sum_probs=54.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec-------cCC
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE-------DAQ   93 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-------~~~   93 (240)
                      |.+|+..+.+ .|.+||..     +.+.+..+..  .+|..+.|+++  +.+++..+.+ .+.+++....       ++.
T Consensus       117 G~LL~~~~~~-~i~~yDw~-----~~~~i~~i~v--~~vk~V~Ws~~--g~~val~t~~-~i~il~~~~~~~~~~~~~g~  185 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWE-----TGKLIRRIDV--SAVKYVIWSDD--GELVALVTKD-SIYILKYNLEAVAAIPEEGV  185 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TT-----T--EEEEESS---E-EEEEE-TT--SSEEEEE-S--SEEEEEE-HHHHHHBTTTB-
T ss_pred             CcEEEEECCC-CEEEEEhh-----HcceeeEEec--CCCcEEEEECC--CCEEEEEeCC-eEEEEEecchhcccccccCc
Confidence            7778777664 89999998     6678887764  34899999999  9999888755 6777776532       011


Q ss_pred             CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEE
Q 026295           94 PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKV  135 (240)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~i  135 (240)
                      +..+..+.   .-...|.+..|.-  +  .++-.+.. .++.
T Consensus       186 e~~f~~~~---E~~~~IkSg~W~~--d--~fiYtT~~-~lkY  219 (443)
T PF04053_consen  186 EDAFELIH---EISERIKSGCWVE--D--CFIYTTSN-HLKY  219 (443)
T ss_dssp             GGGEEEEE---EE-S--SEEEEET--T--EEEEE-TT-EEEE
T ss_pred             hhceEEEE---EecceeEEEEEEc--C--EEEEEcCC-eEEE
Confidence            11223333   2246788889953  3  55555555 7776

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.81  E-value=0.88  Score=39.13  Aligned_cols=151  Identities=11%  Similarity=0.113  Sum_probs=72.5

Q ss_pred             ccEEEEEEcCCCCCCEEEEEe------cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295           57 GAILKVVWVPPEFGDAVACIC------SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      ..+.+.+.+|+  |+.++..-      .|..-.||-...+.      .......+  .....-.|+|  +|..+.+....
T Consensus       350 ~~vsspaiSpd--G~~vA~v~~~~~~~~d~~s~Lwv~~~gg------~~~~lt~g--~~~t~PsWsp--DG~~lw~v~dg  417 (591)
T PRK13616        350 GNITSAALSRS--GRQVAAVVTLGRGAPDPASSLWVGPLGG------VAVQVLEG--HSLTRPSWSL--DADAVWVVVDG  417 (591)
T ss_pred             cCcccceECCC--CCEEEEEEeecCCCCCcceEEEEEeCCC------cceeeecC--CCCCCceECC--CCCceEEEecC
Confidence            45778899999  88777654      24444555443221      11111222  2367789999  88877777543


Q ss_pred             CcE-EEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-
Q 026295          131 GHV-KVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE-  208 (240)
Q Consensus       131 g~v-~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-  208 (240)
                      ..+ ++.+....     .++. .+.........  .....+..+.|+|++.     .++.-. +     +.|++=-+.. 
T Consensus       418 ~~~~~v~~~~~~-----gql~-~~~vd~ge~~~--~~~g~Issl~wSpDG~-----RiA~i~-~-----g~v~Va~Vvr~  478 (591)
T PRK13616        418 NTVVRVIRDPAT-----GQLA-RTPVDASAVAS--RVPGPISELQLSRDGV-----RAAMII-G-----GKVYLAVVEQT  478 (591)
T ss_pred             cceEEEeccCCC-----ceEE-EEeccCchhhh--ccCCCcCeEEECCCCC-----EEEEEE-C-----CEEEEEEEEeC
Confidence            232 22221110     1110 00000000000  0011233899999998     555554 3     7777743322 


Q ss_pred             CCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          209 AHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ......+........+-...+.+++|.+++
T Consensus       479 ~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~  508 (591)
T PRK13616        479 EDGQYALTNPREVGPGLGDTAVSLDWRTGD  508 (591)
T ss_pred             CCCceeecccEEeecccCCccccceEecCC
Confidence            111222211111111233346889998876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.82  Score=37.08  Aligned_cols=110  Identities=16%  Similarity=0.151  Sum_probs=73.2

Q ss_pred             EEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---CCeEEEEEee
Q 026295           13 TSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---DGSLLLWEEI   88 (240)
Q Consensus        13 ~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iwd~~   88 (240)
                      ..+++++.++ ..++...+..|.+.|..     +.+....... ......+.++++  +..+..+..   ++++.+.|..
T Consensus        77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~-----~~~~~~~~~v-G~~P~~~~~~~~--~~~vYV~n~~~~~~~vsvid~~  148 (381)
T COG3391          77 AGVAVNPAGNKVYVTTGDSNTVSVIDTA-----TNTVLGSIPV-GLGPVGLAVDPD--GKYVYVANAGNGNNTVSVIDAA  148 (381)
T ss_pred             cceeeCCCCCeEEEecCCCCeEEEEcCc-----ccceeeEeee-ccCCceEEECCC--CCEEEEEecccCCceEEEEeCC
Confidence            3567888887 44455556899999965     3334443332 225668999998  766666554   5677777776


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecC
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLD  140 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~  140 (240)
                      ..       ...........+ ..++++|  +|.++.... .++.|.+.|...
T Consensus       149 t~-------~~~~~~~vG~~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~  191 (381)
T COG3391         149 TN-------KVTATIPVGNTP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSG  191 (381)
T ss_pred             CC-------eEEEEEecCCCc-ceEEECC--CCCeEEEEecCCCeEEEEeCCC
Confidence            55       555554433234 7899999  888665555 788999999765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.75  E-value=0.81  Score=36.72  Aligned_cols=95  Identities=15%  Similarity=0.055  Sum_probs=43.3

Q ss_pred             EECCCCCEE-EEEeCCCcEEEE--eCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295           16 SWNYCGQRL-ATGSTDGTLSIF--DSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        16 ~~s~~~~~l-~~~~~d~~i~iw--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   92 (240)
                      +|.++|++| +.+..||.-.+|  |+.     +.+..+...+-........++++  .+.++-......|+--|+.+.  
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~-----t~~i~QLTdg~g~~~~g~~~s~~--~~~~~Yv~~~~~l~~vdL~T~--  112 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLA-----TGEITQLTDGPGDNTFGGFLSPD--DRALYYVKNGRSLRRVDLDTL--  112 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETT-----T-EEEE---SS-B-TTT-EE-TT--SSEEEEEETTTEEEEEETTT---
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcc-----cCEEEECccCCCCCccceEEecC--CCeEEEEECCCeEEEEECCcC--
Confidence            677888654 445556655554  555     44444333321122335666677  666655444567777777765  


Q ss_pred             CCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295           93 QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  124 (240)
                           +....+.-....+-...|..+.++..+
T Consensus       113 -----e~~~vy~~p~~~~g~gt~v~n~d~t~~  139 (386)
T PF14583_consen  113 -----EERVVYEVPDDWKGYGTWVANSDCTKL  139 (386)
T ss_dssp             ------EEEEEE--TTEEEEEEEEE-TTSSEE
T ss_pred             -----cEEEEEECCcccccccceeeCCCccEE
Confidence                 333333334455555677654456544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.63  E-value=0.49  Score=38.46  Aligned_cols=106  Identities=8%  Similarity=0.065  Sum_probs=57.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEE------EEEEcCCCCCCEEEEEecCCeEEEEEeeeccC
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAIL------KVVWVPPEFGDAVACICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~------~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~   92 (240)
                      .+.++.+++.++.+.-+|..     +++.+-...... ....      .+.-.|...+..++.++.++.+..+|..++. 
T Consensus        68 ~~~~vy~~~~~g~l~ald~~-----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~-  141 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDAD-----TGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGE-  141 (394)
T ss_pred             ECCEEEEECCCCeEEEEECC-----CCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCC-
Confidence            45677778888888888887     444444332111 0000      0000111114556777788999999987662 


Q ss_pred             CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           93 QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        93 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                        ..|+    .+...........    .+..++.++.++.+.-+|..+.
T Consensus       142 --~~W~----~~~~~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG  180 (394)
T PRK11138        142 --VAWQ----TKVAGEALSRPVV----SDGLVLVHTSNGMLQALNESDG  180 (394)
T ss_pred             --Cccc----ccCCCceecCCEE----ECCEEEEECCCCEEEEEEccCC
Confidence              2233    2221111111112    2334667778899999998873

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.59  E-value=1.2  Score=37.58  Aligned_cols=125  Identities=10%  Similarity=0.143  Sum_probs=68.5

Q ss_pred             CccEEEEEEcCCCC---CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec-ccc--EEeEEEeecCCCcEEEEEeC
Q 026295           56 AGAILKVVWVPPEF---GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST-STQ--VLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        56 ~~~v~~~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~--v~~~~~~~~~~~~~l~~~~~  129 (240)
                      -..|+.+.|.|...   ..+||. -....|.+|.+.....+...|..-++..-. .-+  -....|+|  ....|++-+.
T Consensus        56 FEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~  132 (671)
T PF15390_consen   56 FEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTA  132 (671)
T ss_pred             cceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEec
Confidence            34588999998721   134544 456789999987443333334433333211 111  24567999  7776666555


Q ss_pred             CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      ...-.+++.+.+.    -.....+ ...+.|.          |.+|.+++.   +..+|+|+.      =.-+|||-.
T Consensus       133 ~dvSV~~sV~~d~----srVkaDi-~~~G~Ih----------CACWT~DG~---RLVVAvGSs------LHSyiWd~~  186 (671)
T PF15390_consen  133 RDVSVLPSVHCDS----SRVKADI-KTSGLIH----------CACWTKDGQ---RLVVAVGSS------LHSYIWDSA  186 (671)
T ss_pred             CceeEeeeeeeCC----ceEEEec-cCCceEE----------EEEecCcCC---EEEEEeCCe------EEEEEecCc
Confidence            4433456665421    1222233 2233444          899999987   333344443      467778753

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.49  E-value=0.94  Score=35.69  Aligned_cols=150  Identities=11%  Similarity=0.149  Sum_probs=86.3

Q ss_pred             CCEEEEEeC----------CCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           21 GQRLATGST----------DGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        21 ~~~l~~~~~----------d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ..+|+.|..          .|.|.+|++.....  ...+.+.... ..++|++++-. .  +.++++.  ...|.+|++.
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~-~~g~V~ai~~~-~--~~lv~~~--g~~l~v~~l~  115 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE-VKGPVTAICSF-N--GRLVVAV--GNKLYVYDLD  115 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE-ESS-EEEEEEE-T--TEEEEEE--TTEEEEEEEE
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe-ecCcceEhhhh-C--CEEEEee--cCEEEEEEcc
Confidence            467877753          28899999985210  1233343333 47889999865 3  4544443  5799999998


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      ...    .+.....+... ..+.++..    .+.++++|.....+.++..+..  ..+...+.. ......+.       
T Consensus       116 ~~~----~l~~~~~~~~~-~~i~sl~~----~~~~I~vgD~~~sv~~~~~~~~--~~~l~~va~-d~~~~~v~-------  176 (321)
T PF03178_consen  116 NSK----TLLKKAFYDSP-FYITSLSV----FKNYILVGDAMKSVSLLRYDEE--NNKLILVAR-DYQPRWVT-------  176 (321)
T ss_dssp             TTS----SEEEEEEE-BS-SSEEEEEE----ETTEEEEEESSSSEEEEEEETT--TE-EEEEEE-ESS-BEEE-------
T ss_pred             Ccc----cchhhheecce-EEEEEEec----cccEEEEEEcccCEEEEEEEcc--CCEEEEEEe-cCCCccEE-------
Confidence            752    12333333332 35555554    4558999998888998876541  011122111 11122233       


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                         ++.+-++..     .++++..+     |.+.++....
T Consensus       177 ---~~~~l~d~~-----~~i~~D~~-----gnl~~l~~~~  203 (321)
T PF03178_consen  177 ---AAEFLVDED-----TIIVGDKD-----GNLFVLRYNP  203 (321)
T ss_dssp             ---EEEEE-SSS-----EEEEEETT-----SEEEEEEE-S
T ss_pred             ---EEEEecCCc-----EEEEEcCC-----CeEEEEEECC
Confidence               677776554     68888887     9999999874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.45  E-value=1.6  Score=38.46  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=53.5

Q ss_pred             cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc-ccccceeE-Eeeeecccceeec---cccccceeeeEEEeCCCCC
Q 026295          107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP-LILKNWQL-QAEFQNAIDSVTM---FRKASCISASISWNPQKGE  181 (240)
Q Consensus       107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~-~~~~~~~~-~~~~~~~~~~v~~---~~~~~~~~~~v~~~p~~~~  181 (240)
                      .-.|..|.++|  +|.+++..+..| |.|-.+... ......+. ...+.....++..   ..+....+..+.|+|.+..
T Consensus        84 ~f~v~~i~~n~--~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNP--TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECC--CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence            35688899988  999999888866 444444321 10000000 0011111111100   0111224458899998642


Q ss_pred             CCCceEEEEecCCCCCCCeEEEEEeecCCCCc
Q 026295          182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW  213 (240)
Q Consensus       182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~  213 (240)
                        +..|++=.+|     +++|+||+......+
T Consensus       161 --~~~l~vLtsd-----n~lR~y~~~~~~~p~  185 (717)
T PF10168_consen  161 --DSHLVVLTSD-----NTLRLYDISDPQHPW  185 (717)
T ss_pred             --CCeEEEEecC-----CEEEEEecCCCCCCe
Confidence              3478888888     999999997654443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.40  E-value=0.88  Score=37.25  Aligned_cols=113  Identities=20%  Similarity=0.137  Sum_probs=62.0

Q ss_pred             eEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCC-----
Q 026295           12 TTSSSWNYCGQRLATG-STDG----TLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDG-----   80 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~-~~d~----~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----   80 (240)
                      +...+++|+|+++|-+ +..|    .++++|+.     +++.+.. +..  .....+.|.++  ++.|+....+.     
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~-----tg~~l~d~i~~--~~~~~~~W~~d--~~~~~y~~~~~~~~~~  196 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLE-----TGKFLPDGIEN--PKFSSVSWSDD--GKGFFYTRFDEDQRTS  196 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETT-----TTEEEEEEEEE--EESEEEEECTT--SSEEEEEECSTTTSS-
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECC-----CCcCcCCcccc--cccceEEEeCC--CCEEEEEEeCcccccc
Confidence            3367899999988866 3434    49999998     4444432 222  11223999998  77766554333     


Q ss_pred             ------eEEEEEeeeccCCCcccEEEEEeeeccc--cEEeEEEeecCCCcEEEEEe-CC---CcEEEEEecC
Q 026295           81 ------SLLLWEEIVEDAQPLQWKLCKSFESTST--QVLDVQFGVSSTSLKLVAAY-SD---GHVKVYELLD  140 (240)
Q Consensus        81 ------~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~-~d---g~v~iw~~~~  140 (240)
                            .|..|.+-+...     .-...+.....  ....+..++  ++++++... ..   ..+.+.++..
T Consensus       197 ~~~~~~~v~~~~~gt~~~-----~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  197 DSGYPRQVYRHKLGTPQS-----EDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             CCGCCEEEEEEETTS-GG-----G-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             cCCCCcEEEEEECCCChH-----hCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccc
Confidence                  256666533211     21223333222  245677777  888766543 22   2366666654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=95.28  E-value=1.2  Score=35.48  Aligned_cols=109  Identities=12%  Similarity=0.125  Sum_probs=63.0

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEE-EeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSI-FDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~i-w~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      +.+..+.+.+++.+++++.. |.+.. ++-..   .+++.+..  .-...++.+.+.++  +..++.+ ..|.+.+-...
T Consensus       173 g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg---~tW~~~~~--~~~~~l~~i~~~~~--g~~~~vg-~~G~~~~~s~d  243 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQ---TAWTPHQR--NSSRRLQSMGFQPD--GNLWMLA-RGGQIRFNDPD  243 (334)
T ss_pred             ceEEEEEECCCCeEEEEeCC-ceEEEEcCCCC---CeEEEeeC--CCcccceeeeEcCC--CCEEEEe-cCCEEEEccCC
Confidence            46888999998877766654 65432 22111   14655432  23467889999888  7766654 56766432222


Q ss_pred             eccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295           89 VEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK  134 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  134 (240)
                      .    +..|+.+..- ......+..+.+.|  ++. +..++.+|.|.
T Consensus       244 ~----G~sW~~~~~~~~~~~~~l~~v~~~~--~~~-~~~~G~~G~v~  283 (334)
T PRK13684        244 D----LESWSKPIIPEITNGYGYLDLAYRT--PGE-IWAGGGNGTLL  283 (334)
T ss_pred             C----CCccccccCCccccccceeeEEEcC--CCC-EEEEcCCCeEE
Confidence            2    2556643221 11234577888887  776 44555677554

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.21  E-value=0.96  Score=34.14  Aligned_cols=98  Identities=13%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE-EEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL-KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      -|++++.|...|.+++.+..     ++.....+..- +.|. .....++  +.++..++.|+.....|.+..       .
T Consensus        62 vgdfVV~GCy~g~lYfl~~~-----tGs~~w~f~~~-~~vk~~a~~d~~--~glIycgshd~~~yalD~~~~-------~  126 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVK-----TGSQIWNFVIL-ETVKVRAQCDFD--GGLIYCGSHDGNFYALDPKTY-------G  126 (354)
T ss_pred             ECCEEEEEEccCcEEEEEec-----chhheeeeeeh-hhhccceEEcCC--CceEEEecCCCcEEEeccccc-------c
Confidence            46688889999999988887     66556655542 2232 2334466  889999999999999998765       5


Q ss_pred             EEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295           99 LCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK  134 (240)
Q Consensus        99 ~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  134 (240)
                      ++...+.......+-+..|  ....|..+...|.|.
T Consensus       127 cVykskcgG~~f~sP~i~~--g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen  127 CVYKSKCGGGTFVSPVIAP--GDGSLYAAITAGAVL  160 (354)
T ss_pred             eEEecccCCceeccceecC--CCceEEEEeccceEE
Confidence            6665543323223333443  222244444445443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.18  E-value=1.1  Score=34.43  Aligned_cols=56  Identities=16%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             EECCCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295           16 SWNYCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus        16 ~~s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      .|||||.+|...-.|     |.|-|||...    ..+.+..+..|.-.-..+.|.++  |..++.+.
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~----~fqrvgE~~t~GiGpHev~lm~D--Grtlvvan  180 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDARE----GFQRVGEFSTHGIGPHEVTLMAD--GRTLVVAN  180 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEeccc----ccceecccccCCcCcceeEEecC--CcEEEEeC
Confidence            589999988877554     6799999974    45667788888888889999999  99888763

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.15  E-value=2.1  Score=37.74  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-C--------CCcEEEEeEe--------eecCccEEEEEEcCCC-CCCE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDP-S--------SSSFTCNLKT--------KVHAGAILKVVWVPPE-FGDA   72 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~-~--------~~~~~~~~~~--------~~h~~~v~~~~~~~~~-~~~~   72 (240)
                      .|..+.++|+|++||..|..|.+ |-.+... +        ..+..| +++        ......|..+.|.|.. .+..
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~C-rt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINC-RTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeE-EEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            68899999999999999986544 4444321 0        001111 111        1234578999999872 2467


Q ss_pred             EEEEecCCeEEEEEeeec
Q 026295           73 VACICSDGSLLLWEEIVE   90 (240)
Q Consensus        73 l~s~~~d~~v~iwd~~~~   90 (240)
                      |+.-..|+.+|+||+...
T Consensus       164 l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             EEEEecCCEEEEEecCCC
Confidence            888889999999999653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.12  E-value=0.33  Score=39.56  Aligned_cols=45  Identities=13%  Similarity=-0.023  Sum_probs=35.9

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG   57 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~   57 (240)
                      ....+.+++.+|.+++.|+...-|.|.++|+.     ....++.+++..+
T Consensus       306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~-----~~~vvrmWKGYRd  350 (415)
T PF14655_consen  306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVA-----RGIVVRMWKGYRD  350 (415)
T ss_pred             CCceEEEEEECCCCCEEEEEcCCCcEEEEECC-----CChhhhhhccCcc
Confidence            34568899999999999998888999999998     5566666766544

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.26  Score=44.39  Aligned_cols=145  Identities=13%  Similarity=0.105  Sum_probs=75.8

Q ss_pred             cEEEEEEcCCCCCCEEEE--EecCCeEEEEEeeeccCCC-cccEEEEEe---eeccccEEeEEEeecCCCcEEEEEeCCC
Q 026295           58 AILKVVWVPPEFGDAVAC--ICSDGSLLLWEEIVEDAQP-LQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAAYSDG  131 (240)
Q Consensus        58 ~v~~~~~~~~~~~~~l~s--~~~d~~v~iwd~~~~~~~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg  131 (240)
                      ++..+...++  +...++  .+.+-.|..||++.-.... .+..++..-   ........++.|.|..... .++...|+
T Consensus       102 pi~~~v~~~D--~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n-~av~l~dl  178 (1405)
T KOG3630|consen  102 PIVIFVCFHD--ATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLN-SAVDLSDL  178 (1405)
T ss_pred             cceEEEeccC--CceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccch-hhhhcccc
Confidence            3444555566  543333  3333478889986532110 001111111   1122344678888743333 56777889


Q ss_pred             cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                      .|++..+...     ...+..+.           ......+++|+|.+.     -+++|...     |++.-|...-...
T Consensus       179 sl~V~~~~~~-----~~~v~s~p-----------~t~~~Tav~WSprGK-----Ql~iG~nn-----Gt~vQy~P~leik  232 (1405)
T KOG3630|consen  179 SLRVKSTKQL-----AQNVTSFP-----------VTNSQTAVLWSPRGK-----QLFIGRNN-----GTEVQYEPSLEIK  232 (1405)
T ss_pred             chhhhhhhhh-----hhhhcccC-----------cccceeeEEeccccc-----eeeEecCC-----CeEEEeeccccee
Confidence            9988876541     11111111           111223899999998     68999988     9999988654321


Q ss_pred             CcceeEeeecCCCCCCceEEEEEe
Q 026295          212 RWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       212 ~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      ......  +..+  ...|.+|+|-
T Consensus       233 ~~ip~P--p~~e--~yrvl~v~Wl  252 (1405)
T KOG3630|consen  233 SEIPEP--PVEE--NYRVLSVTWL  252 (1405)
T ss_pred             ecccCC--CcCC--CcceeEEEEe
Confidence            111111  1111  2378888884

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.02  E-value=1.4  Score=34.80  Aligned_cols=114  Identities=14%  Similarity=0.025  Sum_probs=71.9

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      .+++|++++-- .+ +|+.+.. +.|.+|++....  .......+..+ ..+.++..  .  +++++.|.....+.++.+
T Consensus        87 ~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~--~l~~~~~~~~~-~~i~sl~~--~--~~~I~vgD~~~sv~~~~~  156 (321)
T PF03178_consen   87 VKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSK--TLLKKAFYDSP-FYITSLSV--F--KNYILVGDAMKSVSLLRY  156 (321)
T ss_dssp             ESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTS--SEEEEEEE-BS-SSEEEEEE--E--TTEEEEEESSSSEEEEEE
T ss_pred             ecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcc--cchhhheecce-EEEEEEec--c--ccEEEEEEcccCEEEEEE
Confidence            46788888644 34 4555554 799999998652  24444444332 35555554  3  678889988888888876


Q ss_pred             eeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           88 IVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      +...      ..+..+.  .....+.++.|-+  ++..++.+..+|.+.++...
T Consensus       157 ~~~~------~~l~~va~d~~~~~v~~~~~l~--d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  157 DEEN------NKLILVARDYQPRWVTAAEFLV--DEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             ETTT------E-EEEEEEESS-BEEEEEEEE---SSSEEEEEETTSEEEEEEE-
T ss_pred             EccC------CEEEEEEecCCCccEEEEEEec--CCcEEEEEcCCCeEEEEEEC
Confidence            5421      2222222  2356688888886  55689999999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.93  E-value=0.64  Score=37.95  Aligned_cols=124  Identities=6%  Similarity=0.037  Sum_probs=69.6

Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      ..|.+.-|.......   . .++.--...++.|.++.|++  |.+.+|+...+.+|.+++...++..  .+..++-+...
T Consensus        41 rSggatgvvvkgpnd---D-VpiSfdm~d~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~--l~~~~~ck~k~  112 (657)
T KOG2377|consen   41 RSGGATGVVVKGPND---D-VPISFDMDDKGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQ--LEYTQECKTKN  112 (657)
T ss_pred             ecCCeeEEEEeCCCC---C-CCceeeecCCCceeEEEecc--CcceEEEEecCceEEEEecCCCchh--hHHHHHhccCc
Confidence            345566676654322   1 12222223457999999999  9999999999999999998542211  11111112222


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..|.          ...|..+..      +|.-..      .-+-+|......+...+++      .|...|+-..|.|+
T Consensus       113 ~~Il----------GF~W~~s~e------~A~i~~------~G~e~y~v~pekrslRlVk------s~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  113 ANIL----------GFCWTSSTE------IAFITD------QGIEFYQVLPEKRSLRLVK------SHNLNVNWYMYCPE  164 (657)
T ss_pred             ceeE----------EEEEecCee------EEEEec------CCeEEEEEchhhhhhhhhh------hcccCccEEEEccc
Confidence            2233          677887754      555554      4577777765543333322      23335555555554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.92  E-value=1.2  Score=33.69  Aligned_cols=132  Identities=8%  Similarity=0.079  Sum_probs=71.5

Q ss_pred             EeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEeC
Q 026295           51 KTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        51 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      .+.+-...+..|+|.|+ .+.++++....+.|...+.+ +       +.++.+.-. ....-.|++.-  ++.++++--.
T Consensus        16 ~l~g~~~e~SGLTy~pd-~~tLfaV~d~~~~i~els~~-G-------~vlr~i~l~g~~D~EgI~y~g--~~~~vl~~Er   84 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPD-TGTLFAVQDEPGEIYELSLD-G-------KVLRRIPLDGFGDYEGITYLG--NGRYVLSEER   84 (248)
T ss_dssp             E-TT--S-EEEEEEETT-TTEEEEEETTTTEEEEEETT----------EEEEEE-SS-SSEEEEEE-S--TTEEEEEETT
T ss_pred             ECCCccCCccccEEcCC-CCeEEEEECCCCEEEEEcCC-C-------CEEEEEeCCCCCCceeEEEEC--CCEEEEEEcC
Confidence            34444556999999997 24566677777777766654 2       666666532 35677888865  7776666656


Q ss_pred             CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ++.+.++++..............+....   ..  +.-.....++|+|...     .|.++-..     .-..||.+..
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~l~~---~~--~~N~G~EGla~D~~~~-----~L~v~kE~-----~P~~l~~~~~  148 (248)
T PF06977_consen   85 DQRLYIFTIDDDTTSLDRADVQKISLGF---PN--KGNKGFEGLAYDPKTN-----RLFVAKER-----KPKRLYEVNG  148 (248)
T ss_dssp             TTEEEEEEE----TT--EEEEEEEE------S-----SS--EEEEEETTTT-----EEEEEEES-----SSEEEEEEES
T ss_pred             CCcEEEEEEeccccccchhhceEEeccc---cc--CCCcceEEEEEcCCCC-----EEEEEeCC-----CChhhEEEcc
Confidence            8999999885432111111112221110   00  0011123899999887     56666665     6677887765

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.83  E-value=1  Score=35.22  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             ceEEEEECCCCCEEEEEeCC-CcEEEEeCCCC-CC-CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-eEEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTD-GTLSIFDSPDP-SS-SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-SLLLWE   86 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~-~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-~v~iwd   86 (240)
                      .-+.++||||++.|..+... +.|.-|++... .. ........+....+..-.++...+  |.+.+++..+| .|..|+
T Consensus       164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDad--G~lw~~a~~~g~~v~~~~  241 (307)
T COG3386         164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDAD--GNLWVAAVWGGGRVVRFN  241 (307)
T ss_pred             ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCC--CCEEEecccCCceEEEEC
Confidence            34579999999877777654 67777776521 00 011111111122344445666555  77775555554 899998


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEe
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFG  116 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  116 (240)
                      .. +       +.+..+..+...+++++|-
T Consensus       242 pd-G-------~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         242 PD-G-------KLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             CC-C-------cEEEEEECCCCCCccceEe
Confidence            87 4       7888888777788888884

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.74  E-value=0.29  Score=39.19  Aligned_cols=50  Identities=8%  Similarity=0.181  Sum_probs=34.0

Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +.+.++|+.++        .+..+......+....|+|  +|..++... ++.|.+++..+
T Consensus        23 ~~y~i~d~~~~--------~~~~l~~~~~~~~~~~~sP--~g~~~~~v~-~~nly~~~~~~   72 (353)
T PF00930_consen   23 GDYYIYDIETG--------EITPLTPPPPKLQDAKWSP--DGKYIAFVR-DNNLYLRDLAT   72 (353)
T ss_dssp             EEEEEEETTTT--------EEEESS-EETTBSEEEE-S--SSTEEEEEE-TTEEEEESSTT
T ss_pred             eeEEEEecCCC--------ceEECcCCccccccceeec--CCCeeEEEe-cCceEEEECCC
Confidence            46788888764        2333333356788899999  999888876 46788887655

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=94.70  E-value=2.7  Score=36.75  Aligned_cols=166  Identities=10%  Similarity=0.041  Sum_probs=91.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCc-EEEEeEee------------e----cCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSS-FTCNLKTK------------V----HAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~------------~----h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +++|+++. .+.|.||+++...... .++...+.            .    -...|+.|....-.....|+.+..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            67777766 4799999987432100 00010110            0    11234555443221246788899999999


Q ss_pred             EEEeeecc---------CCC----cccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           84 LWEEIVED---------AQP----LQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        84 iwd~~~~~---------~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      +|....--         ...    ...++...+. ....+++++++.....+++|+++....|.||-..... .. ....
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~-~r-~~~~  204 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD-ER-FYHV  204 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc-cc-cccc
Confidence            99753210         000    0011222222 3467899999722377788888888889888765420 00 1110


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCc-eEEEEecCCCCCCCeEEEEEe
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGS-SFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~-~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      ... .+...|+          +|+|-++.....+. .++.++-.     |.+.+|++
T Consensus       205 ~s~-~~~hNIP----------~VSFl~~~~d~~G~v~v~a~dI~-----G~v~~~~I  245 (717)
T PF08728_consen  205 PSH-QHSHNIP----------NVSFLDDDLDPNGHVKVVATDIS-----GEVWTFKI  245 (717)
T ss_pred             ccc-ccccCCC----------eeEeecCCCCCccceEEEEEecc-----CcEEEEEE
Confidence            010 1223344          89998887543332 56666666     99999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=94.68  E-value=1.9  Score=34.95  Aligned_cols=157  Identities=11%  Similarity=0.104  Sum_probs=93.8

Q ss_pred             ceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEE
Q 026295           11 GTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWE   86 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd   86 (240)
                      .-..++++++++.+..+..   ++++.+.|..     +.+.+.....-..+ ..+.+.|+  |..+.... .++.|.+.|
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~-----t~~~~~~~~vG~~P-~~~a~~p~--g~~vyv~~~~~~~v~vi~  188 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAA-----TNKVTATIPVGNTP-TGVAVDPD--GNKVYVTNSDDNTVSVID  188 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCC-----CCeEEEEEecCCCc-ceEEECCC--CCeEEEEecCCCeEEEEe
Confidence            3457899999987777665   5778787776     44555554432334 78999999  88666554 678999999


Q ss_pred             eeeccCCCcccEEEEEe----eeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEee-eecccc
Q 026295           87 EIVEDAQPLQWKLCKSF----ESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAE-FQNAID  158 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~-~~~~~~  158 (240)
                      ....       ...+..    ......-..+.++|  ++.++.+....   +.+...|..+      ...... +.....
T Consensus       189 ~~~~-------~v~~~~~~~~~~~~~~P~~i~v~~--~g~~~yV~~~~~~~~~v~~id~~~------~~v~~~~~~~~~~  253 (381)
T COG3391         189 TSGN-------SVVRGSVGSLVGVGTGPAGIAVDP--DGNRVYVANDGSGSNNVLKIDTAT------GNVTATDLPVGSG  253 (381)
T ss_pred             CCCc-------ceeccccccccccCCCCceEEECC--CCCEEEEEeccCCCceEEEEeCCC------ceEEEeccccccC
Confidence            7553       222100    11123335688888  88865554433   5788888776      222221 111110


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      ..          ..+..+|.+.     .+.+.....    +.+.+-|..+.
T Consensus       254 ~~----------~~v~~~p~g~-----~~yv~~~~~----~~V~vid~~~~  285 (381)
T COG3391         254 AP----------RGVAVDPAGK-----AAYVANSQG----GTVSVIDGATD  285 (381)
T ss_pred             CC----------CceeECCCCC-----EEEEEecCC----CeEEEEeCCCC
Confidence            11          1577888887     455553322    67777776553

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.68  E-value=1.6  Score=34.06  Aligned_cols=111  Identities=12%  Similarity=0.177  Sum_probs=57.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .+.+..+.-+++|++++++..-....-|+.-..   .+++....  -...|..|.|.|+  +.+.+.+ ..|.|+.=+..
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~--~~~riq~~gf~~~--~~lw~~~-~Gg~~~~s~~~  215 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRN--SSRRIQSMGFSPD--GNLWMLA-RGGQIQFSDDP  215 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE----SSS-EEEEEE-TT--S-EEEEE-TTTEEEEEE-T
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccC--ccceehhceecCC--CCEEEEe-CCcEEEEccCC
Confidence            356788888999999988876555556765422   46554433  3578999999998  7766544 78888876621


Q ss_pred             eccCCCcccEEE-EEeeeccccEEeEEEeecCCCcEEEEEeCCCcE
Q 026295           89 VEDAQPLQWKLC-KSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV  133 (240)
Q Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  133 (240)
                      ..   ...|... ..+....-.+..++|.+  ++...++|+ .|.+
T Consensus       216 ~~---~~~w~~~~~~~~~~~~~~ld~a~~~--~~~~wa~gg-~G~l  255 (302)
T PF14870_consen  216 DD---GETWSEPIIPIKTNGYGILDLAYRP--PNEIWAVGG-SGTL  255 (302)
T ss_dssp             TE---EEEE---B-TTSS--S-EEEEEESS--SS-EEEEES-TT-E
T ss_pred             CC---ccccccccCCcccCceeeEEEEecC--CCCEEEEeC-CccE
Confidence            11   0222221 11112334478889987  777555544 5644

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.64  E-value=1.7  Score=34.10  Aligned_cols=131  Identities=10%  Similarity=-0.042  Sum_probs=69.1

Q ss_pred             ceEEEEECCCCCEEEEEeC-----C----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC
Q 026295           11 GTTSSSWNYCGQRLATGST-----D----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG   80 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~-----d----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~   80 (240)
                      ..+.+...|+|.+-++...     .    ..=.||.+...    ...+..+..+-..-+.|+|||+  ++.+..+.. .+
T Consensus       112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~----g~~~~l~~~~~~~~NGla~SpD--g~tly~aDT~~~  185 (307)
T COG3386         112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD----GGVVRLLDDDLTIPNGLAFSPD--GKTLYVADTPAN  185 (307)
T ss_pred             CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC----CCEEEeecCcEEecCceEECCC--CCEEEEEeCCCC
Confidence            4456777888876665444     0    11134444311    1223333333445578999999  877776654 46


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      .|.-|++.........-.....+.......-.++...  +|.+.+++..+| .|.+|+..       ++++..+..+
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa--dG~lw~~a~~~g~~v~~~~pd-------G~l~~~i~lP  253 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA--DGNLWVAAVWGGGRVVRFNPD-------GKLLGEIKLP  253 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC--CCCEEEecccCCceEEEECCC-------CcEEEEEECC
Confidence            7777776521110000011222222334555666755  777665544444 88888876       3555555544

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.62  E-value=0.45  Score=33.82  Aligned_cols=45  Identities=20%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             ccEEeEEEeecC---C-CcEEEEEeCCCcEEEEEecCcccccceeEEeee
Q 026295          108 TQVLDVQFGVSS---T-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF  153 (240)
Q Consensus       108 ~~v~~~~~~~~~---~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~  153 (240)
                      ..+..++|||..   + +-.|++.+.++.|.||...... ..+|..+..+
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-~~~W~~v~dv  134 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-QGEWNRVADV  134 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-cccEeeeeeh
Confidence            378999999931   1 2368889999999999876432 3445554443

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=1.8  Score=33.30  Aligned_cols=129  Identities=8%  Similarity=0.121  Sum_probs=76.4

Q ss_pred             eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEeCCC
Q 026295           53 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAYSDG  131 (240)
Q Consensus        53 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg  131 (240)
                      .+-+..+.++.|+|+  .+.|.+......-.++=...+       +.++++... -...-.|.+.-  +++++++--.++
T Consensus        82 ~g~~~nvS~LTynp~--~rtLFav~n~p~~iVElt~~G-------dlirtiPL~g~~DpE~Ieyig--~n~fvi~dER~~  150 (316)
T COG3204          82 LGETANVSSLTYNPD--TRTLFAVTNKPAAIVELTKEG-------DLIRTIPLTGFSDPETIEYIG--GNQFVIVDERDR  150 (316)
T ss_pred             ccccccccceeeCCC--cceEEEecCCCceEEEEecCC-------ceEEEecccccCChhHeEEec--CCEEEEEehhcc
Confidence            344556999999999  776666655555555544444       677776531 23345677765  788777777888


Q ss_pred             cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .+.++.+............ .+.     .....+.-|.-..++|+|...     .|..+-.-     +=+.||....
T Consensus       151 ~l~~~~vd~~t~~~~~~~~-~i~-----L~~~~k~N~GfEGlA~d~~~~-----~l~~aKEr-----~P~~I~~~~~  211 (316)
T COG3204         151 ALYLFTVDADTTVISAKVQ-KIP-----LGTTNKKNKGFEGLAWDPVDH-----RLFVAKER-----NPIGIFEVTQ  211 (316)
T ss_pred             eEEEEEEcCCccEEeccce-EEe-----ccccCCCCcCceeeecCCCCc-----eEEEEEcc-----CCcEEEEEec
Confidence            8888887653211111100 111     001111123334899999887     67777765     6677776653

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=94.33  E-value=0.15  Score=26.70  Aligned_cols=32  Identities=19%  Similarity=0.137  Sum_probs=24.5

Q ss_pred             cEEeEEEeecCC-CcEEEEEeCCCcEEEEEecC
Q 026295          109 QVLDVQFGVSST-SLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus       109 ~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~  140 (240)
                      .|+++.|+|... ..+|+.+-.-|.|.|+|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            588999997322 14677777789999999995

It contains a characteristic DLL sequence motif.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.30  E-value=1.8  Score=32.94  Aligned_cols=112  Identities=14%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             ceEEEEECCCCCEEEEEe---CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE-
Q 026295           11 GTTSSSWNYCGQRLATGS---TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE-   86 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~---~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd-   86 (240)
                      .+.+.+++++++.+|...   ....+.++.....    ....  +.  ...+..-.|.++  +...+....+...+++. 
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~----~~~~--~~--g~~l~~PS~d~~--g~~W~v~~~~~~~~~~~~   94 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP----VRPV--LT--GGSLTRPSWDPD--GWVWTVDDGSGGVRVVRD   94 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc----ceee--cc--CCccccccccCC--CCEEEEEcCCCceEEEEe
Confidence            578899999999877765   2234555544321    1111  12  236777889888  88777766566666664 


Q ss_pred             eeeccCCCcccEEEE-EeeeccccEEeEEEeecCCCcEEEEEe---CCCcEEEEEec
Q 026295           87 EIVEDAQPLQWKLCK-SFESTSTQVLDVQFGVSSTSLKLVAAY---SDGHVKVYELL  139 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~  139 (240)
                      ...+..     .... ........|..+.++|  +|..++...   .++.|.+--+.
T Consensus        95 ~~~g~~-----~~~~v~~~~~~~~I~~l~vSp--DG~RvA~v~~~~~~~~v~va~V~  144 (253)
T PF10647_consen   95 SASGTG-----EPVEVDWPGLRGRITALRVSP--DGTRVAVVVEDGGGGRVYVAGVV  144 (253)
T ss_pred             cCCCcc-----eeEEecccccCCceEEEEECC--CCcEEEEEEecCCCCeEEEEEEE
Confidence            222211     1111 1111112899999999  999877666   34677776554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.30  E-value=2.7  Score=35.09  Aligned_cols=112  Identities=8%  Similarity=0.029  Sum_probs=69.4

Q ss_pred             eEEEEECCCCC-------EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC----ccEEEEEEcCCCCCCEEEEEecCC
Q 026295           12 TTSSSWNYCGQ-------RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA----GAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus        12 v~~~~~s~~~~-------~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |+-+.+.|+.+       .-+.|-.|..|.-||.+..+  . ..+...++|.    ....|.+=..   .-+++.|+.+|
T Consensus       378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~--~-~kl~~~q~kqy~~k~nFsc~aTT~---sG~IvvgS~~G  451 (644)
T KOG2395|consen  378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG--K-NKLAVVQSKQYSTKNNFSCFATTE---SGYIVVGSLKG  451 (644)
T ss_pred             cceeeccCCcchhcccccccEEeecCCceEEecccccC--c-ceeeeeeccccccccccceeeecC---CceEEEeecCC
Confidence            55566666543       12345567788888876432  1 1122222221    1222333222   35688999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      .|++||-...       ..-..+++...+|..|..+.  +|.++++.+ +..+.+.++.
T Consensus       452 dIRLYdri~~-------~AKTAlPgLG~~I~hVdvta--dGKwil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  452 DIRLYDRIGR-------RAKTALPGLGDAIKHVDVTA--DGKWILATC-KTYLLLIDTL  500 (644)
T ss_pred             cEEeehhhhh-------hhhhcccccCCceeeEEeec--cCcEEEEec-ccEEEEEEEe
Confidence            9999997543       44556777888999999977  999776555 5677777764

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.17  E-value=1.9  Score=32.68  Aligned_cols=102  Identities=18%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      ..+++.|+-.+.+.--|..     ++..+-... -..++-+-+.. -  |++++.|+..|.+.+.+..++       ...
T Consensus        23 kT~v~igSHs~~~~avd~~-----sG~~~We~i-lg~RiE~sa~v-v--gdfVV~GCy~g~lYfl~~~tG-------s~~   86 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQ-----SGNLIWEAI-LGVRIECSAIV-V--GDFVVLGCYSGGLYFLCVKTG-------SQI   86 (354)
T ss_pred             ceEEEEecCCceEEEecCC-----CCcEEeehh-hCceeeeeeEE-E--CCEEEEEEccCcEEEEEecch-------hhe
Confidence            3567777777777777766     222222111 11222222211 2  888999999999999998776       444


Q ss_pred             EEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295          101 KSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus       101 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..+.....--......+  ++..+..++.|++....|.++
T Consensus        87 w~f~~~~~vk~~a~~d~--~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   87 WNFVILETVKVRAQCDF--DGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eeeeehhhhccceEEcC--CCceEEEecCCCcEEEecccc
Confidence            44443211112233445  888899999999999999887

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=93.98  E-value=0.11  Score=37.98  Aligned_cols=64  Identities=13%  Similarity=0.071  Sum_probs=37.9

Q ss_pred             CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +.-++.|+.+|.|.+|......      .....+......|.++ +...+++.+..+++.||.|+.|+..-
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g------~~~d~~~s~~e~i~~~-Ip~~~~~~~~c~~~~dg~ir~~n~~p  133 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEG------AHSDRVCSGEESIDLG-IPNGRDSSLGCVGAQDGRIRACNIKP  133 (238)
T ss_pred             CceEEeecccceEEEecCCccc------hHHHhhhcccccceec-cccccccceeEEeccCCceeeecccc
Confidence            5668899999999999875211      1111111111222222 11123566788999999999998864

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=93.73  E-value=1.4  Score=29.67  Aligned_cols=94  Identities=16%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             EEeecCCCcEEEEEeCCCcEEEEEecCccccc--ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILK--NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      .|..  ....|++++.-|+|.|.+........  ....+..+.. ...++       ...+-.|.|...   ...|++|+
T Consensus         5 kfDG--~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~it-------alaaG~l~~~~~---~D~LliGt   71 (136)
T PF14781_consen    5 KFDG--VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEIT-------ALAAGRLKPDDG---RDCLLIGT   71 (136)
T ss_pred             EeCC--CceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceE-------EEEEEecCCCCC---cCEEEEec
Confidence            4543  44568888889999999876432211  1111222211 12222       001233655332   55888888


Q ss_pred             cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          192 NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       192 ~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .      ..+..||+......+..  +      -.+.|+++.+
T Consensus        72 ~------t~llaYDV~~N~d~Fyk--e------~~DGvn~i~~  100 (136)
T PF14781_consen   72 Q------TSLLAYDVENNSDLFYK--E------VPDGVNAIVI  100 (136)
T ss_pred             c------ceEEEEEcccCchhhhh--h------CccceeEEEE
Confidence            7      78999999887655433  1      1225777666

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.64  E-value=3.1  Score=35.03  Aligned_cols=61  Identities=11%  Similarity=0.064  Sum_probs=36.9

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc------cEE--EEEEcCCCCC-CEEEEEecCCeEEEEEeeec
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG------AIL--KVVWVPPEFG-DAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~------~v~--~~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~   90 (240)
                      +.++..++.++.|.-.|..     +++.+-.+.....      .+.  .+..  .  + ..++.++.++.|..+|.+++
T Consensus        61 ~g~vy~~~~~g~l~AlD~~-----tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~--~~~~V~v~~~~g~v~AlD~~TG  130 (488)
T cd00216          61 DGDMYFTTSHSALFALDAA-----TGKVLWRYDPKLPADRGCCDVVNRGVAY--W--DPRKVFFGTFDGRLVALDAETG  130 (488)
T ss_pred             CCEEEEeCCCCcEEEEECC-----CChhhceeCCCCCccccccccccCCcEE--c--cCCeEEEecCCCeEEEEECCCC
Confidence            4466777778888888886     4444444332111      000  0111  1  3 66777888999999998776

The alignment model contains an 8-bladed beta-propeller.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=93.52  E-value=2  Score=34.12  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=33.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcE-EEEeEe----eecCccEEEEEEcCC
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSF-TCNLKT----KVHAGAILKVVWVPP   67 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~----~~h~~~v~~~~~~~~   67 (240)
                      -+.|+|.|+|++|++ ...|.|++++...    .. ..+..+    .........+++.|+
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~~~g----~~~~~v~~~~~v~~~~~~gllgia~~p~   59 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVDKDG----SLKTPVADLPEVFADGERGLLGIAFHPD   59 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEETTT----EECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEeCCC----cCcceecccccccccccCCcccceeccc
Confidence            478999999977765 5689999999432    22 222222    123456889999884

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=93.46  E-value=3.7  Score=33.73  Aligned_cols=30  Identities=20%  Similarity=0.349  Sum_probs=23.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPD   40 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~   40 (240)
                      +.|.++.|+.+.. |++-..||.+++||+.+
T Consensus        81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             CCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence            5788899988654 55566889999999864

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PHA03098 kelch-like protein; Provisional

Probab=93.37  E-value=4  Score=34.73  Aligned_cols=105  Identities=10%  Similarity=0.026  Sum_probs=54.0

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEee
Q 026295           20 CGQRLATGSTDG------TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEI   88 (240)
Q Consensus        20 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~   88 (240)
                      ++..++.|+.++      .+..||....   +|..+..+.........+.+  +  +.+++.|+.++     .+..||..
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~---~W~~~~~~~~~R~~~~~~~~--~--~~lyv~GG~~~~~~~~~v~~yd~~  366 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTK---SWNKVPELIYPRKNPGVTVF--N--NRIYVIGGIYNSISLNTVESWKPG  366 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCC---eeeECCCCCcccccceEEEE--C--CEEEEEeCCCCCEecceEEEEcCC
Confidence            455666666542      4566776643   55444433311111222222  3  66677777652     45666665


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC------CcEEEEEecC
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD------GHVKVYELLD  140 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~  140 (240)
                      .     ..|.....+.........+.+    ++.+++.|+.+      ..+..||+.+
T Consensus       367 ~-----~~W~~~~~lp~~r~~~~~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t  415 (534)
T PHA03098        367 E-----SKWREEPPLIFPRYNPCVVNV----NNLIYVIGGISKNDELLKTVECFSLNT  415 (534)
T ss_pred             C-----CceeeCCCcCcCCccceEEEE----CCEEEEECCcCCCCcccceEEEEeCCC
Confidence            4     456665555433322222222    56767777632      3577888765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.21  E-value=3.8  Score=33.09  Aligned_cols=109  Identities=8%  Similarity=0.120  Sum_probs=55.6

Q ss_pred             ceEEEEECCCCCEEEEEe-----------CCC-cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295           11 GTTSSSWNYCGQRLATGS-----------TDG-TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~-----------~d~-~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ....|+|+++|+++++-.           ..+ .|.+++-.... +.......+.........+++.++  + ++++ ..
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd-G~~d~~~vfa~~l~~p~Gi~~~~~--G-lyV~-~~   89 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD-GKYDKSNVFAEELSMVTGLAVAVG--G-VYVA-TP   89 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC-CCcceeEEeecCCCCccceeEecC--C-EEEe-CC
Confidence            456799999999877753           223 66666543210 011222333332344678888787  7 4444 33


Q ss_pred             CCeEEEE-EeeeccCCCc-ccEEE-EEeee----ccccEEeEEEeecCCCcEEEEEe
Q 026295           79 DGSLLLW-EEIVEDAQPL-QWKLC-KSFES----TSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        79 d~~v~iw-d~~~~~~~~~-~~~~~-~~~~~----~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      . .|..+ |.. ++.... ..+.+ ..+..    +......+.|.|  +|.+.++.+
T Consensus        90 ~-~i~~~~d~~-gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp--DG~LYv~~G  142 (367)
T TIGR02604        90 P-DILFLRDKD-GDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP--DGWLYFNHG  142 (367)
T ss_pred             C-eEEEEeCCC-CCCCCCCccEEEEEccCCCCCcccccccCceECC--CCCEEEecc
Confidence            3 34333 332 211111 11222 22322    134577899988  887655544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.21  E-value=3.4  Score=33.86  Aligned_cols=103  Identities=14%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CCcEEEEeCCCCCCCcEEEEeEeee-cC-ccEEEEEEcCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeec
Q 026295           30 DGTLSIFDSPDPSSSSFTCNLKTKV-HA-GAILKVVWVPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFEST  106 (240)
Q Consensus        30 d~~i~iw~~~~~~~~~~~~~~~~~~-h~-~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~  106 (240)
                      -.++.+||+.     +.+.++++.- .+ .....|.|.++.... -|+.+....+|..|--...    ..|.....+.-.
T Consensus       221 G~~l~vWD~~-----~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~----g~W~a~kVi~ip  291 (461)
T PF05694_consen  221 GHSLHVWDWS-----TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD----GEWAAEKVIDIP  291 (461)
T ss_dssp             --EEEEEETT-----TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET----TEEEEEEEEEE-
T ss_pred             cCeEEEEECC-----CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC----CCeeeeEEEECC
Confidence            4579999999     5577777762 22 346788887662233 3444444445554443222    335544333211


Q ss_pred             -------------------cccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCccc
Q 026295          107 -------------------STQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLI  143 (240)
Q Consensus       107 -------------------~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~  143 (240)
                                         ..-|+.|.+|.  +.++|...+ ..|.|+.||+..+.+
T Consensus       292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP~~  346 (461)
T PF05694_consen  292 AKKVEGWILPEMLKPFGAVPPLITDILISL--DDRFLYVSNWLHGDVRQYDISDPFN  346 (461)
T ss_dssp             -EE--SS---GGGGGG-EE------EEE-T--TS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred             CcccCcccccccccccccCCCceEeEEEcc--CCCEEEEEcccCCcEEEEecCCCCC
Confidence                               23468888988  888776555 789999999988644

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.19  E-value=2.4  Score=34.71  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=51.5

Q ss_pred             EeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccE-EeEEE-eec----------
Q 026295           51 KTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQV-LDVQF-GVS----------  118 (240)
Q Consensus        51 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~-~~~----------  118 (240)
                      .+......+.+++.+|.  +.+.++...-|.|.++|+..+       ..++.+++.+..= .-+.. .+.          
T Consensus       302 ~l~D~~R~~~~i~~sP~--~~laA~tDslGRV~LiD~~~~-------~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~  372 (415)
T PF14655_consen  302 GLPDSKREGESICLSPS--GRLAAVTDSLGRVLLIDVARG-------IVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSP  372 (415)
T ss_pred             eeccCCceEEEEEECCC--CCEEEEEcCCCcEEEEECCCC-------hhhhhhccCccceEEEEEeeccccccccccccc
Confidence            34444566889999999  998888877889999999876       5666666533221 00000 000          


Q ss_pred             ----CCCcE-EEEEeCCCcEEEEEecC
Q 026295          119 ----STSLK-LVAAYSDGHVKVYELLD  140 (240)
Q Consensus       119 ----~~~~~-l~~~~~dg~v~iw~~~~  140 (240)
                          +...+ ++-+-.-|.|.||.++.
T Consensus       373 ~~~~~~~l~LvIyaprRg~lEvW~~~~  399 (415)
T PF14655_consen  373 KSSSRFALFLVIYAPRRGILEVWSMRQ  399 (415)
T ss_pred             CCCCcceEEEEEEeccCCeEEEEecCC
Confidence                01122 34456778999999987

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=93.06  E-value=0.82  Score=37.36  Aligned_cols=166  Identities=9%  Similarity=0.095  Sum_probs=92.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee-cCccEE-EEEEcCCCCCCEEEEEecCCeEEEE-E
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAIL-KVVWVPPEFGDAVACICSDGSLLLW-E   86 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iw-d   86 (240)
                      ..|..+-..|+|+.|..-+. ..+.|+++.+......+.+..-.+ ....|. .+..-..  |.-+..++.||.|.-| |
T Consensus       221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~G--g~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSG--GFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             cchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhC--ceeEEEEcCCCceeeeee
Confidence            45666778999998777665 678899987542111111111011 001121 1121223  5567788889988766 5


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      .+..+  ++.+..++.++-....+..+.  |..+-+-+++-+.+|++.++.....     ..+..  +..-....     
T Consensus       298 vr~~~--~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~-----~~lL~--~~~~~~~~-----  361 (733)
T COG4590         298 VRRDG--QPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSE-----KLLLF--ERAYQAPQ-----  361 (733)
T ss_pred             eecCC--CCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccC-----cceeh--hhhhcCcc-----
Confidence            54332  245555555554444444432  3224455777788888887765431     11111  11111112     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                           .+.++|...     +|++-..      |+|+++.+++..
T Consensus       362 -----~~~~Sp~~~-----~Ll~e~~------gki~~~~l~Nr~  389 (733)
T COG4590         362 -----LVAMSPNQA-----YLLSEDQ------GKIRLAQLENRN  389 (733)
T ss_pred             -----eeeeCcccc-----hheeecC------CceEEEEecCCC
Confidence                 678999987     6766554      899999998764

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.63  E-value=3.3  Score=30.92  Aligned_cols=95  Identities=12%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             EEEEECCCCCEEE-EEeCCCcEEEEeCCCC--CCCcEEEEeEeeec---Cc-cEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295           13 TSSSWNYCGQRLA-TGSTDGTLSIFDSPDP--SSSSFTCNLKTKVH---AG-AILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus        13 ~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~--~~~~~~~~~~~~~h---~~-~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      +.++|+.+.+.+. +-+.+-.|.-||.+-+  .....+.+..++..   +. .--.++....  |.+.++.-.-++|...
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~e--G~L~Va~~ng~~V~~~  238 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTE--GNLYVATFNGGTVQKV  238 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccC--CcEEEEEecCcEEEEE
Confidence            3578887776444 4455566766884422  11122233333320   11 1112333344  7877777777899999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEe
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFG  116 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  116 (240)
                      |..++       +.+.+++-....|++++|-
T Consensus       239 dp~tG-------K~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  239 DPTTG-------KILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCC-------cEEEEEEcCCCceEEEEec
Confidence            99888       9999999999999999995

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.54  E-value=5.6  Score=33.38  Aligned_cols=97  Identities=14%  Similarity=0.050  Sum_probs=53.7

Q ss_pred             ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc-----ccceeE-EeeeecccceeeccccccceeeeEEEeCCCCC
Q 026295          108 TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI-----LKNWQL-QAEFQNAIDSVTMFRKASCISASISWNPQKGE  181 (240)
Q Consensus       108 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~-----~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~  181 (240)
                      -.|..+..++  .|..++..+.+|.+.++=.+.-+.     .++... ..++.....-... . ..-...-++|+|+...
T Consensus       104 feV~~vl~s~--~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s-~~ltl~Qa~WHP~S~~  179 (741)
T KOG4460|consen  104 FEVYQVLLSP--TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-S-TSLTLKQAAWHPSSIL  179 (741)
T ss_pred             EEEEEEEecC--CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-C-CceeeeeccccCCccC
Confidence            4567788888  898899999999776654322110     010001 1111111000000 0 0112346779998832


Q ss_pred             CCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                        +..|..-.+|     +.||||++......|..
T Consensus       180 --D~hL~iL~sd-----nviRiy~lS~~telylq  206 (741)
T KOG4460|consen  180 --DPHLVLLTSD-----NVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             --CceEEEEecC-----cEEEEEecCCcchhhcc
Confidence              2367777777     99999999876655543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=92.50  E-value=3.7  Score=31.20  Aligned_cols=148  Identities=12%  Similarity=0.087  Sum_probs=78.0

Q ss_pred             cEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295           58 AILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY  136 (240)
Q Consensus        58 ~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  136 (240)
                      .+.+.+++++  +..++... .++.-.+|-...+.      .......  ...+..-.|++  ++...+....+...+++
T Consensus        25 ~~~s~AvS~d--g~~~A~v~~~~~~~~L~~~~~~~------~~~~~~~--g~~l~~PS~d~--~g~~W~v~~~~~~~~~~   92 (253)
T PF10647_consen   25 DVTSPAVSPD--GSRVAAVSEGDGGRSLYVGPAGG------PVRPVLT--GGSLTRPSWDP--DGWVWTVDDGSGGVRVV   92 (253)
T ss_pred             cccceEECCC--CCeEEEEEEcCCCCEEEEEcCCC------cceeecc--CCccccccccC--CCCEEEEEcCCCceEEE
Confidence            6788999999  88776655 23333444433331      1111112  23677788988  77766666656666666


Q ss_pred             Ee-cCcccccceeEEeeeecc--cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC-
Q 026295          137 EL-LDPLILKNWQLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR-  212 (240)
Q Consensus       137 ~~-~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~-  212 (240)
                      .. ...    ..... .+...  ...|.          ++.++|++.     .+|.-..+...  +.|.|--+...... 
T Consensus        93 ~~~~~g----~~~~~-~v~~~~~~~~I~----------~l~vSpDG~-----RvA~v~~~~~~--~~v~va~V~r~~~g~  150 (253)
T PF10647_consen   93 RDSASG----TGEPV-EVDWPGLRGRIT----------ALRVSPDGT-----RVAVVVEDGGG--GRVYVAGVVRDGDGV  150 (253)
T ss_pred             EecCCC----cceeE-EecccccCCceE----------EEEECCCCc-----EEEEEEecCCC--CeEEEEEEEeCCCCC
Confidence            42 221    01111 11111  11344          899999998     45544421100  67777766433222 


Q ss_pred             -cceeEeeecCCCCCCceEEEEEecCCC
Q 026295          213 -WLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       213 -~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       ..+...+.........+++++|.++..
T Consensus       151 ~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  151 PRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeccceEecccccCcceeeeecCCCE
Confidence             223222222222345899999999863

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.48  E-value=5.3  Score=32.93  Aligned_cols=114  Identities=11%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295           14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ   93 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   93 (240)
                      .+=|+...+.|++.. .|-+.=|...+++..  .++.--...+++|.+++|+++  .+.++.--.+.+|.+++...... 
T Consensus        27 gvFfDDaNkqlfavr-SggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlD--nkilAVQR~~~~v~f~nf~~d~~-  100 (657)
T KOG2377|consen   27 GVFFDDANKQLFAVR-SGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLD--NKILAVQRTSKTVDFCNFIPDNS-  100 (657)
T ss_pred             ceeeccCcceEEEEe-cCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccC--cceEEEEecCceEEEEecCCCch-
Confidence            344554444444433 355666766654321  112111234679999999999  89999999999999998853311 


Q ss_pred             CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           94 PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                        ......+.+.....|....|+.  + .-+|..+..| +-+|...
T Consensus       101 --~l~~~~~ck~k~~~IlGF~W~~--s-~e~A~i~~~G-~e~y~v~  140 (657)
T KOG2377|consen  101 --QLEYTQECKTKNANILGFCWTS--S-TEIAFITDQG-IEFYQVL  140 (657)
T ss_pred             --hhHHHHHhccCcceeEEEEEec--C-eeEEEEecCC-eEEEEEc
Confidence              0112223334456688999976  4 3366666555 6777664

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.23  E-value=3.5  Score=30.28  Aligned_cols=109  Identities=12%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---C---eEEEEE---eeeccC
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---G---SLLLWE---EIVEDA   92 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~---~v~iwd---~~~~~~   92 (240)
                      +.|..+.....|.+|++..+   ..+.+..|.. -+.|..+.++..  |+++++-=.+   .   .+|+|-   ....+.
T Consensus        29 d~Lfva~~g~~Vev~~l~~~---~~~~~~~F~T-v~~V~~l~y~~~--GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~  102 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQE---ECPLLCTFST-VGRVLQLVYSEA--GDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN  102 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccC---CCceeEEEcc-hhheeEEEeccc--cceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence            34434345578999999843   4466777775 478999999998  9999985221   2   566653   110000


Q ss_pred             C----------------Cccc--EEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           93 Q----------------PLQW--KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        93 ~----------------~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      .                ...-  ..+-+++ ....+.+++.+|. .|+ |+.|+. +++.+|.+..
T Consensus       103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~-tG~-LlVg~~-~~l~lf~l~~  164 (215)
T PF14761_consen  103 SPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPV-TGN-LLVGCG-NKLVLFTLKY  164 (215)
T ss_pred             CcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCC-CCC-EEEEcC-CEEEEEEEEE
Confidence            0                0000  0111111 2346678888874 566 555554 5789998874

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.81  E-value=5.2  Score=31.34  Aligned_cols=152  Identities=11%  Similarity=0.213  Sum_probs=71.2

Q ss_pred             cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE
Q 026295           45 SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        45 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  124 (240)
                      +|+.+.  ..-.+.+..+.-+++  |.+++++..-....-||.-.     ..|.+....  ....|..|.|.|  ++.+.
T Consensus       135 tW~~~~--~~~~gs~~~~~r~~d--G~~vavs~~G~~~~s~~~G~-----~~w~~~~r~--~~~riq~~gf~~--~~~lw  201 (302)
T PF14870_consen  135 TWQAVV--SETSGSINDITRSSD--GRYVAVSSRGNFYSSWDPGQ-----TTWQPHNRN--SSRRIQSMGFSP--DGNLW  201 (302)
T ss_dssp             SEEEEE---S----EEEEEE-TT--S-EEEEETTSSEEEEE-TT------SS-EEEE----SSS-EEEEEE-T--TS-EE
T ss_pred             CeeEcc--cCCcceeEeEEECCC--CcEEEEECcccEEEEecCCC-----ccceEEccC--ccceehhceecC--CCCEE
Confidence            666543  233567888888888  99888876544555666422     345554433  347899999998  87754


Q ss_pred             EEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          125 VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       125 ~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                      + ....|.|++=+....  ...|..      +..++   ....-.+..++|.++..     +.|+|+.      |  .+|
T Consensus       202 ~-~~~Gg~~~~s~~~~~--~~~w~~------~~~~~---~~~~~~~ld~a~~~~~~-----~wa~gg~------G--~l~  256 (302)
T PF14870_consen  202 M-LARGGQIQFSDDPDD--GETWSE------PIIPI---KTNGYGILDLAYRPPNE-----IWAVGGS------G--TLL  256 (302)
T ss_dssp             E-EETTTEEEEEE-TTE--EEEE---------B-TT---SS--S-EEEEEESSSS------EEEEEST------T---EE
T ss_pred             E-EeCCcEEEEccCCCC--cccccc------ccCCc---ccCceeeEEEEecCCCC-----EEEEeCC------c--cEE
Confidence            4 447888887662221  111221      11111   01111233889998876     7777765      4  333


Q ss_pred             EeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ....+-+.|+......   .-...++.|.|.++
T Consensus       257 ~S~DgGktW~~~~~~~---~~~~n~~~i~f~~~  286 (302)
T PF14870_consen  257 VSTDGGKTWQKDRVGE---NVPSNLYRIVFVNP  286 (302)
T ss_dssp             EESSTTSS-EE-GGGT---TSSS---EEEEEET
T ss_pred             EeCCCCccceECcccc---CCCCceEEEEEcCC
Confidence            3444445565543222   12236788888654

>PHA02790 Kelch-like protein; Provisional

Probab=91.65  E-value=3.5  Score=34.68  Aligned_cols=103  Identities=10%  Similarity=-0.027  Sum_probs=58.4

Q ss_pred             CCCCEEEEEeCCC---cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCc
Q 026295           19 YCGQRLATGSTDG---TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPL   95 (240)
Q Consensus        19 ~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   95 (240)
                      -+|+..+.|+.++   .+..||....   .|..+..+.........+.+  +  +.+.+.|   |.+.+||...     .
T Consensus       361 ~~g~IYviGG~~~~~~~ve~ydp~~~---~W~~~~~m~~~r~~~~~~~~--~--~~IYv~G---G~~e~ydp~~-----~  425 (480)
T PHA02790        361 INNVIYVIGGHSETDTTTEYLLPNHD---QWQFGPSTYYPHYKSCALVF--G--RRLFLVG---RNAEFYCESS-----N  425 (480)
T ss_pred             ECCEEEEecCcCCCCccEEEEeCCCC---EEEeCCCCCCccccceEEEE--C--CEEEEEC---CceEEecCCC-----C
Confidence            3566777777553   4667887643   66655444322222222222  3  5555555   3567788754     5


Q ss_pred             ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecC
Q 026295           96 QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLD  140 (240)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~  140 (240)
                      .|..+..+.........+.+    ++.+.+.|+.+     ..|..||..+
T Consensus       426 ~W~~~~~m~~~r~~~~~~v~----~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        426 TWTLIDDPIYPRDNPELIIV----DNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cEeEcCCCCCCccccEEEEE----CCEEEEECCcCCCcccceEEEEECCC
Confidence            78877766544444444443    67778888754     3466777664

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.37  E-value=6.1  Score=31.33  Aligned_cols=155  Identities=11%  Similarity=0.098  Sum_probs=77.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE-EEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL-KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +.|.+-+.||.+.-..+...+....+....|..-..++. .-.+...  +..++-.+..|.|+--|+.....     +..
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~--~~~~~F~Sy~G~v~~~dlsg~~~-----~~~  220 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD--GGRLYFVSYEGNVYSADLSGDSA-----KFG  220 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT--TTEEEEEBTTSEEEEEEETTSSE-----EEE
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC--CCeEEEEecCCEEEEEeccCCcc-----ccc
Confidence            457777889999888887654322221122222222222 2234344  55555567889888888765422     222


Q ss_pred             EEeeec----------cccEEeEEEeecCCCcEEEEEe--CC-----C--cEEEEEecCcccccceeEEeeeecccceee
Q 026295          101 KSFEST----------STQVLDVQFGVSSTSLKLVAAY--SD-----G--HVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus       101 ~~~~~~----------~~~v~~~~~~~~~~~~~l~~~~--~d-----g--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      ..+...          .+.-.-+++++. .+++++.-.  .+     +  .|-++|+.+      .+.+.++.... .+.
T Consensus       221 ~~~~~~t~~e~~~~WrPGG~Q~~A~~~~-~~rlyvLMh~g~~gsHKdpgteVWv~D~~t------~krv~Ri~l~~-~~~  292 (342)
T PF06433_consen  221 KPWSLLTDAEKADGWRPGGWQLIAYHAA-SGRLYVLMHQGGEGSHKDPGTEVWVYDLKT------HKRVARIPLEH-PID  292 (342)
T ss_dssp             EEEESS-HHHHHTTEEE-SSS-EEEETT-TTEEEEEEEE--TT-TTS-EEEEEEEETTT------TEEEEEEEEEE-EES
T ss_pred             CcccccCccccccCcCCcceeeeeeccc-cCeEEEEecCCCCCCccCCceEEEEEECCC------CeEEEEEeCCC-ccc
Confidence            222211          122334666652 222222211  11     1  256666665      55555554321 222


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~  210 (240)
                                ++..+.+..    ++|.+. ..+     +.+.+||..+++
T Consensus       293 ----------Si~Vsqd~~----P~L~~~~~~~-----~~l~v~D~~tGk  323 (342)
T PF06433_consen  293 ----------SIAVSQDDK----PLLYALSAGD-----GTLDVYDAATGK  323 (342)
T ss_dssp             ----------EEEEESSSS-----EEEEEETTT-----TEEEEEETTT--
T ss_pred             ----------eEEEccCCC----cEEEEEcCCC-----CeEEEEeCcCCc
Confidence                      677777664    255544 445     899999998875

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.25  E-value=0.16  Score=44.69  Aligned_cols=135  Identities=11%  Similarity=0.105  Sum_probs=72.0

Q ss_pred             eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-CCcEEEEEeCCC
Q 026295           53 KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-TSLKLVAAYSDG  131 (240)
Q Consensus        53 ~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg  131 (240)
                      ++-.+.|..+.|.+.+..+ +.  -.-|.+.+|++....++-..-..+.........+.-|.|+|.. +.-++..+-.++
T Consensus       129 kgf~G~v~dl~fah~~~pk-~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~  205 (1283)
T KOG1916|consen  129 KGFPGGVGDLQFAHTKCPK-GR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG  205 (1283)
T ss_pred             hcCCCCcccccccccCChH-HH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence            4556778888885542222 22  3346788999865433211111222223333455677777632 334566666778


Q ss_pred             cEEEEEecCcccccceeEEeeeecccceeeccccccceeee-EEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISAS-ISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      .|++.+.....       ..-+..|...+.......-.+-- -..+|+|.     .|+.+.+|     |.++.|...
T Consensus       206 ~i~lL~~~ra~-------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-----v~a~a~~d-----G~v~f~Qiy  265 (1283)
T KOG1916|consen  206 EIRLLNINRAL-------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-----VFAWAISD-----GSVGFYQIY  265 (1283)
T ss_pred             ceeEeeechHH-------HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-----EEEEeecC-----Cccceeeee
Confidence            88887765421       11222333322211000000001 12789988     89999999     999999864

>PLN02153 epithiospecifier protein

Probab=91.22  E-value=6.5  Score=31.31  Aligned_cols=30  Identities=17%  Similarity=0.175  Sum_probs=17.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEe
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKT   52 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~   52 (240)
                      ++++++.|+.+     ..+.+||....   +|..+..+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~---~W~~~~~~  119 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKN---EWTFLTKL  119 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCC---EEEEeccC
Confidence            45566666653     24677887643   56655443

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.37  E-value=6.6  Score=33.00  Aligned_cols=83  Identities=24%  Similarity=0.280  Sum_probs=47.7

Q ss_pred             cEEEEEEcCCCCCCEEEEEecCCeEEEEEee--eccCCCcccEEE---EEee--------eccccEEeEEEeecC-CCcE
Q 026295           58 AILKVVWVPPEFGDAVACICSDGSLLLWEEI--VEDAQPLQWKLC---KSFE--------STSTQVLDVQFGVSS-TSLK  123 (240)
Q Consensus        58 ~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~---~~~~--------~~~~~v~~~~~~~~~-~~~~  123 (240)
                      .|..+..++.  |..++-.+.+|.+.++=.+  ..++.....++.   +++.        ...-.+..++|+|+. ....
T Consensus       105 eV~~vl~s~~--GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPT--GSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCC--CceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            3567777888  9988888888865443211  000000000111   1111        122346678999953 1245


Q ss_pred             EEEEeCCCcEEEEEecCcc
Q 026295          124 LVAAYSDGHVKVYELLDPL  142 (240)
Q Consensus       124 l~~~~~dg~v~iw~~~~~~  142 (240)
                      |..-+.|+.+++||+..+.
T Consensus       183 L~iL~sdnviRiy~lS~~t  201 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPT  201 (741)
T ss_pred             EEEEecCcEEEEEecCCcc
Confidence            7777889999999997653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.12  E-value=1.9  Score=32.03  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.9

Q ss_pred             CCcEEEEEeCCCcEEEEEecCc
Q 026295          120 TSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      ++.+|++.+.+|.+++||+.+.
T Consensus        21 ~~~~Ll~iT~~G~l~vWnl~~~   42 (219)
T PF07569_consen   21 NGSYLLAITSSGLLYVWNLKKG   42 (219)
T ss_pred             CCCEEEEEeCCCeEEEEECCCC
Confidence            7888999999999999999873

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=89.19  E-value=13  Score=31.49  Aligned_cols=26  Identities=8%  Similarity=-0.185  Sum_probs=20.8

Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCccee
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPV  216 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~  216 (240)
                      ++++++.+     |.+...|..+++..|...
T Consensus       303 ~V~~g~~~-----G~l~ald~~tG~~~W~~~  328 (488)
T cd00216         303 AIVHAPKN-----GFFYVLDRTTGKLISARP  328 (488)
T ss_pred             EEEEECCC-----ceEEEEECCCCcEeeEeE
Confidence            56677777     999999999998888653

The alignment model contains an 8-bladed beta-propeller.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=89.03  E-value=7.4  Score=28.65  Aligned_cols=119  Identities=15%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             CEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---C---cEEEE-EecCccc
Q 026295           71 DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---G---HVKVY-ELLDPLI  143 (240)
Q Consensus        71 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g---~v~iw-~~~~~~~  143 (240)
                      +.|..+...+.|.+|++.....     .++..|..- +.|..+.++.  .|.++++-=.+   .   .+|+| |.+....
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~-----~~~~~F~Tv-~~V~~l~y~~--~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~  100 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEEC-----PLLCTFSTV-GRVLQLVYSE--AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKE  100 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCC-----ceeEEEcch-hheeEEEecc--ccceEEEEEeecCCccceEEEEEEEhhhhcc
Confidence            4443435567899999984322     566777654 7888999988  89999885422   2   56665 2221100


Q ss_pred             ccceeEEeeeecccceee---cccc--------ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          144 LKNWQLQAEFQNAIDSVT---MFRK--------ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       144 ~~~~~~~~~~~~~~~~v~---~~~~--------~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      .. ......+.+|...-+   +...        ..-.+.+++-+|..+     -|++|+.      +++.||.+...
T Consensus       101 ~~-~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-----~LlVg~~------~~l~lf~l~~~  165 (215)
T PF14761_consen  101 EN-SPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-----NLLVGCG------NKLVLFTLKYQ  165 (215)
T ss_pred             cC-CcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-----CEEEEcC------CEEEEEEEEEE
Confidence            00 011112222110000   0000        011334788888776     4777776      79999988643

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.77  E-value=1.8  Score=21.88  Aligned_cols=31  Identities=19%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             cccccceEEEEECCCCCEEEEEeC-C--CcEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGST-D--GTLSIF   36 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~-d--~~i~iw   36 (240)
                      ......-....|||||++|+-.+. +  |.-.||
T Consensus         5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334456778899999987776554 3  555555

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=88.34  E-value=19  Score=32.45  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCC---CCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEEecC
Q 026295           11 GTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPS---SSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus        11 ~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      +...++|+| +.+.||.....|...||++....   ...+.......++       ...-..+.|.++  ...|+.++. 
T Consensus       147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~--~~~lLv~~r-  223 (765)
T PF10214_consen  147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSD--SNRLLVCNR-  223 (765)
T ss_pred             ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCC--CCEEEEEcC-
Confidence            677899998 55799999999999999992111   0122211111111       122336788776  666666653 


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..+.++|+.....     ...-........|..+.-+|...+..|+..+  ..|.+.++..
T Consensus       224 ~~l~~~d~~~~~~-----~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  224 SKLMLIDFESNWQ-----TEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             CceEEEECCCCCc-----cchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            5688889876421     1111122344678888777731233333322  3577777765

These proteins are found in fungi.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.20  E-value=6.6  Score=32.41  Aligned_cols=108  Identities=16%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             CCEEEEEeCCCcEEEE-eCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295           21 GQRLATGSTDGTLSIF-DSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL   99 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   99 (240)
                      |.-|..++.||-|.-| |....++.....++.++-...++..+.  |++..+.+++-...|++.++.....        +
T Consensus       280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~~rkgF~~l~~~G~L~~f~st~~--------~  349 (733)
T COG4590         280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PETNRKGFYSLYRNGTLQSFYSTSE--------K  349 (733)
T ss_pred             ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeec--cccccceEEEEcCCCceeeeecccC--------c
Confidence            4567788889888776 555443334444444443334444443  4433567888888888887765442        2


Q ss_pred             EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295          100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      ..-++..-..+.-+++||  ++.++++-. .|.++++.+...
T Consensus       350 ~lL~~~~~~~~~~~~~Sp--~~~~Ll~e~-~gki~~~~l~Nr  388 (733)
T COG4590         350 LLLFERAYQAPQLVAMSP--NQAYLLSED-QGKIRLAQLENR  388 (733)
T ss_pred             ceehhhhhcCcceeeeCc--ccchheeec-CCceEEEEecCC
Confidence            222222223566789999  888777654 467999988764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.97  E-value=12  Score=29.77  Aligned_cols=25  Identities=16%  Similarity=0.116  Sum_probs=20.2

Q ss_pred             EEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295          110 VLDVQFGVSSTSLKLVAAYSDGHVKVYE  137 (240)
Q Consensus       110 v~~~~~~~~~~~~~l~~~~~dg~v~iw~  137 (240)
                      .+.|+|.|  +|.+ +++...|.|++++
T Consensus         4 P~~~a~~p--dG~l-~v~e~~G~i~~~~   28 (331)
T PF07995_consen    4 PRSMAFLP--DGRL-LVAERSGRIWVVD   28 (331)
T ss_dssp             EEEEEEET--TSCE-EEEETTTEEEEEE
T ss_pred             ceEEEEeC--CCcE-EEEeCCceEEEEe
Confidence            47899999  8875 4556699999998

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=87.75  E-value=0.33  Score=42.78  Aligned_cols=111  Identities=15%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             ECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc-c-EEEEEEcCC-------CCCCEEEEEec-CCeEEEEE
Q 026295           17 WNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG-A-ILKVVWVPP-------EFGDAVACICS-DGSLLLWE   86 (240)
Q Consensus        17 ~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~-~-v~~~~~~~~-------~~~~~l~s~~~-d~~v~iwd   86 (240)
                      .||||+.||.+..||.++.|.+.-.+....+++...+.|++ + |+.+ +...       .+-.++++++. ...+++|.
T Consensus       243 lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~  321 (1283)
T KOG1916|consen  243 LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWA  321 (1283)
T ss_pred             eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEee
Confidence            68999999999999999999886444334566677777763 2 3333 2211       01123444433 44677887


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc------------EEEEEeCCCcEEEEEecC
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL------------KLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------~l~~~~~dg~v~iw~~~~  140 (240)
                      ..       .|+|+  +......|..+.  |+ ++.            .++.-+.++.|++|.-+.
T Consensus       322 ~a-------~w~Cl--l~~~~d~v~iV~--p~-~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~  375 (1283)
T KOG1916|consen  322 EA-------PWQCL--LDKLIDGVQIVG--PH-DGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK  375 (1283)
T ss_pred             cc-------chhhh--hhhcccceEeec--CC-CccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence            63       35665  222223344443  31 222            133456778888886543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.72  E-value=3  Score=30.92  Aligned_cols=67  Identities=18%  Similarity=0.248  Sum_probs=41.6

Q ss_pred             CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee-------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE-------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      ++++++.+.+|.+++||+...............+.       .....|..+.++.  +|.-+++-+ +|....|+..
T Consensus        22 ~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~--~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   22 GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS--NGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC--CCCEEEEEe-CCCEEEeccc
Confidence            78888999999999999987621100000000011       2345677777765  787665544 5778888765

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.22  E-value=15  Score=30.25  Aligned_cols=172  Identities=12%  Similarity=0.146  Sum_probs=78.9

Q ss_pred             EEEECCCCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecC---ccEEEEEEcCCCCCCEEEEEec------
Q 026295           14 SSSWNYCGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHA---GAILKVVWVPPEFGDAVACICS------   78 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~~------   78 (240)
                      .+..-|+|+.++++-.|      |-+-++|-+     +++.........   ..-+++-|.|.  .+.++|...      
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~-----tf~v~g~We~~~~~~~~gYDfw~qpr--~nvMiSSeWg~P~~~  206 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGE-----TFEVKGRWEKDRGPQPFGYDFWYQPR--HNVMISSEWGAPSMF  206 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TT-----T--EEEE--SB-TT------EEEETT--TTEEEE-B---HHHH
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCc-----cccccceeccCCCCCCCCCCeEEcCC--CCEEEEeccCChhhc
Confidence            44455788888886432      335566665     556665554322   23456777776  666666532      


Q ss_pred             --------------CCeEEEEEeeeccCCCcccEEEEEeeecc--ccEEeEEEeecCCCcE-EEEEeCCCcEEEEEecCc
Q 026295           79 --------------DGSLLLWEEIVEDAQPLQWKLCKSFESTS--TQVLDVQFGVSSTSLK-LVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        79 --------------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~  141 (240)
                                    -.++.+||+...       +.++++....  .....|.|...++..+ ++.+-...+|-.|--.. 
T Consensus       207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r-------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-  278 (461)
T PF05694_consen  207 EKGFNPEDLEAGKYGHSLHVWDWSTR-------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-  278 (461)
T ss_dssp             TT---TTTHHHH-S--EEEEEETTTT-------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-
T ss_pred             ccCCChhHhhcccccCeEEEEECCCC-------cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-
Confidence                          258999999887       8888887532  3456778865434443 23233344444443211 


Q ss_pred             ccccceeEEeeeeccccee---------eccccccceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCCC
Q 026295          142 LILKNWQLQAEFQNAIDSV---------TMFRKASCISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~~  211 (240)
                        ...|+....+......+         .+++....-+..+..+.+..     +|.+. ...     |.||.||+.....
T Consensus       279 --~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr-----fLYvs~W~~-----GdvrqYDISDP~~  346 (461)
T PF05694_consen  279 --DGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR-----FLYVSNWLH-----GDVRQYDISDPFN  346 (461)
T ss_dssp             --TTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS------EEEEEETTT-----TEEEEEE-SSTTS
T ss_pred             --CCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC-----EEEEEcccC-----CcEEEEecCCCCC
Confidence              13355554444333221         11222233445888888875     55554 455     9999999987654


Q ss_pred             C
Q 026295          212 R  212 (240)
Q Consensus       212 ~  212 (240)
                      .
T Consensus       347 P  347 (461)
T PF05694_consen  347 P  347 (461)
T ss_dssp             -
T ss_pred             C
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=87.02  E-value=15  Score=29.80  Aligned_cols=28  Identities=14%  Similarity=0.103  Sum_probs=16.2

Q ss_pred             CCCEEEEEeCCC-----------cEEEEeCCCCCCCcEEEEe
Q 026295           20 CGQRLATGSTDG-----------TLSIFDSPDPSSSSFTCNL   50 (240)
Q Consensus        20 ~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~   50 (240)
                      ++.+.+.|+.+.           .+..||....   +|..+.
T Consensus        84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n---~W~~~~  122 (376)
T PRK14131         84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN---SWQKLD  122 (376)
T ss_pred             CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC---EEEeCC
Confidence            466666666432           3666777643   565544

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=86.96  E-value=24  Score=32.20  Aligned_cols=113  Identities=17%  Similarity=0.217  Sum_probs=76.3

Q ss_pred             ceEEEEECCC-CCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295           11 GTTSSSWNYC-GQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus        11 ~v~~~~~s~~-~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      .|.++.|..| +.++++|.          ..|.|.||.....+  ..+.+..... ++.+.++.-- +  |+++|.-  .
T Consensus       776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~--~L~~v~e~~v-~Gav~aL~~f-n--gkllA~I--n  847 (1096)
T KOG1897|consen  776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN--SLELVAETVV-KGAVYALVEF-N--GKLLAGI--N  847 (1096)
T ss_pred             eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC--ceeeeeeeee-ccceeehhhh-C--CeEEEec--C
Confidence            3445567776 67888775          23677777776411  4445544443 4566666542 2  6666655  4


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..|++|+...+       +.++.-..+...+..+...-  .+..+++|..-+.+.+...+.
T Consensus       848 ~~vrLye~t~~-------~eLr~e~~~~~~~~aL~l~v--~gdeI~VgDlm~Sitll~y~~  899 (1096)
T KOG1897|consen  848 QSVRLYEWTTE-------RELRIECNISNPIIALDLQV--KGDEIAVGDLMRSITLLQYKG  899 (1096)
T ss_pred             cEEEEEEcccc-------ceehhhhcccCCeEEEEEEe--cCcEEEEeeccceEEEEEEec
Confidence            58999999765       56666666777788888876  899999999888888877764

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.82  E-value=13  Score=32.74  Aligned_cols=121  Identities=12%  Similarity=0.096  Sum_probs=74.5

Q ss_pred             ceEEEEECC--CCCEEEEEeCCCcEEEEeCCC-------C----CC----CcEEEEeEeeecCccEEEEEEc--CCCCCC
Q 026295           11 GTTSSSWNY--CGQRLATGSTDGTLSIFDSPD-------P----SS----SSFTCNLKTKVHAGAILKVVWV--PPEFGD   71 (240)
Q Consensus        11 ~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~-------~----~~----~~~~~~~~~~~h~~~v~~~~~~--~~~~~~   71 (240)
                      .|+-+....  ....|+.|..||.|.+|..+.       .    ..    ...++...+. -...++.+++.  ..  .+
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~--~r  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKK--SR  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCc--ce
Confidence            455555544  446899999999999997621       0    00    0011222223 23568889986  44  67


Q ss_pred             EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCC---C-cEEEEEeCCCcEEEEEe
Q 026295           72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST---S-LKLVAAYSDGHVKVYEL  138 (240)
Q Consensus        72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~-~~l~~~~~dg~v~iw~~  138 (240)
                      ++|.++....|.||-+...+..   +..... ..+...|.+|+|-+...   | ..+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r---~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDER---FYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccc---cccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7777777778888876542110   011111 12557889999987431   2 26888899999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.73  E-value=13  Score=28.84  Aligned_cols=97  Identities=13%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe------cCCeEEEEEeeeccCCCcccEEEEE-e
Q 026295           31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC------SDGSLLLWEEIVEDAQPLQWKLCKS-F  103 (240)
Q Consensus        31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~~~~~~-~  103 (240)
                      ..|++||....   .|....  .+-.+.|.+|.|...  .++++.|.      ....+..||....     .|..+.. .
T Consensus        16 ~~lC~yd~~~~---qW~~~g--~~i~G~V~~l~~~~~--~~Llv~G~ft~~~~~~~~la~yd~~~~-----~w~~~~~~~   83 (281)
T PF12768_consen   16 PGLCLYDTDNS---QWSSPG--NGISGTVTDLQWASN--NQLLVGGNFTLNGTNSSNLATYDFKNQ-----TWSSLGGGS   83 (281)
T ss_pred             CEEEEEECCCC---EeecCC--CCceEEEEEEEEecC--CEEEEEEeeEECCCCceeEEEEecCCC-----eeeecCCcc
Confidence            46899998744   443322  224578999999755  56666653      3446778888653     3443333 1


Q ss_pred             -eeccccEEeEEEeecCCCcEEEEEe-CC--CcEEEEEec
Q 026295          104 -ESTSTQVLDVQFGVSSTSLKLVAAY-SD--GHVKVYELL  139 (240)
Q Consensus       104 -~~~~~~v~~~~~~~~~~~~~l~~~~-~d--g~v~iw~~~  139 (240)
                       ..-..+|..+.+......++.++|. .+  ..|..||=.
T Consensus        84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs  123 (281)
T PF12768_consen   84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS  123 (281)
T ss_pred             cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence             1223667777775432344454444 23  345666544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=86.57  E-value=13  Score=28.52  Aligned_cols=108  Identities=8%  Similarity=0.025  Sum_probs=60.6

Q ss_pred             eEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccE--EEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           12 TTSSSWNYCGQRLATGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAI--LKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ...+.|..+|.++-+.+.-|  .|+.+|+.     +++......-. ...  -.++...   ..+..-.=.++...+||.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~-----tg~~~~~~~l~-~~~FgEGit~~~---d~l~qLTWk~~~~f~yd~  117 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLE-----TGKVLQSVPLP-PRYFGEGITILG---DKLYQLTWKEGTGFVYDP  117 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETT-----TSSEEEEEE-T-TT--EEEEEEET---TEEEEEESSSSEEEEEET
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECC-----CCcEEEEEECC-ccccceeEEEEC---CEEEEEEecCCeEEEEcc
Confidence            45678877888888887776  67888887     33333322211 111  1222212   222223345677888888


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      .+.       +.+.++.-. ..=+.++.    ++..|+.......+.++|..+
T Consensus       118 ~tl-------~~~~~~~y~-~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~  158 (264)
T PF05096_consen  118 NTL-------KKIGTFPYP-GEGWGLTS----DGKRLIMSDGSSRLYFLDPET  158 (264)
T ss_dssp             TTT-------EEEEEEE-S-SS--EEEE----CSSCEEEE-SSSEEEEE-TTT
T ss_pred             ccc-------eEEEEEecC-CcceEEEc----CCCEEEEECCccceEEECCcc
Confidence            654       777777543 33356653    666677666677899999876

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.49  E-value=18  Score=30.23  Aligned_cols=55  Identities=11%  Similarity=0.130  Sum_probs=36.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-----ecCccEEEEEEcCC
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-----VHAGAILKVVWVPP   67 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~   67 (240)
                      ..-+.|+|.|+|++|++-...|.|++++....   ....+..+.     .-.+....|+++|+
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~---~~~~~~~l~~v~~~~ge~GLlglal~Pd   89 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETG---EVKVVFTLPEIVNDAQHNGLLGLALHPD   89 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC---ceeeeecCCceeccCCCCceeeEEECCC
Confidence            34678999999988877665699999875422   111221111     12566889999887

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.46  E-value=5.3  Score=34.15  Aligned_cols=69  Identities=13%  Similarity=0.145  Sum_probs=38.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCC--CCcEEEEeEeee--------------------cCccEEEEEEcC----CCCCCE
Q 026295           19 YCGQRLATGSTDGTLSIFDSPDPS--SSSFTCNLKTKV--------------------HAGAILKVVWVP----PEFGDA   72 (240)
Q Consensus        19 ~~~~~l~~~~~d~~i~iw~~~~~~--~~~~~~~~~~~~--------------------h~~~v~~~~~~~----~~~~~~   72 (240)
                      ++...|+.+..||.+-........  ...+.... +..                    -...+..+....    .  ..+
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  232 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEEL-FNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEIND--DTF  232 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ET--TTE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEE-eCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCC--CCE
Confidence            466788888899988877765311  00111110 000                    113345555555    4  678


Q ss_pred             EEEEecCCeEEEEEeeec
Q 026295           73 VACICSDGSLLLWEEIVE   90 (240)
Q Consensus        73 l~s~~~d~~v~iwd~~~~   90 (240)
                      +++.+.|+.+|+||+.++
T Consensus       233 l~tl~~D~~LRiW~l~t~  250 (547)
T PF11715_consen  233 LFTLSRDHTLRIWSLETG  250 (547)
T ss_dssp             EEEEETTSEEEEEETTTT
T ss_pred             EEEEeCCCeEEEEECCCC
Confidence            999999999999999876

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=85.90  E-value=15  Score=28.91  Aligned_cols=62  Identities=13%  Similarity=0.022  Sum_probs=33.9

Q ss_pred             CCEEEEEecC-----CeEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCc----EEEEEec
Q 026295           70 GDAVACICSD-----GSLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGH----VKVYELL  139 (240)
Q Consensus        70 ~~~l~s~~~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~----v~iw~~~  139 (240)
                      +.+.+.|+..     ..+..||+..     ..|..+..+.. .....  .....  ++.+.+.|+.++.    +.+||+.
T Consensus       124 ~~iYv~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~~p~~~r~~~--~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~  194 (323)
T TIGR03548       124 GTLYVGGGNRNGKPSNKSYLFNLET-----QEWFELPDFPGEPRVQP--VCVKL--QNELYVFGGGSNIAYTDGYKYSPK  194 (323)
T ss_pred             CEEEEEeCcCCCccCceEEEEcCCC-----CCeeECCCCCCCCCCcc--eEEEE--CCEEEEEcCCCCccccceEEEecC
Confidence            5556666542     3566777654     46777655432 11211  22223  6677777776542    4577776


Q ss_pred             C
Q 026295          140 D  140 (240)
Q Consensus       140 ~  140 (240)
                      +
T Consensus       195 ~  195 (323)
T TIGR03548       195 K  195 (323)
T ss_pred             C
Confidence            5

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=85.81  E-value=18  Score=29.66  Aligned_cols=109  Identities=15%  Similarity=0.112  Sum_probs=57.4

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED   91 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   91 (240)
                      ...+..+++|.+++.+..-..++-||--.   ..|+.+..  .....+..+.|.++  +.+++.+ .+|.+.. ....+ 
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~---~~W~~~~~--~~~~~l~~v~~~~d--g~l~l~g-~~G~l~~-S~d~G-  310 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ---PYWQPHNR--ASARRIQNMGWRAD--GGLWLLT-RGGGLYV-SKGTG-  310 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCC---cceEEecC--CCccceeeeeEcCC--CCEEEEe-CCceEEE-ecCCC-
Confidence            44456677887777765532222333321   12343331  22456889999887  7776654 5666543 22222 


Q ss_pred             CCCcccE--EEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295           92 AQPLQWK--LCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY  136 (240)
Q Consensus        92 ~~~~~~~--~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  136 (240)
                         ..|.  .......  ....+..+.|.+  ++. ++.++..|.+...
T Consensus       311 ---~~~~~~~f~~~~~~~~~~~l~~v~~~~--d~~-~~a~G~~G~v~~s  353 (398)
T PLN00033        311 ---LTEEDFDFEEADIKSRGFGILDVGYRS--KKE-AWAAGGSGILLRS  353 (398)
T ss_pred             ---CcccccceeecccCCCCcceEEEEEcC--CCc-EEEEECCCcEEEe
Confidence               1121  1122211  224578888876  666 5566667866543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=85.64  E-value=16  Score=29.03  Aligned_cols=42  Identities=10%  Similarity=0.024  Sum_probs=22.0

Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCC
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      ..+.+||..+     ..|..+..+.. ..... +++ ..  ++++++.|+.+
T Consensus       168 ~~v~~YDp~t-----~~W~~~~~~p~~~r~~~-~~~-~~--~~~iyv~GG~~  210 (346)
T TIGR03547       168 KNVLSYDPST-----NQWRNLGENPFLGTAGS-AIV-HK--GNKLLLINGEI  210 (346)
T ss_pred             ceEEEEECCC-----CceeECccCCCCcCCCc-eEE-EE--CCEEEEEeeee
Confidence            3567777754     46777655542 11222 222 22  66777777643

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=85.29  E-value=14  Score=33.00  Aligned_cols=32  Identities=16%  Similarity=0.392  Sum_probs=25.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeC
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDS   38 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~   38 (240)
                      ..++.|...+||.|.+.++....+..|-+++.
T Consensus       110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k  141 (1243)
T COG5290         110 KVSNGIVAASWSADEKTWCVVTSTREILLFDK  141 (1243)
T ss_pred             cccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence            34568899999999997777777788888764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.14  E-value=16  Score=28.38  Aligned_cols=103  Identities=16%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             EEEEEEcCCCCCCEEEEEecCCe-EEEEEeeeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeC-----C
Q 026295           59 ILKVVWVPPEFGDAVACICSDGS-LLLWEEIVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYS-----D  130 (240)
Q Consensus        59 v~~~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~-----d  130 (240)
                      -..|.++|. ...-++.+-.-|+ ..++|....       +.+.++..  .....-.-.|||  +|.+|.+.-.     .
T Consensus        70 ~Hgi~~~p~-~~ravafARrPGtf~~vfD~~~~-------~~pv~~~s~~~RHfyGHGvfs~--dG~~LYATEndfd~~r  139 (366)
T COG3490          70 GHGIAFHPA-LPRAVAFARRPGTFAMVFDPNGA-------QEPVTLVSQEGRHFYGHGVFSP--DGRLLYATENDFDPNR  139 (366)
T ss_pred             cCCeecCCC-CcceEEEEecCCceEEEECCCCC-------cCcEEEecccCceeecccccCC--CCcEEEeecCCCCCCC
Confidence            345677766 2334445544454 467888665       33333322  122223356888  9997665433     3


Q ss_pred             CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          131 GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       131 g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      |.|-|||.+..     ++.+-++..+....+          .+.|.+++.     .++++.
T Consensus       140 GViGvYd~r~~-----fqrvgE~~t~GiGpH----------ev~lm~DGr-----tlvvan  180 (366)
T COG3490         140 GVIGVYDAREG-----FQRVGEFSTHGIGPH----------EVTLMADGR-----TLVVAN  180 (366)
T ss_pred             ceEEEEecccc-----cceecccccCCcCcc----------eeEEecCCc-----EEEEeC
Confidence            67899999853     555556655543333          889999987     666665

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.52  E-value=23  Score=29.82  Aligned_cols=53  Identities=13%  Similarity=0.046  Sum_probs=26.3

Q ss_pred             EEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecccc---EEeEEEeecCCCcEEEEEe
Q 026295           62 VVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQ---VLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        62 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~~~~  128 (240)
                      +...++  |.+++...  ..+..+|...        +.+.........   -..+...|  +|++|+.+.
T Consensus       153 ~~~l~n--G~ll~~~~--~~~~e~D~~G--------~v~~~~~l~~~~~~~HHD~~~l~--nGn~L~l~~  208 (477)
T PF05935_consen  153 FKQLPN--GNLLIGSG--NRLYEIDLLG--------KVIWEYDLPGGYYDFHHDIDELP--NGNLLILAS  208 (477)
T ss_dssp             EEE-TT--S-EEEEEB--TEEEEE-TT----------EEEEEE--TTEE-B-S-EEE-T--TS-EEEEEE
T ss_pred             eeEcCC--CCEEEecC--CceEEEcCCC--------CEEEeeecCCcccccccccEECC--CCCEEEEEe
Confidence            555677  88776554  6788888754        444444332211   24556666  888887777

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.16  E-value=38  Score=32.00  Aligned_cols=102  Identities=16%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC------CEEEEEecCCeEEEEEeeeccCC--CcccEE
Q 026295           28 STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG------DAVACICSDGSLLLWEEIVEDAQ--PLQWKL   99 (240)
Q Consensus        28 ~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~------~~l~s~~~d~~v~iwd~~~~~~~--~~~~~~   99 (240)
                      +-|..+.+|+....     .....+.+-...|..|....++.|      ++++....--.|.++-+.-.+..  ...+.-
T Consensus        96 TiDn~L~lWny~~~-----~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~  170 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESD-----NELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNT  170 (1311)
T ss_pred             EeCCeEEEEEcCCC-----CccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccc
Confidence            35788999999853     233444454556666665433212      23333333455666665433211  011111


Q ss_pred             EEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295          100 CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus       100 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      ...+......|.++....  +|+.++ ++.||  .+|.+.
T Consensus       171 ~~~i~~dg~~V~~I~~t~--nGRIF~-~G~dg--~lyEl~  205 (1311)
T KOG1900|consen  171 SFKISVDGVSVNCITYTE--NGRIFF-AGRDG--NLYELV  205 (1311)
T ss_pred             ceeeecCCceEEEEEecc--CCcEEE-eecCC--CEEEEE
Confidence            122223345677777544  888555 45566  456553

>PLN02193 nitrile-specifier protein

Probab=83.50  E-value=26  Score=29.50  Aligned_cols=106  Identities=10%  Similarity=0.050  Sum_probs=51.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEe
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEE   87 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~   87 (240)
                      ++++.+.|+.+     ..+.+||+...   +|+.+..+..  ....-.++.. ..  +.+.+.|+.++     .+..||+
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~---~W~~l~~~~~~P~~R~~h~~~~-~~--~~iYv~GG~~~~~~~~~~~~yd~  301 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTN---EWKLLTPVEEGPTPRSFHSMAA-DE--ENVYVFGGVSATARLKTLDSYNI  301 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCC---EEEEcCcCCCCCCCccceEEEE-EC--CEEEEECCCCCCCCcceEEEEEC
Confidence            45566666654     34777887644   6665544310  0011112222 23  55666666543     3556665


Q ss_pred             eeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~  140 (240)
                      ..     ..|..+....   ..+.....+.+    ++.+++.++.+    ..+.+||+.+
T Consensus       302 ~t-----~~W~~~~~~~~~~~~R~~~~~~~~----~gkiyviGG~~g~~~~dv~~yD~~t  352 (470)
T PLN02193        302 VD-----KKWFHCSTPGDSFSIRGGAGLEVV----QGKVWVVYGFNGCEVDDVHYYDPVQ  352 (470)
T ss_pred             CC-----CEEEeCCCCCCCCCCCCCcEEEEE----CCcEEEEECCCCCccCceEEEECCC
Confidence            44     3455443211   11111112222    56666666654    4578888876

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=83.14  E-value=6.9  Score=34.66  Aligned_cols=96  Identities=22%  Similarity=0.404  Sum_probs=54.8

Q ss_pred             CccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEeeeccCCCcccEEEEEe---eeccccEEeEEEeecCCCcEEEEE
Q 026295           56 AGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEIVEDAQPLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        56 ~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                      ++.-..++|-|.  |..+++-+.||     .|..+.-...        .-..+   .+....+..++|+-  ....++.+
T Consensus       246 ~g~e~~LSWkpq--gS~~ati~td~~~~S~~ViFfErNGL--------rHGef~lr~~~dEk~~~~~wn~--~s~vlav~  313 (1243)
T COG5290         246 TGMEHQLSWKPQ--GSKYATIGTDGCSTSESVIFFERNGL--------RHGEFDLRVGCDEKAFLENWNL--LSTVLAVA  313 (1243)
T ss_pred             ccchhccccccC--CceeeeeccCCCCCcceEEEEccCCc--------ccCCccccCCchhhhhhhhhhH--HHHHHHHh
Confidence            344456899998  99999887665     3444443221        11111   11234456677855  44434433


Q ss_pred             eCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCC
Q 026295          128 YSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG  180 (240)
Q Consensus       128 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~  180 (240)
                       ..+.|++|-...    ..|-+..++....  +.          -+.|+|...
T Consensus       314 -~~n~~~lwttkN----yhWYLK~e~~ip~--~s----------~vkwhpe~~  349 (1243)
T COG5290         314 -EGNLLKLWTTKN----YHWYLKVERQIPG--IS----------YVKWHPEEK  349 (1243)
T ss_pred             -hcceEEEEEccc----eEEEEEEeecCCC--cc----------eeeeccccC
Confidence             345799998765    3355555554332  22          678999775

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.08  E-value=12  Score=25.34  Aligned_cols=118  Identities=13%  Similarity=0.096  Sum_probs=68.6

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC---cEEEEeEeeecCccEEEEE---EcCCCCCCEEEEEecCCeEEEEE
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS---SFTCNLKTKVHAGAILKVV---WVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~---~~~~~~~~~~h~~~v~~~~---~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      ..-+|+....-|+++..-|.|.|++.......   ....+..+.- ...|.+|+   |.|....+.|+.|+ ...+..||
T Consensus         2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-n~~italaaG~l~~~~~~D~LliGt-~t~llaYD   79 (136)
T PF14781_consen    2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI-NQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYD   79 (136)
T ss_pred             eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC-CCceEEEEEEecCCCCCcCEEEEec-cceEEEEE
Confidence            44578888888999999999999987643210   1112333332 34566664   43333356666665 56789999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecC
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +...       .-+. ++.-...|.++.+-.-.+ ..-++..+.+..|.-||...
T Consensus        80 V~~N-------~d~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G  126 (136)
T PF14781_consen   80 VENN-------SDLF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG  126 (136)
T ss_pred             cccC-------chhh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence            9765       2221 223346677777743111 22355555566777777653

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=83.02  E-value=4.5  Score=20.49  Aligned_cols=31  Identities=19%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeee
Q 026295           19 YCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKV   54 (240)
Q Consensus        19 ~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~   54 (240)
                      |++++|.++. .++.|.++|..     +.+.+..+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~-----~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTA-----TNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECC-----CCeEEEEEEC
Confidence            5676555544 57899999986     5556665554

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=82.34  E-value=27  Score=28.88  Aligned_cols=121  Identities=17%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEee---cCCCcEEEEEeCCCcEEEEEecCcccc--
Q 026295           70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGV---SSTSLKLVAAYSDGHVKVYELLDPLIL--  144 (240)
Q Consensus        70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~v~iw~~~~~~~~--  144 (240)
                      .+.++.|+..|.++||+.....-+..  ..+.+.+ -..+|..+....   ......||+ =.-..+.||.+......  
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~--~lllE~~-l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPE--DLLLETQ-LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCc--cEEEEEe-cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            56899999999999999854321111  1222222 335676666543   122233444 44567888887432211  


Q ss_pred             --cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          145 --KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       145 --~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                        ..+++.. +-.|.-..     ..   ..+++-|-+......++.+-+.|     |.+.+|+-+.
T Consensus       113 ~g~~~~L~~-~yeh~l~~-----~a---~nm~~G~Fgg~~~~~~IcVQS~D-----G~L~~feqe~  164 (418)
T PF14727_consen  113 HGNQYQLEL-IYEHSLQR-----TA---YNMCCGPFGGVKGRDFICVQSMD-----GSLSFFEQES  164 (418)
T ss_pred             cCcEEEEEE-EEEEeccc-----ce---eEEEEEECCCCCCceEEEEEecC-----ceEEEEeCCc
Confidence              0112111 11221110     11   15566666654445689999999     9999998654

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=82.33  E-value=3.8  Score=19.06  Aligned_cols=25  Identities=12%  Similarity=0.192  Sum_probs=17.0

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEE
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIF   36 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw   36 (240)
                      -..++++++|+.+++=+....|++|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            3567777777777776666666654

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=82.27  E-value=23  Score=28.16  Aligned_cols=89  Identities=9%  Similarity=-0.022  Sum_probs=41.3

Q ss_pred             CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC------eEEEEEeeeccCCCcccEEEEEee
Q 026295           31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG------SLLLWEEIVEDAQPLQWKLCKSFE  104 (240)
Q Consensus        31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~  104 (240)
                      ..+.+||....   +|..+..+......-..+.. .+  +.+.+.|+.+.      .+.++++...   ...|..+..+.
T Consensus       168 ~~v~~YDp~t~---~W~~~~~~p~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~y~~~~~---~~~W~~~~~m~  238 (346)
T TIGR03547       168 KNVLSYDPSTN---QWRNLGENPFLGTAGSAIVH-KG--NKLLLINGEIKPGLRTAEVKQYLFTGG---KLEWNKLPPLP  238 (346)
T ss_pred             ceEEEEECCCC---ceeECccCCCCcCCCceEEE-EC--CEEEEEeeeeCCCccchheEEEEecCC---CceeeecCCCC
Confidence            35778887644   67666544311111122222 33  56666666431      2334554221   14577666553


Q ss_pred             eccc----c-EEeEEEeecCCCcEEEEEeCC
Q 026295          105 STST----Q-VLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus       105 ~~~~----~-v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      ....    . ....+...  ++++++.|+.+
T Consensus       239 ~~r~~~~~~~~~~~a~~~--~~~Iyv~GG~~  267 (346)
T TIGR03547       239 PPKSSSQEGLAGAFAGIS--NGVLLVAGGAN  267 (346)
T ss_pred             CCCCCccccccEEeeeEE--CCEEEEeecCC
Confidence            3211    1 11112223  67777777753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences

Probab=81.34  E-value=9.1  Score=26.03  Aligned_cols=51  Identities=10%  Similarity=0.114  Sum_probs=26.7

Q ss_pred             EEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          173 ISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       173 v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      --|+++..     +|..++..|    +.|+.|.+...........+..    +..+...++|-|
T Consensus        16 P~yD~dt~-----llyl~gKGD----~~ir~yEv~~~~p~l~~l~~~~----s~~~~~G~~~lP   66 (136)
T PF08954_consen   16 PFYDEDTN-----LLYLAGKGD----GNIRYYEVSDESPYLHYLSEYR----SPEPQKGFAFLP   66 (136)
T ss_dssp             EEE-TTT------EEEEEETT-----S-EEEEEE-SSTTSEEEEEEE------SS--SEEEE--
T ss_pred             eeEcCCCC-----EEEEEeccC----cEEEEEEEcCCCCceEEccccc----cCCCeEeeEecC
Confidence            34777776     666666555    9999999987754444444443    444677788776

It has no known function []. ; PDB: 2B4E_A 2AQ5_A.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=81.09  E-value=28  Score=28.18  Aligned_cols=63  Identities=13%  Similarity=0.013  Sum_probs=33.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC--cEE-EEeEeee----cCccEEEEEEcCCCCCCEEEEEe
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS--SFT-CNLKTKV----HAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~--~~~-~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      ..+.+++.++| ++++ ......++.+.......  ..+ .+..+..    +......+.|.|+  |.+.++-+
T Consensus        73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpD--G~LYv~~G  142 (367)
T TIGR02604        73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPD--GWLYFNHG  142 (367)
T ss_pred             CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCC--CCEEEecc
Confidence            34678888888 5544 44433334454332111  112 2222322    1344778999998  88666544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=81.01  E-value=29  Score=28.41  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=42.0

Q ss_pred             EEEEEcCCCCCCEEEEE-ecCC----eEEEEEeeeccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCC--
Q 026295           60 LKVVWVPPEFGDAVACI-CSDG----SLLLWEEIVEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDG--  131 (240)
Q Consensus        60 ~~~~~~~~~~~~~l~s~-~~d~----~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--  131 (240)
                      ....++|+  +++++.+ +..|    .++++|+.++       +.+.. +...  ....+.|.+  ++..|+....+.  
T Consensus       127 ~~~~~Spd--g~~la~~~s~~G~e~~~l~v~Dl~tg-------~~l~d~i~~~--~~~~~~W~~--d~~~~~y~~~~~~~  193 (414)
T PF02897_consen  127 GGFSVSPD--GKRLAYSLSDGGSEWYTLRVFDLETG-------KFLPDGIENP--KFSSVSWSD--DGKGFFYTRFDEDQ  193 (414)
T ss_dssp             EEEEETTT--SSEEEEEEEETTSSEEEEEEEETTTT-------EEEEEEEEEE--ESEEEEECT--TSSEEEEEECSTTT
T ss_pred             eeeeECCC--CCEEEEEecCCCCceEEEEEEECCCC-------cCcCCccccc--ccceEEEeC--CCCEEEEEEeCccc
Confidence            35788899  9887754 3344    5899999776       44432 2321  122389988  877665555333  


Q ss_pred             ---------cEEEEEecCc
Q 026295          132 ---------HVKVYELLDP  141 (240)
Q Consensus       132 ---------~v~iw~~~~~  141 (240)
                               .|..|.+.++
T Consensus       194 ~~~~~~~~~~v~~~~~gt~  212 (414)
T PF02897_consen  194 RTSDSGYPRQVYRHKLGTP  212 (414)
T ss_dssp             SS-CCGCCEEEEEEETTS-
T ss_pred             ccccCCCCcEEEEEECCCC
Confidence                     3666776653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=80.32  E-value=0.11  Score=42.33  Aligned_cols=110  Identities=20%  Similarity=0.361  Sum_probs=71.6

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeecc
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVED   91 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~   91 (240)
                      ....|-+.+.-++.++.+..+..||-.+      +...... .++...+++|...  ++.++ .+-..+.+.+||+...-
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~ag------q~~le~n-~tg~aldm~wDke--gdvlavlAek~~piylwd~n~ey  108 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAG------QVILELN-PTGKALDMAWDKE--GDVLAVLAEKTGPIYLWDVNSEY  108 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhc------ceecccC-CchhHhhhhhccc--cchhhhhhhcCCCeeechhhhhh
Confidence            3456778776688888888999998763      2222222 2455667888776  66544 44557789999997632


Q ss_pred             CCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           92 AQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        92 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                              .+++.. ....-.-+.|++  ....++.+...|.+.|++..+.
T Consensus       109 --------tqqLE~gg~~s~sll~wsK--g~~el~ig~~~gn~viynhgts  149 (615)
T KOG2247|consen  109 --------TQQLESGGTSSKSLLAWSK--GTPELVIGNNAGNIVIYNHGTS  149 (615)
T ss_pred             --------HHHHhccCcchHHHHhhcc--CCccccccccccceEEEeccch
Confidence                    222221 111122277887  7778888888999999998763

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=80.01  E-value=27  Score=27.49  Aligned_cols=97  Identities=10%  Similarity=0.021  Sum_probs=47.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC----eEEEEEeeec
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG----SLLLWEEIVE   90 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~   90 (240)
                      +++..+.|+..     ..+..||+...   +|+.+..+.... ..........  +.+.+.|+.++    .+.+||... 
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~---~W~~~~~~p~~~-r~~~~~~~~~--~~iYv~GG~~~~~~~~~~~yd~~~-  195 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQ---EWFELPDFPGEP-RVQPVCVKLQ--NELYVFGGGSNIAYTDGYKYSPKK-  195 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCC---CeeECCCCCCCC-CCcceEEEEC--CEEEEEcCCCCccccceEEEecCC-
Confidence            45666666642     35777887644   676665443211 1111222234  66777776654    245677654 


Q ss_pred             cCCCcccEEEEEeeeccc-----cEEeEEEeecCCCcEEEEEeCC
Q 026295           91 DAQPLQWKLCKSFESTST-----QVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                          ..|..+..+.....     ....+.. .  ++.+++.|+.+
T Consensus       196 ----~~W~~~~~~~~~~~p~~~~~~~~~~~-~--~~~iyv~GG~~  233 (323)
T TIGR03548       196 ----NQWQKVADPTTDSEPISLLGAASIKI-N--ESLLLCIGGFN  233 (323)
T ss_pred             ----CeeEECCCCCCCCCceeccceeEEEE-C--CCEEEEECCcC
Confidence                35665544321001     1111222 1  46677777765

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3ewe_A	349	Crystal Structure Of The Nup85SEH1 COMPLEX Length =		7e-09
3f3f_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		7e-09
3f3p_A	351	Crystal Structure Of The Nucleoporin Pair Nup85-Seh		1e-08
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-08
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		8e-08
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-07
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		2e-07
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-06

>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX Length = 349

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 17  WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76
           +++ G+ +AT S+D  + +             +   + H  +I+ + W  PE+G  +A  
Sbjct: 17  YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD-SWRAHDSSIVAIDWASPEYGRIIASA 75
Query: 77  CSDGSLLLWEEIV--EDAQPLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133
             D ++ LWEE    E+    +W KLC +   +   +  V+F  +   LKL    +DG +
Sbjct: 76  SYDKTVKLWEEDPDQEECSGRRWNKLC-TLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 134
Query: 134 KVYELLDPLILKNWQLQAEFQ 154
           ++Y+ L+P  L++W L +E +
Sbjct: 135 RLYDALEPSDLRSWTLTSEMK 155

>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21 Length = 351

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 17  WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76
           +++ G+ +AT S+D  + +             +   + H  +I+ + W  PE+G  +A  
Sbjct: 19  YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD-SWRAHDSSIVAIDWASPEYGRIIASA 77
Query: 77  CSDGSLLLWEEIV--EDAQPLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133
             D ++ LWEE    E+    +W KLC +   +   +  V+F  +   LKL    +DG +
Sbjct: 78  SYDKTVKLWEEDPDQEECSGRRWNKLC-TLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136
Query: 134 KVYELLDPLILKNWQLQAEFQ 154
           ++Y+ L+P  L++W L +E +
Sbjct: 137 RLYDALEPSDLRSWTLTSEMK 157

>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1, Space Group P21212 Length = 351

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 17  WNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76
           +++ G+ +AT S+D  + +             +   + H  +I+ + W  PE+G  +A  
Sbjct: 19  YDFYGRHVATCSSDQHIKVFKLDKDTSNWELSD-SWRAHDSSIVAIDWASPEYGRIIASA 77
Query: 77  CSDGSLLLWEEIV--EDAQPLQW-KLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHV 133
             D ++ LWEE    E+    +W KLC +   +   +  V+F  +   LKL    +DG +
Sbjct: 78  SYDKTVKLWEEDPDQEECSGRRWNKLC-TLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136
Query: 134 KVYELLDPLILKNWQLQAEFQ 154
           ++Y+ L+P  L++W L +E +
Sbjct: 137 RLYDALEPSDLRSWTLTSEXK 157

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 30/225 (13%)
Query: 18  NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
           +Y G+RLAT S+D T+ I                   H G + +V W  P+FG  +A   
Sbjct: 18  DYYGKRLATCSSDKTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 78  SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
            DG +L+W+E     +  +W         S  V  VQ+        L+ A SDG V V E
Sbjct: 75  YDGKVLIWKE-----ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP----QKGENQGSSFVLGFNS 193
                           +N   S  +    +    S SW P    + GE+ G+     F +
Sbjct: 130 FK--------------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175
Query: 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238
                N  K+W+++     ++  + L   E  SD V  VAW+  +
Sbjct: 176 GGAD-NLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTV 216

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 30/225 (13%)
Query: 18  NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
           +Y G+RLAT S+D T+ I                   H G + +V W  P+FG  +A   
Sbjct: 20  DYYGKRLATCSSDKTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCS 76
Query: 78  SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
            DG +L+W+E     +  +W         S  V  VQ+        L+ A SDG V V E
Sbjct: 77  YDGKVLIWKE-----ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 131
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP----QKGENQGSSFVLGFNS 193
                           +N   S  +    +    S SW P    + GE+ G+     F +
Sbjct: 132 FK--------------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 177
Query: 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238
                N  K+W+++     ++  + L   E  SD V  VAW+  +
Sbjct: 178 GGAD-NLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTV 218

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 30/225 (13%)
Query: 18  NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
           +Y G+R+AT S+D T+ I                   H G + +V W  P+FG  +A   
Sbjct: 18  DYYGKRMATCSSDKTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 78  SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
            DG +++W+E     +  +W         S  V  VQ+        L+ A SDG V V E
Sbjct: 75  YDGKVMIWKE-----ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP----QKGENQGSSFVLGFNS 193
                           +N   S  +    +    S SW P    + GE+ G+     F +
Sbjct: 130 FK--------------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175
Query: 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238
                N  K+W+++     ++  + L   E  SD V  VAW+  +
Sbjct: 176 GGAD-NLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTV 216

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 87/222 (39%), Gaps = 30/222 (13%)
Query: 18  NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
           +Y G+RLAT S+D T+ I                   H G + +V W  P+FG  +A   
Sbjct: 18  DYYGKRLATCSSDKTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 78  SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
            DG +L+W+E     +  +W         S  V  VQ+        L+ A SDG V V E
Sbjct: 75  YDGKVLIWKE-----ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVE 129
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP----QKGENQGSSFVLGFNS 193
                           +N   S  +    +    S SW P    + GE+ G+     F +
Sbjct: 130 FK--------------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175
Query: 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA 235
                N  K+W+++     ++  + L   E  SD V  VAW+
Sbjct: 176 GGAD-NLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWS 213

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 30/225 (13%)
Query: 18  NYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACIC 77
           +Y G+R AT S+D T+ I                   H G + +V W  P+FG  +A   
Sbjct: 18  DYYGKRXATCSSDKTIKIFEVEGETHKLIDT---LTGHEGPVWRVDWAHPKFGTILASCS 74
Query: 78  SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE 137
            DG + +W+E     +  +W         S  V  VQ+        L+ A SDG V V E
Sbjct: 75  YDGKVXIWKE-----ENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVE 129
Query: 138 LLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP----QKGENQGSSFVLGFNS 193
                           +N   S  +    +    S SW P    + GE+ G+     F +
Sbjct: 130 FK--------------ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVT 175
Query: 194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI 238
                N  K+W+++     ++  + L   E  SD V  VAW+  +
Sbjct: 176 GGAD-NLVKIWKYNSDAQTYVLESTL---EGHSDWVRDVAWSPTV 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.97
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.96
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.96
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.96
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.95
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.95
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.95
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.95
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.95
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.95
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.95
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.95
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.94
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.94
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.94
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.91
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.91
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.9
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.89
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.89
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.89
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.84
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.79
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.78
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.77
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.77
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.75
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.74
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.74
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.73
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.73
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.73
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.71
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.7
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.67
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.66
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.66
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.65
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.64
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.61
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.59
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.57
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.56
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.53
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.52
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.47
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.47
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.43
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.41
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.4
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.39
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.39
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.36
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.35
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.33
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.32
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.31
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.29
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.29
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.28
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.23
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.22
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.22
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.21
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.2
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.18
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.17
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.16
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.14
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.12
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.09
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.07
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.06
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.03
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.02
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.02
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.99
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.98
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.97
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.93
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.92
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.91
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.88
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.88
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.82
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.81
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.8
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.78
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.72
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.71
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.68
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.59
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.59
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.56
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.5
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.46
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.41
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.41
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.21
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.16
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.16
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.07
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.88
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.87
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.81
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	97.79
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.72
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.71
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.71
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.7
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.63
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.61
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.6
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.59
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.55
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.43
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.4
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.39
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.27
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.24
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.23
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.2
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.16
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.16
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.14
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.14
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.09
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.09
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.08
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.96
2p4o_A	306	Hypothetical protein; putative lactonase, structur	96.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.86
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.85
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.85
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.84
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.76
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.76
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	96.75
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.73
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.69
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.68
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.61
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.52
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	96.5
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.44
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.43
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.42
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.38
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.31
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.28
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.28
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.22
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.18
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.01
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	95.94
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	95.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.86
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.86
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.79
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.73
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.63
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.63
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.62
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.43
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.38
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	95.33
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.3
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	94.76
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	94.7
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.65
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.48
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.41
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	94.31
3kya_A	496	Putative phosphatase; structural genomics, joint c	94.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.23
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	93.89
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	93.29
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.06
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.96
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	92.71
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	92.1
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	91.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	90.56
3v9f_A	781	Two-component system sensor histidine kinase/RESP	90.42
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	89.28
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	89.19
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	89.18
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	84.38
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.87
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	81.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	80.87
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	80.75

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.2e-34  Score=221.80  Aligned_cols=208  Identities=26%  Similarity=0.421  Sum_probs=162.6

Q ss_pred             CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |...+.+|.+.|++++|+|+|++||+|+.|++|+||++...   ..+++..+.+|.++|.+++|+|+..+.+|++++.|+
T Consensus         1 ~~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~---~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~   77 (297)
T 2pm7_B            1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (297)
T ss_dssp             -CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSS---CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTT
T ss_pred             CceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCC---CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCC
Confidence            44567889999999999999999999999999999999743   335677889999999999998743378999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +|++||+..+     .+..+..+..|...|.+++|+|...+.+|++++.|++|++||++.....    ....+..|...+
T Consensus        78 ~v~iWd~~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~----~~~~~~~h~~~v  148 (297)
T 2pm7_B           78 KVMIWKEENG-----RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT----SPIIIDAHAIGV  148 (297)
T ss_dssp             EEEEEEBSSS-----CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB----CCEEEECCSSCE
T ss_pred             EEEEEEcCCC-----ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce----eeeeeecccCcc
Confidence            9999999754     1245566778889999999999333889999999999999999863111    123345565555


Q ss_pred             eccccccceeeeEEEeCCCCC--------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295          161 TMFRKASCISASISWNPQKGE--------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~--------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v  232 (240)
                      .          +++|+|+...        ..+.+|++|+.|     +.|+|||+++....+.....+.   +|...|++|
T Consensus       149 ~----------~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D-----~~v~lwd~~~~~~~~~~~~~l~---~H~~~V~~v  210 (297)
T 2pm7_B          149 N----------SASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLE---GHSDWVRDV  210 (297)
T ss_dssp             E----------EEEECCCC------------CCEEEEEETT-----SCEEEEEEETTTTEEEEEEEEC---CCSSCEEEE
T ss_pred             c----------eEeecCCcccccccCCCCCCcceEEEEcCC-----CcEEEEEEcCCCceEEEEEEec---CCCCceEEE
Confidence            5          8999997421        112389999999     9999999987665444444444   688899999


Q ss_pred             EEecCC
Q 026295          233 AWALNI  238 (240)
Q Consensus       233 ~~sp~~  238 (240)
                      +|+|++
T Consensus       211 ~~sp~~  216 (297)
T 2pm7_B          211 AWSPTV  216 (297)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.2e-35  Score=228.25  Aligned_cols=187  Identities=15%  Similarity=0.118  Sum_probs=155.9

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v~   83 (240)
                      +.+|.+.|++++|+|+|++|++|+.|++|+|||+.     +.+++..+.+|...|.+++|+++  + .+|++++.|++|+
T Consensus       123 ~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-----~~~~~~~~~~h~~~V~~~~~~~~--~~~~l~s~s~D~~v~  195 (344)
T 4gqb_B          123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-----QQVVLSSYRAHAAQVTCVAASPH--KDSVFLSCSEDNRIL  195 (344)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEECSS--CTTEEEEEETTSCEE
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-----CCcEEEEEcCcCCceEEEEecCC--CCCceeeeccccccc
Confidence            34799999999999999999999999999999998     66889999999999999999998  6 5789999999999


Q ss_pred             EEEeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      +||++.+       ++...+.  .+...+.+++|+|. ++.+|++|+.||+|++||+++      .+++..+..|...|.
T Consensus       196 iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~p~-~~~~l~sg~~dg~v~~wd~~~------~~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          196 LWDTRCP-------KPASQIGCSAPGYLPTSLAWHPQ-QSEVFVFGDENGTVSLVDTKS------TSCVLSSAVHSQCVT  261 (344)
T ss_dssp             EEETTSS-------SCEEECC----CCCEEEEEECSS-CTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEE
T ss_pred             ccccccc-------ceeeeeecceeeccceeeeecCC-CCcceEEeccCCcEEEEECCC------CcEEEEEcCCCCCEE
Confidence            9999876       5555553  34567899999883 456789999999999999987      567778888887777


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                +++|+|++..    +|++|+.|     ++|+|||+.+++    . ..+   .+|.+.|++|+|+|++.
T Consensus       262 ----------~v~fsp~g~~----~lasgs~D-----~~i~vwd~~~~~----~-~~~---~~H~~~V~~v~~sp~~~  312 (344)
T 4gqb_B          262 ----------GLVFSPHSVP----FLASLSED-----CSLAVLDSSLSE----L-FRS---QAHRDFVRDATWSPLNH  312 (344)
T ss_dssp             ----------EEEECSSSSC----CEEEEETT-----SCEEEECTTCCE----E-EEE---CCCSSCEEEEEECSSST
T ss_pred             ----------EEEEccCCCe----EEEEEeCC-----CeEEEEECCCCc----E-EEE---cCCCCCEEEEEEeCCCC
Confidence                      9999998742    79999999     999999987643    1 222   36888999999999975

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=220.98  Aligned_cols=197  Identities=19%  Similarity=0.363  Sum_probs=161.9

Q ss_pred             chhccccc-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE-eeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDK-GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK-TKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~-~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +.+..|.+ .|.+++|+|+|++||+|+.|++|+||++...   ....... ..+|...|.+++|+|+  +++|++++.|+
T Consensus         9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~---~~~~~~~~~~~h~~~v~~~~~sp~--g~~l~s~s~D~   83 (345)
T 3fm0_A            9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGD---SWICKSVLSEGHQRTVRKVAWSPC--GNYLASASFDA   83 (345)
T ss_dssp             EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETT---EEEEEEEECSSCSSCEEEEEECTT--SSEEEEEETTS
T ss_pred             eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCC---cceeeeeeccccCCcEEEEEECCC--CCEEEEEECCC
Confidence            45778887 8999999999999999999999999999743   2222222 3589999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|++|++....     +.++..+.+|...|.+++|+|  ++.+|++++.|++|++||++...   ...+...+..|...+
T Consensus        84 ~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~---~~~~~~~~~~h~~~v  153 (345)
T 3fm0_A           84 TTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEED---EYECVSVLNSHTQDV  153 (345)
T ss_dssp             CEEEEEECCC------EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTS---CEEEEEEECCCCSCE
T ss_pred             cEEEEEccCCC-----eEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCC---CeEEEEEecCcCCCe
Confidence            99999987542     256788889999999999999  99999999999999999997631   234555666776666


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          +++|+|++.     +|++|+.|     +.|++|+.....  +.....+.   +|...|++++|+|++.
T Consensus       154 ~----------~~~~~p~~~-----~l~s~s~d-----~~i~~w~~~~~~--~~~~~~~~---~h~~~v~~l~~sp~g~  207 (345)
T 3fm0_A          154 K----------HVVWHPSQE-----LLASASYD-----DTVKLYREEEDD--WVCCATLE---GHESTVWSLAFDPSGQ  207 (345)
T ss_dssp             E----------EEEECSSSS-----CEEEEETT-----SCEEEEEEETTE--EEEEEEEC---CCSSCEEEEEECTTSS
T ss_pred             E----------EEEECCCCC-----EEEEEeCC-----CcEEEEEecCCC--EEEEEEec---CCCCceEEEEECCCCC
Confidence            6          999999987     89999999     999999988653  22333333   6888999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.2e-33  Score=218.40  Aligned_cols=190  Identities=13%  Similarity=0.199  Sum_probs=163.6

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.+..|.+.|.+++|+|++++|++|+.||+|+|||+.     +...+..+..|..+|.+++|+|+  +++|++++.|+.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~   78 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYE-----TQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-----TTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-----CCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCE
Confidence            45688999999999999999999999999999999998     56788889999999999999999  999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |++||+..+       +++..+.+|...|.+++|+|  ++.+|++++.|++|++||+++.     ..+...+..|...+.
T Consensus        79 i~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~-----~~~~~~~~~h~~~v~  144 (304)
T 2ynn_A           79 IRVFNYNTG-------EKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVM  144 (304)
T ss_dssp             EEEEETTTC-------CEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGT-----TEEEEEECCCCSCEE
T ss_pred             EEEEECCCC-------cEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCC-----cchhhhhcccCCcEE
Confidence            999999876       78889999999999999999  9999999999999999999863     355566777777776


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                                +++|+|...    .+|++|+.|     +.|++||+.........      ..+|...|..++|+|.
T Consensus       145 ----------~v~~~p~~~----~~l~sgs~D-----~~v~iwd~~~~~~~~~~------~~~~~~~v~~~~~~~~  195 (304)
T 2ynn_A          145 ----------CVAFNPKDP----STFASGCLD-----RTVKVWSLGQSTPNFTL------TTGQERGVNYVDYYPL  195 (304)
T ss_dssp             ----------EEEECTTCT----TEEEEEETT-----SEEEEEETTCSSCSEEE------ECCCTTCEEEEEECCS
T ss_pred             ----------EEEECCCCC----CEEEEEeCC-----CeEEEEECCCCCcccee------ccCCcCcEEEEEEEEc
Confidence                      999999542    189999999     99999999765433222      1246668999999884

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-32  Score=213.48  Aligned_cols=197  Identities=23%  Similarity=0.444  Sum_probs=163.1

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      .+|.+.|.+++|+|++++|++|+.|++|+||++...   ..+++..+.+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~---~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~s~D~~v~iw  132 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD---DFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKSVWVW  132 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC----EEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCC---CeEEEEEccCCCCCceEEEEeCC--CCEEEEEECCCeEEEE
Confidence            569999999999999999999999999999998743   45678889999999999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      |+....    ...++..+..|...|.+++|+|  ++.+|++++.|++|++||.+..    .+.+...+..|...|.    
T Consensus       133 d~~~~~----~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~----~~~~~~~~~~h~~~v~----  198 (345)
T 3fm0_A          133 EVDEED----EYECVSVLNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEED----DWVCCATLEGHESTVW----  198 (345)
T ss_dssp             EECTTS----CEEEEEEECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETT----EEEEEEEECCCSSCEE----
T ss_pred             ECCCCC----CeEEEEEecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCC----CEEEEEEecCCCCceE----
Confidence            997642    2356777888999999999999  9999999999999999999762    2345566777777776    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC-----------cceeEeeecCCCCCCceEEEEE
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR-----------WLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                            +++|+|++.     +|++|+.|     +.|+||+.......           +.....+.  ..|...|++++|
T Consensus       199 ------~l~~sp~g~-----~l~s~s~D-----~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~  260 (345)
T 3fm0_A          199 ------SLAFDPSGQ-----RLASCSDD-----RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAW  260 (345)
T ss_dssp             ------EEEECTTSS-----EEEEEETT-----SCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEE
T ss_pred             ------EEEECCCCC-----EEEEEeCC-----CeEEEeccccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEE
Confidence                  999999987     89999999     99999998543221           11222222  237889999999


Q ss_pred             ecCCC
Q 026295          235 ALNIG  239 (240)
Q Consensus       235 sp~~~  239 (240)
                      +|+++
T Consensus       261 ~~~~~  265 (345)
T 3fm0_A          261 CQLTG  265 (345)
T ss_dssp             CTTTC
T ss_pred             ecCCC
Confidence            99875

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-33  Score=222.94  Aligned_cols=186  Identities=17%  Similarity=0.212  Sum_probs=164.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+.     +.+....+.+|...|.+++|+|+  +.+|++++.|++|+
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~-----~~~~~~~l~~h~~~V~~v~~~~~--~~~l~sgs~D~~i~  175 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQDISFDHS--GKLLASCSADMTIK  175 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-----TCCCCEEECCCSSCEEEEEECTT--SSEEEEEETTSCCC
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCcEEEEEeccCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            366899999999999999999999999999999998     55677888999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||+...       +++..+.+|...|.+++|+|  ++.+|++++.|++|++||+++      ..+...+..|...+.  
T Consensus       176 iwd~~~~-------~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~------~~~~~~~~~h~~~v~--  238 (410)
T 1vyh_C          176 LWDFQGF-------ECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQT------GYCVKTFTGHREWVR--  238 (410)
T ss_dssp             EEETTSS-------CEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEE--
T ss_pred             EEeCCCC-------ceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCC------CcEEEEEeCCCccEE--
Confidence            9999765       78889999999999999999  999999999999999999987      566777888877776  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                              ++.|+|++.     +|++|+.|     +.|++||+.+...    ...+.   +|...|++++|+|+.
T Consensus       239 --------~~~~~~~g~-----~l~s~s~D-----~~v~vwd~~~~~~----~~~~~---~h~~~v~~~~~~~~~  288 (410)
T 1vyh_C          239 --------MVRPNQDGT-----LIASCSND-----QTVRVWVVATKEC----KAELR---EHRHVVECISWAPES  288 (410)
T ss_dssp             --------EEEECTTSS-----EEEEEETT-----SCEEEEETTTCCE----EEEEC---CCSSCEEEEEECCSC
T ss_pred             --------EEEECCCCC-----EEEEEcCC-----CeEEEEECCCCce----eeEec---CCCceEEEEEEcCcc
Confidence                    899999987     89999999     9999999977542    23333   577799999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-32  Score=212.17  Aligned_cols=200  Identities=19%  Similarity=0.289  Sum_probs=155.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-ee-cCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KV-HAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +.+.+|.+.|.+++|+++  +||+|+.|++|+||++...   ....+..+ .+ |...|.+++|+|+  +.+|++++.|+
T Consensus         8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~---~~~~~~~~~~~~h~~~v~~v~~sp~--~~~las~s~D~   80 (330)
T 2hes_X            8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYD---DFTLIDVLDETAHKKAIRSVAWRPH--TSLLAAGSFDS   80 (330)
T ss_dssp             EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSS---CCEEEEEECTTCCCSCEEEEEECTT--SSEEEEEETTS
T ss_pred             eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCC---CeEEEEEEecCCccCCEEEEEECCC--CCEEEEEeCCC
Confidence            457889999999999987  9999999999999999743   23455555 34 9999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|++|++.........+.++..+.+|...|.+++|+|  ++.+|++++.|++|++||++...  ...+++..+..|...+
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp--~g~~las~s~D~~v~iwd~~~~~--~~~~~~~~~~~h~~~v  156 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWETDESG--EEYECISVLQEHSQDV  156 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC----CEEEEEECT--TSCEEEEEETTSCEEEEECCTTC--CCCEEEEEECCCSSCE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC--CCCEEEEEeCCCEEEEEeccCCC--CCeEEEEEeccCCCce
Confidence            9999998542111122367778889999999999999  99999999999999999995321  1245666677777777


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .          +++|+|++.     +|++|+.|     +.|+||+.....  +.....+.   +|...|++++|+|+.
T Consensus       157 ~----------~v~~~p~~~-----~l~s~s~D-----~~i~iW~~~~~~--~~~~~~~~---~h~~~v~~~~~~~~~  209 (330)
T 2hes_X          157 K----------HVIWHPSEA-----LLASSSYD-----DTVRIWKDYDDD--WECVAVLN---GHEGTVWSSDFDKTE  209 (330)
T ss_dssp             E----------EEEECSSSS-----EEEEEETT-----SCEEEEEEETTE--EEEEEEEC---CCSSCEEEEEECCSS
T ss_pred             E----------EEEECCCCC-----EEEEEcCC-----CeEEEEECCCCC--eeEEEEcc---CCCCcEEEEEecCCC
Confidence            6          999999987     89999999     999999987642  22333333   688899999999983

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=2e-32  Score=212.96  Aligned_cols=197  Identities=15%  Similarity=0.166  Sum_probs=163.1

Q ss_pred             chhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            3 KAVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ..+.+|.+.|++++|+|++ ++|++|+.|++|++|++.........++..+.+|...|.+++|+|+  +.+|++++.|++
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~d--g~~l~s~s~D~~   88 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD--GAYALSASWDKT   88 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSE
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCC--CCEEEEEeCCCE
Confidence            4578999999999999965 8999999999999999863322234567889999999999999999  999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |++||+..+       +++..+.+|...|.+++|+|  ++.+|++++.|++|++||++.       .....+..|...+.
T Consensus        89 v~~wd~~~~-------~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~  152 (319)
T 3frx_A           89 LRLWDVATG-------ETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVS  152 (319)
T ss_dssp             EEEEETTTT-------EEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEE
T ss_pred             EEEEECCCC-------CeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEE
Confidence            999999877       88899999999999999999  999999999999999999874       45566667776666


Q ss_pred             ccccccceeeeEEEeCCCCC-CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGE-NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~-~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                ++.|.|.... .+..+|++++.|     +.|++||+.+..    ....+.   +|...|++++|+|++.
T Consensus       153 ----------~~~~~~~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~----~~~~~~---~h~~~v~~~~~sp~g~  209 (319)
T 3frx_A          153 ----------QVRVVPNEKADDDSVTIISAGND-----KMVKAWNLNQFQ----IEADFI---GHNSNINTLTASPDGT  209 (319)
T ss_dssp             ----------EEEECCC------CCEEEEEETT-----SCEEEEETTTTE----EEEEEC---CCCSCEEEEEECTTSS
T ss_pred             ----------EEEEccCCCCCCCccEEEEEeCC-----CEEEEEECCcch----hheeec---CCCCcEEEEEEcCCCC
Confidence                      8999986431 123479999998     999999987643    233333   6888999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-32  Score=213.52  Aligned_cols=187  Identities=16%  Similarity=0.207  Sum_probs=161.0

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|...|.+++|+|++++|++|+.|++|+|||+.     +.+.+..+.+|...|.+++|+|+  +.+|++++.|+.|+
T Consensus        60 ~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~D~~i~  132 (319)
T 3frx_A           60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA-----TGETYQRFVGHKSDVMSVDIDKK--ASMIISGSRDKTIK  132 (319)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TTEEEEEEECCSSCEEEEEECTT--SCEEEEEETTSCEE
T ss_pred             EEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC-----CCCeeEEEccCCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            467899999999999999999999999999999998     66788899999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC----CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS----TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +||++.        .++..+.+|...|.++.|+|..    ++..+++++.|+.|++||+++      .+....+..|...
T Consensus       133 vwd~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~~~~h~~~  198 (319)
T 3frx_A          133 VWTIKG--------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ------FQIEADFIGHNSN  198 (319)
T ss_dssp             EEETTS--------CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT------TEEEEEECCCCSC
T ss_pred             EEECCC--------CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc------chhheeecCCCCc
Confidence            999964        6778888999999999998831    244799999999999999987      5666777777777


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +.          +++|+|++.     +|++|+.|     +.|+|||+.+..    ....+.    +...|.+++|+|++.
T Consensus       199 v~----------~~~~sp~g~-----~l~s~~~d-----g~i~iwd~~~~~----~~~~~~----~~~~v~~~~~sp~~~  250 (319)
T 3frx_A          199 IN----------TLTASPDGT-----LIASAGKD-----GEIMLWNLAAKK----AMYTLS----AQDEVFSLAFSPNRY  250 (319)
T ss_dssp             EE----------EEEECTTSS-----EEEEEETT-----CEEEEEETTTTE----EEEEEE----CCSCEEEEEECSSSS
T ss_pred             EE----------EEEEcCCCC-----EEEEEeCC-----CeEEEEECCCCc----EEEEec----CCCcEEEEEEcCCCC
Confidence            76          999999987     89999999     999999998754    233333    334899999999873

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=214.78  Aligned_cols=186  Identities=23%  Similarity=0.336  Sum_probs=163.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|...+.+++|+|++++|++|+.|+.|++|++.     ..+....+..|...|.+++|+|+  +++|++++.|+.|++
T Consensus       118 ~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-----~~~~~~~~~~~~~~v~~~~~spd--g~~lasg~~dg~i~i  190 (321)
T 3ow8_A          118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-----SGKKEYSLDTRGKFILSIAYSPD--GKYLASGAIDGIINI  190 (321)
T ss_dssp             EECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-----TCSEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEE
T ss_pred             EeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-----CCceeEEecCCCceEEEEEECCC--CCEEEEEcCCCeEEE
Confidence            55677789999999999999999999999999998     44566778888899999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||++.+       +++..+.+|...|.+++|+|  ++.+|++++.|++|++||++.      ..+...+..|...+.   
T Consensus       191 wd~~~~-------~~~~~~~~h~~~v~~l~~sp--d~~~l~s~s~dg~i~iwd~~~------~~~~~~~~~h~~~v~---  252 (321)
T 3ow8_A          191 FDIATG-------KLLHTLEGHAMPIRSLTFSP--DSQLLVTASDDGYIKIYDVQH------ANLAGTLSGHASWVL---  252 (321)
T ss_dssp             EETTTT-------EEEEEECCCSSCCCEEEECT--TSCEEEEECTTSCEEEEETTT------CCEEEEECCCSSCEE---
T ss_pred             EECCCC-------cEEEEEcccCCceeEEEEcC--CCCEEEEEcCCCeEEEEECCC------cceeEEEcCCCCceE---
Confidence            999876       88889999999999999999  999999999999999999987      566677777877776   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             +++|+|++.     +|++|+.|     +.|+|||+.+..    ....+.   +|...|++++|+|++.
T Consensus       253 -------~~~~sp~~~-----~l~s~s~D-----~~v~iwd~~~~~----~~~~~~---~h~~~v~~v~~s~~g~  303 (321)
T 3ow8_A          253 -------NVAFCPDDT-----HFVSSSSD-----KSVKVWDVGTRT----CVHTFF---DHQDQVWGVKYNGNGS  303 (321)
T ss_dssp             -------EEEECTTSS-----EEEEEETT-----SCEEEEETTTTE----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             -------EEEECCCCC-----EEEEEeCC-----CcEEEEeCCCCE----EEEEEc---CCCCcEEEEEECCCCC
Confidence                   999999987     89999999     999999997653    333333   5778999999999874

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.5e-33  Score=215.83  Aligned_cols=205  Identities=24%  Similarity=0.411  Sum_probs=154.6

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+...   ...++..+.+|.+.|.+++|+|+..+.+|++++.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~---~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG---GQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT---EEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC---CcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEE
Confidence            35689999999999999999999999999999999732   334677889999999999998642378999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||++.+     .+.....+.+|...|.+++|+|..++.+|++++.|++|++||++...   .+.....+..|...+.  
T Consensus        85 iWd~~~~-----~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~---~~~~~~~~~~h~~~v~--  154 (316)
T 3bg1_A           85 IWREENG-----TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEG---QWEVKKINNAHTIGCN--  154 (316)
T ss_dssp             EECCSSS-----CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSS---CEEECCBTTSSSSCBC--
T ss_pred             EEECCCC-----cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC---CcceeeeeccccCCcc--
Confidence            9999754     23566778889999999999994338899999999999999998631   1222333445554444  


Q ss_pred             ccccceeeeEEEeCCCCC------------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          164 RKASCISASISWNPQKGE------------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~------------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                              +++|+|+...            ....+|++|+.|     +.|+|||+.... .+.....   ..+|..+|++
T Consensus       155 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D-----~~v~lWd~~~~~-~~~~~~~---l~~h~~~V~~  217 (316)
T 3bg1_A          155 --------AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCD-----NLIKLWKEEEDG-QWKEEQK---LEAHSDWVRD  217 (316)
T ss_dssp             --------CCEECCCCCC------CCSCCCCCCCBEECCBTT-----SBCCEEEECTTS-CEEEEEC---CBCCSSCEEE
T ss_pred             --------eEEEccccCCccccccccccCccccceEEEecCC-----CeEEEEEeCCCC-ccceeee---cccCCCceEE
Confidence                    8999997421            012389999999     999999996432 2223333   3468889999


Q ss_pred             EEEecCC
Q 026295          232 VAWALNI  238 (240)
Q Consensus       232 v~~sp~~  238 (240)
                      ++|+|++
T Consensus       218 v~~sp~~  224 (316)
T 3bg1_A          218 VAWAPSI  224 (316)
T ss_dssp             EECCCCS
T ss_pred             EEecCCC
Confidence            9999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-32  Score=212.35  Aligned_cols=187  Identities=13%  Similarity=0.174  Sum_probs=165.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|...|.+++|++++.++++++.|++|+|||+.     +.+.+..+..|...+.+++|+|+  +++|++++.|+.|+
T Consensus        75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~-----~~~~~~~~~~~~~~~~~~~~spd--g~~l~~g~~dg~v~  147 (321)
T 3ow8_A           75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE-----NGKQIKSIDAGPVDAWTLAFSPD--SQYLATGTHVGKVN  147 (321)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-----TTEEEEEEECCTTCCCCEEECTT--SSEEEEECTTSEEE
T ss_pred             eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC-----CCCEEEEEeCCCccEEEEEECCC--CCEEEEEcCCCcEE
Confidence            467899999999999999999999999999999998     56788888888999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +|++..+       +....+..+...|.+++|+|  ++.+|++++.||.|++||+++      .+++..+..|...+.  
T Consensus       148 i~~~~~~-------~~~~~~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~------~~~~~~~~~h~~~v~--  210 (321)
T 3ow8_A          148 IFGVESG-------KKEYSLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIAT------GKLLHTLEGHAMPIR--  210 (321)
T ss_dssp             EEETTTC-------SEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCCC--
T ss_pred             EEEcCCC-------ceeEEecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCC------CcEEEEEcccCCcee--
Confidence            9999776       67777888888999999999  999999999999999999987      577777877777776  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              +++|+|++.     +|++|+.|     +.|+|||+++..    ....+.   +|...|++++|+|++.
T Consensus       211 --------~l~~spd~~-----~l~s~s~d-----g~i~iwd~~~~~----~~~~~~---~h~~~v~~~~~sp~~~  261 (321)
T 3ow8_A          211 --------SLTFSPDSQ-----LLVTASDD-----GYIKIYDVQHAN----LAGTLS---GHASWVLNVAFCPDDT  261 (321)
T ss_dssp             --------EEEECTTSC-----EEEEECTT-----SCEEEEETTTCC----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             --------EEEEcCCCC-----EEEEEcCC-----CeEEEEECCCcc----eeEEEc---CCCCceEEEEECCCCC
Confidence                    999999987     89999999     999999987653    233333   6888999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.3e-32  Score=208.75  Aligned_cols=191  Identities=13%  Similarity=0.142  Sum_probs=159.6

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.+.|.+++|+|++++|++|+.|++|++||+...    ..+...+.+|...|.+++|+|. .+.+|++++.|++|+
T Consensus        92 ~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~----~~~~~~~~~h~~~v~~v~~~p~-~~~~l~sgs~D~~v~  166 (304)
T 2ynn_A           92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN----WALEQTFEGHEHFVMCVAFNPK-DPSTFASGCLDRTVK  166 (304)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT----TEEEEEECCCCSCEEEEEECTT-CTTEEEEEETTSEEE
T ss_pred             EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC----cchhhhhcccCCcEEEEEECCC-CCCEEEEEeCCCeEE
Confidence            46789999999999999999999999999999999732    2556778899999999999984 178999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           84 LWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      +||+...       .+...+ ..+...+..+.|+|..++.+|++++.|++|++||+++      .+++..+..|...+. 
T Consensus       167 iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~~~v~-  232 (304)
T 2ynn_A          167 VWSLGQS-------TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVS-  232 (304)
T ss_dssp             EEETTCS-------SCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEE-
T ss_pred             EEECCCC-------CccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCCCCEE-
Confidence            9999655       333333 3456789999998866788999999999999999987      577888888887777 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               +++|+|++.     +|++|+.|     +.|+|||..+..    ....+.   .|...+++++|+|+++
T Consensus       233 ---------~~~~~p~~~-----~l~s~s~D-----g~i~iWd~~~~~----~~~~~~---~~~~~~~~~~~~~~~~  283 (304)
T 2ynn_A          233 ---------FAVFHPTLP-----IIISGSED-----GTLKIWNSSTYK----VEKTLN---VGLERSWCIATHPTGR  283 (304)
T ss_dssp             ---------EEEECSSSS-----EEEEEETT-----SCEEEEETTTCC----EEEEEC---CSSSSEEEEEECTTCG
T ss_pred             ---------EEEECCCCC-----EEEEEcCC-----CeEEEEECCCCc----eeeecc---CCCccEEEEEECCCCC
Confidence                     899999987     89999999     999999987654    333444   4666999999999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-31  Score=207.81  Aligned_cols=200  Identities=23%  Similarity=0.380  Sum_probs=155.7

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC--CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      |.+.|.+++|+|++++|++|+.|++|+||++.....  ...+++..+.+|...|.+++|+|+  +++|++++.|++|++|
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~--g~~las~s~D~~v~iw  134 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSND--GYYLATCSRDKSVWIW  134 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTT--SCEEEEEETTSCEEEE
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCC--CCEEEEEeCCCEEEEE
Confidence            889999999999999999999999999999853210  134567788899999999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      |+....   ..++++..+.+|...|.+++|+|  ++.+|++++.|++|++||....    .++++..+..|...+.    
T Consensus       135 d~~~~~---~~~~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~----~~~~~~~~~~h~~~v~----  201 (330)
T 2hes_X          135 ETDESG---EEYECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDD----DWECVAVLNGHEGTVW----  201 (330)
T ss_dssp             ECCTTC---CCCEEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETT----EEEEEEEECCCSSCEE----
T ss_pred             eccCCC---CCeEEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCC----CeeEEEEccCCCCcEE----
Confidence            995321   22367788889999999999999  9999999999999999998752    2466777778877776    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC----cceeEeeecCCCCCCceEEEEEecCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR----WLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~----~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                            +++|+|+..   ..+|++|+.|     ++|+||++......    +.....+  ...|...|++++|+|++
T Consensus       202 ------~~~~~~~~~---~~~l~s~s~D-----~~v~iw~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~  262 (330)
T 2hes_X          202 ------SSDFDKTEG---VFRLCSGSDD-----STVRVWKYMGDDEDDQQEWVCEAIL--PDVHKRQVYNVAWGFNG  262 (330)
T ss_dssp             ------EEEECCSSS---SCEEEEEETT-----SCEEEEEEEEECTTSCEEEEEEEEC--CSCCSSCEEEEEECTTS
T ss_pred             ------EEEecCCCC---eeEEEEEeCC-----CeEEEEEecCCCccccceeEEeeec--ccccccceEEEEEcCCC
Confidence                  999999842   2279999999     99999999764321    1222222  22388899999999764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.2e-32  Score=210.19  Aligned_cols=188  Identities=19%  Similarity=0.260  Sum_probs=163.1

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|++++|+|++++|++|+.|+.|+||++.     +.+....+.+|...|.+++|+|+  +++|++++.|+.|+
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~i~   90 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-----DGKFEKTISGHKLGISDVAWSSD--SNLLVSASDDKTLK   90 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TCCEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-----CcccchhhccCCCceEEEEEcCC--CCEEEEECCCCEEE
Confidence            467899999999999999999999999999999997     44667788899999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||+..+       +++..+..|...|.+++|+|  ++.+|++++.|++|++||+++      .+....+..|...+.  
T Consensus        91 vwd~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~------~~~~~~~~~~~~~v~--  153 (312)
T 4ery_A           91 IWDVSSG-------KCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKT------GKCLKTLPAHSDPVS--  153 (312)
T ss_dssp             EEETTTC-------CEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEE--
T ss_pred             EEECCCC-------cEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCC------CEEEEEecCCCCcEE--
Confidence            9999776       78888999999999999999  999999999999999999987      466667777766666  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              +++|+|++.     +|++++.|     +.|++||+.+....    ..+  ...+...+..++|+|++.
T Consensus       154 --------~~~~~~~~~-----~l~~~~~d-----~~i~~wd~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~  205 (312)
T 4ery_A          154 --------AVHFNRDGS-----LIVSSSYD-----GLCRIWDTASGQCL----KTL--IDDDNPPVSFVKFSPNGK  205 (312)
T ss_dssp             --------EEEECTTSS-----EEEEEETT-----SCEEEEETTTCCEE----EEE--CCSSCCCEEEEEECTTSS
T ss_pred             --------EEEEcCCCC-----EEEEEeCC-----CcEEEEECCCCcee----eEE--eccCCCceEEEEECCCCC
Confidence                    899999987     89999999     99999998765422    221  124566899999999874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.8e-32  Score=217.24  Aligned_cols=190  Identities=13%  Similarity=0.163  Sum_probs=165.7

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+..|...|.+++|+|++++|++|+.|++|++||+.     +..++..+.+|...|.++.|+|+  +.++++++.|+.|
T Consensus       186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-----~~~~~~~~~~h~~~v~~~~~~~~--g~~l~s~s~D~~v  258 (410)
T 1vyh_C          186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-----TGYCVKTFTGHREWVRMVRPNQD--GTLIASCSNDQTV  258 (410)
T ss_dssp             ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCE
T ss_pred             EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-----CCcEEEEEeCCCccEEEEEECCC--CCEEEEEcCCCeE
Confidence            3467899999999999999999999999999999998     56788889999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC------------------CCcEEEEEeCCCcEEEEEecCcccc
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS------------------TSLKLVAAYSDGHVKVYELLDPLIL  144 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------~~~~l~~~~~dg~v~iw~~~~~~~~  144 (240)
                      ++||+...       .+...+..|...|.+++|+|..                  .+.+|++++.|++|++||+++    
T Consensus       259 ~vwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~----  327 (410)
T 1vyh_C          259 RVWVVATK-------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST----  327 (410)
T ss_dssp             EEEETTTC-------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT----
T ss_pred             EEEECCCC-------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC----
Confidence            99999776       7788888999999999999821                  166899999999999999987    


Q ss_pred             cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCC
Q 026295          145 KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPED  224 (240)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~  224 (240)
                        ..+...+..|...+.          +++|+|++.     +|++|+.|     +.|++||+.+....    ..+.   +
T Consensus       328 --~~~~~~~~~h~~~v~----------~v~~~~~g~-----~l~s~s~D-----~~i~vwd~~~~~~~----~~~~---~  378 (410)
T 1vyh_C          328 --GMCLMTLVGHDNWVR----------GVLFHSGGK-----FILSCADD-----KTLRVWDYKNKRCM----KTLN---A  378 (410)
T ss_dssp             --TEEEEEEECCSSCEE----------EEEECSSSS-----CEEEEETT-----TEEEEECCTTSCCC----EEEE---C
T ss_pred             --CceEEEEECCCCcEE----------EEEEcCCCC-----EEEEEeCC-----CeEEEEECCCCceE----EEEc---C
Confidence              577778888877777          999999987     89999998     99999999765433    3333   5


Q ss_pred             CCCceEEEEEecCCC
Q 026295          225 RSDEVYAVAWALNIG  239 (240)
Q Consensus       225 h~~~v~~v~~sp~~~  239 (240)
                      |...|++++|+|++.
T Consensus       379 h~~~v~~l~~~~~~~  393 (410)
T 1vyh_C          379 HEHFVTSLDFHKTAP  393 (410)
T ss_dssp             CSSCEEEEEECSSSS
T ss_pred             CCCcEEEEEEcCCCC
Confidence            777999999999874

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-31  Score=211.25  Aligned_cols=190  Identities=17%  Similarity=0.247  Sum_probs=159.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|.+.|.+++|+|++++|++++.|++|++||+.     +.+++..+.+|...|.++.|+|...+.+|++++.|+.|++
T Consensus       150 ~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-----~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~  224 (354)
T 2pbi_B          150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-----SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV  224 (354)
T ss_dssp             EEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEE
T ss_pred             eeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-----CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEE
Confidence            55799999999999999999999999999999998     5678889999999999999988534789999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||++.+       +++..+..|...|.+++|+|  ++.+|++++.|++|++||++..      .....+..+.       
T Consensus       225 wd~~~~-------~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~~------~~~~~~~~~~-------  282 (354)
T 2pbi_B          225 WDMRSG-------QCVQAFETHESDVNSVRYYP--SGDAFASGSDDATCRLYDLRAD------REVAIYSKES-------  282 (354)
T ss_dssp             EETTTC-------CEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTT------EEEEEECCTT-------
T ss_pred             EECCCC-------cEEEEecCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEECCCC------cEEEEEcCCC-------
Confidence            999876       78888999999999999999  9999999999999999999873      3333332211       


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       ....+.+++|+|++.     +|++|+.|     +.|+|||+.++.    ....+.   +|...|++++|+||+.
T Consensus       283 -~~~~~~~~~~s~~g~-----~l~~g~~d-----~~i~vwd~~~~~----~~~~l~---~h~~~v~~l~~spdg~  339 (354)
T 2pbi_B          283 -IIFGASSVDFSLSGR-----LLFAGYND-----YTINVWDVLKGS----RVSILF---GHENRVSTLRVSPDGT  339 (354)
T ss_dssp             -CCSCEEEEEECTTSS-----EEEEEETT-----SCEEEEETTTCS----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             -cccceeEEEEeCCCC-----EEEEEECC-----CcEEEEECCCCc----eEEEEE---CCCCcEEEEEECCCCC
Confidence             111234899999987     89999998     999999987654    223333   6888999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-31  Score=210.10  Aligned_cols=187  Identities=14%  Similarity=0.221  Sum_probs=149.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      |+..|.+++|+|++ +|++|+.||+|+|||+..... .......+.+|.+.|++++|+|+  +++|++++.|++|++||+
T Consensus        81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~-~~~~~~~~~~H~~~V~~v~~spd--g~~l~sgs~d~~i~iwd~  156 (344)
T 4gqb_B           81 TEAGVADLTWVGER-GILVASDSGAVELWELDENET-LIVSKFCKYEHDDIVSTVSVLSS--GTQAVSGSKDICIKVWDL  156 (344)
T ss_dssp             ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSS-CEEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEEEEET
T ss_pred             cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc-eeEeeccccCCCCCEEEEEECCC--CCEEEEEeCCCeEEEEEC
Confidence            55689999999985 788999999999999974321 22233445689999999999999  999999999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCcccccceeEEeeeec--ccceeeccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN--AIDSVTMFR  164 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~--~~~~v~~~~  164 (240)
                      ..+       +++..+.+|...|.+++|+|  ++ .+|++++.|++|++||+++.      +....+..  +...+    
T Consensus       157 ~~~-------~~~~~~~~h~~~V~~~~~~~--~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~----  217 (344)
T 4gqb_B          157 AQQ-------VVLSSYRAHAAQVTCVAASP--HKDSVFLSCSEDNRILLWDTRCP------KPASQIGCSAPGYLP----  217 (344)
T ss_dssp             TTT-------EEEEEECCCSSCEEEEEECS--SCTTEEEEEETTSCEEEEETTSS------SCEEECC----CCCE----
T ss_pred             CCC-------cEEEEEcCcCCceEEEEecC--CCCCceeeecccccccccccccc------ceeeeeecceeeccc----
Confidence            877       89999999999999999998  66 46899999999999999873      44433322  22223    


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                            .+++|+|.+..    +|++|+.|     +.|+|||+++.+..    ..+.   +|...|++|+|+|++.
T Consensus       218 ------~~~~~~p~~~~----~l~sg~~d-----g~v~~wd~~~~~~~----~~~~---~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          218 ------TSLAWHPQQSE----VFVFGDEN-----GTVSLVDTKSTSCV----LSSA---VHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             ------EEEEECSSCTT----EEEEEETT-----SEEEEEESCC--CC----EEEE---CCSSCEEEEEECSSSS
T ss_pred             ------eeeeecCCCCc----ceEEeccC-----CcEEEEECCCCcEE----EEEc---CCCCCEEEEEEccCCC
Confidence                  38999997642    88999998     99999999876533    2334   5778999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.5e-31  Score=206.02  Aligned_cols=207  Identities=19%  Similarity=0.319  Sum_probs=159.5

Q ss_pred             hhcccccceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.+|.+.|.+++|+++  +++|++|+.|++|+|||+...   ....+..+.+|...|.+++|+|+..+.+|++++.|+.
T Consensus        48 ~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~---~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~  124 (297)
T 2pm7_B           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG---RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK  124 (297)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS---CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             EEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC---ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence            46789999999999864  899999999999999999743   2234556778999999999998634689999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-----------CCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-----------TSLKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      |++||++....     .....+..|...|.+++|+|..           ++.+|++++.|++|++||++....  .+.+.
T Consensus       125 v~~wd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~--~~~~~  197 (297)
T 2pm7_B          125 VSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLE  197 (297)
T ss_dssp             EEEEEBCSSSC-----BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT--EEEEE
T ss_pred             EEEEEecCCCc-----eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc--eEEEE
Confidence            99999975421     1235567888999999999821           156899999999999999986321  13455


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      ..+..|...|.          +++|+|++.  .+.+|++++.|     ++|+||+++.....+.. ..+ ...+|...|+
T Consensus       198 ~~l~~H~~~V~----------~v~~sp~~~--~~~~las~s~D-----~~v~iWd~~~~~~~~~~-~~~-~~~~~~~~v~  258 (297)
T 2pm7_B          198 STLEGHSDWVR----------DVAWSPTVL--LRSYMASVSQD-----RTCIIWTQDNEQGPWKK-TLL-KEEKFPDVLW  258 (297)
T ss_dssp             EEECCCSSCEE----------EEEECCCCS--SSEEEEEEETT-----SCEEEEEESSTTSCCEE-EES-SSSCCSSCEE
T ss_pred             EEecCCCCceE----------EEEECCCCC--CceEEEEEECC-----CcEEEEEeCCCCCccce-eee-ecccCCCcEE
Confidence            67777877777          999999851  12389999999     99999999875433322 111 1235778999


Q ss_pred             EEEEecCCC
Q 026295          231 AVAWALNIG  239 (240)
Q Consensus       231 ~v~~sp~~~  239 (240)
                      +++|+|++.
T Consensus       259 ~~~~s~~g~  267 (297)
T 2pm7_B          259 RASWSLSGN  267 (297)
T ss_dssp             EEEECSSSC
T ss_pred             EEEECCCCC
Confidence            999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=4.3e-31  Score=206.16  Aligned_cols=229  Identities=22%  Similarity=0.429  Sum_probs=166.3

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+-+.+|.+.|++++|+|++++|++|+.||.|+||++.... ...+....+.+|...|.+++|+|..++.+|++++.|+.
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-SNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-CcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCe
Confidence            34567899999999999999999999999999999997431 13467788889999999999999211899999999999


Q ss_pred             EEEEEeeeccCC--CcccEEEEEeeeccccEEeEEEeecCC--CcEEEEEeCCCcEEEEEecCcccccceeEEeeeec--
Q 026295           82 LLLWEEIVEDAQ--PLQWKLCKSFESTSTQVLDVQFGVSST--SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN--  155 (240)
Q Consensus        82 v~iwd~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~--  155 (240)
                      |++||+..+...  ...++++..+..|...|.+++|+|  +  +.+|++++.||.|++||+++......+........  
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP--AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC--GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcC--CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            999999765321  234567888888999999999999  7  89999999999999999986543332221110000  


Q ss_pred             ---------------------------------------cc---ceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          156 ---------------------------------------AI---DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       156 ---------------------------------------~~---~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                                                             ..   ..+.....+...+.+++|+|++.. ...+|++|+.|
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~-~~~~l~s~~~d  239 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR-WYQLIATGCKD  239 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC-SSEEEEEEETT
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC-cceEEEEEcCC
Confidence                                                   00   001112223335569999999720 00289999999


Q ss_pred             CCCCCCeEEEEEeecCCCCcc---------------------------------------eeEeeecCCCCCCceEEEEE
Q 026295          194 DTPQLNSSKVWEFDEAHNRWL---------------------------------------PVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       194 d~~~~~~i~iw~~~~~~~~~~---------------------------------------~~~~~~~~~~h~~~v~~v~~  234 (240)
                           +.|++||+........                                       ....+....+|...|++++|
T Consensus       240 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  314 (351)
T 3f3f_A          240 -----GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW  314 (351)
T ss_dssp             -----SCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred             -----CeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence                 9999999987422110                                       11223334468889999999


Q ss_pred             ecCCC
Q 026295          235 ALNIG  239 (240)
Q Consensus       235 sp~~~  239 (240)
                      +|++.
T Consensus       315 s~~~~  319 (351)
T 3f3f_A          315 NLTGT  319 (351)
T ss_dssp             CSSSC
T ss_pred             cCCCC
Confidence            99974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.7e-31  Score=208.27  Aligned_cols=191  Identities=17%  Similarity=0.259  Sum_probs=163.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+.+|.+.|.+++|+|++++|++|+.||+|+|||+.     +.+.+..+..|...|.+++|+|+  +.++++++.|+.|
T Consensus        49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-----~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~d~~v  121 (340)
T 1got_B           49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-----TCCEEEEEECSSSCEEEEEECTT--SSEEEEEETTCEE
T ss_pred             eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-----CCCcceEeecCCccEEEEEECCC--CCEEEEEeCCCeE
Confidence            3477899999999999999999999999999999998     55677888899999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++|++....   ........+.+|...|.++.|++  ++. +++++.|++|++||+++      .+....+..|...+. 
T Consensus       122 ~iw~~~~~~---~~~~~~~~~~~h~~~v~~~~~~~--~~~-l~s~s~d~~i~~wd~~~------~~~~~~~~~h~~~v~-  188 (340)
T 1got_B          122 SIYNLKTRE---GNVRVSRELAGHTGYLSCCRFLD--DNQ-IVTSSGDTTCALWDIET------GQQTTTFTGHTGDVM-  188 (340)
T ss_dssp             EEEETTTCS---BSCEEEEEEECCSSCEEEEEEEE--TTE-EEEEETTSCEEEEETTT------TEEEEEECCCSSCEE-
T ss_pred             EEEECccCC---CcceeEEEecCCCccEEEEEECC--CCc-EEEEECCCcEEEEECCC------CcEEEEEcCCCCceE-
Confidence            999986542   12256677888999999999998  766 89999999999999987      567777777877776 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               +++|+|++.     +|++|+.|     +.|++||++++.    ....+.   +|...|++++|+|++.
T Consensus       189 ---------~~~~~~~~~-----~l~sg~~d-----~~v~~wd~~~~~----~~~~~~---~h~~~v~~v~~~p~~~  239 (340)
T 1got_B          189 ---------SLSLAPDTR-----LFVSGACD-----ASAKLWDVREGM----CRQTFT---GHESDINAICFFPNGN  239 (340)
T ss_dssp             ---------EEEECTTSS-----EEEEEETT-----SCEEEEETTTCS----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             ---------EEEECCCCC-----EEEEEeCC-----CcEEEEECCCCe----eEEEEc---CCcCCEEEEEEcCCCC
Confidence                     999999987     89999999     999999997654    223333   5777999999999874

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-31  Score=208.91  Aligned_cols=205  Identities=27%  Similarity=0.427  Sum_probs=165.6

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.+.+|.+.|++++|+|++++|++|+.||.|+||++...   +.+.+..+.+|...|.+++|+++..+.+|++++.|+.
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCC---cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            4568899999999999999999999999999999999743   5677888999999999999987644789999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCC--CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST--SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      |++||+..+     .+..+..+..|...|.+++|+|  +  +.+|++++.|+.|++||++....    .....+..+...
T Consensus        81 v~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~~  149 (379)
T 3jrp_A           81 VLIWKEENG-----RWSQIAVHAVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIG  149 (379)
T ss_dssp             EEEEEEETT-----EEEEEEEECCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEECCTTC
T ss_pred             EEEEEcCCC-----ceeEeeeecCCCcceEEEEeCC--CCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecCCCCc
Confidence            999999875     1237777888999999999999  7  88999999999999999986321    222344556555


Q ss_pred             eeccccccceeeeEEEeCCCCC--------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          160 VTMFRKASCISASISWNPQKGE--------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~--------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                      +.          +++|+|....        .++.+|++++.|     +.|++||+++....+.....+.   +|...|++
T Consensus       150 v~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~---~h~~~v~~  211 (379)
T 3jrp_A          150 VN----------SASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLE---GHSDWVRD  211 (379)
T ss_dssp             EE----------EEEECCCC----------CTTCEEEEEETT-----SCEEEEEEETTTTEEEEEEEEC---CCSSCEEE
T ss_pred             eE----------EEEEcCccccccccccCCCCCCEEEEEeCC-----CeEEEEEecCCCcceeeEEEEe---cccCcEeE
Confidence            55          9999994100        012289999999     9999999998765555555554   57779999


Q ss_pred             EEEecCC
Q 026295          232 VAWALNI  238 (240)
Q Consensus       232 v~~sp~~  238 (240)
                      ++|+|++
T Consensus       212 ~~~sp~~  218 (379)
T 3jrp_A          212 VAWSPTV  218 (379)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999993

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-32  Score=215.09  Aligned_cols=183  Identities=15%  Similarity=0.152  Sum_probs=152.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCCeEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDGSLLL   84 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~~v~i   84 (240)
                      .+|.+.|++++|+|++++|++|+.|+.|+|||+.     +.+++..+.+|...|.+++|+++  + .++++++.|+.|++
T Consensus       136 ~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-----~~~~~~~~~~h~~~v~~v~~s~~--~~~~~~s~~~dg~v~~  208 (357)
T 4g56_B          136 YEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-----QKAVLKSYNAHSSEVNCVAACPG--KDTIFLSCGEDGRILL  208 (357)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEECTT--CSSCEEEEETTSCEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-----CCcEEEEEcCCCCCEEEEEEccC--CCceeeeeccCCceEE
Confidence            4688999999999999999999999999999998     66888899999999999999998  6 47899999999999


Q ss_pred             EEeeeccCCCcccEEEEEe--eeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           85 WEEIVEDAQPLQWKLCKSF--ESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      ||++.+       ++...+  ..+...+.+++|+|  + +.+|++++.|+.|++||+++      .++...+..+...+.
T Consensus       209 wd~~~~-------~~~~~~~~~~~~~~v~~v~~sp--~~~~~la~g~~d~~i~~wd~~~------~~~~~~~~~~~~~v~  273 (357)
T 4g56_B          209 WDTRKP-------KPATRIDFCASDTIPTSVTWHP--EKDDTFACGDETGNVSLVNIKN------PDSAQTSAVHSQNIT  273 (357)
T ss_dssp             CCTTSS-------SCBCBCCCTTCCSCEEEEEECT--TSTTEEEEEESSSCEEEEESSC------GGGCEEECCCSSCEE
T ss_pred             EECCCC-------ceeeeeeeccccccccchhhhh--cccceEEEeecccceeEEECCC------CcEeEEEeccceeEE
Confidence            999765       333333  34567799999998  5 46789999999999999987      455566677777666


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                                +++|+|++..    +|++|+.|     ++|+|||+++++    ....+    +|.+.|++|+|+|.
T Consensus       274 ----------~l~~sp~~~~----~lasgs~D-----~~i~iwd~~~~~----~~~~~----~H~~~V~~vafsP~  322 (357)
T 4g56_B          274 ----------GLAYSYHSSP----FLASISED-----CTVAVLDADFSE----VFRDL----SHRDFVTGVAWSPL  322 (357)
T ss_dssp             ----------EEEECSSSSC----CEEEEETT-----SCEEEECTTSCE----EEEEC----CCSSCEEEEEECSS
T ss_pred             ----------EEEEcCCCCC----EEEEEeCC-----CEEEEEECCCCc----EeEEC----CCCCCEEEEEEeCC
Confidence                      9999998742    79999999     999999987653    22222    58889999999994

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.8e-31  Score=208.24  Aligned_cols=188  Identities=15%  Similarity=0.193  Sum_probs=157.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.+.|.+++|++++. |++++.|++|++||+.     +.+++..+.+|.+.|.+++|+|+  +.++++++.|+.|+
T Consensus       138 ~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~sg~~d~~v~  209 (340)
T 1got_B          138 ELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-----TGQQTTTFTGHTGDVMSLSLAPD--TRLFVSGACDASAK  209 (340)
T ss_dssp             EEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred             EecCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-----CCcEEEEEcCCCCceEEEEECCC--CCEEEEEeCCCcEE
Confidence            3567999999999998775 8899999999999998     56788889999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||++.+       .+...+..|...|.+++|+|  ++.+|++++.||+|++||++.      .+....+....      
T Consensus       210 ~wd~~~~-------~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~------~~~~~~~~~~~------  268 (340)
T 1got_B          210 LWDVREG-------MCRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRA------DQELMTYSHDN------  268 (340)
T ss_dssp             EEETTTC-------SEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT------TEEEEEECCTT------
T ss_pred             EEECCCC-------eeEEEEcCCcCCEEEEEEcC--CCCEEEEEcCCCcEEEEECCC------CcEEEEEccCC------
Confidence            9999776       78888999999999999999  999999999999999999987      33333332111      


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                        ..+.+.+++|+|++.     +|++|+.|     +.|++||+.+..    ....+.   +|..+|++++|+||+.
T Consensus       269 --~~~~v~~~~~s~~g~-----~l~~g~~d-----~~i~vwd~~~~~----~~~~~~---~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          269 --IICGITSVSFSKSGR-----LLLAGYDD-----FNCNVWDALKAD----RAGVLA---GHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             --CCSCEEEEEECTTSS-----EEEEEETT-----SEEEEEETTTCC----EEEEEE---CCSSCEEEEEECTTSS
T ss_pred             --cccceEEEEECCCCC-----EEEEECCC-----CeEEEEEcccCc----EeeEee---cCCCcEEEEEEcCCCC
Confidence              122344899999987     89999998     999999987643    233344   5778999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.1e-31  Score=209.12  Aligned_cols=197  Identities=17%  Similarity=0.280  Sum_probs=159.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC-----------------------------c--------
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS-----------------------------S--------   45 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~-----------------------------~--------   45 (240)
                      +.+.+|.+.|++++|+|++++|++|+.|++|+|||.......                             .        
T Consensus        58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            347789999999999999999999999999999997532100                             0        


Q ss_pred             ------EEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC
Q 026295           46 ------FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS  119 (240)
Q Consensus        46 ------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  119 (240)
                            ......+..|...|.++.|+|+  +..|++++.|++|++||+..+       +++..+.+|...|.+++|+|..
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~  208 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESG-------QLLQSFHGHGADVLCLDLAPSE  208 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECCCS
T ss_pred             cccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCC-------eEEEEEcCCCCCeEEEEEEeCC
Confidence                  0011234568888999999998  889999999999999999776       7888999999999999998865


Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN  199 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~  199 (240)
                      ++.+|++++.||+|++||+++      .++...+..|...+.          +++|+|++.     +|++|+.|     +
T Consensus       209 ~g~~l~sgs~Dg~v~~wd~~~------~~~~~~~~~h~~~v~----------~v~~~p~~~-----~l~s~s~D-----~  262 (354)
T 2pbi_B          209 TGNTFVSGGCDKKAMVWDMRS------GQCVQAFETHESDVN----------SVRYYPSGD-----AFASGSDD-----A  262 (354)
T ss_dssp             SCCEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEE----------EEEECTTSS-----EEEEEETT-----S
T ss_pred             CCCEEEEEeCCCeEEEEECCC------CcEEEEecCCCCCeE----------EEEEeCCCC-----EEEEEeCC-----C
Confidence            678999999999999999987      566777777777776          999999987     89999999     9


Q ss_pred             eEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          200 SSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       200 ~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .|++||++....    ...+. ...+...+++++|+|++.
T Consensus       263 ~v~lwd~~~~~~----~~~~~-~~~~~~~~~~~~~s~~g~  297 (354)
T 2pbi_B          263 TCRLYDLRADRE----VAIYS-KESIIFGASSVDFSLSGR  297 (354)
T ss_dssp             CEEEEETTTTEE----EEEEC-CTTCCSCEEEEEECTTSS
T ss_pred             eEEEEECCCCcE----EEEEc-CCCcccceeEEEEeCCCC
Confidence            999999876432    12222 223445799999999874

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-30  Score=203.89  Aligned_cols=196  Identities=16%  Similarity=0.132  Sum_probs=157.1

Q ss_pred             chhcccccceEEEEE-----CC-CCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEE
Q 026295            3 KAVATLDKGTTSSSW-----NY-CGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVA   74 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~-----s~-~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   74 (240)
                      ..+.+|.+.|++++|     ++ ++++|++|+.|++|+|||+......  ...+...+.+|...|.+++|+|+  +.+++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~--~~~l~   92 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE--NCFAI   92 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS--TTEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC--CCEEE
Confidence            357889999999999     76 8999999999999999998643211  24567788899999999999999  99999


Q ss_pred             EEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-
Q 026295           75 CICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-  153 (240)
Q Consensus        75 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-  153 (240)
                      +++.|++|++||++.+       +.+..+.+|...|.+++|+|  ++.+|++++.|++|++||+..       .....+ 
T Consensus        93 s~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-------~~~~~~~  156 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTG-------TTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-------ECKFSSA  156 (343)
T ss_dssp             EEETTSEEEEEETTSS-------CEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-------CEEEECC
T ss_pred             EEcCCCcEEEEECCCC-------cEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-------Cceeeee
Confidence            9999999999999876       78888999999999999999  999999999999999999874       111111 


Q ss_pred             --ecccceeeccccccceeeeEEEeCCCCC-----CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCC
Q 026295          154 --QNAIDSVTMFRKASCISASISWNPQKGE-----NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRS  226 (240)
Q Consensus       154 --~~~~~~v~~~~~~~~~~~~v~~~p~~~~-----~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~  226 (240)
                        ..|...+.          +++|+|.+..     +...+|++++.|     +.|++||...     .....+.   +|.
T Consensus       157 ~~~~~~~~v~----------~~~~~~~~~~~~~~~~~~~~l~s~~~d-----~~i~iwd~~~-----~~~~~~~---~h~  213 (343)
T 2xzm_R          157 EKENHSDWVS----------CVRYSPIMKSANKVQPFAPYFASVGWD-----GRLKVWNTNF-----QIRYTFK---AHE  213 (343)
T ss_dssp             TTTSCSSCEE----------EEEECCCCCSCSCCCSSCCEEEEEETT-----SEEEEEETTT-----EEEEEEE---CCS
T ss_pred             cccCCCceee----------eeeeccccccccccCCCCCEEEEEcCC-----CEEEEEcCCC-----ceeEEEc---Ccc
Confidence              13444444          8999998631     112389999999     9999999321     2233333   577


Q ss_pred             CceEEEEEecCCC
Q 026295          227 DEVYAVAWALNIG  239 (240)
Q Consensus       227 ~~v~~v~~sp~~~  239 (240)
                      ..|++++|+||+.
T Consensus       214 ~~v~~~~~s~~g~  226 (343)
T 2xzm_R          214 SNVNHLSISPNGK  226 (343)
T ss_dssp             SCEEEEEECTTSS
T ss_pred             ccceEEEECCCCC
Confidence            7999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.6e-31  Score=222.62  Aligned_cols=199  Identities=16%  Similarity=0.194  Sum_probs=152.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcE-------------------------------------
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSF-------------------------------------   46 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~-------------------------------------   46 (240)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+........                                     
T Consensus        54 ~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~  133 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL  133 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred             EecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEE
Confidence            4678999999999999999999999999999999853210000                                     


Q ss_pred             ----EEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC
Q 026295           47 ----TCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS  121 (240)
Q Consensus        47 ----~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  121 (240)
                          .....+.+|...|.+++|+|+  +. .|++++.|++|++||....       ++...+.+|...|.+++|+|  ++
T Consensus       134 wd~~~~~~~l~gh~~~v~~v~f~p~--~~~~l~s~s~D~~v~lwd~~~~-------~~~~~l~~H~~~V~~v~fsp--dg  202 (611)
T 1nr0_A          134 FDTGTSNGNLTGQARAMNSVDFKPS--RPFRIISGSDDNTVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNP--DG  202 (611)
T ss_dssp             TTTCCBCBCCCCCSSCEEEEEECSS--SSCEEEEEETTSCEEEEETTTB-------EEEEEECCCSSCEEEEEECT--TS
T ss_pred             eeCCCCcceecCCCCCceEEEECCC--CCeEEEEEeCCCeEEEEECCCC-------eEeeeeccccCceEEEEECC--CC
Confidence                001123467777888888877  65 5889999999999997654       78888999999999999999  99


Q ss_pred             cEEEEEeCCCcEEEEEecCcccccceeEEeeee-------cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCC
Q 026295          122 LKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ-------NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSD  194 (240)
Q Consensus       122 ~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd  194 (240)
                      .+|++++.|++|++||+.+      .+....+.       .|...+.          +++|+|++.     +|++++.| 
T Consensus       203 ~~las~s~D~~i~lwd~~~------g~~~~~~~~~~~~~~~h~~~V~----------~v~~spdg~-----~l~s~s~D-  260 (611)
T 1nr0_A          203 SLFASTGGDGTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVF----------GLTWSPDGT-----KIASASAD-  260 (611)
T ss_dssp             SEEEEEETTSCEEEEETTT------CCEEEECBCTTSSSCSSSSCEE----------EEEECTTSS-----EEEEEETT-
T ss_pred             CEEEEEECCCcEEEEECCC------CcEeeeeccccccccccCCCEE----------EEEECCCCC-----EEEEEeCC-
Confidence            9999999999999999876      34444442       4555554          999999987     89999999 


Q ss_pred             CCCCCeEEEEEeecCCCCccee------------------------------------EeeecCCCCCCceEEEEEecCC
Q 026295          195 TPQLNSSKVWEFDEAHNRWLPV------------------------------------AELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       195 ~~~~~~i~iw~~~~~~~~~~~~------------------------------------~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                          ++|+|||+.+........                                    .......+|...|++++|+||+
T Consensus       261 ----~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg  336 (611)
T 1nr0_A          261 ----KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG  336 (611)
T ss_dssp             ----SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred             ----CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC
Confidence                999999987643211110                                    0111234688899999999987


Q ss_pred             C
Q 026295          239 G  239 (240)
Q Consensus       239 ~  239 (240)
                      .
T Consensus       337 ~  337 (611)
T 1nr0_A          337 K  337 (611)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.7e-30  Score=203.90  Aligned_cols=184  Identities=16%  Similarity=0.188  Sum_probs=152.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|...|.+++|+|++.+|++|+.|++|+|||+.     +.+.+..+.+|...|.+++|+|+  +.+|++++.|+.|+
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~-----~~~~~~~~~~h~~~v~~v~~sp~--~~~l~s~~~d~~i~  143 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR-----TGTTYKRFVGHQSEVYSVAFSPD--NRQILSAGAEREIK  143 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETT-----SSCEEEEEECCCSCEEEEEECSS--TTEEEEEETTSCEE
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECC-----CCcEEEEEcCCCCcEEEEEECCC--CCEEEEEcCCCEEE
Confidence            367899999999999999999999999999999998     55678889999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCC----------cEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTS----------LKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~----------~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      +||+..        .......   .|...|.+++|+|  ++          .+|++++.|++|++||..       .+..
T Consensus       144 ~wd~~~--------~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-------~~~~  206 (343)
T 2xzm_R          144 LWNILG--------ECKFSSAEKENHSDWVSCVRYSP--IMKSANKVQPFAPYFASVGWDGRLKVWNTN-------FQIR  206 (343)
T ss_dssp             EEESSS--------CEEEECCTTTSCSSCEEEEEECC--CCCSCSCCCSSCCEEEEEETTSEEEEEETT-------TEEE
T ss_pred             EEeccC--------CceeeeecccCCCceeeeeeecc--ccccccccCCCCCEEEEEcCCCEEEEEcCC-------Ccee
Confidence            999974        2333332   6778899999998  55          689999999999999943       3555


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      ..+..|...+.          +++|+|++.     +|++|+.|     +.|+|||+.......   ..+.    +...|+
T Consensus       207 ~~~~~h~~~v~----------~~~~s~~g~-----~l~sgs~d-----g~v~iwd~~~~~~~~---~~~~----~~~~v~  259 (343)
T 2xzm_R          207 YTFKAHESNVN----------HLSISPNGK-----YIATGGKD-----KKLLIWDILNLTYPQ---REFD----AGSTIN  259 (343)
T ss_dssp             EEEECCSSCEE----------EEEECTTSS-----EEEEEETT-----CEEEEEESSCCSSCS---EEEE----CSSCEE
T ss_pred             EEEcCccccce----------EEEECCCCC-----EEEEEcCC-----CeEEEEECCCCcccc---eeec----CCCcEE
Confidence            66777777666          999999987     89999999     999999985433221   1221    344799


Q ss_pred             EEEEecCC
Q 026295          231 AVAWALNI  238 (240)
Q Consensus       231 ~v~~sp~~  238 (240)
                      +++|+|++
T Consensus       260 ~v~~sp~~  267 (343)
T 2xzm_R          260 QIAFNPKL  267 (343)
T ss_dssp             EEEECSSS
T ss_pred             EEEECCCC
Confidence            99999986

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=6.7e-32  Score=218.41  Aligned_cols=191  Identities=15%  Similarity=0.170  Sum_probs=151.1

Q ss_pred             hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ...|+..|+|++|+| ++++||+|+.||.|+|||+...   .......+.+|.+.|++|+|+|. .+.+|++++.|++|+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~---~~~~~~~~~gH~~~V~~l~f~p~-~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK---DKPTFIKGIGAGGSITGLKFNPL-NTNQFYASSMEGTTR  190 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC---SCCEEECCCSSSCCCCEEEECSS-CTTEEEEECSSSCEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC---CceeEEEccCCCCCEEEEEEeCC-CCCEEEEEeCCCEEE
Confidence            456888999999999 5679999999999999999743   23345566789999999999984 278999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +||++..        ....+.   .+...+.+++|+|  ++.+|++|+.||.|++||++.       +.+..+..|...|
T Consensus       191 iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~dg~i~~wd~~~-------~~~~~~~~h~~~v  253 (435)
T 4e54_B          191 LQDFKGN--------ILRVFASSDTINIWFCSLDVSA--SSRMVVTGDNVGNVILLNMDG-------KELWNLRMHKKKV  253 (435)
T ss_dssp             EEETTSC--------EEEEEECCSSCSCCCCCEEEET--TTTEEEEECSSSBEEEEESSS-------CBCCCSBCCSSCE
T ss_pred             EeeccCC--------ceeEEeccCCCCccEEEEEECC--CCCEEEEEeCCCcEeeeccCc-------ceeEEEecccceE
Confidence            9999753        223332   3345678899999  999999999999999999864       3445566676666


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          +++|+|++..    +|++|+.|     +.|+|||+++.......    ....+|...|++++|+||+.
T Consensus       254 ~----------~v~~~p~~~~----~~~s~s~d-----~~v~iwd~~~~~~~~~~----~~~~~h~~~v~~~~~spdg~  309 (435)
T 4e54_B          254 T----------HVALNPCCDW----FLATASVD-----QTVKIWDLRQVRGKASF----LYSLPHRHPVNAACFSPDGA  309 (435)
T ss_dssp             E----------EEEECTTCSS----EEEEEETT-----SBCCEEETTTCCSSSCC----SBCCBCSSCEEECCBCTTSS
T ss_pred             E----------eeeecCCCce----EEEEecCc-----ceeeEEecccccccceE----EEeeeccccccceeECCCCC
Confidence            6          9999998753    78899998     99999999876543322    12235888999999999974

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.7e-31  Score=206.33  Aligned_cols=206  Identities=20%  Similarity=0.388  Sum_probs=158.8

Q ss_pred             hhcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.+|.+.|.+++|++  ++++|++|+.|++|+|||+...   ....+..+.+|...|.+++|+|+..+.+|++++.|+.
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~  128 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG---TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA  128 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS---CCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSC
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC---cceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCC
Confidence            4678999999999986  4899999999999999999742   2345667789999999999999744789999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC---------------CCcEEEEEeCCCcEEEEEecCcccccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS---------------TSLKLVAAYSDGHVKVYELLDPLILKN  146 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------~~~~l~~~~~dg~v~iw~~~~~~~~~~  146 (240)
                      |++||++..    ..|.....+..|...|.+++|+|..               .+.+|++++.|++|++||++..   ..
T Consensus       129 i~lwd~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~---~~  201 (316)
T 3bg1_A          129 ISLLTYTGE----GQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED---GQ  201 (316)
T ss_dssp             EEEEEECSS----SCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT---SC
T ss_pred             EEEEecCCC----CCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC---Cc
Confidence            999999754    1234455666788899999999821               1468999999999999999642   12


Q ss_pred             eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC-CcceeEeeecCCCC
Q 026295          147 WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN-RWLPVAELALPEDR  225 (240)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~-~~~~~~~~~~~~~h  225 (240)
                      +.+...+..|...|.          +++|+|++. .+..+|++|+.|     ++|+||++.+... .+.. ..+.   +|
T Consensus       202 ~~~~~~l~~h~~~V~----------~v~~sp~~~-~~~~~las~s~D-----~~v~iw~~~~~~~~~~~~-~~~~---~~  261 (316)
T 3bg1_A          202 WKEEQKLEAHSDWVR----------DVAWAPSIG-LPTSTIASCSQD-----GRVFIWTCDDASSNTWSP-KLLH---KF  261 (316)
T ss_dssp             EEEEECCBCCSSCEE----------EEECCCCSS-CSCCEEEEEETT-----CEEEEEECSSTTCCCCBC-CEEE---EC
T ss_pred             cceeeecccCCCceE----------EEEecCCCC-CCCceEEEEcCC-----CeEEEEEccCccccchhh-hhhh---cC
Confidence            355667777877777          999999862 112389999999     9999999876321 1111 1222   36


Q ss_pred             CCceEEEEEecCCC
Q 026295          226 SDEVYAVAWALNIG  239 (240)
Q Consensus       226 ~~~v~~v~~sp~~~  239 (240)
                      ...|++++|+|++.
T Consensus       262 ~~~v~~v~~sp~g~  275 (316)
T 3bg1_A          262 NDVVWHVSWSITAN  275 (316)
T ss_dssp             SSCEEEEEECTTTC
T ss_pred             CCcEEEEEEcCCCC
Confidence            67999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=3.7e-31  Score=209.79  Aligned_cols=202  Identities=15%  Similarity=0.162  Sum_probs=154.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      ..+..|.+.|.+++|+|++++|++++.|+.|+|||+....  .......+..|...|.+++|+|+  +.+|++++.|+.|
T Consensus        49 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i  124 (377)
T 3dwl_C           49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--TWKQTLVLLRLNRAATFVRWSPN--EDKFAVGSGARVI  124 (377)
T ss_dssp             CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--------CCCCEEECCCCSSCEEEEECCTT--SSCCEEEESSSCE
T ss_pred             EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC--ceeeeeEecccCCceEEEEECCC--CCEEEEEecCCeE
Confidence            3467899999999999999999999999999999998321  12256667789999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc------------cceeE
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL------------KNWQL  149 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~------------~~~~~  149 (240)
                      ++||++...    .|.....+.. |...|.+++|+|  ++.+|++++.|++|++||+......            ...++
T Consensus       125 ~iwd~~~~~----~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  198 (377)
T 3dwl_C          125 SVCYFEQEN----DWWVSKHLKRPLRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTV  198 (377)
T ss_dssp             EECCC---------CCCCEEECSSCCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEE
T ss_pred             EEEEECCcc----cceeeeEeecccCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhh
Confidence            999998751    1224667777 899999999999  9999999999999999999632110            11344


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                      ...+ .|...+.          +++|+|++.     +|++++.|     +.|++||+.+..........+.   +|...|
T Consensus       199 ~~~~-~~~~~v~----------~~~~sp~~~-----~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~---~~~~~v  254 (377)
T 3dwl_C          199 CAEY-PSGGWVH----------AVGFSPSGN-----ALAYAGHD-----SSVTIAYPSAPEQPPRALITVK---LSQLPL  254 (377)
T ss_dssp             EECC-CCSSSEE----------EEEECTTSS-----CEEEEETT-----TEEC-CEECSTTSCEEECCCEE---CSSSCE
T ss_pred             hhcc-cCCceEE----------EEEECCCCC-----EEEEEeCC-----CcEEEEECCCCCCcceeeEeec---CCCCce
Confidence            4444 5555555          999999987     89999999     9999999998765322233333   577799


Q ss_pred             EEEEEecCC
Q 026295          230 YAVAWALNI  238 (240)
Q Consensus       230 ~~v~~sp~~  238 (240)
                      ++++|+|++
T Consensus       255 ~~~~~s~~~  263 (377)
T 3dwl_C          255 RSLLWANES  263 (377)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEcCCC
Confidence            999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=1.8e-31  Score=212.39  Aligned_cols=197  Identities=14%  Similarity=0.239  Sum_probs=156.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+.+|.+.|++++|+|++++|++|+.|++|+|||+.     +.+....+..|...|.+++|+|+  +++|++++.|+.+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~-----~~~~~~~~~~h~~~v~~~~~s~~--g~~las~~~d~~v  132 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNAL-----TSQKTHAIKLHCPWVMECAFAPN--GQSVACGGLDSAC  132 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETT-----TTEEEEEEECCCTTCCCCEECTT--SSEEEECCSSSCC
T ss_pred             ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCccceEEecCCCCEEEEEECCC--CCEEEEeeCCCcE
Confidence            3478899999999999999999999999999999998     56788889999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-----eccc
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-----QNAI  157 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-----~~~~  157 (240)
                      ++|++...............+.+|...|.++.|.|. .+..|++++.|++|++||+++      .+.+..+     ..|.
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~------~~~~~~~~~~~~~~h~  205 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQTCVLWDVTT------GQRISIFGSEFPSGHT  205 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSCEEEECTTT------CCEEEEECCCSSSSCC
T ss_pred             EEEECCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCcEEEEEcCC------CcEEEEeecccCCCCc
Confidence            999987532211122334567789999999999883 244699999999999999987      3444433     2333


Q ss_pred             ceeeccccccceeeeEEEeCC-CCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          158 DSVTMFRKASCISASISWNPQ-KGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~-~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      ..+.          +++|+|. +.     +|++|+.|     +.|++||++.....   ...+.   +|...|++++|+|
T Consensus       206 ~~v~----------~~~~~~~~~~-----~l~sgs~D-----~~v~~wd~~~~~~~---~~~~~---~h~~~v~~v~~~p  259 (380)
T 3iz6_a          206 ADVL----------SLSINSLNAN-----MFISGSCD-----TTVRLWDLRITSRA---VRTYH---GHEGDINSVKFFP  259 (380)
T ss_dssp             SCEE----------EEEECSSSCC-----EEEEEETT-----SCEEEEETTTTCCC---CEEEC---CCSSCCCEEEECT
T ss_pred             cCeE----------EEEeecCCCC-----EEEEEECC-----CeEEEEECCCCCcc---eEEEC---CcCCCeEEEEEec
Confidence            3443          8899874 44     89999999     99999998754322   22233   5888999999999


Q ss_pred             CCC
Q 026295          237 NIG  239 (240)
Q Consensus       237 ~~~  239 (240)
                      ++.
T Consensus       260 ~~~  262 (380)
T 3iz6_a          260 DGQ  262 (380)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1e-29  Score=196.73  Aligned_cols=122  Identities=21%  Similarity=0.333  Sum_probs=112.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|...|.+++|+|++++|++|+.|+.|++||+.     +.+++..+.+|...|.++.|+|+  +.+|++++.|+.|+
T Consensus        60 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~  132 (312)
T 4ery_A           60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-----SGKCLKTLKGHSNYVFCCNFNPQ--SNLIVSGSFDESVR  132 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSCEE
T ss_pred             hhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC-----CCcEEEEEcCCCCCEEEEEEcCC--CCEEEEEeCCCcEE
Confidence            466799999999999999999999999999999998     55678889999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      +||++.+       +++..+..|...|.+++|+|  ++.+|++++.||.|++||+++.
T Consensus       133 iwd~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~  181 (312)
T 4ery_A          133 IWDVKTG-------KCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASG  181 (312)
T ss_dssp             EEETTTC-------CEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTC
T ss_pred             EEECCCC-------EEEEEecCCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC
Confidence            9999776       77888888999999999999  9999999999999999999863

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=6.6e-30  Score=214.92  Aligned_cols=197  Identities=15%  Similarity=0.254  Sum_probs=157.3

Q ss_pred             hhcccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.+|.+.|++++|+|+++ +|++|+.|++|++||..     +.+++..+.+|...|.+++|+|+  +++|++++.|++|
T Consensus       142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~-----~~~~~~~l~~H~~~V~~v~fspd--g~~las~s~D~~i  214 (611)
T 1nr0_A          142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP-----PFKFKSTFGEHTKFVHSVRYNPD--GSLFASTGGDGTI  214 (611)
T ss_dssp             CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT-----TBEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCE
T ss_pred             eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECC-----CCeEeeeeccccCceEEEEECCC--CCEEEEEECCCcE
Confidence            4678999999999999987 69999999999999987     66788899999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEee-------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFE-------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      ++||+..+       +++..+.       +|...|.+++|+|  ++.+|++++.|++|++||+++.      ++...+..
T Consensus       215 ~lwd~~~g-------~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd~~~~------~~~~~~~~  279 (611)
T 1nr0_A          215 VLYNGVDG-------TKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWNVATL------KVEKTIPV  279 (611)
T ss_dssp             EEEETTTC-------CEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTT------EEEEEEEC
T ss_pred             EEEECCCC-------cEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEeCCCC------ceeeeecC
Confidence            99998765       6666663       6889999999999  9999999999999999999863      22222211


Q ss_pred             cc---------------------------------ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEE
Q 026295          156 AI---------------------------------DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSK  202 (240)
Q Consensus       156 ~~---------------------------------~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~  202 (240)
                      +.                                 ........+...+.+++|+|++.     +|++++.|     +.|+
T Consensus       280 ~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-----~l~s~s~D-----~~v~  349 (611)
T 1nr0_A          280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-----TLFSADAE-----GHIN  349 (611)
T ss_dssp             CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-----EEEEEETT-----SCEE
T ss_pred             CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-----EEEEEeCC-----CcEE
Confidence            00                                 00001112333456999999987     89999999     9999


Q ss_pred             EEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          203 VWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       203 iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +||+.++...    ..  ...+|...|.+++|+|++
T Consensus       350 ~Wd~~~~~~~----~~--~~~~h~~~v~~~~~s~~~  379 (611)
T 1nr0_A          350 SWDISTGISN----RV--FPDVHATMITGIKTTSKG  379 (611)
T ss_dssp             EEETTTCCEE----EC--SSCSCSSCEEEEEECTTS
T ss_pred             EEECCCCcee----ee--cccCCcceEEEEEECCCC
Confidence            9999875422    11  123688899999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=5.7e-30  Score=204.54  Aligned_cols=189  Identities=17%  Similarity=0.223  Sum_probs=148.9

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC------------------ccEEEEEEcCCC
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA------------------GAILKVVWVPPE   68 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~------------------~~v~~~~~~~~~   68 (240)
                      .|.+.|.+++|+|+|++||+|+ ++.++||++.     +++.+..+..|.                  ..|.+++|+|+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~-----~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~d-  134 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVS-----DGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-  134 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETT-----TCCEEEEECC-----------------CCCCBEEEEEECTT-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEec-----CCCEEEEecCccccccccccccccccCCCceeEEEEEECCC-
Confidence            5899999999999999999987 6899999997     344555554332                  24899999999 


Q ss_pred             CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee
Q 026295           69 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        69 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                       +.+|++++.|+.|++||+..+       +.+..+.+|...|.+++|+|  ++.+|++++.|++|++||+++      .+
T Consensus       135 -g~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~------~~  198 (393)
T 1erj_A          135 -GKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRT------GQ  198 (393)
T ss_dssp             -SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT------TE
T ss_pred             -CCEEEEEcCCCeEEEEECCCC-------cEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCC------Ce
Confidence             999999999999999999776       88888999999999999999  999999999999999999987      34


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD  227 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~  227 (240)
                      +...+.. ...+.          +++|+| ++.     +|++|+.|     +.|++||+.++..............+|..
T Consensus       199 ~~~~~~~-~~~v~----------~~~~~~~~~~-----~l~~~s~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~  257 (393)
T 1erj_A          199 CSLTLSI-EDGVT----------TVAVSPGDGK-----YIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKD  257 (393)
T ss_dssp             EEEEEEC-SSCEE----------EEEECSTTCC-----EEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSS
T ss_pred             eEEEEEc-CCCcE----------EEEEECCCCC-----EEEEEcCC-----CcEEEEECCCCcEEEeecccccCCCCCCC
Confidence            4444432 23333          899999 555     89999999     99999998775432222111122246888


Q ss_pred             ceEEEEEecCCC
Q 026295          228 EVYAVAWALNIG  239 (240)
Q Consensus       228 ~v~~v~~sp~~~  239 (240)
                      .|++++|+|++.
T Consensus       258 ~v~~v~~~~~g~  269 (393)
T 1erj_A          258 SVYSVVFTRDGQ  269 (393)
T ss_dssp             CEEEEEECTTSS
T ss_pred             CEEEEEECCCCC
Confidence            999999999974

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=2.7e-29  Score=196.07  Aligned_cols=195  Identities=15%  Similarity=0.179  Sum_probs=159.6

Q ss_pred             hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +|++|.+.|++++|+|+ +++|+||+.|++|+|||+.........+...+.+|...|.+++|+|+  +.+|++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~d--g~~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSD--GQFALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCC--CCEEEEEcccccc
Confidence            47889999999999997 68999999999999999975543355677888999999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++|+....       ........+...+..+.+++  ++.+|++++.|+.+++||+...     ......+..+...+. 
T Consensus       111 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~-----~~~~~~~~~~~~~v~-  175 (340)
T 4aow_A          111 RLWDLTTG-------TTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGV-----CKYTVQDESHSEWVS-  175 (340)
T ss_dssp             EEEETTTT-------EEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSC-----EEEEECSSSCSSCEE-
T ss_pred             eEEeeccc-------ceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCC-----ceEEEEeccccCccc-
Confidence            99999766       66677777778888899988  8999999999999999998752     233333445555555 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               .++|+++..   ..++++++.|     +.|++||+.+..    ....+.   +|..+|++++|+|++.
T Consensus       176 ---------~~~~~~~~~---~~~~~s~~~d-----~~i~i~d~~~~~----~~~~~~---~h~~~v~~~~~s~~~~  228 (340)
T 4aow_A          176 ---------CVRFSPNSS---NPIIVSCGWD-----KLVKVWNLANCK----LKTNHI---GHTGYLNTVTVSPDGS  228 (340)
T ss_dssp             ---------EEEECSCSS---SCEEEEEETT-----SCEEEEETTTTE----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             ---------ceEEccCCC---CcEEEEEcCC-----CEEEEEECCCCc----eeeEec---CCCCcEEEEEECCCCC
Confidence                     888988765   4478889988     999999987653    233333   5778999999999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=1.2e-29  Score=216.21  Aligned_cols=197  Identities=17%  Similarity=0.227  Sum_probs=159.0

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+..|.+.|++++|+|++ ++|++|+.|++|+||++.............+.+|...|.+++|+|+  +.+|++++.|+.|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~--g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSD--GQFALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTT--SSEEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCC--CCEEEEEeCCCcE
Confidence            477899999999999875 7999999999999999975432234566778899999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++||+..+       .....+.+|...|.+++|+|  ++.+|++++.|++|++||......   .........|...+. 
T Consensus       455 ~vwd~~~~-------~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~---~~~~~~~~~h~~~v~-  521 (694)
T 3dm0_A          455 RLWDLAAG-------VSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECK---YTISEGGEGHRDWVS-  521 (694)
T ss_dssp             EEEETTTT-------EEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEE---EEECSSTTSCSSCEE-
T ss_pred             EEEECCCC-------cceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcc---eeeccCCCCCCCcEE-
Confidence            99999876       88889999999999999999  999999999999999999764100   111111123444444 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                               +++|+|++.   ..+|++|+.|     +.|+|||+++..    ....+.   +|...|++++|+|++.
T Consensus       522 ---------~~~~~~~~~---~~~l~s~s~d-----~~v~vwd~~~~~----~~~~~~---~h~~~v~~v~~spdg~  574 (694)
T 3dm0_A          522 ---------CVRFSPNTL---QPTIVSASWD-----KTVKVWNLSNCK----LRSTLA---GHTGYVSTVAVSPDGS  574 (694)
T ss_dssp             ---------EEEECSCSS---SCEEEEEETT-----SCEEEEETTTCC----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             ---------EEEEeCCCC---cceEEEEeCC-----CeEEEEECCCCc----EEEEEc---CCCCCEEEEEEeCCCC
Confidence                     999999874   2379999999     999999997643    233333   5788999999999974

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.97  E-value=1.1e-30  Score=207.08  Aligned_cols=199  Identities=13%  Similarity=0.156  Sum_probs=153.4

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..+.+.|++++|+|++++|++|+.|+.|+||++...   ..+++..+.+|...|.+++|+|+  +++|++++.|+.|++|
T Consensus         8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~d~~v~vw   82 (377)
T 3dwl_C            8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGN---GWKHARTFSDHDKIVTCVDWAPK--SNRIVTCSQDRNAYVY   82 (377)
T ss_dssp             EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETT---EEEECCCBCCCSSCEEEEEECTT--TCCEEEEETTSSEEEC
T ss_pred             ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCC---ceEEEEEEecCCceEEEEEEeCC--CCEEEEEeCCCeEEEE
Confidence            346679999999999999999999999999999832   33778888999999999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec-ccceeeccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN-AIDSVTMFR  164 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  164 (240)
                      |+..+.    .+.+...+..|...|.+++|+|  ++.+|++++.|+.|++||++....   +.+...+.. |...+.   
T Consensus        83 d~~~~~----~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~v~---  150 (377)
T 3dwl_C           83 EKRPDG----TWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLRSTIL---  150 (377)
T ss_dssp             ----------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEE---
T ss_pred             EcCCCC----ceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccCCCeE---
Confidence            998751    1236777788999999999999  999999999999999999986321   123445555 666665   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc-----------ceeEeeecCCCCCCceEEEE
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW-----------LPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~v~  233 (240)
                             +++|+|++.     +|++++.|     +.|++||+.......           .....+... +|...|++++
T Consensus       151 -------~~~~~~~~~-----~l~~~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  212 (377)
T 3dwl_C          151 -------SLDWHPNNV-----LLAAGCAD-----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG  212 (377)
T ss_dssp             -------EEEECTTSS-----EEEEEESS-----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred             -------EEEEcCCCC-----EEEEEeCC-----CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence                   999999987     89999999     999999996432110           011122223 6888999999


Q ss_pred             EecCCC
Q 026295          234 WALNIG  239 (240)
Q Consensus       234 ~sp~~~  239 (240)
                      |+|++.
T Consensus       213 ~sp~~~  218 (377)
T 3dwl_C          213 FSPSGN  218 (377)
T ss_dssp             ECTTSS
T ss_pred             ECCCCC
Confidence            999974

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.97  E-value=6.7e-29  Score=198.34  Aligned_cols=184  Identities=22%  Similarity=0.242  Sum_probs=147.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      .|++++|+|+|++|++|+.|+.|+|||+.     +.+.+..+.+|...|.+++|+|+  +.+|++++.|+.|++||++.+
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~-----~~~~~~~~~~h~~~v~~~~~~p~--~~~l~s~s~d~~v~iwd~~~~  197 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIWDLRTG  197 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECC-----CCcEEEEEccCCCCEEEEEEcCC--CCEEEEecCCCcEEEEECCCC
Confidence            59999999999999999999999999998     55788889999999999999999  999999999999999999776


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-------ecccceeecc
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-------QNAIDSVTMF  163 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-------~~~~~~v~~~  163 (240)
                             ++...+. +...+.+++|+|. ++.+|++++.|+.|++||+++      ..+...+       ..|...+.  
T Consensus       198 -------~~~~~~~-~~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~------~~~~~~~~~~~~~~~~h~~~v~--  260 (393)
T 1erj_A          198 -------QCSLTLS-IEDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSET------GFLVERLDSENESGTGHKDSVY--  260 (393)
T ss_dssp             -------EEEEEEE-CSSCEEEEEECST-TCCEEEEEETTSCEEEEETTT------CCEEEEEC------CCCSSCEE--
T ss_pred             -------eeEEEEE-cCCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCC------CcEEEeecccccCCCCCCCCEE--
Confidence                   6666555 4577899999873 678899999999999999987      3444333       23444444  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc--------ceeEeeecCCCCCCceEEEEEe
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW--------LPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~--------~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                              +++|+|++.     +|++|+.|     +.|++||+++.....        .....+   .+|...|++++|+
T Consensus       261 --------~v~~~~~g~-----~l~s~s~d-----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~  319 (393)
T 1erj_A          261 --------SVVFTRDGQ-----SVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTY---IGHKDFVLSVATT  319 (393)
T ss_dssp             --------EEEECTTSS-----EEEEEETT-----SEEEEEEC---------------CEEEEE---ECCSSCEEEEEEC
T ss_pred             --------EEEECCCCC-----EEEEEeCC-----CEEEEEECCCCCCcccccCCCCCcceEEE---ecccCcEEEEEEC
Confidence                    999999987     89999999     999999997643211        112222   3688899999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      |++.
T Consensus       320 ~~~~  323 (393)
T 1erj_A          320 QNDE  323 (393)
T ss_dssp             GGGC
T ss_pred             CCCC
Confidence            9863

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=1.3e-29  Score=211.35  Aligned_cols=183  Identities=19%  Similarity=0.310  Sum_probs=159.0

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|...|.+++|+|++++|++++.|+.|++|+..      .+.+..+.+|...|.+++|+|+  +.+|++++.|+.|+
T Consensus       380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~------~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~d~~v~  451 (577)
T 2ymu_A          380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVWGVAFSPD--DQTIASASDDKTVK  451 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------CCEEEEEECCSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC------CCEEEEecCCCCCeEEEEECCC--CCEEEEEcCCCEEE
Confidence            466789999999999999999999999999999964      3467788899999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||...        +.+..+..|...|.+++|+|  ++.+|++++.|++|++||..       +++...+..|...+.  
T Consensus       452 ~w~~~~--------~~~~~~~~~~~~v~~~~~sp--d~~~las~~~d~~i~iw~~~-------~~~~~~~~~h~~~v~--  512 (577)
T 2ymu_A          452 LWNRNG--------QLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRN-------GQLLQTLTGHSSSVR--  512 (577)
T ss_dssp             EEETTS--------CEEEEEECCSSCEEEEEECT--TSCEEEEEETTSEEEEEETT-------SCEEEEEECCSSCEE--
T ss_pred             EEECCC--------CEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEcCC-------CCEEEEEeCCCCCEE--
Confidence            999743        67788889999999999999  99999999999999999954       466777888877776  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              +++|+|++.     +|++++.|     +.|+|||.. +.    ....+.   +|+..|++|+|+||+.
T Consensus       513 --------~l~~s~dg~-----~l~s~~~d-----g~v~lwd~~-~~----~~~~~~---~h~~~v~~~~fs~dg~  562 (577)
T 2ymu_A          513 --------GVAFSPDGQ-----TIASASDD-----KTVKLWNRN-GQ----LLQTLT---GHSSSVWGVAFSPDGQ  562 (577)
T ss_dssp             --------EEEECTTSS-----CEEEEETT-----SEEEEECTT-SC----EEEEEE---CCSSCEEEEEECTTSS
T ss_pred             --------EEEEcCCCC-----EEEEEECc-----CEEEEEeCC-CC----EEEEEc---CCCCCEEEEEEcCCCC
Confidence                    999999987     89999999     999999953 21    333444   6888999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3e-29  Score=215.50  Aligned_cols=206  Identities=28%  Similarity=0.432  Sum_probs=162.1

Q ss_pred             CcchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            1 MDKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         1 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |...+.+|.+.|++++|+|++++|++|+.||.|+||++...   +.+.+..+.+|.+.|.+++|+|+..+.+|++++.||
T Consensus         1 ~~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT---EEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             CeeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC---CCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            45678899999999999999999999999999999999743   567888899999999999999875578999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCC--CcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSST--SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      .|++||+..+     .+.....+..|...|.+++|+|  +  +.++++++.||.|++||++....    .....+..+..
T Consensus        78 ~I~vwd~~~~-----~~~~~~~~~~h~~~V~~v~~sp--~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~  146 (753)
T 3jro_A           78 KVLIWKEENG-----RWSQIAVHAVHSASVNSVQWAP--HEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAI  146 (753)
T ss_dssp             CEEEEEEETT-----EEEEEEEECCCSSCEEEEEECC--GGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSS
T ss_pred             eEEEEECCCC-----cccccccccCCCCCeEEEEECC--CCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCC
Confidence            9999999875     1247778888999999999999  7  89999999999999999987321    12223445555


Q ss_pred             eeeccccccceeeeEEEeCCCCC--------CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          159 SVTMFRKASCISASISWNPQKGE--------NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~--------~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      .+.          +++|+|....        .++.+|++|+.|     |.|++||+++....+.....+.   +|...|+
T Consensus       147 ~v~----------~l~~~p~~~~~~~~~~~~~d~~~l~sgs~d-----g~I~iwd~~~~~~~~~~~~~~~---~h~~~V~  208 (753)
T 3jro_A          147 GVN----------SASWAPATIEEDGEHNGTKESRKFVTGGAD-----NLVKIWKYNSDAQTYVLESTLE---GHSDWVR  208 (753)
T ss_dssp             CEE----------EEEECCCC---------CGGGCCEEEEETT-----SCEEEEEEETTTTEEEEEEEEC---CCSSCEE
T ss_pred             ceE----------EEEecCcccccccccccCCCCCEEEEEECC-----CeEEEEeccCCcccceeeeeec---CCCCcEE
Confidence            555          9999995100        012289999999     9999999998765545544444   5777999


Q ss_pred             EEEEecCC
Q 026295          231 AVAWALNI  238 (240)
Q Consensus       231 ~v~~sp~~  238 (240)
                      +++|+|++
T Consensus       209 ~l~~sp~~  216 (753)
T 3jro_A          209 DVAWSPTV  216 (753)
T ss_dssp             EEEECCCC
T ss_pred             EEEeccCC
Confidence            99999993

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=6.9e-30  Score=217.73  Aligned_cols=187  Identities=19%  Similarity=0.238  Sum_probs=156.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|...|.+++|+|++++|++|+.|++|+|||+.     +...+..+.+|...|.+++|+|+  +.+|++++.|++|+
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~-----~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~D~~i~  497 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA-----AGVSTRRFVGHTKDVLSVAFSLD--NRQIVSASRDRTIK  497 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC-----CCcceeEEeCCCCCEEEEEEeCC--CCEEEEEeCCCEEE
Confidence            467899999999999999999999999999999998     56788889999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEE---eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           84 LWEEIVEDAQPLQWKLCKS---FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +||....       .....   ..+|...|.+++|+|......+++++.|++|++||++.      .++...+..|...+
T Consensus       498 iwd~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~------~~~~~~~~~h~~~v  564 (694)
T 3dm0_A          498 LWNTLGE-------CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN------CKLRSTLAGHTGYV  564 (694)
T ss_dssp             EECTTSC-------EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT------CCEEEEECCCSSCE
T ss_pred             EEECCCC-------cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC------CcEEEEEcCCCCCE
Confidence            9998543       22222   23578889999999932236799999999999999987      56677777887777


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .          +++|+|++.     +|++|+.|     +.|+|||+.++...    ..+.    +...|++++|+|++
T Consensus       565 ~----------~v~~spdg~-----~l~sg~~D-----g~i~iwd~~~~~~~----~~~~----~~~~v~~~~~sp~~  614 (694)
T 3dm0_A          565 S----------TVAVSPDGS-----LCASGGKD-----GVVLLWDLAEGKKL----YSLE----ANSVIHALCFSPNR  614 (694)
T ss_dssp             E----------EEEECTTSS-----EEEEEETT-----SBCEEEETTTTEEE----ECCB----CSSCEEEEEECSSS
T ss_pred             E----------EEEEeCCCC-----EEEEEeCC-----CeEEEEECCCCceE----EEec----CCCcEEEEEEcCCC
Confidence            6          999999987     89999999     99999999876422    2222    44589999999986

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.97  E-value=2.7e-30  Score=205.58  Aligned_cols=199  Identities=14%  Similarity=0.185  Sum_probs=155.8

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-----eecCccEEEEEEcCCCCCCEEEEEe
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-----KVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      .+.+|.+.|.+++|+|++ .+|++|+.|++|++||+.     +.+.+..+     .+|...|.++.|++. .+.+|++++
T Consensus       152 ~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs  225 (380)
T 3iz6_a          152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-----TGQRISIFGSEFPSGHTADVLSLSINSL-NANMFISGS  225 (380)
T ss_dssp             BCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-----TCCEEEEECCCSSSSCCSCEEEEEECSS-SCCEEEEEE
T ss_pred             eccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-----CCcEEEEeecccCCCCccCeEEEEeecC-CCCEEEEEE
Confidence            366899999999999974 679999999999999998     44555555     578999999999873 288999999


Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .|+.|++||++...      ..+..+.+|...|.+++|+|  ++.+|++++.||+|++||+++      ......+..+.
T Consensus       226 ~D~~v~~wd~~~~~------~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~lwd~~~------~~~~~~~~~~~  291 (380)
T 3iz6_a          226 CDTTVRLWDLRITS------RAVRTYHGHEGDINSVKFFP--DGQRFGTGSDDGTCRLFDMRT------GHQLQVYNREP  291 (380)
T ss_dssp             TTSCEEEEETTTTC------CCCEEECCCSSCCCEEEECT--TSSEEEEECSSSCEEEEETTT------TEEEEEECCCC
T ss_pred             CCCeEEEEECCCCC------cceEEECCcCCCeEEEEEec--CCCeEEEEcCCCeEEEEECCC------CcEEEEecccc
Confidence            99999999996321      56778889999999999999  999999999999999999987      34444443322


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEee-ecCCCCCCceEEEEEec
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL-ALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~-~~~~~h~~~v~~v~~sp  236 (240)
                      ..   .......+.+++|+|++.     +|++|+.|     +.|++||.......    ..+ ....+|...|++++|+|
T Consensus       292 ~~---~~~~~~~v~~~~~s~~g~-----~l~~g~~d-----g~i~vwd~~~~~~~----~~~~~~~~~h~~~v~~l~~s~  354 (380)
T 3iz6_a          292 DR---NDNELPIVTSVAFSISGR-----LLFAGYSN-----GDCYVWDTLLAEMV----LNLGTLQNSHEGRISCLGLSS  354 (380)
T ss_dssp             SS---SCCSSCSCSEEEECSSSS-----EEEEECTT-----SCEEEEETTTCCEE----EEECCSCSSCCCCCCEEEECS
T ss_pred             cc---cccccCceEEEEECCCCC-----EEEEEECC-----CCEEEEECCCCceE----EEEecccCCCCCceEEEEECC
Confidence            11   011122344899999988     89999998     99999998765422    222 12346888999999999


Q ss_pred             CCC
Q 026295          237 NIG  239 (240)
Q Consensus       237 ~~~  239 (240)
                      |+.
T Consensus       355 dg~  357 (380)
T 3iz6_a          355 DGS  357 (380)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=5.7e-29  Score=197.78  Aligned_cols=191  Identities=16%  Similarity=0.155  Sum_probs=155.6

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcC-CCCCCEEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVP-PEFGDAVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~   81 (240)
                      .+..|.+.|++++|+|++ ++|++|+.|+.|+|||+...   .........+|...|.+++|+| +  +.+|++++.|+.
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~d~~  142 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ---NKTSFIQGMGPGDAITGMKFNQFN--TNQLFVSSIRGA  142 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST---TCEEEECCCSTTCBEEEEEEETTE--EEEEEEEETTTE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc---ccceeeecCCcCCceeEEEeCCCC--CCEEEEEeCCCE
Confidence            466899999999999999 99999999999999999843   2233333447999999999999 6  789999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeee---ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFES---TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      |++||+..        ..+..+..   +...|.+++|+|  ++.+|++++.|+.|++||++       .+....+..|..
T Consensus       143 i~iwd~~~--------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-------~~~~~~~~~h~~  205 (383)
T 3ei3_B          143 TTLRDFSG--------SVIQVFAKTDSWDYWYCCVDVSV--SRQMLATGDSTGRLLLLGLD-------GHEIFKEKLHKA  205 (383)
T ss_dssp             EEEEETTS--------CEEEEEECCCCSSCCEEEEEEET--TTTEEEEEETTSEEEEEETT-------SCEEEEEECSSS
T ss_pred             EEEEECCC--------CceEEEeccCCCCCCeEEEEECC--CCCEEEEECCCCCEEEEECC-------CCEEEEeccCCC
Confidence            99999974        34444443   447899999999  99999999999999999985       356667777777


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec-C
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL-N  237 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~  237 (240)
                      .+.          +++|+|++..    +|++|+.|     +.|++||+++..........+    +|...|++++|+| +
T Consensus       206 ~v~----------~~~~~~~~~~----~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~  262 (383)
T 3ei3_B          206 KVT----------HAEFNPRCDW----LMATSSVD-----ATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTD  262 (383)
T ss_dssp             CEE----------EEEECSSCTT----EEEEEETT-----SEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTT
T ss_pred             cEE----------EEEECCCCCC----EEEEEeCC-----CEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCC
Confidence            776          9999999852    78999998     999999998855433344444    3777999999999 7


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       263 ~~  264 (383)
T 3ei3_B          263 ST  264 (383)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=9.9e-30  Score=200.71  Aligned_cols=196  Identities=14%  Similarity=0.176  Sum_probs=145.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeC------CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGST------DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~------d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ...|+..|++++|+|||++||+|+.      |+.|++|+...... ..........|...|.+++|+|+  +. +++++.
T Consensus        38 p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-~~~~~~~~~~~~~~V~~~~~s~d--~~-~l~~s~  113 (357)
T 4g56_B           38 PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-NESLCTAGVQTEAGVTDVAWVSE--KG-ILVASD  113 (357)
T ss_dssp             --CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----CGGGCSEEEECSSCEEEEEEETT--TE-EEEEET
T ss_pred             cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-ceeEecccCCCCCCEEEEEEcCC--CC-EEEEEC
Confidence            3469999999999999999999997      67899998863210 11122334578899999999998  65 556788


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      |++|++||+..+...   ........+|...|.+++|+|  ++.+|++++.|++|++||+++      .++...+..|..
T Consensus       114 dg~v~lWd~~~~~~~---~~~~~~~~~h~~~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~------~~~~~~~~~h~~  182 (357)
T 4g56_B          114 SGAVELWEILEKESL---LVNKFAKYEHDDIVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQ------KAVLKSYNAHSS  182 (357)
T ss_dssp             TSCEEEC-----------CCCCEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTT------TEEEEEECCCSS
T ss_pred             CCEEEEeecccccee---EEEeeccCCCCCCEEEEEECC--CCCEEEEEeCCCeEEEEECCC------CcEEEEEcCCCC
Confidence            999999999765210   001123346889999999999  999999999999999999987      577777878877


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .+.          +++|+|++..    +|++++.|     +.|++||++++......    . ...|...|++++|+|+.
T Consensus       183 ~v~----------~v~~s~~~~~----~~~s~~~d-----g~v~~wd~~~~~~~~~~----~-~~~~~~~v~~v~~sp~~  238 (357)
T 4g56_B          183 EVN----------CVAACPGKDT----IFLSCGED-----GRILLWDTRKPKPATRI----D-FCASDTIPTSVTWHPEK  238 (357)
T ss_dssp             CEE----------EEEECTTCSS----CEEEEETT-----SCEEECCTTSSSCBCBC----C-CTTCCSCEEEEEECTTS
T ss_pred             CEE----------EEEEccCCCc----eeeeeccC-----CceEEEECCCCceeeee----e-eccccccccchhhhhcc
Confidence            776          9999998742    78999998     99999999876533222    1 22466689999999986


Q ss_pred             C
Q 026295          239 G  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       239 ~  239 (357)
T 4g56_B          239 D  239 (357)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=2.1e-29  Score=201.66  Aligned_cols=193  Identities=16%  Similarity=0.228  Sum_probs=157.0

Q ss_pred             hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCC-CEEEEEecCC
Q 026295            5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFG-DAVACICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~d~   80 (240)
                      +..|.+.|++++|+| ++++|++|+.||.|+||++......  ..+++..+.+|...|.+++|+|+  + .+|++++.|+
T Consensus        77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~l~s~~~dg  154 (402)
T 2aq5_A           77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT--AQNVLLSAGCDN  154 (402)
T ss_dssp             BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSS--BTTEEEEEETTS
T ss_pred             EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcC--CCCEEEEEcCCC
Confidence            567999999999999 8999999999999999999743100  01356678899999999999998  7 6999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEe--eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-eccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSF--ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAI  157 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~  157 (240)
                      .|++||+..+       +.+..+  ..|...|.+++|+|  ++.+|++++.||.|++||+++      .+....+ ..+.
T Consensus       155 ~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~~~~  219 (402)
T 2aq5_A          155 VILVWDVGTG-------AAVLTLGPDVHPDTIYSVDWSR--DGALICTSCRDKRVRVIEPRK------GTVVAEKDRPHE  219 (402)
T ss_dssp             CEEEEETTTT-------EEEEEECTTTCCSCEEEEEECT--TSSCEEEEETTSEEEEEETTT------TEEEEEEECSSC
T ss_pred             EEEEEECCCC-------CccEEEecCCCCCceEEEEECC--CCCEEEEEecCCcEEEEeCCC------CceeeeeccCCC
Confidence            9999999876       788888  77889999999999  999999999999999999987      4556665 4454


Q ss_pred             ce-eeccccccceeeeEEEeCCCCCCCCceEEEE---ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          158 DS-VTMFRKASCISASISWNPQKGENQGSSFVLG---FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       158 ~~-v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~---~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                      .. +.          .+.|+|++.     +|++|   +.|     +.|++||+.+....... ..+    .|...|.+++
T Consensus       220 ~~~~~----------~~~~~~~~~-----~l~~g~~~~~d-----~~i~iwd~~~~~~~~~~-~~~----~~~~~v~~~~  274 (402)
T 2aq5_A          220 GTRPV----------HAVFVSEGK-----ILTTGFSRMSE-----RQVALWDTKHLEEPLSL-QEL----DTSSGVLLPF  274 (402)
T ss_dssp             SSSCC----------EEEECSTTE-----EEEEEECTTCC-----EEEEEEETTBCSSCSEE-EEC----CCCSSCEEEE
T ss_pred             CCcce----------EEEEcCCCc-----EEEEeccCCCC-----ceEEEEcCccccCCceE-Eec----cCCCceeEEE
Confidence            33 33          899999876     78888   566     99999999876542211 121    3666899999


Q ss_pred             EecCCC
Q 026295          234 WALNIG  239 (240)
Q Consensus       234 ~sp~~~  239 (240)
                      |+|++.
T Consensus       275 ~s~~~~  280 (402)
T 2aq5_A          275 FDPDTN  280 (402)
T ss_dssp             EETTTT
T ss_pred             EcCCCC
Confidence            999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.3e-28  Score=193.21  Aligned_cols=204  Identities=19%  Similarity=0.339  Sum_probs=163.4

Q ss_pred             hhcccccceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+..|.+.|++++|+++  +++|++|+.||.|+|||+...   ....+..+..|...|.+++|+|+..+.+|++++.|+.
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~  126 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  126 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC---ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCc
Confidence            46679999999999987  999999999999999999843   3447778888999999999998733689999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-----------CCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-----------TSLKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      |++||+.....     .....+..|...|.+++|+|..           ++.+|++++.||.|++||++....  .+.+.
T Consensus       127 i~v~d~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~  199 (379)
T 3jrp_A          127 VSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ--TYVLE  199 (379)
T ss_dssp             EEEEECCTTSC-----CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT--EEEEE
T ss_pred             EEEEecCCCCc-----eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc--ceeeE
Confidence            99999976522     3444567788999999998821           378899999999999999986422  14455


Q ss_pred             eeeecccceeeccccccceeeeEEEeCC---CCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQ---KGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD  227 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~---~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~  227 (240)
                      ..+..|...+.          +++|+|+   +.     +|++++.|     +.|++||+......+..  .+.....|..
T Consensus       200 ~~~~~h~~~v~----------~~~~sp~~~~~~-----~l~s~~~d-----g~i~iwd~~~~~~~~~~--~~~~~~~~~~  257 (379)
T 3jrp_A          200 STLEGHSDWVR----------DVAWSPTVLLRS-----YLASVSQD-----RTCIIWTQDNEQGPWKK--TLLKEEKFPD  257 (379)
T ss_dssp             EEECCCSSCEE----------EEEECCCCSSSE-----EEEEEETT-----SCEEEEEESSTTSCCEE--EESSSSCCSS
T ss_pred             EEEecccCcEe----------EEEECCCCCCCC-----eEEEEeCC-----CEEEEEeCCCCCcccee--eeeccccCCC
Confidence            66667777666          9999999   55     89999999     99999999886543222  2223345888


Q ss_pred             ceEEEEEecCCC
Q 026295          228 EVYAVAWALNIG  239 (240)
Q Consensus       228 ~v~~v~~sp~~~  239 (240)
                      .|++++|+|++.
T Consensus       258 ~v~~~~~s~~g~  269 (379)
T 3jrp_A          258 VLWRASWSLSGN  269 (379)
T ss_dssp             CEEEEEECSSSC
T ss_pred             cEEEEEEcCCCC
Confidence            999999999975

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9.2e-29  Score=194.67  Aligned_cols=125  Identities=16%  Similarity=0.263  Sum_probs=107.4

Q ss_pred             hhcccccceEEEEECCC---CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNYC---GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~---~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+..|.+.|++++|+|+   |++|++|+.||.|+||++...   .......+.+|...|.+++|+|+  +++|++++.|+
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg  108 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS---GQTIPKAQQMHTGPVLDVCWSDD--GSKVFTASCDK  108 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT---SCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTS
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC---CceeEEEeccccCCEEEEEECcC--CCEEEEEcCCC
Confidence            46789999999999999   699999999999999999842   12344678889999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      .|++||+..+       +... +..|...|.+++|+|..++.+|++++.||.|++||+++.
T Consensus       109 ~v~iwd~~~~-------~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A          109 TAKMWDLSSN-------QAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             EEEEEETTTT-------EEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS
T ss_pred             cEEEEEcCCC-------Ccee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC
Confidence            9999999765       4444 566889999999944338999999999999999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=6.2e-29  Score=196.69  Aligned_cols=188  Identities=15%  Similarity=0.108  Sum_probs=142.0

Q ss_pred             cccceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ++..+.+++|||||++|+++  +.|++|+|||+.     +.+++..+. |.+.|.+++|+|+  |+++++++.++ +++|
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-----~~~~~~~~~-~~~~V~~v~fspd--g~~l~s~s~~~-~~~~  202 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-----DLTEKFEIE-TRGEVKDLHFSTD--GKVVAYITGSS-LEVI  202 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-----TTEEEEEEE-CSSCCCEEEECTT--SSEEEEECSSC-EEEE
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-----CCcEEEEeC-CCCceEEEEEccC--CceEEecccee-EEEE
Confidence            44568899999999998754  478999999998     567777775 7788999999999  99999988555 5555


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC----cEEEEEecCcccccceeEEeeeecccceee
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG----HVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      +...+..     ........|...|.+++|+|  ++.++++++.|+    .+++|++.....  .......+..+...|.
T Consensus       203 ~~~~~~~-----~~~~~~~~~~~~v~~v~fsp--dg~~l~~~s~d~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~V~  273 (365)
T 4h5i_A          203 STVTGSC-----IARKTDFDKNWSLSKINFIA--DDTVLIAASLKKGKGIVLTKISIKSGNT--SVLRSKQVTNRFKGIT  273 (365)
T ss_dssp             ETTTCCE-----EEEECCCCTTEEEEEEEEEE--TTEEEEEEEESSSCCEEEEEEEEETTEE--EEEEEEEEESSCSCEE
T ss_pred             EeccCcc-----eeeeecCCCCCCEEEEEEcC--CCCEEEEEecCCcceeEEeeccccccee--cceeeeeecCCCCCeE
Confidence            5544310     22234456788999999999  999999999887    578888875211  0122334555665665


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                +++|+|++.     +||+|+.|     +.|+|||+.+.+    ....  ...+|..+|++|+||||+.
T Consensus       274 ----------~~~~Spdg~-----~lasgs~D-----~~V~iwd~~~~~----~~~~--~~~gH~~~V~~v~fSpdg~  325 (365)
T 4h5i_A          274 ----------SMDVDMKGE-----LAVLASND-----NSIALVKLKDLS----MSKI--FKQAHSFAITEVTISPDST  325 (365)
T ss_dssp             ----------EEEECTTSC-----EEEEEETT-----SCEEEEETTTTE----EEEE--ETTSSSSCEEEEEECTTSC
T ss_pred             ----------eEEECCCCC-----ceEEEcCC-----CEEEEEECCCCc----EEEE--ecCcccCCEEEEEECCCCC
Confidence                      999999998     99999999     999999988753    2222  1346888999999999984

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.97  E-value=4.3e-29  Score=208.21  Aligned_cols=193  Identities=18%  Similarity=0.290  Sum_probs=153.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +|++|.+.|++++|+|+|++||+|+.|+.|+|||..      .+++..+.+|.+.|.+++|+|+  +++|++++.|+.|+
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~------~~~~~~l~gh~~~V~~l~fspd--g~~las~~~d~~i~   82 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN------GQLLQTLTGHSSSVWGVAFSPD--GQTIASASDDKTVK   82 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT------SCEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC------CCEEEEEeCCCCCEEEEEECCC--CCEEEEEeCCCEEE
Confidence            488999999999999999999999999999999954      3577889999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee---
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV---  160 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v---  160 (240)
                      +||...        +++..+.+|...|.+++|+|  ++.+|++++.|+.+++|+......       .....+...+   
T Consensus        83 vWd~~~--------~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~v~~~  145 (577)
T 2ymu_A           83 LWNRNG--------QLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLL-------QTLTGHSSSVWGV  145 (577)
T ss_dssp             EEETTS--------CEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCCEE-------EEECCCSSCEEEE
T ss_pred             EEECCC--------CEEEEEECCCCCEEEEEECC--CCCEEEEEcCCCceeeccccccee-------eeccCCCCceeee
Confidence            999643        67888999999999999999  999999999999999999753210       0111110000   


Q ss_pred             ----------------------------eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          161 ----------------------------TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       161 ----------------------------~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                                                  .....+...+..+.|+|++.     +|++++.|     +.|++|+...    
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d-----~~v~~w~~~~----  211 (577)
T 2ymu_A          146 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-----TIASASDD-----KTVKLWNRNG----  211 (577)
T ss_dssp             EECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-----CEEEEETT-----SEEEEECTTS----
T ss_pred             eeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCC-----EEEEEcCC-----CEEEEEeCCC----
Confidence                                        00011222445788999887     89999999     9999999532    


Q ss_pred             cceeEeeecCCCCCCceEEEEEecCCC
Q 026295          213 WLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       213 ~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       .....+.   +|...|++++|+||+.
T Consensus       212 -~~~~~~~---~~~~~v~~~~~s~dg~  234 (577)
T 2ymu_A          212 -QLLQTLT---GHSSSVRGVAFSPDGQ  234 (577)
T ss_dssp             -CEEEEEE---CCSSCEEEEEECTTSS
T ss_pred             -cEEEEEe---cCCCCEEEEEECCCCC
Confidence             1233334   5777999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=5.4e-29  Score=195.99  Aligned_cols=205  Identities=16%  Similarity=0.292  Sum_probs=155.8

Q ss_pred             cccceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcC-CCCCCEEEEEecCCeE
Q 026295            8 LDKGTTSSSWNYC----GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVP-PEFGDAVACICSDGSL   82 (240)
Q Consensus         8 h~~~v~~~~~s~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v   82 (240)
                      |...|.+++|+|+    +++|++|+.||.|++||+.     +.+.+..+.+|...|.+++|+| +  +.+|++++.|+.|
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~-----~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~s~~~dg~i  140 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPI-----TMQCIKHYVGHGNAINELKFHPRD--PNLLLSVSKDHAL  140 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTT-----TCCEEEEEESCCSCEEEEEECSSC--TTEEEEEETTSCE
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEch-----hceEeeeecCCCCcEEEEEECCCC--CCEEEEEeCCCeE
Confidence            5678999999998    6799999999999999998     5567888889999999999999 7  8999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEe---eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee-----------
Q 026295           83 LLWEEIVEDAQPLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ-----------  148 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~-----------  148 (240)
                      ++||++.+       +.+..+   ..|...|.+++|+|  ++.+|++++.||.|++||+++........           
T Consensus       141 ~iwd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (366)
T 3k26_A          141 RLWNIQTD-------TLVAIFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTN  211 (366)
T ss_dssp             EEEETTTT-------EEEEEECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred             EEEEeecC-------eEEEEecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCc
Confidence            99999876       777777   67889999999999  99999999999999999998642210000           


Q ss_pred             -------------------------------E---------Eeeeeccc---------------ceeeccccccceeeeE
Q 026295          149 -------------------------------L---------QAEFQNAI---------------DSVTMFRKASCISASI  173 (240)
Q Consensus       149 -------------------------------~---------~~~~~~~~---------------~~v~~~~~~~~~~~~v  173 (240)
                                                     .         +..+....               ..+.....+...+.++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  291 (366)
T 3k26_A          212 RPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM  291 (366)
T ss_dssp             SCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC
T ss_pred             ccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE
Confidence                                           0         00000000               0011111122245578


Q ss_pred             EEeCC--CCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          174 SWNPQ--KGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       174 ~~~p~--~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +|+|+  +.     +|++|+.|     +.|++||+.+..........+..+. |...|++++|+|++.
T Consensus       292 ~~s~~~~~~-----~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~  348 (366)
T 3k26_A          292 RFSMDFWQK-----MLALGNQV-----GKLYVWDLEVEDPHKAKCTTLTHHK-CGAAIRQTSFSRDSS  348 (366)
T ss_dssp             CCEECTTSS-----EEEEECTT-----SCEEEEECCSSSGGGCEEEEECCTT-CCSCEEEEEECTTSS
T ss_pred             EEcCCCCCc-----EEEEEecC-----CcEEEEECCCCCCccccceEEcccc-cCCceEEEEeCCCCC
Confidence            88888  65     89999998     9999999988765544444554332 367999999999874

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=2.6e-28  Score=197.36  Aligned_cols=200  Identities=14%  Similarity=0.221  Sum_probs=148.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC------CCcEEEEeEeeecC------------ccEEEEEEcCCC
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS------SSSFTCNLKTKVHA------------GAILKVVWVPPE   68 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~~h~------------~~v~~~~~~~~~   68 (240)
                      .+.+.|++++|+|+|++||+|+.||.|+||++....      ....+....+.+|.            ..|.+++|+|+ 
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~-  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ-  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC-
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC-
Confidence            356899999999999999999999999999997431      01334678888998            88999999998 


Q ss_pred             CC--CEEEEEecCCeEEEEEeeeccCC--------------------Ccc------------cEEEEE-eeeccccEEeE
Q 026295           69 FG--DAVACICSDGSLLLWEEIVEDAQ--------------------PLQ------------WKLCKS-FESTSTQVLDV  113 (240)
Q Consensus        69 ~~--~~l~s~~~d~~v~iwd~~~~~~~--------------------~~~------------~~~~~~-~~~~~~~v~~~  113 (240)
                       +  .+|++++.|+.|++||+......                    ...            ..+... ..+|...|.++
T Consensus       105 -~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          105 -KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             -CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             -CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence             6  78999999999999999764110                    000            001112 24688999999


Q ss_pred             EEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee-------eecccceeeccccccceeeeEEEeCCC-CCCCCc
Q 026295          114 QFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE-------FQNAIDSVTMFRKASCISASISWNPQK-GENQGS  185 (240)
Q Consensus       114 ~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~~v~~~p~~-~~~~~~  185 (240)
                      +|+|  ++.+|+++ .|+.|++||++..     ......       +..|...+          .+++|+|++ .     
T Consensus       184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v----------~~~~~~p~~~~-----  240 (447)
T 3dw8_B          184 SINS--DYETYLSA-DDLRINLWHLEIT-----DRSFNIVDIKPANMEELTEVI----------TAAEFHPNSCN-----  240 (447)
T ss_dssp             EECT--TSSEEEEE-CSSEEEEEETTEE-----EEEEEEEECCCSSGGGCCCCE----------EEEEECSSCTT-----
T ss_pred             EEcC--CCCEEEEe-CCCeEEEEECCCC-----CceeeeeecccccccccCcce----------EEEEECCCCCc-----
Confidence            9999  99999998 7999999999842     222322       23344444          499999998 5     


Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC------------ceEEEEEecCCC
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD------------EVYAVAWALNIG  239 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~------------~v~~v~~sp~~~  239 (240)
                      +|++|+.|     +.|++||+++..........+.   +|..            .|++++|+|++.
T Consensus       241 ~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~  298 (447)
T 3dw8_B          241 TFVYSSSK-----GTIRLCDMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSGR  298 (447)
T ss_dssp             EEEEEETT-----SCEEEEETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECTTSS
T ss_pred             EEEEEeCC-----CeEEEEECcCCccccceeeEec---cCCCccccccccccCceEEEEEECCCCC
Confidence            89999999     9999999987664222223333   3443            899999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.7e-28  Score=191.25  Aligned_cols=195  Identities=13%  Similarity=0.149  Sum_probs=157.0

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|.+.|++++|+|++++|++|+.||.|+|||+.     +.+.+..+.+|...|.+++|+|+  +++|++++.|+.|+
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~dg~i~   99 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-----NGERLGTLDGHTGTIWSIDVDCF--TKYCVTGSADYSIK   99 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT-----TCCEEEEECCCSSCEEEEEECTT--SSEEEEEETTTEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC-----CchhhhhhhhcCCcEEEEEEcCC--CCEEEEEeCCCeEE
Confidence            478899999999999999999999999999999998     55778889999999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCccccccee-----EEeee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQ-----LQAEF  153 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~-----~~~~~  153 (240)
                      +||+..+       +.+..+. +...+.+++|+|  ++.++++++.+     +.|++||+..........     ....+
T Consensus       100 iwd~~~~-------~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~  169 (369)
T 3zwl_B          100 LWDVSNG-------QCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI  169 (369)
T ss_dssp             EEETTTC-------CEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred             EEECCCC-------cEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence            9999776       6677776 778999999999  99999999999     999999998643322111     11112


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                      ..+..        ...+.+++|+|++.     +|++++.|     +.|++||+.+..   .....+.   .|...|++++
T Consensus       170 ~~~~~--------~~~~~~~~~~~~~~-----~l~~~~~d-----g~i~i~d~~~~~---~~~~~~~---~~~~~v~~~~  225 (369)
T 3zwl_B          170 ITHEG--------LDAATVAGWSTKGK-----YIIAGHKD-----GKISKYDVSNNY---EYVDSID---LHEKSISDMQ  225 (369)
T ss_dssp             ECCTT--------CCCEEEEEECGGGC-----EEEEEETT-----SEEEEEETTTTT---EEEEEEE---CCSSCEEEEE
T ss_pred             cCCcC--------ccceeEEEEcCCCC-----EEEEEcCC-----CEEEEEECCCCc---EeEEEEe---cCCCceeEEE
Confidence            22221        11334899999987     89999998     999999987632   2233333   4677999999


Q ss_pred             EecCCC
Q 026295          234 WALNIG  239 (240)
Q Consensus       234 ~sp~~~  239 (240)
                      |+|++.
T Consensus       226 ~~~~~~  231 (369)
T 3zwl_B          226 FSPDLT  231 (369)
T ss_dssp             ECTTSS
T ss_pred             ECCCCC
Confidence            999874

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.6e-29  Score=205.44  Aligned_cols=193  Identities=13%  Similarity=0.110  Sum_probs=146.7

Q ss_pred             hcccccceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCCCCc------EEEEeEeeecCccEEEEEEcCCCCCCE
Q 026295            5 VATLDKGTTSSSWNYC------GQRLATGSTDGTLSIFDSPDPSSSS------FTCNLKTKVHAGAILKVVWVPPEFGDA   72 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~------~~~l~~~~~d~~i~iw~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~~   72 (240)
                      +..|.+.|.+++|+|+      +.+||+++.||+|+|||+.......      ..+...+.+|...|.+++|+++   ..
T Consensus       203 l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~  279 (524)
T 2j04_B          203 IVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TT  279 (524)
T ss_dssp             EEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SE
T ss_pred             EEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---Ce
Confidence            4456789999999996      5799999999999999997432110      0122467789999999999875   47


Q ss_pred             EEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeE--EEeecCCC-cEEEEEeCCCcEEEEEecCcccccceeE
Q 026295           73 VACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDV--QFGVSSTS-LKLVAAYSDGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        73 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~  149 (240)
                      |++|+.||+|++||++.+.      .+...+..|...|.++  .|+|  ++ .+|++++.|++|+|||+++.      ++
T Consensus       280 lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~--~g~~~laS~S~D~tvklWD~~~~------~~  345 (524)
T 2j04_B          280 VVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSD--FEDTVVSTVAVDGYFYIFNPKDI------AT  345 (524)
T ss_dssp             EEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCT--TSCCEEEEEETTSEEEEECGGGH------HH
T ss_pred             EEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCC--CCCeEEEEeccCCeEEEEECCCC------Cc
Confidence            9999999999999997541      3445678899999999  4566  77 78999999999999999873      33


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                      ...+..+...        ..+.+++|+|++.     .|++++.|     ++|++||++......    .+.   +|.+.|
T Consensus       346 ~~~~~~~~~~--------~~v~~v~fsp~~~-----~l~s~~~d-----~tv~lwd~~~~~~~~----~l~---gH~~~V  400 (524)
T 2j04_B          346 TKTTVSRFRG--------SNLVPVVYCPQIY-----SYIYSDGA-----SSLRAVPSRAAFAVH----PLV---SRETTI  400 (524)
T ss_dssp             HCEEEEECSC--------CSCCCEEEETTTT-----EEEEECSS-----SEEEEEETTCTTCCE----EEE---ECSSCE
T ss_pred             cccccccccc--------CcccceEeCCCcC-----eEEEeCCC-----CcEEEEECcccccce----eee---cCCCce
Confidence            3333333210        0123899999987     78888888     999999998765332    233   478899


Q ss_pred             EEEEEecCCC
Q 026295          230 YAVAWALNIG  239 (240)
Q Consensus       230 ~~v~~sp~~~  239 (240)
                      ++|+|+|++.
T Consensus       401 ~sva~Sp~g~  410 (524)
T 2j04_B          401 TAIGVSRLHP  410 (524)
T ss_dssp             EEEECCSSCC
T ss_pred             EEEEeCCCCC
Confidence            9999999874

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=7.5e-28  Score=190.07  Aligned_cols=197  Identities=14%  Similarity=0.199  Sum_probs=155.4

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|.+.|++++|+|++++|++|+.|+.|+||++...   ..+.+..+.+|...|.+++|+|+  +.+|++++.|+.|++
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~v   78 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDWAPD--SNRIVTCGTDRNAYV   78 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC---cEEeeeeecCCCCcccEEEEeCC--CCEEEEEcCCCeEEE
Confidence            3458899999999999999999999999999999743   33478888999999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~  163 (240)
                      ||+..+.     +.....+..+...|.+++|+|  ++.+|++++.|+.|++||++....   ......+ ..|...+.  
T Consensus        79 wd~~~~~-----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~--  146 (372)
T 1k8k_C           79 WTLKGRT-----WKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVL--  146 (372)
T ss_dssp             EEEETTE-----EEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEE--
T ss_pred             EECCCCe-----eeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCee--
Confidence            9997651     123444466888999999999  999999999999999999986321   1222222 33444454  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC--------------CcceeEeeecCCCCCCce
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN--------------RWLPVAELALPEDRSDEV  229 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~--------------~~~~~~~~~~~~~h~~~v  229 (240)
                              +++|+|++.     +|++++.|     +.|++||+.....              .......+   .+|...|
T Consensus       147 --------~~~~~~~~~-----~l~~~~~d-----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v  205 (372)
T 1k8k_C          147 --------SLDWHPNSV-----LLAAGSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES---SSSCGWV  205 (372)
T ss_dssp             --------EEEECTTSS-----EEEEEETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC---CCCSSCE
T ss_pred             --------EEEEcCCCC-----EEEEEcCC-----CCEEEEEcccccccccccccccccccchhhheEec---CCCCCeE
Confidence                    999999887     89999998     9999999753210              11223333   3577899


Q ss_pred             EEEEEecCCC
Q 026295          230 YAVAWALNIG  239 (240)
Q Consensus       230 ~~v~~sp~~~  239 (240)
                      ++++|+|++.
T Consensus       206 ~~~~~~~~~~  215 (372)
T 1k8k_C          206 HGVCFSANGS  215 (372)
T ss_dssp             EEEEECSSSS
T ss_pred             EEEEECCCCC
Confidence            9999999873

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.96  E-value=2.3e-28  Score=211.27  Aligned_cols=188  Identities=13%  Similarity=0.204  Sum_probs=163.0

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+.+.+|.+.|.+++|+|++++||+|+.||.|+|||+.     +++.+..+.+|.++|.+++|+|+  +.+|++++.|+.
T Consensus         6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-----~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~   78 (814)
T 3mkq_A            6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-----TQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFR   78 (814)
T ss_dssp             EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-----TTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSE
T ss_pred             ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECC-----CCceEEEEecCCCcEEEEEEeCC--CCEEEEEeCCCe
Confidence            35688999999999999999999999999999999998     56788889999999999999999  999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      |++||+.++       +.+..+..|...|.+++|+|  ++.+|++++.||.|++||+.+.     +.....+..|...+.
T Consensus        79 i~vw~~~~~-------~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~v~  144 (814)
T 3mkq_A           79 IRVFNYNTG-------EKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVM  144 (814)
T ss_dssp             EEEEETTTC-------CEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGT-----SEEEEEEECCSSCEE
T ss_pred             EEEEECCCC-------cEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCC-----ceEEEEEcCCCCcEE
Confidence            999999776       78888889999999999999  9999999999999999999763     356666777776666


Q ss_pred             ccccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          162 MFRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                                +++|+| ++.     +|++++.|     +.|++||+.+.......    ..  +|...|+.++|+|
T Consensus       145 ----------~~~~~p~~~~-----~l~~~~~d-----g~v~vwd~~~~~~~~~~----~~--~~~~~v~~~~~~~  194 (814)
T 3mkq_A          145 ----------CVAFNPKDPS-----TFASGCLD-----RTVKVWSLGQSTPNFTL----TT--GQERGVNYVDYYP  194 (814)
T ss_dssp             ----------EEEEETTEEE-----EEEEEETT-----SEEEEEETTCSSCSEEE----EC--CCTTCCCEEEECC
T ss_pred             ----------EEEEEcCCCC-----EEEEEeCC-----CeEEEEECCCCcceeEE----ec--CCCCCEEEEEEEE
Confidence                      999999 555     89999999     99999999776543322    11  3446899999999

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=2.2e-27  Score=187.43  Aligned_cols=197  Identities=16%  Similarity=0.195  Sum_probs=156.5

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|...|.+++|+|++++|++++.|+.|++||+...   .......+..|...|.+++|+|+  +.+|++++.|+.|+
T Consensus        47 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~v~  121 (372)
T 1k8k_C           47 ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVIS  121 (372)
T ss_dssp             EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT---EEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSEE
T ss_pred             eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC---eeeeeEEeecCCCceeEEEECCC--CCEEEEEeCCCEEE
Confidence            46679999999999999999999999999999999733   33334445678999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc------------ccceeEE
Q 026295           84 LWEEIVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI------------LKNWQLQ  150 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~------------~~~~~~~  150 (240)
                      +||+....    .+.....+ ..|...|.+++|+|  ++.+|++++.||.|++||++....            ....+..
T Consensus       122 i~d~~~~~----~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  195 (372)
T 1k8k_C          122 ICYFEQEN----DWWVCKHIKKPIRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  195 (372)
T ss_dssp             EEEEETTT----TEEEEEEECTTCCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             EEEecCCC----cceeeeeeecccCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhhe
Confidence            99998752    12333343 45788999999999  999999999999999999752110            1124555


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      ..+..+...+.          +++|+|++.     +|++++.|     +.|++||+.+..    ....+.   .|..+|+
T Consensus       196 ~~~~~~~~~v~----------~~~~~~~~~-----~l~~~~~d-----~~i~i~d~~~~~----~~~~~~---~~~~~v~  248 (372)
T 1k8k_C          196 FESSSSCGWVH----------GVCFSANGS-----RVAWVSHD-----STVCLADADKKM----AVATLA---SETLPLL  248 (372)
T ss_dssp             EECCCCSSCEE----------EEEECSSSS-----EEEEEETT-----TEEEEEEGGGTT----EEEEEE---CSSCCEE
T ss_pred             EecCCCCCeEE----------EEEECCCCC-----EEEEEeCC-----CEEEEEECCCCc----eeEEEc---cCCCCeE
Confidence            55656655555          999999987     89999998     999999998764    333344   4667999


Q ss_pred             EEEEecCC
Q 026295          231 AVAWALNI  238 (240)
Q Consensus       231 ~v~~sp~~  238 (240)
                      +++|+|++
T Consensus       249 ~~~~~~~~  256 (372)
T 1k8k_C          249 AVTFITES  256 (372)
T ss_dssp             EEEEEETT
T ss_pred             EEEEecCC
Confidence            99999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=2.4e-28  Score=196.17  Aligned_cols=192  Identities=16%  Similarity=0.190  Sum_probs=151.5

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..+....|++++++|++|+.|+.|+|||+.     ..+....+.+|...|.+++|+|+  +.+|++++.|+.|++||+..
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~s~d~~i~iwd~~~  170 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSN-----FNLQREIDQAHVSEITKLKFFPS--GEALISSSQDMQLKIWSVKD  170 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTT-----SCEEEEETTSSSSCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCC-----CcceeeecccccCccEEEEECCC--CCEEEEEeCCCeEEEEeCCC
Confidence            344555789999999999999999999998     55777777899999999999999  99999999999999999976


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc---ceeecc---
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI---DSVTMF---  163 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~---~~v~~~---  163 (240)
                      +       +.+..+..|...|.+++|+|  ++.+|++++.|++|++||+++      .+....+..+.   ..+...   
T Consensus       171 ~-------~~~~~~~~h~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~~~~v~~~~~~  235 (420)
T 3vl1_A          171 G-------SNPRTLIGHRATVTDIAIID--RGRNVLSASLDGTIRLWECGT------GTTIHTFNRKENPHDGVNSIALF  235 (420)
T ss_dssp             C-------CCCEEEECCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTT------TEEEEEECBTTBTTCCEEEEEEE
T ss_pred             C-------cCceEEcCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEeECCC------CceeEEeecCCCCCCCccEEEEe
Confidence            6       67778889999999999999  999999999999999999987      45555554321   111100   


Q ss_pred             --------ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          164 --------RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       164 --------~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                              ......+.+++|+|++.     +|++|+.|     +.|++||+++....    ..+  ..+|...|++++|+
T Consensus       236 ~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~d-----g~i~i~d~~~~~~~----~~~--~~~~~~~v~~~~~~  299 (420)
T 3vl1_A          236 VGTDRQLHEISTSKKNNLEFGTYGK-----YVIAGHVS-----GVITVHNVFSKEQT----IQL--PSKFTCSCNSLTVD  299 (420)
T ss_dssp             ECCCSSCGGGCCCCCCTTCSSCTTE-----EEEEEETT-----SCEEEEETTTCCEE----EEE--CCTTSSCEEEEEEC
T ss_pred             cCCcceeeecccCcccceEEcCCCC-----EEEEEcCC-----CeEEEEECCCCcee----EEc--ccccCCCceeEEEe
Confidence                    00012334667778776     89999998     99999999775422    111  23577899999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      |++.
T Consensus       300 ~~~~  303 (420)
T 3vl1_A          300 GNNA  303 (420)
T ss_dssp             SSCT
T ss_pred             CCCC
Confidence            9975

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=2.5e-27  Score=184.44  Aligned_cols=184  Identities=18%  Similarity=0.254  Sum_probs=155.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|...|.+++|+|++++|++++.|+.|++|++...   .......+..|...|.+++|+|+  ++++++++.|+.|++||
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v~~~d  169 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---TPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---CcceeeecccCCCceEEEEECCC--CCEEEEEeCCCcEEEEe
Confidence            68889999999999999999999999999999843   33466777889999999999999  99999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      ++.+       +.+..+..|...+.+++|+|  ++.+|++++.||.|++||+++      .+....+. +...+.     
T Consensus       170 ~~~~-------~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~-~~~~v~-----  228 (337)
T 1gxr_A          170 LHNQ-------TLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLRE------GRQLQQHD-FTSQIF-----  228 (337)
T ss_dssp             TTTT-------EEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT------TEEEEEEE-CSSCEE-----
T ss_pred             CCCC-------ceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCC------CceEeeec-CCCceE-----
Confidence            9776       78888888999999999999  999999999999999999987      34444432 333344     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                           +++|+|++.     +|++++.+     +.|++|++.+...     ..+.   .|...|++++|+|++.
T Consensus       229 -----~~~~s~~~~-----~l~~~~~~-----~~i~~~~~~~~~~-----~~~~---~~~~~v~~~~~~~~~~  278 (337)
T 1gxr_A          229 -----SLGYCPTGE-----WLAVGMES-----SNVEVLHVNKPDK-----YQLH---LHESCVLSLKFAYCGK  278 (337)
T ss_dssp             -----EEEECTTSS-----EEEEEETT-----SCEEEEETTSSCE-----EEEC---CCSSCEEEEEECTTSS
T ss_pred             -----EEEECCCCC-----EEEEEcCC-----CcEEEEECCCCCe-----EEEc---CCccceeEEEECCCCC
Confidence                 899999987     89999998     9999999977541     1222   4777999999999874

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.96  E-value=1.6e-27  Score=185.49  Aligned_cols=188  Identities=14%  Similarity=0.257  Sum_probs=154.6

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ..|.+.|++++|+|++++|++++ ||.|++|++.....  ...+..+.  .|...|.+++|+|+  ++++++++.|+.|+
T Consensus        48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--KSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLS  122 (337)
T ss_dssp             ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--CSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEE
T ss_pred             ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--eeeeecccccCCCCcEEEEEEcCC--CCEEEEEcCCCcEE
Confidence            46899999999999999999999 99999999975421  11222333  78899999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||+..+..     .....+..+...|.+++|+|  ++.++++++.||.|++||+++      .+....+..+...+.  
T Consensus       123 ~~d~~~~~~-----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~~~d~~~------~~~~~~~~~~~~~i~--  187 (337)
T 1gxr_A          123 IWDLAAPTP-----RIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGAS--  187 (337)
T ss_dssp             EEECCCC-------EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEE--
T ss_pred             EEECCCCCc-----ceeeecccCCCceEEEEECC--CCCEEEEEeCCCcEEEEeCCC------CceeeeeecccCceE--
Confidence            999987521     36677778889999999999  999999999999999999987      566667777766666  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                              +++|+|++.     +|++++.|     +.|++||+++...    ...+    .|...+.+++|+|++.
T Consensus       188 --------~~~~~~~~~-----~l~~~~~d-----g~i~~~d~~~~~~----~~~~----~~~~~v~~~~~s~~~~  237 (337)
T 1gxr_A          188 --------CIDISNDGT-----KLWTGGLD-----NTVRSWDLREGRQ----LQQH----DFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             --------EEEECTTSS-----EEEEEETT-----SEEEEEETTTTEE----EEEE----ECSSCEEEEEECTTSS
T ss_pred             --------EEEECCCCC-----EEEEEecC-----CcEEEEECCCCce----Eeee----cCCCceEEEEECCCCC
Confidence                    999999887     89999998     9999999977542    2222    2556899999999874

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.5e-27  Score=190.93  Aligned_cols=182  Identities=15%  Similarity=0.258  Sum_probs=153.8

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      |...|.+++|+|++++|++|+.||.|++||+.     +.+.+..+.+|...|.+++|  +  +.++++++.|+.|++||+
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i~d~  203 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE-----SQTKLRTMAGHQARVGCLSW--N--RHVLSSGSRSGAIHHHDV  203 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETT-----TCCEEEEECCCSSCEEEEEE--E--TTEEEEEETTSEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECc-----CCeEEEEecCCCCceEEEEE--C--CCEEEEEcCCCCEEEEec
Confidence            78899999999999999999999999999998     55678888899999999999  4  678999999999999999


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      +...      .....+..|...|.+++|+|  ++.+|++++.||.|++||+++      .+....+..+...+.      
T Consensus       204 ~~~~------~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~------~~~~~~~~~~~~~v~------  263 (401)
T 4aez_A          204 RIAN------HQIGTLQGHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARS------SIPKFTKTNHNAAVK------  263 (401)
T ss_dssp             TSSS------CEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTC------SSEEEEECCCSSCCC------
T ss_pred             ccCc------ceeeEEcCCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCC------CCccEEecCCcceEE------
Confidence            7432      67788888999999999999  999999999999999999987      456666666766666      


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEe--cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGF--NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~--~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                          +++|+|++..    ++++++  .|     +.|++||+.++..    ...+.    |...|++++|+|++.
T Consensus       264 ----~~~~~p~~~~----ll~~~~gs~d-----~~i~i~d~~~~~~----~~~~~----~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          264 ----AVAWCPWQSN----LLATGGGTMD-----KQIHFWNAATGAR----VNTVD----AGSQVTSLIWSPHSK  316 (401)
T ss_dssp             ----EEEECTTSTT----EEEEECCTTT-----CEEEEEETTTCCE----EEEEE----CSSCEEEEEECSSSS
T ss_pred             ----EEEECCCCCC----EEEEecCCCC-----CEEEEEECCCCCE----EEEEe----CCCcEEEEEECCCCC
Confidence                9999998752    777765  56     9999999987542    23332    455899999999874

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.96  E-value=1.3e-27  Score=191.92  Aligned_cols=186  Identities=16%  Similarity=0.239  Sum_probs=147.4

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|.+.|++++|+|++++|++|+.|+.|++||+.     +.+.+..+.+|...|.+++|+|+  +.+|++++.|+.|++
T Consensus       135 ~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~i  207 (420)
T 3vl1_A          135 DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-----DGSNPRTLIGHRATVTDIAIIDR--GRNVLSASLDGTIRL  207 (420)
T ss_dssp             TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TCCCCEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEE
T ss_pred             cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-----CCcCceEEcCCCCcEEEEEEcCC--CCEEEEEcCCCcEEE
Confidence            56899999999999999999999999999999998     44567788899999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeee---ccccE---------------------EeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           85 WEEIVEDAQPLQWKLCKSFES---TSTQV---------------------LDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~---~~~~v---------------------~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ||++.+       +.+..+..   +...+                     .+++|+|  ++.+|++++.||.|++||+++
T Consensus       208 wd~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~  278 (420)
T 3vl1_A          208 WECGTG-------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT--YGKYVIAGHVSGVITVHNVFS  278 (420)
T ss_dssp             EETTTT-------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC--TTEEEEEEETTSCEEEEETTT
T ss_pred             eECCCC-------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC--CCCEEEEEcCCCeEEEEECCC
Confidence            999776       66666653   33344                     4455566  889999999999999999987


Q ss_pred             cccccceeEEeeee-cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEee
Q 026295          141 PLILKNWQLQAEFQ-NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL  219 (240)
Q Consensus       141 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~  219 (240)
                            .+....+. .+...+.          +++|+|++..    +|++|+.|     +.|++||+++....   ...+
T Consensus       279 ------~~~~~~~~~~~~~~v~----------~~~~~~~~~~----~l~~g~~d-----g~i~vwd~~~~~~~---~~~~  330 (420)
T 3vl1_A          279 ------KEQTIQLPSKFTCSCN----------SLTVDGNNAN----YIYAGYEN-----GMLAQWDLRSPECP---VGEF  330 (420)
T ss_dssp             ------CCEEEEECCTTSSCEE----------EEEECSSCTT----EEEEEETT-----SEEEEEETTCTTSC---SEEE
T ss_pred             ------CceeEEcccccCCCce----------eEEEeCCCCC----EEEEEeCC-----CeEEEEEcCCCcCc---hhhh
Confidence                  33333332 3444454          9999999753    79999998     99999999876542   2222


Q ss_pred             ecCCCCCCceEEEEEec
Q 026295          220 ALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       220 ~~~~~h~~~v~~v~~sp  236 (240)
                      ..  .|...|+++.|.+
T Consensus       331 ~~--~~~~~v~~~~~~~  345 (420)
T 3vl1_A          331 LI--NEGTPINNVYFAA  345 (420)
T ss_dssp             EE--STTSCEEEEEEET
T ss_pred             hc--cCCCCceEEEeCC
Confidence            22  2666899986653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8e-29  Score=204.01  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=133.1

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEE--EEcCCCCC-CEEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKV--VWVPPEFG-DAVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~-~~l~s~~~d~   80 (240)
                      .+..|...|++++|++++ +|++|+.||+|++||+....    .+...+.+|...|.+|  .|+|+  + .+|++++.|+
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~----~~~~~~~~H~~~V~sv~~~~s~~--g~~~laS~S~D~  333 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE----VPSFYDQVHDSYILSVSTAYSDF--EDTVVSTVAVDG  333 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS----SCSEEEECSSSCEEEEEEECCTT--SCCEEEEEETTS
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC----CceEEeecccccEEEEEEEcCCC--CCeEEEEeccCC
Confidence            356788999999999864 89999999999999997321    2344578899999999  56776  7 8999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccc--cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTST--QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +|+|||++..       +++..+.+|..  .|.+++|+|  ++..+++++.|++|++||++.      ..+...+..|..
T Consensus       334 tvklWD~~~~-------~~~~~~~~~~~~~~v~~v~fsp--~~~~l~s~~~d~tv~lwd~~~------~~~~~~l~gH~~  398 (524)
T 2j04_B          334 YFYIFNPKDI-------ATTKTTVSRFRGSNLVPVVYCP--QIYSYIYSDGASSLRAVPSRA------AFAVHPLVSRET  398 (524)
T ss_dssp             EEEEECGGGH-------HHHCEEEEECSCCSCCCEEEET--TTTEEEEECSSSEEEEEETTC------TTCCEEEEECSS
T ss_pred             eEEEEECCCC-------CcccccccccccCcccceEeCC--CcCeEEEeCCCCcEEEEECcc------cccceeeecCCC
Confidence            9999999765       44445555542  478999999  899999999999999999987      344456667777


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      .|.          +|+|+|++.     +|++|+.|     ++|+||++.
T Consensus       399 ~V~----------sva~Sp~g~-----~l~Sgs~D-----gtv~lwd~~  427 (524)
T 2j04_B          399 TIT----------AIGVSRLHP-----MVLAGSAD-----GSLIITNAA  427 (524)
T ss_dssp             CEE----------EEECCSSCC-----BCEEEETT-----TEEECCBSC
T ss_pred             ceE----------EEEeCCCCC-----eEEEEECC-----CEEEEEech
Confidence            776          999999987     89999999     999999864

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.5e-28  Score=196.36  Aligned_cols=206  Identities=10%  Similarity=0.026  Sum_probs=136.6

Q ss_pred             hhcccccceEEEEECC--------CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCC-CEEE
Q 026295            4 AVATLDKGTTSSSWNY--------CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG-DAVA   74 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~--------~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~   74 (240)
                      .+.+|.+.|++++|+|        ++++||+|+.|++|+|||+.     +..++..+..|...|.+++|+|+  + .+|+
T Consensus       131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~-----~~~~~~~~~~~~~~v~~v~~~p~--~~~~l~  203 (393)
T 4gq1_A          131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT-----DEGPILAGYPLSSPGISVQFRPS--NPNQLI  203 (393)
T ss_dssp             TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE-----TTEEEEEEEECSSCEEEEEEETT--EEEEEE
T ss_pred             ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC-----CCceeeeecCCCCCcEEEEECCC--CCceEE
Confidence            4678999999999998        78999999999999999997     44566777789999999999998  6 5899


Q ss_pred             EEecCCeEEEEEeeeccCCC---------cccE---------EEEEeeeccccEEeEEEe-ecCCCcEEEEEeCCCcEEE
Q 026295           75 CICSDGSLLLWEEIVEDAQP---------LQWK---------LCKSFESTSTQVLDVQFG-VSSTSLKLVAAYSDGHVKV  135 (240)
Q Consensus        75 s~~~d~~v~iwd~~~~~~~~---------~~~~---------~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~i  135 (240)
                      +++.|++|++||++.+....         ..|.         ......++...+.++.|+ |  ++..+++++.|+++++
T Consensus       204 ~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~--dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          204 VGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGS--DGSGILAMCKSGAWLR  281 (393)
T ss_dssp             EEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETT--TTCEEEEECTTSEEEE
T ss_pred             ecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecC--CCCEEEEEeCCCCEEE
Confidence            99999999999987652100         0000         011123466788899997 5  8899999999999999


Q ss_pred             EEecCcccccceeEEeeeecccceee-----cccc---ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          136 YELLDPLILKNWQLQAEFQNAIDSVT-----MFRK---ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       136 w~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~---~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                      ||+...      .....+..+...+.     +...   .........|+|...   +.++++|+.|     +.|+|||..
T Consensus       282 wd~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~sgs~D-----g~V~lwd~~  347 (393)
T 4gq1_A          282 WNLFAN------NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYM---DYFATAHSQH-----GLIQLINTY  347 (393)
T ss_dssp             EEC-------------------------CCSCSEEEECSSCCSSCCEECSSCT---TEEEEEETTT-----TEEEEEETT
T ss_pred             EECccC------CCCceEeeecCccccEEEccccccccccCcceeEEEccCCC---CEEEEEECCC-----CEEEEEECC
Confidence            999763      22222222211111     0000   000111344555443   3355566666     999999998


Q ss_pred             cCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          208 EAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       208 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ++......    .   +|..+|++|+||||+.
T Consensus       348 ~~~~~~~~----~---~~~~~V~svafspdG~  372 (393)
T 4gq1_A          348 EKDSNSIP----I---QLGMPIVDFCWHQDGS  372 (393)
T ss_dssp             CTTCCEEE----E---ECSSCEEEEEECTTSS
T ss_pred             CCcEEEEe----c---CCCCcEEEEEEcCCCC
Confidence            76543222    2   3667999999999984

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.96  E-value=3.1e-27  Score=212.58  Aligned_cols=165  Identities=20%  Similarity=0.319  Sum_probs=149.6

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +.+|.+.|++++|+|+|++|++|+.||+|+|||+.     +.+.+..+.+|.+.|.+++|+|+  +.++++++.|+.|++
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~-----~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~d~~v~v  683 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE-----TGEKLLDIKAHEDEVLCCAFSSD--DSYIATCSADKKVKI  683 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TCCEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECC-----CCCEEEEeccCCCCEEEEEEecC--CCEEEEEeCCCeEEE
Confidence            45799999999999999999999999999999998     66788889999999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||+.++       +.+..+..|...|.+++|+|..++.++++++.|+.|++||+.+      ..+...+..|...+.   
T Consensus       684 wd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~------~~~~~~~~~h~~~v~---  747 (1249)
T 3sfz_A          684 WDSATG-------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ------KECRNTMFGHTNSVN---  747 (1249)
T ss_dssp             EETTTC-------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS------SSEEEEECCCSSCEE---
T ss_pred             EECCCC-------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC------cchhheecCCCCCEE---
Confidence            999876       8889999999999999999855566899999999999999987      566777777777776   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                             +++|+|++.     +|++++.|     +.|++||+.+.
T Consensus       748 -------~~~~sp~~~-----~l~s~s~d-----g~v~vwd~~~~  775 (1249)
T 3sfz_A          748 -------HCRFSPDDE-----LLASCSAD-----GTLRLWDVRSA  775 (1249)
T ss_dssp             -------EEEECSSTT-----EEEEEESS-----SEEEEEEGGGT
T ss_pred             -------EEEEecCCC-----EEEEEECC-----CeEEEEeCCCC
Confidence                   999999987     89999999     99999998765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=3.6e-27  Score=188.70  Aligned_cols=191  Identities=14%  Similarity=0.164  Sum_probs=151.4

Q ss_pred             hhcccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe--eecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKT--KVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+..|...|.+++|+|++ ++|++++.|+.|+|||+.     +.+.+..+  ..|...|.+++|+|+  +.+|++++.|+
T Consensus       126 ~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~  198 (402)
T 2aq5_A          126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-----TGAAVLTLGPDVHPDTIYSVDWSRD--GALICTSCRDK  198 (402)
T ss_dssp             EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-----TTEEEEEECTTTCCSCEEEEEECTT--SSCEEEEETTS
T ss_pred             EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-----CCCccEEEecCCCCCceEEEEECCC--CCEEEEEecCC
Confidence            366799999999999998 699999999999999998     55777788  789999999999999  99999999999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEe-eecccc-EEeEEEeecCCCcEEEEE---eCCCcEEEEEecCcccccceeEEeeee-
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSF-ESTSTQ-VLDVQFGVSSTSLKLVAA---YSDGHVKVYELLDPLILKNWQLQAEFQ-  154 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~l~~~---~~dg~v~iw~~~~~~~~~~~~~~~~~~-  154 (240)
                      .|++||++.+       +.+..+ ..|... +..+.|+|  ++.+|+++   +.|+.|++||++....     ...... 
T Consensus       199 ~i~iwd~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~~~~d~~i~iwd~~~~~~-----~~~~~~~  264 (402)
T 2aq5_A          199 RVRVIEPRKG-------TVVAEKDRPHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWDTKHLEE-----PLSLQEL  264 (402)
T ss_dssp             EEEEEETTTT-------EEEEEEECSSCSSSCCEEEECS--TTEEEEEEECTTCCEEEEEEETTBCSS-----CSEEEEC
T ss_pred             cEEEEeCCCC-------ceeeeeccCCCCCcceEEEEcC--CCcEEEEeccCCCCceEEEEcCccccC-----CceEEec
Confidence            9999999876       777777 566655 89999999  99999998   7899999999986321     111111 


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEe-cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~-~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                      .+...+.          +++|+|++.     +|++++ .|     +.|++|++.+......   .+..+. |...|++++
T Consensus       265 ~~~~~v~----------~~~~s~~~~-----~l~~~g~~d-----g~i~i~d~~~~~~~~~---~l~~~~-~~~~v~~~~  320 (402)
T 2aq5_A          265 DTSSGVL----------LPFFDPDTN-----IVYLCGKGD-----SSIRYFEITSEAPFLH---YLSMFS-SKESQRGMG  320 (402)
T ss_dssp             CCCSSCE----------EEEEETTTT-----EEEEEETTC-----SCEEEEEECSSTTCEE---EEEEEC-CSSCCSEEE
T ss_pred             cCCCcee----------EEEEcCCCC-----EEEEEEcCC-----CeEEEEEecCCCcceE---eecccc-cCCcccceE
Confidence            2223333          899999987     676554 56     9999999987653222   223333 667999999


Q ss_pred             EecCCC
Q 026295          234 WALNIG  239 (240)
Q Consensus       234 ~sp~~~  239 (240)
                      |+|++.
T Consensus       321 ~sp~~~  326 (402)
T 2aq5_A          321 YMPKRG  326 (402)
T ss_dssp             ECCGGG
T ss_pred             Eecccc
Confidence            999864

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=3.1e-27  Score=190.83  Aligned_cols=204  Identities=16%  Similarity=0.272  Sum_probs=158.2

Q ss_pred             hcccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCC--cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            5 VATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSS--SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      +..|...|.+++|+|+++ +|++|+.||.|++|++......  .......+..|...|.+++|+|. .+.+|++++.|+.
T Consensus       177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~  255 (430)
T 2xyi_A          177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQK  255 (430)
T ss_dssp             EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSE
T ss_pred             ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCe
Confidence            567899999999999998 9999999999999999853211  12234566789999999999994 1789999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      |++||++....    ..++..+..|...|++++|+|  ++. ++++++.||.|++||++..     ...+..+..|...+
T Consensus       256 i~i~d~~~~~~----~~~~~~~~~~~~~v~~i~~~p--~~~~~l~tg~~dg~v~vwd~~~~-----~~~~~~~~~h~~~v  324 (430)
T 2xyi_A          256 LMIWDTRNNNT----SKPSHTVDAHTAEVNCLSFNP--YSEFILATGSADKTVALWDLRNL-----KLKLHSFESHKDEI  324 (430)
T ss_dssp             EEEEETTCSCS----SSCSEEEECCSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCT-----TSCSEEEECCSSCE
T ss_pred             EEEEECCCCCC----CcceeEeecCCCCeEEEEeCC--CCCCEEEEEeCCCeEEEEeCCCC-----CCCeEEeecCCCCE
Confidence            99999986421    135566678889999999999  776 6889999999999999863     23455666666666


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc-------eeEeeecCCCCCCceEEEE
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL-------PVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~-------~~~~~~~~~~h~~~v~~v~  233 (240)
                      .          +++|+|++..    +|++++.|     +.|+|||+........       ....+..+.+|...|++++
T Consensus       325 ~----------~i~~sp~~~~----~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  385 (430)
T 2xyi_A          325 F----------QVQWSPHNET----ILASSGTD-----RRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  385 (430)
T ss_dssp             E----------EEEECSSCTT----EEEEEETT-----SCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE
T ss_pred             E----------EEEECCCCCC----EEEEEeCC-----CcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE
Confidence            6          9999999842    78999998     9999999987432210       0012234457888999999


Q ss_pred             EecCCC
Q 026295          234 WALNIG  239 (240)
Q Consensus       234 ~sp~~~  239 (240)
                      |+|++.
T Consensus       386 ~~p~~~  391 (430)
T 2xyi_A          386 WNPNEP  391 (430)
T ss_dssp             ECSSST
T ss_pred             ECCCCC
Confidence            999874

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.96  E-value=7.4e-27  Score=185.58  Aligned_cols=172  Identities=16%  Similarity=0.051  Sum_probs=139.5

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            6 ATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         6 ~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ..|.+.|.+++|+| ++++|++++.|+.|++||+...   ..........|...|.+++|+|+  +.+|++++.|+.|++
T Consensus       115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i  189 (383)
T 3ei3_B          115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVFAKTDSWDYWYCCVDVSVS--RQMLATGDSTGRLLL  189 (383)
T ss_dssp             CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC---EEEEEECCCCSSCCEEEEEEETT--TTEEEEEETTSEEEE
T ss_pred             CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC---ceEEEeccCCCCCCeEEEEECCC--CCEEEEECCCCCEEE
Confidence            35899999999999 7899999999999999999842   22233333345588999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||++ +       +++..+..|...|.+++|+|  ++. +|++++.|+.|++||+++....  ..+...+ .+...+.  
T Consensus       190 ~d~~-~-------~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~-~~~~~v~--  254 (383)
T 3ei3_B          190 LGLD-G-------HEIFKEKLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDK--NSYIAEM-PHEKPVN--  254 (383)
T ss_dssp             EETT-S-------CEEEEEECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCST--TCEEEEE-ECSSCEE--
T ss_pred             EECC-C-------CEEEEeccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcc--cceEEEe-cCCCceE--
Confidence            9994 3       67888889999999999999  888 8999999999999999863221  2333333 4555555  


Q ss_pred             ccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          164 RKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       164 ~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                              +++|+| ++.     +|++++.|     +.|++||+.+.......
T Consensus       255 --------~~~~s~~~~~-----~l~~~~~d-----~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          255 --------AAYFNPTDST-----KLLTTDQR-----NEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             --------EEEECTTTSC-----EEEEEESS-----SEEEEEETTBTTSCSEE
T ss_pred             --------EEEEcCCCCC-----EEEEEcCC-----CcEEEEECCCCcccccc
Confidence                    999999 877     89999998     99999999887654333

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.2e-27  Score=193.22  Aligned_cols=204  Identities=13%  Similarity=0.223  Sum_probs=156.2

Q ss_pred             hcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCC-----CcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEe
Q 026295            5 VATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSS-----SSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACIC   77 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~   77 (240)
                      ...|.+.|++++|+|+ +.+||+++.||.|+||++.....     +....+..+.+|...|.+++|+|.  +. +|++++
T Consensus       124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~  201 (430)
T 2xyi_A          124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPN--LNGYLLSAS  201 (430)
T ss_dssp             EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTT--STTEEEEEC
T ss_pred             EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCC--CCCeEEEEe
Confidence            4568999999999997 68999999999999999974100     024567778899999999999998  77 999999


Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .||.|++|++...............+..|...|.+++|+|. ++.+|++++.||.|++||+++...   ......+..|.
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~---~~~~~~~~~~~  277 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNT---SKPSHTVDAHT  277 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCS---SSCSEEEECCS
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCC---CcceeEeecCC
Confidence            99999999997632111112234566788899999999883 456789999999999999986311   13344445565


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ..+.          +++|+|++..    +|++|+.|     +.|++||++.....   ...+.   +|...|++++|+|+
T Consensus       278 ~~v~----------~i~~~p~~~~----~l~tg~~d-----g~v~vwd~~~~~~~---~~~~~---~h~~~v~~i~~sp~  332 (430)
T 2xyi_A          278 AEVN----------CLSFNPYSEF----ILATGSAD-----KTVALWDLRNLKLK---LHSFE---SHKDEIFQVQWSPH  332 (430)
T ss_dssp             SCEE----------EEEECSSCTT----EEEEEETT-----SEEEEEETTCTTSC---SEEEE---CCSSCEEEEEECSS
T ss_pred             CCeE----------EEEeCCCCCC----EEEEEeCC-----CeEEEEeCCCCCCC---eEEee---cCCCCEEEEEECCC
Confidence            5555          9999998752    78899998     99999999874322   23333   47779999999998


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       333 ~~  334 (430)
T 2xyi_A          333 NE  334 (430)
T ss_dssp             CT
T ss_pred             CC
Confidence            73

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.2e-27  Score=201.12  Aligned_cols=204  Identities=19%  Similarity=0.336  Sum_probs=163.6

Q ss_pred             hhcccccceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            4 AVATLDKGTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+..|.+.|++++|+++  +++|++|+.||.|++||+...   ....+..+.+|...|.+++|+|+..+.++++++.||.
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~---~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~  124 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK  124 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT---EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC---cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCc
Confidence            46679999999999988  999999999999999999843   3447778889999999999998633689999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-----------CCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-----------TSLKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      |++||+.....     .....+..|...|.+++|+|..           ++.++++++.||.|++||++.....  ..+.
T Consensus       125 I~vwdl~~~~~-----~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~--~~~~  197 (753)
T 3jro_A          125 VSVVEFKENGT-----TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT--YVLE  197 (753)
T ss_dssp             EEEEECCSSSC-----CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--EEEE
T ss_pred             EEEEEeecCCC-----cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--ceee
Confidence            99999976532     3344566788999999999821           3788999999999999999874222  3556


Q ss_pred             eeeecccceeeccccccceeeeEEEeCC---CCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQ---KGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD  227 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~---~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~  227 (240)
                      ..+..|...+.          +++|+|+   +.     +|++|+.|     +.|++||+.+.......  .+....+|..
T Consensus       198 ~~~~~h~~~V~----------~l~~sp~~~~~~-----~l~s~s~D-----g~I~iwd~~~~~~~~~~--~~~~~~~~~~  255 (753)
T 3jro_A          198 STLEGHSDWVR----------DVAWSPTVLLRS-----YLASVSQD-----RTCIIWTQDNEQGPWKK--TLLKEEKFPD  255 (753)
T ss_dssp             EEECCCSSCEE----------EEEECCCCSSSE-----EEEEEESS-----SCEEEEEESSSSSCCBC--CBSSSSCCSS
T ss_pred             eeecCCCCcEE----------EEEeccCCCCCC-----EEEEEecC-----CEEEEecCCCCCCccee--EEeccCCCCC
Confidence            66677777776          9999999   55     89999999     99999999886533221  1223345888


Q ss_pred             ceEEEEEecCCC
Q 026295          228 EVYAVAWALNIG  239 (240)
Q Consensus       228 ~v~~v~~sp~~~  239 (240)
                      .|++++|+|++.
T Consensus       256 ~v~~l~~spdg~  267 (753)
T 3jro_A          256 VLWRASWSLSGN  267 (753)
T ss_dssp             CCCCEEECTTTC
T ss_pred             ceEEEEEcCCCC
Confidence            999999999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.9e-27  Score=191.62  Aligned_cols=185  Identities=13%  Similarity=0.088  Sum_probs=142.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc-----cEEEEEEcCCCCCCEEEEEecCCe
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG-----AILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .|++.|.+++|||+|++||+++.||.|+||+..     .  ++..+. |..     .|.+++|+|+  |++|++++.||+
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-----~--~l~~l~-~~~~~~~~sv~svafSPD--G~~LAsgs~DGt  152 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-----K--MLTNLD-SKGNLSSRTYHCFEWNPI--ESSIVVGNEDGE  152 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-----E--EEEECC-CSSCSTTTCEEEEEECSS--SSCEEEEETTSE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-----c--eeeecc-CCCccccccEEEEEEcCC--CCEEEEEcCCCE
Confidence            467889999999999999999999999999965     2  566666 665     4999999999  999999999999


Q ss_pred             EEEEEeeeccCCCcccEEEEEe----eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee-cc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSF----ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ-NA  156 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~-~~  156 (240)
                      |++||+..+.-.++.+-.+.++    .+|...|.+++|+|  +|  +++++.|++|++|++.....   .+....+. .|
T Consensus       153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP--dg--Laass~D~tVrlWd~~~~~~---~~~~~tL~~~h  225 (588)
T 2j04_A          153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE--DV--LVAALSNNSVFSMTVSASSH---QPVSRMIQNAS  225 (588)
T ss_dssp             EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET--TE--EEEEETTCCEEEECCCSSSS---CCCEEEEECCC
T ss_pred             EEEEECCCCccccccceeeeeeecccccccccEEEEEEcC--Cc--EEEEeCCCeEEEEECCCCcc---ccceeeecccc
Confidence            9999998652111222356776    45678999999999  88  88899999999999976310   01223443 45


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE--
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW--  234 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--  234 (240)
                      ...|.          +++|+  +.     +||+++ +     +.|++|++.+....     .+. . +|.+.|++++|  
T Consensus       226 ~~~V~----------svaFs--g~-----~LASa~-~-----~tIkLWd~~~~~~~-----~~~-~-gh~~~V~~va~~~  275 (588)
T 2j04_A          226 RRKIT----------DLKIV--DY-----KVVLTC-P-----GYVHKIDLKNYSIS-----SLK-T-GSLENFHIIPLNH  275 (588)
T ss_dssp             SSCCC----------CEEEE--TT-----EEEEEC-S-----SEEEEEETTTTEEE-----EEE-C-SCCSCCCEEEETT
T ss_pred             cCcEE----------EEEEE--CC-----EEEEEe-C-----CeEEEEECCCCeEE-----EEE-c-CCCceEEEEEeee
Confidence            55565          99999  34     788887 5     99999998764321     111 1 58889999999  


Q ss_pred             ecCC
Q 026295          235 ALNI  238 (240)
Q Consensus       235 sp~~  238 (240)
                      +||+
T Consensus       276 s~d~  279 (588)
T 2j04_A          276 EKES  279 (588)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            9986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-26  Score=185.32  Aligned_cols=195  Identities=14%  Similarity=0.187  Sum_probs=156.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC---------------------------------------
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS---------------------------------------   44 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~---------------------------------------   44 (240)
                      .+..|...|.+++|+|++++|++++.|+.|++||+......                                       
T Consensus       144 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (425)
T 1r5m_A          144 VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP  223 (425)
T ss_dssp             EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEE
T ss_pred             eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE
Confidence            46678999999999999999999999999999998632100                                       


Q ss_pred             ------------cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEe
Q 026295           45 ------------SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLD  112 (240)
Q Consensus        45 ------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~  112 (240)
                                  ..+.+..+..|...|.+++|+|+  +.+|++++.|+.|++||+...       +.+..+..+...|.+
T Consensus       224 ~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~i~~  294 (425)
T 1r5m_A          224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT--NKLLLSASDDGTLRIWHGGNG-------NSQNCFYGHSQSIVS  294 (425)
T ss_dssp             CGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT--TTEEEEEETTSCEEEECSSSB-------SCSEEECCCSSCEEE
T ss_pred             cCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC--CCEEEEEcCCCEEEEEECCCC-------ccceEecCCCccEEE
Confidence                        00112234568889999999999  999999999999999999876       667777888899999


Q ss_pred             EEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEec
Q 026295          113 VQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN  192 (240)
Q Consensus       113 ~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~  192 (240)
                      ++|+|  ++ ++++++.|+.|++||+++      .+....+..+...+.          +++|+|++.     +|++++.
T Consensus       295 ~~~~~--~~-~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~i~----------~~~~s~~~~-----~l~~~~~  350 (425)
T 1r5m_A          295 ASWVG--DD-KVISCSMDGSVRLWSLKQ------NTLLALSIVDGVPIF----------AGRISQDGQ-----KYAVAFM  350 (425)
T ss_dssp             EEEET--TT-EEEEEETTSEEEEEETTT------TEEEEEEECTTCCEE----------EEEECTTSS-----EEEEEET
T ss_pred             EEECC--CC-EEEEEeCCCcEEEEECCC------CcEeEecccCCccEE----------EEEEcCCCC-----EEEEEEC
Confidence            99999  88 899999999999999987      566667777666666          999999987     8999999


Q ss_pred             CCCCCCCeEEEEEeecCCCCc----------------ceeEeeecCCCCCC--ceEEEEEecCCC
Q 026295          193 SDTPQLNSSKVWEFDEAHNRW----------------LPVAELALPEDRSD--EVYAVAWALNIG  239 (240)
Q Consensus       193 dd~~~~~~i~iw~~~~~~~~~----------------~~~~~~~~~~~h~~--~v~~v~~sp~~~  239 (240)
                      |     +.|++|++.+.....                .....   ..+|..  .|++++|+|++.
T Consensus       351 d-----g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~~~~  407 (425)
T 1r5m_A          351 D-----GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS---YQSSQDNDYIFDLSWNCAGN  407 (425)
T ss_dssp             T-----SCEEEEECHHHHC--------------CEECCEEEE---ECCTTCCCCEEEEEECTTSS
T ss_pred             C-----CeEEEEECCCCccceeeeecccccccCcccchhhhh---hcCcccCCceEEEEccCCCc
Confidence            8     999999997654110                02233   335755  999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.95  E-value=6e-26  Score=182.72  Aligned_cols=199  Identities=16%  Similarity=0.240  Sum_probs=147.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|.+.|++++|+|+|++||+|+.||.|+|||+.     +.+++..+.+|...+.++.|  +  +.++++++.|+.+++
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~-----~~~~~~~~~~h~~~v~~~s~--~--~~~l~sgs~d~~i~~  213 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-----QQKRLRNMTSHSARVGSLSW--N--SYILSSGSRSGHIHH  213 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEE--E--TTEEEEEETTSEEEE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC-----CCcEEEEEeCCCCceEEEee--C--CCEEEEEeCCCceeE
Confidence            34577889999999999999999999999999998     66888999999999999887  3  678999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee---
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT---  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~---  161 (240)
                      ||.....      ..+..+..|...+..+.|+|  ++.++++++.|+.|++|+........  ........+...+.   
T Consensus       214 ~d~~~~~------~~~~~~~~h~~~~~~~~~~~--~g~~l~s~~~D~~v~i~~~~~~~~~~--~~~~~~~~~~~~V~~~~  283 (420)
T 4gga_A          214 HDVRVAE------HHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGW--VPLQTFTQHQGAVKAVA  283 (420)
T ss_dssp             EETTSSS------CEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCCSSCS--CCSEEECCCSSCEEEEE
T ss_pred             eeecccc------eeeEEecccccceeeeeecC--CCCeeeeeeccccceEEeeccccccc--eeeeeecccCCceeeee
Confidence            9987542      56778889999999999999  99999999999999999987532211  11111111111111   


Q ss_pred             --cc---------c--------------------cccceeeeEEEeCCCCCCCCceEEEEe--cCCCCCCCeEEEEEeec
Q 026295          162 --MF---------R--------------------KASCISASISWNPQKGENQGSSFVLGF--NSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       162 --~~---------~--------------------~~~~~~~~v~~~p~~~~~~~~~l~~~~--~dd~~~~~~i~iw~~~~  208 (240)
                        +.         +                    .....+.++.|+|++.     .|++++  .|     +.|+|||+.+
T Consensus       284 ~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~-----~lv~~sg~~d-----~~I~iwd~~~  353 (420)
T 4gga_A          284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-----ELISGHGFAQ-----NQLVIWKYPT  353 (420)
T ss_dssp             ECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT-----EEEEEECTTT-----CCEEEEETTT
T ss_pred             eCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC-----eEEEEEecCC-----CEEEEEECCC
Confidence              00         0                    0011334666777765     454443  45     8888888876


Q ss_pred             CCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          209 AHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       209 ~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ..    ....+.   +|.+.|++|+|+||+.
T Consensus       354 ~~----~v~~l~---gH~~~V~~l~~spdg~  377 (420)
T 4gga_A          354 MA----KVAELK---GHTSRVLSLTMSPDGA  377 (420)
T ss_dssp             CC----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             Cc----EEEEEc---CCCCCEEEEEEcCCCC
Confidence            43    334444   6888999999999985

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=184.08  Aligned_cols=201  Identities=16%  Similarity=0.277  Sum_probs=153.0

Q ss_pred             hhcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCc-EEEEe--E-----eeecCccEEEEEEcC-CCCCCEE
Q 026295            4 AVATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSS-FTCNL--K-----TKVHAGAILKVVWVP-PEFGDAV   73 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~--~-----~~~h~~~v~~~~~~~-~~~~~~l   73 (240)
                      .+..|.+.|++++|+| ++++|++|+.||.|+||++....... .....  .     ..+|...|.+++|+| +  +.+|
T Consensus        38 ~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l  115 (408)
T 4a11_B           38 VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHD--TGMF  115 (408)
T ss_dssp             ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTC--TTCE
T ss_pred             eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCC--CcEE
Confidence            3567999999999999 99999999999999999998542111 11000  0     025899999999999 5  7899


Q ss_pred             EEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-CCcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           74 ACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        74 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      ++++.|+.|++||+..+       +....+. +...+.++.|+|.. ++.++++++.||.|++||+++      .+....
T Consensus       116 ~s~~~d~~i~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------~~~~~~  181 (408)
T 4a11_B          116 TSSSFDKTLKVWDTNTL-------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS------GSCSHI  181 (408)
T ss_dssp             EEEETTSEEEEEETTTT-------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS------SCCCEE
T ss_pred             EEEeCCCeEEEeeCCCC-------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC------cceeee
Confidence            99999999999999876       6666665 56788999998732 344899999999999999987      455566


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCccee---------EeeecCC
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPV---------AELALPE  223 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~---------~~~~~~~  223 (240)
                      +..|...+.          +++|+|++..    +|++|+.|     +.|++||++.........         .......
T Consensus       182 ~~~~~~~v~----------~~~~~~~~~~----ll~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T 4a11_B          182 LQGHRQEIL----------AVSWSPRYDY----ILATASAD-----SRVKLWDVRRASGCLITLDQHNGKKSQAVESANT  242 (408)
T ss_dssp             ECCCCSCEE----------EEEECSSCTT----EEEEEETT-----SCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSC
T ss_pred             ecCCCCcEE----------EEEECCCCCc----EEEEEcCC-----CcEEEEECCCCCcccccccccccccceeeccccc
Confidence            667776666          9999999862    58899998     999999997754221111         0011123


Q ss_pred             CCCCceEEEEEecCCC
Q 026295          224 DRSDEVYAVAWALNIG  239 (240)
Q Consensus       224 ~h~~~v~~v~~sp~~~  239 (240)
                      +|...|++++|+|++.
T Consensus       243 ~~~~~v~~~~~~~~~~  258 (408)
T 4a11_B          243 AHNGKVNGLCFTSDGL  258 (408)
T ss_dssp             SCSSCEEEEEECTTSS
T ss_pred             cccCceeEEEEcCCCC
Confidence            5888999999999874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=1.2e-27  Score=193.42  Aligned_cols=169  Identities=12%  Similarity=0.019  Sum_probs=133.4

Q ss_pred             hcccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +.+|.+.|++++|+| ++++|++|+.||+|+|||+...   ..........+...+.+++|+|+  +.+|++++.|+.|+
T Consensus       160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~dg~i~  234 (435)
T 4e54_B          160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN---ILRVFASSDTINIWFCSLDVSAS--SRMVVTGDNVGNVI  234 (435)
T ss_dssp             CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC---EEEEEECCSSCSCCCCCEEEETT--TTEEEEECSSSBEE
T ss_pred             ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC---ceeEEeccCCCCccEEEEEECCC--CCEEEEEeCCCcEe
Confidence            457999999999998 6899999999999999999732   22222222234456789999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      +||++.        +.+..+..|...|.+++|+|  ++. +|++++.|++|++||++......   .......|...|. 
T Consensus       235 ~wd~~~--------~~~~~~~~h~~~v~~v~~~p--~~~~~~~s~s~d~~v~iwd~~~~~~~~---~~~~~~~h~~~v~-  300 (435)
T 4e54_B          235 LLNMDG--------KELWNLRMHKKKVTHVALNP--CCDWFLATASVDQTVKIWDLRQVRGKA---SFLYSLPHRHPVN-  300 (435)
T ss_dssp             EEESSS--------CBCCCSBCCSSCEEEEEECT--TCSSEEEEEETTSBCCEEETTTCCSSS---CCSBCCBCSSCEE-
T ss_pred             eeccCc--------ceeEEEecccceEEeeeecC--CCceEEEEecCcceeeEEecccccccc---eEEEeeecccccc-
Confidence            999864        55667888999999999998  665 68899999999999998632211   1112234555555 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN  211 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~  211 (240)
                               +++|+|++.     +|++++.|     +.|+|||+.+...
T Consensus       301 ---------~~~~spdg~-----~l~s~~~D-----~~i~iwd~~~~~~  330 (435)
T 4e54_B          301 ---------AACFSPDGA-----RLLTTDQK-----SEIRVYSASQWDC  330 (435)
T ss_dssp             ---------ECCBCTTSS-----EEEEEESS-----SCEEEEESSSSSS
T ss_pred             ---------ceeECCCCC-----eeEEEcCC-----CEEEEEECCCCcc
Confidence                     899999987     89999999     9999999987653

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.95  E-value=8.9e-27  Score=188.38  Aligned_cols=177  Identities=14%  Similarity=0.087  Sum_probs=132.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe-------EeeecCccEEEEEEcCCCCC-CEEEEEe
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNL-------KTKVHAGAILKVVWVPPEFG-DAVACIC   77 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~~   77 (240)
                      ..|...|.+++|+|++++|++| .|+.|+|||+...    .+.+.       .+.+|...|.+++|+|+  + .+|++++
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~s~~  246 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEIT----DRSFNIVDIKPANMEELTEVITAAEFHPN--SCNTFVYSS  246 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEE----EEEEEEEECCCSSGGGCCCCEEEEEECSS--CTTEEEEEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCC----CceeeeeecccccccccCcceEEEEECCC--CCcEEEEEe
Confidence            5799999999999999999999 7999999999821    22333       35589999999999998  8 8999999


Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccc------------cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTST------------QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK  145 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~  145 (240)
                      .|+.|++||++.+...   ......+..+..            .|.+++|+|  ++.+|++++. +.|++||++..    
T Consensus       247 ~dg~i~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~g~~l~~~~~-~~v~iwd~~~~----  316 (447)
T 3dw8_B          247 SKGTIRLCDMRASALC---DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH--SGRYMMTRDY-LSVKVWDLNME----  316 (447)
T ss_dssp             TTSCEEEEETTTCSSS---CTTCEEECCC-----CCHHHHHTTCEEEEEECT--TSSEEEEEES-SEEEEEETTCC----
T ss_pred             CCCeEEEEECcCCccc---cceeeEeccCCCccccccccccCceEEEEEECC--CCCEEEEeeC-CeEEEEeCCCC----
Confidence            9999999999765210   001456666654            899999999  9999999998 99999999852    


Q ss_pred             ceeEEeeeecccceeecc-----ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          146 NWQLQAEFQNAIDSVTMF-----RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~-----~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                       .+++..+..|.......     ......+..++|+|++.     +|++|+.|     +.|+|||+.++.
T Consensus       317 -~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-----~l~s~s~d-----g~v~iwd~~~~~  375 (447)
T 3dw8_B          317 -NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-----VVMTGSYN-----NFFRMFDRNTKR  375 (447)
T ss_dssp             -SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-----EEEEECST-----TEEEEEETTTCC
T ss_pred             -ccccceeeccccccccccccccccccccceEEEECCCCC-----EEEEeccC-----CEEEEEEcCCCc
Confidence             23444555543211100     00000122489999987     89999999     999999987654

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.2e-27  Score=204.22  Aligned_cols=186  Identities=14%  Similarity=0.242  Sum_probs=145.8

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ..+|.+.|++++|+|++++||+|+.||.|+||+..     ..+....+ .|...|.+++|+|   +++|++++.|++|++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-----~~~~~~~~-~~~~~V~~l~fsp---g~~L~S~s~D~~v~l   83 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-----QVEVVIKL-EDRSAIKEMRFVK---GIYLVVINAKDTVYV   83 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECST-----TCEEEEEC-SSCCCEEEEEEET---TTEEEEEETTCEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCC-----CcEEEEEc-CCCCCEEEEEEcC---CCEEEEEECcCeEEE
Confidence            34788999999999999999999999999999987     44444444 4788999999998   569999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE-----------eee
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ-----------AEF  153 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-----------~~~  153 (240)
                      ||+..+       +++..+. +...|++++|+|  ++.+|++|+.||+|++||+++.      .+.           ..+
T Consensus        84 Wd~~~~-------~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~------~~~~~~i~~~~~~~~~~  147 (902)
T 2oaj_A           84 LSLYSQ-------KVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRD------QLSSFKLDNLQKSSFFP  147 (902)
T ss_dssp             EETTTC-------SEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTT------EEEEEEECCHHHHHTCS
T ss_pred             EECCCC-------cEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCC------ccccceecccccccccc
Confidence            999776       6666665 567899999999  9999999999999999999863      221           111


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC-----------
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP-----------  222 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~-----------  222 (240)
                      ..|...|          .+++|+|+..    .+|++|+.|     +.| +||+++....    ..+..+           
T Consensus       148 ~~h~~~V----------~sl~~sp~~~----~~l~~g~~d-----g~v-lWd~~~~~~~----~~~~~~~~~g~~~~~~~  203 (902)
T 2oaj_A          148 AARLSPI----------VSIQWNPRDI----GTVLISYEY-----VTL-TYSLVENEIK----QSFIYELPPFAPGGDFS  203 (902)
T ss_dssp             SSCCCCC----------CEEEEETTEE----EEEEEECSS-----CEE-EEETTTTEEE----EEECCCBCTTCCCSTTC
T ss_pred             ccCCCCe----------EEEEEccCCC----CEEEEEeCC-----CcE-EEECCCCceE----EEEecccCCcCCCcccc
Confidence            2333334          4999999742    178888888     999 9999775422    222222           


Q ss_pred             ----CCCCCceEEEEEecCCC
Q 026295          223 ----EDRSDEVYAVAWALNIG  239 (240)
Q Consensus       223 ----~~h~~~v~~v~~sp~~~  239 (240)
                          .+|...|++++|+||+.
T Consensus       204 ~~~~~~h~~~V~~v~fspdg~  224 (902)
T 2oaj_A          204 EKTNEKRTPKVIQSLYHPNSL  224 (902)
T ss_dssp             CCTTSCBCCCEEEEEECTTSS
T ss_pred             cccccccCCCeEEEEEcCCCC
Confidence                34567899999999974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.95  E-value=8.1e-27  Score=188.41  Aligned_cols=197  Identities=15%  Similarity=0.178  Sum_probs=144.6

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCc-EEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            6 ATLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSS-FTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         6 ~~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ..|.+.|++++|+| ++++|++|+.||+|+|||+....... .+....+ .|...|.+++|+|+  +.+|++++.|+.|+
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~--~~~l~s~s~dg~i~  136 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPN--FDAFAVSSKDGQII  136 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCC--CCEEEEEeCCCEEE
Confidence            67899999999999 99999999999999999986310001 1122222 58999999999998  99999999999999


Q ss_pred             EEEeeec-cCC---CcccEEEEEee--e--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           84 LWEEIVE-DAQ---PLQWKLCKSFE--S--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        84 iwd~~~~-~~~---~~~~~~~~~~~--~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      +||+... .+.   ......+..+.  .  +...+.++.+....++.+|++++.|+.|++||+++      .++...+..
T Consensus       137 vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~------~~~~~~~~~  210 (437)
T 3gre_A          137 VLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT------LERLQIIEN  210 (437)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT------CCEEEEEEC
T ss_pred             EEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC------CeeeEEEcc
Confidence            9999521 000   00001122221  1  34556677744334899999999999999999987      566667766


Q ss_pred             --ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          156 --AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       156 --~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                        |...+.          +++|+|++.     +|++|+.|     +.|++||+++..    ....+.  .+|..+|++++
T Consensus       211 ~~h~~~v~----------~~~~s~~~~-----~l~s~~~d-----g~i~iwd~~~~~----~~~~~~--~~~~~~v~~~~  264 (437)
T 3gre_A          211 SPRHGAVS----------SICIDEECC-----VLILGTTR-----GIIDIWDIRFNV----LIRSWS--FGDHAPITHVE  264 (437)
T ss_dssp             CGGGCCEE----------EEEECTTSC-----EEEEEETT-----SCEEEEETTTTE----EEEEEB--CTTCEEEEEEE
T ss_pred             CCCCCceE----------EEEECCCCC-----EEEEEcCC-----CeEEEEEcCCcc----EEEEEe--cCCCCceEEEE
Confidence              566666          999999987     89999999     999999998643    222222  13666999998


Q ss_pred             EecC
Q 026295          234 WALN  237 (240)
Q Consensus       234 ~sp~  237 (240)
                      |+|.
T Consensus       265 ~~~~  268 (437)
T 3gre_A          265 VCQF  268 (437)
T ss_dssp             ECTT
T ss_pred             eccc
Confidence            8875

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=7.7e-27  Score=185.99  Aligned_cols=193  Identities=16%  Similarity=0.149  Sum_probs=151.1

Q ss_pred             hhccc-----ccceEEEEEC----CCCCE-EEEEeCCCcEEEEeCCC------CCCCcEEEEeEe-------eecCccEE
Q 026295            4 AVATL-----DKGTTSSSWN----YCGQR-LATGSTDGTLSIFDSPD------PSSSSFTCNLKT-------KVHAGAIL   60 (240)
Q Consensus         4 ~~~~h-----~~~v~~~~~s----~~~~~-l~~~~~d~~i~iw~~~~------~~~~~~~~~~~~-------~~h~~~v~   60 (240)
                      .+..|     ...|.+++|+    |++++ |++++.|+.|++||+..      ...-.+.....+       ..|...|.
T Consensus       111 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  190 (397)
T 1sq9_A          111 KLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT  190 (397)
T ss_dssp             EECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCC
T ss_pred             eecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCce
Confidence            35556     5899999999    99999 99999999999999974      211011111144       34888999


Q ss_pred             EEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee---c---cccEEeEEEeecCCCcEEEEEeCC---C
Q 026295           61 KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES---T---STQVLDVQFGVSSTSLKLVAAYSD---G  131 (240)
Q Consensus        61 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~~~~~d---g  131 (240)
                      +++|+|+  + ++++++.|+.|++||++..       +++..+..   |   ...|.+++|+|  ++.+|++++.|   |
T Consensus       191 ~~~~~~~--~-~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~h~~~~~~i~~i~~~~--~~~~l~~~~~d~~~g  258 (397)
T 1sq9_A          191 SVDISER--G-LIATGFNNGTVQISELSTL-------RPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAIAHDSNSFG  258 (397)
T ss_dssp             EEEECTT--S-EEEEECTTSEEEEEETTTT-------EEEEEEECCC---CCCCCEEEEEECS--STTEEEEEEEETTEE
T ss_pred             EEEECCC--c-eEEEEeCCCcEEEEECCCC-------ceeEEEeccccccccCCccceEEECC--CCCEEEEEecCCCCc
Confidence            9999999  8 9999999999999999876       78888888   8   89999999999  99999999999   9


Q ss_pred             cEEEEEecCcccccceeEEeeeec-------------ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCC
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQN-------------AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQL  198 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~  198 (240)
                      .|++||+++      .+....+..             |...+.          +++|+|++.     +|++++.|     
T Consensus       259 ~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~----------~~~~~~~~~-----~l~~~~~d-----  312 (397)
T 1sq9_A          259 CITLYETEF------GERIGSLSVPTHSSQASLGEFAHSSWVM----------SLSFNDSGE-----TLCSAGWD-----  312 (397)
T ss_dssp             EEEEEETTT------CCEEEEECBC--------CCBSBSSCEE----------EEEECSSSS-----EEEEEETT-----
T ss_pred             eEEEEECCC------CcccceeccCcccccccccccccCCcEE----------EEEECCCCC-----EEEEEeCC-----
Confidence            999999987      455666665             555555          999999987     89999998     


Q ss_pred             CeEEEEEeecCCCCcceeEeee------cC------------CCCCCceEEEEEecCC
Q 026295          199 NSSKVWEFDEAHNRWLPVAELA------LP------------EDRSDEVYAVAWALNI  238 (240)
Q Consensus       199 ~~i~iw~~~~~~~~~~~~~~~~------~~------------~~h~~~v~~v~~sp~~  238 (240)
                      +.|+|||+.+..    ....+.      .+            ..|...|++++|+|++
T Consensus       313 g~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          313 GKLRFWDVKTKE----RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             SEEEEEETTTTE----EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             CeEEEEEcCCCc----eeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            999999997754    233333      22            1127899999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.4e-27  Score=187.44  Aligned_cols=195  Identities=15%  Similarity=0.203  Sum_probs=155.9

Q ss_pred             cccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec------CccEEEEEEcCCCCC-CEEEEEe
Q 026295            6 ATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH------AGAILKVVWVPPEFG-DAVACIC   77 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~-~~l~s~~   77 (240)
                      ..|...|.+++|+|+ +.+|++++.|+.|++||+.     +.+.+..+..|      ...|.+++|+|+  + .++++++
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~  234 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-----AKKEVIHLSYTSPNSGIKQQLSVVEWHPK--NSTRVATAT  234 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-----TTEEEEEECCCCCSSCCCCCEEEEEECSS--CTTEEEEEE
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-----CCCcceEEeccccccccCCceEEEEECCC--CCCEEEEEE
Confidence            568889999999999 7899999999999999998     45677777765      788999999998  6 6899999


Q ss_pred             cCC---eEEEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee
Q 026295           78 SDG---SLLLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF  153 (240)
Q Consensus        78 ~d~---~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~  153 (240)
                      .|+   .|++||++...      .++..+. .|...|.+++|+|. ++.+|++++.||.|++||+++      .+.+..+
T Consensus       235 ~d~~~~~i~~~d~~~~~------~~~~~~~~~~~~~v~~~~~s~~-~~~~l~s~~~dg~v~~wd~~~------~~~~~~~  301 (416)
T 2pm9_A          235 GSDNDPSILIWDLRNAN------TPLQTLNQGHQKGILSLDWCHQ-DEHLLLSSGRDNTVLLWNPES------AEQLSQF  301 (416)
T ss_dssp             CCSSSCCCCEEETTSTT------SCSBCCCSCCSSCEEEEEECSS-CSSCEEEEESSSEEEEECSSS------CCEEEEE
T ss_pred             CCCCCceEEEEeCCCCC------CCcEEeecCccCceeEEEeCCC-CCCeEEEEeCCCCEEEeeCCC------Cccceee
Confidence            998   99999997642      3455666 78899999999873 577899999999999999987      5677777


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE----------ee----
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA----------EL----  219 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~----------~~----  219 (240)
                      ..|...+.          +++|+|++..    +|++++.|     +.|+||++.+.........          .+    
T Consensus       302 ~~~~~~v~----------~~~~s~~~~~----~l~s~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (416)
T 2pm9_A          302 PARGNWCF----------KTKFAPEAPD----LFACASFD-----NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV  362 (416)
T ss_dssp             ECSSSCCC----------CEEECTTCTT----EEEECCSS-----SEEEEEESCCCCCSSCC------------------
T ss_pred             cCCCCceE----------EEEECCCCCC----EEEEEecC-----CcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence            77777666          9999999821    89999998     9999999987653322100          00    


Q ss_pred             --------------ecCCCCCCceEEEEEecCCC
Q 026295          220 --------------ALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       220 --------------~~~~~h~~~v~~v~~sp~~~  239 (240)
                                    .....|..++++++|+||+.
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  396 (416)
T 2pm9_A          363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK  396 (416)
T ss_dssp             ----CCSCCCSSCCCCCSTTCCCSCCCEEETTTE
T ss_pred             cccccccccccccccCCccccCCccceEEeeCCe
Confidence                          11112677889999999973

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=180.52  Aligned_cols=199  Identities=15%  Similarity=0.213  Sum_probs=148.1

Q ss_pred             hhcccccceEEEE------ECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc----cEEEEE----EcCCCC
Q 026295            4 AVATLDKGTTSSS------WNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG----AILKVV----WVPPEF   69 (240)
Q Consensus         4 ~~~~h~~~v~~~~------~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~----~v~~~~----~~~~~~   69 (240)
                      .+..|.+.|.+++      |+|++++|++++.|+.|++||+....    ..+..+..|.+    .+.++.    |+|+  
T Consensus       106 ~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--  179 (357)
T 3i2n_A          106 SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD----DPVANMEPVQGENKRDCWTVAFGNAYNQE--  179 (357)
T ss_dssp             EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS----SCSEEECCCTTSCCCCEEEEEEECCCC-C--
T ss_pred             EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC----CcceeccccCCCCCCceEEEEEEeccCCC--
Confidence            4667999999995      57899999999999999999998431    13445544444    788888    6777  


Q ss_pred             CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecC-CCcEEEEEeCCCcEEEEEecCccccccee
Q 026295           70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSS-TSLKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                      +.++++++.|+.|++||++..       +. .....+...|.+++|+|.. ++.+|++++.||.|++||+++........
T Consensus       180 ~~~l~~~~~d~~i~i~d~~~~-------~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~  251 (357)
T 3i2n_A          180 ERVVCAGYDNGDIKLFDLRNM-------AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA  251 (357)
T ss_dssp             CCEEEEEETTSEEEEEETTTT-------EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEE
T ss_pred             CCEEEEEccCCeEEEEECccC-------ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccccee
Confidence            999999999999999999875       44 3345677899999998732 46789999999999999998743222221


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc---------------
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW---------------  213 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~---------------  213 (240)
                      . ..+..|...+.          +++|+|++.    .+|++++.|     +.|++||++......               
T Consensus       252 ~-~~~~~~~~~v~----------~~~~~~~~~----~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~g~~~~~~~~~  311 (357)
T 3i2n_A          252 S-VSEKAHKSTVW----------QVRHLPQNR----ELFLTAGGA-----GGLHLWKYEYPIQRSKKDSEGIEMGVAGSV  311 (357)
T ss_dssp             E-EEEECCSSCEE----------EEEEETTEE----EEEEEEETT-----SEEEEEEEECCSCC--CCTTSCCCCCCCEE
T ss_pred             e-eccCCCcCCEE----------EEEECCCCC----cEEEEEeCC-----CcEEEeecCCCcccccccCCCCcccccccc
Confidence            1 13335655555          999999874    268999998     999999998754331               


Q ss_pred             ceeEeeecCCCCCCceEEEEEecCCC
Q 026295          214 LPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .....+   .+|...|++++|+|++.
T Consensus       312 ~~~~~~---~~~~~~v~~~~~s~~~~  334 (357)
T 3i2n_A          312 SLLQNV---TLSTQPISSLDWSPDKR  334 (357)
T ss_dssp             EEEEEE---ECCSSCEEEEEECSSST
T ss_pred             ceeecc---ccCCCCeeEEEEcCCCC
Confidence            223333   36788999999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=8.6e-26  Score=176.04  Aligned_cols=184  Identities=15%  Similarity=0.317  Sum_probs=143.0

Q ss_pred             hcccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCC----CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            5 VATLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSS----SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      +..|...|.+++|+|  ++++|++|+.|+.|++||+.....    ...+.+..+..|...|.+++|+|+..+.++++++.
T Consensus        53 ~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  132 (351)
T 3f3f_A           53 WRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGN  132 (351)
T ss_dssp             EECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             eccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecC
Confidence            567999999999999  699999999999999999974311    12367788889999999999998633688999999


Q ss_pred             CCeEEEEEeeeccCC-----------------------------------------------------CcccEEEEEeee
Q 026295           79 DGSLLLWEEIVEDAQ-----------------------------------------------------PLQWKLCKSFES  105 (240)
Q Consensus        79 d~~v~iwd~~~~~~~-----------------------------------------------------~~~~~~~~~~~~  105 (240)
                      |+.|++||++.....                                                     ......+..+..
T Consensus       133 dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (351)
T 3f3f_A          133 DGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG  212 (351)
T ss_dssp             TCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCC
T ss_pred             CCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCC
Confidence            999999998654210                                                     011123555667


Q ss_pred             ccccEEeEEEeecCCC----cEEEEEeCCCcEEEEEecCcccc-------------------------------------
Q 026295          106 TSTQVLDVQFGVSSTS----LKLVAAYSDGHVKVYELLDPLIL-------------------------------------  144 (240)
Q Consensus       106 ~~~~v~~~~~~~~~~~----~~l~~~~~dg~v~iw~~~~~~~~-------------------------------------  144 (240)
                      |...|.+++|+|  ++    .+|++++.||.|++||++.....                                     
T Consensus       213 h~~~i~~~~~~p--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (351)
T 3f3f_A          213 HKSLIRSISWAP--SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL  290 (351)
T ss_dssp             CCSCEEEEEECC--CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------
T ss_pred             CCcceeEEEECC--CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeee
Confidence            889999999999  77    88999999999999999853110                                     


Q ss_pred             ---cceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          145 ---KNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       145 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                         ...+.+..+..|...+.          +++|+|++.     +|++|+.|     +.|+||++.++.
T Consensus       291 ~~~~~~~~~~~~~~h~~~v~----------~~~~s~~~~-----~l~s~~~d-----g~v~iw~~~~~~  339 (351)
T 3f3f_A          291 QSNLQVELLSEHDDHNGEVW----------SVSWNLTGT-----ILSSAGDD-----GKVRLWKATYSN  339 (351)
T ss_dssp             CCSEEEEEEEEECTTSSCEE----------EEEECSSSC-----CEEEEETT-----SCEEEEEECTTS
T ss_pred             cccccccEEEEEecccccEE----------EEEEcCCCC-----EEEEecCC-----CcEEEEecCcCc
Confidence               01234444455555554          999999987     89999999     999999998754

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.2e-26  Score=178.16  Aligned_cols=193  Identities=12%  Similarity=0.167  Sum_probs=155.1

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC----
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD----   79 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----   79 (240)
                      .+..|.+.|.+++|+|++++|++++.|+.|++||+.     +.+.+..+. +...|.+++|+|+  +.++++++.+    
T Consensus        69 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-----~~~~~~~~~-~~~~v~~~~~~~~--~~~l~~~~~~~~~~  140 (369)
T 3zwl_B           69 TLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-----NGQCVATWK-SPVPVKRVEFSPC--GNYFLAILDNVMKN  140 (369)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-----TCCEEEEEE-CSSCEEEEEECTT--SSEEEEEECCBTTB
T ss_pred             hhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCcEEEEee-cCCCeEEEEEccC--CCEEEEecCCccCC
Confidence            466799999999999999999999999999999998     456666666 7889999999999  9999999998    


Q ss_pred             -CeEEEEEeeeccCCC----cccEEEEEeeeccc--cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           80 -GSLLLWEEIVEDAQP----LQWKLCKSFESTST--QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        80 -~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                       +.|++||+.......    ........+..+..  .+.+++|+|  ++.+|++++.||.|++||+++.     ......
T Consensus       141 ~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~  213 (369)
T 3zwl_B          141 PGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNN-----YEYVDS  213 (369)
T ss_dssp             CCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTT-----TEEEEE
T ss_pred             CCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCC-----cEeEEE
Confidence             999999998653210    00012233344444  899999999  9999999999999999999863     355666


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v  232 (240)
                      +..+...+.          +++|+|++.     +|++++.|     +.|++||+.+..    ....+.    +...+..+
T Consensus       214 ~~~~~~~v~----------~~~~~~~~~-----~l~~~~~d-----~~i~v~d~~~~~----~~~~~~----~~~~~~~~  265 (369)
T 3zwl_B          214 IDLHEKSIS----------DMQFSPDLT-----YFITSSRD-----TNSFLVDVSTLQ----VLKKYE----TDCPLNTA  265 (369)
T ss_dssp             EECCSSCEE----------EEEECTTSS-----EEEEEETT-----SEEEEEETTTCC----EEEEEE----CSSCEEEE
T ss_pred             EecCCCcee----------EEEECCCCC-----EEEEecCC-----ceEEEEECCCCc----eeeeec----CCCCceeE
Confidence            667766666          999999987     89999998     999999998754    223333    55589999


Q ss_pred             EEecCCC
Q 026295          233 AWALNIG  239 (240)
Q Consensus       233 ~~sp~~~  239 (240)
                      +|+|++.
T Consensus       266 ~~~~~~~  272 (369)
T 3zwl_B          266 VITPLKE  272 (369)
T ss_dssp             EECSSSS
T ss_pred             EecCCCc
Confidence            9999874

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.2e-26  Score=183.43  Aligned_cols=180  Identities=16%  Similarity=0.319  Sum_probs=149.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      |.+.|++++|+|++++|++|+.||.|++|+.      +.+.+..+..|...|.+++|+|+  +.+|++++.|+.|++||+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~iwd~  178 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWNK------TGALLNVLNFHRAPIVSVKWNKD--GTHIISMDVENVTILWNV  178 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEET------TSCEEEEECCCCSCEEEEEECTT--SSEEEEEETTCCEEEEET
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEeC------CCCeeeeccCCCccEEEEEECCC--CCEEEEEecCCeEEEEEC
Confidence            6789999999999999999999999999994      33567788899999999999999  999999999999999999


Q ss_pred             eeccCCCcccEEEEEeeecccc---------------EEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQ---------------VLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      ..+       +.+..+..+...               +.+++|+|  ++. +++++.||.|++||+++      .+....
T Consensus       179 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~g~i~~~d~~~------~~~~~~  242 (425)
T 1r5m_A          179 ISG-------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD--DDK-FVIPGPKGAIFVYQITE------KTPTGK  242 (425)
T ss_dssp             TTT-------EEEEEECCC---------------CCCBSCCEEEE--TTE-EEEECGGGCEEEEETTC------SSCSEE
T ss_pred             CCC-------cEEEEeeccccCccceeeccccCCcceeeEEEEcC--CCE-EEEEcCCCeEEEEEcCC------Cceeee
Confidence            766       777777766665               99999998  655 88999999999999987      344555


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV  232 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v  232 (240)
                      +..+...+.          +++|+|++.     +|++++.|     +.|++||+.+....    ..+.   +|...|+++
T Consensus       243 ~~~~~~~i~----------~~~~~~~~~-----~l~~~~~d-----~~i~i~d~~~~~~~----~~~~---~~~~~i~~~  295 (425)
T 1r5m_A          243 LIGHHGPIS----------VLEFNDTNK-----LLLSASDD-----GTLRIWHGGNGNSQ----NCFY---GHSQSIVSA  295 (425)
T ss_dssp             ECCCSSCEE----------EEEEETTTT-----EEEEEETT-----SCEEEECSSSBSCS----EEEC---CCSSCEEEE
T ss_pred             eccCCCceE----------EEEECCCCC-----EEEEEcCC-----CEEEEEECCCCccc----eEec---CCCccEEEE
Confidence            566666666          999999987     89999998     99999999875433    2223   477799999


Q ss_pred             EEecCC
Q 026295          233 AWALNI  238 (240)
Q Consensus       233 ~~sp~~  238 (240)
                      +|+|++
T Consensus       296 ~~~~~~  301 (425)
T 1r5m_A          296 SWVGDD  301 (425)
T ss_dssp             EEETTT
T ss_pred             EECCCC
Confidence            999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.4e-26  Score=181.65  Aligned_cols=171  Identities=13%  Similarity=0.117  Sum_probs=131.4

Q ss_pred             ccccceEEEEECC--CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            7 TLDKGTTSSSWNY--CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         7 ~h~~~v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .|.+.|.+++|+|  ++++|++|+.|++|++||+..     .+.+.... .|...|.+++|+|+  +.+|++|+.|+.|+
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~~i~~~~~~pd--g~~lasg~~dg~i~  195 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-----DSQYIVHSAKSDVEYSSGVLHKD--SLLLALYSPDGILD  195 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-----SCEEEEECCCSSCCCCEEEECTT--SCEEEEECTTSCEE
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-----CcEEEEEecCCCCceEEEEECCC--CCEEEEEcCCCEEE
Confidence            3557899999999  999999999999999999983     34444443 45568999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEE-EEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           84 LWEEIVEDAQPLQWKLC-KSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      +||++.+       +.+ ..+.. |...|.+++|+|  ++.+|++++ |+.|++||+++.......   ..+..+...+.
T Consensus       196 iwd~~~~-------~~~~~~~~~~h~~~v~~l~fs~--~g~~l~s~~-~~~v~iwd~~~~~~~~~~---~~~~~~~~~~~  262 (343)
T 3lrv_A          196 VYNLSSP-------DQASSRFPVDEEAKIKEVKFAD--NGYWMVVEC-DQTVVCFDLRKDVGTLAY---PTYTIPEFKTG  262 (343)
T ss_dssp             EEESSCT-------TSCCEECCCCTTSCEEEEEECT--TSSEEEEEE-SSBEEEEETTSSTTCBSS---CCCBC-----C
T ss_pred             EEECCCC-------CCCccEEeccCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEEcCCCCcceee---ccccccccccc
Confidence            9999876       444 66777 899999999999  999999999 559999999874222111   11111111111


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcce
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                              ..+++|+|++.     +|++++. |     +.|+||++......|..
T Consensus       263 --------~~~~~~~~~g~-----~l~~~s~~d-----~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          263 --------TVTYDIDDSGK-----NMIAYSNES-----NSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             --------CEEEEECTTSS-----EEEEEETTT-----TEEEEEEECTTTCSEEE
T ss_pred             --------ceEEEECCCCC-----EEEEecCCC-----CcEEEEEEcccccceEe
Confidence                    02699999987     8999888 6     99999999877766654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=8e-26  Score=176.36  Aligned_cols=188  Identities=21%  Similarity=0.260  Sum_probs=156.7

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+.+|...|.+++|+|++++|++|+.|+.|++|+..     ..........+...+..+.+++.  +.+|++++.|+.++
T Consensus        81 ~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~l~s~s~d~~~~  153 (340)
T 4aow_A           81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-----TGTTTRRFVGHTKDVLSVAFSSD--NRQIVSGSRDKTIK  153 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TTEEEEEEECCSSCEEEEEECTT--SSCEEEEETTSCEE
T ss_pred             EEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec-----ccceeeeecCCCCceeEEEEeec--CccceeecCCCeEE
Confidence            467799999999999999999999999999999998     44566666778888999999998  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||.....      ........|...+..++|++.....++++++.|+.|++||+++      .++...+..|...+.  
T Consensus       154 ~~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~------~~~~~~~~~h~~~v~--  219 (340)
T 4aow_A          154 LWNTLGVC------KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN------CKLKTNHIGHTGYLN--  219 (340)
T ss_dssp             EECTTSCE------EEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEE--
T ss_pred             EEEeCCCc------eEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCC------CceeeEecCCCCcEE--
Confidence            99986531      3444556788899999998855567889999999999999987      577777777877776  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                              +++|+|++.     +|++|+.|     +.|++||+.+..    ....+.    +...|.+++|+|++
T Consensus       220 --------~~~~s~~~~-----~l~s~s~D-----g~i~iwd~~~~~----~~~~~~----~~~~v~~~~~~~~~  268 (340)
T 4aow_A          220 --------TVTVSPDGS-----LCASGGKD-----GQAMLWDLNEGK----HLYTLD----GGDIINALCFSPNR  268 (340)
T ss_dssp             --------EEEECTTSS-----EEEEEETT-----CEEEEEETTTTE----EEEEEE----CSSCEEEEEECSSS
T ss_pred             --------EEEECCCCC-----EEEEEeCC-----CeEEEEEeccCc----eeeeec----CCceEEeeecCCCC
Confidence                    999999987     89999999     999999987653    233333    44589999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.8e-27  Score=187.71  Aligned_cols=193  Identities=13%  Similarity=0.242  Sum_probs=152.6

Q ss_pred             hhcccccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCC----cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295            4 AVATLDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSS----SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      .+..|.+.|.+++|+|+ +++|++++.|+.|++||+......    .......+..|...|.+++|+|+ .+.+|++++.
T Consensus       108 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~  186 (416)
T 2pm9_A          108 RFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGS  186 (416)
T ss_dssp             ECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESS
T ss_pred             hccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCC-CCcEEEEEcC
Confidence            36679999999999998 899999999999999999743200    00112234578999999999987 2478999999


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeec------cccEEeEEEeecCCC-cEEEEEeCCC---cEEEEEecCccccccee
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFEST------STQVLDVQFGVSSTS-LKLVAAYSDG---HVKVYELLDPLILKNWQ  148 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~-~~l~~~~~dg---~v~iw~~~~~~~~~~~~  148 (240)
                      |+.|++||++.+       +.+..+..+      ...|.+++|+|  ++ .++++++.|+   .|++||+++.     ..
T Consensus       187 dg~v~iwd~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~~~~i~~~d~~~~-----~~  252 (416)
T 2pm9_A          187 SNFASIWDLKAK-------KEVIHLSYTSPNSGIKQQLSVVEWHP--KNSTRVATATGSDNDPSILIWDLRNA-----NT  252 (416)
T ss_dssp             SSCEEEEETTTT-------EEEEEECCCCCSSCCCCCEEEEEECS--SCTTEEEEEECCSSSCCCCEEETTST-----TS
T ss_pred             CCCEEEEECCCC-------CcceEEeccccccccCCceEEEEECC--CCCCEEEEEECCCCCceEEEEeCCCC-----CC
Confidence            999999999876       777777765      78899999999  76 6899999998   9999999873     13


Q ss_pred             EEeeee-cccceeeccccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCC
Q 026295          149 LQAEFQ-NAIDSVTMFRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRS  226 (240)
Q Consensus       149 ~~~~~~-~~~~~v~~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~  226 (240)
                      ....+. .|...+.          +++|+| ++.     +|++++.|     +.|++||+.+..    ....+.   +|.
T Consensus       253 ~~~~~~~~~~~~v~----------~~~~s~~~~~-----~l~s~~~d-----g~v~~wd~~~~~----~~~~~~---~~~  305 (416)
T 2pm9_A          253 PLQTLNQGHQKGIL----------SLDWCHQDEH-----LLLSSGRD-----NTVLLWNPESAE----QLSQFP---ARG  305 (416)
T ss_dssp             CSBCCCSCCSSCEE----------EEEECSSCSS-----CEEEEESS-----SEEEEECSSSCC----EEEEEE---CSS
T ss_pred             CcEEeecCccCcee----------EEEeCCCCCC-----eEEEEeCC-----CCEEEeeCCCCc----cceeec---CCC
Confidence            334444 5555555          999999 665     89999998     999999988754    333344   577


Q ss_pred             CceEEEEEecCC
Q 026295          227 DEVYAVAWALNI  238 (240)
Q Consensus       227 ~~v~~v~~sp~~  238 (240)
                      ..|++++|+|++
T Consensus       306 ~~v~~~~~s~~~  317 (416)
T 2pm9_A          306 NWCFKTKFAPEA  317 (416)
T ss_dssp             SCCCCEEECTTC
T ss_pred             CceEEEEECCCC
Confidence            799999999987

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=4.7e-26  Score=180.18  Aligned_cols=166  Identities=10%  Similarity=0.064  Sum_probs=133.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC----eE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG----SL   82 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~----~v   82 (240)
                      .|.+.|.+++|+|+|++|++++.++ +++|+....   ..........|...|.+++|+|+  +.++++++.|+    .+
T Consensus       174 ~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~---~~~~~~~~~~~~~~v~~v~fspd--g~~l~~~s~d~~~~~~i  247 (365)
T 4h5i_A          174 ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTG---SCIARKTDFDKNWSLSKINFIAD--DTVLIAASLKKGKGIVL  247 (365)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTC---CEEEEECCCCTTEEEEEEEEEET--TEEEEEEEESSSCCEEE
T ss_pred             CCCCceEEEEEccCCceEEecccee-EEEEEeccC---cceeeeecCCCCCCEEEEEEcCC--CCEEEEEecCCcceeEE
Confidence            4778899999999999999998765 555555422   22233345578899999999999  99999998887    68


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~  161 (240)
                      ++|++.....   .......+..|...|++++|+|  +|.+|++|+.|++|+|||+++      ++++..+ ..|...|.
T Consensus       248 ~~~~~~~~~~---~~~~~~~~~~~~~~V~~~~~Sp--dg~~lasgs~D~~V~iwd~~~------~~~~~~~~~gH~~~V~  316 (365)
T 4h5i_A          248 TKISIKSGNT---SVLRSKQVTNRFKGITSMDVDM--KGELAVLASNDNSIALVKLKD------LSMSKIFKQAHSFAIT  316 (365)
T ss_dssp             EEEEEETTEE---EEEEEEEEESSCSCEEEEEECT--TSCEEEEEETTSCEEEEETTT------TEEEEEETTSSSSCEE
T ss_pred             eeccccccee---cceeeeeecCCCCCeEeEEECC--CCCceEEEcCCCEEEEEECCC------CcEEEEecCcccCCEE
Confidence            8888865411   0123455677889999999999  999999999999999999987      5766664 57877777


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                                +|+|+|++.     +||+|+.|     ++|+||++...
T Consensus       317 ----------~v~fSpdg~-----~laS~S~D-----~tvrvw~ip~~  344 (365)
T 4h5i_A          317 ----------EVTISPDST-----YVASVSAA-----NTIHIIKLPLN  344 (365)
T ss_dssp             ----------EEEECTTSC-----EEEEEETT-----SEEEEEECCTT
T ss_pred             ----------EEEECCCCC-----EEEEEeCC-----CeEEEEEcCCC
Confidence                      999999998     99999999     99999999654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.95  E-value=2.6e-26  Score=180.20  Aligned_cols=189  Identities=16%  Similarity=0.201  Sum_probs=146.5

Q ss_pred             ccccceEEEEECCC---CCEEEEEeCCCcEEEEeCCCCCCCcEE-EEeEeeecCccEEEEEE------cCCCCCCEEEEE
Q 026295            7 TLDKGTTSSSWNYC---GQRLATGSTDGTLSIFDSPDPSSSSFT-CNLKTKVHAGAILKVVW------VPPEFGDAVACI   76 (240)
Q Consensus         7 ~h~~~v~~~~~s~~---~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~------~~~~~~~~l~s~   76 (240)
                      .|...|.+++|+|+   +++|++|+.|+.|++||+..     .+ .+..+.+|...|.++.|      +|+  +.+|+++
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~s~~--~~~l~~~  135 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA-----PEMPVYSVKGHKEIINAIDGIGGLGIGEG--APEIVTG  135 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS-----CSSCSEEECCCSSCEEEEEEESGGGCC-C--CCEEEEE
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC-----CCccEEEEEecccceEEEeeccccccCCC--ccEEEEE
Confidence            68889999999998   69999999999999999984     33 56778899999999965      566  8999999


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeeecc----ccEEeEE----EeecCCCcEEEEEeCCCcEEEEEecCccccccee
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTS----TQVLDVQ----FGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~v~~~~----~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                      +.|+.|++||+....      .++..+..+.    ..+.+++    |+|  ++.++++++.||.|++||+++.      +
T Consensus       136 ~~d~~i~vwd~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~------~  201 (357)
T 3i2n_A          136 SRDGTVKVWDPRQKD------DPVANMEPVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNM------A  201 (357)
T ss_dssp             ETTSCEEEECTTSCS------SCSEEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTT------E
T ss_pred             eCCCeEEEEeCCCCC------CcceeccccCCCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccC------c
Confidence            999999999997652      1445554433    3788888    667  8999999999999999999873      3


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeC---CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNP---QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR  225 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p---~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h  225 (240)
                      .. ....+...+.          +++|+|   ++.     +|++++.|     +.|++||+++.........  ....+|
T Consensus       202 ~~-~~~~~~~~v~----------~~~~~~~~~~~~-----~l~~~~~d-----g~i~i~d~~~~~~~~~~~~--~~~~~~  258 (357)
T 3i2n_A          202 LR-WETNIKNGVC----------SLEFDRKDISMN-----KLVATSLE-----GKFHVFDMRTQHPTKGFAS--VSEKAH  258 (357)
T ss_dssp             EE-EEEECSSCEE----------EEEESCSSSSCC-----EEEEEEST-----TEEEEEEEEEEETTTEEEE--EEEECC
T ss_pred             ee-eecCCCCceE----------EEEcCCCCCCCC-----EEEEECCC-----CeEEEEeCcCCCcccceee--eccCCC
Confidence            32 2234444555          999999   665     89999998     9999999988654433211  112257


Q ss_pred             CCceEEEEEecCCC
Q 026295          226 SDEVYAVAWALNIG  239 (240)
Q Consensus       226 ~~~v~~v~~sp~~~  239 (240)
                      ...|++++|+|++.
T Consensus       259 ~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          259 KSTVWQVRHLPQNR  272 (357)
T ss_dssp             SSCEEEEEEETTEE
T ss_pred             cCCEEEEEECCCCC
Confidence            78999999999863

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=2e-25  Score=181.61  Aligned_cols=191  Identities=15%  Similarity=0.177  Sum_probs=154.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.+.|.+++|++++ +|++|+.||+|++||+.     +.+.+..+.+|...|.+++|++...+.++++++.|+.|+
T Consensus       157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~-----~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~  230 (464)
T 3v7d_B          157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK-----KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH  230 (464)
T ss_dssp             EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred             EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC-----CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence            466799999999999988 99999999999999998     567888899999999999998532278999999999999


Q ss_pred             EEEeeeccCCCc----------------ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccce
Q 026295           84 LWEEIVEDAQPL----------------QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNW  147 (240)
Q Consensus        84 iwd~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~  147 (240)
                      +||+........                ....+..+.+|...+.++  ++  ++.++++++.||.|++||+++      .
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~--~~~~l~~~~~d~~i~vwd~~~------~  300 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SG--HGNIVVSGSYDNTLIVWDVAQ------M  300 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EE--ETTEEEEEETTSCEEEEETTT------T
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cC--CCCEEEEEeCCCeEEEEECCC------C
Confidence            999976522100                000255666777888776  56  788999999999999999987      5


Q ss_pred             eEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC
Q 026295          148 QLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD  227 (240)
Q Consensus       148 ~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~  227 (240)
                      ++...+..|...+.          +++|+|++.     +|++|+.|     +.|++||+.++.    ....+.   +|..
T Consensus       301 ~~~~~~~~~~~~v~----------~~~~~~~~~-----~l~sg~~d-----g~i~vwd~~~~~----~~~~~~---~h~~  353 (464)
T 3v7d_B          301 KCLYILSGHTDRIY----------STIYDHERK-----RCISASMD-----TTIRIWDLENGE----LMYTLQ---GHTA  353 (464)
T ss_dssp             EEEEEECCCSSCEE----------EEEEETTTT-----EEEEEETT-----SCEEEEETTTTE----EEEEEC---CCSS
T ss_pred             cEEEEecCCCCCEE----------EEEEcCCCC-----EEEEEeCC-----CcEEEEECCCCc----EEEEEe---CCCC
Confidence            77777777777776          999999987     89999999     999999998754    333333   5778


Q ss_pred             ceEEEEEecC
Q 026295          228 EVYAVAWALN  237 (240)
Q Consensus       228 ~v~~v~~sp~  237 (240)
                      .|++++|+++
T Consensus       354 ~v~~~~~~~~  363 (464)
T 3v7d_B          354 LVGLLRLSDK  363 (464)
T ss_dssp             CEEEEEECSS
T ss_pred             cEEEEEEcCC
Confidence            9999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2e-25  Score=172.05  Aligned_cols=184  Identities=14%  Similarity=0.086  Sum_probs=151.2

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+.+|.+.|++++| +++++|++|+.||.|++||+.     +.+....+..|...|.+++|+|+  +.++++++.|+.|
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~-----~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i   83 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKD-----DQWLGTVVYTGQGFLNSVCYDSE--KELLLFGGKDTMI   83 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEES-----SSEEEEEEEECSSCEEEEEEETT--TTEEEEEETTSCE
T ss_pred             HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECC-----CCEEEEEeecCCccEEEEEECCC--CCEEEEecCCCeE
Confidence            457889999999999 999999999999999999997     55777888899999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ++|++.....    .+.+..+..|...|.+++|    ++.++++++.||.|++||  .      ......+..+...+. 
T Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~------~~~~~~~~~~~~~v~-  146 (313)
T 3odt_A           84 NGVPLFATSG----EDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--E------GSLVYNLQAHNASVW-  146 (313)
T ss_dssp             EEEETTCCTT----SCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--T------TEEEEEEECCSSCEE-
T ss_pred             EEEEeeecCC----CCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--C------CcEEEecccCCCcee-
Confidence            9999876422    2556677889999999999    356899999999999999  2      355666677776666 


Q ss_pred             cccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          163 FRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                               ++.|.| ++.     +|++++.|     +.|++||...      ....+..  .|...|++++|+|++
T Consensus       147 ---------~~~~~~~~~~-----~l~~~~~d-----~~i~i~d~~~------~~~~~~~--~~~~~i~~~~~~~~~  196 (313)
T 3odt_A          147 ---------DAKVVSFSEN-----KFLTASAD-----KTIKLWQNDK------VIKTFSG--IHNDVVRHLAVVDDG  196 (313)
T ss_dssp             ---------EEEEEETTTT-----EEEEEETT-----SCEEEEETTE------EEEEECS--SCSSCEEEEEEEETT
T ss_pred             ---------EEEEccCCCC-----EEEEEECC-----CCEEEEecCc------eEEEEec--cCcccEEEEEEcCCC
Confidence                     899988 555     89999999     9999999321      2222221  277799999999986

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.95  E-value=5.1e-26  Score=196.67  Aligned_cols=190  Identities=17%  Similarity=0.254  Sum_probs=156.5

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+..|.+.|++++|+|++++|++|+.||.|+||++.     +++.+..+.+|.+.|.+++|+|+  +.+|++++.|+.|
T Consensus        49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~-----~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i  121 (814)
T 3mkq_A           49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-----TGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTV  121 (814)
T ss_dssp             EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEE
T ss_pred             EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC-----CCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEE
Confidence            3466799999999999999999999999999999998     55778888899999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc-ceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI-DSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~-~~v~  161 (240)
                      ++||+..+      +.....+..|...|.+++|+|. ++..+++++.||+|++||+...      .....+..+. ..+.
T Consensus       122 ~vw~~~~~------~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~~v~  188 (814)
T 3mkq_A          122 KLWNWENN------WALEQTFEGHEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVN  188 (814)
T ss_dssp             EEEEGGGT------SEEEEEEECCSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCCC
T ss_pred             EEEECCCC------ceEEEEEcCCCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC------cceeEEecCCCCCEE
Confidence            99999754      2667788889999999999872 4668999999999999999763      3333333332 3444


Q ss_pred             ccccccceeeeEEEeC--CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNP--QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p--~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                .++|+|  ++.     +|++++.|     +.|++||+.++.    ....+.   +|...|++++|+|++.
T Consensus       189 ----------~~~~~~~~~~~-----~l~~~~~d-----g~i~~~d~~~~~----~~~~~~---~~~~~v~~~~~~~~~~  241 (814)
T 3mkq_A          189 ----------YVDYYPLPDKP-----YMITASDD-----LTIKIWDYQTKS----CVATLE---GHMSNVSFAVFHPTLP  241 (814)
T ss_dssp             ----------EEEECCSTTCC-----EEEEECTT-----SEEEEEETTTTE----EEEEEE---CCSSCEEEEEECSSSS
T ss_pred             ----------EEEEEECCCCC-----EEEEEeCC-----CEEEEEECCCCc----EEEEEc---CCCCCEEEEEEcCCCC
Confidence                      899999  655     89999998     999999987654    233333   5777999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.95  E-value=8.4e-26  Score=203.33  Aligned_cols=205  Identities=14%  Similarity=0.138  Sum_probs=159.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.+.|.+++|+|++++|++|+.|+.|+|||+.     +++++..+.+|...|.+++|+|+..+.++++++.|+.|+
T Consensus       652 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~  726 (1249)
T 3sfz_A          652 DIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA-----TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLK  726 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEE
T ss_pred             EeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC-----CCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEE
Confidence            466799999999999999999999999999999998     567888999999999999999963367899999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc-------
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA-------  156 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-------  156 (240)
                      +||+..+       .++..+.+|...|.+++|+|  ++.++++++.||+|++||+++................       
T Consensus       727 vwd~~~~-------~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1249)
T 3sfz_A          727 LWDLNQK-------ECRNTMFGHTNSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDV  797 (1249)
T ss_dssp             EEETTSS-------SEEEEECCCSSCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CC
T ss_pred             EEECCCc-------chhheecCCCCCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccc
Confidence            9999876       78888999999999999999  9999999999999999999764221110000000000       


Q ss_pred             -----cceeecc---------------------------ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          157 -----IDSVTMF---------------------------RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       157 -----~~~v~~~---------------------------~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                           .....+.                           ..+...+.+++|+|++.     ++++++.+     +.|++|
T Consensus       798 ~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~-----~l~~~~~d-----g~v~vw  867 (1249)
T 3sfz_A          798 EVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDH-----LAVIALSQ-----YCVELW  867 (1249)
T ss_dssp             CCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTT-----EEEEECSS-----SCEEEE
T ss_pred             cceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCC-----EEEEEeCC-----CeEEEE
Confidence                 0000000                           01223455889999887     89999998     999999


Q ss_pred             EeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ++.+..    ....+.   +|...|++++|+|++.
T Consensus       868 d~~~~~----~~~~~~---~h~~~v~~v~~spdg~  895 (1249)
T 3sfz_A          868 NIDSRL----KVADCR---GHLSWVHGVMFSPDGS  895 (1249)
T ss_dssp             ETTTTE----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             EcCCCc----eeeecC---CCccceEEEEECCCCC
Confidence            988653    223333   6888999999999874

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.95  E-value=1.9e-25  Score=181.67  Aligned_cols=190  Identities=15%  Similarity=0.223  Sum_probs=148.2

Q ss_pred             hhcccccce-EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGT-TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v-~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .+.+|.+.| .++.|  ++++|++|+.||+|++||+.     +.+.+..+.+|.+.|.+++|+|+  + ++++++.|+.|
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~-----~~~~~~~~~~h~~~V~~l~~~~~--~-~l~s~s~dg~i  185 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-----NKKFLLQLSGHDGGVWALKYAHG--G-ILVSGSTDRTV  185 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEECST--T-EEEEEETTSCE
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECC-----CCcEEEEEeCCCcCEEEEEEcCC--C-EEEEEeCCCCE
Confidence            467788775 56665  57899999999999999998     66788899999999999999887  5 89999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee--------------
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ--------------  148 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~--------------  148 (240)
                      ++||+..+       +++..+..|...|.+++|++..++.++++++.||+|++||+++........              
T Consensus       186 ~vwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  258 (464)
T 3v7d_B          186 RVWDIKKG-------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE  258 (464)
T ss_dssp             EEEETTTT-------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred             EEEECCCC-------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence            99999876       888899999999999999975588899999999999999998643221100              


Q ss_pred             ---EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC
Q 026295          149 ---LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR  225 (240)
Q Consensus       149 ---~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h  225 (240)
                         ....+..|...+          .+  +++++.     +|++|+.|     +.|++||+.+..    ....+.   +|
T Consensus       259 ~~~~~~~~~~~~~~v----------~~--~~~~~~-----~l~~~~~d-----~~i~vwd~~~~~----~~~~~~---~~  309 (464)
T 3v7d_B          259 NPYFVGVLRGHMASV----------RT--VSGHGN-----IVVSGSYD-----NTLIVWDVAQMK----CLYILS---GH  309 (464)
T ss_dssp             CTTEEEEECCCSSCE----------EE--EEEETT-----EEEEEETT-----SCEEEEETTTTE----EEEEEC---CC
T ss_pred             CeEEEEEccCccceE----------EE--EcCCCC-----EEEEEeCC-----CeEEEEECCCCc----EEEEec---CC
Confidence               112222232222          24  356655     89999999     999999997643    233333   57


Q ss_pred             CCceEEEEEecCCC
Q 026295          226 SDEVYAVAWALNIG  239 (240)
Q Consensus       226 ~~~v~~v~~sp~~~  239 (240)
                      ...|++++|+|++.
T Consensus       310 ~~~v~~~~~~~~~~  323 (464)
T 3v7d_B          310 TDRIYSTIYDHERK  323 (464)
T ss_dssp             SSCEEEEEEETTTT
T ss_pred             CCCEEEEEEcCCCC
Confidence            77999999999864

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.95  E-value=2e-25  Score=178.01  Aligned_cols=174  Identities=11%  Similarity=0.098  Sum_probs=134.7

Q ss_pred             ccccceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC-CCCEEEEEecCCeEEE
Q 026295            7 TLDKGTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE-FGDAVACICSDGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~d~~v~i   84 (240)
                      .|...|.+++|+| ++++|++++.|+.|++||+.     +.+....+. +...+.++.|++.. .+.++++++.|+.|++
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  170 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN-----TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQL  170 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETT-----TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCC-----CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence            5899999999999 77899999999999999998     446666665 67889999998861 1459999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeeeecccce----
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS----  159 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----  159 (240)
                      ||+..+       ..+..+..|...|.+++|+|  ++. +|++++.||.|++||++...     .....+..+...    
T Consensus       171 ~d~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~  236 (408)
T 4a11_B          171 CDLKSG-------SCSHILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRAS-----GCLITLDQHNGKKSQA  236 (408)
T ss_dssp             EESSSS-------CCCEEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSS-----CCSEECCTTTTCSCCC
T ss_pred             EeCCCc-------ceeeeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCC-----ccccccccccccccee
Confidence            999876       66778888999999999999  887 58999999999999998642     112222111000    


Q ss_pred             -eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          160 -VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       160 -v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                       ......+...+.+++|+|++.     +|++++.|     +.|++||+.+..
T Consensus       237 ~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~d-----g~i~vwd~~~~~  278 (408)
T 4a11_B          237 VESANTAHNGKVNGLCFTSDGL-----HLLTVGTD-----NRMRLWNSSNGE  278 (408)
T ss_dssp             TTTSSCSCSSCEEEEEECTTSS-----EEEEEETT-----SCEEEEETTTCC
T ss_pred             eccccccccCceeEEEEcCCCC-----EEEEecCC-----CeEEEEECCCCc
Confidence             000011223445999999987     89999998     999999987654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.95  E-value=1.2e-25  Score=179.10  Aligned_cols=176  Identities=16%  Similarity=0.149  Sum_probs=141.5

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee---c---CccEEEEEEcCCCCCCEEEEEecC
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV---H---AGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      ..|...|.+++|+|++ +|++++.|+.|++||+.     +.+.+..+..   |   ...|.+++|+|+  +.+|++++.|
T Consensus       183 ~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~-----~~~~~~~~~~~~~h~~~~~~i~~i~~~~~--~~~l~~~~~d  254 (397)
T 1sq9_A          183 MTPSQFATSVDISERG-LIATGFNNGTVQISELS-----TLRPLYNFESQHSMINNSNSIRSVKFSPQ--GSLLAIAHDS  254 (397)
T ss_dssp             SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-----TTEEEEEEECCC---CCCCCEEEEEECSS--TTEEEEEEEE
T ss_pred             cCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC-----CCceeEEEeccccccccCCccceEEECCC--CCEEEEEecC
Confidence            3478899999999999 99999999999999998     5577888888   8   999999999999  9999999999


Q ss_pred             ---CeEEEEEeeeccCCCcccEEEEEeee-------------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccc
Q 026295           80 ---GSLLLWEEIVEDAQPLQWKLCKSFES-------------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLI  143 (240)
Q Consensus        80 ---~~v~iwd~~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~  143 (240)
                         +.|++||+...       +++..+..             |...|.+++|+|  ++.+|++++.||.|++||+++   
T Consensus       255 ~~~g~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~---  322 (397)
T 1sq9_A          255 NSFGCITLYETEFG-------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLCSAGWDGKLRFWDVKT---  322 (397)
T ss_dssp             TTEEEEEEEETTTC-------CEEEEECBC--------CCBSBSSCEEEEEECS--SSSEEEEEETTSEEEEEETTT---
T ss_pred             CCCceEEEEECCCC-------cccceeccCcccccccccccccCCcEEEEEECC--CCCEEEEEeCCCeEEEEEcCC---
Confidence               99999999766       77888887             899999999999  999999999999999999987   


Q ss_pred             ccceeEEeeee------cccceee-----ccccccceeeeEEEeCCCC-----CCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          144 LKNWQLQAEFQ------NAIDSVT-----MFRKASCISASISWNPQKG-----ENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       144 ~~~~~~~~~~~------~~~~~v~-----~~~~~~~~~~~v~~~p~~~-----~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                         .+.+..+.      .+.....     ....+...+.+++|+|++.     ...+.+|++++.|     +.|++|++.
T Consensus       323 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~  394 (397)
T 1sq9_A          323 ---KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD-----RSIRWFREA  394 (397)
T ss_dssp             ---TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT-----TEEEEEEEE
T ss_pred             ---CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC-----CcEEEEEcC
Confidence               56666666      4400000     0000123344999999971     0011289999999     999999998


Q ss_pred             cC
Q 026295          208 EA  209 (240)
Q Consensus       208 ~~  209 (240)
                      ++
T Consensus       395 ~g  396 (397)
T 1sq9_A          395 GG  396 (397)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.95  E-value=1.6e-25  Score=179.19  Aligned_cols=187  Identities=16%  Similarity=0.202  Sum_probs=150.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|...|.+++|  ++++|++|+.|+.|++||+...    ...+..+.+|.+.|.+++|+|+  +.+|++++.|+.|+
T Consensus       171 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~v~  242 (401)
T 4aez_A          171 TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIA----NHQIGTLQGHSSEVCGLAWRSD--GLQLASGGNDNVVQ  242 (401)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS----SCEEEEEECCSSCEEEEEECTT--SSEEEEEETTSCEE
T ss_pred             EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccC----cceeeEEcCCCCCeeEEEEcCC--CCEEEEEeCCCeEE
Confidence            45679999999999  5679999999999999999742    2456778889999999999998  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEe--CCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +||++..       .++..+..|...|.+++|+|  ++. ++++++  .|+.|++||+++      .+....+. +...+
T Consensus       243 iwd~~~~-------~~~~~~~~~~~~v~~~~~~p--~~~~ll~~~~gs~d~~i~i~d~~~------~~~~~~~~-~~~~v  306 (401)
T 4aez_A          243 IWDARSS-------IPKFTKTNHNAAVKAVAWCP--WQSNLLATGGGTMDKQIHFWNAAT------GARVNTVD-AGSQV  306 (401)
T ss_dssp             EEETTCS-------SEEEEECCCSSCCCEEEECT--TSTTEEEEECCTTTCEEEEEETTT------CCEEEEEE-CSSCE
T ss_pred             EccCCCC-------CccEEecCCcceEEEEEECC--CCCCEEEEecCCCCCEEEEEECCC------CCEEEEEe-CCCcE
Confidence            9999876       77888888999999999998  664 455554  799999999987      45555553 33334


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEE--ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLG--FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~--~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .          +++|+|++.     +|+++  +.|     +.|++|++.+....  ....+.   +|...|++++|+||+
T Consensus       307 ~----------~~~~s~~~~-----~l~~~~g~~d-----g~i~v~~~~~~~~~--~~~~~~---~h~~~v~~~~~s~dg  361 (401)
T 4aez_A          307 T----------SLIWSPHSK-----EIMSTHGFPD-----NNLSIWSYSSSGLT--KQVDIP---AHDTRVLYSALSPDG  361 (401)
T ss_dssp             E----------EEEECSSSS-----EEEEEECTTT-----CEEEEEEEETTEEE--EEEEEE---CCSSCCCEEEECTTS
T ss_pred             E----------EEEECCCCC-----eEEEEeecCC-----CcEEEEecCCccce--eEEEec---CCCCCEEEEEECCCC
Confidence            4          899999987     77774  366     99999999875422  222333   577799999999987


Q ss_pred             C
Q 026295          239 G  239 (240)
Q Consensus       239 ~  239 (240)
                      .
T Consensus       362 ~  362 (401)
T 4aez_A          362 R  362 (401)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.5e-25  Score=181.90  Aligned_cols=195  Identities=12%  Similarity=0.039  Sum_probs=147.2

Q ss_pred             ccccceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            7 TLDKGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .|.+.|.+++|+|++++| ++|+.|+.|+||++...   .++.+..+.  .|...|.+++|+|+  +.+|++++.|+.|+
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~~~g~v~  174 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKT---SKNVLKLRKRFCFSKRPNAISIAED--DTTVIIADKFGDVY  174 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSS---SSSCEEEEEEEECSSCEEEEEECTT--SSEEEEEETTSEEE
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCC---CCceeeeeecccCCCCceEEEEcCC--CCEEEEEeCCCcEE
Confidence            566789999999999996 89999999999999721   112333443  56789999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccE-EEEEeeeccccEEeEEEeecCC---CcEEEEEeCCCcEEEEEecCcccccceeEEee-eecccc
Q 026295           84 LWEEIVEDAQPLQWK-LCKSFESTSTQVLDVQFGVSST---SLKLVAAYSDGHVKVYELLDPLILKNWQLQAE-FQNAID  158 (240)
Q Consensus        84 iwd~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~---~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~  158 (240)
                      +|++......    . +...+.+|...|.+++|+|  +   +.+|++++.|++|++||+++      ...+.. +..|..
T Consensus       175 ~~~~~~~~~~----~~~~~~~~~h~~~v~~~~~sp--~~~~~~~l~s~~~d~~i~vwd~~~------~~~~~~~~~~h~~  242 (450)
T 2vdu_B          175 SIDINSIPEE----KFTQEPILGHVSMLTDVHLIK--DSDGHQFIITSDRDEHIKISHYPQ------CFIVDKWLFGHKH  242 (450)
T ss_dssp             EEETTSCCCS----SCCCCCSEECSSCEEEEEEEE--CTTSCEEEEEEETTSCEEEEEESC------TTCEEEECCCCSS
T ss_pred             EEecCCcccc----cccceeeecccCceEEEEEcC--CCCCCcEEEEEcCCCcEEEEECCC------CceeeeeecCCCC
Confidence            9998765210    1 3336678889999999999  8   88999999999999999986      344444 345666


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEe-----e-------------e
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAE-----L-------------A  220 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~-----~-------------~  220 (240)
                      .+.          +++|+ ++.     +|++++.|     +.|++||+.++.........     +             .
T Consensus       243 ~v~----------~~~~s-d~~-----~l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (450)
T 2vdu_B          243 FVS----------SICCG-KDY-----LLLSAGGD-----DKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNE  301 (450)
T ss_dssp             CEE----------EEEEC-STT-----EEEEEESS-----SEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC-------
T ss_pred             ceE----------EEEEC-CCC-----EEEEEeCC-----CeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccc
Confidence            666          99999 776     89999998     99999999876532221100     0             0


Q ss_pred             cCCCCCCceEEEEEecCCC
Q 026295          221 LPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       221 ~~~~h~~~v~~v~~sp~~~  239 (240)
                      ....+...|.+++|+|++.
T Consensus       302 ~~~~~~~~v~~i~~~~~~~  320 (450)
T 2vdu_B          302 NNDIIEFAVSKIIKSKNLP  320 (450)
T ss_dssp             ---CBCCCEEEEEECSSSS
T ss_pred             ccccceEEEEEEEEeCCCC
Confidence            0002345799999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.94  E-value=2.2e-25  Score=174.10  Aligned_cols=210  Identities=12%  Similarity=0.038  Sum_probs=151.4

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~   83 (240)
                      ...|.+.|.+++|+|++++|++++.|+.|+||++....  .......+..|...|.+++|+|+  +. +|++++.|+.|+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--KNVDLLQSLRYKHPLLCCNFIDN--TDLQIYVGTVQGEIL   82 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--TEEEEEEEEECSSCEEEEEEEES--SSEEEEEEETTSCEE
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--ccccceeeeecCCceEEEEECCC--CCcEEEEEcCCCeEE
Confidence            45799999999999999999999999999999997442  22334556689999999999999  99 999999999999


Q ss_pred             EEEe-eeccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC---------ccccccee---
Q 026295           84 LWEE-IVEDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD---------PLILKNWQ---  148 (240)
Q Consensus        84 iwd~-~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~---------~~~~~~~~---  148 (240)
                      +||+ ..+        ....+..  |...|.+++|+|   +.+|++++.|+.|++||+++         ........   
T Consensus        83 ~wd~~~~~--------~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  151 (342)
T 1yfq_A           83 KVDLIGSP--------SFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN  151 (342)
T ss_dssp             EECSSSSS--------SEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred             EEEeccCC--------ceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCC
Confidence            9999 764        2366777  889999999987   66799999999999999875         32111110   


Q ss_pred             EEee-------------------eeccc---c-eeeccccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          149 LQAE-------------------FQNAI---D-SVTMFRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       149 ~~~~-------------------~~~~~---~-~v~~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                      .+..                   +....   . .......+...+.+++|+| ++.     +|++++.|     +.|++|
T Consensus       152 ~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~-----~l~~~~~d-----g~i~i~  221 (342)
T 1yfq_A          152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQE-----GYACSSID-----GRVAVE  221 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGC-----EEEEEETT-----SEEEEE
T ss_pred             ceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCC-----EEEEEecC-----CcEEEE
Confidence            0000                   00000   0 0000011222566899999 876     89999998     999999


Q ss_pred             EeecC--CCCcceeEeeecCC------CCCCceEEEEEecCCC
Q 026295          205 EFDEA--HNRWLPVAELALPE------DRSDEVYAVAWALNIG  239 (240)
Q Consensus       205 ~~~~~--~~~~~~~~~~~~~~------~h~~~v~~v~~sp~~~  239 (240)
                      +++..  .........+..+.      +|...|++++|+|++.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~  264 (342)
T 1yfq_A          222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK  264 (342)
T ss_dssp             ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred             EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence            99876  11112233334332      2455999999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=1.1e-24  Score=168.45  Aligned_cols=198  Identities=16%  Similarity=0.219  Sum_probs=147.7

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..|...|++++|+|++++|++|+.|++|+||++.     +.+++..+.+|...+.++.+  .  +.++++++.++.+++|
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-----~~~~~~~~~~h~~~~~~~~~--~--~~~l~s~~~~~~~~~~  134 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-----QQKRLRNMTSHSARVGSLSW--N--SYILSSGSRSGHIHHH  134 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-----TTEEEEEEECCSSCEEEEEE--E--TTEEEEEETTSEEEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-----CceeEEEecCccceEEEeec--C--CCEEEEEecCCceEee
Confidence            4677889999999999999999999999999998     66888999999998887665  4  6789999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee----
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT----  161 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~----  161 (240)
                      +.....      ..+..+..|...+..+.|++  ++.++++++.|++|++||+++.........  ....+...+.    
T Consensus       135 ~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~v~~~~~  204 (318)
T 4ggc_A          135 DVRVAE------HHVATLSGHSQEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQ--TFTQHQGAVKAVAW  204 (318)
T ss_dssp             ETTSSS------CEEEEEECCSSCEEEEEECT--TSSEEEEEETTSCEEEEESSCBTTBSCCSE--EECCCCSCEEEEEE
T ss_pred             ecCCCc------eeEEEEcCccCceEEEEEcC--CCCEEEEEecCcceeEEECCCCccccccee--eecccCCceEEEEe
Confidence            986542      56777888999999999988  999999999999999999976432111100  0000000000    


Q ss_pred             -c-----------------------------cccccceeeeEEEeCCCCCCCCceEEEEe--cCCCCCCCeEEEEEeecC
Q 026295          162 -M-----------------------------FRKASCISASISWNPQKGENQGSSFVLGF--NSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       162 -~-----------------------------~~~~~~~~~~v~~~p~~~~~~~~~l~~~~--~dd~~~~~~i~iw~~~~~  209 (240)
                       +                             .......+..+.|+|.+.     .+++++  .|     +.|+|||+++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~sg~~d-----~~i~iwd~~~~  274 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-----ELISGHGFAQ-----NQLVIWKYPTM  274 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT-----EEEEEECTTT-----CCEEEEETTTC
T ss_pred             cCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc-----ceEEEEEcCC-----CEEEEEECCCC
Confidence             0                             000112445777888876     455443  56     99999998875


Q ss_pred             CCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          210 HNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       210 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .    ....+.   +|.+.|++|+|+||+.
T Consensus       275 ~----~~~~l~---gH~~~V~~l~~spdg~  297 (318)
T 4ggc_A          275 A----KVAELK---GHTSRVLSLTMSPDGA  297 (318)
T ss_dssp             C----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             c----EEEEEc---CCCCCEEEEEEcCCCC
Confidence            4    334444   6888999999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.94  E-value=3.1e-25  Score=185.89  Aligned_cols=191  Identities=13%  Similarity=0.222  Sum_probs=156.8

Q ss_pred             hhcccccc-eEEEEECC--CCCEEEEEeCCCcEEEEeCCCCC---CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295            4 AVATLDKG-TTSSSWNY--CGQRLATGSTDGTLSIFDSPDPS---SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         4 ~~~~h~~~-v~~~~~s~--~~~~l~~~~~d~~i~iw~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      .+..|.+. |++++|+|  ++++|++|+.||.|+||++....   ....+.+..+..|...|.+++|+|+  ++++++++
T Consensus        58 ~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~  135 (615)
T 1pgu_A           58 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFE--GRRLCVVG  135 (615)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTT--SSEEEEEE
T ss_pred             EEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCC--CCEEEEec
Confidence            46779999 99999999  99999999999999999996110   0012567778889999999999999  99999999


Q ss_pred             cC----CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           78 SD----GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        78 ~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      .+    +.|++||.  +       ..+..+..|...|.+++|+|  ++. .+++++.|+.|++||+.+      .+....
T Consensus       136 ~~~~~~~~v~~~d~--~-------~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~------~~~~~~  198 (615)
T 1pgu_A          136 EGRDNFGVFISWDS--G-------NSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPP------FKFSAS  198 (615)
T ss_dssp             CCSSCSEEEEETTT--C-------CEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTT------BEEEEE
T ss_pred             cCCCCccEEEEEEC--C-------CcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCC------cceeee
Confidence            87    68999983  3       67788889999999999999  886 799999999999999887      677777


Q ss_pred             eecccc---eeeccccccceeeeEEEeCC-CCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEee-ecCCCCCC
Q 026295          153 FQNAID---SVTMFRKASCISASISWNPQ-KGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL-ALPEDRSD  227 (240)
Q Consensus       153 ~~~~~~---~v~~~~~~~~~~~~v~~~p~-~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~-~~~~~h~~  227 (240)
                      +..|..   .+.          +++|+|+ +.     +|++++.|     +.|++||+.++.    ....+ ....+|..
T Consensus       199 ~~~~~~~~~~v~----------~~~~~~~~~~-----~l~~~~~d-----g~i~vwd~~~~~----~~~~~~~~~~~~~~  254 (615)
T 1pgu_A          199 DRTHHKQGSFVR----------DVEFSPDSGE-----FVITVGSD-----RKISCFDGKSGE----FLKYIEDDQEPVQG  254 (615)
T ss_dssp             ECSSSCTTCCEE----------EEEECSTTCC-----EEEEEETT-----CCEEEEETTTCC----EEEECCBTTBCCCS
T ss_pred             ecccCCCCceEE----------EEEECCCCCC-----EEEEEeCC-----CeEEEEECCCCC----EeEEecccccccCC
Confidence            777766   666          9999999 76     89999998     999999987654    22222 11115778


Q ss_pred             ceEEEEEecCC
Q 026295          228 EVYAVAWALNI  238 (240)
Q Consensus       228 ~v~~v~~sp~~  238 (240)
                      .|++++|+ ++
T Consensus       255 ~v~~~~~~-~~  264 (615)
T 1pgu_A          255 GIFALSWL-DS  264 (615)
T ss_dssp             CEEEEEES-SS
T ss_pred             ceEEEEEc-CC
Confidence            99999998 65

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.2e-26  Score=200.76  Aligned_cols=201  Identities=11%  Similarity=0.129  Sum_probs=146.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEE-EEeEee-----ecCccEEEEEEcCCCCCCEEEEEec
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFT-CNLKTK-----VHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      +.+|...+.+++|+|++++|++|+.|++|++||+......... ....+.     +|...|.+++|+|+  +++|++++.
T Consensus       431 l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd--g~~LAsgs~  508 (902)
T 2oaj_A          431 LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE--TLELAVSIE  508 (902)
T ss_dssp             CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT--TTEEEEEET
T ss_pred             ccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCC--CCeEEEEec
Confidence            5667777888889999999999999999999999743210100 001121     78899999999999  999999999


Q ss_pred             CCeEEEEEeeeccCC--------------------------------------CcccEEEEEeeeccccEEeEEEeecCC
Q 026295           79 DGSLLLWEEIVEDAQ--------------------------------------PLQWKLCKSFESTSTQVLDVQFGVSST  120 (240)
Q Consensus        79 d~~v~iwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~  120 (240)
                      |++|+||++..+...                                      ...++++..+.+|...|++++|+|  +
T Consensus       509 DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp--d  586 (902)
T 2oaj_A          509 TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN--I  586 (902)
T ss_dssp             TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB--T
T ss_pred             CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC--C
Confidence            999999999765100                                      001356778888999999999999  9


Q ss_pred             CcEEEEEeCCCcEEEEEecCcccccceeEEe-----eee-cccceeeccccccceeeeEEEe-----CCCCCCCCceEEE
Q 026295          121 SLKLVAAYSDGHVKVYELLDPLILKNWQLQA-----EFQ-NAIDSVTMFRKASCISASISWN-----PQKGENQGSSFVL  189 (240)
Q Consensus       121 ~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-----~~~-~~~~~v~~~~~~~~~~~~v~~~-----p~~~~~~~~~l~~  189 (240)
                      | +||+|+.|++|++||++++      ..+.     .+. .|...|.          +++|+     |++.  .+.+|++
T Consensus       587 G-~lAsgs~D~tv~lwd~~~~------~~~~~~~~~~~~~gh~~~V~----------sv~Fs~~~~~~Dg~--~~~~l~s  647 (902)
T 2oaj_A          587 G-FVGIAYAAGSLMLIDRRGP------AIIYMENIREISGAQSACVT----------CIEFVIMEYGDDGY--SSILMVC  647 (902)
T ss_dssp             S-EEEEEETTSEEEEEETTTT------EEEEEEEGGGTCSSCCCCEE----------EEEEEEEECTTSSS--EEEEEEE
T ss_pred             c-EEEEEeCCCcEEEEECCCC------eEEEEeehhHhccccccceE----------EEEEEEEecCCCCC--cceEEEE
Confidence            9 9999999999999998763      2221     222 4444455          99999     8751  1238999


Q ss_pred             EecCCCCCCCeEEEEEe---ecCCCCcceeEeeecCC--CCCCceEEEE-EecC
Q 026295          190 GFNSDTPQLNSSKVWEF---DEAHNRWLPVAELALPE--DRSDEVYAVA-WALN  237 (240)
Q Consensus       190 ~~~dd~~~~~~i~iw~~---~~~~~~~~~~~~~~~~~--~h~~~v~~v~-~sp~  237 (240)
                      |+.|     ++|++||+   .++..    ...+.++.  .|.++|..++ |+.+
T Consensus       648 gs~D-----~tv~~wd~~p~~~g~~----~~~~~~~~~~~~~~~v~~i~~~~~~  692 (902)
T 2oaj_A          648 GTDM-----GEVITYKILPASGGKF----DVQLMDITNVTSKGPIHKIDAFSKE  692 (902)
T ss_dssp             EETT-----SEEEEEEEEECGGGCE----EEEEEEEEECCSSCCCCEEEEEETT
T ss_pred             EecC-----CcEEEEEEecCCCCcE----EEEecCceecCCCCceEEEEeEecC
Confidence            9999     99999999   44332    22222221  2456888887 7743

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-24  Score=167.19  Aligned_cols=178  Identities=14%  Similarity=0.217  Sum_probs=150.4

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcC-CCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVP-PEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v   82 (240)
                      .+..|...|.+++|  ++++|++++.|+.|++||..       +....+..|...+.++.|.| +  +.++++++.|+.|
T Consensus        99 ~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-------~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d~~i  167 (313)
T 3odt_A           99 TLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-------SLVYNLQAHNASVWDAKVVSFS--ENKFLTASADKTI  167 (313)
T ss_dssp             EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-------EEEEEEECCSSCEEEEEEEETT--TTEEEEEETTSCE
T ss_pred             chhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-------cEEEecccCCCceeEEEEccCC--CCEEEEEECCCCE
Confidence            35678899999999  67899999999999999933       56777888999999999988 6  8999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      ++||.  .       .....+.. +...+.+++|+|  ++. +++++.||.|++||+++      .+....+..|...+.
T Consensus       168 ~i~d~--~-------~~~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~i~  229 (313)
T 3odt_A          168 KLWQN--D-------KVIKTFSGIHNDVVRHLAVVD--DGH-FISCSNDGLIKLVDMHT------GDVLRTYEGHESFVY  229 (313)
T ss_dssp             EEEET--T-------EEEEEECSSCSSCEEEEEEEE--TTE-EEEEETTSEEEEEETTT------CCEEEEEECCSSCEE
T ss_pred             EEEec--C-------ceEEEEeccCcccEEEEEEcC--CCe-EEEccCCCeEEEEECCc------hhhhhhhhcCCceEE
Confidence            99994  3       56666766 889999999999  888 99999999999999987      567777777777776


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                                +++|+|++      .|++++.|     +.|++||+.+..    ....+.   .|...|++++|+|++
T Consensus       230 ----------~~~~~~~~------~l~~~~~d-----g~v~iwd~~~~~----~~~~~~---~~~~~i~~~~~~~~~  278 (313)
T 3odt_A          230 ----------CIKLLPNG------DIVSCGED-----RTVRIWSKENGS----LKQVIT---LPAISIWSVDCMSNG  278 (313)
T ss_dssp             ----------EEEECTTS------CEEEEETT-----SEEEEECTTTCC----EEEEEE---CSSSCEEEEEECTTS
T ss_pred             ----------EEEEecCC------CEEEEecC-----CEEEEEECCCCc----eeEEEe---ccCceEEEEEEccCC
Confidence                      99999988      48899998     999999988764    233334   466699999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.7e-25  Score=179.46  Aligned_cols=199  Identities=12%  Similarity=0.093  Sum_probs=151.1

Q ss_pred             cccceEEEE--ECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            8 LDKGTTSSS--WNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         8 h~~~v~~~~--~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      +...+.++.  +++++++|++|+.|+.|++||+.     +.+++..+..  |.+.|.+++|+|+  +.+|++++.|+.|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-----~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~~~dg~i~  239 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-----TLERLQIIENSPRHGAVSSICIDEE--CCVLILGTTRGIID  239 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-----TCCEEEEEECCGGGCCEEEEEECTT--SCEEEEEETTSCEE
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-----CCeeeEEEccCCCCCceEEEEECCC--CCEEEEEcCCCeEE
Confidence            456677777  66889999999999999999998     5567788887  8999999999999  99999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEee-eccccEEeEEEeec--CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVS--STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~--~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      +||++.+       +++..+. .+...|.+++|+|.  +++.+|++++.||.|++||+++      .++...+..+...+
T Consensus       240 iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~~~~  306 (437)
T 3gre_A          240 IWDIRFN-------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK------GHCQYAFINSDEQP  306 (437)
T ss_dssp             EEETTTT-------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT------TEEEEEEESSSSCC
T ss_pred             EEEcCCc-------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC------CcEEEEEEcCCCCC
Confidence            9999876       7888776 67789999977763  3678999999999999999987      45666666553322


Q ss_pred             e-----ccc-----------cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE-------
Q 026295          161 T-----MFR-----------KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA-------  217 (240)
Q Consensus       161 ~-----~~~-----------~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~-------  217 (240)
                      .     +.+           .+...+.+++|+ ++.     +|++|+.|     +.|++||+.++........       
T Consensus       307 ~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-----~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~  375 (437)
T 3gre_A          307 SMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK-----ILLTDEAT-----SSIVMFSLNELSSSKAVISPSRFSDV  375 (437)
T ss_dssp             CGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-----EEEEEGGG-----TEEEEEETTCGGGCEEEECC--CCCE
T ss_pred             ccceecccccccccceecccccCCceEEEEEC-Cce-----EEEecCCC-----CeEEEEECCCcccceEEecccccCce
Confidence            2     110           133346689999 444     89999999     9999999987654322210       


Q ss_pred             -----------------------eeecCCCCCCceEEEEEecC
Q 026295          218 -----------------------ELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       218 -----------------------~~~~~~~h~~~v~~v~~sp~  237 (240)
                                             .......|.+.|++++|+|+
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~  418 (437)
T 3gre_A          376 FIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEV  418 (437)
T ss_dssp             EEEEEEETTEEEEEEECC-------------CCCEEEEEEEES
T ss_pred             EEEEEeecceEEEEEecccccccccCcccccccceeeEeeecc
Confidence                                   00111238889999999998

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.94  E-value=1.3e-25  Score=176.65  Aligned_cols=195  Identities=11%  Similarity=0.141  Sum_probs=146.8

Q ss_pred             cccccceEEEEECCC----CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCC--CCEEEEEe
Q 026295            6 ATLDKGTTSSSWNYC----GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEF--GDAVACIC   77 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~----~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~--~~~l~s~~   77 (240)
                      .+|.+.|++++|+|+    ...+++++.++.|+||++....  ....+..+.  .|...|.+++|+|+..  +.+|++++
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~   92 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG--EIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG   92 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG--CEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc--EEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence            469999999999984    4566666667799999998321  122222222  2667899999998822  45899999


Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee---e
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF---Q  154 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~---~  154 (240)
                      .|+.|++||+..+       +.+..+..|...|.+++|+|. ++.+|++++.||.|++||+++      .+....+   .
T Consensus        93 ~dg~i~v~d~~~~-------~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~~~~  158 (366)
T 3k26_A           93 SRGIIRIINPITM-------QCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQT------DTLVAIFGGVE  158 (366)
T ss_dssp             TTCEEEEECTTTC-------CEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTT------TEEEEEECSTT
T ss_pred             CCCEEEEEEchhc-------eEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeec------CeEEEEecccc
Confidence            9999999999766       778888899999999999873 567899999999999999987      4555555   4


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCccee------------------
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPV------------------  216 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~------------------  216 (240)
                      .+...+.          +++|+|++.     +|++++.|     +.|++||+++........                  
T Consensus       159 ~~~~~v~----------~~~~~~~~~-----~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (366)
T 3k26_A          159 GHRDEVL----------SADYDLLGE-----KIMSCGMD-----HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQK  218 (366)
T ss_dssp             SCSSCEE----------EEEECTTSS-----EEEEEETT-----SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEE
T ss_pred             cccCcee----------EEEECCCCC-----EEEEecCC-----CCEEEEECCCCccccccceeEEecCCCCccccccee
Confidence            5555555          999999887     89999998     999999997643211110                  


Q ss_pred             ---EeeecCCCCCCceEEEEEec
Q 026295          217 ---AELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       217 ---~~~~~~~~h~~~v~~v~~sp  236 (240)
                         ..+....+|...|++++|++
T Consensus       219 ~~~~~~~~~~~~~~~v~~~~~~~  241 (366)
T 3k26_A          219 IHFPDFSTRDIHRNYVDCVRWLG  241 (366)
T ss_dssp             ECCCSEEECSSCSSCCCEEEEET
T ss_pred             eccCccccccCCcceEEEEEEcC
Confidence               01112234888999999983

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.3e-25  Score=172.59  Aligned_cols=158  Identities=11%  Similarity=0.108  Sum_probs=118.9

Q ss_pred             cccccceEEEEECC---CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc---cEEEEEEcCCCCCCEE------
Q 026295            6 ATLDKGTTSSSWNY---CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG---AILKVVWVPPEFGDAV------   73 (240)
Q Consensus         6 ~~h~~~v~~~~~s~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l------   73 (240)
                      ..|...+..++|++   ++.+||+|+.|++|+|||+.     +++++.++.+|..   .+.+++|+|+  |.++      
T Consensus       175 ~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-----TGk~l~tL~g~~~~v~~v~~vafSpd--G~~lvs~s~~  247 (356)
T 2w18_A          175 FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-----TGQLLKKMHIDDSYQASVCHKAYSEM--GLLFIVLSHP  247 (356)
T ss_dssp             EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-----TCCEEEEEECCC---CCCEEEEEEET--TEEEEEEC--
T ss_pred             ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-----CCcEEEEEcCCCcceeeeEEEEECCC--CCEEEEeccC
Confidence            34666666677777   56789999999999999998     7788888886543   5777899998  8876      


Q ss_pred             ------EEEecCCeEEEEEeeeccCCCcccEEEEEe-----eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcc
Q 026295           74 ------ACICSDGSLLLWEEIVEDAQPLQWKLCKSF-----ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPL  142 (240)
Q Consensus        74 ------~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~  142 (240)
                            ++|+.|++|++||..++       +.+..+     .+|...+.  ..+.  ++.++++++.|++|+|||+.+  
T Consensus       248 ~~~w~laSGs~D~tIklWd~~tg-------k~l~v~~~~~p~Gh~~~~l--sg~~--sg~~lASgS~DgTIkIWDl~t--  314 (356)
T 2w18_A          248 CAKESESLRSPVFQLIVINPKTT-------LSVGVMLYCLPPGQAGRFL--EGDV--KDHCAAAILTSGTIAIWDLLL--  314 (356)
T ss_dssp             ----------CCEEEEEEETTTT-------EEEEEEEECCCTTCCCCEE--EEEE--ETTEEEEEETTSCEEEEETTT--
T ss_pred             CCcceeeccCCCcEEEEEECCCC-------EEEEEEEeeccCCCcceeE--cccc--CCCEEEEEcCCCcEEEEECCC--
Confidence                  56788999999999766       655544     24444433  3333  577899999999999999988  


Q ss_pred             cccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          143 ILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       143 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                          +++..++..|...+.         ..++|+|++.     +|++|+.|     ++|+|||+
T Consensus       315 ----Gk~l~tL~gH~~~vv---------s~vafSPDG~-----~LaSGS~D-----~TIklWd~  355 (356)
T 2w18_A          315 ----GQCTALLPPVSDQHW---------SFVKWSGTDS-----HLLAGQKD-----GNIFVYHY  355 (356)
T ss_dssp             ----CSEEEEECCC--CCC---------CEEEECSSSS-----EEEEECTT-----SCEEEEEE
T ss_pred             ----CcEEEEecCCCCCeE---------EEEEECCCCC-----EEEEEECC-----CcEEEecC
Confidence                688888887765433         1589999988     89999998     99999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.94  E-value=1.4e-24  Score=171.18  Aligned_cols=175  Identities=11%  Similarity=0.082  Sum_probs=121.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC---------C---------------------------CcEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS---------S---------------------------SSFTC   48 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~---------~---------------------------~~~~~   48 (240)
                      +..|.+.|.+++|+|+|++|++|+.++ ++||++....         .                           .+.++
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~   93 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQD   93 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcE
Confidence            367889999999999999999887764 6788754210         0                           01223


Q ss_pred             EeEeeecCccEEEEEEcCCC---------------CC------------------CEEEE--EecCCeEEEEEeeeccCC
Q 026295           49 NLKTKVHAGAILKVVWVPPE---------------FG------------------DAVAC--ICSDGSLLLWEEIVEDAQ   93 (240)
Q Consensus        49 ~~~~~~h~~~v~~~~~~~~~---------------~~------------------~~l~s--~~~d~~v~iwd~~~~~~~   93 (240)
                      +..+. +...|.++.|+++.               .+                  .+++.  ++.||.|++||+..+...
T Consensus        94 ~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~  172 (355)
T 3vu4_A           94 VSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA  172 (355)
T ss_dssp             EEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----
T ss_pred             EEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcc
Confidence            33333 45678888886640               01                  12333  456777777777643100


Q ss_pred             --------CcccEE-EEEeeeccccEEeEEEeecCCCcEEEEEeCCCc-EEEEEecCcccccceeEEeeee-c-ccceee
Q 026295           94 --------PLQWKL-CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH-VKVYELLDPLILKNWQLQAEFQ-N-AIDSVT  161 (240)
Q Consensus        94 --------~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-v~iw~~~~~~~~~~~~~~~~~~-~-~~~~v~  161 (240)
                              .....+ +..+.+|...|.+++|+|  ++.+|++++.|++ |++||+++      ++++..+. + |...+.
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~--~g~~l~s~s~d~~~v~iwd~~~------~~~~~~~~~g~h~~~v~  244 (355)
T 3vu4_A          173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR--KSDMVATCSQDGTIIRVFKTED------GVLVREFRRGLDRADVV  244 (355)
T ss_dssp             --------------CCEEECCCSSCEEEEEECT--TSSEEEEEETTCSEEEEEETTT------CCEEEEEECTTCCSCEE
T ss_pred             ccccccccccccCcccEEEEccCCceEEEEECC--CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCCCCcEE
Confidence                    000112 677888999999999999  9999999999998 99999987      56777776 3 666666


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                                +++|+|++.     +|++++.|     +.|+|||+...
T Consensus       245 ----------~~~~s~~~~-----~l~s~s~d-----~~v~iw~~~~~  272 (355)
T 3vu4_A          245 ----------DMKWSTDGS-----KLAVVSDK-----WTLHVFEIFND  272 (355)
T ss_dssp             ----------EEEECTTSC-----EEEEEETT-----CEEEEEESSCC
T ss_pred             ----------EEEECCCCC-----EEEEEECC-----CEEEEEEccCC
Confidence                      999999987     89999999     99999999764

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.94  E-value=4e-24  Score=172.09  Aligned_cols=180  Identities=21%  Similarity=0.336  Sum_probs=147.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE--eeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK--TKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ++.|+||++ ++||+|. |++|+|||..     ++++...  +.+|...|++|+|+|+  |.+|++|+.|+.|++||+..
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~-----tg~~~~~~~~~~~~~~V~sv~fspd--g~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSAS-----SGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETT-----TCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSCEEEEETTT
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECC-----CCCEEEEEEecCCCCcEEEEEECCC--CCEEEEEECCCeEEEEEcCC
Confidence            567999975 5888876 8999999998     4444444  4467888999999999  99999999999999999987


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      +       +++..+.+|...+.++++    ++.+|++++.|+.+++||....     ...+..+..|...+.        
T Consensus       179 ~-------~~~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~-----~~~~~~~~~h~~~~~--------  234 (420)
T 4gga_A          179 Q-------KRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVA-----EHHVATLSGHSQEVC--------  234 (420)
T ss_dssp             T-------EEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSS-----SCEEEEEECCSSCEE--------
T ss_pred             C-------cEEEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeeccc-----ceeeEEeccccccee--------
Confidence            6       889999999999988877    5678999999999999998763     344556667766665        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                        .+.|+|++.     ++++++.|     +.|+||+..++...........   .|...|.+++|+|+..
T Consensus       235 --~~~~~~~g~-----~l~s~~~D-----~~v~i~~~~~~~~~~~~~~~~~---~~~~~V~~~~~~p~~~  289 (420)
T 4gga_A          235 --GLRWAPDGR-----HLASGGND-----NLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAVAWCPWQS  289 (420)
T ss_dssp             --EEEECTTSS-----EEEEEETT-----SCEEEEESSCCSSCSCCSEEEC---CCSSCEEEEEECTTCT
T ss_pred             --eeeecCCCC-----eeeeeecc-----ccceEEeeccccccceeeeeec---ccCCceeeeeeCCCcc
Confidence              899999987     89999999     9999999987765544433333   5777999999999764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-25  Score=175.30  Aligned_cols=185  Identities=9%  Similarity=0.001  Sum_probs=134.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC----CCcEEEEeEee-ecCccEEEEEEcC--CCCCCEEEEEecCCeE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS----SSSFTCNLKTK-VHAGAILKVVWVP--PEFGDAVACICSDGSL   82 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~----~~~~~~~~~~~-~h~~~v~~~~~~~--~~~~~~l~s~~~d~~v   82 (240)
                      ..|.++.|+|+   +++++.|++|++|+.....    ..+.+.+..+. .|.+.|.+++|+|  +  +.++++++.|+.|
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~l~s~s~dg~i  151 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVN--TEYFIWADNRGTI  151 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC-----CCEEEEEETTCCE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCC--CCEEEEEeCCCcE
Confidence            45667778887   9999999999999876210    00122233333 6778899999999  8  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE-eeeec-ccce
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ-AEFQN-AIDS  159 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~-~~~~  159 (240)
                      ++||++.+       ++..... .+...+.+++|+|  ++.+|++|+.||.|++||+++.      +.. ..+.. |...
T Consensus       152 ~~wd~~~~-------~~~~~~~~~~~~~i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~------~~~~~~~~~~h~~~  216 (343)
T 3lrv_A          152 GFQSYEDD-------SQYIVHSAKSDVEYSSGVLHK--DSLLLALYSPDGILDVYNLSSP------DQASSRFPVDEEAK  216 (343)
T ss_dssp             EEEESSSS-------CEEEEECCCSSCCCCEEEECT--TSCEEEEECTTSCEEEEESSCT------TSCCEECCCCTTSC
T ss_pred             EEEECCCC-------cEEEEEecCCCCceEEEEECC--CCCEEEEEcCCCEEEEEECCCC------CCCccEEeccCCCC
Confidence            99999876       5555443 3455799999999  9999999999999999999873      333 44555 6666


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE--EEEEecC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY--AVAWALN  237 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~--~v~~sp~  237 (240)
                      +.          +++|+|++.     +|++++ +     +.|++||++........    ..+..|...+.  +++|+|+
T Consensus       217 v~----------~l~fs~~g~-----~l~s~~-~-----~~v~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          217 IK----------EVKFADNGY-----WMVVEC-D-----QTVVCFDLRKDVGTLAY----PTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             EE----------EEEECTTSS-----EEEEEE-S-----SBEEEEETTSSTTCBSS----CCCBC-----CCEEEEECTT
T ss_pred             EE----------EEEEeCCCC-----EEEEEe-C-----CeEEEEEcCCCCcceee----cccccccccccceEEEECCC
Confidence            66          999999987     888888 6     89999999876543222    22222333444  6999998


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       272 g~  273 (343)
T 3lrv_A          272 GK  273 (343)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=6e-24  Score=164.24  Aligned_cols=180  Identities=21%  Similarity=0.334  Sum_probs=144.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe--eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT--KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      +++|+||+++ +||+|. |++|+|||+.     +++++..+  .+|...|.+++|+|+  +++|++|+.|+.|++|++..
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~-----tg~~~~~~~~~~~~~~V~~v~~~~~--~~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSAS-----SGDILQLLQMEQPGEYISSVAWIKE--GNYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETT-----TCCEEEEEECCSTTCCEEEEEECTT--SSEEEEEETTSEEEEEETTT
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECC-----CCCEEEEEEecCCCCeEEEEEECCC--CCEEEEEECCCcEEEeecCC
Confidence            4679999876 777765 8999999998     55555555  467888999999999  99999999999999999987


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      +       +++..+.+|...+.++.+    ++..+++++.++.+++|+....     ......+..|...+.        
T Consensus        99 ~-------~~~~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--------  154 (318)
T 4ggc_A           99 Q-------KRLRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVA-----EHHVATLSGHSQEVC--------  154 (318)
T ss_dssp             T-------EEEEEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSS-----SCEEEEEECCSSCEE--------
T ss_pred             c-------eeEEEecCccceEEEeec----CCCEEEEEecCCceEeeecCCC-----ceeEEEEcCccCceE--------
Confidence            7       888999999888876554    6678999999999999998763     344556666666665        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                        .+.|.+.+.     +|++++.|     +.|++||+.++...........   .|...|.+++|+|+..
T Consensus       155 --~~~~~~~~~-----~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~  209 (318)
T 4ggc_A          155 --GLRWAPDGR-----HLASGGND-----NLVNVWPSAPGEGGWVPLQTFT---QHQGAVKAVAWCPWQS  209 (318)
T ss_dssp             --EEEECTTSS-----EEEEEETT-----SCEEEEESSCBTTBSCCSEEEC---CCCSCEEEEEECTTST
T ss_pred             --EEEEcCCCC-----EEEEEecC-----cceeEEECCCCcccccceeeec---ccCCceEEEEecCCCC
Confidence              889999987     89999999     9999999988765444433333   4666999999999764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.8e-24  Score=174.44  Aligned_cols=199  Identities=8%  Similarity=-0.028  Sum_probs=147.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEE-EEeEeeecCccEEEEEEcCC-CCCCEEEEEecCCeEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFT-CNLKTKVHAGAILKVVWVPP-EFGDAVACICSDGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~-~~~~~l~s~~~d~~v~i   84 (240)
                      .|...|.+++|+|++++|++|+.++.|++|++....  ... ....+.+|...|.+++|+|+ ..+.+|++++.|+.|++
T Consensus       147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~v  224 (450)
T 2vdu_B          147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIP--EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKI  224 (450)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCC--CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEE
T ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcc--cccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEE
Confidence            466889999999999999999999999999997432  111 33367789999999999985 23678999999999999


Q ss_pred             EEeeeccCCCcccEEEEE-eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc--ee-
Q 026295           85 WEEIVEDAQPLQWKLCKS-FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID--SV-  160 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~v-  160 (240)
                      ||+..+       ..+.. +.+|...|.+++|+   ++.+|++++.|++|++||+++      +++...+..+..  .+ 
T Consensus       225 wd~~~~-------~~~~~~~~~h~~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~~  288 (450)
T 2vdu_B          225 SHYPQC-------FIVDKWLFGHKHFVSSICCG---KDYLLLSAGGDDKIFAWDWKT------GKNLSTFDYNSLIKPYL  288 (450)
T ss_dssp             EEESCT-------TCEEEECCCCSSCEEEEEEC---STTEEEEEESSSEEEEEETTT------CCEEEEEECHHHHGGGC
T ss_pred             EECCCC-------ceeeeeecCCCCceEEEEEC---CCCEEEEEeCCCeEEEEECCC------CcEeeeecchhhhhhhh
Confidence            999765       55555 55788999999996   788999999999999999987      455554442210  00 


Q ss_pred             ------------eccccccceeeeEEEeCCCCCCCCceEEEEe-cCCCCCCCeEEEEEe-ecCCCCcceeEeeecCCCCC
Q 026295          161 ------------TMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEF-DEAHNRWLPVAELALPEDRS  226 (240)
Q Consensus       161 ------------~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~-~dd~~~~~~i~iw~~-~~~~~~~~~~~~~~~~~~h~  226 (240)
                                  .........+..++|+|++.     +|++++ .+     +.|+||++ ......+.....+..   | 
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~-----~l~~~~~~d-----~~i~iw~~~~~~~~~l~~~~~~~~---~-  354 (450)
T 2vdu_B          289 NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLP-----FVAFFVEAT-----KCIIILEMSEKQKGDLALKQIITF---P-  354 (450)
T ss_dssp             CTTSBC----------CBCCCEEEEEECSSSS-----EEEEEETTC-----SEEEEEEECSSSTTCEEEEEEEEC---S-
T ss_pred             hhcccccccccccccccceEEEEEEEEeCCCC-----EEEEEECCC-----CeEEEEEeccCCCCceeeccEecc---C-
Confidence                        00001112345899999887     888888 56     99999999 222223344445553   3 


Q ss_pred             CceEEEEEecC
Q 026295          227 DEVYAVAWALN  237 (240)
Q Consensus       227 ~~v~~v~~sp~  237 (240)
                      ..|++++|+|+
T Consensus       355 ~~v~~~~~~~~  365 (450)
T 2vdu_B          355 YNVISLSAHND  365 (450)
T ss_dssp             SCEEEEEEETT
T ss_pred             CceEEEEecCC
Confidence            58999999995

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=9.9e-25  Score=182.81  Aligned_cols=193  Identities=11%  Similarity=0.081  Sum_probs=153.2

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc-EEEEEEcC--CCCCCEEEEEecCCeE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-ILKVVWVP--PEFGDAVACICSDGSL   82 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~--~~~~~~l~s~~~d~~v   82 (240)
                      ..|.+.|.+++|+|++++|++++ ++.|+||++..... ..+....+.+|... |.+++|+|  +  +++|++++.|+.|
T Consensus        15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-~~~~~~~~~~h~~~~v~~~~~sp~~~--~~~l~s~~~dg~v   90 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-KVPPVVQFTGHGSSVVTTVKFSPIKG--SQYLCSGDESGKV   90 (615)
T ss_dssp             CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-SSCSEEEECTTTTSCEEEEEECSSTT--CCEEEEEETTSEE
T ss_pred             CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-ccccceEEecCCCceEEEEEECcCCC--CCEEEEecCCCEE
Confidence            35788999999999999999998 78999999982200 00567788899999 99999999  9  9999999999999


Q ss_pred             EEEEeeeccC-CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecCcccccceeEEeeeeccc
Q 026295           83 LLWEEIVEDA-QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        83 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      ++||+..+.. ..........+..+...|.+++|+|  ++.+|++++.+    +.|.+||.        .+....+..|.
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d~--------~~~~~~~~~~~  160 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWDS--------GNSLGEVSGHS  160 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETTT--------CCEEEECCSCS
T ss_pred             EEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEEC--------CCcceeeecCC
Confidence            9999964300 0001166777888899999999999  99999999988    68888883        34555666777


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC---ceEEEEE
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD---EVYAVAW  234 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~  234 (240)
                      ..+.          +++|+|++..    +|++++.|     +.|++||+.+..    ....+.   +|..   .|++++|
T Consensus       161 ~~v~----------~~~~~~~~~~----~l~~~~~d-----~~v~vwd~~~~~----~~~~~~---~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          161 QRIN----------ACHLKQSRPM----RSMTVGDD-----GSVVFYQGPPFK----FSASDR---THHKQGSFVRDVEF  214 (615)
T ss_dssp             SCEE----------EEEECSSSSC----EEEEEETT-----TEEEEEETTTBE----EEEEEC---SSSCTTCCEEEEEE
T ss_pred             ccEE----------EEEECCCCCc----EEEEEeCC-----CcEEEEeCCCcc----eeeeec---ccCCCCceEEEEEE
Confidence            6666          9999999852    68999998     999999976543    333333   5777   8999999


Q ss_pred             ecC-C
Q 026295          235 ALN-I  238 (240)
Q Consensus       235 sp~-~  238 (240)
                      +|+ +
T Consensus       215 ~~~~~  219 (615)
T 1pgu_A          215 SPDSG  219 (615)
T ss_dssp             CSTTC
T ss_pred             CCCCC
Confidence            999 5

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.5e-25  Score=178.91  Aligned_cols=178  Identities=12%  Similarity=0.131  Sum_probs=120.1

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcC--------CCCCCEEEEEecCCeEE
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVP--------PEFGDAVACICSDGSLL   83 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~~~l~s~~~d~~v~   83 (240)
                      +....+++++.+||+|+.|++|+|||...........+..+.+|.+.|++++|+|        +  +++|++++.|++|+
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d--~~~las~s~D~tv~  169 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLA--EQVIASVGDDCTLI  169 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEE--EEEEEEEETTSEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCC--CCEEEEEECCCeEE
Confidence            3334445567789999999999999997432112234455679999999999997        5  78999999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCcccccceeEEe--------eee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDPLILKNWQLQA--------EFQ  154 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~--------~~~  154 (240)
                      |||+...       .++..+..+...|.+++|+|  ++ .+|++++.|++|++||+++...........        ...
T Consensus       170 ~Wd~~~~-------~~~~~~~~~~~~v~~v~~~p--~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          170 IWRLTDE-------GPILAGYPLSSPGISVQFRP--SNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             EEEEETT-------EEEEEEEECSSCEEEEEEET--TEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             EEECCCC-------ceeeeecCCCCCcEEEEECC--CCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            9999876       77777788889999999999  76 479999999999999998743221110000        000


Q ss_pred             cc-cceeeccccccceeeeEEEe-CCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          155 NA-IDSVTMFRKASCISASISWN-PQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       155 ~~-~~~v~~~~~~~~~~~~v~~~-p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .. .........+...+.++.|. |++.     .|++++.|     +.+++||+....
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~-----~l~s~s~d-----~~i~vwd~~~~~  288 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGS-----GILAMCKS-----GAWLRWNLFANN  288 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTC-----EEEEECTT-----SEEEEEEC----
T ss_pred             cccceeeeecccccccceeeeeecCCCC-----EEEEEeCC-----CCEEEEECccCC
Confidence            00 00000001122244578886 6665     89999998     999999987654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=8.2e-24  Score=171.35  Aligned_cols=182  Identities=15%  Similarity=0.232  Sum_probs=131.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|...|.+++|  ++++|++|+.|+.|++||+.     +.+++..+.+|...|.++.|  +  +.++++++.|+.|++
T Consensus       235 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~d~~i~i  303 (445)
T 2ovr_B          235 LMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-----TETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRV  303 (445)
T ss_dssp             EECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-----GTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEE
T ss_pred             EcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-----CCcEeEEecCCCCceEEEEE--C--CCEEEEEeCCCeEEE
Confidence            4567777777777  56777788888888888776     55667777778888888887  4  677888888888888


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec---ccceee
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN---AIDSVT  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~---~~~~v~  161 (240)
                      ||+..+       +++..+..|...+.++.+    ++.++++++.||.|++||+++      .+....+..   +...+.
T Consensus       304 ~d~~~~-------~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          304 WDVETG-------NCIHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKHQSAVT  366 (445)
T ss_dssp             EETTTC-------CEEEEECCCCSCEEEEEE----ETTEEEEEETTSCEEEEETTT------CCEEEEECSTTSCSSCEE
T ss_pred             EECCCC-------CEEEEEcCCcccEEEEEE----eCCEEEEEeCCCeEEEEECCC------CcEEEEEccCCCCCCCEE
Confidence            887665       667777777777777666    345788888888888888876      455555543   333343


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                                +++|++  .     +|++|+.|     |.|++||+.++........  ....+|...|++++|+|++
T Consensus       367 ----------~~~~~~--~-----~l~s~~~d-----g~v~iwd~~~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~  419 (445)
T 2ovr_B          367 ----------CLQFNK--N-----FVITSSDD-----GTVKLWDLKTGEFIRNLVT--LESGGSGGVVWRIRASNTK  419 (445)
T ss_dssp             ----------EEEECS--S-----EEEEEETT-----SEEEEEETTTCCEEEEEEE--CTTGGGTCEEEEEEECSSE
T ss_pred             ----------EEEECC--C-----EEEEEeCC-----CeEEEEECCCCceeeeeec--cccCCCCceEEEEEecCCE
Confidence                      888864  3     89999999     9999999987653221111  1123577899999999985

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.93  E-value=3.1e-24  Score=164.91  Aligned_cols=182  Identities=10%  Similarity=0.050  Sum_probs=125.2

Q ss_pred             cceEEEEECCC----CCEEEEEeC--------------------CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEc
Q 026295           10 KGTTSSSWNYC----GQRLATGST--------------------DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWV   65 (240)
Q Consensus        10 ~~v~~~~~s~~----~~~l~~~~~--------------------d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~   65 (240)
                      ..|++++|+|+    ++.+++++.                    |+.|++|++..    .++.+..+.+|...+..++|+
T Consensus       112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~----dG~~~~s~~~~~~~v~~l~fs  187 (356)
T 2w18_A          112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE----DGGGKENQFLMPPEETILTFA  187 (356)
T ss_dssp             EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT----TSCEEEEEEECCCSSCEEEEE
T ss_pred             cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC----CCceeeeeccCCCceeeEEee
Confidence            46888888888    777777663                    78888888853    345666777888888888888


Q ss_pred             C-CCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecc---ccEEeEEEeecCCCcEE------------EEEeC
Q 026295           66 P-PEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTS---TQVLDVQFGVSSTSLKL------------VAAYS  129 (240)
Q Consensus        66 ~-~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~l------------~~~~~  129 (240)
                      + +..+.+|++++.|++|+|||+.++       +++.++.++.   ..+.+++|+|  +|.++            ++|+.
T Consensus       188 ~~~g~~~~LaSgS~D~TIkIWDl~TG-------k~l~tL~g~~~~v~~v~~vafSp--dG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          188 EVQGMQEALLGTTIMNNIVIWNLKTG-------QLLKKMHIDDSYQASVCHKAYSE--MGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             EEETSTTEEEEEETTSEEEEEETTTC-------CEEEEEECCC---CCCEEEEEEE--TTEEEEEEC------------C
T ss_pred             ccCCCCceEEEecCCCcEEEEECCCC-------cEEEEEcCCCcceeeeEEEEECC--CCCEEEEeccCCCcceeeccCC
Confidence            8 212789999999999999999877       8888887643   3567779999  89876            56788


Q ss_pred             CCcEEEEEecCcccccceeEEeeee-----cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          130 DGHVKVYELLDPLILKNWQLQAEFQ-----NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       130 dg~v~iw~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                      |++|++||..+      ++.+..+.     +|...+.          +.+++  +.     ++++|+.|     ++|+||
T Consensus       259 D~tIklWd~~t------gk~l~v~~~~~p~Gh~~~~l----------sg~~s--g~-----~lASgS~D-----gTIkIW  310 (356)
T 2w18_A          259 VFQLIVINPKT------TLSVGVMLYCLPPGQAGRFL----------EGDVK--DH-----CAAAILTS-----GTIAIW  310 (356)
T ss_dssp             CEEEEEEETTT------TEEEEEEEECCCTTCCCCEE----------EEEEE--TT-----EEEEEETT-----SCEEEE
T ss_pred             CcEEEEEECCC------CEEEEEEEeeccCCCcceeE----------ccccC--CC-----EEEEEcCC-----CcEEEE
Confidence            99999999987      34433321     1211111          22333  33     78888888     999999


Q ss_pred             EeecCCCCcceeEeeecCCCCCCceE-EEEEecCCC
Q 026295          205 EFDEAHNRWLPVAELALPEDRSDEVY-AVAWALNIG  239 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~  239 (240)
                      |+.+++.    ...+.   +|...+. .++||||+.
T Consensus       311 Dl~tGk~----l~tL~---gH~~~vvs~vafSPDG~  339 (356)
T 2w18_A          311 DLLLGQC----TALLP---PVSDQHWSFVKWSGTDS  339 (356)
T ss_dssp             ETTTCSE----EEEEC---CC--CCCCEEEECSSSS
T ss_pred             ECCCCcE----EEEec---CCCCCeEEEEEECCCCC
Confidence            9988653    33344   4666655 589999974

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.93  E-value=3.8e-23  Score=167.45  Aligned_cols=179  Identities=17%  Similarity=0.286  Sum_probs=120.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|...|.+++|+  +++|++|+.|+.|++||+.     +.+.+..+.+|...|.++.|  +  +.++++++.|+.|++
T Consensus       195 ~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~-----~~~~~~~~~~~~~~v~~~~~--~--~~~l~~~~~dg~i~i  263 (445)
T 2ovr_B          195 LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIE-----TGQCLHVLMGHVAAVRCVQY--D--GRRVVSGAYDFMVKV  263 (445)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESS-----SCCEEEEEECCSSCEEEEEE--C--SSCEEEEETTSCEEE
T ss_pred             ECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECC-----CCcEEEEEcCCcccEEEEEE--C--CCEEEEEcCCCEEEE
Confidence            44566666666663  4556666666666666665     33455566666667777766  3  566667777777777


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||+..+       +++..+..|...|.+++|    ++.++++++.||.|++||+++      .+....+..+...+.   
T Consensus       264 wd~~~~-------~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~~v~---  323 (445)
T 2ovr_B          264 WDPETE-------TCLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTS---  323 (445)
T ss_dssp             EEGGGT-------EEEEEECCCSSCEEEEEE----CSSEEEEEETTSCEEEEETTT------CCEEEEECCCCSCEE---
T ss_pred             EECCCC-------cEeEEecCCCCceEEEEE----CCCEEEEEeCCCeEEEEECCC------CCEEEEEcCCcccEE---
Confidence            776555       666667777777777776    556677777777777777766      455555555544443   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                             ++.++  +.     +|++|+.|     +.|++||+.++.    ....+..+..|...|++++|+++
T Consensus       324 -------~~~~~--~~-----~l~~~~~d-----g~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~  373 (445)
T 2ovr_B          324 -------GMELK--DN-----ILVSGNAD-----STVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNKN  373 (445)
T ss_dssp             -------EEEEE--TT-----EEEEEETT-----SCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECSS
T ss_pred             -------EEEEe--CC-----EEEEEeCC-----CeEEEEECCCCc----EEEEEccCCCCCCCEEEEEECCC
Confidence                   55554  33     79999998     999999997654    34455555568889999999763

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-24  Score=177.39  Aligned_cols=189  Identities=11%  Similarity=0.142  Sum_probs=135.3

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCC--C----------------------cEEEEeEee-ecCccEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSS--S----------------------SFTCNLKTK-VHAGAIL   60 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~--~----------------------~~~~~~~~~-~h~~~v~   60 (240)
                      ++....|.+++|+|||+++|+++.|++|+  |......  +                      +.+....+. .|...|.
T Consensus        12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~   89 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR   89 (588)
T ss_dssp             CCCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE
T ss_pred             hHhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE
Confidence            45667999999999999999999999996  4321100  0                      001001111 4577899


Q ss_pred             EEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccc-----cEEeEEEeecCCCcEEEEEeCCCcEEE
Q 026295           61 KVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTST-----QVLDVQFGVSSTSLKLVAAYSDGHVKV  135 (240)
Q Consensus        61 ~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~l~~~~~dg~v~i  135 (240)
                      +++|+|+  |.+|++++.||.|++||..         .++..+. |..     .|.+++|+|  +|++|++|+.||+|++
T Consensus        90 ~vawSPd--G~~LAs~s~dg~V~iwd~~---------~~l~~l~-~~~~~~~~sv~svafSP--DG~~LAsgs~DGtVkI  155 (588)
T 2j04_A           90 VCKPSPI--DDWMAVLSNNGNVSVFKDN---------KMLTNLD-SKGNLSSRTYHCFEWNP--IESSIVVGNEDGELQF  155 (588)
T ss_dssp             EEEECSS--SSCEEEEETTSCEEEEETT---------EEEEECC-CSSCSTTTCEEEEEECS--SSSCEEEEETTSEEEE
T ss_pred             EEEECCC--CCEEEEEeCCCcEEEEeCC---------ceeeecc-CCCccccccEEEEEEcC--CCCEEEEEcCCCEEEE
Confidence            9999999  9999999999999999953         3555566 544     599999999  9999999999999999


Q ss_pred             EEecCccc-ccceeEEeee----ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          136 YELLDPLI-LKNWQLQAEF----QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       136 w~~~~~~~-~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      ||+.+... ..++-....+    .+|..+|.          +++|+|++       +++++.|     +.|++|++....
T Consensus       156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~----------sVawSPdg-------Laass~D-----~tVrlWd~~~~~  213 (588)
T 2j04_A          156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVT----------HIVWYEDV-------LVAALSN-----NSVFSMTVSASS  213 (588)
T ss_dssp             EECCCCTTTCCCCEEEEEEECSCTTCCCCEE----------EEEEETTE-------EEEEETT-----CCEEEECCCSSS
T ss_pred             EECCCCccccccceeeeeeecccccccccEE----------EEEEcCCc-------EEEEeCC-----CeEEEEECCCCc
Confidence            99986210 0011134454    33444555          99999975       6778888     999999998765


Q ss_pred             CCcceeEeeecCCCCCCceEEEEEe
Q 026295          211 NRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      .. .....+.  .+|...|.+|+|+
T Consensus       214 ~~-~~~~tL~--~~h~~~V~svaFs  235 (588)
T 2j04_A          214 HQ-PVSRMIQ--NASRRKITDLKIV  235 (588)
T ss_dssp             SC-CCEEEEE--CCCSSCCCCEEEE
T ss_pred             cc-cceeeec--ccccCcEEEEEEE
Confidence            22 1112231  1466799999998

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=5.1e-23  Score=166.32  Aligned_cols=179  Identities=15%  Similarity=0.238  Sum_probs=146.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      .+..|.+.|.+++|  ++++|++|+.||.|++||+.     +.+.+..+.+|...|.+++|+    +.++++++.|+.|+
T Consensus       168 ~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~-----~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~  236 (435)
T 1p22_A          168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN-----TGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIA  236 (435)
T ss_dssp             EECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS-----SCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEE
T ss_pred             EEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC-----CCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEE
Confidence            46679999999998  78899999999999999998     557788888999999999994    45899999999999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +||+.....    ......+.+|...|.+++|    ++.++++++.||.|++||+++      .+....+..|...+.  
T Consensus       237 vwd~~~~~~----~~~~~~~~~~~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~v~--  300 (435)
T 1p22_A          237 VWDMASPTD----ITLRRVLVGHRAAVNVVDF----DDKYIVSASGDRTIKVWNTST------CEFVRTLNGHKRGIA--  300 (435)
T ss_dssp             EEECSSSSC----CEEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEE--
T ss_pred             EEeCCCCCC----ceeeeEecCCCCcEEEEEe----CCCEEEEEeCCCeEEEEECCc------CcEEEEEcCCCCcEE--
Confidence            999976521    2344667788999999998    567899999999999999987      567777777776666  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                              ++.|++  .     +|++|+.|     +.|++||++++.    ....+.   +|...|++++|++
T Consensus       301 --------~~~~~~--~-----~l~~g~~d-----g~i~iwd~~~~~----~~~~~~---~h~~~v~~~~~~~  346 (435)
T 1p22_A          301 --------CLQYRD--R-----LVVSGSSD-----NTIRLWDIECGA----CLRVLE---GHEELVRCIRFDN  346 (435)
T ss_dssp             --------EEEEET--T-----EEEEEETT-----SCEEEEETTTCC----EEEEEC---CCSSCEEEEECCS
T ss_pred             --------EEEeCC--C-----EEEEEeCC-----CeEEEEECCCCC----EEEEEe---CCcCcEEEEEecC
Confidence                    788853  3     89999999     999999998754    233333   5777999999943

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.92  E-value=6.1e-23  Score=165.83  Aligned_cols=176  Identities=17%  Similarity=0.313  Sum_probs=142.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|...|.+++|  ++++|++|+.||.|++||+.     +.+.+..+.+|.+.|.+++|  +  +.++++++.||.|++||
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~-----~~~~~~~~~~h~~~v~~l~~--~--~~~l~sg~~dg~i~vwd  199 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-----TLECKRILTGHTGSVLCLQY--D--ERVIITGSSDSTVRVWD  199 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-----SCCEEEEECCCSSCEEEEEC--C--SSEEEEEETTSCEEEEE
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCC-----CCeEEEEEcCCCCcEEEEEE--C--CCEEEEEcCCCeEEEEE
Confidence            35567888876  79999999999999999998     56778889999999999999  5  78999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      +..+       +.+..+..|...|.+++|++    .++++++.||.|++||+++...   ......+..|...+.     
T Consensus       200 ~~~~-------~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~-----  260 (435)
T 1p22_A          200 VNTG-------EMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVN-----  260 (435)
T ss_dssp             SSSC-------CEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEE-----
T ss_pred             CCCC-------cEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCC---ceeeeEecCCCCcEE-----
Confidence            9876       78888999999999999953    4799999999999999986321   122244556665555     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                           +++|  ++.     +|++|+.|     +.|++||+.+..    ....+.   +|...|.+++|++
T Consensus       261 -----~~~~--~~~-----~l~s~~~d-----g~i~vwd~~~~~----~~~~~~---~~~~~v~~~~~~~  306 (435)
T 1p22_A          261 -----VVDF--DDK-----YIVSASGD-----RTIKVWNTSTCE----FVRTLN---GHKRGIACLQYRD  306 (435)
T ss_dssp             -----EEEE--ETT-----EEEEEETT-----SEEEEEETTTCC----EEEEEE---CCSSCEEEEEEET
T ss_pred             -----EEEe--CCC-----EEEEEeCC-----CeEEEEECCcCc----EEEEEc---CCCCcEEEEEeCC
Confidence                 8888  333     89999999     999999998754    333334   5777999999965

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.91  E-value=1.5e-23  Score=164.86  Aligned_cols=170  Identities=19%  Similarity=0.210  Sum_probs=133.4

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEE--cCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVW--VPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~~l~s~~~d~   80 (240)
                      ..+..|.+.|.+++|+|++++|++++.||.|++||+.     +.+.+. +..|...|.+++|  +++  +.+|++++.|+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~-----~~~~~~-~~~~~~~v~~~~~~~~~~--~~~l~~~~~dg  151 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS-----SNQAIQ-IAQHDAPVKTIHWIKAPN--YSCVMTGSWDK  151 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETT-----TTEEEE-EEECSSCEEEEEEEECSS--CEEEEEEETTS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC-----CCCcee-eccccCceEEEEEEeCCC--CCEEEEccCCC
Confidence            3466799999999999999999999999999999998     334444 5679999999999  777  89999999999


Q ss_pred             eEEEEEeeeccCC------C-----------------------------------------c-----------c------
Q 026295           81 SLLLWEEIVEDAQ------P-----------------------------------------L-----------Q------   96 (240)
Q Consensus        81 ~v~iwd~~~~~~~------~-----------------------------------------~-----------~------   96 (240)
                      .|++||++.+...      .                                         .           .      
T Consensus       152 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (368)
T 3mmy_A          152 TLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGF  231 (368)
T ss_dssp             EEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred             cEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeE
Confidence            9999997653210      0                                         0           0      


Q ss_pred             -----------c--------EEEEEeeeccc------------cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc
Q 026295           97 -----------W--------KLCKSFESTST------------QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK  145 (240)
Q Consensus        97 -----------~--------~~~~~~~~~~~------------~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~  145 (240)
                                 |        .....+..|..            .|.+++|+|  ++.+|++++.||.|++||+.+     
T Consensus       232 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~s~~~dg~i~iwd~~~-----  304 (368)
T 3mmy_A          232 ALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHP--VHGTLATVGSDGRFSFWDKDA-----  304 (368)
T ss_dssp             EEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECT--TTCCEEEEETTSCEEEEETTT-----
T ss_pred             EEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEec--CCCEEEEEccCCeEEEEECCC-----
Confidence                       0        00112222333            699999999  999999999999999999987     


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                       .+++..+..|...+.          +++|+|++.     +|++|+.|     +..+.|++..
T Consensus       305 -~~~~~~~~~~~~~v~----------~~~~s~~g~-----~l~~~s~d-----~~~~~~~~~~  346 (368)
T 3mmy_A          305 -RTKLKTSEQLDQPIS----------ACCFNHNGN-----IFAYASSY-----DWSKGHEFYN  346 (368)
T ss_dssp             -TEEEEECCCCSSCEE----------EEEECTTSS-----CEEEEECC-----CSTTCGGGCC
T ss_pred             -CcEEEEecCCCCCce----------EEEECCCCC-----eEEEEecc-----cccccccccC
Confidence             577777777777776          999999998     89999988     6666555443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.91  E-value=1.9e-23  Score=163.10  Aligned_cols=204  Identities=15%  Similarity=0.084  Sum_probs=144.6

Q ss_pred             hhcc--cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCc----EEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295            4 AVAT--LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSS----FTCNLKTKVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         4 ~~~~--h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      .+..  |...|.+++|+| +++|++++.|+.|++||+.......    .+++..+. |...|.+++|+|+  +  +++++
T Consensus        94 ~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--~--l~~~~  167 (342)
T 1yfq_A           94 ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS--R--LIVGM  167 (342)
T ss_dssp             ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS--E--EEEEE
T ss_pred             eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC--c--EEEEe
Confidence            3556  999999999999 9999999999999999987200000    44555555 8899999999887  5  88999


Q ss_pred             cCCeEEEEEeee-ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc
Q 026295           78 SDGSLLLWEEIV-EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA  156 (240)
Q Consensus        78 ~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~  156 (240)
                      .|+.|++||++. ...     ........+...+.+++|+|. ++.++++++.||.|++|++.........+....+..+
T Consensus       168 ~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~i~~i~~~~~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~  241 (342)
T 1yfq_A          168 NNSQVQWFRLPLCEDD-----NGTIEESGLKYQIRDVALLPK-EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             STTEEEEEESSCCTTC-----CCEEEECSCSSCEEEEEECSG-GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             CCCeEEEEECCccccc-----cceeeecCCCCceeEEEECCC-CCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence            999999999976 321     222333456788999999751 4678999999999999999763111001333444444


Q ss_pred             cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC-CCceEEEEEe
Q 026295          157 IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR-SDEVYAVAWA  235 (240)
Q Consensus       157 ~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s  235 (240)
                      ..... ...+...+.+++|+|++.     +|++++.|     +.|++||+.+..    ....+.   +| ..+|++++  
T Consensus       242 ~~~~~-~~~~~~~i~~~~~s~~~~-----~l~~~~~d-----g~i~vwd~~~~~----~~~~~~---~~h~~~v~~~~--  301 (342)
T 1yfq_A          242 RLNLK-DTNLAYPVNSIEFSPRHK-----FLYTAGSD-----GIISCWNLQTRK----KIKNFA---KFNEDSVVKIA--  301 (342)
T ss_dssp             CCCTT-CCSSCCCEEEEEECTTTC-----CEEEEETT-----SCEEEEETTTTE----EEEECC---CCSSSEEEEEE--
T ss_pred             ccccc-ccccceeEEEEEEcCCCC-----EEEEecCC-----ceEEEEcCccHh----Hhhhhh---cccCCCceEec--
Confidence            33000 001112334999999987     89999998     999999987654    233333   45 77999999  


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      |++.
T Consensus       302 ~~~~  305 (342)
T 1yfq_A          302 CSDN  305 (342)
T ss_dssp             ECSS
T ss_pred             CCCC
Confidence            7763

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.90  E-value=8.3e-23  Score=164.99  Aligned_cols=192  Identities=14%  Similarity=0.169  Sum_probs=137.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCC------CC--CcEE---EEeEeeecCccEEEEEEcCCCCCCEEE----
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDP------SS--SSFT---CNLKTKVHAGAILKVVWVPPEFGDAVA----   74 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~------~~--~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~l~----   74 (240)
                      ..+..+++++++.++++++.++ ++||+....      ..  ....   .... ..+...|.+++|+|+  +++|+    
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spd--g~~lav~~~  112 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCD--NLTLSACMM  112 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTT--SCEEEEEEE
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCC--CCEEEEEEe
Confidence            3588899999999999999988 888875310      00  0000   0011 135678999999999  99999    


Q ss_pred             EEecCCeEEEEEeeeccC----CCcccEEEEEeeeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecCcccccceeE
Q 026295           75 CICSDGSLLLWEEIVEDA----QPLQWKLCKSFESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        75 s~~~d~~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~  149 (240)
                      +++.|+.|++||+.....    ....+..+..+.+|...|.+++|+|  + +.+|++++.||+|++||+++      ...
T Consensus       113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~las~s~Dg~v~iwD~~~------~~~  184 (434)
T 2oit_A          113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNP--TVPSMVAVCLADGSIAVLQVTE------TVK  184 (434)
T ss_dssp             ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECS--SCTTEEEEEETTSCEEEEEESS------SEE
T ss_pred             ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECC--CCCCEEEEEECCCeEEEEEcCC------Ccc
Confidence            788899999999875310    0011233556667899999999999  6 78899999999999999987      333


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC----CCC
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP----EDR  225 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~----~~h  225 (240)
                      ......|...+.          +++|+|++.     +|++|+.|     +.|++||.+ ...    ...+..+    .+|
T Consensus       185 ~~~~~~~~~~v~----------~v~wspdg~-----~lasgs~d-----g~v~iwd~~-~~~----~~~~~~~~~~~~~~  239 (434)
T 2oit_A          185 VCATLPSTVAVT----------SVCWSPKGK-----QLAVGKQN-----GTVVQYLPT-LQE----KKVIPCPPFYESDH  239 (434)
T ss_dssp             EEEEECGGGCEE----------EEEECTTSS-----CEEEEETT-----SCEEEECTT-CCE----EEEECCCTTCCTTS
T ss_pred             eeeccCCCCcee----------EEEEcCCCC-----EEEEEcCC-----CcEEEEccC-Ccc----cccccCCcccCCCC
Confidence            333344555555          999999987     89999998     999999987 221    1222222    124


Q ss_pred             CCceEEEEEecCC
Q 026295          226 SDEVYAVAWALNI  238 (240)
Q Consensus       226 ~~~v~~v~~sp~~  238 (240)
                      ...|.+++|+|+.
T Consensus       240 ~~~v~~v~w~~~~  252 (434)
T 2oit_A          240 PVRVLDVLWIGTY  252 (434)
T ss_dssp             CEEEEEEEEEETT
T ss_pred             ceeEEEEEEecCc
Confidence            4589999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.89  E-value=1.2e-21  Score=157.77  Aligned_cols=184  Identities=9%  Similarity=0.057  Sum_probs=143.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~   83 (240)
                      +..|.+.|.+++|+++++++++++.|+.|++||+.     +.+.+..+..|...+.+++|+|+  +..++ +++.|+.|+
T Consensus       165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~i~  237 (433)
T 3bws_A          165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLK-----TLAYKATVDLTGKWSKILLYDPI--RDLVYCSNWISEDIS  237 (433)
T ss_dssp             HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETT-----TCCEEEEEECSSSSEEEEEEETT--TTEEEEEETTTTEEE
T ss_pred             ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECC-----CceEEEEEcCCCCCeeEEEEcCC--CCEEEEEecCCCcEE
Confidence            45788899999999999999999999999999998     55677778888899999999999  88775 455799999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe--------CCCcEEEEEecCcccccceeEEeeeec
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY--------SDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--------~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      +||+..+       +.+..+..+ ..+.+++|+|  ++.++++++        .|+.|++||+++      .+....+ .
T Consensus       238 ~~d~~~~-------~~~~~~~~~-~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~------~~~~~~~-~  300 (433)
T 3bws_A          238 VIDRKTK-------LEIRKTDKI-GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDK------EKLIDTI-G  300 (433)
T ss_dssp             EEETTTT-------EEEEECCCC-SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTT------TEEEEEE-E
T ss_pred             EEECCCC-------cEEEEecCC-CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCC------CcEEeec-c
Confidence            9999765       666666654 5589999999  998888887        588999999986      3443333 2


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      +...+.          .++|+|++.    .++++++.+     +.|++||+.+..    ....+.    +...+.+++|+
T Consensus       301 ~~~~~~----------~~~~~~~g~----~l~~~~~~~-----~~v~v~d~~~~~----~~~~~~----~~~~~~~~~~s  353 (433)
T 3bws_A          301 PPGNKR----------HIVSGNTEN----KIYVSDMCC-----SKIEVYDLKEKK----VQKSIP----VFDKPNTIALS  353 (433)
T ss_dssp             EEECEE----------EEEECSSTT----EEEEEETTT-----TEEEEEETTTTE----EEEEEE----CSSSEEEEEEC
T ss_pred             CCCCcc----------eEEECCCCC----EEEEEecCC-----CEEEEEECCCCc----EEEEec----CCCCCCeEEEc
Confidence            222333          789999985    145565666     999999987643    223332    45589999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      |++.
T Consensus       354 ~dg~  357 (433)
T 3bws_A          354 PDGK  357 (433)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            9974

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.89  E-value=7.2e-22  Score=159.51  Aligned_cols=177  Identities=12%  Similarity=0.080  Sum_probs=126.4

Q ss_pred             cccceEEEEECCCCCEEE----EEeCCCcEEEEeCCCC-----CC-CcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLA----TGSTDGTLSIFDSPDP-----SS-SSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~----~~~~d~~i~iw~~~~~-----~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      |...|.+++|+|+|++|+    +|+.|+.|+|||+...     .. .....+..+.+|...|.+++|+|+ .+.+|++++
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-~~~~las~s  169 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-VPSMVAVCL  169 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-CTTEEEEEE
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-CCCEEEEEE
Confidence            456799999999999999    7889999999998521     00 012235566789999999999996 268899999


Q ss_pred             cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           78 SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        78 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .|++|++||++.+       ........|...|.+++|+|  +|.+|++++.||+|++||++.       +....+..+.
T Consensus       170 ~Dg~v~iwD~~~~-------~~~~~~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~~-------~~~~~~~~~~  233 (434)
T 2oit_A          170 ADGSIAVLQVTET-------VKVCATLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPTL-------QEKKVIPCPP  233 (434)
T ss_dssp             TTSCEEEEEESSS-------EEEEEEECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTTC-------CEEEEECCCT
T ss_pred             CCCeEEEEEcCCC-------cceeeccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccCC-------cccccccCCc
Confidence            9999999999875       55556667888999999999  999999999999999999872       2222222221


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCC--CCeEEEEEeecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ--LNSSKVWEFDEA  209 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~--~~~i~iw~~~~~  209 (240)
                      ..   ...+...+.+++|+++..     ++++....|+..  ...+++|++...
T Consensus       234 ~~---~~~~~~~v~~v~w~~~~~-----~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          234 FY---ESDHPVRVLDVLWIGTYV-----FAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TC---CTTSCEEEEEEEEEETTE-----EEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             cc---CCCCceeEEEEEEecCce-----EEEEEccCCCccCCCCceEEEEeccC
Confidence            10   001112344899999774     454433322100  024899999765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.89  E-value=1.2e-21  Score=154.28  Aligned_cols=166  Identities=16%  Similarity=0.192  Sum_probs=117.9

Q ss_pred             CEEEE--EeCCCcEEEEeCCCCCC----------CcEEE-EeEeeecCccEEEEEEcCCCCCCEEEEEecCCe-EEEEEe
Q 026295           22 QRLAT--GSTDGTLSIFDSPDPSS----------SSFTC-NLKTKVHAGAILKVVWVPPEFGDAVACICSDGS-LLLWEE   87 (240)
Q Consensus        22 ~~l~~--~~~d~~i~iw~~~~~~~----------~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~-v~iwd~   87 (240)
                      .+++.  |+.||.|++||+.....          ....+ +..+.+|.+.|.+++|+|+  +.+|++++.|++ |++||+
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~--g~~l~s~s~d~~~v~iwd~  225 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK--SDMVATCSQDGTIIRVFKT  225 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT--SSEEEEEETTCSEEEEEET
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC--CCEEEEEeCCCCEEEEEEC
Confidence            45555  57889999999873210          00012 6778899999999999999  999999999998 999999


Q ss_pred             eeccCCCcccEEEEEee-e-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccc------
Q 026295           88 IVEDAQPLQWKLCKSFE-S-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAID------  158 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~------  158 (240)
                      +.+       +++..+. + |...|.+++|+|  ++.+|++++.|++|++||++.+.......+...+ .....      
T Consensus       226 ~~~-------~~~~~~~~g~h~~~v~~~~~s~--~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (355)
T 3vu4_A          226 EDG-------VLVREFRRGLDRADVVDMKWST--DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLC  296 (355)
T ss_dssp             TTC-------CEEEEEECTTCCSCEEEEEECT--TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSE
T ss_pred             CCC-------cEEEEEEcCCCCCcEEEEEECC--CCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccccee
Confidence            876       7888888 4 889999999999  9999999999999999999764221111000000 00000      


Q ss_pred             --eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          159 --SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       159 --~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                        .+...  .......++|+|++.     +|++++.|     |.+++|++....
T Consensus       297 ~~~~~~~--~~~~~~~~a~~~d~~-----~l~~~~~d-----g~~~~~~~~~~~  338 (355)
T 3vu4_A          297 NFKLSVD--KHVRGCKIAWISESS-----LVVVWPHT-----RMIETFKVVFDD  338 (355)
T ss_dssp             EEECCCC--TTCCCCEEEESSSSE-----EEEEETTT-----TEEEEEEEEEET
T ss_pred             EEEeccC--CCCCceEEEEeCCCC-----EEEEEeCC-----CeEEEEEEEcCC
Confidence              00000  000113689999987     89999888     999999997654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.89  E-value=6.5e-21  Score=151.54  Aligned_cols=178  Identities=13%  Similarity=0.122  Sum_probs=135.8

Q ss_pred             ccceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE-EecCCeEEEEE
Q 026295            9 DKGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC-ICSDGSLLLWE   86 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~~v~iwd   86 (240)
                      ...+.+++|+|++++| ++++.|+.|++||+.     +.+.+..+..+. .+.+++|+|+  +++++. +..++.|++||
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~-----~~~~~~~~~~~~-~v~~~~~spd--g~~l~~~~~~~~~v~v~d  102 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-----TNNVIATVPAGS-SPQGVAVSPD--GKQVYVTNMASSTLSVID  102 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETT-----TTEEEEEEECSS-SEEEEEECTT--SSEEEEEETTTTEEEEEE
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECC-----CCeEEEEEECCC-CccceEECCC--CCEEEEEECCCCEEEEEE
Confidence            3468999999999976 677789999999998     556777776554 8999999999  887754 44679999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      +..+       +.+..+..+ ..+.+++|+|  ++.++ ++++.++.|++||+.+      .+....+..+.. +.    
T Consensus       103 ~~~~-------~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~-~~----  161 (391)
T 1l0q_A          103 TTSN-------TVAGTVKTG-KSPLGLALSP--DGKKLYVTNNGDKTVSVINTVT------KAVINTVSVGRS-PK----  161 (391)
T ss_dssp             TTTT-------EEEEEEECS-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTT------TEEEEEEECCSS-EE----
T ss_pred             CCCC-------eEEEEEeCC-CCcceEEECC--CCCEEEEEeCCCCEEEEEECCC------CcEEEEEecCCC-cc----
Confidence            9876       666666644 5789999999  88876 6778899999999987      455555544322 23    


Q ss_pred             ccceeeeEEEeCCCCCCCCceE-EEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSF-VLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l-~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                            .++|+|++.     .| ++++.+     +.|++||+.+..    ....+.    +...+.+++|+|++.
T Consensus       162 ------~~~~~~dg~-----~l~~~~~~~-----~~v~~~d~~~~~----~~~~~~----~~~~~~~~~~~~~g~  212 (391)
T 1l0q_A          162 ------GIAVTPDGT-----KVYVANFDS-----MSISVIDTVTNS----VIDTVK----VEAAPSGIAVNPEGT  212 (391)
T ss_dssp             ------EEEECTTSS-----EEEEEETTT-----TEEEEEETTTTE----EEEEEE----CSSEEEEEEECTTSS
T ss_pred             ------eEEECCCCC-----EEEEEeCCC-----CEEEEEECCCCe----EEEEEe----cCCCccceEECCCCC
Confidence                  899999986     55 555666     999999987653    222332    445899999999974

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=1.5e-21  Score=157.18  Aligned_cols=179  Identities=6%  Similarity=-0.048  Sum_probs=139.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe-----EeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNL-----KTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ..+.+++|+|++.++++++.++.|++||+.     +++...     .+.+|.+.|.+++|+++  +.++++++.|+.|++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~-----~g~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s~~~d~~v~~  195 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDIN-----SGQTVRLSPPEKYKKKLGFVETISIPEH--NELWVSQMQANAVHV  195 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETT-----TCCEEEECCCHHHHTTCCEEEEEEEGGG--TEEEEEEGGGTEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECC-----CCeEeeecCcccccccCCceeEEEEcCC--CEEEEEECCCCEEEE
Confidence            456789999977888888889999999998     334444     34478889999999988  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEE-EeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVA-AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ||+..+       +.+..+..+...+.+++|+|  ++.++++ ++.|+.|++||+++      .+....+..+. .+.  
T Consensus       196 ~d~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~------~~~~~~~~~~~-~~~--  257 (433)
T 3bws_A          196 FDLKTL-------AYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKT------KLEIRKTDKIG-LPR--  257 (433)
T ss_dssp             EETTTC-------CEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTT------TEEEEECCCCS-EEE--
T ss_pred             EECCCc-------eEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCC------CcEEEEecCCC-Cce--
Confidence            999765       67777878888999999999  8887754 44799999999986      45444443322 233  


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEec--------CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFN--------SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~--------dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                              .++|+|++.     +|++++.        |     +.|++||+.++..    ...+    .|...+.+++|+
T Consensus       258 --------~~~~~~~g~-----~l~~~~~~~~~~~~~d-----g~i~~~d~~~~~~----~~~~----~~~~~~~~~~~~  311 (433)
T 3bws_A          258 --------GLLLSKDGK-----ELYIAQFSASNQESGG-----GRLGIYSMDKEKL----IDTI----GPPGNKRHIVSG  311 (433)
T ss_dssp             --------EEEECTTSS-----EEEEEEEESCTTCSCC-----EEEEEEETTTTEE----EEEE----EEEECEEEEEEC
T ss_pred             --------EEEEcCCCC-----EEEEEECCCCccccCC-----CeEEEEECCCCcE----Eeec----cCCCCcceEEEC
Confidence                    899999987     7777773        5     8999999976532    2222    244478999999


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      |++.
T Consensus       312 ~~g~  315 (433)
T 3bws_A          312 NTEN  315 (433)
T ss_dssp             SSTT
T ss_pred             CCCC
Confidence            9874

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=2.8e-20  Score=149.51  Aligned_cols=185  Identities=12%  Similarity=0.044  Sum_probs=134.5

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDG---TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSD   79 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d   79 (240)
                      .+..|.+.|.+++|+|+|++|++++.++   .|++||+..     .+.. .+..|...+.+++|+|+  |+.|+ +++.+
T Consensus       173 ~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-----g~~~-~l~~~~~~~~~~~~spd--g~~la~~~~~~  244 (415)
T 2hqs_A          173 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-----GAVR-QVASFPRHNGAPAFSPD--GSKLAFALSKT  244 (415)
T ss_dssp             EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----CCEE-EEECCSSCEEEEEECTT--SSEEEEEECTT
T ss_pred             EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-----CcEE-EeecCCCcccCEEEcCC--CCEEEEEEecC
Confidence            4567888999999999999999999885   999999983     3333 45667889999999999  99777 66666


Q ss_pred             Ce--EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CC--cEEEEEecCcccccceeEEeeee
Q 026295           80 GS--LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DG--HVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        80 ~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      +.  |.+||+..+       + ...+..+...+..++|+|  +|.+|++++. ++  .|.+||+.+      .+. ..+.
T Consensus       245 g~~~i~~~d~~~~-------~-~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~------~~~-~~l~  307 (415)
T 2hqs_A          245 GSLNLYVMDLASG-------Q-IRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNING------GAP-QRIT  307 (415)
T ss_dssp             SSCEEEEEETTTC-------C-EEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTS------SCC-EECC
T ss_pred             CCceEEEEECCCC-------C-EEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCC------CCE-EEEe
Confidence            54  888998654       3 355666778899999999  9998888876 45  566667765      221 2222


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      .+...+.          .++|+|++.     +|++++.+++.  ..|++||+.++..     ..+.   .|. .+.+++|
T Consensus       308 ~~~~~~~----------~~~~spdG~-----~l~~~~~~~g~--~~i~~~d~~~~~~-----~~l~---~~~-~~~~~~~  361 (415)
T 2hqs_A          308 WEGSQNQ----------DADVSSDGK-----FMVMVSSNGGQ--QHIAKQDLATGGV-----QVLS---STF-LDETPSL  361 (415)
T ss_dssp             CSSSEEE----------EEEECTTSS-----EEEEEEECSSC--EEEEEEETTTCCE-----EECC---CSS-SCEEEEE
T ss_pred             cCCCccc----------CeEECCCCC-----EEEEEECcCCc--eEEEEEECCCCCE-----EEec---CCC-CcCCeEE
Confidence            2333333          789999997     78887764200  4899999876542     1222   233 8999999


Q ss_pred             ecCCC
Q 026295          235 ALNIG  239 (240)
Q Consensus       235 sp~~~  239 (240)
                      +||+.
T Consensus       362 spdg~  366 (415)
T 2hqs_A          362 APNGT  366 (415)
T ss_dssp             CTTSS
T ss_pred             cCCCC
Confidence            99974

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.86  E-value=2.3e-19  Score=142.64  Aligned_cols=178  Identities=12%  Similarity=0.117  Sum_probs=134.5

Q ss_pred             ccceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-EEEecCCeEEEEE
Q 026295            9 DKGTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-ACICSDGSLLLWE   86 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~iwd   86 (240)
                      ...+.+++|+|++++|+.+ +.++.|++||+.     +.+.+..+..+ ..+.+++|+|+  ++.+ ++++.|+.|++||
T Consensus        73 ~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~-----~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~~~~~~~v~~~d  144 (391)
T 1l0q_A           73 GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT-----SNTVAGTVKTG-KSPLGLALSPD--GKKLYVTNNGDKTVSVIN  144 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTTTEEEEEETT-----TTEEEEEEECS-SSEEEEEECTT--SSEEEEEETTTTEEEEEE
T ss_pred             CCCccceEECCCCCEEEEEECCCCEEEEEECC-----CCeEEEEEeCC-CCcceEEECCC--CCEEEEEeCCCCEEEEEE
Confidence            3489999999999987554 467999999998     45666666654 56899999999  8876 6778899999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      +..+       +.+..+..+ ..+..++|+|  ++.++ ++++.++.|++||+++      .+....+.. ...+.    
T Consensus       145 ~~~~-------~~~~~~~~~-~~~~~~~~~~--dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~-~~~~~----  203 (391)
T 1l0q_A          145 TVTK-------AVINTVSVG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVT------NSVIDTVKV-EAAPS----  203 (391)
T ss_dssp             TTTT-------EEEEEEECC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTT------TEEEEEEEC-SSEEE----
T ss_pred             CCCC-------cEEEEEecC-CCcceEEECC--CCCEEEEEeCCCCEEEEEECCC------CeEEEEEec-CCCcc----
Confidence            9766       666666654 5668999999  88876 5777889999999987      344444432 22333    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEe---cCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGF---NSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~---~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                            +++|+|++.     +|++++   .+     +.|++||+.+..    ....+..   | ..+.+++|+||+.
T Consensus       204 ------~~~~~~~g~-----~l~~~~~~~~~-----~~v~~~d~~~~~----~~~~~~~---~-~~~~~~~~s~dg~  256 (391)
T 1l0q_A          204 ------GIAVNPEGT-----KAYVTNVDKYF-----NTVSMIDTGTNK----ITARIPV---G-PDPAGIAVTPDGK  256 (391)
T ss_dssp             ------EEEECTTSS-----EEEEEEECSSC-----CEEEEEETTTTE----EEEEEEC---C-SSEEEEEECTTSS
T ss_pred             ------ceEECCCCC-----EEEEEecCcCC-----CcEEEEECCCCe----EEEEEec---C-CCccEEEEccCCC
Confidence                  899999987     777777   45     999999987653    2333332   2 2589999999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.84  E-value=1.7e-19  Score=144.90  Aligned_cols=180  Identities=15%  Similarity=0.144  Sum_probs=129.8

Q ss_pred             hcccccceEEEEECCCCCEEE-EEeCCCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC
Q 026295            5 VATLDKGTTSSSWNYCGQRLA-TGSTDGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~-~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~   80 (240)
                      +..|.+.+.+++|+|+|++|+ +++.++.  |++||+..     .+. ..+..|...+.+++|+|+  |+.|+.++. ++
T Consensus       218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-----~~~-~~l~~~~~~~~~~~~spd--g~~l~~~s~~~g  289 (415)
T 2hqs_A          218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-----GQI-RQVTDGRSNNTEPTWFPD--SQNLAFTSDQAG  289 (415)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-----CCE-EECCCCSSCEEEEEECTT--SSEEEEEECTTS
T ss_pred             eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-----CCE-EeCcCCCCcccceEECCC--CCEEEEEECCCC
Confidence            556778899999999999888 6666655  88999873     333 456678889999999999  998888775 45


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC---CcEEEEEecCcccccceeEEeeeec
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD---GHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d---g~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                        .|.+||+..+       + ...+..+...+..++|+|  +|++|++++.+   ..|.+||+.+      .+. ..+..
T Consensus       290 ~~~i~~~d~~~~-------~-~~~l~~~~~~~~~~~~sp--dG~~l~~~~~~~g~~~i~~~d~~~------~~~-~~l~~  352 (415)
T 2hqs_A          290 RPQVYKVNINGG-------A-PQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLAT------GGV-QVLSS  352 (415)
T ss_dssp             SCEEEEEETTSS-------C-CEECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTT------CCE-EECCC
T ss_pred             CcEEEEEECCCC-------C-EEEEecCCCcccCeEECC--CCCEEEEEECcCCceEEEEEECCC------CCE-EEecC
Confidence              5666676543       2 233444556788999999  99999888764   5899999986      232 22333


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC--eEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN--SSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                      +. .+.          +++|+|++.     +|++++.++    +  .|++||+....     ...+.   +|.+.|++++
T Consensus       353 ~~-~~~----------~~~~spdg~-----~l~~~s~~~----~~~~l~~~d~~g~~-----~~~l~---~~~~~v~~~~  404 (415)
T 2hqs_A          353 TF-LDE----------TPSLAPNGT-----MVIYSSSQG----MGSVLNLVSTDGRF-----KARLP---ATDGQVKFPA  404 (415)
T ss_dssp             SS-SCE----------EEEECTTSS-----EEEEEEEET----TEEEEEEEETTSCC-----EEECC---CSSSEEEEEE
T ss_pred             CC-CcC----------CeEEcCCCC-----EEEEEEcCC----CccEEEEEECCCCc-----EEEee---CCCCCCcCCc
Confidence            22 333          899999987     788888772    3  78888875432     23333   4666999999


Q ss_pred             EecC
Q 026295          234 WALN  237 (240)
Q Consensus       234 ~sp~  237 (240)
                      |+|-
T Consensus       405 ~~~~  408 (415)
T 2hqs_A          405 WSPY  408 (415)
T ss_dssp             ECCC
T ss_pred             cccc
Confidence            9994

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.83  E-value=8e-18  Score=131.01  Aligned_cols=200  Identities=11%  Similarity=0.043  Sum_probs=132.6

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~i   84 (240)
                      .|...+.+++|+|+|++|++++.+ +.|++|++.... +..+.+..+..+. .+..++|+|+  ++++++++. ++.|.+
T Consensus        35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~s~d--g~~l~~~~~~~~~i~~  110 (343)
T 1ri6_A           35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-GALTFAAESALPG-SLTHISTDHQ--GQFVFVGSYNAGNVSV  110 (343)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-CCEEEEEEEECSS-CCSEEEECTT--SSEEEEEETTTTEEEE
T ss_pred             ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC-CceeeccccccCC-CCcEEEEcCC--CCEEEEEecCCCeEEE
Confidence            456678899999999999998887 999999997221 1445555665544 7889999999  987766654 889999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEe--eeecccceee
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQA--EFQNAIDSVT  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~--~~~~~~~~v~  161 (240)
                      ||+..+    ........+... ..+..++|+|  ++.++++++ .++.|.+||+.+...   .....  .+.....   
T Consensus       111 ~d~~~~----~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~~~~~~---  177 (343)
T 1ri6_A          111 TRLEDG----LPVGVVDVVEGL-DGCHSANISP--DNRTLWVPALKQDRICLFTVSDDGH---LVAQDPAEVTTVEG---  177 (343)
T ss_dssp             EEEETT----EEEEEEEEECCC-TTBCCCEECT--TSSEEEEEEGGGTEEEEEEECTTSC---EEEEEEEEEECSTT---
T ss_pred             EECCCC----ccccccccccCC-CCceEEEECC--CCCEEEEecCCCCEEEEEEecCCCc---eeeecccccccCCC---
Confidence            999421    011444444433 4688999999  998888777 889999999975211   11111  1111111   


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEe-cCCCCCCCeEEEEEeecCCCCcceeEeeecC-CC--CCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPVAELALP-ED--RSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~-~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~-~~--h~~~v~~v~~sp~  237 (240)
                            ..+..++|+|++.     +|++++ .+     +.|++|++............+... .+  ....+.+++|+||
T Consensus       178 ------~~~~~~~~~pdg~-----~l~~~~~~~-----~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d  241 (343)
T 1ri6_A          178 ------AGPRHMVFHPNEQ-----YAYCVNELN-----SSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD  241 (343)
T ss_dssp             ------CCEEEEEECTTSS-----EEEEEETTT-----TEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred             ------CCcceEEECCCCC-----EEEEEeCCC-----CEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence                  1223799999986     565555 55     999999996533333222222211 11  1346778999999


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       242 g~  243 (343)
T 1ri6_A          242 GR  243 (343)
T ss_dssp             SS
T ss_pred             CC
Confidence            74

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=4.7e-19  Score=134.89  Aligned_cols=188  Identities=9%  Similarity=0.016  Sum_probs=131.2

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEe--cCCe
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACIC--SDGS   81 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~--~d~~   81 (240)
                      +..|...|.+++|+|+|++|++++ ++.|++||+...    .+.......+ ...+.+++|+|+  +++|++++  .++.
T Consensus        37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~  109 (297)
T 2ojh_A           37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGD----PSPEKVDTGFATICNNDHGISPD--GALYAISDKVEFGK  109 (297)
T ss_dssp             EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSC----CSCEECCCTTCCCBCSCCEECTT--SSEEEEEECTTTSS
T ss_pred             eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCC----CCceEeccccccccccceEECCC--CCEEEEEEeCCCCc
Confidence            556888999999999999999987 689999999841    2333334444 367889999999  99999988  4456


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      ..||.+....      .....+..+ ..+..++|+|  ++.+|+ +++.++.+++|++....    .+ ...+..+...+
T Consensus       110 ~~l~~~~~~~------~~~~~~~~~-~~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~~~~~----~~-~~~~~~~~~~~  175 (297)
T 2ojh_A          110 SAIYLLPSTG------GTPRLMTKN-LPSYWHGWSP--DGKSFTYCGIRDQVFDIYSMDIDS----GV-ETRLTHGEGRN  175 (297)
T ss_dssp             CEEEEEETTC------CCCEECCSS-SSEEEEEECT--TSSEEEEEEEETTEEEEEEEETTT----CC-EEECCCSSSCE
T ss_pred             ceEEEEECCC------CceEEeecC-CCccceEECC--CCCEEEEEECCCCceEEEEEECCC----Cc-ceEcccCCCcc
Confidence            7777765332      123333333 3488899999  998776 77889999999975321    11 22333333333


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .          +++|+|++.     +|++++. +     +.++||++......   ...+.   .|...+..++|+||+.
T Consensus       176 ~----------~~~~s~dg~-----~l~~~~~~~-----~~~~i~~~~~~~~~---~~~~~---~~~~~~~~~~~s~dg~  229 (297)
T 2ojh_A          176 D----------GPDYSPDGR-----WIYFNSSRT-----GQMQIWRVRVDGSS---VERIT---DSAYGDWFPHPSPSGD  229 (297)
T ss_dssp             E----------EEEECTTSS-----EEEEEECTT-----SSCEEEEEETTSSC---EEECC---CCSEEEEEEEECTTSS
T ss_pred             c----------cceECCCCC-----EEEEEecCC-----CCccEEEECCCCCC---cEEEe---cCCcccCCeEECCCCC
Confidence            3          899999987     6776664 5     99999999743322   22222   3556899999999974

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.79  E-value=4.7e-18  Score=145.72  Aligned_cols=198  Identities=13%  Similarity=0.105  Sum_probs=130.4

Q ss_pred             ccceEEEEECCCCCEEEEEeC-CC-----cEEEEeCCCCCCCcEEEEeEeeecC------------------------cc
Q 026295            9 DKGTTSSSWNYCGQRLATGST-DG-----TLSIFDSPDPSSSSFTCNLKTKVHA------------------------GA   58 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~~h~------------------------~~   58 (240)
                      ...+.+++|+|||++|++++. |+     .|++||+..     ++....+..+.                        ..
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-----GQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTG  110 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-----CCEEEEECGGGTC--------------------CCEE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-----CceeEccchhhcccccccccchhhhhhhhhhhccccC
Confidence            346899999999999999998 88     899999983     33333443332                        23


Q ss_pred             EEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEe
Q 026295           59 ILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYEL  138 (240)
Q Consensus        59 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~  138 (240)
                      +..++|+|+  |++|++++. +.|.+||+..+..     .....+..+...+..++|+|  +|++|++++ ++.|.+||+
T Consensus       111 v~~~~~SpD--g~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~  179 (741)
T 2ecf_A          111 IVDYQWSPD--AQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDL  179 (741)
T ss_dssp             SCCCEECTT--SSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEET
T ss_pred             cceeEECCC--CCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEec
Confidence            789999999  999998876 8999999976410     03334555667899999999  999998887 468999998


Q ss_pred             cCcccccceeEEeeeecccceeecc------ccccceeeeEEEeCCCCCCCCceEEEEecCCCC----------------
Q 026295          139 LDPLILKNWQLQAEFQNAIDSVTMF------RKASCISASISWNPQKGENQGSSFVLGFNSDTP----------------  196 (240)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~v~~~------~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~----------------  196 (240)
                      .+      .+.......+...+...      ......+..++|+|++.     .|++++.|...                
T Consensus       180 ~~------g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-----~l~~~~~d~~~~~~~~~~~~~p~~~~~  248 (741)
T 2ecf_A          180 AS------GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-----AIAYARIDESPVPVQKRYEVYADRTDV  248 (741)
T ss_dssp             TT------TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-----CEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred             CC------CCEEEeccCCccceeccccceeeeeccccccceEECCCCC-----EEEEEEEcCCCCceEecCCCCCCcccc
Confidence            76      23222211111111000      00000123799999998     78888765100                


Q ss_pred             ------------CCCeEEEEEeec-CCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          197 ------------QLNSSKVWEFDE-AHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       197 ------------~~~~i~iw~~~~-~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                  ....|++||+.+ +...     .+.....|...+..++| ||+.
T Consensus       249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~-pDg~  298 (741)
T 2ecf_A          249 IEQRYPAAGDANVQVKLGVISPAEQAQTQ-----WIDLGKEQDIYLARVNW-RDPQ  298 (741)
T ss_dssp             EEEECCBTTSCCCEEEEEEECSSTTCCCE-----EECCCSCSSEEEEEEEE-EETT
T ss_pred             eEeecCCCCCCCCeeEEEEEECCCCCceE-----EecCCCCcceEEEEEEe-CCCC
Confidence                        000778888766 5422     11111246678999999 9974

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=3.9e-16  Score=122.15  Aligned_cols=203  Identities=7%  Similarity=-0.017  Sum_probs=130.0

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeee---------cCccEEEEEEcCCCCCCEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKV---------HAGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      .+...+..++|+|+|++|++++ .++.|++|++...+  ....+..+..         +...+.+++|+|+  |+++++.
T Consensus        83 ~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd--g~l~v~~  158 (347)
T 3hfq_A           83 APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADG--ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD--NRLAVID  158 (347)
T ss_dssp             EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTS--CEEEEEEEECCCCCSSTTCSSCCEEEEEECTT--SCEEEEE
T ss_pred             cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCC--CeeecceeecCCCCCCccccCCCceEEEECCC--CcEEEEe
Confidence            3566788999999999988888 67899999996432  3344444432         1224889999999  8866666


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEE-EeCCCcEEEEEecCcccccceeEEeeee
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVA-AYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      ..++.|.+|++...    ........+.. ....+..++|+|  +|+++++ ...++.|.+|++....  ........+.
T Consensus       159 ~~~~~v~~~~~~~~----g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~--g~~~~~~~~~  230 (347)
T 3hfq_A          159 LGSDKVYVYNVSDA----GQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQT--GAFTQLGIVK  230 (347)
T ss_dssp             TTTTEEEEEEECTT----SCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTT--TEEEEEEEEE
T ss_pred             CCCCEEEEEEECCC----CcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCC--CceEEeeeee
Confidence            67889999999721    11122333322 233677899999  9986655 5578899999987411  1122232322


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                      .......    ....+..++|+|++.     +|+++ ..+     +.|.+|++.... .......+.   .+...+..++
T Consensus       231 ~~~~~~~----~~~~~~~i~~spdG~-----~l~v~~~~~-----~~v~v~~~~~~g-~~~~~~~~~---~~~~~~~~~~  292 (347)
T 3hfq_A          231 TIPADYT----AHNGAAAIRLSHDGH-----FLYVSNRGY-----NTLAVFAVTADG-HLTLIQQIS---TEGDFPRDFD  292 (347)
T ss_dssp             SSCTTCC----SCCEEEEEEECTTSC-----EEEEEEETT-----TEEEEEEECGGG-CEEEEEEEE---CSSSCCCEEE
T ss_pred             ecCCCCC----CCCcceeEEECCCCC-----EEEEEeCCC-----CEEEEEEECCCC-cEEEeEEEe---cCCCCcCeEE
Confidence            2211000    011234799999997     56444 445     999999997432 223334443   2445789999


Q ss_pred             EecCCC
Q 026295          234 WALNIG  239 (240)
Q Consensus       234 ~sp~~~  239 (240)
                      |+||+.
T Consensus       293 ~spdg~  298 (347)
T 3hfq_A          293 LDPTEA  298 (347)
T ss_dssp             ECTTSS
T ss_pred             ECCCCC
Confidence            999984

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.78  E-value=1.7e-16  Score=124.27  Aligned_cols=199  Identities=9%  Similarity=0.029  Sum_probs=130.2

Q ss_pred             cccceEEEEECCCCCEEEEEeC---CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGST---DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLL   83 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~   83 (240)
                      +......++|+|+|+ |++++.   ++.|++|++...   ..+.+..+..+...+..++|+|+  |++|++++ .++.|.
T Consensus        38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~p~~~a~spd--g~~l~~~~~~~~~v~  111 (347)
T 3hfq_A           38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ---TAHKLNTVVAPGTPPAYVAVDEA--RQLVYSANYHKGTAE  111 (347)
T ss_dssp             ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT---EEEEEEEEEEESCCCSEEEEETT--TTEEEEEETTTTEEE
T ss_pred             ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC---cEEEeeeeecCCCCCEEEEECCC--CCEEEEEeCCCCEEE
Confidence            445677899999999 555544   689999999632   44566666667788999999999  99888877 678999


Q ss_pred             EEEeeeccCCCcccEEEEEeeec---------cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFEST---------STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      +|++....    ....+..+...         ...+..++|+|  +|+++++...++.|.+|++....   .......+.
T Consensus       112 v~~~~~~g----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~~~~g---~~~~~~~~~  182 (347)
T 3hfq_A          112 VMKIAADG----ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNVSDAG---QLSEQSVLT  182 (347)
T ss_dssp             EEEECTTS----CEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEECTTS---CEEEEEEEE
T ss_pred             EEEeCCCC----CeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEECCCC---cEEEeeeEE
Confidence            99996321    11333333321         12478899999  88866666678899999998321   112222222


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCC---CCCceEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPED---RSDEVYA  231 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~---h~~~v~~  231 (240)
                      ....         .....++|+|++.     +|++++..+    +.|++|+++...........+.....   ....+..
T Consensus       183 ~~~g---------~~p~~~~~spdg~-----~l~v~~~~~----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  244 (347)
T 3hfq_A          183 MEAG---------FGPRHLVFSPDGQ-----YAFLAGELS----SQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA  244 (347)
T ss_dssp             CCTT---------CCEEEEEECTTSS-----EEEEEETTT----TEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred             cCCC---------CCCceEEECCCCC-----EEEEEeCCC----CEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence            2111         1123799999986     566655443    89999999864333333333332211   1135899


Q ss_pred             EEEecCCC
Q 026295          232 VAWALNIG  239 (240)
Q Consensus       232 v~~sp~~~  239 (240)
                      ++|+||+.
T Consensus       245 i~~spdG~  252 (347)
T 3hfq_A          245 IRLSHDGH  252 (347)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCC
Confidence            99999984

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=1e-17  Score=127.48  Aligned_cols=190  Identities=9%  Similarity=0.050  Sum_probs=128.6

Q ss_pred             cceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEE
Q 026295           10 KGTTSSSWNYCGQRLATGS--TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWE   86 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd   86 (240)
                      ..+.+++|+|++++|++++  .++.++||.+...   ... ...+..+ ..+..++|+|+  ++.++ ++..++.+++|+
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~---~~~-~~~~~~~-~~~~~~~~spd--g~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPST---GGT-PRLMTKN-LPSYWHGWSPD--GKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT---CCC-CEECCSS-SSEEEEEECTT--SSEEEEEEEETTEEEEEE
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECC---CCc-eEEeecC-CCccceEECCC--CCEEEEEECCCCceEEEE
Confidence            5788999999999999999  4456666665422   111 2233333 35889999999  88776 777899999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      +....      .....+..+...+..++|+|  ++.+|++++ .++.+++|++...     ......+..+...+.    
T Consensus       158 ~~~~~------~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~----  220 (297)
T 2ojh_A          158 MDIDS------GVETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVD-----GSSVERITDSAYGDW----  220 (297)
T ss_dssp             EETTT------CCEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETT-----SSCEEECCCCSEEEE----
T ss_pred             EECCC------CcceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCC-----CCCcEEEecCCcccC----
Confidence            86432      23345556677899999999  998877666 5899999998632     222334444433343    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCC------CCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTP------QLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~------~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                            .++|+|++.     +|++++.++..      ..+.|++||+.++...  ....+.   +|...+.+++|+||+.
T Consensus       221 ------~~~~s~dg~-----~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~---~~~~~~~~~~~spdg~  284 (297)
T 2ojh_A          221 ------FPHPSPSGD-----KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE--TLFDLF---GGQGTMNSPNWSPDGD  284 (297)
T ss_dssp             ------EEEECTTSS-----EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE--EEEEEE---ESTTTSCSCCBCTTSS
T ss_pred             ------CeEECCCCC-----EEEEEEcCCCCCcccccCceEEEEEecCCCCce--eeeccC---CCCcccccceECCCCC
Confidence                  889999987     77777654100      0045999998765422  222222   3566899999999974

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=4.6e-16  Score=121.03  Aligned_cols=196  Identities=10%  Similarity=0.119  Sum_probs=128.7

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEe--Eeee-cCccEEEEEEcCCCCCCEEEEEe-cCCeEEE
Q 026295           10 KGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNL--KTKV-HAGAILKVVWVPPEFGDAVACIC-SDGSLLL   84 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~--~~~~-h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~i   84 (240)
                      ..+.+++|+|+|++|++++ .++.|++|++....  ......  .+.. ....+..++|+|+  +++++.++ .++.|.+
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~pd--g~~l~~~~~~~~~i~~  204 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG--HLVAQDPAEVTTVEGAGPRHMVFHPN--EQYAYCVNELNSSVDV  204 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS--CEEEEEEEEEECSTTCCEEEEEECTT--SSEEEEEETTTTEEEE
T ss_pred             CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC--ceeeecccccccCCCCCcceEEECCC--CCEEEEEeCCCCEEEE
Confidence            4588899999999888887 88999999997422  223222  2332 2346889999999  88665554 7899999


Q ss_pred             EEeeeccCCCcccEEEEEeee---c---cccEEeEEEeecCCCcEEEE-EeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFES---T---STQVLDVQFGVSSTSLKLVA-AYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      |++....+   .+.....+..   .   ...+..++|+|  ++.+|++ ...++.|.+|++....  ...+.+..+..+.
T Consensus       205 ~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~i~~s~--dg~~l~v~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~  277 (343)
T 1ri6_A          205 WELKDPHG---NIECVQTLDMMPENFSDTRWAADIHITP--DGRHLYACDRTASLITVFSVSEDG--SVLSKEGFQPTET  277 (343)
T ss_dssp             EESSCTTS---CCEEEEEEECSCTTCCSCCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTS--CCEEEEEEEECSS
T ss_pred             EEecCCCC---cEEEEeeccccCccccccCCccceEECC--CCCEEEEEecCCCEEEEEEEcCCC--CceEEeeeecCCC
Confidence            99964221   1122333321   1   23566899999  8887764 4478999999997311  1134444443322


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      . +.          .++|+|++.     +|++++.++    +.|.+|+++.....+.....++.    .....+++|.|+
T Consensus       278 ~-~~----------~~~~s~dg~-----~l~~~~~~~----~~v~v~~~d~~~g~~~~~~~~~~----g~~p~~i~~~~~  333 (343)
T 1ri6_A          278 Q-PR----------GFNVDHSGK-----YLIAAGQKS----HHISVYEIVGEQGLLHEKGRYAV----GQGPMWVVVNAH  333 (343)
T ss_dssp             S-CC----------CEEECTTSS-----EEEEECTTT----CEEEEEEEETTTTEEEEEEEEEC----SSSCCEEEEEEE
T ss_pred             c-cc----------eEEECCCCC-----EEEEecCCC----CeEEEEEEcCCCceeeEcccccc----CCCCeeEEEEcc
Confidence            2 33          899999987     777777443    99999988755444444455543    235788999997


Q ss_pred             CCC
Q 026295          238 IGR  240 (240)
Q Consensus       238 ~~~  240 (240)
                      ..|
T Consensus       334 ~~~  336 (343)
T 1ri6_A          334 EGG  336 (343)
T ss_dssp             C--
T ss_pred             cCC
Confidence            654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.77  E-value=1.3e-18  Score=148.69  Aligned_cols=200  Identities=12%  Similarity=0.107  Sum_probs=128.8

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc---cEEEEEEcCCCCCCEEEEEecC--------
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG---AILKVVWVPPEFGDAVACICSD--------   79 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~d--------   79 (240)
                      .+.+++|+|+|+++++ +.||.|++||+.     +++....+..|..   .|.+++|+|+  |++|++++.+        
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~-----~g~~~~~~~~~~~~~~~v~~~~~SpD--g~~l~~~~~~~~~~~~~~   89 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVE-----TNTSTVLIEGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSY   89 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGG-----GCCCEEEECTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCC
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECC-----CCcEEEEeccccccccccceEEECCC--CCEEEEEecCccceeecc
Confidence            4678999999998876 789999999998     4445555555554   4999999999  9999998764        


Q ss_pred             -CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           80 -GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        80 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                       +.+.+||+..+..     ..+.....+...+..++|+|  +|+.|+.++. +.|.+||+.+.      +.......+..
T Consensus        90 ~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~~~~SP--dG~~la~~~~-~~i~~~~~~~g------~~~~~~~~~~~  155 (723)
T 1xfd_A           90 TGYYVLSKIPHGDP-----QSLDPPEVSNAKLQYAGWGP--KGQQLIFIFE-NNIYYCAHVGK------QAIRVVSTGKE  155 (723)
T ss_dssp             CSEEEEEESSSCCC-----EECCCTTCCSCCCSBCCBCS--STTCEEEEET-TEEEEESSSSS------CCEEEECCCBT
T ss_pred             eeeEEEEECCCCce-----EeccCCccccccccccEECC--CCCEEEEEEC-CeEEEEECCCC------ceEEEecCCCC
Confidence             7788999976521     22222223444588999999  9999998886 78999998762      22222222111


Q ss_pred             ee-ec-------cccccceeeeEEEeCCCCCCCCceEEEEecCCCC-----------------------------CCCeE
Q 026295          159 SV-TM-------FRKASCISASISWNPQKGENQGSSFVLGFNSDTP-----------------------------QLNSS  201 (240)
Q Consensus       159 ~v-~~-------~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~-----------------------------~~~~i  201 (240)
                      .+ ..       .......+..++|+|++.     .|++++.++..                             ....|
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-----~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGT-----RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSS-----EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCC-----EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            11 00       000000113799999998     78888755200                             00278


Q ss_pred             EEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          202 KVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       202 ~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ++||+.++.....+... .....|...+..++||||+
T Consensus       231 ~~~d~~~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg  266 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPP-DDPRMREYYITMVKWATST  266 (723)
T ss_dssp             EEEESSSSCCCEECCCC-CCGGGSSEEEEEEEESSSS
T ss_pred             EEEECCCCceeEEeeCC-ccCCCccceeEEEEEeCCC
Confidence            88888765532111100 0011235589999999997

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.77  E-value=1.3e-16  Score=124.69  Aligned_cols=177  Identities=8%  Similarity=0.081  Sum_probs=131.7

Q ss_pred             eEEEEECCCCCEEEEEe--CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           12 TTSSSWNYCGQRLATGS--TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      +.+++|+|+|+++++++  .++.|.+||..     +.+.+..+..+...+..+.|+|+  ++++++++.++.|.+||...
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-----~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~i~~~d~~~  215 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGG-----NIKLKTAIQNTGKMSTGLALDSE--GKRLYTTNADGELITIDTAD  215 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETT-----TTEEEEEECCCCTTCCCCEEETT--TTEEEEECTTSEEEEEETTT
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCC-----CCceEEEecCCCCccceEEECCC--CCEEEEEcCCCeEEEEECCC
Confidence            68899999999877776  47889999998     55667777655566889999999  99999999999999999876


Q ss_pred             ccCCCcccEEEEEeee----ccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           90 EDAQPLQWKLCKSFES----TSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      +       +....+..    +...+..++|+|  ++.++++++. ++.|.+||+.+      .+....+.....  .   
T Consensus       216 ~-------~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~--~---  275 (353)
T 3vgz_A          216 N-------KILSRKKLLDDGKEHFFINISLDT--ARQRAFITDSKAAEVLVVDTRN------GNILAKVAAPES--L---  275 (353)
T ss_dssp             T-------EEEEEEECCCSSSCCCEEEEEEET--TTTEEEEEESSSSEEEEEETTT------CCEEEEEECSSC--C---
T ss_pred             C-------eEEEEEEcCCCCCCcccceEEECC--CCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCC--c---
Confidence            5       66655553    445678899999  8887766664 48999999976      454444433211  2   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             .++|+|++.     .++++...+    +.|.+||..+..    ....+..    ...+.+++|+||+.
T Consensus       276 -------~~~~s~dg~-----~l~v~~~~~----~~v~~~d~~~~~----~~~~~~~----~~~~~~~~~s~dg~  326 (353)
T 3vgz_A          276 -------AVLFNPARN-----EAYVTHRQA----GKVSVIDAKSYK----VVKTFDT----PTHPNSLALSADGK  326 (353)
T ss_dssp             -------CEEEETTTT-----EEEEEETTT----TEEEEEETTTTE----EEEEEEC----CSEEEEEEECTTSC
T ss_pred             -------eEEECCCCC-----EEEEEECCC----CeEEEEECCCCe----EEEEEec----CCCCCeEEEcCCCC
Confidence                   789999986     565555433    999999987653    2233332    23689999999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.76  E-value=1e-16  Score=124.46  Aligned_cols=187  Identities=9%  Similarity=0.028  Sum_probs=125.2

Q ss_pred             ccceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEE-EeEeeecCccEEEEEEcCCCCCCEEEEEecCC---eEE
Q 026295            9 DKGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTC-NLKTKVHAGAILKVVWVPPEFGDAVACICSDG---SLL   83 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---~v~   83 (240)
                      ...+ .++|+|+|++|++++. ++.|.+||+...     +. ...+..+..+..+++|+|+  +++++++..++   .|.
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~i~  111 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE-----PPKVVAIQEGQSSMADVDITPD--DQFAVTVTGLNHPFNMQ  111 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS-----SCEEEEEEECSSCCCCEEECTT--SSEEEECCCSSSSCEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC-----ceeEEecccCCCCccceEECCC--CCEEEEecCCCCcccEE
Confidence            3455 9999999997766665 889999999733     33 5556666666655999999  99888555442   899


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCc-EEEEEecCcccccceeEEeeeecccceee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGH-VKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~-v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      +||+..+       +.+..+... .....++|+|  +|++++++ ..++. |.+|++.......... ...+. ...   
T Consensus       112 v~d~~~~-------~~~~~~~~~-~~~~~~~~sp--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~~~-~~~---  176 (331)
T 3u4y_A          112 SYSFLKN-------KFISTIPIP-YDAVGIAISP--NGNGLILIDRSSANTVRRFKIDADGVLFDTG-QEFIS-GGT---  176 (331)
T ss_dssp             EEETTTT-------EEEEEEECC-TTEEEEEECT--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EEEEC-SSS---
T ss_pred             EEECCCC-------CeEEEEECC-CCccceEECC--CCCEEEEEecCCCceEEEEEECCCCcEeecC-Ccccc-CCC---
Confidence            9999765       666666543 4568999999  88755544 55688 9999997532111111 11111 111   


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             ....++|+|++.     +|+++...+    +.|++||+.+.... .....+.    ....+..++|+||+.
T Consensus       177 -------~~~~~~~spdg~-----~l~v~~~~~----~~v~v~d~~~~~~~-~~~~~~~----~~~~~~~~~~spdg~  233 (331)
T 3u4y_A          177 -------RPFNITFTPDGN-----FAFVANLIG----NSIGILETQNPENI-TLLNAVG----TNNLPGTIVVSRDGS  233 (331)
T ss_dssp             -------SEEEEEECTTSS-----EEEEEETTT----TEEEEEECSSTTSC-EEEEEEE----CSSCCCCEEECTTSS
T ss_pred             -------CccceEECCCCC-----EEEEEeCCC----CeEEEEECCCCccc-ceeeecc----CCCCCceEEECCCCC
Confidence                   123899999986     565555433    99999998865531 1133333    224788999999985

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=1.9e-16  Score=123.88  Aligned_cols=185  Identities=6%  Similarity=-0.007  Sum_probs=132.8

Q ss_pred             cccceEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecC
Q 026295            8 LDKGTTSSSWNYCGQRLATGST-------DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSD   79 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~-------d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d   79 (240)
                      +...+..++|+|++++|++++.       ++.|.+||..     +.+.+..+.. ...+..+.|+|+  +++++ +...+
T Consensus        39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~-----~~~~~~~~~~-~~~~~~~~~s~d--g~~l~v~~~~~  110 (353)
T 3vgz_A           39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV-----TLEVTQAIHN-DLKPFGATINNT--TQTLWFGNTVN  110 (353)
T ss_dssp             EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT-----TCCEEEEEEE-SSCCCSEEEETT--TTEEEEEETTT
T ss_pred             hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC-----CCeEEEEEec-CCCcceEEECCC--CCEEEEEecCC
Confidence            4457889999999998888874       4689999998     4556666654 345788999999  88554 45557


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccc---------cEEeEEEeecCCCcEEEEEe--CCCcEEEEEecCccccccee
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTST---------QVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~  148 (240)
                      +.|.+||..++       +.+..+..+..         .+..++|+|  ++.++++++  .++.|.+||+.+      .+
T Consensus       111 ~~v~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~------~~  175 (353)
T 3vgz_A          111 SAVTAIDAKTG-------EVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGN------IK  175 (353)
T ss_dssp             TEEEEEETTTC-------CEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTT------TE
T ss_pred             CEEEEEeCCCC-------eeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCC------Cc
Confidence            89999999765       55555554321         268899999  888777665  478899999987      45


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeec-CCCCCC
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELAL-PEDRSD  227 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~-~~~h~~  227 (240)
                      ....+......+.          .++|+|++.     +|+++..+     +.|.+||..+....+    .+.. ..++..
T Consensus       176 ~~~~~~~~~~~~~----------~~~~s~dg~-----~l~~~~~~-----~~i~~~d~~~~~~~~----~~~~~~~~~~~  231 (353)
T 3vgz_A          176 LKTAIQNTGKMST----------GLALDSEGK-----RLYTTNAD-----GELITIDTADNKILS----RKKLLDDGKEH  231 (353)
T ss_dssp             EEEEECCCCTTCC----------CCEEETTTT-----EEEEECTT-----SEEEEEETTTTEEEE----EEECCCSSSCC
T ss_pred             eEEEecCCCCccc----------eEEECCCCC-----EEEEEcCC-----CeEEEEECCCCeEEE----EEEcCCCCCCc
Confidence            5555542222223          789999987     78888887     999999987654222    2222 223455


Q ss_pred             ceEEEEEecCCC
Q 026295          228 EVYAVAWALNIG  239 (240)
Q Consensus       228 ~v~~v~~sp~~~  239 (240)
                      .+..++|+||+.
T Consensus       232 ~~~~~~~s~dg~  243 (353)
T 3vgz_A          232 FFINISLDTARQ  243 (353)
T ss_dssp             CEEEEEEETTTT
T ss_pred             ccceEEECCCCC
Confidence            788999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.75  E-value=7.1e-16  Score=127.81  Aligned_cols=161  Identities=12%  Similarity=0.045  Sum_probs=119.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcC----CCCCCEEEEEec-CCeEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVP----PEFGDAVACICS-DGSLLLW   85 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~~~-d~~v~iw   85 (240)
                      .+..++|+|+|++|++++.|+.|++||+...   +.+.+..+.. ...+..++|+|    +  |+++++++. +++|.+|
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~---t~~~~~~i~~-g~~p~~va~sp~~~~d--g~~l~v~~~~~~~v~v~  253 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAK---EPTKVAEIKI-GIEARSVESSKFKGYE--DRYTIAGAYWPPQFAIM  253 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSS---SCEEEEEEEC-CSEEEEEEECCSTTCT--TTEEEEEEEESSEEEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCC---CCcEEEEEec-CCCcceEEeCCCcCCC--CCEEEEEEccCCeEEEE
Confidence            3889999999999999999999999999211   5677777774 45689999999    9  999988874 8999999


Q ss_pred             EeeeccCCCcccEEEEEeeec-----------cccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecCcccccceeEEeee
Q 026295           86 EEIVEDAQPLQWKLCKSFEST-----------STQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLDPLILKNWQLQAEF  153 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~  153 (240)
                      |..+.       +++..+..+           ...+..+.++|  ++. ++++...+++|.+||+.+....   . ...+
T Consensus       254 D~~t~-------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~--~~~~~~vs~~~~g~i~vvd~~~~~~l---~-~~~i  320 (543)
T 1nir_A          254 DGETL-------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASH--EHPEFIVNVKETGKVLLVNYKDIDNL---T-VTSI  320 (543)
T ss_dssp             ETTTC-------CEEEEEECCEECSSSCCEESCCCEEEEEECS--SSSEEEEEETTTTEEEEEECTTSSSC---E-EEEE
T ss_pred             ecccc-------ccceeecccCcccCccccccCCceEEEEECC--CCCEEEEEECCCCeEEEEEecCCCcc---e-eEEe
Confidence            98665       666666532           23688899988  654 5667778899999999763211   1 1122


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      . +...+.          .+.|+|++.     +|++++..+    ++|.+||..+++
T Consensus       321 ~-~~~~~~----------~~~~spdg~-----~l~va~~~~----~~v~v~D~~tg~  357 (543)
T 1nir_A          321 G-AAPFLH----------DGGWDSSHR-----YFMTAANNS----NKVAVIDSKDRR  357 (543)
T ss_dssp             E-CCSSCC----------CEEECTTSC-----EEEEEEGGG----TEEEEEETTTTE
T ss_pred             c-cCcCcc----------CceECCCCC-----EEEEEecCC----CeEEEEECCCCe
Confidence            2 222233          799999987     666665433    899999988764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.74  E-value=5.3e-16  Score=128.53  Aligned_cols=187  Identities=9%  Similarity=-0.026  Sum_probs=133.9

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe--eeccCC
Q 026295           16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE--IVEDAQ   93 (240)
Q Consensus        16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~--~~~~~~   93 (240)
                      +|+|++.++++++.|++|.+||..     +++++.++..+.. +..+.|+|+  |+++++++.|+.|.+||+  .+.   
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~-----t~~~~~~i~~g~~-~~~v~~spd--g~~l~v~~~d~~V~v~D~~~~t~---  212 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGD-----SKKIVKVIDTGYA-VHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP---  212 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETT-----TCCEEEEEECSTT-EEEEEECTT--SCEEEEEETTSEEEEEETTSSSC---
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECC-----CceEEEEEecCcc-cceEEECCC--CCEEEEECCCCeEEEEECcCCCC---
Confidence            488999999999999999999998     6677888874333 889999999  999999999999999999  554   


Q ss_pred             CcccEEEEEeeeccccEEeEEEee--cCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccccc-cce
Q 026295           94 PLQWKLCKSFESTSTQVLDVQFGV--SSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA-SCI  169 (240)
Q Consensus        94 ~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  169 (240)
                          +++..+.. ...+..++|+|  ..+|+++++++ .+++|.+||..+      .+++..+..+...+.....+ ...
T Consensus       213 ----~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t------~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          213 ----TKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET------LEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             ----EEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT------CCEEEEEECCEECSSSCCEESCCC
T ss_pred             ----cEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc------cccceeecccCcccCccccccCCc
Confidence                67777764 45679999975  11677788877 589999999876      56666554322111000000 002


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +..+.++|++..    ++++...+     +.|.+||+.+.....  ...+.    +...+.+++|+||+.
T Consensus       282 v~~i~~s~~~~~----~~vs~~~~-----g~i~vvd~~~~~~l~--~~~i~----~~~~~~~~~~spdg~  336 (543)
T 1nir_A          282 VAAIIASHEHPE----FIVNVKET-----GKVLLVNYKDIDNLT--VTSIG----AAPFLHDGGWDSSHR  336 (543)
T ss_dssp             EEEEEECSSSSE----EEEEETTT-----TEEEEEECTTSSSCE--EEEEE----CCSSCCCEEECTTSC
T ss_pred             eEEEEECCCCCE----EEEEECCC-----CeEEEEEecCCCcce--eEEec----cCcCccCceECCCCC
Confidence            237889998752    55555555     999999998754332  22332    445789999999975

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.74  E-value=2.1e-17  Score=141.27  Aligned_cols=192  Identities=9%  Similarity=0.055  Sum_probs=120.9

Q ss_pred             ceEEEEECCCCCEEEEEeCC---------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295           11 GTTSSSWNYCGQRLATGSTD---------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .|.+++|||||++|++++.+         +.+.+||+...   ..+.+.....|...+..++|+|+  |+.|+.++. +.
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~~~~SPd--G~~la~~~~-~~  135 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG---DPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIFE-NN  135 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC---CCEECCCTTCCSCCCSBCCBCSS--TTCEEEEET-TE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCC---ceEeccCCccccccccccEECCC--CCEEEEEEC-Ce
Confidence            48999999999999999875         67889999843   22233333345556889999999  999998875 79


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccc------------------cEEeEEEeecCCCcEEEEEeCCC------------
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTST------------------QVLDVQFGVSSTSLKLVAAYSDG------------  131 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~l~~~~~dg------------  131 (240)
                      |++||+..+       +.......+..                  .+..++|+|  +|++|++++.|+            
T Consensus       136 i~~~~~~~g-------~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          136 IYYCAHVGK-------QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             EEEESSSSS-------CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEEECCCC-------ceEEEecCCCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccC
Confidence            999998765       33333332222                  237899999  999999887553            


Q ss_pred             ----------------------cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEE
Q 026295          132 ----------------------HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVL  189 (240)
Q Consensus       132 ----------------------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~  189 (240)
                                            .|.+||+.+.      +....+..+...    ......+..++|+|++.     +|++
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~------~~~~~l~~~~~~----~~~~~~~~~~~~SpDg~-----~l~~  271 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGP------THDLEMMPPDDP----RMREYYITMVKWATSTK-----VAVT  271 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSS------CCCEECCCCCCG----GGSSEEEEEEEESSSSE-----EEEE
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCC------ceeEEeeCCccC----CCccceeEEEEEeCCCe-----EEEE
Confidence                                  5777776652      221222221000    00011233899999986     6666


Q ss_pred             EecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce----EEEEEecCCC
Q 026295          190 GFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV----YAVAWALNIG  239 (240)
Q Consensus       190 ~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v----~~v~~sp~~~  239 (240)
                      ....+ .....|++||+.++....    .+..  .+...+    ..++|+||+.
T Consensus       272 ~~~~~-~~~~~i~~~d~~~g~~~~----~~~~--~~~~~~~~~~~~~~~spdg~  318 (723)
T 1xfd_A          272 WLNRA-QNVSILTLCDATTGVCTK----KHED--ESEAWLHRQNEEPVFSKDGR  318 (723)
T ss_dssp             EEETT-SCEEEEEEEETTTCCEEE----EEEE--ECSSCCCCCCCCCEECTTSC
T ss_pred             EEcCC-CCeEEEEEEeCCCCcceE----EEEe--ccCCEEeccCCCceEcCCCC
Confidence            54320 111578999987654221    1111  122344    3789999985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.73  E-value=5.9e-17  Score=143.90  Aligned_cols=183  Identities=14%  Similarity=0.096  Sum_probs=136.4

Q ss_pred             cccceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc-cEEEEEEcCCCCCCEEEEEecCCeEE-E
Q 026295            8 LDKGTTSSSWN-YCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG-AILKVVWVPPEFGDAVACICSDGSLL-L   84 (240)
Q Consensus         8 h~~~v~~~~~s-~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~d~~v~-i   84 (240)
                      |...+.+++|+ |+|++|++++ ++.|.+|+....     .. ..+..|.. .+..+.|+ +  |+.++.++.+..+. +
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~-----~~-~~~~~~~~~~~~~~~~s-d--g~~l~~~s~~~~l~~~  363 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT-----YV-LKVPEPLRIRYVRRGGD-T--KVAFIHGTREGDFLGI  363 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-----BE-EECSCCSCEEEEEECSS-S--EEEEEEEETTEEEEEE
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-----ce-EEccCCCcceEEeeeEc-C--CCeEEEEECCCceEEE
Confidence            45579999999 9999999988 689999998732     22 23456666 89999999 8  99999988877777 8


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      |++..+       .. ..+..+...+..++|+|  +|++|++++.++.|++||+.+      ++....+..+...+.   
T Consensus       364 ~d~~~~-------~~-~~l~~~~~~~~~~~~Sp--DG~~la~~~~~~~v~~~d~~t------g~~~~~~~~~~~~v~---  424 (1045)
T 1k32_A          364 YDYRTG-------KA-EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLET------GKPTVIERSREAMIT---  424 (1045)
T ss_dssp             EETTTC-------CE-EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTT------CCEEEEEECSSSCCC---
T ss_pred             EECCCC-------Cc-eEecCCccceeeeEECC--CCCEEEEECCCCeEEEEECCC------CceEEeccCCCCCcc---
Confidence            887653       22 33336667899999999  999999999999999999986      444444445555555   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCC-----CCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSD-----TPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd-----~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                             .++|+|++.     +|++++.++     ....+.|++||+.++.     ...+.   .|...+..++|+||+.
T Consensus       425 -------~~~~SpDG~-----~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-----~~~l~---~~~~~~~~~~~spdG~  484 (1045)
T 1k32_A          425 -------DFTISDNSR-----FIAYGFPLKHGETDGYVMQAIHVYDMEGRK-----IFAAT---TENSHDYAPAFDADSK  484 (1045)
T ss_dssp             -------CEEECTTSC-----EEEEEEEECSSTTCSCCEEEEEEEETTTTE-----EEECS---CSSSBEEEEEECTTSC
T ss_pred             -------ceEECCCCC-----eEEEEecCccccccCCCCCeEEEEECCCCc-----EEEee---CCCcccCCceEcCCCC
Confidence                   899999997     788877640     0000489999987643     22222   4666899999999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.73  E-value=9.6e-15  Score=114.87  Aligned_cols=190  Identities=9%  Similarity=0.066  Sum_probs=121.7

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCC----CcEEE----EeEeeecCccEEEEEEcCCCCCCEEEEEe-cCC
Q 026295           11 GTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSS----SSFTC----NLKTKVHAGAILKVVWVPPEFGDAVACIC-SDG   80 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~----~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~   80 (240)
                      .+.+++|+|+|++|++++ .++.|++|++.....    .....    ......+...+..++|+|+  |+++++++ .++
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~v~~~~~~  233 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSD--GKFAYLINEIGG  233 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTT--SSEEEEEETTTC
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCC--CCEEEEEcCCCC
Confidence            457899999999766655 478999999874321    00111    1111233456789999999  99877776 689


Q ss_pred             eEEEEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCC--CcEEEEEecCcccccceeEEeeeec
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSD--GHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~d--g~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      .|.+|++..+     .+..+..+.   .+......++|+|  +|++|+++..+  +.|.+|++....  .....+..+..
T Consensus       234 ~v~v~~~~~g-----~~~~~~~~~~~~~~~~~~~~i~~sp--dg~~l~v~~~~~~~~i~v~~~~~~~--g~~~~~~~~~~  304 (361)
T 3scy_A          234 TVIAFRYADG-----MLDEIQTVAADTVNAQGSGDIHLSP--DGKYLYASNRLKADGVAIFKVDETN--GTLTKVGYQLT  304 (361)
T ss_dssp             EEEEEEEETT-----EEEEEEEEESCSSCCCCEEEEEECT--TSSEEEEEECSSSCEEEEEEECTTT--CCEEEEEEEEC
T ss_pred             eEEEEEecCC-----ceEEeEEEecCCCCCCCcccEEECC--CCCEEEEECCCCCCEEEEEEEcCCC--CcEEEeeEecC
Confidence            9999999743     112333332   2234567999999  99988776654  899999996210  11233333332


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                       ...+.          .++|+|++.     +|++++.++    +.|.+|+++.........    ....+...+.||.|.
T Consensus       305 -g~~~~----------~~~~spdg~-----~l~~~~~~~----~~v~v~~~d~~~g~~~~~----~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          305 -GIHPR----------NFIITPNGK-----YLLVACRDT----NVIQIFERDQATGLLTDI----KKDIKVDKPVCLKFV  360 (361)
T ss_dssp             -SSCCC----------EEEECTTSC-----EEEEEETTT----TEEEEEEECTTTCCEEEC----SCCEECSSEEEEEEE
T ss_pred             -CCCCc----------eEEECCCCC-----EEEEEECCC----CCEEEEEEECCCCcEeec----ceeeeCCCCeEEEEc
Confidence             22223          899999997     788887544    999999887543332221    111233478999997

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.73  E-value=3.3e-16  Score=134.27  Aligned_cols=188  Identities=12%  Similarity=-0.002  Sum_probs=129.3

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc----------------EEEEEEcCC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA----------------ILKVVWVPP   67 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~----------------v~~~~~~~~   67 (240)
                      .+..|...+..++|||+|++|+.++. +.|++||+..     .+.......+...                +..+.|+|+
T Consensus       146 ~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~-----g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD  219 (741)
T 2ecf_A          146 QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLAS-----GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD  219 (741)
T ss_dssp             BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTT-----TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT
T ss_pred             EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCC-----CCEEEeccCCccceeccccceeeeeccccccceEECCC
Confidence            35567788999999999999999885 6999999973     3443333333322                478999999


Q ss_pred             CCCCEEEEEecCC---------------------------------eEEEEEeee-ccCCCcccEEEEEee--eccccEE
Q 026295           68 EFGDAVACICSDG---------------------------------SLLLWEEIV-EDAQPLQWKLCKSFE--STSTQVL  111 (240)
Q Consensus        68 ~~~~~l~s~~~d~---------------------------------~v~iwd~~~-~~~~~~~~~~~~~~~--~~~~~v~  111 (240)
                        |++|++++.|+                                 .|.+||+.. +       +......  .+...+.
T Consensus       220 --g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~-------~~~~~~~~~~~~~~~~  290 (741)
T 2ecf_A          220 --DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA-------QTQWIDLGKEQDIYLA  290 (741)
T ss_dssp             --SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC-------CCEEECCCSCSSEEEE
T ss_pred             --CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC-------ceEEecCCCCcceEEE
Confidence              99999887765                                 778888865 4       3222221  3667889


Q ss_pred             eEEEeecCCCcEEEEEeC-----CCcEEEEEecCcccccceeEEeeeecccc-eeeccccccceeeeEEEeCCCCCCCCc
Q 026295          112 DVQFGVSSTSLKLVAAYS-----DGHVKVYELLDPLILKNWQLQAEFQNAID-SVTMFRKASCISASISWNPQKGENQGS  185 (240)
Q Consensus       112 ~~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~v~~~p~~~~~~~~  185 (240)
                      .++| |  +|++|++++.     +..|.+||+.+      ++....+..+.. .+.       .+..++|+|++.     
T Consensus       291 ~~~~-p--Dg~~l~~~~~~~~~~~~~i~~~d~~~------g~~~~~~~~~~~~~~~-------~~~~~~~spdg~-----  349 (741)
T 2ecf_A          291 RVNW-R--DPQHLSFQRQSRDQKKLDLVEVTLAS------NQQRVLAHETSPTWVP-------LHNSLRFLDDGS-----  349 (741)
T ss_dssp             EEEE-E--ETTEEEEEEEETTSSEEEEEEEETTT------CCEEEEEEEECSSCCC-------CCSCCEECTTSC-----
T ss_pred             EEEe-C--CCCEEEEEEecccCCeEEEEEEECCC------CceEEEEEcCCCCcCC-------cCCceEECCCCe-----
Confidence            9999 9  9998887664     56799999886      343333333221 110       112789999986     


Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEE-EEecCCC
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAV-AWALNIG  239 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v-~~sp~~~  239 (240)
                      +++++..+     +.++||.++....    ...+.   .|...|..+ +|+||+.
T Consensus       350 ~~~~~~~~-----g~~~l~~~~~~~~----~~~l~---~~~~~v~~~~~~s~dg~  392 (741)
T 2ecf_A          350 ILWSSERT-----GFQHLYRIDSKGK----AAALT---HGNWSVDELLAVDEKAG  392 (741)
T ss_dssp             EEEEECTT-----SSCEEEEECSSSC----EEESC---CSSSCEEEEEEEETTTT
T ss_pred             EEEEecCC-----CccEEEEEcCCCC----eeeee---ecceEEEeEeEEeCCCC
Confidence            78888777     9899998874322    22232   355578887 5999985

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.71  E-value=2.3e-15  Score=116.81  Aligned_cols=178  Identities=9%  Similarity=0.115  Sum_probs=119.0

Q ss_pred             EEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEEEEeeeccC
Q 026295           15 SSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLLWEEIVEDA   92 (240)
Q Consensus        15 ~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~   92 (240)
                      ..|.++++ .+++++.++.|++||..     +.+.+..+..+...+ .++|+|+  ++++++++. ++.|.+||...+  
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~-----~~~~~~~~~~~~~~~-~~~~s~d--g~~l~~~~~~~~~i~~~d~~~~--   72 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTD-----TLEILNQITLGYDFV-DTAITSD--CSNVVVTSDFCQTLVQIETQLE--   72 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETT-----TCCEEEEEECCCCEE-EEEECSS--SCEEEEEESTTCEEEEEECSSS--
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCc-----ccceeeeEEccCCcc-eEEEcCC--CCEEEEEeCCCCeEEEEECCCC--
Confidence            34566555 47778888999999998     445556665555666 9999999  886666555 889999999765  


Q ss_pred             CCcccEE-EEEeeeccccEEeEEEeecCCCcEEEEEeCCC---cEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           93 QPLQWKL-CKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        93 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                           +. ...+..+.....+++|+|  ++.++++...++   .|.+||+.+      .+....+..... .        
T Consensus        73 -----~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~v~d~~~------~~~~~~~~~~~~-~--------  130 (331)
T 3u4y_A           73 -----PPKVVAIQEGQSSMADVDITP--DDQFAVTVTGLNHPFNMQSYSFLK------NKFISTIPIPYD-A--------  130 (331)
T ss_dssp             -----SCEEEEEEECSSCCCCEEECT--TSSEEEECCCSSSSCEEEEEETTT------TEEEEEEECCTT-E--------
T ss_pred             -----ceeEEecccCCCCccceEECC--CCCEEEEecCCCCcccEEEEECCC------CCeEEEEECCCC-c--------
Confidence                 33 555555555555599999  999888555553   899999986      454544433222 1        


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCe-EEEEEeecCCCCcce-eEeeecCCCCCCceEEEEEecCCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNS-SKVWEFDEAHNRWLP-VAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~-i~iw~~~~~~~~~~~-~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                        ..++|+|++..    ++++...+     +. |.+|++......... ...+    .....+..++|+||+.
T Consensus       131 --~~~~~spdg~~----l~~~~~~~-----~~~i~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~spdg~  188 (331)
T 3u4y_A          131 --VGIAISPNGNG----LILIDRSS-----ANTVRRFKIDADGVLFDTGQEFI----SGGTRPFNITFTPDGN  188 (331)
T ss_dssp             --EEEEECTTSSC----EEEEEETT-----TTEEEEEEECTTCCEEEEEEEEE----CSSSSEEEEEECTTSS
T ss_pred             --cceEECCCCCE----EEEEecCC-----CceEEEEEECCCCcEeecCCccc----cCCCCccceEECCCCC
Confidence              28999999862    44444554     77 999999854322211 1112    1334689999999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.71  E-value=1.6e-16  Score=135.53  Aligned_cols=194  Identities=12%  Similarity=0.083  Sum_probs=128.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc--------------EEEEEEcCCCCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA--------------ILKVVWVPPEFG   70 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~--------------v~~~~~~~~~~~   70 (240)
                      +..+...+.+++|+|+|++|+.+ .++.|++|++...+....+.......+...              +.++.|+|+  |
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpD--g  192 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPK--G  192 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTT--S
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCC--C
Confidence            34456678889999999999995 679999999974000002222222222222              478999999  9


Q ss_pred             CEEEEEe---------------------------------cCCeEEEEEeeeccCCCcccEEEEEe--eeccccEEeEEE
Q 026295           71 DAVACIC---------------------------------SDGSLLLWEEIVEDAQPLQWKLCKSF--ESTSTQVLDVQF  115 (240)
Q Consensus        71 ~~l~s~~---------------------------------~d~~v~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~  115 (240)
                      ++|++++                                 .+..|.+||+..+       +.....  ..+...+..++|
T Consensus       193 ~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-------~~~~~~~~~~~~~~~~~~~~  265 (706)
T 2z3z_A          193 SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-------KTVYLQTGEPKEKFLTNLSW  265 (706)
T ss_dssp             SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-------EEEECCCCSCTTCEEEEEEE
T ss_pred             CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-------ceEeeccCCCCceeEeeEEE
Confidence            9999887                                 3467999998765       433322  245567899999


Q ss_pred             eecCCCcEEEEEeCCC-----cEEEEEecCcccccceeEEeeee-cc-cceeeccccccceeeeEEEeC--CCCCCCCce
Q 026295          116 GVSSTSLKLVAAYSDG-----HVKVYELLDPLILKNWQLQAEFQ-NA-IDSVTMFRKASCISASISWNP--QKGENQGSS  186 (240)
Q Consensus       116 ~~~~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~~~~-~~-~~~v~~~~~~~~~~~~v~~~p--~~~~~~~~~  186 (240)
                      +|  +|++|++++.++     .|.+||+.+      ++....+. .. ...+       ..+..+.|+|  ++.     +
T Consensus       266 sp--dg~~l~~~~~~~~~~~~~v~~~d~~~------g~~~~~~~~~~~~~~~-------~~~~~~~~sp~~dg~-----~  325 (706)
T 2z3z_A          266 SP--DENILYVAEVNRAQNECKVNAYDAET------GRFVRTLFVETDKHYV-------EPLHPLTFLPGSNNQ-----F  325 (706)
T ss_dssp             CT--TSSEEEEEEECTTSCEEEEEEEETTT------CCEEEEEEEEECSSCC-------CCCSCCEECTTCSSE-----E
T ss_pred             EC--CCCEEEEEEeCCCCCeeEEEEEECCC------CceeeEEEEccCCCeE-------CccCCceeecCCCCE-----E
Confidence            99  999998887775     899999876      21111221 11 1111       0112789999  876     7


Q ss_pred             EEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE-EEEecCCC
Q 026295          187 FVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA-VAWALNIG  239 (240)
Q Consensus       187 l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~-v~~sp~~~  239 (240)
                      |+++..+     +.++||.++....   ....+.   .|...+.. ++|+||+.
T Consensus       326 l~~~~~~-----g~~~l~~~~~~~~---~~~~l~---~~~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          326 IWQSRRD-----GWNHLYLYDTTGR---LIRQVT---KGEWEVTNFAGFDPKGT  368 (706)
T ss_dssp             EEEECTT-----SSCEEEEEETTSC---EEEECC---CSSSCEEEEEEECTTSS
T ss_pred             EEEEccC-----CccEEEEEECCCC---EEEecC---CCCeEEEeeeEEcCCCC
Confidence            8888777     9999999873221   222332   35557877 89999974

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.70  E-value=1e-15  Score=130.64  Aligned_cols=184  Identities=10%  Similarity=0.122  Sum_probs=121.7

Q ss_pred             eEEEEECCCCCEEEEEe---------------------------------CCCcEEEEeCCCCCCCcEEEEeEe--eecC
Q 026295           12 TTSSSWNYCGQRLATGS---------------------------------TDGTLSIFDSPDPSSSSFTCNLKT--KVHA   56 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~---------------------------------~d~~i~iw~~~~~~~~~~~~~~~~--~~h~   56 (240)
                      +.+++|+|||++|++++                                 .+..|++||+..     .+.....  ..|.
T Consensus       183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~-----~~~~~~~~~~~~~  257 (706)
T 2z3z_A          183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT-----GKTVYLQTGEPKE  257 (706)
T ss_dssp             CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT-----TEEEECCCCSCTT
T ss_pred             CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC-----CceEeeccCCCCc
Confidence            58899999999999997                                 446799999973     3332222  2466


Q ss_pred             ccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEeeeccCCCcccEEEEEee--eccc---cEEeEEEeecCCCcEEEE
Q 026295           57 GAILKVVWVPPEFGDAVACICSDG-----SLLLWEEIVEDAQPLQWKLCKSFE--STST---QVLDVQFGVSSTSLKLVA  126 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~~~~l~~  126 (240)
                      ..+..++|+|+  |+.|++++.++     .|.+||+.++       +....+.  ....   .+..+.|+|..+|.++++
T Consensus       258 ~~~~~~~~spd--g~~l~~~~~~~~~~~~~v~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~  328 (706)
T 2z3z_A          258 KFLTNLSWSPD--ENILYVAEVNRAQNECKVNAYDAETG-------RFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ  328 (706)
T ss_dssp             CEEEEEEECTT--SSEEEEEEECTTSCEEEEEEEETTTC-------CEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred             eeEeeEEEECC--CCEEEEEEeCCCCCeeEEEEEECCCC-------ceeeEEEEccCCCeECccCCceeecCCCCEEEEE
Confidence            78999999999  99998887775     8999998654       2222222  1111   246789976336778899


Q ss_pred             EeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC--eEEEE
Q 026295          127 AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN--SSKVW  204 (240)
Q Consensus       127 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~--~i~iw  204 (240)
                      ++.|+.+++|.+...     ......+..+...+.         ..+.|+|++.     .|+.++.++    +  .+.||
T Consensus       329 ~~~~g~~~l~~~~~~-----~~~~~~l~~~~~~v~---------~~~~~spdg~-----~l~~~~~~~----~~~~~~l~  385 (706)
T 2z3z_A          329 SRRDGWNHLYLYDTT-----GRLIRQVTKGEWEVT---------NFAGFDPKGT-----RLYFESTEA----SPLERHFY  385 (706)
T ss_dssp             ECTTSSCEEEEEETT-----SCEEEECCCSSSCEE---------EEEEECTTSS-----EEEEEESSS----CTTCBEEE
T ss_pred             EccCCccEEEEEECC-----CCEEEecCCCCeEEE---------eeeEEcCCCC-----EEEEEecCC----CCceEEEE
Confidence            999999999988621     233444444433333         1378999987     566665553    4  35555


Q ss_pred             EeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          205 EFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .++.....   ...+.    |...+.+++|+||+.
T Consensus       386 ~~d~~~~~---~~~l~----~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          386 CIDIKGGK---TKDLT----PESGMHRTQLSPDGS  413 (706)
T ss_dssp             EEETTCCC---CEESC----CSSSEEEEEECTTSS
T ss_pred             EEEcCCCC---ceecc----CCCceEEEEECCCCC
Confidence            55432222   12222    455799999999974

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.70  E-value=3.8e-14  Score=111.42  Aligned_cols=204  Identities=10%  Similarity=0.015  Sum_probs=127.0

Q ss_pred             cccceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeE
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTD----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSL   82 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v   82 (240)
                      +......++|+|+|++|++++.+    +.|.+|++.... +..+.+.....+......+++  +  ++++++++ .++.|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-g~~~~~~~~~~~~~~p~~~~~--d--g~~l~~~~~~~~~v  122 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-GTLHLLNTQKTMGADPCYLTT--N--GKNIVTANYSGGSI  122 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-TEEEEEEEEECSSSCEEEEEE--C--SSEEEEEETTTTEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-CcEEEeeEeccCCCCcEEEEE--C--CCEEEEEECCCCEE
Confidence            44567789999999999999886    799999986431 134555555555566778888  5  77666665 57899


Q ss_pred             EEEEeeeccCCCcccEEEEEeee--------ccccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCccccc--c-eeEE
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES--------TSTQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILK--N-WQLQ  150 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~--~-~~~~  150 (240)
                      .+|++...... ..........+        +...+.+++|+|  +|+++++++ .++.|.+|++.......  + ....
T Consensus       123 ~~~~~~~~g~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          123 TVFPIGQDGAL-LPASDVIEFKGSGPDKERQTMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             EEEEBCTTSCB-CSCSEEEECCCCCSCTTTCSSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             EEEEeCCCCcC-cccceeEEccCCCCCccccCCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence            99998643110 00011111111        123457899999  998666555 57899999987532100  0 0000


Q ss_pred             ---eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCC
Q 026295          151 ---AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSD  227 (240)
Q Consensus       151 ---~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~  227 (240)
                         ..+....         ......++|+|++.     +|+++...+    +.|.+|++.++.  ......+.....+..
T Consensus       200 ~~~~~~~~~~---------~~~~~~~~~spdg~-----~l~v~~~~~----~~v~v~~~~~g~--~~~~~~~~~~~~~~~  259 (361)
T 3scy_A          200 GTPEAFKVAP---------GSGPRHLIFNSDGK-----FAYLINEIG----GTVIAFRYADGM--LDEIQTVAADTVNAQ  259 (361)
T ss_dssp             EEEEEEECCT---------TCCEEEEEECTTSS-----EEEEEETTT----CEEEEEEEETTE--EEEEEEEESCSSCCC
T ss_pred             ccccceecCC---------CCCCeEEEEcCCCC-----EEEEEcCCC----CeEEEEEecCCc--eEEeEEEecCCCCCC
Confidence               1111110         11123899999987     677777433    999999998543  223333343334555


Q ss_pred             ceEEEEEecCCC
Q 026295          228 EVYAVAWALNIG  239 (240)
Q Consensus       228 ~v~~v~~sp~~~  239 (240)
                      ...+++|+||+.
T Consensus       260 ~~~~i~~spdg~  271 (361)
T 3scy_A          260 GSGDIHLSPDGK  271 (361)
T ss_dssp             CEEEEEECTTSS
T ss_pred             CcccEEECCCCC
Confidence            678999999984

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=8e-17  Score=137.76  Aligned_cols=194  Identities=8%  Similarity=0.038  Sum_probs=122.6

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCc---cEEEEEEcCCCCCCEEEEEec---------CC
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAG---AILKVVWVPPEFGDAVACICS---------DG   80 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~---------d~   80 (240)
                      ..++|+|+|+++++ +.|+.|++||+.     +++....+..|..   .+.+++|+|+  |++|++++.         ++
T Consensus        19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~SpD--g~~la~~~~~~~~~~~s~~~   90 (719)
T 1z68_A           19 FFPNWISGQEYLHQ-SADNNIVLYNIE-----TGQSYTILSNRTMKSVNASNYGLSPD--RQFVYLESDYSKLWRYSYTA   90 (719)
T ss_dssp             CCCEESSSSEEEEE-CTTSCEEEEESS-----SCCEEEEECHHHHHTTTCSEEEECTT--SSEEEEEEEEEECSSSCEEE
T ss_pred             CccEECCCCeEEEE-cCCCCEEEEEcC-----CCcEEEEEccccccccceeeEEECCC--CCeEEEEecCceeEEeecce
Confidence            37899999965555 468999999998     4445555554433   3899999999  999998876         68


Q ss_pred             eEEEEEeeeccCCCcccEEE--EEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-eccc
Q 026295           81 SLLLWEEIVEDAQPLQWKLC--KSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAI  157 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~  157 (240)
                      .|++||+..+       +.+  ..+   ...+..++|+|  +|+.|+.+. ++.|++|++.+.      +..... ..+.
T Consensus        91 ~i~~~d~~~g-------~~~~~~~l---~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g------~~~~l~~~~~~  151 (719)
T 1z68_A           91 TYYIYDLSNG-------EFVRGNEL---PRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGD------PPFQITFNGRE  151 (719)
T ss_dssp             EEEEEETTTT-------EECCSSCC---CSSBCCEEECS--STTCEEEEE-TTEEEEESSTTS------CCEECCCCCBT
T ss_pred             EEEEEECCCC-------ccccceec---CcccccceECC--CCCEEEEEE-CCeEEEEeCCCC------CcEEEecCCCc
Confidence            9999999765       331  122   24688899999  999898886 789999998763      221111 1111


Q ss_pred             ceee-cc------ccccceeeeEEEeCCCCCCCCceEEEEecCCCC-----------------------------CCCeE
Q 026295          158 DSVT-MF------RKASCISASISWNPQKGENQGSSFVLGFNSDTP-----------------------------QLNSS  201 (240)
Q Consensus       158 ~~v~-~~------~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~-----------------------------~~~~i  201 (240)
                      ..+. ..      .........++|+|++.     .|++++.|+..                             ....|
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-----~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l  226 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWSPNGK-----FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI  226 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEECTTSS-----EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred             CCeEcccccceeeeecccCcccEEECCCCC-----EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence            1000 00      00000112799999998     88888765210                             00177


Q ss_pred             EEEEeecCCCC-cceeEeeecCCCCCCceEEEEEecCC
Q 026295          202 KVWEFDEAHNR-WLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       202 ~iw~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ++||+.++... +..........+|...+..++||||+
T Consensus       227 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~  264 (719)
T 1z68_A          227 FIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE  264 (719)
T ss_dssp             EEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS
T ss_pred             EEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC
Confidence            88888765321 00000000112466689999999994

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.67  E-value=3e-15  Score=116.13  Aligned_cols=111  Identities=14%  Similarity=0.109  Sum_probs=84.4

Q ss_pred             ceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeee-c----CccEEEEEEcCCCCCCEEEEEe-------
Q 026295           11 GTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-H----AGAILKVVWVPPEFGDAVACIC-------   77 (240)
Q Consensus        11 ~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h----~~~v~~~~~~~~~~~~~l~s~~-------   77 (240)
                      .+..++|+|+|+++ +++..++.|.+||+.     +.+.+..+.. +    ...+..++|+|+  |++++++.       
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~l~~~~~~~~~~~  107 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLV-----TGETLGRIDLSTPEERVKSLFGAALSPD--GKTLAIYESPVRLEL  107 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETT-----TCCEEEEEECCBTTEEEECTTCEEECTT--SSEEEEEEEEEEECS
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECC-----CCCeEeeEEcCCcccccccccceEECCC--CCEEEEEeccccccc
Confidence            47889999999865 455567899999997     4444544442 1    225778999999  98888875       


Q ss_pred             -----cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           78 -----SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        78 -----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                           .++.|.+||+..+       +.+..+.. ...+..++|+|  ++.+|+++  ++.|.+||+.+
T Consensus       108 ~~~~~~~~~i~v~d~~~~-------~~~~~~~~-~~~~~~~~~s~--dg~~l~~~--~~~i~~~d~~~  163 (337)
T 1pby_B          108 THFEVQPTRVALYDAETL-------SRRKAFEA-PRQITMLAWAR--DGSKLYGL--GRDLHVMDPEA  163 (337)
T ss_dssp             SCEEECCCEEEEEETTTT-------EEEEEEEC-CSSCCCEEECT--TSSCEEEE--SSSEEEEETTT
T ss_pred             ccccccCceEEEEECCCC-------cEEEEEeC-CCCcceeEECC--CCCEEEEe--CCeEEEEECCC
Confidence                 5799999999765       56655554 35678899999  99877777  68899999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.66  E-value=4e-14  Score=111.69  Aligned_cols=192  Identities=13%  Similarity=0.042  Sum_probs=121.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCE--EEEEe-----------
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDA--VACIC-----------   77 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--l~s~~-----------   77 (240)
                      .+..++|+|+|++|++++.+ .|.+|++...+  ....+.....+ +.+..++|+|+  |++  ++++.           
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g--~~~~~~~~~~~-g~~~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPT--EIVHEASHPIG-GHPRANDADTN--TRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETT--EEEEEEEEECC-SSGGGGCTTSC--CEEEEEEECSSTTCCEEEEEE
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCC--CEEEeeEeecC-CCCccEEECCC--CCEEEEEEecCCcceecccee
Confidence            57789999999999999988 99999985211  22222222211 23556899999  884  44543           


Q ss_pred             --cCCeEEEEEeeeccCCCcccEEEEEee----eccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEec-CcccccceeE
Q 026295           78 --SDGSLLLWEEIVEDAQPLQWKLCKSFE----STSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELL-DPLILKNWQL  149 (240)
Q Consensus        78 --~d~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~-~~~~~~~~~~  149 (240)
                        .++.+.+|++....      +....+.    .+...+..++|+|  +|++++++.. ++.|.+|++. +.    +...
T Consensus       115 ~~~~g~v~v~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g----~~~~  182 (365)
T 1jof_A          115 YKFAGYGNVFSVSETG------KLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASG----EVEL  182 (365)
T ss_dssp             SSSCCEEEEEEECTTC------CEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTS----CEEE
T ss_pred             ecCCceEEEEccCCCC------cCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCC----CEEE
Confidence              68999999996321      2222222    2446789999999  9998877664 6799999997 31    1222


Q ss_pred             Eeeeec--ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce-eEeeecC----
Q 026295          150 QAEFQN--AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP-VAELALP----  222 (240)
Q Consensus       150 ~~~~~~--~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~-~~~~~~~----  222 (240)
                      ...+..  +...+          ..++|+|++.     +|+++...+    +.|.+|+++........ ...+...    
T Consensus       183 ~~~~~~~~~g~~p----------~~~~~spdg~-----~l~v~~~~~----~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          183 VGSVDAPDPGDHP----------RWVAMHPTGN-----YLYALMEAG----NRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             EEEEECSSTTCCE----------EEEEECTTSS-----EEEEEETTT----TEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             eeeEecCCCCCCC----------CEeEECCCCC-----EEEEEECCC----CeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            222221  11222          3899999997     777777643    89999998743222211 1112211    


Q ss_pred             CCCCC------ceEEEE-EecCCC
Q 026295          223 EDRSD------EVYAVA-WALNIG  239 (240)
Q Consensus       223 ~~h~~------~v~~v~-~sp~~~  239 (240)
                      .+|..      .+..++ |+||+.
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~  267 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGK  267 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSS
T ss_pred             CCcccccccccccccEEEECCCCC
Confidence            12333      588999 999974

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.66  E-value=2e-15  Score=134.09  Aligned_cols=157  Identities=9%  Similarity=0.028  Sum_probs=121.7

Q ss_pred             hccccc-ceEEEEECCCCCEEEEEeCCCcEE-EEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            5 VATLDK-GTTSSSWNYCGQRLATGSTDGTLS-IFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         5 ~~~h~~-~v~~~~~s~~~~~l~~~~~d~~i~-iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +..|.+ .+..++|+ +|+.|+.++.+..+. +|++...     +.. .+..|...+..++|+|+  |++|++++.++.|
T Consensus       332 ~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~-----~~~-~l~~~~~~~~~~~~SpD--G~~la~~~~~~~v  402 (1045)
T 1k32_A          332 VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG-----KAE-KFEENLGNVFAMGVDRN--GKFAVVANDRFEI  402 (1045)
T ss_dssp             CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC-----CEE-ECCCCCCSEEEEEECTT--SSEEEEEETTSEE
T ss_pred             ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC-----Cce-EecCCccceeeeEECCC--CCEEEEECCCCeE
Confidence            445666 88999999 999999999888888 8898732     222 33377788999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC----------cEEEEEecCcccccceeEEee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG----------HVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----------~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      ++||+.++       +.......+...+..++|+|  +|++|++++.++          .|++||+.+      .+ ...
T Consensus       403 ~~~d~~tg-------~~~~~~~~~~~~v~~~~~Sp--DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~------g~-~~~  466 (1045)
T 1k32_A          403 MTVDLETG-------KPTVIERSREAMITDFTISD--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RK-IFA  466 (1045)
T ss_dssp             EEEETTTC-------CEEEEEECSSSCCCCEEECT--TSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TE-EEE
T ss_pred             EEEECCCC-------ceEEeccCCCCCccceEECC--CCCeEEEEecCccccccCCCCCeEEEEECCC------Cc-EEE
Confidence            99999765       55556667778889999999  999998887654          899999976      33 334


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      +..+...+.          .+.|+|++.     +|++++.+     +...+|+.
T Consensus       467 l~~~~~~~~----------~~~~spdG~-----~l~~~s~~-----~~~~~~~~  500 (1045)
T 1k32_A          467 ATTENSHDY----------APAFDADSK-----NLYYLSYR-----SLDPSPDR  500 (1045)
T ss_dssp             CSCSSSBEE----------EEEECTTSC-----EEEEEESC-----CCCCEECS
T ss_pred             eeCCCcccC----------CceEcCCCC-----EEEEEecc-----cCCcCcch
Confidence            444433333          789999997     78888876     66666653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.65  E-value=5.9e-16  Score=132.41  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=73.5

Q ss_pred             eEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCCCCcEEEE--eEeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295           12 TTSSSWNYCGQRLATGST---------DGTLSIFDSPDPSSSSFTCN--LKTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +.+++|||||++|+.++.         ++.|++||+.     +.+.+  ..+   ...+..++|+|+  |+.|+.+. ++
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~-----~g~~~~~~~l---~~~~~~~~~SPD--G~~la~~~-~~  130 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS-----NGEFVRGNEL---PRPIQYLCWSPV--GSKLAYVY-QN  130 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-----TTEECCSSCC---CSSBCCEEECSS--TTCEEEEE-TT
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC-----CCccccceec---CcccccceECCC--CCEEEEEE-CC
Confidence            889999999999999876         7899999998     33432  222   256889999999  99998875 78


Q ss_pred             eEEEEEeeeccCCCcccEEEEEe-eeccccE-----------------EeEEEeecCCCcEEEEEeCC
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSF-ESTSTQV-----------------LDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~v-----------------~~~~~~~~~~~~~l~~~~~d  130 (240)
                      .|++|++..+       +..+.. .++...+                 ..++|+|  +|++|++++.|
T Consensus       131 ~i~~~~~~~g-------~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d  189 (719)
T 1z68_A          131 NIYLKQRPGD-------PPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFN  189 (719)
T ss_dssp             EEEEESSTTS-------CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEE
T ss_pred             eEEEEeCCCC-------CcEEEecCCCcCCeEcccccceeeeecccCcccEEECC--CCCEEEEEEEC
Confidence            9999998765       222211 1221212                 4899999  99999998865

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.64  E-value=2.1e-15  Score=129.53  Aligned_cols=111  Identities=13%  Similarity=0.059  Sum_probs=86.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCcc-----EEEEEEcCCCCCCEEEEEecC-----
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGA-----ILKVVWVPPEFGDAVACICSD-----   79 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~~~l~s~~~d-----   79 (240)
                      .....++|+|+|++|+++  |+.|++||+.     +.++...+.+|...     ..++.|||+  |++|+.++.+     
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Spd--g~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAE-----YGNSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWR   87 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETT-----TCCEEEEECTTTTTTCCSCCCEEEECTT--SSEEEEEEEEEECSS
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECC-----CCceEEEEechhhhhhcccccceEECCC--CCEEEEEECCeeeEE
Confidence            346789999999999886  8999999998     44455556665532     245889999  9999988776     


Q ss_pred             ----CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           80 ----GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        80 ----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                          +.+.+||+.++       +. ..+..+...+...+|||  +|+.|+.+. ++.|.+|++.+
T Consensus        88 ~~~~~~~~~~d~~~~-------~~-~~l~~~~~~~~~~~~SP--dG~~la~~~-~~~i~~~~~~~  141 (740)
T 4a5s_A           88 HSYTASYDIYDLNKR-------QL-ITEERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPN  141 (740)
T ss_dssp             SCEEEEEEEEETTTT-------EE-CCSSCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTT
T ss_pred             EccceEEEEEECCCC-------cE-EEcccCCCcceeeEECC--CCCEEEEEE-CCeEEEEECCC
Confidence                55679999775       43 34555667899999999  999998885 68899999876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=2.7e-14  Score=110.74  Aligned_cols=159  Identities=9%  Similarity=0.072  Sum_probs=111.3

Q ss_pred             ceEEEEECCCCCEEEEEe------------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295           11 GTTSSSWNYCGQRLATGS------------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      .+..++|+|+|++|+++.            .++.|.+||+.     +.+.+..+.. ...+..+.|+|+  +++++++  
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-----~~~~~~~~~~-~~~~~~~~~s~d--g~~l~~~--  152 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-----TLSRRKAFEA-PRQITMLAWARD--GSKLYGL--  152 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-----TTEEEEEEEC-CSSCCCEEECTT--SSCEEEE--
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECC-----CCcEEEEEeC-CCCcceeEECCC--CCEEEEe--
Confidence            677899999999999886            57999999997     4455555554 456788999999  9878777  


Q ss_pred             CCeEEEEEeeeccCC----------CcccE-------------------------------------EEEE---------
Q 026295           79 DGSLLLWEEIVEDAQ----------PLQWK-------------------------------------LCKS---------  102 (240)
Q Consensus        79 d~~v~iwd~~~~~~~----------~~~~~-------------------------------------~~~~---------  102 (240)
                      ++.|.+||+..+...          ...|.                                     .+..         
T Consensus       153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  232 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA  232 (337)
T ss_dssp             SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred             CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence            688999997643110          00000                                     0011         


Q ss_pred             ---eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          103 ---FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       103 ---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                         +..+...+..++|+|  ++.+++++  ++.|.+||+.+      .+....+... ..+.          +++|+|++
T Consensus       233 ~~~~~~~~~~~~~~~~s~--dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~~-~~~~----------~~~~s~dg  291 (337)
T 1pby_B          233 MREVRIMDVFYFSTAVNP--AKTRAFGA--YNVLESFDLEK------NASIKRVPLP-HSYY----------SVNVSTDG  291 (337)
T ss_dssp             EEEEEECSSCEEEEEECT--TSSEEEEE--ESEEEEEETTT------TEEEEEEECS-SCCC----------EEEECTTS
T ss_pred             EeecCCCCCceeeEEECC--CCCEEEEe--CCeEEEEECCC------CcCcceecCC-Ccee----------eEEECCCC
Confidence               111223455689998  99988877  68999999876      4544444322 1222          88999998


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .     +|++++.+     +.|++||+.+.+
T Consensus       292 ~-----~l~~~~~~-----~~i~v~d~~~~~  312 (337)
T 1pby_B          292 S-----TVWLGGAL-----GDLAAYDAETLE  312 (337)
T ss_dssp             C-----EEEEESBS-----SEEEEEETTTCC
T ss_pred             C-----EEEEEcCC-----CcEEEEECcCCc
Confidence            7     78888777     999999987754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.61  E-value=2.9e-14  Score=111.15  Aligned_cols=113  Identities=12%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeec------CccEEEEEEcCCCCCCEEEEEecC----
Q 026295           11 GTTSSSWNYCGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVH------AGAILKVVWVPPEFGDAVACICSD----   79 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~~~d----   79 (240)
                      .+..++|+|+|++++ +...++.|.+||+.     +.+.+..+...      ...+..++|+|+  |+++++++.+    
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-----t~~~~~~~~~~~~~~~~~~~~~~~~~spd--g~~l~~~~~~~~~~  116 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-----TCKNTFHANLSSVPGEVGRSMYSFAISPD--GKEVYATVNPTQRL  116 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETT-----TTEEEEEEESCCSTTEEEECSSCEEECTT--SSEEEEEEEEEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCC-----CCcEEEEEEcccccccccccccceEECCC--CCEEEEEccccccc
Confidence            578899999998654 55578999999997     44555555432      223788999999  9999888865    


Q ss_pred             --------CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           80 --------GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        80 --------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                              +.|.+||+..+..    .+.+..+..+ ..+.+++|+|  ++. +++++  +.|.+||+.+
T Consensus       117 ~~~~~~~~~~i~~~d~~~~~~----~~~~~~~~~~-~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~  175 (349)
T 1jmx_B          117 NDHYVVKPPRLEVFSTADGLE----AKPVRTFPMP-RQVYLMRAAD--DGS-LYVAG--PDIYKMDVKT  175 (349)
T ss_dssp             SSCEEECCCEEEEEEGGGGGG----BCCSEEEECC-SSCCCEEECT--TSC-EEEES--SSEEEECTTT
T ss_pred             ccccccCCCeEEEEECCCccc----cceeeeccCC-CcccceeECC--CCc-EEEcc--CcEEEEeCCC
Confidence                    8999999876311    0223333333 4578899999  888 55554  3499999876

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.59  E-value=1.5e-12  Score=102.62  Aligned_cols=171  Identities=8%  Similarity=0.011  Sum_probs=111.3

Q ss_pred             cccceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEec-CCeEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICS-DGSLL   83 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~   83 (240)
                      +...+.+++|+|+|++|+++.. ++.|++|++...+  ....+..+.  .|...+..++|+|+  |+++++++. ++.|.
T Consensus       143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~~g~~p~~~~~spd--g~~l~v~~~~~~~v~  218 (365)
T 1jof_A          143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASG--EVELVGSVDAPDPGDHPRWVAMHPT--GNYLYALMEAGNRIC  218 (365)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTS--CEEEEEEEECSSTTCCEEEEEECTT--SSEEEEEETTTTEEE
T ss_pred             CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCC--CEEEeeeEecCCCCCCCCEeEECCC--CCEEEEEECCCCeEE
Confidence            3457889999999998887764 6799999997211  333344443  23567899999999  998887765 68999


Q ss_pred             EEEeeeccCCCcc--cEEEEEeee----ccc------cEEeEE-EeecCCCcEEEEEeCCC------cEEEEEecCcccc
Q 026295           84 LWEEIVEDAQPLQ--WKLCKSFES----TST------QVLDVQ-FGVSSTSLKLVAAYSDG------HVKVYELLDPLIL  144 (240)
Q Consensus        84 iwd~~~~~~~~~~--~~~~~~~~~----~~~------~v~~~~-~~~~~~~~~l~~~~~dg------~v~iw~~~~~~~~  144 (240)
                      +|++...++. ..  ...+..+..    +..      .+..++ |+|  +|++|++++.+.      +|.+|++...   
T Consensus       219 v~~~~~~~g~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp--dG~~l~v~~~~~~~~~~~~i~v~~~~~~---  292 (365)
T 1jof_A          219 EYVIDPATHM-PVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF--SGKYMFASSRANKFELQGYIAGFKLRDC---  292 (365)
T ss_dssp             EEEECTTTCC-EEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT--TSSEEEEEEEESSTTSCCEEEEEEECTT---
T ss_pred             EEEEeCCCCc-EEEccceEEcCCCCcCCcccccccccccccEEEECC--CCCEEEEECCCCCCCCCCeEEEEEECCC---
Confidence            9987532210 00  011112211    111      578899 999  999887766432      8999999631   


Q ss_pred             cceeEEe---eeecccceeeccccccceeeeEEEeC---CCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          145 KNWQLQA---EFQNAIDSVTMFRKASCISASISWNP---QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       145 ~~~~~~~---~~~~~~~~v~~~~~~~~~~~~v~~~p---~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                        +++..   .+..+.....          .++|+|   ++.     +|+++..++    +.|.||+++..
T Consensus       293 --g~~~~~~~~~~~~~~~~~----------~~a~sp~~~dg~-----~l~v~~~~~----~~v~v~~~~~~  342 (365)
T 1jof_A          293 --GSIEKQLFLSPTPTSGGH----------SNAVSPCPWSDE-----WMAITDDQE----GWLEIYRWKDE  342 (365)
T ss_dssp             --SCEEEEEEEEECSSCCTT----------CCCEEECTTCTT-----EEEEECSSS----CEEEEEEEETT
T ss_pred             --CCEEEeeeeeecCCCCcc----------cceecCCCcCCC-----EEEEEEcCC----CeEEEEEEchh
Confidence              22221   1111111122          788999   676     788887654    89999999875

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.59  E-value=1.6e-13  Score=108.79  Aligned_cols=191  Identities=10%  Similarity=0.057  Sum_probs=118.7

Q ss_pred             hcccccceEE-----EEECCCCCEEEEEeC-CCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE
Q 026295            5 VATLDKGTTS-----SSWNYCGQRLATGST-DGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus         5 ~~~h~~~v~~-----~~~s~~~~~l~~~~~-d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      +..|......     .+|+|||++|+.++. ++.  |.+||+.     +.+......++...+..+.|+|+  |+.|+.+
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~-----~g~~~~lt~~~~~~~~~~~~spd--g~~l~~~   98 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLN-----TQVATQLTEGRGDNTFGGFLSPD--DDALFYV   98 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETT-----TCEEEECCCSSCBCSSSCEECTT--SSEEEEE
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCC-----CCceEEeeeCCCCCccceEEcCC--CCEEEEE
Confidence            3444444444     789999999999887 664  7778887     44555555566656667889999  9999999


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEE--eecCCCcEEEEEe----------------------CCCc
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQF--GVSSTSLKLVAAY----------------------SDGH  132 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~l~~~~----------------------~dg~  132 (240)
                      +.++.|.+||+..+       +....+..+...+....|  +|  ++.+++...                      .+..
T Consensus        99 ~~~~~l~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           99 KDGRNLMRVDLATL-------EENVVYQVPAEWVGYGTWVANS--DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             ETTTEEEEEETTTC-------CEEEEEECCTTEEEEEEEEECT--TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             eCCCeEEEEECCCC-------cceeeeechhhcccccceeECC--CCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            98999999999776       444444444444544444  56  888776432                      3467


Q ss_pred             EEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeC-CCCCCCCceEEEEecCCC-CCCCeEEEEEeecCC
Q 026295          133 VKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP-QKGENQGSSFVLGFNSDT-PQLNSSKVWEFDEAH  210 (240)
Q Consensus       133 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~-~~~~~i~iw~~~~~~  210 (240)
                      |.+||+.+      .+.. .+..+...+.          .+.|+| ++.     .|+....+.. .....|.+++.....
T Consensus       170 l~~~d~~~------g~~~-~l~~~~~~~~----------~~~~sp~dg~-----~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          170 LMRVDLKT------GEST-VILQENQWLG----------HPIYRPYDDS-----TVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             EEEEETTT------CCEE-EEEEESSCEE----------EEEEETTEEE-----EEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             EEEEECCC------CceE-EeecCCcccc----------ccEECCCCCC-----EEEEEEecCCCCCcceEEEEeCCCCc
Confidence            88888876      2222 2222322333          789999 876     6766664300 000356666654432


Q ss_pred             CCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          211 NRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       211 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .     ..+.... ....+..++|+||+.
T Consensus       228 ~-----~~l~~~~-~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          228 M-----RKVKTHA-EGESCTHEFWVPDGS  250 (388)
T ss_dssp             C-----EESCCCC-TTEEEEEEEECTTSS
T ss_pred             e-----EEeeeCC-CCcccccceECCCCC
Confidence            1     1111111 112578899999985

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.57  E-value=4.8e-14  Score=117.83  Aligned_cols=174  Identities=11%  Similarity=0.025  Sum_probs=116.0

Q ss_pred             eEEEEECCCCC--EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC----CeEEEE
Q 026295           12 TTSSSWNYCGQ--RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD----GSLLLW   85 (240)
Q Consensus        12 v~~~~~s~~~~--~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~v~iw   85 (240)
                      +...+|+|+|+  .+++++. +.+.|||+.     +.+....... ..  .++.|+|+  |+++++++.+    ..|.+|
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~-~~~~l~d~~-----~g~~~~l~~~-~~--~~~~~spD--G~~la~~~~~~~~~~~i~~~  180 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATE-DRVALYALD-----GGGLRELARL-PG--FGFVSDIR--GDLIAGLGFFGGGRVSLFTS  180 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECS-SCEEEEEEE-----TTEEEEEEEE-SS--CEEEEEEE--TTEEEEEEEEETTEEEEEEE
T ss_pred             ceeeeeCCCCCeEEEEecCC-CCceEEEcc-----CCcEEEeecC-CC--ceEEECCC--CCEEEEEEEcCCCCeEEEEE
Confidence            44668888875  4444444 455599997     3343333333 23  78999999  9999988777    689999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC--cEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG--HVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      |+..+       + ...+..+...+..++|+|  +|++|+++..++  .|.+||+.+      .+.. .+..+...+...
T Consensus       181 d~~~g-------~-~~~l~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~i~~~d~~~------~~~~-~~~~~~~~~~~~  243 (582)
T 3o4h_A          181 NLSSG-------G-LRVFDSGEGSFSSASISP--GMKVTAGLETAREARLVTVDPRD------GSVE-DLELPSKDFSSY  243 (582)
T ss_dssp             ETTTC-------C-CEEECCSSCEEEEEEECT--TSCEEEEEECSSCEEEEEECTTT------CCEE-ECCCSCSHHHHH
T ss_pred             cCCCC-------C-ceEeecCCCccccceECC--CCCEEEEccCCCeeEEEEEcCCC------CcEE-EccCCCcChhhh
Confidence            98764       2 235566777889999999  999999888888  899999876      3333 333443333200


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .  .......+|+|++.     ++++++.+     +.++||++  ++.    .   ..   ....|.+++|+ |+
T Consensus       244 ~--~~~~~~~~~spdg~-----~~~~~~~~-----g~~~l~~~--g~~----~---~~---~~~~v~~~~~s-dg  293 (582)
T 3o4h_A          244 R--PTAITWLGYLPDGR-----LAVVARRE-----GRSAVFID--GER----V---EA---PQGNHGRVVLW-RG  293 (582)
T ss_dssp             C--CSEEEEEEECTTSC-----EEEEEEET-----TEEEEEET--TEE----E---CC---CSSEEEEEEEE-TT
T ss_pred             h--hccccceeEcCCCc-----EEEEEEcC-----CcEEEEEE--CCe----e---cc---CCCceEEEEec-CC
Confidence            0  00001223999985     88888888     99999998  221    1   11   22378899998 64

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.56  E-value=3.9e-14  Score=118.41  Aligned_cols=177  Identities=9%  Similarity=-0.014  Sum_probs=115.5

Q ss_pred             hcccc-cceEEEEECCCCCEEEEEeC---CCcEEEEeCCC--CCCCcEEEEeEeeecCccEEEEEEcCCCCCC--EEEEE
Q 026295            5 VATLD-KGTTSSSWNYCGQRLATGST---DGTLSIFDSPD--PSSSSFTCNLKTKVHAGAILKVVWVPPEFGD--AVACI   76 (240)
Q Consensus         5 ~~~h~-~~v~~~~~s~~~~~l~~~~~---d~~i~iw~~~~--~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~   76 (240)
                      +..|. ..+..++|+|+ +++++++.   +...+||.+..  .+  ....   +.. ...+...+|+|+  |+  .++++
T Consensus        59 lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g--~~~~---l~~-~~~~~~~~~s~d--g~~~~~~s~  129 (582)
T 3o4h_A           59 LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG--EEQR---LEA-VKPMRILSGVDT--GEAVVFTGA  129 (582)
T ss_dssp             CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT--CCEE---CTT-SCSBEEEEEEEC--SSCEEEEEE
T ss_pred             eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC--cccc---ccC-CCCceeeeeCCC--CCeEEEEec
Confidence            44455 57999999999 77877775   45567766543  22  1122   221 122345678887  54  44454


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecCcccccceeEEee
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      ..+ .+.+||+.++       +.......+ .  .+++|+|  +|+++++++.+    +.|.+||+.+      .+.. .
T Consensus       130 ~~~-~~~l~d~~~g-------~~~~l~~~~-~--~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~------g~~~-~  189 (582)
T 3o4h_A          130 TED-RVALYALDGG-------GLRELARLP-G--FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSS------GGLR-V  189 (582)
T ss_dssp             CSS-CEEEEEEETT-------EEEEEEEES-S--CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTT------CCCE-E
T ss_pred             CCC-CceEEEccCC-------cEEEeecCC-C--ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCC------CCce-E
Confidence            444 4559999765       443333333 2  7899999  99999988877    7899999876      2322 4


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC--eEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN--SSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      +..+...+.          .++|+|++.     .|+++..+     +  .|++||+.++...     .+.   +|...+.
T Consensus       190 l~~~~~~~~----------~~~~SpDG~-----~l~~~~~~-----~~~~i~~~d~~~~~~~-----~~~---~~~~~~~  241 (582)
T 3o4h_A          190 FDSGEGSFS----------SASISPGMK-----VTAGLETA-----REARLVTVDPRDGSVE-----DLE---LPSKDFS  241 (582)
T ss_dssp             ECCSSCEEE----------EEEECTTSC-----EEEEEECS-----SCEEEEEECTTTCCEE-----ECC---CSCSHHH
T ss_pred             eecCCCccc----------cceECCCCC-----EEEEccCC-----CeeEEEEEcCCCCcEE-----Ecc---CCCcChh
Confidence            444444444          899999998     78866666     7  8888988765422     222   4555777


Q ss_pred             EEE--------EecCC
Q 026295          231 AVA--------WALNI  238 (240)
Q Consensus       231 ~v~--------~sp~~  238 (240)
                      .++        |+||+
T Consensus       242 ~~~~~~~~~~~~spdg  257 (582)
T 3o4h_A          242 SYRPTAITWLGYLPDG  257 (582)
T ss_dssp             HHCCSEEEEEEECTTS
T ss_pred             hhhhccccceeEcCCC
Confidence            777        99997

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=1.2e-13  Score=108.81  Aligned_cols=175  Identities=12%  Similarity=0.053  Sum_probs=119.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC------CCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS------SSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .+..+++++...++++|+.+ .+.+|++....      ....+.... ..+.. |+.|+|  +  +.+|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d--~~~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--H--GDQVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--E--TTEEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--C--CCEEEEE-cCCcEEE
Confidence            58899999999999999997 56679864210      000111112 23556 999999  6  8888888 8899999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ||+...       ........+...+..+.+.+  .  .+++++.||.|.+||+.+.      ....    ....++   
T Consensus       111 ~dv~sl-------~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~------~~~~----~~~~Vs---  166 (388)
T 1xip_A          111 LDLEEL-------SEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTK------STKQ----LAQNVT---  166 (388)
T ss_dssp             EESSST-------TCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTC------CEEE----EEESEE---
T ss_pred             EEchhh-------hccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCC------cccc----ccCCce---
Confidence            998765       22223444556677777755  3  2888999999999999862      2221    122344   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEee------ecCCCCCCceEEEEEecCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAEL------ALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~------~~~~~h~~~v~~v~~sp~~  238 (240)
                             +++|+|.+       ++.|..|     |.+++|+........  ..++      ..+.+|...|.+|.|.++.
T Consensus       167 -------~v~WSpkG-------~~vg~~d-----g~i~~~~~~~~~~~~--k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~  225 (388)
T 1xip_A          167 -------SFDVTNSQ-------LAVLLKD-----RSFQSFAWRNGEMEK--QFEFSLPSELEELPVEEYSPLSVTILSPQ  225 (388)
T ss_dssp             -------EEEECSSE-------EEEEETT-----SCEEEEEEETTEEEE--EEEECCCHHHHTSCTTTSEEEEEEESSSS
T ss_pred             -------EEEEcCCc-------eEEEEcC-----CcEEEEcCCCccccc--cceecCCcccccccCCCeeEEEEEEecCC
Confidence                   99999998       5678888     999999887654210  1122      1112467799999999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.53  E-value=5.5e-13  Score=103.88  Aligned_cols=154  Identities=9%  Similarity=-0.013  Sum_probs=107.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeecc
Q 026295           14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVED   91 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~   91 (240)
                      .++++++++++++++.++.|++||..     +.+.+..+..+. ..+..++|+|+  +++++ +...++.|.+||+.++ 
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~-----~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v~~~~~~~i~~~d~~t~-   75 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVA-----SDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTC-   75 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETT-----TTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTT-
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECC-----CCcEEEEEecCCCCCCceeEECCC--CCEEEEEeCCCCcEEEEeCCCC-
Confidence            45778889999999999999999998     556666666433 25789999999  87554 5556889999998765 


Q ss_pred             CCCcccEEEEEeeec------cccEEeEEEeecCCCcEEEEEeCC------------CcEEEEEecCcccccceeEEeee
Q 026295           92 AQPLQWKLCKSFEST------STQVLDVQFGVSSTSLKLVAAYSD------------GHVKVYELLDPLILKNWQLQAEF  153 (240)
Q Consensus        92 ~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~d------------g~v~iw~~~~~~~~~~~~~~~~~  153 (240)
                            +....+...      ...+..++|+|  +|+++++++.+            +.|.+||+.+....   .....+
T Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~  144 (349)
T 1jmx_B           76 ------KNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA---KPVRTF  144 (349)
T ss_dssp             ------EEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB---CCSEEE
T ss_pred             ------cEEEEEEcccccccccccccceEECC--CCCEEEEEcccccccccccccCCCeEEEEECCCcccc---ceeeec
Confidence                  555555432      23378899999  99989888865            89999999763211   111112


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      ..+ ..+.          +++|+|++.     +++ ++       +.|++||..++.
T Consensus       145 ~~~-~~~~----------~~~~s~dg~-----l~~-~~-------~~i~~~d~~~~~  177 (349)
T 1jmx_B          145 PMP-RQVY----------LMRAADDGS-----LYV-AG-------PDIYKMDVKTGK  177 (349)
T ss_dssp             ECC-SSCC----------CEEECTTSC-----EEE-ES-------SSEEEECTTTCC
T ss_pred             cCC-Cccc----------ceeECCCCc-----EEE-cc-------CcEEEEeCCCCc
Confidence            111 1222          788999985     444 32       569999986643

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.52  E-value=4.5e-13  Score=115.06  Aligned_cols=108  Identities=14%  Similarity=0.117  Sum_probs=77.0

Q ss_pred             EEEEECCCCCEEEEEeCC---------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295           13 TSSSWNYCGQRLATGSTD---------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d---------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ..++|||||++|+.++.+         +.+.+||+.     +.+. ..+..|.+.+...+|||+  |+.|+.+ .++.|.
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-----~~~~-~~l~~~~~~~~~~~~SPd--G~~la~~-~~~~i~  135 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-----KRQL-ITEERIPNNTQWVTWSPV--GHKLAYV-WNNDIY  135 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-----TTEE-CCSSCCCTTEEEEEECSS--TTCEEEE-ETTEEE
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-----CCcE-EEcccCCCcceeeEECCC--CCEEEEE-ECCeEE
Confidence            458899999999999876         556799998     4343 345567788999999999  9999887 478999


Q ss_pred             EEEeeeccCCCcccEEEE-Eeeeccc-----------------cEEeEEEeecCCCcEEEEEeCCCc-EEEEEe
Q 026295           84 LWEEIVEDAQPLQWKLCK-SFESTST-----------------QVLDVQFGVSSTSLKLVAAYSDGH-VKVYEL  138 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~-~~~~~~~-----------------~v~~~~~~~~~~~~~l~~~~~dg~-v~iw~~  138 (240)
                      +|++..+       ...+ +..++..                 ....+.|||  +|++|+..+.|.+ |.+|++
T Consensus       136 ~~~~~~~-------~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~  200 (740)
T 4a5s_A          136 VKIEPNL-------PSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEY  200 (740)
T ss_dssp             EESSTTS-------CCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEE
T ss_pred             EEECCCC-------ceEEEcCCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEE
Confidence            9998765       2111 1112211                 123589999  9999998875443 555554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=1.3e-11  Score=95.90  Aligned_cols=192  Identities=9%  Similarity=0.021  Sum_probs=123.1

Q ss_pred             cceEEEEECCCCCEEEEEeCC------------------------CcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTD------------------------GTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVW   64 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d------------------------~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~   64 (240)
                      +.+.+++++++|+++++...+                        +.|.+||..     +++.+..+. ++-.....+++
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~-----~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPN-----NAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTT-----TCCEEEEECTTTCSSEEEEEE
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECC-----CCeEEeccCCCccCCceEEEE
Confidence            579999999999999888877                        479999987     334444443 34457889999


Q ss_pred             cCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee---------eccccEEeEEEeecCCCcEEEEEe-CCCcEE
Q 026295           65 VPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE---------STSTQVLDVQFGVSSTSLKLVAAY-SDGHVK  134 (240)
Q Consensus        65 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~l~~~~-~dg~v~  134 (240)
                      +++  |+++++...++.|++|+.....      ..+..+.         .+-.....++++|. ++.++++.+ .++.|+
T Consensus        99 d~~--g~l~v~d~~~~~v~~~~~~g~~------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           99 DTD--GNYWVTDVALHQVFKLDPHSKE------GPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             CTT--SCEEEEETTTTEEEEECTTCSS------CCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEE
T ss_pred             CCC--CCEEEEECCCCEEEEEeCCCCe------EEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEE
Confidence            998  9988888888999999975421      1333331         23346789999762 456666665 689999


Q ss_pred             EEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcc
Q 026295          135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWL  214 (240)
Q Consensus       135 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~  214 (240)
                      +|+..       +.....+........+..........++++|++.    .++++...+     +.|++|+..++.    
T Consensus       170 ~~~~~-------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g----~l~v~d~~~-----~~I~~~~~~~G~----  229 (329)
T 3fvz_A          170 QFSPS-------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD----QLCVADREN-----GRIQCFKTDTKE----  229 (329)
T ss_dssp             EECTT-------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTT----EEEEEETTT-----TEEEEEETTTCC----
T ss_pred             EEcCC-------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC----EEEEEECCC-----CEEEEEECCCCc----
Confidence            99943       3344333221110000001122234899999843    155555555     899999987543    


Q ss_pred             eeEeeecCCCCCCceEEEEEec
Q 026295          215 PVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       215 ~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      ....+.. ..+...+++++|+|
T Consensus       230 ~~~~~~~-~~~~~~~~~~~~~p  250 (329)
T 3fvz_A          230 FVREIKH-ASFGRNVFAISYIP  250 (329)
T ss_dssp             EEEEECC-TTTTTCEEEEEEET
T ss_pred             EEEEEec-cccCCCcceeeecC
Confidence            2223321 23556889999999

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.47  E-value=7.9e-12  Score=97.17  Aligned_cols=187  Identities=12%  Similarity=0.040  Sum_probs=122.3

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe---------eecCccEEEEEEcC-CCCCCEEEEEe-c
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT---------KVHAGAILKVVWVP-PEFGDAVACIC-S   78 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---------~~h~~~v~~~~~~~-~~~~~~l~s~~-~   78 (240)
                      .....++++++|+++++...++.|++|+.....    ..+..+         ..+-.....|+++| +  +.++++.+ .
T Consensus        91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~----~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~--g~lyv~d~~~  164 (329)
T 3fvz_A           91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE----GPLLILGRSMQPGSDQNHFCQPTDVAVEPST--GAVFVSDGYC  164 (329)
T ss_dssp             SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS----CCSEEESBTTBCCCSTTCCSSEEEEEECTTT--CCEEEEECSS
T ss_pred             CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe----EEEEEecccCCCCCCccccCCCcEEEEeCCC--CeEEEEeCCC
Confidence            367889999999999988889999999986321    122333         23344688999999 6  88887776 6


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeec----------cccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecCcccccce
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFEST----------STQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLDPLILKNW  147 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~  147 (240)
                      ++.|++|+.. +       ..+..+...          -.....++++|  + +.++++...++.|++|+..+      +
T Consensus       165 ~~~I~~~~~~-g-------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~--~~g~l~v~d~~~~~I~~~~~~~------G  228 (329)
T 3fvz_A          165 NSRIVQFSPS-G-------KFVTQWGEESSGSSPRPGQFSVPHSLALVP--HLDQLCVADRENGRIQCFKTDT------K  228 (329)
T ss_dssp             CCEEEEECTT-S-------CEEEEECEECCSSSCCTTEESCEEEEEEET--TTTEEEEEETTTTEEEEEETTT------C
T ss_pred             CCeEEEEcCC-C-------CEEEEeccCCCCCCCCCcccCCCcEEEEEC--CCCEEEEEECCCCEEEEEECCC------C
Confidence            8999999953 2       444444322          23378999998  7 77777778889999999875      4


Q ss_pred             eEEeeeecc--cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCC--CCCCeEEEEEeecCCCCcceeEeeecCC
Q 026295          148 QLQAEFQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT--PQLNSSKVWEFDEAHNRWLPVAELALPE  223 (240)
Q Consensus       148 ~~~~~~~~~--~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~--~~~~~i~iw~~~~~~~~~~~~~~~~~~~  223 (240)
                      +.+..+...  ...+          ..++|+| +.     ++++.+..-.  .....|++|++.++.    ....+....
T Consensus       229 ~~~~~~~~~~~~~~~----------~~~~~~p-g~-----~~~~~g~~~v~~~~~~~v~~~~~~~g~----~~~~~~~~~  288 (329)
T 3fvz_A          229 EFVREIKHASFGRNV----------FAISYIP-GF-----LFAVNGKPYFGDQEPVQGFVMNFSSGE----IIDVFKPVR  288 (329)
T ss_dssp             CEEEEECCTTTTTCE----------EEEEEET-TE-----EEEEECCCCTTCSCCCCEEEEETTTCC----EEEEECCSS
T ss_pred             cEEEEEeccccCCCc----------ceeeecC-CE-----EEEeCCCEEeccCCCcEEEEEEcCCCe----EEEEEcCCC
Confidence            555554321  1222          2788888 32     2222221100  000589999987654    223332223


Q ss_pred             CCCCceEEEEEecCC
Q 026295          224 DRSDEVYAVAWALNI  238 (240)
Q Consensus       224 ~h~~~v~~v~~sp~~  238 (240)
                      ++...+..|+++||+
T Consensus       289 ~~~~~p~~ia~~~dG  303 (329)
T 3fvz_A          289 KHFDMPHDIVASEDG  303 (329)
T ss_dssp             SCCSSEEEEEECTTS
T ss_pred             CccCCeeEEEECCCC
Confidence            466689999999987

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.47  E-value=9.5e-12  Score=98.00  Aligned_cols=69  Identities=10%  Similarity=0.044  Sum_probs=53.5

Q ss_pred             EEEECCCCCEEEEEeC----------CCcEEEEeCCCCCCCcEEEEeEeeec------CccEEEEEEcCCCCCCEEEEEe
Q 026295           14 SSSWNYCGQRLATGST----------DGTLSIFDSPDPSSSSFTCNLKTKVH------AGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~----------d~~i~iw~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      .++|+|+|++|+++..          ++.|.+||..     +.+.+..+...      ......+.++|+  |++|+++.
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~-----t~~~~~~i~~~~~~~~~g~~p~~i~~spd--g~~l~v~n  126 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDAD-----KLTFEKEISLPPKRVQGLNYDGLFRQTTD--GKFIVLQN  126 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETT-----TCCEEEEEEECTTBCCBCCCGGGEEECTT--SSEEEEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECc-----CCcEEEEEEcCccccccCCCcceEEECCC--CCEEEEEC
Confidence            7999999999999863          5789999987     55566665532      234678999999  99988876


Q ss_pred             c--CCeEEEEEeee
Q 026295           78 S--DGSLLLWEEIV   89 (240)
Q Consensus        78 ~--d~~v~iwd~~~   89 (240)
                      .  ++.|.+||+..
T Consensus       127 ~~~~~~v~v~d~~~  140 (361)
T 2oiz_A          127 ASPATSIGIVDVAK  140 (361)
T ss_dssp             ESSSEEEEEEETTT
T ss_pred             CCCCCeEEEEECCC
Confidence            4  57899999754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.43  E-value=9.7e-11  Score=90.87  Aligned_cols=190  Identities=11%  Similarity=0.051  Sum_probs=115.9

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC----Ce
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD----GS   81 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~   81 (240)
                      ..+...+.+++|+++|++++++..++.|.+||....     +.......+...+.+++|+++  +.++++...+    +.
T Consensus        41 ~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~-----~~~~~~~~~~~~~~~i~~~~d--g~l~v~~~~~~~~~~~  113 (333)
T 2dg1_A           41 SKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK-----EIKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGG  113 (333)
T ss_dssp             ESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-----CEEEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCE
T ss_pred             eccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-----cEEEEeeCCCCCcceEEECCC--CcEEEEeCCCCCCCce
Confidence            344556789999999998888888999999998732     332223245678999999998  8887777665    68


Q ss_pred             EEEEEeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeC------CCcEEEEEecCcccccceeEEeee
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYS------DGHVKVYELLDPLILKNWQLQAEF  153 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~iw~~~~~~~~~~~~~~~~~  153 (240)
                      |.+||...+       .....+.  .....+..++++|  ++.++++...      .+.|..++...      .+.. .+
T Consensus       114 i~~~d~~~~-------~~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~------~~~~-~~  177 (333)
T 2dg1_A          114 IFAATENGD-------NLQDIIEDLSTAYCIDDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDF------RTVT-PI  177 (333)
T ss_dssp             EEEECTTSC-------SCEEEECSSSSCCCEEEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTS------CCEE-EE
T ss_pred             EEEEeCCCC-------EEEEEEccCccCCcccceEECC--CCCEEEEeccccccCCCceEEEEeCCC------CEEE-Ee
Confidence            999997654       2111111  2345688999998  8886665543      23444444332      1111 11


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe-cCCCCCCCeEEEEEeecCCCCccee--EeeecCCCCCCceE
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF-NSDTPQLNSSKVWEFDEAHNRWLPV--AELALPEDRSDEVY  230 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~-~dd~~~~~~i~iw~~~~~~~~~~~~--~~~~~~~~h~~~v~  230 (240)
                      ......          ++.++|+|++.     .|.++. .+     +.|.+|++.+........  .......++ ..+.
T Consensus       178 ~~~~~~----------~~~i~~~~dg~-----~l~v~~~~~-----~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~  236 (333)
T 2dg1_A          178 IQNISV----------ANGIALSTDEK-----VLWVTETTA-----NRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPD  236 (333)
T ss_dssp             EEEESS----------EEEEEECTTSS-----EEEEEEGGG-----TEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEE
T ss_pred             ecCCCc----------ccceEECCCCC-----EEEEEeCCC-----CeEEEEEecCCCcCcccccceEEEecCCC-CCCC
Confidence            111111          23789999986     455544 45     899999986432211111  111111122 3678


Q ss_pred             EEEEecCCC
Q 026295          231 AVAWALNIG  239 (240)
Q Consensus       231 ~v~~sp~~~  239 (240)
                      .++++|++.
T Consensus       237 ~i~~d~~G~  245 (333)
T 2dg1_A          237 SCCIDSDDN  245 (333)
T ss_dssp             EEEEBTTCC
T ss_pred             ceEECCCCC
Confidence            899998863

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=6.3e-12  Score=99.13  Aligned_cols=140  Identities=11%  Similarity=0.083  Sum_probs=98.6

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..+.. |+.++|  ++++|+++ .++.|++||+..-.     .......|+..+.++.+.++  .  ++++..||.|.+|
T Consensus        85 ~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-----~~~~~~~~~~~v~~i~~~~p--~--~av~~~dG~L~v~  151 (388)
T 1xip_A           85 KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELS-----EFRTVTSFEKPVFQLKNVNN--T--LVILNSVNDLSAL  151 (388)
T ss_dssp             EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTT-----CEEEEEECSSCEEEEEECSS--E--EEEEETTSEEEEE
T ss_pred             eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhh-----ccCccceeecceeeEEecCC--C--EEEEECCCCEEEE
Confidence            34667 999999  99999999 88999999997432     23344567778999888765  3  8888999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE--Eeeeecccceeecc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL--QAEFQNAIDSVTMF  163 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~--~~~~~~~~~~v~~~  163 (240)
                      |+..+       ....    ....|++++|+|  +|  ++.+..||++++|+...      .++  ..++.... .+...
T Consensus       152 dl~~~-------~~~~----~~~~Vs~v~WSp--kG--~~vg~~dg~i~~~~~~~------~~~~~k~~I~~Pp-~~~~~  209 (388)
T 1xip_A          152 DLRTK-------STKQ----LAQNVTSFDVTN--SQ--LAVLLKDRSFQSFAWRN------GEMEKQFEFSLPS-ELEEL  209 (388)
T ss_dssp             ETTTC-------CEEE----EEESEEEEEECS--SE--EEEEETTSCEEEEEEET------TEEEEEEEECCCH-HHHTS
T ss_pred             EccCC-------cccc----ccCCceEEEEcC--Cc--eEEEEcCCcEEEEcCCC------ccccccceecCCc-ccccc
Confidence            99754       3322    346899999999  88  67899999999998875      232  33442111 00000


Q ss_pred             ccccceeeeEEEeCCCC
Q 026295          164 RKASCISASISWNPQKG  180 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~  180 (240)
                      ..+...+.+|+|.++..
T Consensus       210 ~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          210 PVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             CTTTSEEEEEEESSSSE
T ss_pred             cCCCeeEEEEEEecCCe
Confidence            00223445999999875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.42  E-value=3.4e-12  Score=108.11  Aligned_cols=155  Identities=12%  Similarity=0.059  Sum_probs=99.3

Q ss_pred             EEEEC--CCCCE-EEEEeC-CCcEEEEeCC--C-CCCCcEEEEeEeee-----cCccEEEEEEcCCCCCCEEEEEecC--
Q 026295           14 SSSWN--YCGQR-LATGST-DGTLSIFDSP--D-PSSSSFTCNLKTKV-----HAGAILKVVWVPPEFGDAVACICSD--   79 (240)
Q Consensus        14 ~~~~s--~~~~~-l~~~~~-d~~i~iw~~~--~-~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~d--   79 (240)
                      ..+|+  |||++ |+..+. +..|.++++.  . .   .   ...+..     |...+..++|+|+  |+.|++++.+  
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~---~---~~~l~~~~~~~~~~~~~~~~~spD--g~~l~~~~~~~~  152 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA---V---PRPLTPVSAVGGGLRWADPVLLPE--RGEVWCMAEEFT  152 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC---C---CEECSCCCCSTTCEEEEEEEEETT--TTEEEEEEEEEC
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC---C---CEeccCCccCCCCccccCcEECCC--CCEEEEEEeccc
Confidence            55555  99998 776554 4556666654  1 1   1   122333     5677889999999  9999988876  


Q ss_pred             --------CeEEEEEeee------ccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCC--------CcEEEE
Q 026295           80 --------GSLLLWEEIV------EDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSD--------GHVKVY  136 (240)
Q Consensus        80 --------~~v~iwd~~~------~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d--------g~v~iw  136 (240)
                              ..|.+||+..      +       .. ..+. .+...+..++|+|  +|++|+.++.+        ..|.+|
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~-------~~-~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~  222 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRS-------AV-RELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTA  222 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGG-------GS-EESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEE
T ss_pred             CCCCCCceeEEEEEECCCCccccCC-------ce-eEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEE
Confidence                    5788999865      3       22 2233 3446778899999  99999887755        379999


Q ss_pred             EecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          137 ELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      |+......  .+.......+...+.          .+.|+|++.     +++++..+     +..+||.++.
T Consensus       223 d~~~~g~~--~~~~~l~~~~~~~~~----------~~~~spdg~-----l~~~~~~~-----~~~~l~~~~~  272 (662)
T 3azo_A          223 RVTEDGRF--ADTRTLLGGPEEAIA----------QAEWAPDGS-----LIVATDRT-----GWWNLHRVDP  272 (662)
T ss_dssp             EECTTSCE--EEEEEEEEETTBCEE----------EEEECTTSC-----EEEEECTT-----SSCEEEEECT
T ss_pred             EECCCCcc--cccEEeCCCCCceEc----------ceEECCCCe-----EEEEECCC-----CCeEEEEEEC
Confidence            98731100  022222222233333          889999986     77777766     7556665543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.41  E-value=6.9e-11  Score=89.77  Aligned_cols=155  Identities=8%  Similarity=0.061  Sum_probs=109.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ..+..++++++|+++++...++.|.+|+...      +.+..+.  .+...+..++++++  +.++++...++.|.+|+.
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g------~~~~~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~  192 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQNG------NVLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNY  192 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTS------CEEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEET
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCCC------CEEEEeCCCCccCCcEEEEECCC--CCEEEEECCCCEEEEEcC
Confidence            4688999999999888888889999999752      2333333  34456899999998  888877777899999997


Q ss_pred             eeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCC-cEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           88 IVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDG-HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg-~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ..        ..+..+...  ...+..++++|  +|.++++...++ .|.+|+...       +.+..+..+...     
T Consensus       193 ~g--------~~~~~~~~~g~~~~p~~i~~d~--~G~l~v~~~~~~~~i~~~~~~g-------~~~~~~~~~~~~-----  250 (286)
T 1q7f_A          193 EG--------QYLRQIGGEGITNYPIGVGINS--NGEILIADNHNNFNLTIFTQDG-------QLISALESKVKH-----  250 (286)
T ss_dssp             TC--------CEEEEESCTTTSCSEEEEEECT--TCCEEEEECSSSCEEEEECTTS-------CEEEEEEESSCC-----
T ss_pred             CC--------CEEEEEccCCccCCCcEEEECC--CCCEEEEeCCCCEEEEEECCCC-------CEEEEEcccCCC-----
Confidence            43        444455432  25678999988  898777777775 999998542       334444332111     


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                         ..+..++++|++.     ++++ +.+     +.|++|++..
T Consensus       251 ---~~~~~i~~~~~g~-----l~vs-~~~-----~~v~v~~~~~  280 (286)
T 1q7f_A          251 ---AQCFDVALMDDGS-----VVLA-SKD-----YRLYIYRYVQ  280 (286)
T ss_dssp             ---SCEEEEEEETTTE-----EEEE-ETT-----TEEEEEECSC
T ss_pred             ---CcceeEEECCCCc-----EEEE-CCC-----CeEEEEEccc
Confidence               0123789999875     5555 566     9999999754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.40  E-value=4.5e-12  Score=107.41  Aligned_cols=199  Identities=11%  Similarity=-0.000  Sum_probs=120.8

Q ss_pred             hhcccccceEEEEECCCCCEEEEE--eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE---------EEEEc--CCCCC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATG--STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL---------KVVWV--PPEFG   70 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~--~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~---------~~~~~--~~~~~   70 (240)
                      .+..|...+..++|++++-+++..  +.++...||.....+     ....+..+...+.         ...|+  |+  |
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD--g   90 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-----AEESALPAPWNVRNRVFEYSGFPWAGVPRPA--G   90 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-----CEEESSCTTCCBCCCGGGTCCCCEEEECCSS--S
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-----CcceeCCCCccccccccccCCccceeeeecC--C
Confidence            366788899999999887777777  567889999863221     1333444554554         56666  88  8


Q ss_pred             CE-EEEEec-CCeEEEEEee--e-ccCCCcccEEEEEeee-----ccccEEeEEEeecCCCcEEEEEeCC----------
Q 026295           71 DA-VACICS-DGSLLLWEEI--V-EDAQPLQWKLCKSFES-----TSTQVLDVQFGVSSTSLKLVAAYSD----------  130 (240)
Q Consensus        71 ~~-l~s~~~-d~~v~iwd~~--~-~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d----------  130 (240)
                      +. |+.+.. +..|.++++.  . +       . ...+..     +...+..++|+|  +|+.|++++.+          
T Consensus        91 ~~~la~~~~~~~~l~~~~~~~~g~~-------~-~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           91 GPLLVFTHFGDQRLYAFEPDAPGGA-------V-PRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             SCEEEEEBTTTCCEEEECTTSTTCC-------C-CEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEE
T ss_pred             CeEEEEEECCCCeEEEEcCCCCCCC-------C-CEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCce
Confidence            87 666543 4455555553  1 2       2 122222     456788999999  99999988876          


Q ss_pred             CcEEEEEecCcccccceeEEeeee-cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCC---CCCeEEEEEe
Q 026295          131 GHVKVYELLDPLILKNWQLQAEFQ-NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTP---QLNSSKVWEF  206 (240)
Q Consensus       131 g~v~iw~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~---~~~~i~iw~~  206 (240)
                      ..|.+||+.+.......+ ...+. .+...+.          .++|+|++.     .|+.++.+...   ....|++|++
T Consensus       161 ~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~----------~~~~SpDG~-----~la~~~~~~~~~~~~~~~i~~~d~  224 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSA-VRELSDDAHRFVT----------GPRLSPDGR-----QAVWLAWDHPRMPWEGTELKTARV  224 (662)
T ss_dssp             EEEEEEETTSTTTTCGGG-SEESSCSCSSEEC----------CCEECTTSS-----EEEEEEECTTCCTTTCEEEEEEEE
T ss_pred             eEEEEEECCCCccccCCc-eeEEEecCCCccc----------CceECCCCC-----EEEEEECCCCCCCCCCcEEEEEEE
Confidence            578899987510000001 11222 2222233          789999997     78877754100   0037999998


Q ss_pred             e-cCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          207 D-EAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       207 ~-~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      . ++.  ......+..  +|...+..++|+||+.
T Consensus       225 ~~~g~--~~~~~~l~~--~~~~~~~~~~~spdg~  254 (662)
T 3azo_A          225 TEDGR--FADTRTLLG--GPEEAIAQAEWAPDGS  254 (662)
T ss_dssp             CTTSC--EEEEEEEEE--ETTBCEEEEEECTTSC
T ss_pred             CCCCc--ccccEEeCC--CCCceEcceEECCCCe
Confidence            7 341  111111211  2455899999999973

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.39  E-value=2.9e-10  Score=86.32  Aligned_cols=181  Identities=10%  Similarity=0.072  Sum_probs=119.2

Q ss_pred             ccceEEEEE-CCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            9 DKGTTSSSW-NYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         9 ~~~v~~~~~-s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ...+..+++ .++++++++... ++.|++|+...      +.+..+. .+...+..+++.++  |.++++...++.|.+|
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g------~~~~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~  147 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG------QFVRKFGATILQHPRGVTVDNK--GRIIVVECKVMRVIIF  147 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS------CEEEEECTTTCSCEEEEEECTT--SCEEEEETTTTEEEEE
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC------cEEEEecCccCCCceEEEEeCC--CCEEEEECCCCEEEEE
Confidence            346789999 577777766643 78999999542      3344443 23456889999998  8888877778899999


Q ss_pred             EeeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           86 EEIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      +...        +.+..+.  .+...+..++++|  ++.++++...++.|.+|+...       .....+....      
T Consensus       148 ~~~g--------~~~~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-------~~~~~~~~~g------  204 (286)
T 1q7f_A          148 DQNG--------NVLHKFGCSKHLEFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-------QYLRQIGGEG------  204 (286)
T ss_dssp             CTTS--------CEEEEEECTTTCSSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-------CEEEEESCTT------
T ss_pred             cCCC--------CEEEEeCCCCccCCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-------CEEEEEccCC------
Confidence            9643        4444443  2335688999998  898777777889999999753       3333332211      


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC-eEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN-SSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~-~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                        ....+..++++|++.     ++++...+     + .|.+|+... .    ....+.... ....+.+++|+|++
T Consensus       205 --~~~~p~~i~~d~~G~-----l~v~~~~~-----~~~i~~~~~~g-~----~~~~~~~~~-~~~~~~~i~~~~~g  262 (286)
T 1q7f_A          205 --ITNYPIGVGINSNGE-----ILIADNHN-----NFNLTIFTQDG-Q----LISALESKV-KHAQCFDVALMDDG  262 (286)
T ss_dssp             --TSCSEEEEEECTTCC-----EEEEECSS-----SCEEEEECTTS-C----EEEEEEESS-CCSCEEEEEEETTT
T ss_pred             --ccCCCcEEEECCCCC-----EEEEeCCC-----CEEEEEECCCC-C----EEEEEcccC-CCCcceeEEECCCC
Confidence              001123899999886     66666555     6 999998532 2    222232221 22247899999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.39  E-value=3.8e-11  Score=102.72  Aligned_cols=195  Identities=10%  Similarity=0.058  Sum_probs=115.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe---
Q 026295           10 KGTTSSSWNYCGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS---   81 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~---   81 (240)
                      ..+..++|||||++||.+..++     .|++||+.     +++.......+ ..+..++|+|+  |+.|+.+..++.   
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~-----tg~~~~~~~~~-~~~~~~~wspD--g~~l~~~~~~~~~~~  196 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-----GAKELPDVLER-VKFSCMAWTHD--GKGMFYNAYPQQDGK  196 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-----TTEEEEEEEEE-ECSCCEEECTT--SSEEEEEECCCCSSC
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECC-----CCCCCcccccC-cccceEEEEeC--CCEEEEEEECCcccc
Confidence            3578899999999999876543     89999998     33443322222 23678999999  999988887765   


Q ss_pred             -------------EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-----CCcEEEEEecCccc
Q 026295           82 -------------LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-----DGHVKVYELLDPLI  143 (240)
Q Consensus        82 -------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-----dg~v~iw~~~~~~~  143 (240)
                                   |.+|++.++..   .-..+.....+...+..+.|+|  +|++|+..+.     +..|.+||+.+...
T Consensus       197 ~~~~~~~~~~~~~v~~~~l~t~~~---~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~  271 (710)
T 2xdw_A          197 SDGTETSTNLHQKLYYHVLGTDQS---EDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESN  271 (710)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGG---GCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred             ccccccccCCCCEEEEEECCCCcc---cceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECccccc
Confidence                         99999865421   0012223233445678899999  9998887764     56789999864100


Q ss_pred             -ccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCC-CcceeEeeec
Q 026295          144 -LKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHN-RWLPVAELAL  221 (240)
Q Consensus       144 -~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~-~~~~~~~~~~  221 (240)
                       .........+..+....           ...|+|++.     .|+..+..+. ....|.+|++.+... .|..   +..
T Consensus       272 ~~~~~~~~~~l~~~~~~~-----------~~~~s~dg~-----~l~~~s~~~~-~~~~l~~~d~~~~~~~~~~~---l~~  331 (710)
T 2xdw_A          272 GITGILKWVKLIDNFEGE-----------YDYVTNEGT-----VFTFKTNRHS-PNYRLINIDFTDPEESKWKV---LVP  331 (710)
T ss_dssp             SSCSSCCCEEEECSSSSC-----------EEEEEEETT-----EEEEEECTTC-TTCEEEEEETTSCCGGGCEE---EEC
T ss_pred             ccCCccceEEeeCCCCcE-----------EEEEeccCC-----EEEEEECCCC-CCCEEEEEeCCCCCccccee---ccC
Confidence             00000122233332222           224788876     5655554310 014688888766432 2222   211


Q ss_pred             CCCCCCceEEEEEecCC
Q 026295          222 PEDRSDEVYAVAWALNI  238 (240)
Q Consensus       222 ~~~h~~~v~~v~~sp~~  238 (240)
                      +. ....+..++|+|++
T Consensus       332 ~~-~~~~~~~~~~~~~~  347 (710)
T 2xdw_A          332 EH-EKDVLEWVACVRSN  347 (710)
T ss_dssp             CC-SSCEEEEEEEETTT
T ss_pred             CC-CCCeEEEEEEEcCC
Confidence            11 11267889998653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.36  E-value=1.7e-10  Score=89.94  Aligned_cols=167  Identities=10%  Similarity=0.044  Sum_probs=103.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCC---------------------------CcEEEEeCCCCCCCcEEEEeEeeecCccE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTD---------------------------GTLSIFDSPDPSSSSFTCNLKTKVHAGAI   59 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d---------------------------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v   59 (240)
                      .+.. +..++|+|+|+.|+.++.+                           ..|.+|++..     .+.+..+.. . .+
T Consensus       102 ~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~-----~~~~~~l~~-~-~~  173 (347)
T 2gop_A          102 EAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES-----EEVIEEFEK-P-RF  173 (347)
T ss_dssp             EESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT-----TEEEEEEEE-E-TT
T ss_pred             cCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC-----CeEEeeecC-C-Cc
Confidence            3344 8899999999999888642                           5688899873     333233333 3 78


Q ss_pred             EEEEEcCCCCCCEEEEEecCC-------eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-
Q 026295           60 LKVVWVPPEFGDAVACICSDG-------SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-  131 (240)
Q Consensus        60 ~~~~~~~~~~~~~l~s~~~d~-------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-  131 (240)
                      ..+.|+|+  | +++++..+.       ...||.+..+       + ...+..+ ..+..+  +|  +|++|+.++.++ 
T Consensus       174 ~~~~~spd--g-~~~~~~~~~~~~~~~~~~~l~~~d~~-------~-~~~l~~~-~~~~~~--sp--dg~~l~~~~~~~~  237 (347)
T 2gop_A          174 SSGIWHRD--K-IVVNVPHREIIPQYFKFWDIYIWEDG-------K-EEKMFEK-VSFYAV--DS--DGERILLYGKPEK  237 (347)
T ss_dssp             CEEEEETT--E-EEEEEECCCSSCCSSCCEEEEEEETT-------E-EEEEEEE-ESEEEE--EE--CSSCEEEEECCSS
T ss_pred             ccccCCCC--e-EEEEEecccccccccccccEEEeCCC-------c-eEEeccC-cceeeE--CC--CCCEEEEEEcccc
Confidence            89999999  8 777776542       4566666522       2 2223323 444443  88  999888777543 


Q ss_pred             -------cEEEEEecCcccccceeEEeeeecccceeeccccccceeee-EEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295          132 -------HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISAS-ISWNPQKGENQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       132 -------~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                             .|.+||  +      .+.......+...+.          . +.|+ ++      ++++++.+     +.++|
T Consensus       238 ~~~~~~~~l~~~d--~------~~~~~l~~~~~~~~~----------~~~~~s-dg------~~~~~~~~-----~~~~l  287 (347)
T 2gop_A          238 KYMSEHNKLYIYD--G------KEVMGILDEVDRGVG----------QAKIKD-GK------VYFTLFEE-----GSVNL  287 (347)
T ss_dssp             SCCCSSCEEEEEC--S------SCEEESSTTCCSEEE----------EEEEET-TE------EEEEEEET-----TEEEE
T ss_pred             CCccccceEEEEC--C------CceEeccccCCcccC----------CccEEc-Cc------EEEEEecC-----CcEEE
Confidence                   566666  2      222222222222332          4 7887 53      68888888     99999


Q ss_pred             EEeecCCCCcceeEeeecCCCCCCceEEEEEec
Q 026295          204 WEFDEAHNRWLPVAELALPEDRSDEVYAVAWAL  236 (240)
Q Consensus       204 w~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp  236 (240)
                      | +.++.    ....+.    +...|.+++|+|
T Consensus       288 ~-~~~g~----~~~~~~----~~~~v~~~~~s~  311 (347)
T 2gop_A          288 Y-IWDGE----IKPIAK----GRHWIMGFDVDE  311 (347)
T ss_dssp             E-EESSS----EEEEEC----SSSEEEEEEESS
T ss_pred             E-EcCCc----eEEEec----CCCeEEeeeeeC
Confidence            9 88321    122222    344889999988

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.35  E-value=1.4e-10  Score=88.52  Aligned_cols=186  Identities=9%  Similarity=-0.080  Sum_probs=116.4

Q ss_pred             cccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            6 ATLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ..+.....+++|+|+|+ +++++..++.|..|+..     ..  ...+..+...+..++++++  |.++++...++.|.+
T Consensus        24 ~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~-----~~--~~~~~~~~~~~~~l~~~~d--g~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           24 ADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDD-----GQ--LSPEMHPSHHQNGHCLNKQ--GHLIACSHGLRRLER   94 (296)
T ss_dssp             ECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETT-----SC--EEEEESSCSSEEEEEECTT--CCEEEEETTTTEEEE
T ss_pred             ecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECC-----CC--eEEEECCCCCcceeeECCC--CcEEEEecCCCeEEE
Confidence            34445678999999998 78888888999999987     33  4455556778999999998  998877766789999


Q ss_pred             EEeeeccCCCcccEEEEEeee----ccccEEeEEEeecCCCcEEEEEeCC---------------CcEEEEEecCccccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFES----TSTQVLDVQFGVSSTSLKLVAAYSD---------------GHVKVYELLDPLILK  145 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~l~~~~~d---------------g~v~iw~~~~~~~~~  145 (240)
                      ||..++       +.......    ....+..++++|  +|.++++....               +.-.||.+...    
T Consensus        95 ~d~~~g-------~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----  161 (296)
T 3e5z_A           95 QREPGG-------EWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----  161 (296)
T ss_dssp             ECSTTC-------CEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----
T ss_pred             EcCCCC-------cEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC----
Confidence            998544       22211111    123456799988  99877763211               11245555431    


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc-ceeEeeecCCC
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW-LPVAELALPED  224 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~-~~~~~~~~~~~  224 (240)
                       .+.. .+.....          ..+.++|+|++.     +|++...+     +.|++|++.... .. .....+.   .
T Consensus       162 -g~~~-~~~~~~~----------~~~gi~~s~dg~-----~lv~~~~~-----~~i~~~~~~~~g-~~~~~~~~~~---~  215 (296)
T 3e5z_A          162 -GTLS-APIRDRV----------KPNGLAFLPSGN-----LLVSDTGD-----NATHRYCLNARG-ETEYQGVHFT---V  215 (296)
T ss_dssp             -SCEE-EEECCCS----------SEEEEEECTTSC-----EEEEETTT-----TEEEEEEECSSS-CEEEEEEEEC---C
T ss_pred             -CCEE-EeecCCC----------CCccEEECCCCC-----EEEEeCCC-----CeEEEEEECCCC-cCcCCCeEee---C
Confidence             1111 1111111          123899999987     66555555     899999987221 11 1111221   2


Q ss_pred             CCCceEEEEEecCCC
Q 026295          225 RSDEVYAVAWALNIG  239 (240)
Q Consensus       225 h~~~v~~v~~sp~~~  239 (240)
                      +...+..++++|++.
T Consensus       216 ~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          216 EPGKTDGLRVDAGGL  230 (296)
T ss_dssp             SSSCCCSEEEBTTSC
T ss_pred             CCCCCCeEEECCCCC
Confidence            334567788888763

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.33  E-value=2.8e-12  Score=101.61  Aligned_cols=184  Identities=5%  Similarity=-0.071  Sum_probs=104.3

Q ss_pred             eEEEEECCCCCEEEEEeCC---CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           12 TTSSSWNYCGQRLATGSTD---GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d---~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      +..++|+|+|++|+.....   ..|.+|++..     .+.......+......+.|+|+  |+.|+..+.++.|.+||+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-----~~~~~l~~~~~~~~~~~~~spd--g~~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-----QQAVQLTEGKGDNTFGGFISTD--ERAFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-----TEEEECCCSSCBCTTTCEECTT--SSEEEEEETTTEEEEEETT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCC-----CcEEEeecCCCCccccceECCC--CCEEEEEEcCCcEEEEECC
Confidence            6778999999998877543   3678888873     3333322222222334789999  9999999988899999986


Q ss_pred             eccCCCcccEEEEEeeeccccEEe-------------------EEEeecCCCcEEEEE-----eCCCcEEEEEecCcccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLD-------------------VQFGVSSTSLKLVAA-----YSDGHVKVYELLDPLIL  144 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~~l~~~-----~~dg~v~iw~~~~~~~~  144 (240)
                      .+       +.......+......                   +.|+|  ++..++..     ..+..|.+||+.+    
T Consensus       111 ~~-------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~~~l~~~d~~~----  177 (396)
T 3c5m_A          111 TL-------EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP--LTSWEKFAEFYHTNPTCRLIKVDIET----  177 (396)
T ss_dssp             TC-------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC--CCSHHHHHHHHHTCCCEEEEEEETTT----
T ss_pred             CC-------CcEEEEecccccCCCCCEEEeccCCccccccccccccCC--CCcceeeeeeccCCCcceEEEEECCC----
Confidence            54       322222222221111                   34556  66554433     3556788888875    


Q ss_pred             cceeEEeeeecccceeeccccccceeeeEEEeC-CCCCCCCceEEEEecCCCC-CCCeEEEEEeecCCCCcceeEeeecC
Q 026295          145 KNWQLQAEFQNAIDSVTMFRKASCISASISWNP-QKGENQGSSFVLGFNSDTP-QLNSSKVWEFDEAHNRWLPVAELALP  222 (240)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~-~~~~i~iw~~~~~~~~~~~~~~~~~~  222 (240)
                        .+.... ..+...+.          .+.|+| ++.     .|+..+.+... ....|.+|++....  .   ..+...
T Consensus       178 --g~~~~~-~~~~~~~~----------~~~~sp~dg~-----~l~~~~~~~~~~~~~~l~~~d~~~~~--~---~~l~~~  234 (396)
T 3c5m_A          178 --GELEVI-HQDTAWLG----------HPIYRPFDDS-----TVGFCHEGPHDLVDARMWLVNEDGSN--V---RKIKEH  234 (396)
T ss_dssp             --CCEEEE-EEESSCEE----------EEEEETTEEE-----EEEEEECSCSSSCSCCCEEEETTSCC--C---EESSCC
T ss_pred             --CcEEee-ccCCcccc----------cceECCCCCC-----EEEEEecCCCCCCCceEEEEECCCCc--e---eEeecc
Confidence              222221 12222233          789999 664     56665543100 00246666654432  1   111111


Q ss_pred             CCCCCceEEEEEecCCC
Q 026295          223 EDRSDEVYAVAWALNIG  239 (240)
Q Consensus       223 ~~h~~~v~~v~~sp~~~  239 (240)
                       .....+..++|+||+.
T Consensus       235 -~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          235 -AEGESCTHEFWIPDGS  250 (396)
T ss_dssp             -CTTEEEEEEEECTTSS
T ss_pred             -CCCccccceEECCCCC
Confidence             0122588899999985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.32  E-value=7.5e-11  Score=89.39  Aligned_cols=155  Identities=8%  Similarity=-0.018  Sum_probs=108.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      .+++|++++.|+.|.+||..     +++.+..+..+. ..+.++.+.|+  |++++  +.++.|..||. ++       +
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~-----tG~~~w~~~~~~~~~~~~~~~~pd--G~ilv--s~~~~V~~~d~-~G-------~   66 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKD-----TKEIVWEYPLEKGWECNSVAATKA--GEILF--SYSKGAKMITR-DG-------R   66 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETT-----TTEEEEEEECCTTCCCCEEEECTT--SCEEE--ECBSEEEEECT-TS-------C
T ss_pred             CCcEEEeeCCCCEEEEEECC-----CCeEEEEeCCCccCCCcCeEECCC--CCEEE--eCCCCEEEECC-CC-------C
Confidence            46799999999999999997     667888887765 46889999999  99888  34778999998 44       6


Q ss_pred             EEEEeeec-cccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEe
Q 026295           99 LCKSFEST-STQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWN  176 (240)
Q Consensus        99 ~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~  176 (240)
                      .+..+... ...+.++.+.|  +|+++++.+. ++.|..++..       ++.+.++..... +.   ........++..
T Consensus        67 ~~W~~~~~~~~~~~~~~~~~--dG~~lv~~~~~~~~v~~vd~~-------Gk~l~~~~~~~~-~~---~~~~~~~~v~~~  133 (276)
T 3no2_A           67 ELWNIAAPAGCEMQTARILP--DGNALVAWCGHPSTILEVNMK-------GEVLSKTEFETG-IE---RPHAQFRQINKN  133 (276)
T ss_dssp             EEEEEECCTTCEEEEEEECT--TSCEEEEEESTTEEEEEECTT-------SCEEEEEEECCS-CS---SGGGSCSCCEEC
T ss_pred             EEEEEcCCCCccccccEECC--CCCEEEEecCCCCEEEEEeCC-------CCEEEEEeccCC-CC---cccccccCceEC
Confidence            66666654 24677888888  9998888887 6666666542       344433321110 00   000011256678


Q ss_pred             CCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          177 PQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       177 p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                      +++.     ++++...+     +.|..||.. ++..|..
T Consensus       134 ~~G~-----~lv~~~~~-----~~v~~~d~~-G~~~w~~  161 (276)
T 3no2_A          134 KKGN-----YLVPLFAT-----SEVREIAPN-GQLLNSV  161 (276)
T ss_dssp             TTSC-----EEEEETTT-----TEEEEECTT-SCEEEEE
T ss_pred             CCCC-----EEEEecCC-----CEEEEECCC-CCEEEEE
Confidence            8876     78877777     999999987 6666654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.31  E-value=3.8e-10  Score=87.92  Aligned_cols=109  Identities=10%  Similarity=0.132  Sum_probs=73.9

Q ss_pred             cceEEEEECCCCCEEEEEeCC---Cc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-----
Q 026295           10 KGTTSSSWNYCGQRLATGSTD---GT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-----   79 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d---~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----   79 (240)
                      ..+..++|+|+|++|+..+.+   +.  |.+|++..     .+....... .. +..+.|+|+  |+.|+.++.+     
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~-----g~~~~l~~~-~~-~~~~~wspd--g~~l~~~~~~~~~~~  129 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET-----LSSKKILEA-KN-IRSLEWNED--SRKLLIVGFKRREDE  129 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT-----TEEEEEEEE-SE-EEEEEECTT--SSEEEEEEECCCC--
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC-----CceEEEEcC-CC-ccceeECCC--CCEEEEEEccCCCcC
Confidence            357789999999999988754   33  77777763     333333333 34 999999999  9988877642     


Q ss_pred             ----------------------CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC------
Q 026295           80 ----------------------GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG------  131 (240)
Q Consensus        80 ----------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg------  131 (240)
                                            ..|.+||+..+       +.+..+.. . .+..+.|+|  +| +++++..++      
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~-------~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~  197 (347)
T 2gop_A          130 DFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE-------EVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYF  197 (347)
T ss_dssp             -------CCCC---------CEEEEEEEETTTT-------EEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSS
T ss_pred             CcEEEcccceeecCcccccCccceEEEEECCCC-------eEEeeecC-C-CcccccCCC--Ce-EEEEEeccccccccc
Confidence                                  46788888654       44244443 3 788899999  88 777776542      


Q ss_pred             -cEEEEEec
Q 026295          132 -HVKVYELL  139 (240)
Q Consensus       132 -~v~iw~~~  139 (240)
                       ...+|.+.
T Consensus       198 ~~~~l~~~d  206 (347)
T 2gop_A          198 KFWDIYIWE  206 (347)
T ss_dssp             CCEEEEEEE
T ss_pred             ccccEEEeC
Confidence             44566554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.29  E-value=2.3e-10  Score=87.35  Aligned_cols=185  Identities=9%  Similarity=-0.004  Sum_probs=111.7

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-e-ecCccEEEEEEcCCCCCCEEEEEecC-----
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-K-VHAGAILKVVWVPPEFGDAVACICSD-----   79 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~~~l~s~~~d-----   79 (240)
                      .+...+.+++++++|+++++...++.|.+||....   ..+.+... . .....+..++++|+  |.++++....     
T Consensus        66 ~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~vtd~~~g~~~~  140 (296)
T 3e5z_A           66 HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGG---EWESIADSFEGKKLNSPNDVCLAPD--GSLWFSDPTYGIDKP  140 (296)
T ss_dssp             SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTC---CEEEEECEETTEECCCCCCEEECTT--SCEEEEECSHHHHCG
T ss_pred             CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCC---cEEEEeeccCCCCCCCCCCEEECCC--CCEEEECCccccccc
Confidence            35567899999999998888777789999998532   22222111 1 11234678999998  9988873210     


Q ss_pred             ----------CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccce-e
Q 026295           80 ----------GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNW-Q  148 (240)
Q Consensus        80 ----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~-~  148 (240)
                                +.-.||.+... +     + +..+.........++|+|  ++..+++.+.++.|.+|++.....   . .
T Consensus       141 ~~~~~~~~~~~~~~l~~~~~~-g-----~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~---~~~  208 (296)
T 3e5z_A          141 EEGYGGEMELPGRWVFRLAPD-G-----T-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGE---TEY  208 (296)
T ss_dssp             GGSSCCCCCSSSCEEEEECTT-S-----C-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSC---EEE
T ss_pred             cccccccccCCCcEEEEECCC-C-----C-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCc---CcC
Confidence                      11244444322 1     2 223334445678899999  998887777789999999863211   1 1


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCc
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDE  228 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~  228 (240)
                      ....+......+          ..+++++++.     ++++.  +     +.|.+|+... .    ....+..   +.. 
T Consensus       209 ~~~~~~~~~~~p----------~~i~~d~~G~-----l~v~~--~-----~~v~~~~~~g-~----~~~~~~~---~~~-  257 (296)
T 3e5z_A          209 QGVHFTVEPGKT----------DGLRVDAGGL-----IWASA--G-----DGVHVLTPDG-D----ELGRVLT---PQT-  257 (296)
T ss_dssp             EEEEECCSSSCC----------CSEEEBTTSC-----EEEEE--T-----TEEEEECTTS-C----EEEEEEC---SSC-
T ss_pred             CCeEeeCCCCCC----------CeEEECCCCC-----EEEEc--C-----CeEEEECCCC-C----EEEEEEC---CCC-
Confidence            111221111111          2789999986     44444  5     8999999752 2    2233332   333 


Q ss_pred             eEEEEE-ecCCC
Q 026295          229 VYAVAW-ALNIG  239 (240)
Q Consensus       229 v~~v~~-sp~~~  239 (240)
                      +++++| +|+++
T Consensus       258 ~~~~~f~~~d~~  269 (296)
T 3e5z_A          258 TSNLCFGGPEGR  269 (296)
T ss_dssp             CCEEEEESTTSC
T ss_pred             ceeEEEECCCCC
Confidence            889999 47754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.29  E-value=1.6e-09  Score=84.02  Aligned_cols=192  Identities=9%  Similarity=0.015  Sum_probs=112.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-----
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTD----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-----   78 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----   78 (240)
                      +...+.+++|+++|+++++...+    +.|.+||....   ....+..-..+...+..+.++|+  |.++++...     
T Consensus        85 ~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~  159 (333)
T 2dg1_A           85 HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD---NLQDIIEDLSTAYCIDDMVFDSK--GGFYFTDFRGYSTN  159 (333)
T ss_dssp             SSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC---SCEEEECSSSSCCCEEEEEECTT--SCEEEEECCCBTTB
T ss_pred             CCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC---EEEEEEccCccCCcccceEECCC--CCEEEEeccccccC
Confidence            45679999999999988887766    68999998743   11211110123457899999998  887776543     


Q ss_pred             -CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCcccccceeEEe-e-ee
Q 026295           79 -DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLILKNWQLQA-E-FQ  154 (240)
Q Consensus        79 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~-~-~~  154 (240)
                       .+.|..++...+       +. ..+......+..++|+|  ++..++ +.+.++.|.+|++.+....  ..... . +.
T Consensus       160 ~~~~l~~~~~~~~-------~~-~~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~--~~~~~~~~~~  227 (333)
T 2dg1_A          160 PLGGVYYVSPDFR-------TV-TPIIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVT--IQPFGATIPY  227 (333)
T ss_dssp             CCEEEEEECTTSC-------CE-EEEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSS--EEEEEEEEEE
T ss_pred             CCceEEEEeCCCC-------EE-EEeecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcC--cccccceEEE
Confidence             234444443321       11 12222234578899998  887554 4456789999998642110  11000 0 00


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC---CCCCCceEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP---EDRSDEVYA  231 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~---~~h~~~v~~  231 (240)
                      ....       . ..+..+++++++.     ++++...+     +.|.+|+.. +.    ....+...   .+|...+.+
T Consensus       228 ~~~~-------~-~~~~~i~~d~~G~-----l~v~~~~~-----~~v~~~d~~-g~----~~~~~~~~~~~~g~~~~~~~  284 (333)
T 2dg1_A          228 YFTG-------H-EGPDSCCIDSDDN-----LYVAMYGQ-----GRVLVFNKR-GY----PIGQILIPGRDEGHMLRSTH  284 (333)
T ss_dssp             ECCS-------S-SEEEEEEEBTTCC-----EEEEEETT-----TEEEEECTT-SC----EEEEEECTTGGGTCSCBCCE
T ss_pred             ecCC-------C-CCCCceEECCCCC-----EEEEEcCC-----CEEEEECCC-CC----EEEEEEcCCCccccccCcce
Confidence            0000       0 1123789999886     56555555     899999873 22    12222222   123336899


Q ss_pred             EEEecCCC
Q 026295          232 VAWALNIG  239 (240)
Q Consensus       232 v~~sp~~~  239 (240)
                      ++|+||++
T Consensus       285 ~~~~~dg~  292 (333)
T 2dg1_A          285 PQFIPGTN  292 (333)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCC
Confidence            99999864

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.28  E-value=4.4e-09  Score=80.42  Aligned_cols=189  Identities=10%  Similarity=0.079  Sum_probs=111.4

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecC------
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSD------   79 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d------   79 (240)
                      +...+.+++++++|+++++ . +..|.+||....   ..+.+.....  ....++++++.|+  |.++++....      
T Consensus        52 ~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g---~~~~~~~~~~~~~~~~~~di~~d~d--G~l~~~~~~~~~~~~~  124 (297)
T 3g4e_A           52 MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ---SAVVLATVDNDKKNNRFNDGKVDPA--GRYFAGTMAEETAPAV  124 (297)
T ss_dssp             CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT---EEEEEEECCTTCSSEEEEEEEECTT--SCEEEEEEECCSBTTB
T ss_pred             CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC---cEEEEEecCCCCCCCCCCCEEECCC--CCEEEecCCccccccc
Confidence            3467889999999996555 4 467899998632   2333322211  1245789999998  8876654322      


Q ss_pred             ---CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEec-CcccccceeEEeeee
Q 026295           80 ---GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELL-DPLILKNWQLQAEFQ  154 (240)
Q Consensus        80 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~-~~~~~~~~~~~~~~~  154 (240)
                         ..-.+|.+....      .... +.........++|+|  +++.| ++.+.++.|.+|++. .............+.
T Consensus       125 ~~~~~~~l~~~d~~g------~~~~-~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~  195 (297)
T 3g4e_A          125 LERHQGALYSLFPDH------HVKK-YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE  195 (297)
T ss_dssp             CCTTCEEEEEECTTS------CEEE-EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC
T ss_pred             ccCCCcEEEEEECCC------CEEE-EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC
Confidence               334666664321      2222 222334567899999  88765 455567889999984 111111111122222


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEE
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAW  234 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~  234 (240)
                      ......          ..+++++++.     +.++....     +.|..|+..++.    ....+..+   ...+++++|
T Consensus       196 ~~~~~p----------~g~~~d~~G~-----lwva~~~~-----~~v~~~d~~tG~----~~~~i~~p---~~~~t~~~f  248 (297)
T 3g4e_A          196 KEEQIP----------DGMCIDAEGK-----LWVACYNG-----GRVIRLDPVTGK----RLQTVKLP---VDKTTSCCF  248 (297)
T ss_dssp             GGGCEE----------EEEEEBTTSC-----EEEEEETT-----TEEEEECTTTCC----EEEEEECS---SSBEEEEEE
T ss_pred             CCCCCC----------CeeEECCCCC-----EEEEEcCC-----CEEEEEcCCCce----EEEEEECC---CCCceEEEE
Confidence            111122          3788999886     56555555     889999977554    22333332   237999999


Q ss_pred             e-cCCC
Q 026295          235 A-LNIG  239 (240)
Q Consensus       235 s-p~~~  239 (240)
                      . ||+.
T Consensus       249 ~g~d~~  254 (297)
T 3g4e_A          249 GGKNYS  254 (297)
T ss_dssp             ESGGGC
T ss_pred             eCCCCC
Confidence            8 7753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.23  E-value=1.6e-10  Score=91.45  Aligned_cols=175  Identities=10%  Similarity=0.083  Sum_probs=101.1

Q ss_pred             hcccccceEEEEECC-CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecC--ccEEEEEEcCCCCCCEEEE
Q 026295            5 VATLDKGTTSSSWNY-CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHA--GAILKVVWVPPEFGDAVAC   75 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~-~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~~l~s   75 (240)
                      +..+...+..++|+| +|++|+....+      ..|.+++....   .   ...+..+.  ..+..+.|+|+  |+.|+.
T Consensus       183 l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~---~~~l~~~~~~~~~~~~~~spd--g~~l~~  254 (388)
T 3pe7_A          183 ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT---N---MRKVKTHAEGESCTHEFWVPD--GSALVY  254 (388)
T ss_dssp             EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC---C---CEESCCCCTTEEEEEEEECTT--SSCEEE
T ss_pred             eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC---c---eEEeeeCCCCcccccceECCC--CCEEEE
Confidence            445566788999999 99999887764      36777777532   1   12222333  35778899999  987655


Q ss_pred             Eec-CC----eEEEEEeeeccCCCcccEEEEEeeecccc---EEeEEEeecCCCcEEEEE---------eCCCcEEEEEe
Q 026295           76 ICS-DG----SLLLWEEIVEDAQPLQWKLCKSFESTSTQ---VLDVQFGVSSTSLKLVAA---------YSDGHVKVYEL  138 (240)
Q Consensus        76 ~~~-d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~l~~~---------~~dg~v~iw~~  138 (240)
                      .+. ++    .|.+||+..+..     +.+..+......   ...+.|+|  +|..|+..         ..+..|.+||+
T Consensus       255 ~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          255 VSYLKGSPDRFIYSADPETLEN-----RQLTSMPACSHLMSNYDGSLMVG--DGSDAPVDVQDDSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             EEEETTCCCEEEEEECTTTCCE-----EEEEEECCEEEEEECTTSSEEEE--EECCC------------CCCCEEEEEET
T ss_pred             EecCCCCCcceEEEEecCCCce-----EEEEcCCCceeeeecCCCCeEcc--CCCcceeEeeeccccccCCCCEEEEEec
Confidence            433 22    399999876521     233333331111   22347999  88877654         44668999998


Q ss_pred             cCcccccceeEEeeeecccceee-ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          139 LDPLILKNWQLQAEFQNAIDSVT-MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .+      .+. ..+..+..... -.+.....+..++|+|++.     .|+..+..+    +...||.++-..
T Consensus       328 ~~------~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~-----~l~~~s~~~----g~~~l~~~~l~~  384 (388)
T 3pe7_A          328 KN------GTQ-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDK-----QILFTSDVH----GKPALYLATLPE  384 (388)
T ss_dssp             TT------TEE-EEEEECCCCCCCBTTBSSTTCCCCEECTTSS-----EEEEEECTT----SSCEEEEEECCG
T ss_pred             cC------Cce-EEeccccCcccccccccccCCCCccCCCCCC-----EEEEEecCC----CceeEEEEECCh
Confidence            76      222 23333322000 0000000123789999997     666666433    788888776543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.22  E-value=2.1e-09  Score=91.95  Aligned_cols=187  Identities=8%  Similarity=-0.065  Sum_probs=114.3

Q ss_pred             eEEEEECCCCCEEEEEeCCCc----------------EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEE
Q 026295           12 TTSSSWNYCGQRLATGSTDGT----------------LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC   75 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~----------------i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s   75 (240)
                      +..++|+|||+.|+.++.++.                |++|++.... ....++.....|...+..+.|+|+  |++|+.
T Consensus       173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-~~~~~v~~~~~~~~~~~~~~~SpD--g~~l~~  249 (710)
T 2xdw_A          173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-SEDILCAEFPDEPKWMGGAELSDD--GRYVLL  249 (710)
T ss_dssp             SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-GGCEEEECCTTCTTCEEEEEECTT--SCEEEE
T ss_pred             cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCc-ccceEEeccCCCCeEEEEEEEcCC--CCEEEE
Confidence            567999999999999988766                9999986331 011233333334556789999999  998887


Q ss_pred             Eec-----CCeEEEEEeee------ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecC
Q 026295           76 ICS-----DGSLLLWEEIV------EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLD  140 (240)
Q Consensus        76 ~~~-----d~~v~iwd~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~  140 (240)
                      .+.     +..|.+||+..      +.      .....+..+...+.. .|+|  +|..|+..+..    +.|.+||+.+
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~------~~~~~l~~~~~~~~~-~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~  320 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGI------LKWVKLIDNFEGEYD-YVTN--EGTVFTFKTNRHSPNYRLINIDFTD  320 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSS------CCCEEEECSSSSCEE-EEEE--ETTEEEEEECTTCTTCEEEEEETTS
T ss_pred             EEEccCCCccEEEEEECcccccccCCc------cceEEeeCCCCcEEE-EEec--cCCEEEEEECCCCCCCEEEEEeCCC
Confidence            664     56899999865      21      123334444444443 4788  77777666543    3588899876


Q ss_pred             cccccceeEEeeeecccc--eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEe
Q 026295          141 PLILKNWQLQAEFQNAID--SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAE  218 (240)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~  218 (240)
                      +.. ..++   .+..+..  .+.          .++|.+.+.     ++++...+     +..+||.++.....  ....
T Consensus       321 ~~~-~~~~---~l~~~~~~~~~~----------~~~~~~~~~-----lv~~~~~~-----g~~~l~~~~~~~g~--~~~~  374 (710)
T 2xdw_A          321 PEE-SKWK---VLVPEHEKDVLE----------WVACVRSNF-----LVLCYLHD-----VKNTLQLHDLATGA--LLKI  374 (710)
T ss_dssp             CCG-GGCE---EEECCCSSCEEE----------EEEEETTTE-----EEEEEEET-----TEEEEEEEETTTCC--EEEE
T ss_pred             CCc-ccce---eccCCCCCCeEE----------EEEEEcCCE-----EEEEEEEC-----CEEEEEEEECCCCC--EEEe
Confidence            311 0122   2222222  233          788886554     67777776     86666655431111  2233


Q ss_pred             eecCCCCCCceEEEEEecCCC
Q 026295          219 LALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       219 ~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +..   +...|..++++|++.
T Consensus       375 l~~---~~~~v~~~~~s~d~~  392 (710)
T 2xdw_A          375 FPL---EVGSVVGYSGQKKDT  392 (710)
T ss_dssp             ECC---CSSEEEEEECCTTCS
T ss_pred             cCC---CCceEEEEecCCCCC
Confidence            333   344788899999763

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.22  E-value=1.8e-10  Score=98.23  Aligned_cols=116  Identities=10%  Similarity=0.032  Sum_probs=80.3

Q ss_pred             cccceEEEEECCCCCEEE-----EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccE--EEEEEcCCCCCCEEEEEecCC
Q 026295            8 LDKGTTSSSWNYCGQRLA-----TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAI--LKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~-----~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      |...+..++|||||++||     .|+.+..|++||+..     ++.+.  ..+...+  ..++|+|+  |+.|+.++.|.
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t-----g~~~~--~~~~~~~~~~~~~wspD--g~~l~~~~~d~  189 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS-----GEWSK--VDVIEGGKYATPKWTPD--SKGFYYEWLPT  189 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT-----CCBCS--SCCBSCCTTCCCEECTT--SSEEEEEECCC
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC-----CCCcC--CcccCcccccceEEecC--CCEEEEEEecC
Confidence            444688999999999999     555567899999983     33220  1111222  68999999  99999988876


Q ss_pred             e-------------EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC----cEEEEE
Q 026295           81 S-------------LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG----HVKVYE  137 (240)
Q Consensus        81 ~-------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg----~v~iw~  137 (240)
                      .             |++|++.++..   .-..+.....+...+..+.|+|  +|++|+..+.++    .|.+++
T Consensus       190 ~~~~~~~~~~~~~~v~~~~l~t~~~---~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~  258 (695)
T 2bkl_A          190 DPSIKVDERPGYTTIRYHTLGTEPS---KDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKR  258 (695)
T ss_dssp             CTTSCGGGGGGGCEEEEEETTSCGG---GCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEEC
T ss_pred             CCCCccccCCCCCEEEEEECCCCch---hceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEc
Confidence            5             99999865421   0024444444556788999999  999888777665    455553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.21  E-value=4.1e-10  Score=84.61  Aligned_cols=179  Identities=9%  Similarity=-0.079  Sum_probs=113.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ..+.+++++++|+++++.. ++.|.+|+.....      ...+. .....+..+++.++  |.++++...++.|.+|+..
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~------~~~~~~~~~~~p~~i~~~~~--g~l~v~~~~~~~i~~~~~~  137 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN------QTVLPFDGLNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAG  137 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSC------CEECCCCSCSSEEEEEECTT--CCEEEEEGGGTEEEEECTT
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCce------EeeeecCCcCCCcceEECCC--CCEEEEECCCCEEEEEECC
Confidence            4678899999999666665 8899999986431      11122 22356889999998  8877777778889998653


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      ..       ............+..++++|  ++.++++...++.|.+|+....      ...........          
T Consensus       138 ~~-------~~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~----------  192 (270)
T 1rwi_B          138 SK-------TQTVLPFTGLNDPDGVAVDN--SGNVYVTDTDNNRVVKLEAESN------NQVVLPFTDIT----------  192 (270)
T ss_dssp             CC-------SCEECCCCSCCSCCCEEECT--TCCEEEEEGGGTEEEEECTTTC------CEEECCCSSCC----------
T ss_pred             Cc-------eeEeeccccCCCceeEEEeC--CCCEEEEECCCCEEEEEecCCC------ceEeecccCCC----------
Confidence            32       11111122224568899988  8886776667789999997652      11111111111          


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .+..+++++++.     ++++...+     +.|.+|+........     ..  ..+-..+.+++++|++.
T Consensus       193 ~p~~i~~d~~g~-----l~v~~~~~-----~~v~~~~~~~~~~~~-----~~--~~~~~~p~~i~~~~~g~  246 (270)
T 1rwi_B          193 APWGIAVDEAGT-----VYVTEHNT-----NQVVKLLAGSTTSTV-----LP--FTGLNTPLAVAVDSDRT  246 (270)
T ss_dssp             SEEEEEECTTCC-----EEEEETTT-----SCEEEECTTCSCCEE-----CC--CCSCSCEEEEEECTTCC
T ss_pred             CceEEEECCCCC-----EEEEECCC-----CcEEEEcCCCCccee-----ec--cCCCCCceeEEECCCCC
Confidence            123789999875     55555555     899999875532111     11  11224789999999863

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.20  E-value=5.7e-10  Score=83.81  Aligned_cols=177  Identities=6%  Similarity=-0.061  Sum_probs=109.8

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ...+++++++|++++ +...++.|.+|+...     .........+...+..+++.++  +.++++.. ++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~p~~i~~~~~--g~l~v~~~-~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS-----TGTTVLPFNGLYQPQGLAVDGA--GTVYVTDF-NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC----------EECCCCSCCSCCCEEECTT--CCEEEEET-TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCC-----cccceEeeCCcCCcceeEECCC--CCEEEEcC-CCEEEEEeCCC
Confidence            677899999999777 546778999998752     2211111223346788999998  88666655 88999999764


Q ss_pred             ccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           90 EDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      .       . ...+. .....+..++++|  ++.++++...++.|.+|+..+.      ...........          
T Consensus        97 ~-------~-~~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~----------  150 (270)
T 1rwi_B           97 N-------N-QTVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSK------TQTVLPFTGLN----------  150 (270)
T ss_dssp             S-------C-CEECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCC------SCEECCCCSCC----------
T ss_pred             c-------e-EeeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCc------eeEeeccccCC----------
Confidence            3       1 12222 2225678999988  8887777677788998865431      11111011111          


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ....++++|++.     ++++...+     +.|.+|+........    ...   .+...+..|+++|++
T Consensus       151 ~p~~i~~~~~g~-----l~v~~~~~-----~~i~~~~~~~~~~~~----~~~---~~~~~p~~i~~d~~g  203 (270)
T 1rwi_B          151 DPDGVAVDNSGN-----VYVTDTDN-----NRVVKLEAESNNQVV----LPF---TDITAPWGIAVDEAG  203 (270)
T ss_dssp             SCCCEEECTTCC-----EEEEEGGG-----TEEEEECTTTCCEEE----CCC---SSCCSEEEEEECTTC
T ss_pred             CceeEEEeCCCC-----EEEEECCC-----CEEEEEecCCCceEe----ecc---cCCCCceEEEECCCC
Confidence            123789999875     56665555     899999976543111    001   122468899999886

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.18  E-value=8.1e-09  Score=85.83  Aligned_cols=162  Identities=12%  Similarity=0.016  Sum_probs=109.6

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEc----CCCCCCEEEEEec-CCeEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWV----PPEFGDAVACICS-DGSLLL   84 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~~l~s~~~-d~~v~i   84 (240)
                      ..+..+.|+|+|+++++++.|+.|.+||+...   +.+.+..+.. ......+.|+    |+  |++++++.. ++.|.+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~---t~~~v~~i~~-G~~P~~ia~s~~~~pD--Gk~l~v~n~~~~~v~V  270 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK---EPTTVAEIKI-GSEARSIETSKMEGWE--DKYAIAGAYWPPQYVI  270 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSS---SCCEEEEEEC-CSEEEEEEECCSTTCT--TTEEEEEEEETTEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCC---CCcEeEEEec-CCCCceeEEccccCCC--CCEEEEEEccCCeEEE
Confidence            45678999999999999999999999999411   3345566654 2346789999    58  887777654 589999


Q ss_pred             EEeeeccCCCcccEEEEEeeec-----------cccEEeEEEeecCCC-cEEEEEeCCCcEEEEEecCcccccceeEEee
Q 026295           85 WEEIVEDAQPLQWKLCKSFEST-----------STQVLDVQFGVSSTS-LKLVAAYSDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      +|..+.       +++..+...           ...+..+..++  ++ .+++....+|.|.++|......    ..+..
T Consensus       271 iD~~t~-------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~--~~~~~vv~~~~~g~v~~vd~~~~~~----~~v~~  337 (567)
T 1qks_A          271 MDGETL-------EPKKIQSTRGMTYDEQEYHPEPRVAAILASH--YRPEFIVNVKETGKILLVDYTDLNN----LKTTE  337 (567)
T ss_dssp             EETTTC-------CEEEEEECCEECTTTCCEESCCCEEEEEECS--SSSEEEEEETTTTEEEEEETTCSSE----EEEEE
T ss_pred             EECCCC-------cEEEEEeccccccccccccCCCceEEEEEcC--CCCEEEEEecCCCeEEEEecCCCcc----ceeee
Confidence            997654       666555421           12566777776  44 4555666779999999875321    11222


Q ss_pred             eecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          153 FQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       153 ~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      +... ...+          .+.|+|++.     +|+++...+    +.|.++|..+.+
T Consensus       338 i~~~-~~~~----------d~~~~pdgr-----~~~va~~~s----n~V~ViD~~t~k  375 (567)
T 1qks_A          338 ISAE-RFLH----------DGGLDGSHR-----YFITAANAR----NKLVVIDTKEGK  375 (567)
T ss_dssp             EECC-SSEE----------EEEECTTSC-----EEEEEEGGG----TEEEEEETTTTE
T ss_pred             eecc-cccc----------CceECCCCC-----EEEEEeCCC----CeEEEEECCCCc
Confidence            2111 1122          788999987     666665433    899999987654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.17  E-value=5.2e-09  Score=81.21  Aligned_cols=181  Identities=9%  Similarity=0.031  Sum_probs=116.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-----ccEEEEEEcCCCCCCEEEEEe-cCCeEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-----GAILKVVWVPPEFGDAVACIC-SDGSLL   83 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~-~d~~v~   83 (240)
                      .....++++++++.+++...++.|.+||..     +.+....+....     .....+++ ..  +.++++.. .++.|.
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-----t~~~~~~i~~g~~~~~~~~p~~i~~-~~--~~lyv~~~~~~~~v~  155 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPK-----TYEITGYIECPDMDMESGSTEQMVQ-YG--KYVYVNCWSYQNRIL  155 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETT-----TTEEEEEEECTTCCTTTCBCCCEEE-ET--TEEEEEECTTCCEEE
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECC-----CCeEEEEEEcCCccccCCCcceEEE-EC--CEEEEEcCCCCCEEE
Confidence            467889999998555554488999999998     556665555322     14556777 33  44444443 488999


Q ss_pred             EEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC----------CcEEEEEecCcccccceeEEeee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD----------GHVKVYELLDPLILKNWQLQAEF  153 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----------g~v~iw~~~~~~~~~~~~~~~~~  153 (240)
                      ++|..++       +.+..+... .....+.++|  +|++++++..+          +.|.++|..+      .+....+
T Consensus       156 viD~~t~-------~~~~~i~~g-~~p~~i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t------~~v~~~~  219 (328)
T 3dsm_A          156 KIDTETD-------KVVDELTIG-IQPTSLVMDK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAET------FTVEKQF  219 (328)
T ss_dssp             EEETTTT-------EEEEEEECS-SCBCCCEECT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTT------TEEEEEE
T ss_pred             EEECCCC-------eEEEEEEcC-CCccceEEcC--CCCEEEEECCCccCCccccCCceEEEEECCC------CeEEEEE
Confidence            9998765       666666542 3457889988  89866666554          7899999876      4554444


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEE
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVA  233 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~  233 (240)
                      ......         ..+.++|+|++.     .|.++.       +.|.+||..+.......  .+.   ........++
T Consensus       220 ~~~~g~---------~p~~la~~~d~~-----~lyv~~-------~~v~~~d~~t~~~~~~~--~~~---~~~~~p~gi~  273 (328)
T 3dsm_A          220 KFKLGD---------WPSEVQLNGTRD-----TLYWIN-------NDIWRMPVEADRVPVRP--FLE---FRDTKYYGLT  273 (328)
T ss_dssp             ECCTTC---------CCEEEEECTTSC-----EEEEES-------SSEEEEETTCSSCCSSC--SBC---CCSSCEEEEE
T ss_pred             ecCCCC---------CceeEEEecCCC-----EEEEEc-------cEEEEEECCCCceeeee--eec---CCCCceEEEE
Confidence            322110         123899999886     566653       56888888665432111  111   1134688999


Q ss_pred             EecCCCC
Q 026295          234 WALNIGR  240 (240)
Q Consensus       234 ~sp~~~~  240 (240)
                      ++|+.++
T Consensus       274 vdp~~g~  280 (328)
T 3dsm_A          274 VNPNNGE  280 (328)
T ss_dssp             ECTTTCC
T ss_pred             EcCCCCe
Confidence            9997654

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.16  E-value=1.2e-08  Score=84.78  Aligned_cols=183  Identities=8%  Similarity=-0.003  Sum_probs=118.6

Q ss_pred             CCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee--eccCCCc
Q 026295           18 NYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI--VEDAQPL   95 (240)
Q Consensus        18 s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~   95 (240)
                      ++.+.++++...++.|.++|..     +.+.+..+.. ...+..+.|+|+  |+++++++.|+.|.+||+.  +.     
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~-----t~~v~~~i~~-g~~p~~v~~SpD--Gr~lyv~~~dg~V~viD~~~~t~-----  230 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGS-----TYEIKTVLDT-GYAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP-----  230 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETT-----TCCEEEEEEC-SSCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-----
T ss_pred             CCCceEEEEeCCCCeEEEEECC-----CCeEEEEEeC-CCCccceEECCC--CCEEEEEcCCCeEEEEECCCCCC-----
Confidence            3445577777888999999998     5667777764 345779999999  9999999999999999995  33     


Q ss_pred             ccEEEEEeeeccccEEeEEEe----ecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccccc-cce
Q 026295           96 QWKLCKSFESTSTQVLDVQFG----VSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA-SCI  169 (240)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~  169 (240)
                        +.+..+... .....++|+    |  +|+++++++ .+++|.++|..+      .+.+..+......+...+.+ ...
T Consensus       231 --~~v~~i~~G-~~P~~ia~s~~~~p--DGk~l~v~n~~~~~v~ViD~~t------~~~~~~i~~~~~~~~~~~~~p~~r  299 (567)
T 1qks_A          231 --TTVAEIKIG-SEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGET------LEPKKIQSTRGMTYDEQEYHPEPR  299 (567)
T ss_dssp             --CEEEEEECC-SEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTT------CCEEEEEECCEECTTTCCEESCCC
T ss_pred             --cEeEEEecC-CCCceeEEccccCC--CCCEEEEEEccCCeEEEEECCC------CcEEEEEeccccccccccccCCCc
Confidence              566666543 346789999    7  898777666 458999999876      55555554321110000000 001


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +..+..++.+.     .+++...++    |.|.++|+......  ....+.    ......++.|+||+-
T Consensus       300 va~i~~s~~~~-----~~vv~~~~~----g~v~~vd~~~~~~~--~v~~i~----~~~~~~d~~~~pdgr  354 (567)
T 1qks_A          300 VAAILASHYRP-----EFIVNVKET----GKILLVDYTDLNNL--KTTEIS----AERFLHDGGLDGSHR  354 (567)
T ss_dssp             EEEEEECSSSS-----EEEEEETTT----TEEEEEETTCSSEE--EEEEEE----CCSSEEEEEECTTSC
T ss_pred             eEEEEEcCCCC-----EEEEEecCC----CeEEEEecCCCccc--eeeeee----ccccccCceECCCCC
Confidence            12566777654     344443433    99999998654321  222232    223577889999863

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.14  E-value=1.4e-08  Score=78.87  Aligned_cols=184  Identities=8%  Similarity=-0.045  Sum_probs=115.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .....+.+. .++++++...++.|.+||..     +++.+..+.. ......++++++  +.++++...++.|.+||..+
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~-----t~~~~~~i~~-~~~p~~i~~~~~--g~lyv~~~~~~~v~~iD~~t  114 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDIN-----TFKEVGRITG-FTSPRYIHFLSD--EKAYVTQIWDYRIFIINPKT  114 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETT-----TCCEEEEEEC-CSSEEEEEEEET--TEEEEEEBSCSEEEEEETTT
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECc-----ccEEEEEcCC-CCCCcEEEEeCC--CeEEEEECCCCeEEEEECCC
Confidence            346677774 35566666667999999998     5666666653 466889999888  75554544789999999876


Q ss_pred             ccCCCcccEEEEEeeecc-----ccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           90 EDAQPLQWKLCKSFESTS-----TQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      .       +....+....     .....+++ .  ++..+++.. .++.|.++|+.+      .+....+..... .   
T Consensus       115 ~-------~~~~~i~~g~~~~~~~~p~~i~~-~--~~~lyv~~~~~~~~v~viD~~t------~~~~~~i~~g~~-p---  174 (328)
T 3dsm_A          115 Y-------EITGYIECPDMDMESGSTEQMVQ-Y--GKYVYVNCWSYQNRILKIDTET------DKVVDELTIGIQ-P---  174 (328)
T ss_dssp             T-------EEEEEEECTTCCTTTCBCCCEEE-E--TTEEEEEECTTCCEEEEEETTT------TEEEEEEECSSC-B---
T ss_pred             C-------eEEEEEEcCCccccCCCcceEEE-E--CCEEEEEcCCCCCEEEEEECCC------CeEEEEEEcCCC-c---
Confidence            5       6655555332     14566777 4  565455444 488999999987      455555443221 1   


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCC-CC----CCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDT-PQ----LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~-~~----~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                             ..+.++|++.     +++++..+.. ..    .+.|.++|..+..    ....+....  ....+.++|+||+
T Consensus       175 -------~~i~~~~dG~-----l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~~~~~~~--g~~p~~la~~~d~  236 (328)
T 3dsm_A          175 -------TSLVMDKYNK-----MWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEKQFKFKL--GDWPSEVQLNGTR  236 (328)
T ss_dssp             -------CCCEECTTSE-----EEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEEEEECCT--TCCCEEEEECTTS
T ss_pred             -------cceEEcCCCC-----EEEEECCCccCCccccCCceEEEEECCCCe----EEEEEecCC--CCCceeEEEecCC
Confidence                   2788899875     4444432100 00    0578888876543    222332211  2367999999987


Q ss_pred             CC
Q 026295          239 GR  240 (240)
Q Consensus       239 ~~  240 (240)
                      .+
T Consensus       237 ~~  238 (328)
T 3dsm_A          237 DT  238 (328)
T ss_dssp             CE
T ss_pred             CE
Confidence            53

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.12  E-value=2.8e-08  Score=75.38  Aligned_cols=182  Identities=7%  Similarity=-0.029  Sum_probs=116.5

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .+...+.+++++++|+++++...++.|.+|+.. .   ..... .+..+...+..+++.++  +.++++...++.|..|+
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~---~~~~~-~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~   84 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-G---KITEY-PLPTPDAKVMCLTISSD--GEVWFTENAANKIGRIT   84 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C---CEEEE-ECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEEC
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-C---CeEEe-cCCcccCceeeEEECCC--CCEEEeCCCCCeEEEEC
Confidence            345679999999999988877667899999987 2   22221 12234567899999988  88877776678899998


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe-eeecccceeecccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA-EFQNAIDSVTMFRK  165 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~  165 (240)
                      ....       ............+..++++|  ++.++++...++.|..||...       .... .+....        
T Consensus        85 ~~g~-------~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~d~~g-------~~~~~~~~~~~--------  140 (299)
T 2z2n_A           85 KKGI-------IKEYTLPNPDSAPYGITEGP--NGDIWFTEMNGNRIGRITDDG-------KIREYELPNKG--------  140 (299)
T ss_dssp             TTSC-------EEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECTTC-------CEEEEECSSTT--------
T ss_pred             CCCc-------EEEEeCCCcCCCceeeEECC--CCCEEEEecCCceEEEECCCC-------CEEEecCCCCC--------
Confidence            7521       11222222345788999988  888777766778899998731       2111 111111        


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                        ..+..+++++++.     ++++...+     +.|..|+. ++.  ... ..+.   .....+..++++|++
T Consensus       141 --~~~~~i~~~~~g~-----l~v~~~~~-----~~i~~~~~-~g~--~~~-~~~~---~~~~~~~~i~~~~~g  194 (299)
T 2z2n_A          141 --SYPSFITLGSDNA-----LWFTENQN-----NAIGRITE-SGD--ITE-FKIP---TPASGPVGITKGNDD  194 (299)
T ss_dssp             --CCEEEEEECTTSC-----EEEEETTT-----TEEEEECT-TCC--EEE-EECS---STTCCEEEEEECTTS
T ss_pred             --CCCceEEEcCCCC-----EEEEeCCC-----CEEEEEcC-CCc--EEE-eeCC---CCCCcceeEEECCCC
Confidence              1223888998875     55555445     78999987 432  111 1111   223468889998875

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.09  E-value=1.7e-08  Score=76.36  Aligned_cols=158  Identities=11%  Similarity=0.030  Sum_probs=109.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEec-CCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACICS-DGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-d~~v~iwd~   87 (240)
                      ..+.+++++|+|++|++  .++.|..||...      +.+..+..+ ...+.++.+.++  |+++++.+. ++.|..+|.
T Consensus        37 ~~~~~~~~~pdG~ilvs--~~~~V~~~d~~G------~~~W~~~~~~~~~~~~~~~~~d--G~~lv~~~~~~~~v~~vd~  106 (276)
T 3no2_A           37 WECNSVAATKAGEILFS--YSKGAKMITRDG------RELWNIAAPAGCEMQTARILPD--GNALVAWCGHPSTILEVNM  106 (276)
T ss_dssp             CCCCEEEECTTSCEEEE--CBSEEEEECTTS------CEEEEEECCTTCEEEEEEECTT--SCEEEEEESTTEEEEEECT
T ss_pred             CCCcCeEECCCCCEEEe--CCCCEEEECCCC------CEEEEEcCCCCccccccEECCC--CCEEEEecCCCCEEEEEeC
Confidence            36889999999999883  467899999842      355556543 346888999999  999988776 666766665


Q ss_pred             eeccCCCcccEEEEEeee------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           88 IVEDAQPLQWKLCKSFES------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      . +       +.+..+..      +......+.+.+  +|.++++...++.|..||..       ++.+.++.... ...
T Consensus       107 ~-G-------k~l~~~~~~~~~~~~~~~~~~v~~~~--~G~~lv~~~~~~~v~~~d~~-------G~~~w~~~~~~-~~~  168 (276)
T 3no2_A          107 K-G-------EVLSKTEFETGIERPHAQFRQINKNK--KGNYLVPLFATSEVREIAPN-------GQLLNSVKLSG-TPF  168 (276)
T ss_dssp             T-S-------CEEEEEEECCSCSSGGGSCSCCEECT--TSCEEEEETTTTEEEEECTT-------SCEEEEEECSS-CCC
T ss_pred             C-C-------CEEEEEeccCCCCcccccccCceECC--CCCEEEEecCCCEEEEECCC-------CCEEEEEECCC-Ccc
Confidence            3 2       44444431      223455667777  99999999999999999976       24444444321 112


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                                .+...+++.     +++++..+     +.|..+|..+++..|..
T Consensus       169 ----------~~~~~~~g~-----~~v~~~~~-----~~v~~~d~~tG~~~w~~  202 (276)
T 3no2_A          169 ----------SSAFLDNGD-----CLVACGDA-----HCFVQLNLESNRIVRRV  202 (276)
T ss_dssp             ----------EEEECTTSC-----EEEECBTT-----SEEEEECTTTCCEEEEE
T ss_pred             ----------ceeEcCCCC-----EEEEeCCC-----CeEEEEeCcCCcEEEEe
Confidence                      566677776     67767666     78999998877766654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.07  E-value=6.6e-09  Score=88.67  Aligned_cols=183  Identities=11%  Similarity=0.032  Sum_probs=109.5

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295           13 TSSSWNYCGQRLATGSTDGT-------------LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~-------------i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      ..++|+|||+.|+.++.|..             |++|++..... ...++.....|...+..+.|+|+  |++|+..+.+
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~-~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~~  247 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS-KDTVVHERTGDPTTFLQSDLSRD--GKYLFVYILR  247 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG-GCEEEECCCCCTTCEEEEEECTT--SCCEEEEEEE
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch-hceEEEecCCCCEEEEEEEECCC--CCEEEEEEeC
Confidence            67999999999999998876             99999974311 12344444456667889999999  9888877665


Q ss_pred             C----eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe---CCCcEEEEEecCcccccceeEEee
Q 026295           80 G----SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY---SDGHVKVYELLDPLILKNWQLQAE  152 (240)
Q Consensus        80 ~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iw~~~~~~~~~~~~~~~~  152 (240)
                      +    .|.+|+...+     .   ...+..+...+....+ +  ++.+++...   .++.|.+||+.++.. ..+.   .
T Consensus       248 ~~~~~~l~~~~~~~~-----~---~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~-~~~~---~  312 (695)
T 2bkl_A          248 GWSENDVYWKRPGEK-----D---FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPAR-ASWK---E  312 (695)
T ss_dssp             TTTEEEEEEECTTCS-----S---CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSG-GGCE---E
T ss_pred             CCCceEEEEEcCCCC-----c---eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCc-cCCe---E
Confidence            5    4555543221     1   2223333344555555 5  566444433   257899999865311 1122   1


Q ss_pred             eecc--cceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          153 FQNA--IDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       153 ~~~~--~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      +..+  ...+.          .++|+ .+.     ++++...+     +..+||.++....   ....+..+  ....|.
T Consensus       313 l~~~~~~~~l~----------~~~~~-~~~-----lv~~~~~d-----g~~~l~~~~~~g~---~~~~l~~~--~~~~v~  366 (695)
T 2bkl_A          313 IVPEDSSASLL----------SVSIV-GGH-----LSLEYLKD-----ATSEVRVATLKGK---PVRTVQLP--GVGAAS  366 (695)
T ss_dssp             EECCCSSCEEE----------EEEEE-TTE-----EEEEEEET-----TEEEEEEEETTCC---EEEECCCS--SSSEEC
T ss_pred             EecCCCCCeEE----------EEEEE-CCE-----EEEEEEEC-----CEEEEEEEeCCCC---eeEEecCC--CCeEEE
Confidence            2222  12233          67777 332     77777777     9999998874221   12223221  234678


Q ss_pred             EEEEecCCC
Q 026295          231 AVAWALNIG  239 (240)
Q Consensus       231 ~v~~sp~~~  239 (240)
                      .++|+||+.
T Consensus       367 ~~~~s~d~~  375 (695)
T 2bkl_A          367 NLMGLEDLD  375 (695)
T ss_dssp             CCBSCTTCS
T ss_pred             EeecCCCCC
Confidence            888888763

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.06  E-value=2.7e-07  Score=71.45  Aligned_cols=187  Identities=9%  Similarity=0.007  Sum_probs=107.1

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecC----Ce
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSD----GS   81 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d----~~   81 (240)
                      +...+.+++|+++|+++++. .+ .|.+||....   ..+.+.....  ....+.++.++|+  |.++++...+    ..
T Consensus        88 ~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g---~~~~~~~~~~~~~~~~~~~i~~d~~--G~l~v~~~~~~~~~~~  160 (326)
T 2ghs_A           88 LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGA  160 (326)
T ss_dssp             CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTC
T ss_pred             CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCC---cEEEEeeCCCCCCCCCCCCEEECCC--CCEEEEeCCCcCCCCc
Confidence            34578999999999877765 44 4889998632   2222221111  1245889999998  8876654322    23


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEec--CcccccceeEEeeeecccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELL--DPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~--~~~~~~~~~~~~~~~~~~~  158 (240)
                      ..||.+..+       +.. .+.........++|+|  +++.++.+ +.++.|.+|++.  +............+.....
T Consensus       161 ~~l~~~~~g-------~~~-~~~~~~~~~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~  230 (326)
T 2ghs_A          161 GSIYHVAKG-------KVT-KLFADISIPNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG  230 (326)
T ss_dssp             EEEEEEETT-------EEE-EEEEEESSEEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred             eEEEEEeCC-------cEE-EeeCCCcccCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCC
Confidence            455555422       222 2222234567899998  88766444 456889999985  2101111111112211111


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe-cC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA-LN  237 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~  237 (240)
                      ..          ..+++++++.     ++++...+     +.|.+|+.. +.    ....+..   +...+++++|+ ||
T Consensus       231 ~p----------~gi~~d~~G~-----lwva~~~~-----~~v~~~d~~-g~----~~~~i~~---~~~~~~~~af~g~d  282 (326)
T 2ghs_A          231 GM----------DGSVCDAEGH-----IWNARWGE-----GAVDRYDTD-GN----HIARYEV---PGKQTTCPAFIGPD  282 (326)
T ss_dssp             EE----------EEEEECTTSC-----EEEEEETT-----TEEEEECTT-CC----EEEEEEC---SCSBEEEEEEESTT
T ss_pred             CC----------CeeEECCCCC-----EEEEEeCC-----CEEEEECCC-CC----EEEEEEC---CCCCcEEEEEecCC
Confidence            11          2788888886     55555455     789999863 22    2233332   23379999998 87


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      ++
T Consensus       283 ~~  284 (326)
T 2ghs_A          283 AS  284 (326)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.06  E-value=1.2e-07  Score=71.83  Aligned_cols=180  Identities=7%  Similarity=-0.039  Sum_probs=115.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ...+.+++++++|+++++...++.|..|+...    ..... .+......+..+.+.++  +.++++...++.|..||. 
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----~~~~~-~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~d~-  127 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKG----IIKEY-TLPNPDSAPYGITEGPN--GDIWFTEMNGNRIGRITD-  127 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEE-ECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECT-
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCC----cEEEE-eCCCcCCCceeeEECCC--CCEEEEecCCceEEEECC-
Confidence            35688999999999888877788899998762    22211 12224457889999988  888777767789999987 


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEee-eecccceeecccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAE-FQNAIDSVTMFRKAS  167 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~  167 (240)
                      .+.      ............+..+++++  ++.++++...++.|..||. +      .+.... +.....         
T Consensus       128 ~g~------~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~-~------g~~~~~~~~~~~~---------  183 (299)
T 2z2n_A          128 DGK------IREYELPNKGSYPSFITLGS--DNALWFTENQNNAIGRITE-S------GDITEFKIPTPAS---------  183 (299)
T ss_dssp             TCC------EEEEECSSTTCCEEEEEECT--TSCEEEEETTTTEEEEECT-T------CCEEEEECSSTTC---------
T ss_pred             CCC------EEEecCCCCCCCCceEEEcC--CCCEEEEeCCCCEEEEEcC-C------CcEEEeeCCCCCC---------
Confidence            321      22222223345678999988  8886666666788999987 3      222211 111111         


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                       .+..+++++++.     ++++...+     +.|.+|+. ++.  ... ..+.   .+...+.+++++|++
T Consensus       184 -~~~~i~~~~~g~-----l~v~~~~~-----~~i~~~~~-~g~--~~~-~~~~---~~~~~~~~i~~~~~g  236 (299)
T 2z2n_A          184 -GPVGITKGNDDA-----LWFVEIIG-----NKIGRITT-SGE--ITE-FKIP---TPNARPHAITAGAGI  236 (299)
T ss_dssp             -CEEEEEECTTSS-----EEEEETTT-----TEEEEECT-TCC--EEE-EECS---STTCCEEEEEECSTT
T ss_pred             -cceeEEECCCCC-----EEEEccCC-----ceEEEECC-CCc--EEE-EECC---CCCCCceeEEECCCC
Confidence             223788998875     55554445     88999987 433  111 1111   234478999999885

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.03  E-value=1.9e-07  Score=71.41  Aligned_cols=187  Identities=9%  Similarity=0.094  Sum_probs=109.4

Q ss_pred             cccceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCCCCcEEEE-eEee--ecCccEEEEEEcCCCCCCEEEEEecC----
Q 026295            8 LDKGTTSSSWNYC-GQRLATGSTDGTLSIFDSPDPSSSSFTCN-LKTK--VHAGAILKVVWVPPEFGDAVACICSD----   79 (240)
Q Consensus         8 h~~~v~~~~~s~~-~~~l~~~~~d~~i~iw~~~~~~~~~~~~~-~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d----   79 (240)
                      +...+.+++++++ |+++++.. ...|.+|+.. .   ....+ ....  .....+.++.+.++  |.++++...+    
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g---~~~~~~~~~~~~~~~~~~~~i~~d~~--g~l~v~~~~~~~~~  141 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-G---TFEEIAKKDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAP  141 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-S---CEEECCSBCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTT
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-C---CEEEEEeccCCCccccCCcCEEECCC--CCEEEEecCccccc
Confidence            4467889999999 76555544 4478889886 2   22222 1111  11235789999998  8877776554    


Q ss_pred             -----------CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEe----ecCCCcEEEEE-eCCCcEEEEEecCccc
Q 026295           80 -----------GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFG----VSSTSLKLVAA-YSDGHVKVYELLDPLI  143 (240)
Q Consensus        80 -----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~l~~~-~~dg~v~iw~~~~~~~  143 (240)
                                 +.|..++.. +       +.... .........++|+    |  ++..+..+ ..++.|.+|++.....
T Consensus       142 ~~~~~~~~~~~~~l~~~~~~-g-------~~~~~-~~~~~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~  210 (314)
T 1pjx_A          142 ADYTRSMQEKFGSIYCFTTD-G-------QMIQV-DTAFQFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAK  210 (314)
T ss_dssp             SCCCBTTSSSCEEEEEECTT-S-------CEEEE-EEEESSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTE
T ss_pred             ccccccccCCCCeEEEECCC-C-------CEEEe-ccCCCCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCc
Confidence                       455555543 2       22222 2223446788998    8  88655444 5678999999762111


Q ss_pred             ccceeEEeeeeccc-ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC
Q 026295          144 LKNWQLQAEFQNAI-DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP  222 (240)
Q Consensus       144 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~  222 (240)
                      .........+..+. ..          ...+++++++.     ++++...+     +.|.+|+..++...    ..+.. 
T Consensus       211 ~~~~~~~~~~~~~~~~~----------p~~i~~d~~G~-----l~v~~~~~-----~~i~~~d~~~g~~~----~~~~~-  265 (314)
T 1pjx_A          211 IENKKVWGHIPGTHEGG----------ADGMDFDEDNN-----LLVANWGS-----SHIEVFGPDGGQPK----MRIRC-  265 (314)
T ss_dssp             EEEEEEEEECCCCSSCE----------EEEEEEBTTCC-----EEEEEETT-----TEEEEECTTCBSCS----EEEEC-
T ss_pred             cccceEEEECCCCCCCC----------CCceEECCCCC-----EEEEEcCC-----CEEEEEcCCCCcEe----EEEeC-
Confidence            10011111221111 11          23788999886     66665566     89999997644322    12222 


Q ss_pred             CCCCCceEEEEEecCCC
Q 026295          223 EDRSDEVYAVAWALNIG  239 (240)
Q Consensus       223 ~~h~~~v~~v~~sp~~~  239 (240)
                        +...+.+++|+|++.
T Consensus       266 --~~~~~~~i~~~~dg~  280 (314)
T 1pjx_A          266 --PFEKPSNLHFKPQTK  280 (314)
T ss_dssp             --SSSCEEEEEECTTSS
T ss_pred             --CCCCceeEEECCCCC
Confidence              334799999999874

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.02  E-value=1.3e-08  Score=80.06  Aligned_cols=144  Identities=10%  Similarity=0.027  Sum_probs=98.0

Q ss_pred             CCCEEEEEe------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec----------CCeEE
Q 026295           20 CGQRLATGS------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS----------DGSLL   83 (240)
Q Consensus        20 ~~~~l~~~~------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----------d~~v~   83 (240)
                      +++++.+..      .|+.|.+||..     +++.+..+..+..+  .++|+|+  +++++++..          ++.|.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~-----t~~~~~~i~~g~~p--~i~~spd--g~~lyv~~~~~~~~~~g~~~~~v~   84 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYT-----NGKFLGMVPTAFNG--HVQVSND--GKKIYTMTTYHERITRGKRSDVVE   84 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETT-----TCCEEEEEECCEEE--EEEECTT--SSEEEEEEEEETTSSSSCEEEEEE
T ss_pred             CCCEEEEECCCCCccccCeEEEEECC-----CCeEEEEecCCCCC--ceEECCC--CCEEEEEEecccccccCCCCCEEE
Confidence            566666654      36799999987     55666777765555  8999999  998888763          56799


Q ss_pred             EEEeeeccCCCcccEEEEEeeec------cccEEeEEEeecCCCcEEEEEeC--CCcEEEEEecCcccccceeEEee-ee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFEST------STQVLDVQFGVSSTSLKLVAAYS--DGHVKVYELLDPLILKNWQLQAE-FQ  154 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~-~~  154 (240)
                      +||..+.       +.+..+...      ......++|+|  +|++|++++.  +++|.+||+.+      .+.+.. +.
T Consensus        85 v~d~~t~-------~~~~~i~~~~~~~~~g~~p~~i~~sp--dg~~l~v~n~~~~~~v~v~d~~~------~~~~~~~i~  149 (361)
T 2oiz_A           85 VWDADKL-------TFEKEISLPPKRVQGLNYDGLFRQTT--DGKFIVLQNASPATSIGIVDVAK------GDYVEDVTA  149 (361)
T ss_dssp             EEETTTC-------CEEEEEEECTTBCCBCCCGGGEEECT--TSSEEEEEEESSSEEEEEEETTT------TEEEEEEGG
T ss_pred             EEECcCC-------cEEEEEEcCccccccCCCcceEEECC--CCCEEEEECCCCCCeEEEEECCC------CcEEEEEec
Confidence            9998655       566666532      23467899999  9999988874  58999999987      455444 32


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ....  .          .+.+.|.+.    ..+++.+.|     |.+.+|+...
T Consensus       150 ~~~~--~----------~v~~~p~~~----~~~~~~~~d-----g~~~~v~~~~  182 (361)
T 2oiz_A          150 AAGC--W----------SVIPQPNRP----RSFMTICGD-----GGLLTINLGE  182 (361)
T ss_dssp             GTTE--E----------EEEECTTSS----SEEEEEETT-----SSEEEEEECT
T ss_pred             CCCc--c----------eeEEcCCCC----eeEEEECCC-----CcEEEEEECC
Confidence            2110  0          244566553    155666666     7777777654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.02  E-value=3.1e-08  Score=85.21  Aligned_cols=186  Identities=11%  Similarity=0.026  Sum_probs=104.3

Q ss_pred             cceEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC----
Q 026295           10 KGTTSSSWNYCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG----   80 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~----   80 (240)
                      ..+..++|||||++||.++.+     ..|++||+..     ++.+.. ..+...+..++|+|+   +.|+.+..+.    
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t-----g~~~~~-~~~~~~~~~~~wspD---~~l~~~~~~~~~~~  233 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD-----GKPLAD-ELKWVKFSGLAWLGN---DALLYSRFAEPKEG  233 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT-----CCEEEE-EEEEEESCCCEESTT---SEEEEEECCCC---
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC-----CCCCCc-cCCCceeccEEEECC---CEEEEEEecCcccc
Confidence            367889999999999887654     3599999984     333322 112222357899997   4455444444    


Q ss_pred             ----------eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-----cEEEEEecCccccc
Q 026295           81 ----------SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-----HVKVYELLDPLILK  145 (240)
Q Consensus        81 ----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~~~~  145 (240)
                                .|.+|++.++..   .-..+.....+...+..+.|+|  +|++|+..+.++     .|.+||+.++.   
T Consensus       234 ~~~~~~~~~~~v~~~~lgt~~~---~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~---  305 (741)
T 1yr2_A          234 QAFQALNYNQTVWLHRLGTPQS---ADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGK---  305 (741)
T ss_dssp             -----CCCCCEEEEEETTSCGG---GCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTE---
T ss_pred             cccccCCCCCEEEEEECCCCch---hCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCC---
Confidence                      377888744311   0022322223334578899999  999888777544     78999987621   


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR  225 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h  225 (240)
                       .+....+..+.....          .. +.|++.     .|+..+.++ ...+.|.+|++.+....+.  ..++   ++
T Consensus       306 -~~~~~~l~~~~~~~~----------~~-~~~dg~-----~l~~~s~~~-~~~~~l~~~d~~~~~~~~~--~l~~---~~  362 (741)
T 1yr2_A          306 -IGPVTALIPDLKAQW----------DF-VDGVGD-----QLWFVSGDG-APLKKIVRVDLSGSTPRFD--TVVP---ES  362 (741)
T ss_dssp             -ECCCEEEECSSSSCE----------EE-EEEETT-----EEEEEECTT-CTTCEEEEEECSSSSCEEE--EEEC---CC
T ss_pred             -CcccEEecCCCCceE----------EE-EeccCC-----EEEEEECCC-CCCCEEEEEeCCCCccccE--EEec---CC
Confidence             010222332222111          22 347766     666666531 0015688888765321121  2222   23


Q ss_pred             CCceEEEEEe
Q 026295          226 SDEVYAVAWA  235 (240)
Q Consensus       226 ~~~v~~v~~s  235 (240)
                      ...+.+++|+
T Consensus       363 ~~~l~~~~~~  372 (741)
T 1yr2_A          363 KDNLESVGIA  372 (741)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            3356677776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.99  E-value=1.6e-08  Score=79.86  Aligned_cols=171  Identities=7%  Similarity=0.014  Sum_probs=96.9

Q ss_pred             cccccceEEEEECC-CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeec-CccEEEEEEcCCCCCCEEEEEe
Q 026295            6 ATLDKGTTSSSWNY-CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVH-AGAILKVVWVPPEFGDAVACIC   77 (240)
Q Consensus         6 ~~h~~~v~~~~~s~-~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~   77 (240)
                      ..+...+..+.|+| ++++|+..+.+      ..|.+|++...   ..+.+.  ... ...+..+.|+|+  |+.|+..+
T Consensus       184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~---~~~~l~--~~~~~~~~~~~~~spd--g~~l~~~~  256 (396)
T 3c5m_A          184 HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGS---NVRKIK--EHAEGESCTHEFWIPD--GSAMAYVS  256 (396)
T ss_dssp             EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSC---CCEESS--CCCTTEEEEEEEECTT--SSCEEEEE
T ss_pred             ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCC---ceeEee--ccCCCccccceEECCC--CCEEEEEe
Confidence            34556788999999 78877776654      35788887632   112221  111 235788999999  98777665


Q ss_pred             cC-----CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe----------------CCCcEEEE
Q 026295           78 SD-----GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY----------------SDGHVKVY  136 (240)
Q Consensus        78 ~d-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------------~dg~v~iw  136 (240)
                      .+     +.|.+||+..+..     ..+..+..    .. +.|+|. +|.++++++                .++.|.+|
T Consensus       257 ~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~----~~-~~~s~~-dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~  325 (396)
T 3c5m_A          257 YFKGQTDRVIYKANPETLEN-----EEVMVMPP----CS-HLMSNF-DGSLMVGDGCDAPVDVADADSYNIENDPFLYVL  325 (396)
T ss_dssp             EETTTCCEEEEEECTTTCCE-----EEEEECCS----EE-EEEECS-SSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred             cCCCCccceEEEEECCCCCe-----EEeeeCCC----CC-CCccCC-CCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence            43     4499999865411     22222221    22 788752 566676654                34679999


Q ss_pred             EecCcccccceeEEeeeecccceeec-cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          137 ELLDPLILKNWQLQAEFQNAIDSVTM-FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      |+.+.      +. ..+..+...+.. ..........++|+|++.     .|+..+..+    +...||.++...
T Consensus       326 d~~~~------~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~-----~l~~~s~~~----~~~~l~~~~~~~  384 (396)
T 3c5m_A          326 NTKAK------SA-QKLCKHSTSWDVLDGDRQITHPHPSFTPNDD-----GVLFTSDFE----GVPAIYIADVPE  384 (396)
T ss_dssp             ETTTT------BC-CEEEECCCCCCCBTTBSSTTCCCCEECTTSS-----EEEEEECTT----SSCEEEEEECCT
T ss_pred             ecccC------ce-EEccCCCCccccccccccCCCCCceEccCCC-----eEEEEecCC----CCceEEEEEEcc
Confidence            98752      21 122222211000 000000012678999987     676666543    777777776443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.98  E-value=1.5e-07  Score=75.34  Aligned_cols=163  Identities=10%  Similarity=-0.060  Sum_probs=98.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC--eEEEEEee
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG--SLLLWEEI   88 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~   88 (240)
                      ....++|+++++++++...++.|++||...     ......... ..... ++|+++  ++.|+++..++  .|.+++..
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-----g~~~~~~~~-~~~~~-ia~~~~--g~~l~~~d~~~~~~I~~~d~~  202 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-----NKVTTVHPG-FKGGK-PAVTKD--KQRVYSIGWEGTHTVYVYMKA  202 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTT-----TEEEEEEET-CCBCB-CEECTT--SSEEEEEBSSTTCEEEEEEGG
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCC-----CEEEEeecc-CCCCc-eeEecC--CCcEEEEecCCCceEEEEEcC
Confidence            577899999999888887789999999973     233333332 23334 999999  98888887766  67777765


Q ss_pred             eccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           89 VEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      ...    ....+..+.. ....+..++++|  ++..|..+..++.|..||.....    .......... .      ...
T Consensus       203 ~~~----~~~~~g~~~~~~~~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~----~~~~~~~~~~-g------~~~  265 (409)
T 3hrp_A          203 SGW----APTRIGQLGSTFSGKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQE----VTLIKQLELS-G------SLG  265 (409)
T ss_dssp             GTT----CEEEEEECCTTSCSCCCBCEECT--TSSEEEEECTTCEEEEEETTTCC----EEEEEECCCC-S------CCC
T ss_pred             CCc----eeEEeeeccchhcCCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCC----EEEEeccccc-C------CCC
Confidence            431    0012211112 345678899987  55556667778899999987521    1111110000 0      000


Q ss_pred             ceee-eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          168 CISA-SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       168 ~~~~-~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .... .++|+|+..     .|.++....    +.|+.|+...
T Consensus       266 ~~P~~~ia~~p~~g-----~lyv~d~~~----~~I~~~~~~g  298 (409)
T 3hrp_A          266 TNPGPYLIYYFVDS-----NFYMSDQNL----SSVYKITPDG  298 (409)
T ss_dssp             CSSCCEEEEETTTT-----EEEEEETTT----TEEEEECTTC
T ss_pred             CCccccEEEeCCCC-----EEEEEeCCC----CEEEEEecCC
Confidence            0111 799999644     344444332    8898888654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.97  E-value=9e-08  Score=73.27  Aligned_cols=162  Identities=13%  Similarity=0.165  Sum_probs=100.6

Q ss_pred             cceEEEEECCCCCEEEEEeCC---------------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEc----CCCCC
Q 026295           10 KGTTSSSWNYCGQRLATGSTD---------------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWV----PPEFG   70 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d---------------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~   70 (240)
                      ..+.+++++++|+++++...+               +.|..|+...    ....   +..+......++|+    ++  +
T Consensus       117 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g----~~~~---~~~~~~~~~~i~~~~~~d~d--g  187 (314)
T 1pjx_A          117 QGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----QMIQ---VDTAFQFPNGIAVRHMNDGR--P  187 (314)
T ss_dssp             BCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----CEEE---EEEEESSEEEEEEEECTTSC--E
T ss_pred             cCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC----CEEE---eccCCCCcceEEEecccCCC--C
Confidence            357899999999988877655               4566666541    2222   22233456789999    88  8


Q ss_pred             CEEEEE-ecCCeEEEEEeeeccCCCcccEEEEEeeecc-ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee
Q 026295           71 DAVACI-CSDGSLLLWEEIVEDAQPLQWKLCKSFESTS-TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        71 ~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                      +.+..+ ..++.|.+|++... +..........+..+. ..+..+++++  +|.++++...++.|.+||..+      .+
T Consensus       188 ~~l~v~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~p~~i~~d~--~G~l~v~~~~~~~i~~~d~~~------g~  258 (314)
T 1pjx_A          188 YQLIVAETPTKKLWSYDIKGP-AKIENKKVWGHIPGTHEGGADGMDFDE--DNNLLVANWGSSHIEVFGPDG------GQ  258 (314)
T ss_dssp             EEEEEEETTTTEEEEEEEEET-TEEEEEEEEEECCCCSSCEEEEEEEBT--TCCEEEEEETTTEEEEECTTC------BS
T ss_pred             CEEEEEECCCCeEEEEECCCC-CccccceEEEECCCCCCCCCCceEECC--CCCEEEEEcCCCEEEEEcCCC------Cc
Confidence            655544 56789999998621 0000001222333332 4578899988  898777777788999999864      22


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ....+..+...+.          +++|+|++.     .|.++...+    +.|..|++..
T Consensus       259 ~~~~~~~~~~~~~----------~i~~~~dg~-----~l~v~~~~~----~~l~~~~~~~  299 (314)
T 1pjx_A          259 PKMRIRCPFEKPS----------NLHFKPQTK-----TIFVTEHEN----NAVWKFEWQR  299 (314)
T ss_dssp             CSEEEECSSSCEE----------EEEECTTSS-----EEEEEETTT----TEEEEEECSS
T ss_pred             EeEEEeCCCCCce----------eEEECCCCC-----EEEEEeCCC----CeEEEEeCCC
Confidence            2223333222233          888988875     565555433    7999998764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.93  E-value=1.1e-06  Score=67.09  Aligned_cols=184  Identities=12%  Similarity=0.116  Sum_probs=105.2

Q ss_pred             ceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .-.+..|++++ .++++...++.|..||....     +. ..+ .....+.++.++++  |.++++.  +..|.+||...
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~-----~~-~~~-~~~~~~~~i~~~~d--G~l~v~~--~~~l~~~d~~~   82 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK-----QV-QRV-TMDAPVSSVALRQS--GGYVATI--GTKFCALNWKE   82 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTC-----CE-EEE-ECSSCEEEEEEBTT--SSEEEEE--TTEEEEEETTT
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCC-----cE-EEE-eCCCceEEEEECCC--CCEEEEE--CCeEEEEECCC
Confidence            45688999954 56666667889999998732     22 222 23567999999998  8865553  56788999765


Q ss_pred             ccCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCC---------CcEEEEEecCcccccceeEEeeeecccc
Q 026295           90 EDAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSD---------GHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +.     +..+.....  ....+..++++|  +|.++++....         ....+|.+...     ....... ... 
T Consensus        83 g~-----~~~~~~~~~~~~~~~~~di~~d~--dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~~~~~~-~~~-  148 (297)
T 3g4e_A           83 QS-----AVVLATVDNDKKNNRFNDGKVDP--AGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HHVKKYF-DQV-  148 (297)
T ss_dssp             TE-----EEEEEECCTTCSSEEEEEEEECT--TSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SCEEEEE-EEE-
T ss_pred             Cc-----EEEEEecCCCCCCCCCCCEEECC--CCCEEEecCCcccccccccCCCcEEEEEECC-----CCEEEEe-ecc-
Confidence            31     122222211  234578899988  88865544321         33466666532     1111111 110 


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEE-ecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLG-FNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~-~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                               ...+.++|+|++.     .|.++ +.+     +.|.+|+++...........+.....+......++++++
T Consensus       149 ---------~~pngi~~spdg~-----~lyv~~~~~-----~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~  209 (297)
T 3g4e_A          149 ---------DISNGLDWSLDHK-----IFYYIDSLS-----YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE  209 (297)
T ss_dssp             ---------SBEEEEEECTTSC-----EEEEEEGGG-----TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT
T ss_pred             ---------ccccceEEcCCCC-----EEEEecCCC-----CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC
Confidence                     1124899999986     45444 445     899999985222221111111111112235677888877


Q ss_pred             C
Q 026295          238 I  238 (240)
Q Consensus       238 ~  238 (240)
                      +
T Consensus       210 G  210 (297)
T 3g4e_A          210 G  210 (297)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=5.4e-07  Score=71.82  Aligned_cols=199  Identities=10%  Similarity=0.105  Sum_probs=124.7

Q ss_pred             ceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecC---ccEEEEEEcCCCCCCEEEEEe----
Q 026295           11 GTTSSSWNYCGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHA---GAILKVVWVPPEFGDAVACIC----   77 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~~----   77 (240)
                      .-..+...|+| .++++..+      +.|.++|..     +.+.+.++..-.   .--+.+-|+|+  ++.+++..    
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-----T~~v~~~~~~~~~~~~~~Yd~~~~p~--~~~mvsS~wg~p  210 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-----SFEPLGKWEIDRGDQYLAYDFWWNLP--NEVLVSSEWAVP  210 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-----TCCEEEECCSBCTTCCCCCCEEEETT--TTEEEECBCCCH
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-----CCeEEEEEccCCCCccccceEEECCC--CCEEEEccCcCc
Confidence            34567888999 77777666      789999988     667777775221   22456888999  88887774    


Q ss_pred             ---------------cCCeEEEEEeeeccCCCcccEEEEEeeec--cccEEeEEE--eecCCCcEEEEEe------CCCc
Q 026295           78 ---------------SDGSLLLWEEIVEDAQPLQWKLCKSFEST--STQVLDVQF--GVSSTSLKLVAAY------SDGH  132 (240)
Q Consensus        78 ---------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~~~l~~~~------~dg~  132 (240)
                                     ...+|.+||+..+       +.+.++...  ......+.|  +|  ++.++.+++      .+++
T Consensus       211 ~~~~~g~~~~~~~~~~~d~V~v~D~~~~-------k~~~tI~vg~~g~~P~~i~f~~~P--dg~~aYV~~e~~~~~Lss~  281 (462)
T 2ece_A          211 NTIEDGLKLEHLKDRYGNRIHFWDLRKR-------KRIHSLTLGEENRMALELRPLHDP--TKLMGFINMVVSLKDLSSS  281 (462)
T ss_dssp             HHHTTCCCTTTHHHHSCCEEEEEETTTT-------EEEEEEESCTTEEEEEEEEECSST--TCCEEEEEEEEETTTCCEE
T ss_pred             cccccccchhhhhhccCCEEEEEECCCC-------cEeeEEecCCCCCccceeEeeECC--CCCEEEEEEeeeccCCCce
Confidence                           3679999999765       677776642  234556666  77  888776666      5678


Q ss_pred             EEEEEecCcccccceeEEeeeecccceeec--------cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEE
Q 026295          133 VKVYELLDPLILKNWQLQAEFQNAIDSVTM--------FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVW  204 (240)
Q Consensus       133 v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~--------~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw  204 (240)
                      |.+|....    ..++..+.+......+..        ++........+.++|++.     +|.++....    +.|.+|
T Consensus       282 V~v~~~d~----g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr-----fLYVSnrg~----d~Vavf  348 (462)
T 2ece_A          282 IWLWFYED----GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK-----FLYLSLWGI----GEVRQY  348 (462)
T ss_dssp             EEEEEEET----TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC-----EEEEEETTT----TEEEEE
T ss_pred             EEEEEecC----CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCC-----EEEEEeCCC----CEEEEE
Confidence            88887753    234444443322211100        000011234899999997     777776654    899999


Q ss_pred             EeecCCCCcceeEeeecCCC-----C------CCceEEEEEecCCCC
Q 026295          205 EFDEAHNRWLPVAELALPED-----R------SDEVYAVAWALNIGR  240 (240)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~-----h------~~~v~~v~~sp~~~~  240 (240)
                      |+.... ...+...+..-..     |      ...-..++++||+.|
T Consensus       349 dV~d~~-~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~  394 (462)
T 2ece_A          349 DISNPF-KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR  394 (462)
T ss_dssp             ECSSTT-SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred             EecCCC-CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence            986432 2334444432100     0      013588999999853

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.92  E-value=1.2e-06  Score=66.26  Aligned_cols=180  Identities=8%  Similarity=0.006  Sum_probs=114.0

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ...+.+++++++|++.++...++.|.+|+.. .   .... ..+......+..+.+.++  +.++++...++.|..+|..
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~---~~~~-~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~v~~~d~~   91 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-G---RIKE-FEVPTPDAKVMCLIVSSL--GDIWFTENGANKIGKLSKK   91 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-S---CEEE-EECSSTTCCEEEEEECTT--SCEEEEETTTTEEEEECTT
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-C---ceEE-EECCCCCCcceeEEECCC--CCEEEEecCCCeEEEECCC
Confidence            4578899999999988887778999999987 2   2222 122233467889999888  8877776667889999876


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE-eeeecccceeecccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ-AEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~  167 (240)
                       +.      ............+..+++++  ++.++++...++.|..++...       +.. ..+.....         
T Consensus        92 -g~------~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-------~~~~~~~~~~~~---------  146 (300)
T 2qc5_A           92 -GG------FTEYPLPQPDSGPYGITEGL--NGDIWFTQLNGDRIGKLTADG-------TIYEYDLPNKGS---------  146 (300)
T ss_dssp             -SC------EEEEECSSTTCCEEEEEECS--TTCEEEEETTTTEEEEECTTS-------CEEEEECSSTTC---------
T ss_pred             -CC------eEEecCCCCCCCCccceECC--CCCEEEEccCCCeEEEECCCC-------CEEEccCCCCCC---------
Confidence             31      22122222346688999988  888777666678888887652       111 11111111         


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                       .+..+++++++.     ++++...+     +.|..|+. ++.  ...   +.. ..+...+..++++|++
T Consensus       147 -~~~~i~~d~~g~-----l~v~~~~~-----~~i~~~~~-~g~--~~~---~~~-~~~~~~~~~i~~d~~g  199 (300)
T 2qc5_A          147 -YPAFITLGSDNA-----LWFTENQN-----NSIGRITN-TGK--LEE---YPL-PTNAAAPVGITSGNDG  199 (300)
T ss_dssp             -CEEEEEECTTSS-----EEEEETTT-----TEEEEECT-TCC--EEE---EEC-SSTTCCEEEEEECTTS
T ss_pred             -CceeEEECCCCC-----EEEEecCC-----CeEEEECC-CCc--EEE---eeC-CCCCCCcceEEECCCC
Confidence             123788998875     55554445     78888887 322  111   111 1233468889998875

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.91  E-value=4.5e-07  Score=77.98  Aligned_cols=184  Identities=12%  Similarity=0.046  Sum_probs=109.5

Q ss_pred             EEEEECCCCCEEEEEeCCCc--------------EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec
Q 026295           13 TSSSWNYCGQRLATGSTDGT--------------LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~--------------i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ..++|+|| +.|+.++.++.              |++|++..... ...++.....+...+..+.|+|+  |++|+..+.
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~lv~~~~~~~~~~~~~~~SpD--G~~l~~~~~  287 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS-ADQPVFATPELPKRGHGASVSSD--GRWVVITSS  287 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG-GCEEEECCTTCTTCEEEEEECTT--SCEEEEEEE
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch-hCEEEeccCCCCeEEEEEEECCC--CCEEEEEEE
Confidence            57899999 99998887654              88888853210 11233333333345889999999  998887765


Q ss_pred             CC-----eEEEEEeeeccCCCcccEE-EEEeeeccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecCccccccee
Q 026295           79 DG-----SLLLWEEIVEDAQPLQWKL-CKSFESTSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        79 d~-----~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~  148 (240)
                      ++     .|.+||+..+.      .. ...+..+...+... ++|  ++..|+..+.+    +.|.+||+.++.  ..+.
T Consensus       288 ~~~~~~~~l~~~d~~~~~------~~~~~~l~~~~~~~~~~-~~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~  356 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGK------IGPVTALIPDLKAQWDF-VDG--VGDQLWFVSGDGAPLKKIVRVDLSGST--PRFD  356 (741)
T ss_dssp             CTTCSCCEEEEEEEETTE------ECCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEECSSSS--CEEE
T ss_pred             ccCCCcceEEEEECCCCC------CcccEEecCCCCceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCc--cccE
Confidence            44     89999987541      11 23333333344444 347  77777777653    458889886531  1122


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCc
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDE  228 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~  228 (240)
                        ..+..+...+.          .++|. .+.     ++++...+     +..+||.++....   ....+..  .+...
T Consensus       357 --~l~~~~~~~l~----------~~~~~-~~~-----lv~~~~~d-----g~~~l~~~~~~g~---~~~~l~~--~~~~~  408 (741)
T 1yr2_A          357 --TVVPESKDNLE----------SVGIA-GNR-----LFASYIHD-----AKSQVLAFDLDGK---PAGAVSL--PGIGS  408 (741)
T ss_dssp             --EEECCCSSEEE----------EEEEE-BTE-----EEEEEEET-----TEEEEEEEETTSC---EEEECBC--SSSCE
T ss_pred             --EEecCCCCeEE----------EEEEE-CCE-----EEEEEEEC-----CEEEEEEEeCCCC---ceeeccC--CCCeE
Confidence              11222222222          56776 222     67777777     9988888763221   2222322  12347


Q ss_pred             eEEEEEecCCC
Q 026295          229 VYAVAWALNIG  239 (240)
Q Consensus       229 v~~v~~sp~~~  239 (240)
                      |..++|+||+.
T Consensus       409 v~~~~~s~d~~  419 (741)
T 1yr2_A          409 ASGLSGRPGDR  419 (741)
T ss_dssp             EEEEECCBTCS
T ss_pred             EEEeecCCCCC
Confidence            88999999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.88  E-value=2.5e-07  Score=70.91  Aligned_cols=182  Identities=7%  Similarity=-0.039  Sum_probs=106.0

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe-Eeee-cCccEEEEEEcCCCCCCEEEE----Eec--
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNL-KTKV-HAGAILKVVWVPPEFGDAVAC----ICS--   78 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~~~~-h~~~v~~~~~~~~~~~~~l~s----~~~--   78 (240)
                      .+...+..++++++|+++++...++.|.+|+...    ..+.+. ...+ ....++++.+.++  |.+.++    +..  
T Consensus        83 ~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g----~~~~~~~~~~~~~~~~~~~i~~d~d--G~l~~td~~~g~~~~  156 (305)
T 3dr2_A           83 DATAFTNGNAVDAQQRLVHCEHGRRAITRSDADG----QAHLLVGRYAGKRLNSPNDLIVARD--GAIWFTDPPFGLRKP  156 (305)
T ss_dssp             ESCSCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEEEEECEETTEECSCCCCEEECTT--SCEEEECCSGGGSCG
T ss_pred             CCCCccceeeECCCCCEEEEECCCCEEEEECCCC----CEEEEEeccCCCccCCCCCEEECCC--CCEEEeCcCCCcccc
Confidence            3445688999999999777666667899998752    222221 1111 1234678999998  987775    321  


Q ss_pred             -----------CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC------CcEEEEEecCc
Q 026295           79 -----------DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD------GHVKVYELLDP  141 (240)
Q Consensus        79 -----------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~~  141 (240)
                                 .+.|..+|...+.     +..+.    .......++|+|  ++..|..+...      +.|.+|++...
T Consensus       157 ~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~~----~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          157 SQGCPADPELAHHSVYRLPPDGSP-----LQRMA----DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             GGSCCCCCSSSCEEEEEECSSSCC-----CEEEE----EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             ccccccccccCCCeEEEEcCCCCc-----EEEEe----cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence                       1345555553331     12221    224567899999  99877776654      68999998753


Q ss_pred             ccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeec
Q 026295          142 LILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELAL  221 (240)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~  221 (240)
                      . +.........  ....          ...+++++++.      |.++..      +.|.+|+... .    ....+..
T Consensus       226 ~-l~~~~~~~~~--~~~~----------pdgi~~d~~G~------lwv~~~------~gv~~~~~~g-~----~~~~~~~  275 (305)
T 3dr2_A          226 A-LHDRRHFASV--PDGL----------PDGFCVDRGGW------LWSSSG------TGVCVFDSDG-Q----LLGHIPT  275 (305)
T ss_dssp             E-EEEEEEEECC--SSSC----------CCSEEECTTSC------EEECCS------SEEEEECTTS-C----EEEEEEC
T ss_pred             C-ccCCeEEEEC--CCCC----------CCeEEECCCCC------EEEecC------CcEEEECCCC-C----EEEEEEC
Confidence            1 1111111110  1111          12688888885      444544      4588888632 1    2233332


Q ss_pred             CCCCCCceEEEEEecCCC
Q 026295          222 PEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       222 ~~~h~~~v~~v~~sp~~~  239 (240)
                      ..    .+.+++|+|+++
T Consensus       276 ~~----~~~~~~f~~d~~  289 (305)
T 3dr2_A          276 PG----TASNCTFDQAQQ  289 (305)
T ss_dssp             SS----CCCEEEECTTSC
T ss_pred             CC----ceeEEEEeCCCC
Confidence            22    588999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.88  E-value=1.8e-06  Score=65.37  Aligned_cols=179  Identities=7%  Similarity=-0.011  Sum_probs=112.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..+..++++++|++.++...++.|..||...    ... ...+......+..+++.++  +.++++...++.|..++.. 
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g----~~~-~~~~~~~~~~~~~i~~~~~--g~l~v~~~~~~~i~~~~~~-  133 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKKG----GFT-EYPLPQPDSGPYGITEGLN--GDIWFTQLNGDRIGKLTAD-  133 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTS----CEE-EEECSSTTCCEEEEEECST--TCEEEEETTTTEEEEECTT-
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCCC----CeE-EecCCCCCCCCccceECCC--CCEEEEccCCCeEEEECCC-
Confidence            5688999999999888777678899998762    222 1222223456889999888  8877776667889888875 


Q ss_pred             ccCCCcccEEE-EEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           90 EDAQPLQWKLC-KSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        90 ~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      +       +.. ..+......+..+++++  ++.+.++...++.|..++...       +... +....        ...
T Consensus       134 g-------~~~~~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~i~~~~~~g-------~~~~-~~~~~--------~~~  188 (300)
T 2qc5_A          134 G-------TIYEYDLPNKGSYPAFITLGS--DNALWFTENQNNSIGRITNTG-------KLEE-YPLPT--------NAA  188 (300)
T ss_dssp             S-------CEEEEECSSTTCCEEEEEECT--TSSEEEEETTTTEEEEECTTC-------CEEE-EECSS--------TTC
T ss_pred             C-------CEEEccCCCCCCCceeEEECC--CCCEEEEecCCCeEEEECCCC-------cEEE-eeCCC--------CCC
Confidence            3       222 22333345678899988  888666655577888888732       2211 11100        011


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .+..+++++++.     ++++....     +.|.+|+. ++.  ... ..+.   .+...+.+++++|++
T Consensus       189 ~~~~i~~d~~g~-----l~v~~~~~-----~~i~~~~~-~g~--~~~-~~~~---~~~~~~~~i~~d~~g  241 (300)
T 2qc5_A          189 APVGITSGNDGA-----LWFVEIMG-----NKIGRITT-TGE--ISE-YDIP---TPNARPHAITAGKNS  241 (300)
T ss_dssp             CEEEEEECTTSS-----EEEEETTT-----TEEEEECT-TCC--EEE-EECS---STTCCEEEEEECSTT
T ss_pred             CcceEEECCCCC-----EEEEccCC-----CEEEEEcC-CCc--EEE-EECC---CCCCCceEEEECCCC
Confidence            223788998875     44444444     78999987 222  111 1111   233468899999885

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.82  E-value=4.1e-06  Score=66.10  Aligned_cols=69  Identities=12%  Similarity=0.014  Sum_probs=52.0

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEE
Q 026295           14 SSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      .++|+|+|++|..+.          .++.|.+||..     +.+.+..+..-       ......+.|+|+  |++|+.+
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~-----t~~~~~~i~~~~~~~~~~g~~p~~~~~spD--G~~l~v~  142 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-----TFLPIADIELPDAPRFDVGPYSWMNANTPN--NADLLFF  142 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC-----CCcEEEEEECCCccccccCCCccceEECCC--CCEEEEE
Confidence            899999999998886          36789999997     44555544321       123458899999  9999887


Q ss_pred             ec--CCeEEEEEeeec
Q 026295           77 CS--DGSLLLWEEIVE   90 (240)
Q Consensus        77 ~~--d~~v~iwd~~~~   90 (240)
                      ..  +..|.++| ..+
T Consensus       143 n~~~~~~v~viD-~t~  157 (373)
T 2mad_H          143 QFAAGPAVGLVV-QGG  157 (373)
T ss_pred             ecCCCCeEEEEE-CCC
Confidence            74  47899999 765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.81  E-value=1.4e-07  Score=80.48  Aligned_cols=118  Identities=12%  Similarity=0.043  Sum_probs=76.2

Q ss_pred             cccceEEEEECCCCCEEEE-----EeCCCcEEEEeCCCCCCCcEEEEe-EeeecCccEEEEEEcCCCCCCEEEEEecCC-
Q 026295            8 LDKGTTSSSWNYCGQRLAT-----GSTDGTLSIFDSPDPSSSSFTCNL-KTKVHAGAILKVVWVPPEFGDAVACICSDG-   80 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~-----~~~d~~i~iw~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-   80 (240)
                      |...+..++|||||++||-     |+....|++||+..     ++.+. .+..  .....++|+ +  ++.|+.+..+. 
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-----g~~~~~~~~~--~k~~~~~Ws-D--g~~l~y~~~~~~  196 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-----KQPLETPLKD--VKFSGISWL-G--NEGFFYSSYDKP  196 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-----CSEEEEEEEE--EESCCCEEE-T--TTEEEEEESSCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-----CCCCccccCC--ceeccEEEe-C--CCEEEEEEecCc
Confidence            4446888999999999884     33345799999983     33222 2221  113578899 8  88888877764 


Q ss_pred             ------------eEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeC----CCcEEEEEecC
Q 026295           81 ------------SLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYS----DGHVKVYELLD  140 (240)
Q Consensus        81 ------------~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~----dg~v~iw~~~~  140 (240)
                                  .|.+|++.+...   .-..+..... +...+..+.|+|  +|++|+....    ++.|.++|+.+
T Consensus       197 ~~~~~~~~~~~~~v~~~~lgt~~~---~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~  268 (693)
T 3iuj_A          197 DGSELSARTDQHKVYFHRLGTAQE---DDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQ  268 (693)
T ss_dssp             C-------CCCCEEEEEETTSCGG---GCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTS
T ss_pred             ccccccccCCCcEEEEEECCCCcc---cceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCC
Confidence                        388888754311   0023333333 445577899999  9997755442    24788898875

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.80  E-value=9.4e-07  Score=67.65  Aligned_cols=163  Identities=6%  Similarity=-0.008  Sum_probs=97.7

Q ss_pred             ccccceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            7 TLDKGTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..........|+++|+ ++++...++.|..|+...    .   ...+..+...+..+.+.++  |+++++...++.|.+|
T Consensus        42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----~---~~~~~~~~~~~~gl~~d~d--G~l~v~~~~~~~v~~~  112 (305)
T 3dr2_A           42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----T---VDVLLDATAFTNGNAVDAQ--QRLVHCEHGRRAITRS  112 (305)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----C---EEEEEESCSCEEEEEECTT--SCEEEEETTTTEEEEE
T ss_pred             cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----C---EEEEeCCCCccceeeECCC--CCEEEEECCCCEEEEE
Confidence            3444567899999998 667777788999998742    2   2334445677899999998  9877666556789999


Q ss_pred             EeeeccCCCcccEEEEE-eee-ccccEEeEEEeecCCCcEEEE----EeC-------------CCcEEEEEecCcccccc
Q 026295           86 EEIVEDAQPLQWKLCKS-FES-TSTQVLDVQFGVSSTSLKLVA----AYS-------------DGHVKVYELLDPLILKN  146 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~~~l~~----~~~-------------dg~v~iw~~~~~~~~~~  146 (240)
                      +.. +.     ...+.. ... ....+..++++|  +|.++++    +..             .+.|..+|..+      
T Consensus       113 ~~~-g~-----~~~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~------  178 (305)
T 3dr2_A          113 DAD-GQ-----AHLLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG------  178 (305)
T ss_dssp             CTT-SC-----EEEEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS------
T ss_pred             CCC-CC-----EEEEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC------
Confidence            874 21     111111 111 113466799988  8987765    332             23455555533      


Q ss_pred             eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCC-CCCCeEEEEEeecC
Q 026295          147 WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT-PQLNSSKVWEFDEA  209 (240)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~-~~~~~i~iw~~~~~  209 (240)
                      .+.... . ...          ..+.++|+|++.     .|.++..... ...+.|++|++...
T Consensus       179 g~~~~~-~-~~~----------~p~gl~~spdg~-----~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          179 SPLQRM-A-DLD----------HPNGLAFSPDEQ-----TLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             CCCEEE-E-EES----------SEEEEEECTTSS-----EEEEEECCC---CCCEEEEEEEETT
T ss_pred             CcEEEE-e-cCC----------CCcceEEcCCCC-----EEEEEecCCcCCCCCEEEEEEecCC
Confidence            111111 1 111          113789999986     5666654200 00057999998754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.78  E-value=9.7e-07  Score=68.79  Aligned_cols=189  Identities=7%  Similarity=-0.019  Sum_probs=109.9

Q ss_pred             cccceEEEEECCCCCEEEEEeC-----CCcEEEEeCCCCCCCcEEEEeEeee------cCccEEEEEEcCCCCCCEEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGST-----DGTLSIFDSPDPSSSSFTCNLKTKV------HAGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      |-..+..++|+++|+++++-..     +..|.+||+.     +.+.+..+..      +...+..+++.++ .+..+++-
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~-----tg~~~~~~~~~~~~~~~~~~~~~v~vd~~-~g~~yvtd  138 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTL-----NNQLSRVIYLPPPITLSNSFVNDLAVDLI-HNFVYISD  138 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETT-----TTEEEEEEECCTTTSCTTCCCCEEEEETT-TTEEEEEE
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECC-----CCeEEEEEECChhhcccccccceEEEecC-CCEEEEEc
Confidence            4457899999999987665443     5789999987     4454544432      2234689999875 13444454


Q ss_pred             e---cCCeEEEEEeeeccCCCcccEEEEEeee-----------------------------ccccEEeEEEeecCCCcEE
Q 026295           77 C---SDGSLLLWEEIVEDAQPLQWKLCKSFES-----------------------------TSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        77 ~---~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~~~l  124 (240)
                      .   .++.|.+||+..+       +..+.+..                             ....+..|+|+|  ++..|
T Consensus       139 ~~~~~~~~i~v~d~~~g-------~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~l  209 (343)
T 2qe8_A          139 PAPDDKAALIRVDLQTG-------LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWL  209 (343)
T ss_dssp             CCSGGGCEEEEEETTTC-------CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEE
T ss_pred             CccCCCCeEEEEECCCC-------CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEE
Confidence            4   5789999998644       22221111                             012367899999  99888


Q ss_pred             EEEeCCCcEEEEEecCcc----cccceeEEeeee--cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCC
Q 026295          125 VAAYSDGHVKVYELLDPL----ILKNWQLQAEFQ--NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQL  198 (240)
Q Consensus       125 ~~~~~dg~v~iw~~~~~~----~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~  198 (240)
                      ..+..++. ++|.+....    .....+....+.  ....          ....+++++++.     ++++...+     
T Consensus       210 y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g----------~pdgia~d~~G~-----l~va~~~~-----  268 (343)
T 2qe8_A          210 YLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKP----------ICDGISIDKDHN-----IYVGDLAH-----  268 (343)
T ss_dssp             EEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECC----------SCSCEEECTTCC-----EEEEEGGG-----
T ss_pred             EEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCC----------CCceEEECCCCC-----EEEEccCC-----
Confidence            88777664 555553210    000000000000  1111          112788999876     66666666     


Q ss_pred             CeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          199 NSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       199 ~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +.|.+|+..++.  ......   . .+...+.+++|.|++
T Consensus       269 ~~V~~~d~~~G~--~~~~~~---~-~~~~~p~~va~~~~g  302 (343)
T 2qe8_A          269 SAIGVITSADRA--YKLLVT---D-EKLSWTDSFNFGSDG  302 (343)
T ss_dssp             TEEEEEETTTTE--EEEEEE---C-GGGSCEEEEEECTTS
T ss_pred             CeEEEEECCCCC--EEEEEE---C-CceecCCeeEECCCC
Confidence            899999973332  111111   1 123468999999875

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.75  E-value=6.1e-07  Score=70.67  Aligned_cols=117  Identities=9%  Similarity=-0.074  Sum_probs=88.5

Q ss_pred             EEEECCCCCEEEEEeC-----CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe----------c
Q 026295           14 SSSWNYCGQRLATGST-----DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC----------S   78 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~-----d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~   78 (240)
                      .....|+++++.....     ++.|.++|..     +.+.+..+..-..+ . +.++|+  |+.++.+.          .
T Consensus        37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~-----t~~v~~~I~vG~~P-~-va~spD--G~~lyVan~~~~r~~~G~~  107 (386)
T 3sjl_D           37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGE-----AGRVIGMIDGGFLP-N-PVVADD--GSFIAHASTVFSRIARGER  107 (386)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETT-----TTEEEEEEEECSSC-E-EEECTT--SSCEEEEEEEEEETTEEEE
T ss_pred             eeccCCCCCEEEEEcCcccCCCCEEEEEECC-----CCeEEEEEECCCCC-c-EEECCC--CCEEEEEcccccccccCCC
Confidence            3456789988888765     6799999998     66788888754454 4 999999  98777665          3


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeecc-------ccEEeEEEeecCCCcEEEEEeC--CCcEEEEEecCcccccceeE
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTS-------TQVLDVQFGVSSTSLKLVAAYS--DGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~  149 (240)
                      ++.|.+||..+.       +.+..+.-..       .....+.|+|  +|+++.+++.  ++.|.++|+.+      .+.
T Consensus       108 ~~~VsviD~~t~-------~v~~~I~v~~g~r~~~g~~P~~~a~sp--DGk~lyVan~~~~~~VsVID~~t------~~v  172 (386)
T 3sjl_D          108 TDYVEVFDPVTL-------LPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEG------KAF  172 (386)
T ss_dssp             EEEEEEECTTTC-------CEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTT------TEE
T ss_pred             CCEEEEEECCCC-------eEEEEEECCCccccccCCCCceEEEcC--CCCEEEEEEcCCCCeEEEEECCC------CcE
Confidence            578999999776       6666665321       2456789999  9998888874  68999999988      566


Q ss_pred             Eeeee
Q 026295          150 QAEFQ  154 (240)
Q Consensus       150 ~~~~~  154 (240)
                      +.++.
T Consensus       173 v~tI~  177 (386)
T 3sjl_D          173 KRMLD  177 (386)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66664

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.72  E-value=1.1e-05  Score=62.45  Aligned_cols=180  Identities=9%  Similarity=0.010  Sum_probs=101.0

Q ss_pred             eEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           12 TTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        12 v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      ..+.+|+|++ .++++...++.|..|+....     +. ..+. ....+.++.|+++  |.++++. . ..|.+||...+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-----~~-~~~~-~~~~v~~i~~~~d--g~l~v~~-~-~gl~~~d~~~g  119 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG-----RK-TVHA-LPFMGSALAKISD--SKQLIAS-D-DGLFLRDTATG  119 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT-----EE-EEEE-CSSCEEEEEEEET--TEEEEEE-T-TEEEEEETTTC
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC-----cE-EEEE-CCCcceEEEEeCC--CeEEEEE-C-CCEEEEECCCC
Confidence            4678999975 45666667789999998732     22 2222 3467999999998  8877654 3 45888887554


Q ss_pred             cCCCcccEEEEEeee--ccccEEeEEEeecCCCcEEEEEeCC----CcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           91 DAQPLQWKLCKSFES--TSTQVLDVQFGVSSTSLKLVAAYSD----GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~~d----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      .     +..+.....  ....+..+.++|  +|.++++...+    +...||.+.+      .+... +.....      
T Consensus       120 ~-----~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~~------g~~~~-~~~~~~------  179 (326)
T 2ghs_A          120 V-----LTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVAK------GKVTK-LFADIS------  179 (326)
T ss_dssp             C-----EEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEET------TEEEE-EEEEES------
T ss_pred             c-----EEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEeC------CcEEE-eeCCCc------
Confidence            1     122221111  124678899988  88865544321    2334444432      12211 111111      


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee--cC-CCC-cceeEeeecCCCCCCceEEEEEecCC
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD--EA-HNR-WLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~--~~-~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                          ..+.++|+|++.     .|..+...+    +.|.+|++.  ++ ... ......+.   ........+++++++
T Consensus       180 ----~~~~i~~s~dg~-----~lyv~~~~~----~~I~~~d~~~~~Gl~~~~~~~~~~~~---~~~~~p~gi~~d~~G  241 (326)
T 2ghs_A          180 ----IPNSICFSPDGT-----TGYFVDTKV----NRLMRVPLDARTGLPTGKAEVFIDST---GIKGGMDGSVCDAEG  241 (326)
T ss_dssp             ----SEEEEEECTTSC-----EEEEEETTT----CEEEEEEBCTTTCCBSSCCEEEEECT---TSSSEEEEEEECTTS
T ss_pred             ----ccCCeEEcCCCC-----EEEEEECCC----CEEEEEEcccccCCcccCceEEEECC---CCCCCCCeeEECCCC
Confidence                123789999986     555554322    899999986  33 211 01111121   122356677777765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.71  E-value=2.6e-06  Score=67.18  Aligned_cols=106  Identities=9%  Similarity=-0.092  Sum_probs=76.3

Q ss_pred             EECCCCCEEEEEeC--CC---cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe----------cCC
Q 026295           16 SWNYCGQRLATGST--DG---TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC----------SDG   80 (240)
Q Consensus        16 ~~s~~~~~l~~~~~--d~---~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~d~   80 (240)
                      ...|+++++.+...  ..   .|.++|..     +++.+..+..-..+  .+.++|+  |+.++.+.          .++
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~-----t~~~~~~i~~g~~p--~i~~spD--g~~lyv~n~~~~~~~rg~~~~   97 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAG-----SGSILGHVNGGFLP--NPVAAHS--GSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECC-----CCeEEEEecCCCCC--CeEECCC--CCEEEEEeccccccccCCCCC
Confidence            34578887777653  23   78999998     56677777643333  9999999  99888875          367


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeec-------cccEEeEEEeecCCCcEEEEEeC--CCcEEEEEecC
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFEST-------STQVLDVQFGVSSTSLKLVAAYS--DGHVKVYELLD  140 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~  140 (240)
                      .|.++|..+.       +.+..+...       ......+.|+|  +|++|++++.  ++.|.++| .+
T Consensus        98 ~v~viD~~t~-------~~~~~i~~~~~~~~~~g~~p~~~~~sp--DG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           98 YVEVFDPVTF-------LPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             eEEEEECCCC-------cEEEEEECCCccccccCCCccceEECC--CCCEEEEEecCCCCeEEEEE-CC
Confidence            8999998765       555554321       12345789999  9999988874  47899999 76

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.70  E-value=1.8e-09  Score=85.30  Aligned_cols=147  Identities=18%  Similarity=0.106  Sum_probs=79.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEE
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKL   99 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~   99 (240)
                      ++.++++++.|+.|+.||..     +++.+..+..  +.+.+..+..+  +..+++++.|+.|..||..++       +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~-----tG~~~W~~~~--~~~~s~p~~~~--g~~~v~~s~dg~l~a~d~~tG-------~~   71 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKR-----TGSIKWTLKE--DPVLQVPTHVE--EPAFLPDPNDGSLYTLGSKNN-------EG   71 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETT-----TCCEEEEEEC--CCSCCCC-------CCEEECTTTCCEEEC------------CC
T ss_pred             eCCEEEEEcCCCEEEEEECC-----CCCEEEEecC--CCceecceEcC--CCEEEEeCCCCEEEEEECCCC-------ce
Confidence            57899999999999999998     5566666654  44544445455  667777789999999999765       22


Q ss_pred             EEEeeecc-ccEEeEEEeecC-CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeC
Q 026295          100 CKSFESTS-TQVLDVQFGVSS-TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP  177 (240)
Q Consensus       100 ~~~~~~~~-~~v~~~~~~~~~-~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p  177 (240)
                      +..+..+. ..+.   -+|.. .+..+++++.|+.|..||..+      ++....+..+.              ...++|
T Consensus        72 ~w~~~~~~~~~~~---~sp~~~~~~~v~~g~~dg~v~a~D~~t------G~~~w~~~~~~--------------~~~~~p  128 (369)
T 2hz6_A           72 LTKLPFTIPELVQ---ASPCRSSDGILYMGKKQDIWYVIDLLT------GEKQQTLSSAF--------------ADSLSP  128 (369)
T ss_dssp             SEECSCCHHHHHT---TCSCC-----CCCCEEEEEEEEECCC--------------------------------------
T ss_pred             eeeeeccCccccc---cCceEecCCEEEEEeCCCEEEEEECCC------CcEEEEecCCC--------------cccccc
Confidence            22222211 1111   01111 234577888899999999987      34443333221              123455


Q ss_pred             CCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          178 QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       178 ~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                      .+.     .+++++.+     +.|+.||..+++..|..
T Consensus       129 ~~~-----~v~~~~~d-----g~v~a~d~~tG~~~W~~  156 (369)
T 2hz6_A          129 STS-----LLYLGRTE-----YTITMYDTKTRELRWNA  156 (369)
T ss_dssp             ---------EEEEEEE-----EEEECCCSSSSSCCCEE
T ss_pred             cCC-----EEEEEecC-----CEEEEEECCCCCEEEeE
Confidence            444     78888888     99999999998887765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.68  E-value=2.1e-06  Score=67.58  Aligned_cols=108  Identities=9%  Similarity=0.047  Sum_probs=78.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecC-------ccEEEEEEcCCCCCCEEEEE
Q 026295           14 SSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHA-------GAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~~~~~~~~l~s~   76 (240)
                      .++++|+|++|.++.          .++.|.+||..     +.+.+..+..-.       .....+.++|+  |++++.+
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~-----t~~v~~~I~v~~g~r~~~g~~P~~~a~spD--Gk~lyVa  154 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-----TLLPTADIELPDAPRFLVGTYPWMTSLTPD--GKTLLFY  154 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-----TCCEEEEEEETTCCCCCBSCCGGGEEECTT--SSEEEEE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC-----CCeEEEEEECCCccccccCCCCceEEEcCC--CCEEEEE
Confidence            499999999887775          35789999998     556666664311       23557899999  9988887


Q ss_pred             ec--CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           77 CS--DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        77 ~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..  ++.|.++|+.+.       +.+.++....  + ...+ |. ....+++.+.||++.+.++..
T Consensus       155 n~~~~~~VsVID~~t~-------~vv~tI~v~g--~-~~~~-P~-g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          155 QFSPAPAVGVVDLEGK-------AFKRMLDVPD--C-YHIF-PT-APDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             ECSSSCEEEEEETTTT-------EEEEEEECCS--E-EEEE-EE-ETTEEEEEETTSCEEEEECCS
T ss_pred             EcCCCCeEEEEECCCC-------cEEEEEECCC--c-ceee-cC-CCceeEEECCCCCEEEEECCC
Confidence            64  689999999876       7777775432  1 1223 42 345577888899999998865

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.59  E-value=1.4e-05  Score=59.24  Aligned_cols=187  Identities=11%  Similarity=0.084  Sum_probs=111.2

Q ss_pred             ccccc--eEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCe
Q 026295            7 TLDKG--TTSSSWNYCGQRLATGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGS   81 (240)
Q Consensus         7 ~h~~~--v~~~~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~   81 (240)
                      .|+..  ...+.|+ ++.++.+.+.+|  .|+++|+.     +++.+..+... .........+.  ++.|. ..-.++.
T Consensus        38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-----Tgkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~~~~  108 (262)
T 3nol_A           38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-----SGKTLQQIELG-KRYFGEGISDW--KDKIVGLTWKNGL  108 (262)
T ss_dssp             ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTT-----TCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred             cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECC-----CCcEEEEEecC-CccceeEEEEe--CCEEEEEEeeCCE
Confidence            45543  4788898 677777777766  89999998     56666666532 23333222223  44444 4445889


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc--ce
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI--DS  159 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~~  159 (240)
                      +.++|..+.       +.+.++...... ..+  ++  ++..|+....++.|.++|..+      .+....+....  .+
T Consensus       109 v~v~D~~t~-------~~~~ti~~~~eG-~gl--t~--dg~~L~~SdGs~~i~~iDp~T------~~v~~~I~V~~~g~~  170 (262)
T 3nol_A          109 GFVWNIRNL-------RQVRSFNYDGEG-WGL--TH--NDQYLIMSDGTPVLRFLDPES------LTPVRTITVTAHGEE  170 (262)
T ss_dssp             EEEEETTTC-------CEEEEEECSSCC-CCE--EE--CSSCEEECCSSSEEEEECTTT------CSEEEEEECEETTEE
T ss_pred             EEEEECccC-------cEEEEEECCCCc-eEE--ec--CCCEEEEECCCCeEEEEcCCC------CeEEEEEEeccCCcc
Confidence            999999776       777777753322 233  45  676666666678899999887      45555554321  11


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC-------CCCCCceEEE
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP-------EDRSDEVYAV  232 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~-------~~h~~~v~~v  232 (240)
                      +.       ..|.+.|. ++.     +++....+     +.|.+.|..+++.....  .+...       ..-.+-.+.|
T Consensus       171 ~~-------~lNELe~~-~G~-----lyan~w~~-----~~I~vIDp~tG~V~~~I--d~~~L~~~~~~~~~~~~vlNGI  230 (262)
T 3nol_A          171 LP-------ELNELEWV-DGE-----IFANVWQT-----NKIVRIDPETGKVTGII--DLNGILAEAGPLPSPIDVLNGI  230 (262)
T ss_dssp             CC-------CEEEEEEE-TTE-----EEEEETTS-----SEEEEECTTTCBEEEEE--ECTTGGGGSCSCCSSCCCEEEE
T ss_pred             cc-------ccceeEEE-CCE-----EEEEEccC-----CeEEEEECCCCcEEEEE--ECCcCccccccccCcCCceEEE
Confidence            11       12356776 442     55555455     88998888776532211  11100       0112346889


Q ss_pred             EEecCCCC
Q 026295          233 AWALNIGR  240 (240)
Q Consensus       233 ~~sp~~~~  240 (240)
                      ||+|+..|
T Consensus       231 A~dp~~~~  238 (262)
T 3nol_A          231 AWDKEHHR  238 (262)
T ss_dssp             EEETTTTE
T ss_pred             EEcCCCCE
Confidence            99998754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.59  E-value=1.5e-05  Score=59.48  Aligned_cols=189  Identities=7%  Similarity=-0.020  Sum_probs=112.8

Q ss_pred             cccc--ceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCCCCcEEEEeEeeecCc-cEEEEEEcCCCCCCEEEEEecCCe
Q 026295            7 TLDK--GTTSSSWNYCGQRLATGST--DGTLSIFDSPDPSSSSFTCNLKTKVHAG-AILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         7 ~h~~--~v~~~~~s~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .|+.  ....++|++++.+.++.+.  ++.|+++|+.     +++.+..+..-.. ....+.+..   +.+.++.-.++.
T Consensus        16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~-----tg~v~~~i~l~~~~fgeGi~~~g---~~lyv~t~~~~~   87 (266)
T 2iwa_A           16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQ-----TGKVENIHKMDDSYFGEGLTLLN---EKLYQVVWLKNI   87 (266)
T ss_dssp             ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETT-----TCCEEEEEECCTTCCEEEEEEET---TEEEEEETTCSE
T ss_pred             ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECC-----CCCEEEEEecCCCcceEEEEEeC---CEEEEEEecCCE
Confidence            3554  3578999998755555443  5799999998     5566666542111 223455532   344445556789


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc--ce
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI--DS  159 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~~  159 (240)
                      +.++|..+.       +.+.++... .. ....+++  ++..++++..+++|.++|..+      .+....+....  .+
T Consensus        88 v~viD~~t~-------~v~~~i~~g-~~-~g~glt~--Dg~~l~vs~gs~~l~viD~~t------~~v~~~I~Vg~~~~p  150 (266)
T 2iwa_A           88 GFIYDRRTL-------SNIKNFTHQ-MK-DGWGLAT--DGKILYGSDGTSILYEIDPHT------FKLIKKHNVKYNGHR  150 (266)
T ss_dssp             EEEEETTTT-------EEEEEEECC-SS-SCCEEEE--CSSSEEEECSSSEEEEECTTT------CCEEEEEECEETTEE
T ss_pred             EEEEECCCC-------cEEEEEECC-CC-CeEEEEE--CCCEEEEECCCCeEEEEECCC------CcEEEEEEECCCCcc
Confidence            999998765       777777633 11 1244566  777677777788999999877      45555554321  11


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC------CCC--CCceEE
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP------EDR--SDEVYA  231 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~------~~h--~~~v~~  231 (240)
                      +       ...+.+.|. ++.     +++....+     +.|.+-|..+++.....  .+.+.      ..+  ..-.+.
T Consensus       151 ~-------~~~nele~~-dg~-----lyvn~~~~-----~~V~vID~~tg~V~~~I--~~~g~~~~~~~~~~~~~~v~nG  210 (266)
T 2iwa_A          151 V-------IRLNELEYI-NGE-----VWANIWQT-----DCIARISAKDGTLLGWI--LLPNLRKKLIDEGFRDIDVLNG  210 (266)
T ss_dssp             C-------CCEEEEEEE-TTE-----EEEEETTS-----SEEEEEETTTCCEEEEE--ECHHHHHHHHHTTCTTCCCEEE
T ss_pred             c-------ccceeEEEE-CCE-----EEEecCCC-----CeEEEEECCCCcEEEEE--ECCCcccccccccccccCceEE
Confidence            1       112367777 442     45555455     89999998776532211  11110      001  124689


Q ss_pred             EEEecCCCC
Q 026295          232 VAWALNIGR  240 (240)
Q Consensus       232 v~~sp~~~~  240 (240)
                      |+|+|++.|
T Consensus       211 Ia~~~~~~~  219 (266)
T 2iwa_A          211 IAWDQENKR  219 (266)
T ss_dssp             EEEETTTTE
T ss_pred             EEEcCCCCE
Confidence            999999754

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=6.9e-06  Score=63.95  Aligned_cols=119  Identities=8%  Similarity=0.059  Sum_probs=76.3

Q ss_pred             cccceEEEEECCCCCEEEEEe--CCCcEEEEeCCCCCCCcEEEEe----EeeecCccEEEEEEcCCCCCCEEEEEec---
Q 026295            8 LDKGTTSSSWNYCGQRLATGS--TDGTLSIFDSPDPSSSSFTCNL----KTKVHAGAILKVVWVPPEFGDAVACICS---   78 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~--~d~~i~iw~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~l~s~~~---   78 (240)
                      .......++++++|+.+++..  .++.++||.+. .+  ......    ....+-..+..+++.++  +.++++-..   
T Consensus        15 ~~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g--~~~~~p~~~~~~~~~~~~p~gv~~d~~--g~L~v~D~g~~~   89 (343)
T 2qe8_A           15 LSLAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QD--GLIPFPPQSGNAIITFDTVLGIKSDGN--GIVWMLDNGNQS   89 (343)
T ss_dssp             ESSCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TT--EEEESCCCCSSCCCCCSCEEEEEECSS--SEEEEEECHHHH
T ss_pred             cCCCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CC--CeecCCCcccCcccceeEeeEEEEcCC--CcEEEEcCCCCc
Confidence            335788999999999988864  23435566654 11  211110    11234567999999998  876665433   


Q ss_pred             --CCeEEEEEeeeccCCCcccEEEEEeeec------cccEEeEEEeecCCC-cEEEEEe---CCCcEEEEEecC
Q 026295           79 --DGSLLLWEEIVEDAQPLQWKLCKSFEST------STQVLDVQFGVSSTS-LKLVAAY---SDGHVKVYELLD  140 (240)
Q Consensus        79 --d~~v~iwd~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~-~~l~~~~---~dg~v~iw~~~~  140 (240)
                        +..|.+||+.++       +.+..+...      ...+..++++|  ++ ..+++-.   .++.|.+||+.+
T Consensus        90 ~~~~~i~~~d~~tg-------~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~~~~~~~i~v~d~~~  154 (343)
T 2qe8_A           90 KSVPKLVAWDTLNN-------QLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPAPDDKAALIRVDLQT  154 (343)
T ss_dssp             TSCCEEEEEETTTT-------EEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECCSGGGCEEEEEETTT
T ss_pred             CCCCeEEEEECCCC-------eEEEEEECChhhcccccccceEEEec--CCCEEEEEcCccCCCCeEEEEECCC
Confidence              578999998765       555555421      23467899987  54 4445544   578899999875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.52  E-value=8.7e-06  Score=65.04  Aligned_cols=166  Identities=9%  Similarity=0.039  Sum_probs=96.7

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE--eeecCccE--EEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK--TKVHAGAI--LKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~--~~~h~~~v--~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ...+.+++++|++..|..+..++.|+.|+....   ....+..  ..++...-  ..++|+|. .+.++++-..++.|+.
T Consensus       218 ~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~---~~~~~~~~~~~g~~~~~P~~~ia~~p~-~g~lyv~d~~~~~I~~  293 (409)
T 3hrp_A          218 SGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQ---EVTLIKQLELSGSLGTNPGPYLIYYFV-DSNFYMSDQNLSSVYK  293 (409)
T ss_dssp             CSCCCBCEECTTSSEEEEECTTCEEEEEETTTC---CEEEEEECCCCSCCCCSSCCEEEEETT-TTEEEEEETTTTEEEE
T ss_pred             cCCcEEEEEeCCCCeEEEEECCCcEEEEECCCC---CEEEEecccccCCCCCCccccEEEeCC-CCEEEEEeCCCCEEEE
Confidence            356778999995555555777889999998743   2222211  11222222  38999995 1556666666788999


Q ss_pred             EEeeeccCCCcccEEEEEeeec---------------cccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCccccccee
Q 026295           85 WEEIVEDAQPLQWKLCKSFEST---------------STQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~  148 (240)
                      |+....         +..+.+.               -.....++++|  +|.++++-+ .++.|+.|++.+      +.
T Consensus       294 ~~~~g~---------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~--dG~lyvad~~~~~~I~~~~~~~------G~  356 (409)
T 3hrp_A          294 ITPDGE---------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE--DGNFYIVDGFKGYCLRKLDILD------GY  356 (409)
T ss_dssp             ECTTCC---------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT--TCCEEEEETTTTCEEEEEETTT------TE
T ss_pred             EecCCC---------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC--CCCEEEEeCCCCCEEEEEECCC------CE
Confidence            886532         1122211               13468899998  888777777 789999999654      22


Q ss_pred             EEeeeecccc-e--e--eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          149 LQAEFQNAID-S--V--TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       149 ~~~~~~~~~~-~--v--~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      . ..+..... .  .  .+..........++++|++.     ++++-...     +.|+.+++
T Consensus       357 v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~-----lyVad~~n-----~~Ir~i~~  408 (409)
T 3hrp_A          357 V-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGG-----YWIAEAWG-----KAIRKYAV  408 (409)
T ss_dssp             E-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSE-----EEEEESTT-----CEEEEEEE
T ss_pred             E-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCC-----EEEEECCC-----CeEEEEEe
Confidence            2 22222100 0  0  00001122345899999864     44444444     78887765

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.50  E-value=3e-05  Score=61.90  Aligned_cols=182  Identities=12%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             CCCCEEEE-EeCCCcEEEEeCCCCCCCcEEEEeEee------ec-CccEEEEEEcCCCCCCEEEEEecC------CeEEE
Q 026295           19 YCGQRLAT-GSTDGTLSIFDSPDPSSSSFTCNLKTK------VH-AGAILKVVWVPPEFGDAVACICSD------GSLLL   84 (240)
Q Consensus        19 ~~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~------~h-~~~v~~~~~~~~~~~~~l~s~~~d------~~v~i   84 (240)
                      +++++|+. +..++.|.|+|+..... ..+...++.      .. ...-..+...|+  | +++++..+      +.|.+
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~-~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pd--G-i~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPR-EPKIIKVIEPEEVKKVSGYSRLHTVHCGPD--A-IYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTT-SCEEEEEECHHHHHHHHCEEEEEEEEECSS--C-EEEEEEEETTSCSCCEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCC-CceeeeeechhhcccccCCCcccceeECCC--e-EEEEcCCCcCCCCCCeEEE
Confidence            77776655 55678999999852211 235555552      11 123456777898  8 66666555      68999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccc---cEEeEEEeecCCCcEEEEEe-------------------CCCcEEEEEecCcc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTST---QVLDVQFGVSSTSLKLVAAY-------------------SDGHVKVYELLDPL  142 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~l~~~~-------------------~dg~v~iw~~~~~~  142 (240)
                      .|..+.       +.+..+.....   .-..+-|+|  +++.+++..                   ...+|.+||+.+  
T Consensus       169 lD~~T~-------~v~~~~~~~~~~~~~~Yd~~~~p--~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--  237 (462)
T 2ece_A          169 LDHYSF-------EPLGKWEIDRGDQYLAYDFWWNL--PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--  237 (462)
T ss_dssp             ECTTTC-------CEEEECCSBCTTCCCCCCEEEET--TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--
T ss_pred             EECCCC-------eEEEEEccCCCCccccceEEECC--CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC--
Confidence            998765       67777753211   233577888  888777764                   368999999986  


Q ss_pred             cccceeEEeeeecc-cceeeccccccceeeeEEE--eCCCCCCCCceEEEEec-----CCCCCCCeEEEEEeecCCCCcc
Q 026295          143 ILKNWQLQAEFQNA-IDSVTMFRKASCISASISW--NPQKGENQGSSFVLGFN-----SDTPQLNSSKVWEFDEAHNRWL  214 (240)
Q Consensus       143 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~v~~--~p~~~~~~~~~l~~~~~-----dd~~~~~~i~iw~~~~~~~~~~  214 (240)
                          .+..+++... .....         ..+.|  +|++.     ++.++..     .+    +.|.+|..+.+  .|.
T Consensus       238 ----~k~~~tI~vg~~g~~P---------~~i~f~~~Pdg~-----~aYV~~e~~~~~Ls----s~V~v~~~d~g--~~~  293 (462)
T 2ece_A          238 ----RKRIHSLTLGEENRMA---------LELRPLHDPTKL-----MGFINMVVSLKDLS----SSIWLWFYEDG--KWN  293 (462)
T ss_dssp             ----TEEEEEEESCTTEEEE---------EEEEECSSTTCC-----EEEEEEEEETTTCC----EEEEEEEEETT--EEE
T ss_pred             ----CcEeeEEecCCCCCcc---------ceeEeeECCCCC-----EEEEEEeeeccCCC----ceEEEEEecCC--cee
Confidence                4556555542 11111         14544  99887     5666665     43    79999888753  343


Q ss_pred             eeEeeecCC----C-----------CCCceEEEEEecCCC
Q 026295          215 PVAELALPE----D-----------RSDEVYAVAWALNIG  239 (240)
Q Consensus       215 ~~~~~~~~~----~-----------h~~~v~~v~~sp~~~  239 (240)
                      ....+....    +           -.....+|.+|||+-
T Consensus       294 ~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr  333 (462)
T 2ece_A          294 AEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDK  333 (462)
T ss_dssp             EEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSC
T ss_pred             EEEEEeCCCccccccccccccccccCCCceeEEEECCCCC
Confidence            333221110    0           013578899999973

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.46  E-value=8.7e-06  Score=65.12  Aligned_cols=152  Identities=9%  Similarity=0.051  Sum_probs=97.4

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEE
Q 026295           14 SSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      .++++|+|++|.++.          .++.|.++|..     +.+.+..+..-       ......+.++|+  |++++.+
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~-----t~~vv~~I~v~g~~r~~~g~~P~~~~~spD--Gk~lyV~  194 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPV-----TFLPIADIELPDAPRFLVGTYQWMNALTPD--NKNLLFY  194 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-----TCCEEEEEEETTCCCCCBSCCGGGSEECTT--SSEEEEE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECC-----CCcEEEEEECCCccccccCCCcceEEEcCC--CCEEEEE
Confidence            799999999888876          36789999998     55666655421       123557899999  9988887


Q ss_pred             ec--CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEe---
Q 026295           77 CS--DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQA---  151 (240)
Q Consensus        77 ~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~---  151 (240)
                      ..  ++.|.+.|+...       +.+..+.-...    ....|. ....+++.+.||++.+.++.+.      +...   
T Consensus       195 n~~~~~~VsVID~~t~-------kvv~~I~v~g~----~~~~p~-g~~~~v~~~~dG~~~~V~~~~~------~v~~~~~  256 (426)
T 3c75_H          195 QFSPAPAVGVVDLEGK-------TFDRMLDVPDC----YHIFPA-SPTVFYMNCRDGSLARVDFADG------ETKVTNT  256 (426)
T ss_dssp             ECSSSCEEEEEETTTT-------EEEEEEECCSE----EEEEEE-ETTEEEEEETTSSEEEEECCTT------CCEEEEC
T ss_pred             ecCCCCeEEEEECCCC-------eEEEEEEcCCc----eeeccC-CCcEEEEEcCCCCEEEEECCCC------cEEEEee
Confidence            64  578999999776       77777764321    233442 1245667778898888888431      1111   


Q ss_pred             -eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          152 -EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       152 -~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                       .+.....++.         ..+.|.+++.     .++.....     +.|.+.|....
T Consensus       257 ~~~~v~~~p~~---------~~~~~~~dg~-----~~~~~s~~-----g~V~ViD~~~~  296 (426)
T 3c75_H          257 EVFHTEDELLI---------NHPAFSLRSG-----RLVWPTYT-----GKIFQADLTAE  296 (426)
T ss_dssp             CCCSCTTSCBC---------SCCEECTTTC-----EEEEEBTT-----SEEEEEEECSS
T ss_pred             eeeccCCCcee---------eEeeecCCCC-----EEEEEeCC-----CcEEEEeccCC
Confidence             1111111110         1356777765     44444556     89999998653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.45  E-value=8.9e-09  Score=81.25  Aligned_cols=159  Identities=8%  Similarity=0.009  Sum_probs=74.9

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC-CCCEEEEEecCCeEEEEEeeec
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE-FGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      +.+..+..++..+++++.|+.|+.||..     +++.+..+..+.....  .-+|.. .+..+++++.|+.|..||..++
T Consensus        40 ~~s~p~~~~g~~~v~~s~dg~l~a~d~~-----tG~~~w~~~~~~~~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG  112 (369)
T 2hz6_A           40 VLQVPTHVEEPAFLPDPNDGSLYTLGSK-----NNEGLTKLPFTIPELV--QASPCRSSDGILYMGKKQDIWYVIDLLTG  112 (369)
T ss_dssp             SCCCC-----CCEEECTTTCCEEEC----------CCSEECSCCHHHHH--TTCSCC-----CCCCEEEEEEEEECCC--
T ss_pred             ceecceEcCCCEEEEeCCCCEEEEEECC-----CCceeeeeeccCcccc--ccCceEecCCEEEEEeCCCEEEEEECCCC
Confidence            3344445567788888899999999986     3333333332211100  001110 1456777788999999999876


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                             +.+..+..+.    ...++|  .+..+++++.|+.|..||.++....  |.    +....  ..         
T Consensus       113 -------~~~w~~~~~~----~~~~~p--~~~~v~~~~~dg~v~a~d~~tG~~~--W~----~~~~~--~~---------  162 (369)
T 2hz6_A          113 -------EKQQTLSSAF----ADSLSP--STSLLYLGRTEYTITMYDTKTRELR--WN----ATYFD--YA---------  162 (369)
T ss_dssp             ---------------------------------EEEEEEEEEEECCCSSSSSCC--CE----EEEEE--EC---------
T ss_pred             -------cEEEEecCCC----cccccc--cCCEEEEEecCCEEEEEECCCCCEE--Ee----Eeccc--cc---------
Confidence                   4444444332    234566  6777888999999999999874222  22    21110  01         


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                       ...+.++.. . ...+++++.+     +.|+.||..+++..|..
T Consensus       163 -~~~~~~~~~-~-~~~v~~~~~d-----g~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          163 -ASLPEDDVD-Y-KMSHFVSNGD-----GLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             -CBCCCCCTT-C-CCCEEEEETS-----CEEEEECTTTCCEEEEE
T ss_pred             -CccccCCcc-c-cceEEEECCC-----CEEEEEECCCCcEEEEe
Confidence             222233210 0 0146677777     99999999888877754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.43  E-value=2.9e-05  Score=57.56  Aligned_cols=189  Identities=12%  Similarity=0.043  Sum_probs=111.8

Q ss_pred             cccc--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEE--EEEEcCCCCCCEEEEEecCCeE
Q 026295            7 TLDK--GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAIL--KVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         7 ~h~~--~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      .|+.  ....+.|+. +.+..+.+.+|.|+++|+.     +++.+..+ - .....  .+....   +.+....-.++.+
T Consensus        50 phd~~~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~-----Tgkv~~~~-l-~~~~FgeGit~~g---~~Ly~ltw~~~~v  118 (268)
T 3nok_A           50 PHATNAFTQGLVFHQ-GHFFESTGHQGTLRQLSLE-----SAQPVWME-R-LGNIFAEGLASDG---ERLYQLTWTEGLL  118 (268)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEETTTTEEEECCSS-----CSSCSEEE-E-CTTCCEEEEEECS---SCEEEEESSSCEE
T ss_pred             cCCCccccceEEEEC-CEEEEEcCCCCEEEEEECC-----CCcEEeEE-C-CCCcceeEEEEeC---CEEEEEEccCCEE
Confidence            3543  346788873 6677778888899999998     34444443 2 12332  355532   3444455568899


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      .++|..+.       +.+.++...... +.++  +  ++..|+.+..++.|.++|..+      .+....+.......  
T Consensus       119 ~V~D~~Tl-------~~~~ti~~~~eG-wGLt--~--Dg~~L~vSdGs~~l~~iDp~T------~~v~~~I~V~~~g~--  178 (268)
T 3nok_A          119 FTWSGMPP-------QRERTTRYSGEG-WGLC--Y--WNGKLVRSDGGTMLTFHEPDG------FALVGAVQVKLRGQ--  178 (268)
T ss_dssp             EEEETTTT-------EEEEEEECSSCC-CCEE--E--ETTEEEEECSSSEEEEECTTT------CCEEEEEECEETTE--
T ss_pred             EEEECCcC-------cEEEEEeCCCce-eEEe--c--CCCEEEEECCCCEEEEEcCCC------CeEEEEEEeCCCCc--
Confidence            99999776       888888753222 3444  4  667677777788999999887      55555554322110  


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEe-eec-----CCCCCCceEEEEEec
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAE-LAL-----PEDRSDEVYAVAWAL  236 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~-~~~-----~~~h~~~v~~v~~sp  236 (240)
                         ..-..|.+.|. ++.     +++....+     +.|.+-|..+++........ +..     ...-.+-.+.|||+|
T Consensus       179 ---~v~~lNeLe~~-dG~-----lyanvw~s-----~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp  244 (268)
T 3nok_A          179 ---PVELINELECA-NGV-----IYANIWHS-----SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP  244 (268)
T ss_dssp             ---ECCCEEEEEEE-TTE-----EEEEETTC-----SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT
T ss_pred             ---ccccccccEEe-CCE-----EEEEECCC-----CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC
Confidence               11122367776 432     55555455     88998888776532211110 100     011123568899999


Q ss_pred             CCCC
Q 026295          237 NIGR  240 (240)
Q Consensus       237 ~~~~  240 (240)
                      +..|
T Consensus       245 ~~~r  248 (268)
T 3nok_A          245 GSGR  248 (268)
T ss_dssp             TTCC
T ss_pred             CCCE
Confidence            8765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.43  E-value=1.4e-05  Score=63.93  Aligned_cols=113  Identities=11%  Similarity=-0.068  Sum_probs=83.1

Q ss_pred             CCCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe----------cCCeEE
Q 026295           19 YCGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC----------SDGSLL   83 (240)
Q Consensus        19 ~~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~d~~v~   83 (240)
                      ++++++.+....     +.|.++|..     +.+.+..+..-..+  .+.++|+  ++.++.+.          .++.|.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~-----t~~vv~~I~vG~~P--gia~SpD--gk~lyVan~~~~~~~~G~~~~~Vs  152 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGS-----TGRILGMTDGGFLP--HPVAAED--GSFFAQASTVFERIARGKRTDYVE  152 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETT-----TTEEEEEEEECSSC--EEEECTT--SSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECC-----CCEEEEEEECCCCC--ceEECCC--CCEEEEEeccccccccCCCCCEEE
Confidence            466766666553     689999998     67888888754455  8999999  88777765          367899


Q ss_pred             EEEeeeccCCCcccEEEEEeeec-------cccEEeEEEeecCCCcEEEEEeC--CCcEEEEEecCcccccceeEEeeee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFEST-------STQVLDVQFGVSSTSLKLVAAYS--DGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      ++|..+.       +.+..+.-.       ......+.|+|  +|++++++..  ++.|.+.|+.+      .+.+.++.
T Consensus       153 viD~~t~-------~vv~~I~v~g~~r~~~g~~P~~~~~sp--DGk~lyV~n~~~~~~VsVID~~t------~kvv~~I~  217 (426)
T 3c75_H          153 VFDPVTF-------LPIADIELPDAPRFLVGTYQWMNALTP--DNKNLLFYQFSPAPAVGVVDLEG------KTFDRMLD  217 (426)
T ss_dssp             EECTTTC-------CEEEEEEETTCCCCCBSCCGGGSEECT--TSSEEEEEECSSSCEEEEEETTT------TEEEEEEE
T ss_pred             EEECCCC-------cEEEEEECCCccccccCCCcceEEEcC--CCCEEEEEecCCCCeEEEEECCC------CeEEEEEE
Confidence            9998776       666666532       12346789999  9999888874  57899999987      56655554


Q ss_pred             c
Q 026295          155 N  155 (240)
Q Consensus       155 ~  155 (240)
                      .
T Consensus       218 v  218 (426)
T 3c75_H          218 V  218 (426)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.41  E-value=0.00018  Score=52.79  Aligned_cols=186  Identities=8%  Similarity=0.017  Sum_probs=111.1

Q ss_pred             cccc--ceEEEEECCCCCEEEEEeCC--CcEEEEeCCCCCCCcEEEEeEeeecCccEE--EEEEcCCCCCCEEEEEecCC
Q 026295            7 TLDK--GTTSSSWNYCGQRLATGSTD--GTLSIFDSPDPSSSSFTCNLKTKVHAGAIL--KVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         7 ~h~~--~v~~~~~s~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~--~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +|+.  ....+.|+. +.+..+.+.+  ..|+++|+.     +++.+..+... ....  .+....   +.+....-.++
T Consensus        16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~-----tgkv~~~~~l~-~~~fgeGi~~~~---~~ly~ltw~~~   85 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLE-----TGRILQRAEVP-PPYFGAGIVAWR---DRLIQLTWRNH   85 (243)
T ss_dssp             ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETT-----TCCEEEEEECC-TTCCEEEEEEET---TEEEEEESSSS
T ss_pred             CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECC-----CCCEEEEEeCC-CCcceeEEEEeC---CEEEEEEeeCC
Confidence            4654  466899987 5666666665  489999998     55666666532 2222  334322   34444555688


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc--c
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI--D  158 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~--~  158 (240)
                      .+.++|..+.       +.+.++...... +.+  .+  ++..|..+..+++|.++|..+      .+....+....  .
T Consensus        86 ~v~v~D~~tl-------~~~~ti~~~~~G-wgl--t~--dg~~L~vSdgs~~l~~iDp~t------~~~~~~I~V~~~g~  147 (243)
T 3mbr_X           86 EGFVYDLATL-------TPRARFRYPGEG-WAL--TS--DDSHLYMSDGTAVIRKLDPDT------LQQVGSIKVTAGGR  147 (243)
T ss_dssp             EEEEEETTTT-------EEEEEEECSSCC-CEE--EE--CSSCEEEECSSSEEEEECTTT------CCEEEEEECEETTE
T ss_pred             EEEEEECCcC-------cEEEEEeCCCCc-eEE--ee--CCCEEEEECCCCeEEEEeCCC------CeEEEEEEEccCCc
Confidence            9999999776       888888754322 344  44  666666667788999999887      45555554322  1


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecC--------CCCCCceE
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALP--------EDRSDEVY  230 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~--------~~h~~~v~  230 (240)
                      ++.       ..|.+.|. ++.     +++....+     ..|.+-|..++......  .+.+.        ..-.+-.+
T Consensus       148 ~~~-------~lNeLe~~-~G~-----lyanvw~s-----~~I~vIDp~tG~V~~~i--dl~~l~~~~~~~~~~~~~vlN  207 (243)
T 3mbr_X          148 PLD-------NLNELEWV-NGE-----LLANVWLT-----SRIARIDPASGKVVAWI--DLQALVPDADALTDSTNDVLN  207 (243)
T ss_dssp             ECC-------CEEEEEEE-TTE-----EEEEETTT-----TEEEEECTTTCBEEEEE--ECGGGSTTTTSCCCTTSSCEE
T ss_pred             ccc-------cceeeEEe-CCE-----EEEEECCC-----CeEEEEECCCCCEEEEE--ECCcCccccccccCCcCCceE
Confidence            111       12356665 332     55555455     78888888776532111  11110        01123568


Q ss_pred             EEEEecCCCC
Q 026295          231 AVAWALNIGR  240 (240)
Q Consensus       231 ~v~~sp~~~~  240 (240)
                      .|||+|+..|
T Consensus       208 GIA~d~~~~~  217 (243)
T 3mbr_X          208 GIAFDAEHDR  217 (243)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEcCCCCE
Confidence            8999998754

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.41  E-value=3.2e-05  Score=60.71  Aligned_cols=68  Identities=10%  Similarity=0.025  Sum_probs=52.3

Q ss_pred             EEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeec-------CccEEEEEEcCCCCCCEEEEE
Q 026295           14 SSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVH-------AGAILKVVWVPPEFGDAVACI   76 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~~l~s~   76 (240)
                      .+.++|+++++.++.          .++.|.+||..     +++.+.++...       ......+.++|+  |++++.+
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~-----T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD--Gk~lyVa  141 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-----TFLPIADIELPDAPRFSVGPRVHIIGNCAS--SACLLFF  141 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-----TCCEEEEEEETTSCSCCBSCCTTSEEECTT--SSCEEEE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECC-----CCCEEEEEECCCccccccCCCcceEEEcCC--CCEEEEE
Confidence            699999999888886          36889999998     66777777643       123568999999  9888887


Q ss_pred             ec--CCeEEE--EEee
Q 026295           77 CS--DGSLLL--WEEI   88 (240)
Q Consensus        77 ~~--d~~v~i--wd~~   88 (240)
                      ..  +..|.+  +|..
T Consensus       142 n~~~~~~v~V~~iD~~  157 (368)
T 1mda_H          142 LFGSSAAAGLSVPGAS  157 (368)
T ss_dssp             ECSSSCEEEEEETTTE
T ss_pred             ccCCCCeEEEEEEchh
Confidence            64  356777  7764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.26  E-value=6.5e-05  Score=64.10  Aligned_cols=70  Identities=9%  Similarity=0.056  Sum_probs=47.7

Q ss_pred             EEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCCCCcEEEEeEeee--cC-------ccEEEEEEc
Q 026295           14 SSSWNYCGQRLATGSTDGT-------------------LSIFDSPDPSSSSFTCNLKTKV--HA-------GAILKVVWV   65 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~-------------------i~iw~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~   65 (240)
                      .++++|+..++..+..++.                   |..+|..     +++.+-.++.  |.       .++......
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~-----TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~  313 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNAD-----TGEYVWHYQTTPGDAWDYTATQHMILAELP  313 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETT-----TCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEcc-----CCceeEeeecCCcccccccCCCCcEEEeec
Confidence            5788998899999888764                   8889988     5566665553  21       111111221


Q ss_pred             CCCCCC---EEEEEecCCeEEEEEeeec
Q 026295           66 PPEFGD---AVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        66 ~~~~~~---~l~s~~~d~~v~iwd~~~~   90 (240)
                      .+  |.   .++.++.+|.+.++|..++
T Consensus       314 ~~--G~~~~~v~~~~~~G~l~~lD~~tG  339 (689)
T 1yiq_A          314 ID--GKPRKVLMQAPKNGFFYVIDRATG  339 (689)
T ss_dssp             ET--TEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cC--CcEEEEEEEECCCCeEEEEECCCC
Confidence            23  44   6888889999999998766

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.21  E-value=0.00016  Score=61.79  Aligned_cols=182  Identities=10%  Similarity=0.087  Sum_probs=102.0

Q ss_pred             EEEEECCCCCEEEEEeCCCc-------------EEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEec
Q 026295           13 TSSSWNYCGQRLATGSTDGT-------------LSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICS   78 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~-------------i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~   78 (240)
                      ..++|+ ||+.|+.++.+..             |++|++..... ...++..... |...+..+.|+|+  |++|+....
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~-~~~~v~~~~~~~~~~~~~~~~SpD--g~~l~~~~~  253 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE-DDRLVFGAIPAQHHRYVGATVTED--DRFLLISAA  253 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG-GCEEEESCSGGGCCSEEEEEECTT--SCEEEEEEE
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc-cceEEEecCCCCCeEEEEEEEcCC--CCEEEEEEc
Confidence            567999 9999999888743             88998863311 1234443344 4555788999999  987754332


Q ss_pred             ----CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCC---CcEEEEEecCcccccceeEE
Q 026295           79 ----DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSD---GHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        79 ----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d---g~v~iw~~~~~~~~~~~~~~  150 (240)
                          ...|.++|+..++.      ....+..+....... |++  ++..|+ ....+   +.|..+++.++.. ..++  
T Consensus       254 ~~~~~~~i~~~d~~~~~~------~~~~l~~~~~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~--  321 (693)
T 3iuj_A          254 NSTSGNRLYVKDLSQENA------PLLTVQGDLDADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWR--  321 (693)
T ss_dssp             SSSSCCEEEEEETTSTTC------CCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCG-GGCE--
T ss_pred             cCCCCcEEEEEECCCCCC------ceEEEeCCCCceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCc-cccE--
Confidence                24788888865421      223334344444444 555  555444 44433   5788888876321 1122  


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCC--eEEEEEeecCCCCcceeEeeecCCCCCCc
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLN--SSKVWEFDEAHNRWLPVAELALPEDRSDE  228 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~--~i~iw~~~~~~~~~~~~~~~~~~~~h~~~  228 (240)
                       .+..+...            .+.|+|++.     .|+....++    +  .|++|++....     ...+..  .....
T Consensus       322 -~l~~~~~~------------~~~~s~~g~-----~lv~~~~~~----g~~~l~~~d~~g~~-----~~~l~~--p~~~~  372 (693)
T 3iuj_A          322 -DLIPERQQ------------VLTVHSGSG-----YLFAEYMVD----ATARVEQFDYEGKR-----VREVAL--PGLGS  372 (693)
T ss_dssp             -EEECCCSS------------CEEEEEETT-----EEEEEEEET----TEEEEEEECTTSCE-----EEEECC--SSSSE
T ss_pred             -EEecCCCC------------EEEEEEECC-----EEEEEEEEC----CeeEEEEEECCCCe-----eEEeec--CCCce
Confidence             22222211            227888876     566665542    5  57777765321     122221  12235


Q ss_pred             eEEEEEecCCC
Q 026295          229 VYAVAWALNIG  239 (240)
Q Consensus       229 v~~v~~sp~~~  239 (240)
                      +..++++|++.
T Consensus       373 ~~~~~~~~d~~  383 (693)
T 3iuj_A          373 VSGFNGKHDDP  383 (693)
T ss_dssp             EEECCCCTTCS
T ss_pred             EEeeecCCCCC
Confidence            66777777654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.16  E-value=0.00046  Score=57.11  Aligned_cols=186  Identities=10%  Similarity=0.028  Sum_probs=108.5

Q ss_pred             CCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEE-c-CCCCCCEEEEEec-----------------
Q 026295           20 CGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVW-V-PPEFGDAVACICS-----------------   78 (240)
Q Consensus        20 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~-~-~~~~~~~l~s~~~-----------------   78 (240)
                      ||++|..+..+ ..|.+.|+.     +.++...+.- .......+.+ . |+  +.+++.++.                 
T Consensus       100 DG~~lfVnd~~~~rVavIdl~-----t~~~~~ii~ip~g~~phg~~~~~~p~--~~~v~~~~~~~~p~~~dg~~l~~~~~  172 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCD-----VMKCDAILEIPNAKGIHGLRPQKWPR--SNYVFCNGEDETPLVNDGTNMEDVAN  172 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETT-----TTEEEEEEECSSCCSEEEEEECCSSB--CSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred             CCCEEEEEcCCCCEEEEEECC-----CceEeeEEeCCCCCCCcceeeeecCC--CcEEEEecccccccCCCCcccccccc
Confidence            88877776654 569999998     6666664431 2245778887 4 77  888887742                 


Q ss_pred             -CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC---------------cEEEEEecCcc
Q 026295           79 -DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG---------------HVKVYELLDPL  142 (240)
Q Consensus        79 -d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---------------~v~iw~~~~~~  142 (240)
                       ++.+.+.|..+.       +...++.-.. ....++++|  +|.++++.+.+.               .|.+.|.....
T Consensus       173 ~~~~vtvID~~t~-------~v~~qI~Vgg-~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~  242 (595)
T 1fwx_A          173 YVNVFTAVDADKW-------EVAWQVLVSG-NLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE  242 (595)
T ss_dssp             EEEEEEEEETTTT-------EEEEEEEESS-CCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred             cCceEEEEECCCC-------eEEEEEEeCC-CccceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence             346778787654       6666665322 456788988  899888888653               35566543211


Q ss_pred             c---ccceeE---Eeeeeccc--c-e---eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          143 I---LKNWQL---QAEFQNAI--D-S---VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       143 ~---~~~~~~---~~~~~~~~--~-~---v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      .   ..+...   +..+....  . .   .-+.++   ....+.++|++.     ++++++..+    ..|.++|+.+..
T Consensus       243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk-----~v~V~~~~s----~~VsVid~~~~~  310 (595)
T 1fwx_A          243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKK-----HLCVAGKLS----PTVTVLDVTRFD  310 (595)
T ss_dssp             HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSS-----EEEEECTTS----SBEEEEEGGGHH
T ss_pred             EeccCCCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEEcCCCC-----EEEEeCCCC----CeEEEEECcccc
Confidence            0   000000   11111111  0 0   000111   223789999997     565555443    899999998531


Q ss_pred             C--------CcceeEeeecCCCCCCceEEEEEecCC
Q 026295          211 N--------RWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       211 ~--------~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      .        ......+++    -....+.++|+||+
T Consensus       311 ~~~~~~l~~~~~v~~~v~----vG~gP~h~aF~~dG  342 (595)
T 1fwx_A          311 AVFYENADPRSAVVAEPE----LGLGPLHTAFDGRG  342 (595)
T ss_dssp             HHHHSCCCGGGGEEECCB----CCSCEEEEEECTTS
T ss_pred             cccccccCcccceEEEcC----CCCCcceEEECCCC
Confidence            0        111223332    22368999999987

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.16  E-value=3.3e-05  Score=63.77  Aligned_cols=162  Identities=10%  Similarity=0.067  Sum_probs=101.7

Q ss_pred             cceEEEEE-C-CCCCEEEEEe------------------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCC
Q 026295           10 KGTTSSSW-N-YCGQRLATGS------------------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEF   69 (240)
Q Consensus        10 ~~v~~~~~-s-~~~~~l~~~~------------------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~   69 (240)
                      .....+++ + |+++++.+++                  .++.+.+.|..     +.+.+.++..- +....+..+|+  
T Consensus       134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~-----t~~v~~qI~Vg-g~pd~~~~spd--  205 (595)
T 1fwx_A          134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD-----KWEVAWQVLVS-GNLDNCDADYE--  205 (595)
T ss_dssp             CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT-----TTEEEEEEEES-SCCCCEEECSS--
T ss_pred             CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC-----CCeEEEEEEeC-CCccceEECCC--
Confidence            45778888 5 8999998885                  33578888888     55666666532 23456778898  


Q ss_pred             CCEEEEEecCC---------------eEEEE-----------------------EeeeccCCCcccEE-EEEeeeccccE
Q 026295           70 GDAVACICSDG---------------SLLLW-----------------------EEIVEDAQPLQWKL-CKSFESTSTQV  110 (240)
Q Consensus        70 ~~~l~s~~~d~---------------~v~iw-----------------------d~~~~~~~~~~~~~-~~~~~~~~~~v  110 (240)
                      |.++++.+.+.               .|.+.                       |.....     .+. +..+.. ....
T Consensus       206 Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~-----~~~~~~~Ipv-g~~P  279 (595)
T 1fwx_A          206 GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA-----SSLFTRYIPI-ANNP  279 (595)
T ss_dssp             SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG-----CCSSEEEEEE-ESSC
T ss_pred             CCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC-----CceeEEEEec-CCCc
Confidence            88888877553               23333                       333210     022 233332 1345


Q ss_pred             EeEEEeecCCCcEEEEEe-CCCcEEEEEecCccccc------ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCC
Q 026295          111 LDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILK------NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQ  183 (240)
Q Consensus       111 ~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~  183 (240)
                      .++.++|  +|+++++++ .+.+|.++|+.+.....      ......++....           ....++|+|++.   
T Consensus       280 hGv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~-----------gP~h~aF~~dG~---  343 (595)
T 1fwx_A          280 HGCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGL-----------GPLHTAFDGRGN---  343 (595)
T ss_dssp             CCEEECT--TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCS-----------CEEEEEECTTSE---
T ss_pred             eEEEEcC--CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCC-----------CcceEEECCCCe---
Confidence            6789999  999876665 67899999998632110      011222222222           223789999984   


Q ss_pred             CceEEEEecCCCCCCCeEEEEEeec
Q 026295          184 GSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       184 ~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                        ..++..-|     +.|.+|++..
T Consensus       344 --aY~t~~ld-----sqV~kwdi~~  361 (595)
T 1fwx_A          344 --AYTSLFLD-----SQVVKWNIED  361 (595)
T ss_dssp             --EEEEETTT-----TEEEEEEHHH
T ss_pred             --EEEEEecC-----CcEEEEEhhH
Confidence              66666666     9999999876

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.09  E-value=0.00017  Score=61.36  Aligned_cols=71  Identities=8%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             EEEEECCCCCEEEEEeCCC-------------------cEEEEeCCCCCCCcEEEEeEeee--cC-------ccEEEEEE
Q 026295           13 TSSSWNYCGQRLATGSTDG-------------------TLSIFDSPDPSSSSFTCNLKTKV--HA-------GAILKVVW   64 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~-------------------~i~iw~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~   64 (240)
                      ..+++++++.++..+..++                   .|..+|..     +++.+-.++.  |.       .....+..
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~-----TG~~~W~~~~~~~d~wd~~~~~~p~l~~~  320 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD-----TGKYKWHYQETPGDNWDYTSTQPMILADI  320 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT-----TCCEEEEEESSTTCCSCCCCCSCCEEEEE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC-----CCCEEEEEecCCCcccccccCCCcEEEec
Confidence            3578899998888887664                   48888887     5566655542  21       11112222


Q ss_pred             cCCCCC---CEEEEEecCCeEEEEEeeec
Q 026295           65 VPPEFG---DAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        65 ~~~~~~---~~l~s~~~d~~v~iwd~~~~   90 (240)
                      ..+  |   ..++.++.+|.|.++|..++
T Consensus       321 ~~d--G~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          321 KIA--GKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             EET--TEEEEEEEECCTTSEEEEEETTTC
T ss_pred             ccC--CcEeeEEEEECCCCEEEEEECCCC
Confidence            234  6   67888899999999998776

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.07  E-value=0.00089  Score=49.85  Aligned_cols=113  Identities=4%  Similarity=-0.082  Sum_probs=67.5

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEee
Q 026295           11 GTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEI   88 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~   88 (240)
                      ....++|+++++.|..+ ..++.|..++.....     ....+.........+++.+.  +..+. +-...+.|.++++.
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-----~~~~~~~~~~~p~~ia~d~~--~~~lyv~d~~~~~I~~~~~~  109 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-----PTTIIRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVAKMD  109 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-----CEEEECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEEETT
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-----cEEEEECCCCCccEEEEEec--CCeEEEEECCCCEEEEEEcC
Confidence            46789999976655544 456789999987431     11112222246789999886  55444 44456788888875


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC---CCcEEEEEec
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS---DGHVKVYELL  139 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~  139 (240)
                      ....     ..+  ..........++++|  ++..|..+..   .+.|..+++.
T Consensus       110 g~~~-----~~~--~~~~~~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A          110 GTQR-----RVL--FDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             SCSC-----EEE--ECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCCE-----EEE--EECCCCCccEEEEee--CCCEEEEEECCCCCcEEEEEecC
Confidence            3210     111  111224568899988  6555555443   3577777764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.98  E-value=0.0024  Score=47.32  Aligned_cols=203  Identities=11%  Similarity=0.099  Sum_probs=112.1

Q ss_pred             chhcccccceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            3 KAVATLDKGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      +.|.+-.+.+..++|+|+++.| ++...++.|...|...      +.+..+.- -....-.|++.++  +.++++.-.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g------~v~~~i~l~g~~D~EGIa~~~~--g~~~vs~E~~~   91 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG------DLIRTIPLDFVKDLETIEYIGD--NQFVISDERDY   91 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC------CEEEEEECSSCSSEEEEEECST--TEEEEEETTTT
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC------CEEEEEecCCCCChHHeEEeCC--CEEEEEECCCC
Confidence            4566666789999999987654 4567778888888762      23333321 1245778888877  77666655667


Q ss_pred             eEEEEEeeeccCCCcccEEEEEee------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFE------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      .+.++++.....    ...+....      ........++|+|  .+..|.++.......+|.+.............. .
T Consensus        92 ~l~~~~v~~~~~----i~~~~~~~~~~~~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~-~  164 (255)
T 3qqz_A           92 AIYVISLTPNSE----VKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKD-K  164 (255)
T ss_dssp             EEEEEEECTTCC----EEEEEEEECCCSSCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEEC-H
T ss_pred             cEEEEEcCCCCe----eeeeeeeccccccccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecc-h
Confidence            888888754311    01122221      1234568999999  776666666655667777652100000111100 0


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCC------CCc
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDR------SDE  228 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h------~~~  228 (240)
                      ......     .......++++|....    +++.....     +.+.++|....   ......|.  .+.      -..
T Consensus       165 ~~~~~~-----~~~d~S~l~~dp~tg~----lliLS~~s-----~~L~~~d~~g~---~~~~~~L~--~g~~~l~~~~~q  225 (255)
T 3qqz_A          165 ALQRQF-----TLDDVSGAEFNQQKNT----LLVLSHES-----RALQEVTLVGE---VIGEMSLT--KGSRGLSHNIKQ  225 (255)
T ss_dssp             HHHHTC-----CSSCCCEEEEETTTTE----EEEEETTT-----TEEEEECTTCC---EEEEEECS--TTGGGCSSCCCS
T ss_pred             hhcccc-----ccCCceeEEEcCCCCe----EEEEECCC-----CeEEEEcCCCC---EEEEEEcC--CccCCcccccCC
Confidence            000000     0112238999998762    55555554     88888886543   11122222  111      114


Q ss_pred             eEEEEEecCCC
Q 026295          229 VYAVAWALNIG  239 (240)
Q Consensus       229 v~~v~~sp~~~  239 (240)
                      --.|+|.|++.
T Consensus       226 pEGia~d~~G~  236 (255)
T 3qqz_A          226 AEGVAMDASGN  236 (255)
T ss_dssp             EEEEEECTTCC
T ss_pred             CCeeEECCCCC
Confidence            57789998874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.88  E-value=0.0017  Score=48.50  Aligned_cols=157  Identities=10%  Similarity=-0.009  Sum_probs=95.9

Q ss_pred             CCCEEEE-EeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295           20 CGQRLAT-GSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        20 ~~~~l~~-~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      +++.|.. .-.++.+.++|..     +.+.+.++..-...-..++  ++  |..++.+..++.|.+.|..+.       +
T Consensus        74 ~g~~lyv~t~~~~~v~viD~~-----t~~v~~~i~~g~~~g~glt--~D--g~~l~vs~gs~~l~viD~~t~-------~  137 (266)
T 2iwa_A           74 LNEKLYQVVWLKNIGFIYDRR-----TLSNIKNFTHQMKDGWGLA--TD--GKILYGSDGTSILYEIDPHTF-------K  137 (266)
T ss_dssp             ETTEEEEEETTCSEEEEEETT-----TTEEEEEEECCSSSCCEEE--EC--SSSEEEECSSSEEEEECTTTC-------C
T ss_pred             eCCEEEEEEecCCEEEEEECC-----CCcEEEEEECCCCCeEEEE--EC--CCEEEEECCCCeEEEEECCCC-------c
Confidence            3544444 4466899999998     6677777753212223344  46  665666666789999998665       5


Q ss_pred             EEEEeeec-----cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc--e-eecccccccee
Q 026295           99 LCKSFEST-----STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID--S-VTMFRKASCIS  170 (240)
Q Consensus        99 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~-v~~~~~~~~~~  170 (240)
                      .+..+.-.     -.....+.|.   ++..++....++.|.+.|..+      ++.+..+.....  . +..........
T Consensus       138 v~~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~t------g~V~~~I~~~g~~~~~~~~~~~~~~v~  208 (266)
T 2iwa_A          138 LIKKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKD------GTLLGWILLPNLRKKLIDEGFRDIDVL  208 (266)
T ss_dssp             EEEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTT------CCEEEEEECHHHHHHHHHTTCTTCCCE
T ss_pred             EEEEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCC------CcEEEEEECCCcccccccccccccCce
Confidence            55555421     1235677775   566555555678999999987      566666643210  0 00000001122


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      +.++|+|++..    +++++...     +.|...++....
T Consensus       209 nGIa~~~~~~~----lfVTgk~~-----~~v~~i~l~~~~  239 (266)
T 2iwa_A          209 NGIAWDQENKR----IFVTGKLW-----PKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEEETTTTE----EEEEETTC-----SEEEEEEEEECC
T ss_pred             EEEEEcCCCCE----EEEECCCC-----CeEEEEEEeccc
Confidence            48999999862    66666666     899999887643

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.87  E-value=0.00061  Score=58.03  Aligned_cols=76  Identities=17%  Similarity=0.193  Sum_probs=50.0

Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +.|..||+.++       +.+-.+.. ...+....+..  .+..++.++.||.+++||.++      ++.+..+......
T Consensus       457 g~l~A~D~~tG-------~~~W~~~~-~~~~~~g~~~~--~g~~v~~g~~dg~l~a~D~~t------G~~lw~~~~~~~~  520 (677)
T 1kb0_A          457 GRLLAWDPVAQ-------KAAWSVEH-VSPWNGGTLTT--AGNVVFQGTADGRLVAYHAAT------GEKLWEAPTGTGV  520 (677)
T ss_dssp             EEEEEEETTTT-------EEEEEEEE-SSSCCCCEEEE--TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCC
T ss_pred             cEEEEEeCCCC-------cEEeecCC-CCCCcCcceEe--CCCEEEEECCCCcEEEEECCC------CceeeeeeCCCCc
Confidence            67888888766       55554443 23344555666  677788899999999999998      5666666543221


Q ss_pred             eeccccccceeeeEEEeCCCC
Q 026295          160 VTMFRKASCISASISWNPQKG  180 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~  180 (240)
                      ..         .-+.|.+++.
T Consensus       521 ~~---------~p~~y~~~G~  532 (677)
T 1kb0_A          521 VA---------APSTYMVDGR  532 (677)
T ss_dssp             CS---------CCEEEEETTE
T ss_pred             cc---------CCEEEEeCCE
Confidence            11         1566777764

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.81  E-value=0.005  Score=45.70  Aligned_cols=178  Identities=7%  Similarity=-0.057  Sum_probs=97.6

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---CCeEEEE
Q 026295           10 KGTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---DGSLLLW   85 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---d~~v~iw   85 (240)
                      .....+++++++..|..+ ...+.|.++++...   ..+.+  ..........+++.|+  +..|..+..   .+.|..+
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~--~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~  151 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---QRRVL--FDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETS  151 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEE--ECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEE
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCC---CEEEE--EECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEE
Confidence            356789999976555544 45678999998643   11211  1111245789999996  555544443   3577777


Q ss_pred             EeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCcccccceeEEeeeecccceeecc
Q 026295           86 EEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMF  163 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~  163 (240)
                      ++...        ....+. ........++++|  ++..|. +-...+.|.++++..      ......+.....+    
T Consensus       152 ~~dg~--------~~~~~~~~~~~~P~gia~d~--~~~~lyv~d~~~~~I~~~~~~g------~~~~~~~~~~~~P----  211 (267)
T 1npe_A          152 HMDGT--------NRRILAQDNLGLPNGLTFDA--FSSQLCWVDAGTHRAECLNPAQ------PGRRKVLEGLQYP----  211 (267)
T ss_dssp             ETTSC--------CCEEEECTTCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTE------EEEEEEEECCCSE----
T ss_pred             ecCCC--------CcEEEEECCCCCCcEEEEcC--CCCEEEEEECCCCEEEEEecCC------CceEEEecCCCCc----
Confidence            76432        111121 2224568899988  765554 444567899998864      1111111111111    


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                             ..++..  +.     .|.++....    +.|.+++..+++    ....+..  +.....+.|++.|++
T Consensus       212 -------~gi~~d--~~-----~lyva~~~~----~~v~~~d~~~g~----~~~~i~~--g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          212 -------FAVTSY--GK-----NLYYTDWKT----NSVIAMDLAISK----EMDTFHP--HKQTRLYGITIALSQ  262 (267)
T ss_dssp             -------EEEEEE--TT-----EEEEEETTT----TEEEEEETTTTE----EEEEECC--SSCCCCCCEEEECSC
T ss_pred             -------eEEEEe--CC-----EEEEEECCC----CeEEEEeCCCCC----ceEEEcc--ccccccceeeecCcc
Confidence                   145543  22     344444332    889888876543    2233322  111246788999875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=97.79  E-value=0.00011  Score=57.71  Aligned_cols=91  Identities=9%  Similarity=-0.133  Sum_probs=69.7

Q ss_pred             cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe----------cCCeEEEEEeeeccCCCcccEEEE
Q 026295           32 TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC----------SDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        32 ~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      +|.++|..     +.+.+.++..-..+  .+.++|+  +.+++.+.          .++.|.+||..+.       +.+.
T Consensus        47 ~vsvID~~-----t~~v~~~i~vG~~P--~i~~spD--g~~lyVan~~~~r~~~G~~~~~VsviD~~T~-------~vv~  110 (368)
T 1mda_H           47 ENWVSCAG-----CGVTLGHSLGAFLS--LAVAGHS--GSDFALASTSFARSAKGKRTDYVEVFDPVTF-------LPIA  110 (368)
T ss_dssp             EEEEEETT-----TTEEEEEEEECTTC--EEEECTT--SSCEEEEEEEETTTTSSSEEEEEEEECTTTC-------CEEE
T ss_pred             eEEEEECC-----CCeEEEEEeCCCCC--ceEECCC--CCEEEEEcccccccccCCCCCEEEEEECCCC-------CEEE
Confidence            78899998     67888888754555  7999999  88888775          3678999999876       7777


Q ss_pred             Eeeec-------cccEEeEEEeecCCCcEEEEEeC--CCcEEE--EEecC
Q 026295          102 SFEST-------STQVLDVQFGVSSTSLKLVAAYS--DGHVKV--YELLD  140 (240)
Q Consensus       102 ~~~~~-------~~~v~~~~~~~~~~~~~l~~~~~--dg~v~i--w~~~~  140 (240)
                      ++...       ......+.++|  +|++++++..  +..|.+  +|+.+
T Consensus       111 ~I~v~~~~~~~~g~~P~~ia~Sp--DGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          111 DIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EEECCCccccccCCCcceEEEcC--CCCEEEEEccCCCCeEEEEEEchhh
Confidence            77643       12356889999  9998888874  356888  77653

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.72  E-value=0.001  Score=50.80  Aligned_cols=145  Identities=11%  Similarity=-0.026  Sum_probs=85.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      .+.++...+++. |..++.++.|..+|.. .     +.+..+......+.++...++  +.+.+ ++  +.|..+| ..+
T Consensus       138 ~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g-----~~~~~~~~~~~~~~~~~~d~~--g~l~v-~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          138 IYATPIVSEDGT-IYVGSNDNYLYAINPD-G-----TEKWRFKTNDAITSAASIGKD--GTIYF-GS--DKVYAIN-PDG  204 (330)
T ss_dssp             CCSCCEECTTSC-EEEECTTSEEEEECTT-S-----CEEEEEECSSCCCSCCEECTT--CCEEE-ES--SSEEEEC-TTS
T ss_pred             eeeeeEEcCCCE-EEEEcCCCEEEEECCC-C-----CEeEEEecCCCceeeeEEcCC--CEEEE-Ee--CEEEEEC-CCC
Confidence            345556666666 5556777889999886 2     122333333455666777666  66544 44  7788888 433


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                             +....+......+.++...+  ++. +..++.++.|..++...       .....+......+.         
T Consensus       205 -------~~~~~~~~~~~~~~~~~~~~--~g~-l~v~t~~~gl~~~~~~g-------~~~~~~~~~~~~~~---------  258 (330)
T 3hxj_A          205 -------TEKWNFYAGYWTVTRPAISE--DGT-IYVTSLDGHLYAINPDG-------TEKWRFKTGKRIES---------  258 (330)
T ss_dssp             -------CEEEEECCSSCCCSCCEECT--TSC-EEEEETTTEEEEECTTS-------CEEEEEECSSCCCS---------
T ss_pred             -------cEEEEEccCCcceeceEECC--CCe-EEEEcCCCeEEEECCCC-------CEeEEeeCCCCccc---------
Confidence                   44444444445677888866  666 66677778888886432       22223222211111         


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                       .+...+++      .|.+++.+     +.|..+|.
T Consensus       259 -~~~~~~~g------~l~v~t~~-----ggl~~~d~  282 (330)
T 3hxj_A          259 -SPVIGNTD------TIYFGSYD-----GHLYAINP  282 (330)
T ss_dssp             -CCEECTTS------CEEEECTT-----CEEEEECT
T ss_pred             -cceEcCCC------eEEEecCC-----CCEEEECC
Confidence             34455455      47777777     88988884

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.71  E-value=0.0017  Score=55.95  Aligned_cols=115  Identities=13%  Similarity=0.030  Sum_probs=67.4

Q ss_pred             ceEEEEEC-CCCCEEEEEeC-CC----cEEEEeCCCCCCCcEEEE-eEeeecCccEEEEEEcCCCCCCEEEEEecCC---
Q 026295           11 GTTSSSWN-YCGQRLATGST-DG----TLSIFDSPDPSSSSFTCN-LKTKVHAGAILKVVWVPPEFGDAVACICSDG---   80 (240)
Q Consensus        11 ~v~~~~~s-~~~~~l~~~~~-d~----~i~iw~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~---   80 (240)
                      .+...+|| |||++||-... +|    .|+++|+....    +.+ ..+.   .....+.|+|+  |+.|+....|.   
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~----~~l~~~~~---~~~~~~~WspD--g~~l~y~~~d~~~~  245 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS----QTIADKVS---GTNGEIVWGPD--HTSLFYVTKDETLR  245 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT----CCCCCCEE---EECSCCEECSS--TTEEEEEEECTTCC
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC----EeCCcccc---CceeeEEEecC--CCEEEEEEECCCCC
Confidence            56788999 99998886543 22    49999997430    111 1111   11346899999  88777666542   


Q ss_pred             --eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC---CCcEEEEEecC
Q 026295           81 --SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS---DGHVKVYELLD  140 (240)
Q Consensus        81 --~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---dg~v~iw~~~~  140 (240)
                        .|.++++.++..   .-..+.... .......+.|+|  +|++|+..+.   ...|.++|+.+
T Consensus       246 ~~~v~~~~lgt~~~---~~~lv~~~~-~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~  304 (751)
T 2xe4_A          246 ENKVWRHVMGKLQS---EDVCLYEEH-NPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRK  304 (751)
T ss_dssp             EEEEEEEETTSCGG---GCEEEEECC-CTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSS
T ss_pred             CCEEEEEECCCCch---hcEEEEecC-CCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCC
Confidence              455566543211   001222211 223456788999  9998776653   33567777765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.71  E-value=0.0019  Score=50.56  Aligned_cols=153  Identities=8%  Similarity=0.052  Sum_probs=86.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec---------CccEE-EEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           20 CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH---------AGAIL-KVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        20 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h---------~~~v~-~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .+..+.+++.++.|..+|..     +++.+-.....         ...+. .+..  .  +..++.++.++.|..+|..+
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~-----tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~v~v~~~~g~l~a~d~~t  122 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNAD-----DGKEIWSVSLAEKDGWFSKEPALLSGGVTV--S--GGHVYIGSEKAQVYALNTSD  122 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETT-----TCCEEEEEECCC---CCSCCCCCEEEEEEE--E--TTEEEEEETTSEEEEEETTT
T ss_pred             ECCEEEEEcCCCeEEEEEcc-----CCceeeeecCccccccccccCcccccCceE--e--CCEEEEEcCCCEEEEEECCC
Confidence            35678888888999999987     44444443321         12222 2222  2  55677788899999999876


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                      +       +.+-..............    .+..+++++.++.|..+|..+      ++............. .... . 
T Consensus       123 G-------~~~W~~~~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~t------G~~~W~~~~~~~~~~-~~~~-~-  182 (376)
T 3q7m_A          123 G-------TVAWQTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEAD------GAVKWTVNLDMPSLS-LRGE-S-  182 (376)
T ss_dssp             C-------CEEEEEECSSCCCSCCEE----ETTEEEEECTTSEEEEEETTT------CCEEEEEECCC------CCC-C-
T ss_pred             C-------CEEEEEeCCCceEcCCEE----ECCEEEEEcCCCeEEEEECCC------CcEEEEEeCCCCcee-ecCC-C-
Confidence            6       444344332221222222    233578888899999999877      333333322111100 0000 0 


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                        ..... ++      .+.++..+     +.|..+|..+++..|..
T Consensus       183 --~~~~~-~~------~v~~g~~~-----g~l~~~d~~tG~~~w~~  214 (376)
T 3q7m_A          183 --APTTA-FG------AAVVGGDN-----GRVSAVLMEQGQMIWQQ  214 (376)
T ss_dssp             --CCEEE-TT------EEEECCTT-----TEEEEEETTTCCEEEEE
T ss_pred             --CcEEE-CC------EEEEEcCC-----CEEEEEECCCCcEEEEE
Confidence              11111 22      57777777     89999998877766654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.0061  Score=48.93  Aligned_cols=158  Identities=9%  Similarity=0.084  Sum_probs=88.9

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC----eEEE
Q 026295           11 GTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG----SLLL   84 (240)
Q Consensus        11 ~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~----~v~i   84 (240)
                      ....++++| ++..|..+...+.|+.+|+...     .. ..+.........|+|+++  ++.|+.+.. ++    .+.+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~-----~v-~~~~~~~~~P~~ia~d~~--G~~lyvad~~~~~~~~~v~~  209 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE-----YV-STVYSGLSKVRTICWTHE--ADSMIITNDQNNNDRPNNYI  209 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT-----EE-EEEECCCSCEEEEEECTT--SSEEEEEECCSCTTSEEEEE
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC-----EE-EEEecCCCCcceEEEeCC--CCEEEEEeCCCCcccceEEE
Confidence            346889998 4556666665578888988732     22 222234456889999998  885555543 22    2332


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      .+. .+     .+.....+.. ......++++|. ++.++++-..++.|..++....      ...........      
T Consensus       210 ~~~-~g-----~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~------~~~~~~~~~~~------  269 (430)
T 3tc9_A          210 LTR-ES-----GFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQ------ETTPLFTIQDS------  269 (430)
T ss_dssp             EEG-GG-----TSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTT------EEEEEEECSSS------
T ss_pred             EeC-CC-----ceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCC------cEEEEEEcCCC------
Confidence            332 21     1111122221 234567888762 3454555556788888887642      21111111110      


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                         ...+.++|+|++.     +|.++....    +.|..++.+.
T Consensus       270 ---~~P~gia~~pdG~-----~lyv~d~~~----~~I~~~~~d~  301 (430)
T 3tc9_A          270 ---GWEFHIQFHPSGN-----YAYIVVVNQ----HYILRSDYDW  301 (430)
T ss_dssp             ---SCCEEEEECTTSS-----EEEEEETTT----TEEEEEEEET
T ss_pred             ---CcceeEEEcCCCC-----EEEEEECCC----CEEEEEeCCc
Confidence               0113799999986     566665443    8999988774

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.63  E-value=0.0026  Score=54.27  Aligned_cols=83  Identities=13%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      |.|..||+.++       +.+-.++.+ ..+....+..  .+..++.++.||.++.||.++      ++.+.++......
T Consensus       455 g~l~A~D~~tG-------~~~W~~~~~-~~~~~g~~~t--agglvf~gt~dg~l~a~D~~t------G~~lw~~~~~~~~  518 (689)
T 1yiq_A          455 GKLIAWDPVKQ-------QAAWEVPYV-TIFNGGTLST--AGNLVFEGSADGRVIAYAADT------GEKLWEQPAASGV  518 (689)
T ss_dssp             EEEEEEETTTT-------EEEEEEEES-SSCCCCEEEE--TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCC
T ss_pred             eeEEEEECCCC-------CeEeEccCC-CCccCccceE--CCCEEEEECCCCcEEEEECCC------CccceeeeCCCCc
Confidence            67888888776       555555543 2233345666  677788999999999999998      5666555543222


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      ..         .-+.|..++.    +++++.+
T Consensus       519 ~~---------~p~ty~~~G~----qyv~~~~  537 (689)
T 1yiq_A          519 MA---------APVTYSVDGE----QYVTFMA  537 (689)
T ss_dssp             CS---------CCEEEEETTE----EEEEEEE
T ss_pred             cc---------CceEEEECCE----EEEEEEe
Confidence            11         1567777774    3666554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.61  E-value=0.0047  Score=45.29  Aligned_cols=142  Identities=9%  Similarity=0.055  Sum_probs=84.5

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccE
Q 026295           20 CGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        20 ~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      .+++|. ..-.++.+.+||..     +.+.+.++..- ..-..+++  +  +..|+.+..++.|.++|..+.       +
T Consensus        73 ~~~~ly~ltw~~~~v~v~D~~-----tl~~~~ti~~~-~~Gwglt~--d--g~~L~vSdgs~~l~~iDp~t~-------~  135 (243)
T 3mbr_X           73 WRDRLIQLTWRNHEGFVYDLA-----TLTPRARFRYP-GEGWALTS--D--DSHLYMSDGTAVIRKLDPDTL-------Q  135 (243)
T ss_dssp             ETTEEEEEESSSSEEEEEETT-----TTEEEEEEECS-SCCCEEEE--C--SSCEEEECSSSEEEEECTTTC-------C
T ss_pred             eCCEEEEEEeeCCEEEEEECC-----cCcEEEEEeCC-CCceEEee--C--CCEEEEECCCCeEEEEeCCCC-------e
Confidence            344444 34467899999998     77888888742 33345554  4  555555556788999998665       5


Q ss_pred             EEEEeeec--c---ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc--eeecc-cccccee
Q 026295           99 LCKSFEST--S---TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID--SVTMF-RKASCIS  170 (240)
Q Consensus        99 ~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~v~~~-~~~~~~~  170 (240)
                      .+..+.-.  .   ..+..+.|.   +|..++..-.+..|.+.|..+      ++.+..+.....  ..... ......-
T Consensus       136 ~~~~I~V~~~g~~~~~lNeLe~~---~G~lyanvw~s~~I~vIDp~t------G~V~~~idl~~l~~~~~~~~~~~~~vl  206 (243)
T 3mbr_X          136 QVGSIKVTAGGRPLDNLNELEWV---NGELLANVWLTSRIARIDPAS------GKVVAWIDLQALVPDADALTDSTNDVL  206 (243)
T ss_dssp             EEEEEECEETTEECCCEEEEEEE---TTEEEEEETTTTEEEEECTTT------CBEEEEEECGGGSTTTTSCCCTTSSCE
T ss_pred             EEEEEEEccCCcccccceeeEEe---CCEEEEEECCCCeEEEEECCC------CCEEEEEECCcCccccccccCCcCCce
Confidence            55555431  1   344566664   576555555677899999988      566655542211  00000 0011233


Q ss_pred             eeEEEeCCCCCCCCceEEEEe
Q 026295          171 ASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      |.++|+|...    .+++||-
T Consensus       207 NGIA~d~~~~----~lfVTGK  223 (243)
T 3mbr_X          207 NGIAFDAEHD----RLFVTGK  223 (243)
T ss_dssp             EEEEEETTTT----EEEEEET
T ss_pred             EEEEEcCCCC----EEEEECC
Confidence            6899999876    2555553

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.60  E-value=0.0017  Score=49.53  Aligned_cols=148  Identities=13%  Similarity=0.010  Sum_probs=86.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ..+.++.+++++.+.+..   +.|..+| .     +.+.+..+......+.++...++  +. +..++.++.+..++...
T Consensus       177 ~~~~~~~~d~~g~l~v~t---~~l~~~d-~-----~g~~~~~~~~~~~~~~~~~~~~~--g~-l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS---DKVYAIN-P-----DGTEKWNFYAGYWTVTRPAISED--GT-IYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             CCCSCCEECTTCCEEEES---SSEEEEC-T-----TSCEEEEECCSSCCCSCCEECTT--SC-EEEEETTTEEEEECTTS
T ss_pred             CceeeeEEcCCCEEEEEe---CEEEEEC-C-----CCcEEEEEccCCcceeceEECCC--Ce-EEEEcCCCeEEEECCCC
Confidence            345566777777755544   7788888 3     22333344444456777888776  65 45566677888877432


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                              ..+..+......+..+.+.+  ++. |..++.+|.|..+|. +      .+....+......+.        
T Consensus       245 --------~~~~~~~~~~~~~~~~~~~~--~g~-l~v~t~~ggl~~~d~-~------g~~~~~~~~~~~~~~--------  298 (330)
T 3hxj_A          245 --------TEKWRFKTGKRIESSPVIGN--TDT-IYFGSYDGHLYAINP-D------GTEKWNFETGSWIIA--------  298 (330)
T ss_dssp             --------CEEEEEECSSCCCSCCEECT--TSC-EEEECTTCEEEEECT-T------SCEEEEEECSSCCCS--------
T ss_pred             --------CEeEEeeCCCCccccceEcC--CCe-EEEecCCCCEEEECC-C------CcEEEEEEcCCcccc--------
Confidence                    33444443333344555544  555 778888888888885 3      233333322222222        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                        ++...+++.      |.+++.+     |.+++...+.
T Consensus       299 --~~~~d~~g~------l~~gt~~-----G~~~~~~~~~  324 (330)
T 3hxj_A          299 --TPVIDENGT------IYFGTRN-----GKFYALFNLE  324 (330)
T ss_dssp             --CCEECTTCC------EEEECTT-----SCEEEEEC--
T ss_pred             --ceEEcCCCE------EEEEcCC-----CeEEEEeccc
Confidence              555666664      7778887     9999877654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.59  E-value=0.0063  Score=45.17  Aligned_cols=140  Identities=11%  Similarity=0.057  Sum_probs=84.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      ++.+..-.++.+.+||..     +++.+.++.. ...-..++  ++  +..|+.+..++.|.++|..+.       +.+.
T Consensus       107 ~Ly~ltw~~~~v~V~D~~-----Tl~~~~ti~~-~~eGwGLt--~D--g~~L~vSdGs~~l~~iDp~T~-------~v~~  169 (268)
T 3nok_A          107 RLYQLTWTEGLLFTWSGM-----PPQRERTTRY-SGEGWGLC--YW--NGKLVRSDGGTMLTFHEPDGF-------ALVG  169 (268)
T ss_dssp             CEEEEESSSCEEEEEETT-----TTEEEEEEEC-SSCCCCEE--EE--TTEEEEECSSSEEEEECTTTC-------CEEE
T ss_pred             EEEEEEccCCEEEEEECC-----cCcEEEEEeC-CCceeEEe--cC--CCEEEEECCCCEEEEEcCCCC-------eEEE
Confidence            334444467899999998     7788888874 23334555  45  666666666889999997665       5555


Q ss_pred             Eeee--cc---ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce--eec-cccccceeeeE
Q 026295          102 SFES--TS---TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS--VTM-FRKASCISASI  173 (240)
Q Consensus       102 ~~~~--~~---~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~--v~~-~~~~~~~~~~v  173 (240)
                      .+.-  ..   ..+..+.|.   +|...+....+..|.+.|..+      ++.+..+......  ... .......-|.+
T Consensus       170 ~I~V~~~g~~v~~lNeLe~~---dG~lyanvw~s~~I~vIDp~T------G~V~~~Idl~~L~~~~~~~~~~~~~vlNGI  240 (268)
T 3nok_A          170 AVQVKLRGQPVELINELECA---NGVIYANIWHSSDVLEIDPAT------GTVVGVIDASALTRAVAGQVTNPEAVLNGI  240 (268)
T ss_dssp             EEECEETTEECCCEEEEEEE---TTEEEEEETTCSEEEEECTTT------CBEEEEEECHHHHHHHTTTCCCTTCCEEEE
T ss_pred             EEEeCCCCcccccccccEEe---CCEEEEEECCCCeEEEEeCCC------CcEEEEEECCCCcccccccccCcCCceEEE
Confidence            5542  11   234567774   576555555678999999987      5666555432100  000 00011123589


Q ss_pred             EEeCCCCCCCCceEEEEe
Q 026295          174 SWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       174 ~~~p~~~~~~~~~l~~~~  191 (240)
                      +|+|....    +++||-
T Consensus       241 A~dp~~~r----lfVTGK  254 (268)
T 3nok_A          241 AVEPGSGR----IFMTGK  254 (268)
T ss_dssp             EECTTTCC----EEEEET
T ss_pred             EEcCCCCE----EEEeCC
Confidence            99998762    666653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.55  E-value=0.0095  Score=44.14  Aligned_cols=137  Identities=4%  Similarity=0.011  Sum_probs=81.0

Q ss_pred             CCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcc
Q 026295           18 NYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ   96 (240)
Q Consensus        18 s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~   96 (240)
                      .++++.|.... .++.+.+||..     +.+.+.++.. ...=..++  ++  +..|+.+..+..|.++|..+.      
T Consensus        93 t~~g~~ly~ltw~~~~v~v~D~~-----t~~~~~ti~~-~~eG~glt--~d--g~~L~~SdGs~~i~~iDp~T~------  156 (262)
T 3nol_A           93 SDWKDKIVGLTWKNGLGFVWNIR-----NLRQVRSFNY-DGEGWGLT--HN--DQYLIMSDGTPVLRFLDPESL------  156 (262)
T ss_dssp             EEETTEEEEEESSSSEEEEEETT-----TCCEEEEEEC-SSCCCCEE--EC--SSCEEECCSSSEEEEECTTTC------
T ss_pred             EEeCCEEEEEEeeCCEEEEEECc-----cCcEEEEEEC-CCCceEEe--cC--CCEEEEECCCCeEEEEcCCCC------
Confidence            33455544444 57899999998     6777877764 22223444  45  555555555678999998654      


Q ss_pred             cEEEEEeeec--c---ccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc--eeeccccccce
Q 026295           97 WKLCKSFEST--S---TQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID--SVTMFRKASCI  169 (240)
Q Consensus        97 ~~~~~~~~~~--~---~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~  169 (240)
                       +.+..+.-.  .   ..++.+.|.   +|...+..-.++.|.+.|..+      ++....+.....  ...........
T Consensus       157 -~v~~~I~V~~~g~~~~~lNELe~~---~G~lyan~w~~~~I~vIDp~t------G~V~~~Id~~~L~~~~~~~~~~~~v  226 (262)
T 3nol_A          157 -TPVRTITVTAHGEELPELNELEWV---DGEIFANVWQTNKIVRIDPET------GKVTGIIDLNGILAEAGPLPSPIDV  226 (262)
T ss_dssp             -SEEEEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEECTTT------CBEEEEEECTTGGGGSCSCCSSCCC
T ss_pred             -eEEEEEEeccCCccccccceeEEE---CCEEEEEEccCCeEEEEECCC------CcEEEEEECCcCccccccccCcCCc
Confidence             555555431  1   334457774   677566555788999999987      566655543211  00000001122


Q ss_pred             eeeEEEeCCCC
Q 026295          170 SASISWNPQKG  180 (240)
Q Consensus       170 ~~~v~~~p~~~  180 (240)
                      -|.++|+|...
T Consensus       227 lNGIA~dp~~~  237 (262)
T 3nol_A          227 LNGIAWDKEHH  237 (262)
T ss_dssp             EEEEEEETTTT
T ss_pred             eEEEEEcCCCC
Confidence            35899999886

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.43  E-value=0.016  Score=44.31  Aligned_cols=112  Identities=9%  Similarity=-0.063  Sum_probs=65.4

Q ss_pred             ceEEEEECC-CCCEEEEEeC-----------------CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCE
Q 026295           11 GTTSSSWNY-CGQRLATGST-----------------DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDA   72 (240)
Q Consensus        11 ~v~~~~~s~-~~~~l~~~~~-----------------d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~   72 (240)
                      ....+++++ +|++.++-..                 ++.|..|+...     .+...... .-.....|+|+++  +..
T Consensus       127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-----~~~~~~~~-~~~~p~gia~~~d--g~~  198 (322)
T 2fp8_A          127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST-----KETTLLLK-ELHVPGGAEVSAD--SSF  198 (322)
T ss_dssp             CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT-----TEEEEEEE-EESCCCEEEECTT--SSE
T ss_pred             ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC-----CEEEEecc-CCccCcceEECCC--CCE
Confidence            467789999 8987666432                 35677777652     22211111 1234567999998  886


Q ss_pred             EEEE-ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC----------CCcEEEEEe
Q 026295           73 VACI-CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS----------DGHVKVYEL  138 (240)
Q Consensus        73 l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----------dg~v~iw~~  138 (240)
                      |..+ ...+.|..+++.....  ...+.....   .. ...+++++  +|.+.++...          .+.|..+|.
T Consensus       199 lyv~d~~~~~I~~~~~~~~~~--~~~~~~~~~---~g-P~gi~~d~--~G~l~va~~~~~~~~~~~~~~~~v~~~d~  267 (322)
T 2fp8_A          199 VLVAEFLSHQIVKYWLEGPKK--GTAEVLVKI---PN-PGNIKRNA--DGHFWVSSSEELDGNMHGRVDPKGIKFDE  267 (322)
T ss_dssp             EEEEEGGGTEEEEEESSSTTT--TCEEEEEEC---SS-EEEEEECT--TSCEEEEEEEETTSSTTSCEEEEEEEECT
T ss_pred             EEEEeCCCCeEEEEECCCCcC--CccceEEeC---CC-CCCeEECC--CCCEEEEecCcccccccCCCccEEEEECC
Confidence            5554 4567899998864210  111222221   22 67788887  8876555443          355666664

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.40  E-value=0.008  Score=46.96  Aligned_cols=136  Identities=10%  Similarity=0.022  Sum_probs=80.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEE
Q 026295           21 GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLC  100 (240)
Q Consensus        21 ~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~  100 (240)
                      +..+..++.++.+..+|..     +++.+....  ......+..  .  +..+..++.++.|..+|..++       +.+
T Consensus       239 ~~~v~~~~~~g~l~~~d~~-----tG~~~w~~~--~~~~~~~~~--~--~~~l~~~~~~g~l~~~d~~tG-------~~~  300 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLR-----SGQIMWKRE--LGSVNDFIV--D--GNRIYLVDQNDRVMALTIDGG-------VTL  300 (376)
T ss_dssp             TTEEEEECTTSCEEEEETT-----TCCEEEEEC--CCCEEEEEE--E--TTEEEEEETTCCEEEEETTTC-------CEE
T ss_pred             CCEEEEEecCcEEEEEECC-----CCcEEeecc--CCCCCCceE--E--CCEEEEEcCCCeEEEEECCCC-------cEE
Confidence            4567777888999999987     444443333  223334433  2  556777788899999998766       444


Q ss_pred             EEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCC
Q 026295          101 KSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQK  179 (240)
Q Consensus       101 ~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~  179 (240)
                      ..... ....+.....    .+..|++++.+|.|.++|..+      ++....+......+.      .   ..... ++
T Consensus       301 w~~~~~~~~~~~~~~~----~~~~l~v~~~~g~l~~~d~~t------G~~~~~~~~~~~~~~------~---~~~~~-~~  360 (376)
T 3q7m_A          301 WTQSDLLHRLLTSPVL----YNGNLVVGDSEGYLHWINVED------GRFVAQQKVDSSGFQ------T---EPVAA-DG  360 (376)
T ss_dssp             EEECTTTTSCCCCCEE----ETTEEEEECTTSEEEEEETTT------CCEEEEEECCTTCBC------S---CCEEE-TT
T ss_pred             EeecccCCCcccCCEE----ECCEEEEEeCCCeEEEEECCC------CcEEEEEecCCCcce------e---CCEEE-CC
Confidence            33331 1122233333    234588889999999999887      444444332211111      0   11111 22


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                            .|.+++.+     |.|+.|+
T Consensus       361 ------~l~v~~~~-----G~l~~~~  375 (376)
T 3q7m_A          361 ------KLLIQAKD-----GTVYSIT  375 (376)
T ss_dssp             ------EEEEEBTT-----SCEEEEE
T ss_pred             ------EEEEEeCC-----CEEEEEe
Confidence                  67888887     9998886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.39  E-value=0.02  Score=43.92  Aligned_cols=161  Identities=8%  Similarity=-0.000  Sum_probs=97.4

Q ss_pred             eEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeee----cC--ccEEEEEE---cCCCCCCEEEEEec---
Q 026295           12 TTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKV----HA--GAILKVVW---VPPEFGDAVACICS---   78 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~----h~--~~v~~~~~---~~~~~~~~l~s~~~---   78 (240)
                      -.+++|++...+|..++ ..++|..|+....   ....+ .+.+    .+  ..+..|.|   .|.  +.++++...   
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~--grL~vv~~~~~a   88 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNS--KRLFAVMKNAKS   88 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTC---CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSC--CEEEEEEEETTT
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCC---eEEEE-ecCCccccCCCcceeeEEEEeccCCC--CcEEEEEccccc
Confidence            45789988666666665 7899999998733   22333 3322    11  13578999   576  777775442   


Q ss_pred             ----------CCeEEEEEee---eccCCCcccEEEEEee--e-----------ccccEEeEEEeecCCCcEEEEEeCC-C
Q 026295           79 ----------DGSLLLWEEI---VEDAQPLQWKLCKSFE--S-----------TSTQVLDVQFGVSSTSLKLVAAYSD-G  131 (240)
Q Consensus        79 ----------d~~v~iwd~~---~~~~~~~~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~~~l~~~~~d-g  131 (240)
                                +..|..+|+.   ++       +.+....  .           .......++..+  +|+..++++.- +
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg-------~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~--~GnaYVt~s~~~~  159 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENS-------KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR--DGNSYVAFALGMP  159 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTC-------CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT--TSCEEEEEEESSC
T ss_pred             ccccccccCCCCEEEEEcCCcCCCC-------CEEEEecCccccccccccccccccCCceeEECC--CCCEEEeCCCCCC
Confidence                      5779999987   33       2222222  1           112477899988  99988888877 7


Q ss_pred             cEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          132 HVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       132 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .|...+...       +....+....    +.....+..+.+.++|++.     +|++....     +.+..+|+..
T Consensus       160 ~I~rV~pdG-------~~~~~~~~~~----~~~~~~~G~nGIv~~pdg~-----~Liv~~~~-----g~L~~fD~~~  215 (334)
T 2p9w_A          160 AIARVSADG-------KTVSTFAWES----GNGGQRPGYSGITFDPHSN-----KLIAFGGP-----RALTAFDVSK  215 (334)
T ss_dssp             EEEEECTTS-------CCEEEEEECC----CCSSSCCSCSEEEEETTTT-----EEEEESSS-----SSEEEEECSS
T ss_pred             eEEEEeCCC-------CEEeeeeecC----CCcccccCcceEEEeCCCC-----EEEEEcCC-----CeEEEEcCCC
Confidence            655555432       1111111000    0111233445899999997     66666666     9999999773

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.34  E-value=0.015  Score=44.03  Aligned_cols=162  Identities=11%  Similarity=0.124  Sum_probs=85.4

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec---------CCeEEE
Q 026295           20 CGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS---------DGSLLL   84 (240)
Q Consensus        20 ~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---------d~~v~i   84 (240)
                      ++++++.|+.+      ..+.+||....   +|+.+..+.........+.+  +  +.+++.|+.         -..+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~~~  173 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTE---SWHTKPSMLTQRCSHGMVEA--N--GLIYVCGGSLGNNVSGRVLNSCEV  173 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTT---EEEEECCCSSCCBSCEEEEE--T--TEEEEECCEESCTTTCEECCCEEE
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCC---ceEeCCCCcCCcceeEEEEE--C--CEEEEECCCCCCCCcccccceEEE
Confidence            56677777765      45888888754   67666544321111222222  3  566666653         234777


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEeeeecccce
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ||+..     ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+..+..... 
T Consensus       174 yd~~~-----~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~r~-  239 (306)
T 3ii7_A          174 YDPAT-----ETWTELCPMIEARKNHGLVFV----KDKIFAVGGQNGLGGLDNVEYYDIKL----NEWKMVSPMPWKGV-  239 (306)
T ss_dssp             EETTT-----TEEEEECCCSSCCBSCEEEEE----TTEEEEECCEETTEEBCCEEEEETTT----TEEEECCCCSCCBS-
T ss_pred             eCCCC-----CeEEECCCccchhhcceEEEE----CCEEEEEeCCCCCCCCceEEEeeCCC----CcEEECCCCCCCcc-
Confidence            88765     356766554433332223333    56667776643     3578888876    23554433221110 


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeee
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                             ..  ..+.+  ++.     +++.|+.+.......+.+||..+  ..|.....++
T Consensus       240 -------~~--~~~~~--~~~-----i~v~GG~~~~~~~~~~~~yd~~~--~~W~~~~~~~  282 (306)
T 3ii7_A          240 -------TV--KCAAV--GSI-----VYVLAGFQGVGRLGHILEYNTET--DKWVANSKVR  282 (306)
T ss_dssp             -------CC--EEEEE--TTE-----EEEEECBCSSSBCCEEEEEETTT--TEEEEEEEEE
T ss_pred             -------ce--eEEEE--CCE-----EEEEeCcCCCeeeeeEEEEcCCC--CeEEeCCCcc
Confidence                   01  02222  332     77888765322335677777655  4577766555

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.27  E-value=0.033  Score=43.92  Aligned_cols=158  Identities=1%  Similarity=-0.187  Sum_probs=84.6

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ....++|++.+..|... ...+.|..+++...   ..+.  .+.........+++.+. .+.++++-...+.|.+.++..
T Consensus       117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---~~~~--~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg  190 (386)
T 3v65_B          117 NAIALDFHHRRELVFWSDVTLDRILRANLNGS---NVEE--VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDG  190 (386)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSC---CEEE--EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTS
T ss_pred             ccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---CcEE--EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCC
Confidence            46788999765555444 45678888888743   1111  12211233456777765 144444545566787777653


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CC-CcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SD-GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      .       .....+...-.....++++|  .+..|.... .. +.|..+++..       .....+....         .
T Consensus       191 ~-------~~~~l~~~~l~~P~giavdp--~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~---------~  245 (386)
T 3v65_B          191 A-------HRKVLLWQSLEKPRAIALHP--MEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTH---------L  245 (386)
T ss_dssp             C-------SCEEEECSSCSCEEEEEEET--TTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSS---------C
T ss_pred             C-------ceEEeecCCCCCCcEEEEEc--CCCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECC---------C
Confidence            2       11111222234568899987  555444443 33 5677666543       1111111110         0


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ...+.++|+|...     .|..+....    +.|..++++.
T Consensus       246 ~~PnGlavd~~~~-----~lY~aD~~~----~~I~~~d~dG  277 (386)
T 3v65_B          246 FWPNGLTIDYAGR-----RMYWVDAKH----HVIERANLDG  277 (386)
T ss_dssp             SCEEEEEEEGGGT-----EEEEEETTT----TEEEEECTTS
T ss_pred             CCeeeEEEeCCCC-----EEEEEECCC----CEEEEEeCCC
Confidence            1124799998765     455554432    7888888754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.24  E-value=0.039  Score=41.84  Aligned_cols=185  Identities=11%  Similarity=-0.011  Sum_probs=92.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      .....++++++|+++++.....  .|..++....   ..+.+..+. .......++..+.  +..+++-..++.|..+|.
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g---~~~~~~~~~-~~~~~~g~~~~~~--~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG---TVETLLTLP-DAIFLNGITPLSD--TQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS---CEEEEEECT-TCSCEEEEEESSS--SEEEEEETTTTEEEEEET
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC---eEEEEEeCC-CccccCcccccCC--CcEEEEECCCCeEEEEeC
Confidence            4577899999998666554332  3555565422   222222221 1222344554444  444444445777777776


Q ss_pred             eeccCCCcccEEEEE--------eeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           88 IVEDAQPLQWKLCKS--------FESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      ..+..     +....        ....-.....+  +|  ++.+| ++-...+.|..+++.........+....+    .
T Consensus       146 ~~~~~-----~v~~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~----~  212 (306)
T 2p4o_A          146 VQPSG-----SIWLEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ----T  212 (306)
T ss_dssp             TTTEE-----EEEEECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES----C
T ss_pred             CCCcE-----eEEEECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc----C
Confidence            43200     11100        00111223445  77  66544 44456788999998642111111211111    0


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe---
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA---  235 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s---  235 (240)
                      ..          ..+++++++.     ++++....     +.|.+++.. +.  ......+...   ....++++|.   
T Consensus       213 ~P----------~gi~vd~dG~-----l~va~~~~-----~~V~~~~~~-G~--~~~~~~~~~~---~~~p~~~a~~g~~  266 (306)
T 2p4o_A          213 NI----------DDFAFDVEGN-----LYGATHIY-----NSVVRIAPD-RS--TTIIAQAEQG---VIGSTAVAFGQTE  266 (306)
T ss_dssp             CC----------SSEEEBTTCC-----EEEECBTT-----CCEEEECTT-CC--EEEEECGGGT---CTTEEEEEECCST
T ss_pred             CC----------CCeEECCCCC-----EEEEeCCC-----CeEEEECCC-CC--EEEEeecccc---cCCceEEEEeccc
Confidence            11          2788999886     55555445     789998854 21  1111122211   1368999998   


Q ss_pred             cCCC
Q 026295          236 LNIG  239 (240)
Q Consensus       236 p~~~  239 (240)
                      ||++
T Consensus       267 ~d~~  270 (306)
T 2p4o_A          267 GDCT  270 (306)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.23  E-value=0.017  Score=49.15  Aligned_cols=70  Identities=11%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             EEEECCCCCEEEEEeCCCc-------------------EEEEeCCCCCCCcEEEEeEeee--cC-------ccEEEEEEc
Q 026295           14 SSSWNYCGQRLATGSTDGT-------------------LSIFDSPDPSSSSFTCNLKTKV--HA-------GAILKVVWV   65 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~-------------------i~iw~~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~   65 (240)
                      .++++++..++..+..++.                   |..+|..     +++.+-.++.  |.       .+.......
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~-----tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~  308 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD-----TGKLAWHYQVTPGDSWDFTATQQITLAELN  308 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT-----TCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC-----CCceeeEeecCCCccccccCCCCcEEEEec
Confidence            5788888888888877663                   8888887     5566655543  22       222222222


Q ss_pred             CCCCCC---EEEEEecCCeEEEEEeeec
Q 026295           66 PPEFGD---AVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        66 ~~~~~~---~l~s~~~d~~v~iwd~~~~   90 (240)
                      .+  |.   .++.++.+|.+.++|..++
T Consensus       309 ~~--G~~~~~v~~~~~~G~l~~lD~~tG  334 (668)
T 1kv9_A          309 ID--GKPRKVLMQAPKNGFFYVLDRTNG  334 (668)
T ss_dssp             ET--TEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cC--CcEEEEEEEECCCCEEEEEECCCC
Confidence            24  54   6888889999999998766

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.20  E-value=0.05  Score=42.27  Aligned_cols=159  Identities=1%  Similarity=-0.164  Sum_probs=86.3

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ....++|++....|... ...+.|..+++....   .+.+  +.........+++.+. .+.++++-...+.|.+.++..
T Consensus        74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---~~~~--~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN---VEEV--VSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE--ECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEeccccEEEEEeccCCceEEEecCCCC---ceEE--EeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCC
Confidence            46788999766555544 456788888886431   1111  1111234567888765 144445555567888888754


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCC-CcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSD-GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      .       .....+...-.....++++|  .+..|. +-... +.|..+++..       .....+....         .
T Consensus       148 ~-------~~~~l~~~~l~~P~~iavdp--~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~---------~  202 (349)
T 3v64_C          148 A-------HRKVLLWQSLEKPRAIALHP--MEGTIYWTDWGNTPRIEASSMDG-------SGRRIIADTH---------L  202 (349)
T ss_dssp             C-------SCEEEECTTCSCEEEEEEET--TTTEEEEEECSSSCEEEEEETTS-------CSCEESCCSS---------C
T ss_pred             C-------ceEEEEeCCCCCcceEEEec--CcCeEEEeccCCCCEEEEEeCCC-------CCcEEEEECC---------C
Confidence            3       11111222234568899987  544444 43344 6677776653       1111111100         1


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      ...+.++++|...     .|..+....    +.|..++++..
T Consensus       203 ~~PnGla~d~~~~-----~lY~aD~~~----~~I~~~~~dG~  235 (349)
T 3v64_C          203 FWPNGLTIDYAGR-----RMYWVDAKH----HVIERANLDGS  235 (349)
T ss_dssp             SCEEEEEEETTTT-----EEEEEETTT----TEEEEEETTSC
T ss_pred             CCcceEEEeCCCC-----EEEEEECCC----CEEEEEeCCCC
Confidence            1124899998775     455554432    78888887643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.16  E-value=0.055  Score=42.67  Aligned_cols=110  Identities=5%  Similarity=-0.091  Sum_probs=59.6

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeec
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVE   90 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~   90 (240)
                      ..|.+..+. .+|+.+.. ..|+..++...   ....  .+. ....+..++|.+.  ...|+ +-...+.|..+++...
T Consensus        79 ~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~---~~~~--~~~-~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           79 RSCKALGPE-PVLLFANR-IDIRQVLPHRS---EYTL--LLN-NLENAIALDFHHR--RELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             SCEEECSSC-CEEEEECB-SCEEEECTTSC---CCEE--EEC-SCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSC
T ss_pred             CeECCcccc-ceeEeecC-ccceeeccCCC---cEEE--Eec-CCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCC
Confidence            345555553 34444433 56888887643   1111  122 2345779999876  44444 4445678888887643


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                             .....+.........+++++. .+.++++-...+.|.+.++.
T Consensus       149 -------~~~~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~d  189 (386)
T 3v65_B          149 -------NVEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLD  189 (386)
T ss_dssp             -------CEEEEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTT
T ss_pred             -------CcEEEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCC
Confidence                   222222222234567888761 34444555556777777665

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.16  E-value=0.05  Score=41.58  Aligned_cols=162  Identities=6%  Similarity=-0.126  Sum_probs=86.4

Q ss_pred             cceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEe-EeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNL-KTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      .....++|++.++.|..+ ..++.|..+++....  ...... .+...-.....+++.+. .+.+.++-...+.|.+.++
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~--~~~~~~~~~~~~~~~p~glavd~~-~~~ly~~d~~~~~I~~~~~  106 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH--GVSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADT  106 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC--CCcccEEEEeCCCCCcCEEEEeec-CCeEEEEECCCCEEEEEeC
Confidence            346789999876555544 455889888886310  001111 12222234568888765 1444445456778988887


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-C-CcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-D-GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      ...       .....+...-.....++++|  .+..|..+.. . +.|...++..       .....+....        
T Consensus       107 ~g~-------~~~~~~~~~~~~P~~iavdp--~~g~ly~~d~~~~~~I~~~~~dG-------~~~~~~~~~~--------  162 (316)
T 1ijq_A          107 KGV-------KRKTLFRENGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTEN--------  162 (316)
T ss_dssp             TSS-------SEEEEEECTTCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTS-------CCEEEEECSS--------
T ss_pred             CCC-------ceEEEEECCCCCcceEEeCC--CCCEEEEEccCCCCeEEEEcCCC-------CCeEEEEECC--------
Confidence            542       22222222334568899987  5554544443 2 5677776642       1111111110        


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                       ....+.++|+|++.     .|..+....    +.|..++++.
T Consensus       163 -~~~P~gla~d~~~~-----~lY~~D~~~----~~I~~~d~dg  195 (316)
T 1ijq_A          163 -IQWPNGITLDLLSG-----RLYWVDSKL----HSISSIDVNG  195 (316)
T ss_dssp             -CSCEEEEEEETTTT-----EEEEEETTT----TEEEEEETTS
T ss_pred             -CCCceEEEEeccCC-----EEEEEECCC----CeEEEEecCC
Confidence             01124889998765     455554432    7888888764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.14  E-value=0.057  Score=41.90  Aligned_cols=113  Identities=6%  Similarity=-0.088  Sum_probs=62.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~   88 (240)
                      +..+|.+..++. +|+.+.. ..|+..++...   ...  ..+.. ...+..++|.+.  ...|. +-...+.|..+++.
T Consensus        34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~---~~~--~~~~~-~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~  103 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRS---EYT--LLLNN-LENAIALDFHHR--RELVFWSDVTLDRILRANLN  103 (349)
T ss_dssp             TSSCEEESSSCC-EEEEECB-SCEEEECTTSC---CEE--EEECS-CSCEEEEEEETT--TTEEEEEETTTTEEEEEETT
T ss_pred             CCCcccccccCc-eeEeecc-cceEEEeCCCC---eeE--EeecC-CCceEEEEEecc--ccEEEEEeccCCceEEEecC
Confidence            345566666643 4444433 46777777643   122  22222 345789999876  55444 44456788888875


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..       .....+.........+++++. .+.++++-...+.|.+.++..
T Consensus       104 g~-------~~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C          104 GS-------NVEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             SC-------SCEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             CC-------CceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCC
Confidence            43       111112222234567888761 344445555667888888764

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.14  E-value=0.029  Score=42.29  Aligned_cols=162  Identities=11%  Similarity=0.118  Sum_probs=85.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-----CeEEEEEeee
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-----GSLLLWEEIV   89 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~   89 (240)
                      +++.++.|+.+     ..+.+||+...   +|..+..+.........+.+  +  +.+++.|+.+     ..+.+||+.+
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~d~~~  184 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNID---QWSMLGDMQTAREGAGLVVA--S--GVIYCLGGYDGLNILNSVEKYDPHT  184 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTT---EEEEEEECSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCC---eEEECCCCCCCcccceEEEE--C--CEEEEECCCCCCcccceEEEEeCCC
Confidence            56677777654     35788888744   67766554322221222222  4  6677777654     3577777754


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                           ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+..+....       
T Consensus       185 -----~~W~~~~~~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r-------  244 (301)
T 2vpj_A          185 -----GHWTNVTPMATKRSGAGVALL----NDHIYVVGGFDGTAHLSSVEAYNIRT----DSWTTVTSMTTPR-------  244 (301)
T ss_dssp             -----TEEEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTT----TEEEEECCCSSCC-------
T ss_pred             -----CcEEeCCCCCcccccceEEEE----CCEEEEEeCCCCCcccceEEEEeCCC----CcEEECCCCCCcc-------
Confidence                 456766544433333233333    66777777754     4688898876    2355443221111       


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeee
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                       ...  ..+.+  ++.     +++.|+.+.......|.+||..+  ..|.....++
T Consensus       245 -~~~--~~~~~--~~~-----i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~~  288 (301)
T 2vpj_A          245 -CYV--GATVL--RGR-----LYAIAGYDGNSLLSSIECYDPII--DSWEVVTSMG  288 (301)
T ss_dssp             -BSC--EEEEE--TTE-----EEEECCBCSSSBEEEEEEEETTT--TEEEEEEEEE
T ss_pred             -cce--eEEEE--CCE-----EEEEcCcCCCcccccEEEEcCCC--CeEEEcCCCC
Confidence             011  02222  332     77777765222123456666544  4576665544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.09  E-value=0.019  Score=43.66  Aligned_cols=162  Identities=15%  Similarity=0.195  Sum_probs=86.1

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-----CeEEEEEeee
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-----GSLLLWEEIV   89 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~   89 (240)
                      +++.++.|+.+     ..+.+||+...   +|..+..+.........+.+  +  +.+++.|+.+     ..+.+||+..
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~yd~~~  193 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERD---EWHLVAPMLTRRIGVGVAVL--N--RLLYAVGGFDGTNRLNSAECYYPER  193 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTT---EEEECCCCSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCC---eEeECCCCCccccceEEEEE--C--CEEEEEeCCCCCCcCceEEEEeCCC
Confidence            56677776643     35778888744   66665544322222222223  4  6667777654     3577777754


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                           ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+..+....       
T Consensus       194 -----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~~~p~~r-------  253 (308)
T 1zgk_A          194 -----NEWRMITAMNTIRSGAGVCVL----HNCIYAAGGYDGQDQLNSVERYDVET----ETWTFVAPMKHRR-------  253 (308)
T ss_dssp             -----TEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSSBCCCEEEEETTT----TEEEECCCCSSCC-------
T ss_pred             -----CeEeeCCCCCCccccceEEEE----CCEEEEEeCCCCCCccceEEEEeCCC----CcEEECCCCCCCc-------
Confidence                 356665554433333333333    66777777654     4588888876    2355443221111       


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeee
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                       ...   ++... ++.     +++.|+.+.......+.+||..+  ..|.....++
T Consensus       254 -~~~---~~~~~-~~~-----i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~~p  297 (308)
T 1zgk_A          254 -SAL---GITVH-QGR-----IYVLGGYDGHTFLDSVECYDPDT--DTWSEVTRMT  297 (308)
T ss_dssp             -BSC---EEEEE-TTE-----EEEECCBCSSCBCCEEEEEETTT--TEEEEEEECS
T ss_pred             -cce---EEEEE-CCE-----EEEEcCcCCCcccceEEEEcCCC--CEEeecCCCC
Confidence             001   12221 222     77888765333335677777655  4576665544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.09  E-value=0.061  Score=41.30  Aligned_cols=111  Identities=14%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      +...+..+++++++.+++.+...+..+-.|-...   +++.+..  .....+..+.+.++  +.++ ..+.+|.+.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~---tW~~~~~--~~~~~~~~~~~~~~--g~~~-~~~~~G~~~~s~~  232 (327)
T 2xbg_A          161 AIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQT---AWEPHNR--TTSRRLHNMGFTPD--GRLW-MIVNGGKIAFSDP  232 (327)
T ss_dssp             CCCCEEEEEECTTSCEEEEETTSSEEEEECTTCS---SCEEEEC--CSSSCEEEEEECTT--SCEE-EEETTTEEEEEET
T ss_pred             CCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCC---ceeECCC--CCCCccceeEECCC--CCEE-EEeCCceEEEecC
Confidence            3456889999999888877654333333332111   6666532  34567888999887  7655 4456787776532


Q ss_pred             eeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeCCCcE
Q 026295           88 IVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYSDGHV  133 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  133 (240)
                      ..+    ..|..+..- ......+..+.+.+  ++.++++ +.+|.|
T Consensus       233 D~G----~tW~~~~~~~~~~~~~~~~v~~~~--~~~~~~~-g~~g~i  272 (327)
T 2xbg_A          233 DNS----ENWGELLSPLRRNSVGFLDLAYRT--PNEVWLA-GGAGAL  272 (327)
T ss_dssp             TEE----EEECCCBCTTSSCCSCEEEEEESS--SSCEEEE-ESTTCE
T ss_pred             CCC----CeeEeccCCcccCCcceEEEEecC--CCEEEEE-eCCCeE
Confidence            212    233332211 01123578888877  7775554 456766

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.08  E-value=0.075  Score=42.11  Aligned_cols=163  Identities=6%  Similarity=-0.108  Sum_probs=86.5

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           10 KGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ..+..++|++.+..|.-.. ..+.|+.+++..... .......+.........|++.+. .+.+.++-...+.|.+.++.
T Consensus       112 ~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-~~~~~~~~~~~~~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          112 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VSSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-------CCCEEEECSSCSCEEEEEEETT-TTEEEEEETTTTEEEEECTT
T ss_pred             CcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-CCcceEEEeCCCCCcccEEEEec-CCceEEEECCCCeEEEEeCC
Confidence            4677899998665555544 557788888763110 00011112222345678888764 14444554556788888875


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe--CCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      ..       .....+...-.....|+++|  .+.+|....  ..+.|...++..       .....+....         
T Consensus       190 g~-------~~~~l~~~~~~~P~~iavdp--~~g~ly~td~~~~~~I~~~~~dG-------~~~~~~~~~~---------  244 (400)
T 3p5b_L          190 GV-------KRKTLFRENGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTEN---------  244 (400)
T ss_dssp             TC-------SEEEEEECSSCCEEEEEEET--TTTEEEEEECSSSCCEEEEETTS-------CSCEEEECSS---------
T ss_pred             CC-------ceEEEEeCCCCCcceEEEec--ccCeEEEEeCCCCCEEEEEeCCC-------CccEEEEECC---------
Confidence            43       22222332334568899988  555444443  236677776653       1111111100         


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ....+.++++|...     .|..+....    +.|..++++.
T Consensus       245 l~~P~glavd~~~~-----~lY~aD~~~----~~I~~~d~dG  277 (400)
T 3p5b_L          245 IQWPNGITLDLLSG-----RLYWVDSKL----HSISSIDVNG  277 (400)
T ss_dssp             CSCEEEEEEETTTT-----EEEEEETTT----TEEEEEETTS
T ss_pred             CCceEEEEEEeCCC-----EEEEEECCC----CEEEEEeCCC
Confidence            01123788998775     455554432    6788887754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.05  E-value=0.064  Score=40.88  Aligned_cols=114  Identities=16%  Similarity=0.027  Sum_probs=65.9

Q ss_pred             ceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-ee-cCccEEEEEEcC-CCCCCEEEEEec--------
Q 026295           11 GTTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KV-HAGAILKVVWVP-PEFGDAVACICS--------   78 (240)
Q Consensus        11 ~v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~-~~~~~~l~s~~~--------   78 (240)
                      ....+++++ +++ |..+...+.|..++....   ..+.+... .+ .......+++.+ +  |.+.++-..        
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~p~~i~~d~~~--G~l~v~d~~~~~~~~~~  154 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGG---HATQLATSVDGVPFKWLYAVTVDQRT--GIVYFTDVSTLYDDRGV  154 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCE---ECEEEESEETTEECSCEEEEEECTTT--CCEEEEESCSSCCTTCH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCC---EEEEecccCCCCcccccceEEEecCC--CEEEEECCccccccccc
Confidence            578899998 565 445544455888886521   11112111 11 113467899998 8  876665432        


Q ss_pred             ---------CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecC
Q 026295           79 ---------DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLD  140 (240)
Q Consensus        79 ---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~  140 (240)
                               ++.|..+|...+       +.. .+...-.....++|+|  ++.+|..+ +.++.|.+|++..
T Consensus       155 ~~~~~~~~~~g~v~~~d~~~~-------~~~-~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          155 QQIMDTSDKTGRLIKYDPSTK-------ETT-LLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             HHHHHHTCCCEEEEEEETTTT-------EEE-EEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSS
T ss_pred             ceehcccCCCceEEEEeCCCC-------EEE-EeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCC
Confidence                     256777765433       221 1211123446789988  88755544 5568899999864

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.96  E-value=0.03  Score=42.29  Aligned_cols=158  Identities=15%  Similarity=0.188  Sum_probs=83.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-------CeEEEEEe
Q 026295           20 CGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-------GSLLLWEE   87 (240)
Q Consensus        20 ~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------~~v~iwd~   87 (240)
                      +++.++.|+.++     .+.+||+...   +|..+..+.........+.+  +  +.+++.|+.+       ..+.+||+
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~yd~  180 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSN---EWFHVAPMNTRRSSVGVGVV--G--GLLYAVGGYDVASRQCLSTVECYNA  180 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTT---EEEEECCCSSCCBSCEEEEE--T--TEEEEECCEETTTTEECCCEEEEET
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCC---eEeecCCCCCcccCceEEEE--C--CEEEEEeCCCCCCCccccEEEEEeC
Confidence            566777777553     4778887644   67666544322222222222  3  5666666543       34777777


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      ..     ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+..+....     
T Consensus       181 ~~-----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~r-----  242 (302)
T 2xn4_A          181 TT-----NEWTYIAEMSTRRSGAGVGVL----NNLLYAVGGHDGPLVRKSVEVYDPTT----NAWRQVADMNMCR-----  242 (302)
T ss_dssp             TT-----TEEEEECCCSSCCBSCEEEEE----TTEEEEECCBSSSSBCCCEEEEETTT----TEEEEECCCSSCC-----
T ss_pred             CC-----CcEEECCCCccccccccEEEE----CCEEEEECCCCCCcccceEEEEeCCC----CCEeeCCCCCCcc-----
Confidence            54     456766555433333333333    67777777754     3688888875    3355443321111     


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCccee
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPV  216 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~  216 (240)
                         ...   .+... ++.     +++.|+.+.......+.+||..+.  .|...
T Consensus       243 ---~~~---~~~~~-~~~-----i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~  282 (302)
T 2xn4_A          243 ---RNA---GVCAV-NGL-----LYVVGGDDGSCNLASVEYYNPTTD--KWTVV  282 (302)
T ss_dssp             ---BSC---EEEEE-TTE-----EEEECCBCSSSBCCCEEEEETTTT--EEEEC
T ss_pred             ---ccC---eEEEE-CCE-----EEEECCcCCCcccccEEEEcCCCC--eEEEC
Confidence               111   12211 332     778887653222245788887654  46544

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=96.93  E-value=0.081  Score=40.06  Aligned_cols=114  Identities=10%  Similarity=0.045  Sum_probs=65.9

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC--eEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG--SLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~   87 (240)
                      .....++|+++|+++++-..++.|..|+....      ....+. -......+++.++  |+++++.....  .|..++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~------~~~~~~-~~~~p~gia~~~d--G~l~vad~~~~~~~v~~~d~  102 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN------QQIHAT-VEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVK  102 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC------EEEEEE-CSSEEEEEEECTT--SCEEEEEECTTSCEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc------eEEEEe-CCCCceeEEEcCC--CcEEEEeccCCcceEEEEcC
Confidence            45678999999997777767889999987631      122222 2356889999998  88665543322  3555554


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..+     ....+..... ......++..+  .+..+++-..++.|.++|...
T Consensus       103 ~~g-----~~~~~~~~~~-~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~  147 (306)
T 2p4o_A          103 SDG-----TVETLLTLPD-AIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQ  147 (306)
T ss_dssp             TTS-----CEEEEEECTT-CSCEEEEEESS--SSEEEEEETTTTEEEEEETTT
T ss_pred             CCC-----eEEEEEeCCC-ccccCcccccC--CCcEEEEECCCCeEEEEeCCC
Confidence            333     1122222211 12223444444  555444444578888888653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.86  E-value=0.13  Score=41.27  Aligned_cols=158  Identities=11%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             ceEEEEECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---Ce-EEE
Q 026295           11 GTTSSSWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---GS-LLL   84 (240)
Q Consensus        11 ~v~~~~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~-v~i   84 (240)
                      .-..++|+|+  ...|..+...+.|+.++...     ... ..+.........++++++  |.++++-...   .. +..
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-----g~v-~~~~~~~~~P~giavd~d--G~lyVad~~~~~~~~gv~~  211 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-----QYV-DIKTTNIGQCADVNFTLN--GDMVVVDDQSSDTNTGIYL  211 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-----TEE-EEECCCCSCEEEEEECTT--CCEEEEECCSCTTSEEEEE
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCC-----CEE-EEeecCCCCccEEEECCC--CCEEEEcCCCCcccceEEE
Confidence            3568999985  44555554448899999862     222 233333456889999999  8844443211   11 222


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeee-ecccceeecc
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEF-QNAIDSVTMF  163 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~-~~~~~~v~~~  163 (240)
                      .+....      +.....+. .-.....++++|. ++.++++-..++.|..++..+      ......+ ......    
T Consensus       212 ~~~~~~------~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~------g~~~~~~~~~~~~~----  273 (433)
T 4hw6_A          212 FTRASG------FTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPAT------GTLTEEEVMMDTKG----  273 (433)
T ss_dssp             ECGGGT------TCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTT------CCEEEEEEECSCCS----
T ss_pred             EECCCC------eecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCC------CeEEEEEeccCCCC----
Confidence            222111      11111111 1234466788762 344444444667888888764      2221111 111110    


Q ss_pred             ccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          164 RKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       164 ~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                           ....++|+|++.     .|.++....    +.|+.++++.
T Consensus       274 -----~~~~ia~dpdG~-----~LYvad~~~----~~I~~~~~d~  304 (433)
T 4hw6_A          274 -----SNFHIVWHPTGD-----WAYIIYNGK----HCIYRVDYNR  304 (433)
T ss_dssp             -----SCEEEEECTTSS-----EEEEEETTT----TEEEEEEBCT
T ss_pred             -----CcccEEEeCCCC-----EEEEEeCCC----CEEEEEeCCC
Confidence                 012589999986     565555433    7888888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.85  E-value=0.1  Score=40.04  Aligned_cols=110  Identities=15%  Similarity=0.195  Sum_probs=64.9

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .+.+..+.+.+++..++.+ .++.|  |.....+ .+++.+..  .....+..+.+.++  +.+++.+ .++.+..-+  
T Consensus       121 ~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG-~tW~~~~~--~~~~~~~~~~~~~~--~~~~~~g-~~G~~~~S~--  189 (327)
T 2xbg_A          121 PGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSG-KNWQALVQ--EAIGVMRNLNRSPS--GEYVAVS-SRGSFYSTW--  189 (327)
T ss_dssp             SSCEEEEEEEETTEEEEEE-TTCCE--EEESSTT-SSEEEEEC--SCCCCEEEEEECTT--SCEEEEE-TTSSEEEEE--
T ss_pred             CCCeEEEEEECCCCEEEEe-CCccE--EEEcCCC-CCCEEeec--CCCcceEEEEEcCC--CcEEEEE-CCCcEEEEe--
Confidence            3457778877777666655 45654  3222211 16766542  34567889999887  7777665 445443211  


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEE
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY  136 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw  136 (240)
                        +..+..|+.+..  .....+..+.+.+  ++. +..++.+|.+.+.
T Consensus       190 --d~gG~tW~~~~~--~~~~~~~~~~~~~--~g~-~~~~~~~G~~~~s  230 (327)
T 2xbg_A          190 --EPGQTAWEPHNR--TTSRRLHNMGFTP--DGR-LWMIVNGGKIAFS  230 (327)
T ss_dssp             --CTTCSSCEEEEC--CSSSCEEEEEECT--TSC-EEEEETTTEEEEE
T ss_pred             --CCCCCceeECCC--CCCCccceeEECC--CCC-EEEEeCCceEEEe
Confidence              111256776532  2345678888877  777 4456667877665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.85  E-value=0.2  Score=43.43  Aligned_cols=118  Identities=6%  Similarity=-0.114  Sum_probs=63.7

Q ss_pred             cceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~   87 (240)
                      ..+..++|++...+|. +-...+.|+.+++..... .......+.........|++.+.  +. ++++-...+.|.+.++
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~-~~~~~~vi~~~l~~P~GLAvD~~--~~~LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VSSYDTVISRDIQAPDGLAVDWI--HSNIYWTDSVLGTVSVADT  500 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEET
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCC-CcceeEEEecCCCCcceeeeeec--CCcEEEEecCCCeEEEEeC
Confidence            4567889988555444 444557788888763210 00111122222344567888766  54 4445455678888887


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CC-CcEEEEEec
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SD-GHVKVYELL  139 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-g~v~iw~~~  139 (240)
                      ...       .....+...-.....|+++|  ...+|.... .+ +.|...++.
T Consensus       501 dG~-------~~~~l~~~~l~~P~gIaVDp--~~g~LYwtD~g~~~~I~~~~~d  545 (791)
T 3m0c_C          501 KGV-------KRKTLFRENGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLN  545 (791)
T ss_dssp             TSS-------SEEEEEECTTCCEEEEEEET--TTTEEEEEECSSSCEEEEEETT
T ss_pred             CCC-------eEEEEEeCCCCCcceEEEec--CCCCEEEecCCCCCeEEEEecC
Confidence            643       22222223334578899988  544444443 22 567777665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.84  E-value=0.09  Score=39.56  Aligned_cols=162  Identities=14%  Similarity=0.172  Sum_probs=84.0

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEeee
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEIV   89 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~   89 (240)
                      +++.++.|+.+     ..+.+||+.......++.+..+.........+.+  +  +.+++.|+.++     .+.+||...
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--G--DMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--T--TEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--C--CEEEEEcccCCCcccceEEEEcCCC
Confidence            56677777754     3588899875410117666554422222222222  4  66677766543     567777654


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                           ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+..+....       
T Consensus       138 -----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~----~~W~~~~~~p~~r-------  197 (301)
T 2vpj_A          138 -----DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHT----GHWTNVTPMATKR-------  197 (301)
T ss_dssp             -----TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTT----TEEEEECCCSSCC-------
T ss_pred             -----CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCC----CcEEeCCCCCccc-------
Confidence                 457776655543333233322    67777777654     4578888765    2355443221110       


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA  217 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~  217 (240)
                       ...  ..+.+  ++.     +++.|+.+.......+.+||..+.  .|....
T Consensus       198 -~~~--~~~~~--~~~-----i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~  238 (301)
T 2vpj_A          198 -SGA--GVALL--NDH-----IYVVGGFDGTAHLSSVEAYNIRTD--SWTTVT  238 (301)
T ss_dssp             -BSC--EEEEE--TTE-----EEEECCBCSSSBCCCEEEEETTTT--EEEEEC
T ss_pred             -ccc--eEEEE--CCE-----EEEEeCCCCCcccceEEEEeCCCC--cEEECC
Confidence             001  02222  222     777777652222256778877553  355443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.78  E-value=0.081  Score=44.07  Aligned_cols=25  Identities=8%  Similarity=0.005  Sum_probs=20.5

Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                      ++.+++.|     +.|+.||..+++..|..
T Consensus       477 ~v~~g~~d-----g~l~a~D~~tG~~lw~~  501 (571)
T 2ad6_A          477 LVWYATLD-----GYLKALDNKDGKELWNF  501 (571)
T ss_dssp             EEEEECTT-----SEEEEEETTTCCEEEEE
T ss_pred             EEEEEcCC-----CeEEEEECCCCCEEEEE
Confidence            56777777     99999999998877755

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.76  E-value=0.014  Score=49.46  Aligned_cols=114  Identities=11%  Similarity=-0.008  Sum_probs=74.4

Q ss_pred             EEEECC-CCCEEEEEeCCC-----------cEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEec-C
Q 026295           14 SSSWNY-CGQRLATGSTDG-----------TLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICS-D   79 (240)
Q Consensus        14 ~~~~s~-~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~-d   79 (240)
                      .+++.+ +++.++.|+.+.           .+.+||....   ++..+..+.. +......+++..+  +.+++.|+. +
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---~w~~~~~~~~~~~~~~~~~~~~~~--g~lyv~GG~~~  264 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---IVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGNDA  264 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---CBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSST
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC---cEEeCcccCCCCCCccccccCCCC--CCEEEeCCCCC
Confidence            566777 888888887643           5788998754   4544444432 2223345677787  888888884 4


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-CC-----CcEEEEEecC
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-SD-----GHVKVYELLD  140 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~d-----g~v~iw~~~~  140 (240)
                      ..+.+||...     ..|..+..+...+.. .+++..+  ++++++.|+ .+     ..+.+||..+
T Consensus       265 ~~v~~yd~~t-----~~W~~~~~~~~~R~~-~s~~~~~--dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          265 KKTSLYDSSS-----DSWIPGPDMQVARGY-QSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             TCEEEEEGGG-----TEEEECCCCSSCCSS-CEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CceEEecCcC-----CceeECCCCCccccc-cceEEec--CCeEEEEeCcccCCcccccceEeCCCC
Confidence            5799999875     356665544433222 3445555  788888888 34     4689999875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.76  E-value=0.052  Score=41.00  Aligned_cols=105  Identities=12%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC------CeEEEEEeee
Q 026295           20 CGQRLATGSTD----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD------GSLLLWEEIV   89 (240)
Q Consensus        20 ~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd~~~   89 (240)
                      +++.++.|+.+    ..+.+||+...   +|..+..+.........+.+  +  +.+++.|+.+      ..+.+||...
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~~d~~~  127 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKD---SWYSKLGPPTPRDSLAACAA--E--GKIYTSGGSEVGNSALYLFECYDTRT  127 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTT---EEEEEECCSSCCBSCEEEEE--T--TEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCC---eEEECCCCCccccceeEEEE--C--CEEEEECCCCCCCcEeeeEEEEeCCC
Confidence            56677777754    56888888754   67666554322222222222  4  6677777655      3577778755


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC---------CCcEEEEEecC
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS---------DGHVKVYELLD  140 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~---------dg~v~iw~~~~  140 (240)
                           ..|..+..+.........+.+    ++.+++.|+.         -..+.+||+.+
T Consensus       128 -----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          128 -----ESWHTKPSMLTQRCSHGMVEA----NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             -----TEEEEECCCSSCCBSCEEEEE----TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             -----CceEeCCCCcCCcceeEEEEE----CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence                 356666555433333223332    6666666653         34578888876

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=96.75  E-value=0.1  Score=38.61  Aligned_cols=170  Identities=9%  Similarity=0.031  Sum_probs=94.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee------ecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK------VHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      ....+++.+++.++++.-.++.+.++++....  ....+....      ..+...-.|+|.|.  ++.|.++.......+
T Consensus        71 D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~--~i~~~~~~~~~~~~~~~N~g~EGLA~d~~--~~~L~va~E~~p~~i  146 (255)
T 3qqz_A           71 DLETIEYIGDNQFVISDERDYAIYVISLTPNS--EVKILKKIKIPLQESPTNCGFEGLAYSRQ--DHTFWFFKEKNPIEV  146 (255)
T ss_dssp             SEEEEEECSTTEEEEEETTTTEEEEEEECTTC--CEEEEEEEECCCSSCCCSSCCEEEEEETT--TTEEEEEEESSSEEE
T ss_pred             ChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC--eeeeeeeeccccccccccCCcceEEEeCC--CCEEEEEECcCCceE
Confidence            46678888888776776667889899886543  212222221      12344679999998  777777766656677


Q ss_pred             EEeeeccCCCcccEEEEE--ee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           85 WEEIVEDAQPLQWKLCKS--FE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~--~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      |.+..... .........  +.  ........++++|. .+.+++.......+..+|...       +....+.-.... 
T Consensus       147 ~~~~g~~~-~~~l~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g-------~~~~~~~L~~g~-  216 (255)
T 3qqz_A          147 YKVNGLLS-SNELHISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVG-------EVIGEMSLTKGS-  216 (255)
T ss_dssp             EEEESTTC-SSCCEEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTC-------CEEEEEECSTTG-
T ss_pred             EEEccccc-CCceeeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCC-------CEEEEEEcCCcc-
Confidence            77752100 011122111  00  12235688999984 556666666777788888663       333332211100 


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                      ....+..-....|++.|++.      |.+.+..     +.++.|.
T Consensus       217 ~~l~~~~~qpEGia~d~~G~------lyIvsE~-----n~~y~f~  250 (255)
T 3qqz_A          217 RGLSHNIKQAEGVAMDASGN------IYIVSEP-----NRFYRFT  250 (255)
T ss_dssp             GGCSSCCCSEEEEEECTTCC------EEEEETT-----TEEEEEE
T ss_pred             CCcccccCCCCeeEECCCCC------EEEEcCC-----ceEEEEE
Confidence            00000011223899999985      5555777     7665554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.73  E-value=0.11  Score=44.84  Aligned_cols=73  Identities=8%  Similarity=-0.074  Sum_probs=44.5

Q ss_pred             EEEEECCCCCEEEEEeCCC-----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC---CeEEE
Q 026295           13 TSSSWNYCGQRLATGSTDG-----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD---GSLLL   84 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~-----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---~~v~i   84 (240)
                      ..++|+|||+.|+....|.     .|.++++..... ....+..- ........+.|+|+  |++|+....+   ..|.+
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~-~~~lv~~~-~~~~~~~~~~~SpD--g~~l~~~~~~~~~~~l~~  299 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS-EDVCLYEE-HNPLFSAFMYKAAD--TNTLCIGSQSPETAEVHL  299 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG-GCEEEEEC-CCTTCEEEEEECTT--SSEEEEEEECSSCEEEEE
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch-hcEEEEec-CCCceEEEEEECCC--CCEEEEEecCCCCceEEE
Confidence            4679999999888777652     466777753210 11222211 22234567899999  9887765532   35677


Q ss_pred             EEeee
Q 026295           85 WEEIV   89 (240)
Q Consensus        85 wd~~~   89 (240)
                      +|+..
T Consensus       300 ~d~~~  304 (751)
T 2xe4_A          300 LDLRK  304 (751)
T ss_dssp             EESSS
T ss_pred             EECCC
Confidence            77754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.69  E-value=0.1  Score=39.25  Aligned_cols=159  Identities=17%  Similarity=0.199  Sum_probs=82.2

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC-----eEEEEEeee
Q 026295           20 CGQRLATGSTD-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG-----SLLLWEEIV   89 (240)
Q Consensus        20 ~~~~l~~~~~d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~   89 (240)
                      +++.++.|+.+     ..+.+||....   +|+.+..+.........+.+  +  +.+++.|+.++     .+.+||+..
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~d~~~  133 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKD---QWTSVANMRDRRSTLGAAVL--N--GLLYAVGGFDGSTGLSSVEAYNIKS  133 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTT---EEEEECCCSSCCBSCEEEEE--T--TEEEEEEEECSSCEEEEEEEEETTT
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCC---ceeeCCCCCccccceEEEEE--C--CEEEEEcCCCCCccCceEEEEeCCC
Confidence            56677777754     35788888754   67666554422222222222  4  66777776554     455666544


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-------CcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-------GHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                           ..|..+..+.........+.+    ++.+++.|+.+       ..+.+||+.+    ..|..+..+....     
T Consensus       134 -----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~r-----  195 (302)
T 2xn4_A          134 -----NEWFHVAPMNTRRSSVGVGVV----GGLLYAVGGYDVASRQCLSTVECYNATT----NEWTYIAEMSTRR-----  195 (302)
T ss_dssp             -----TEEEEECCCSSCCBSCEEEEE----TTEEEEECCEETTTTEECCCEEEEETTT----TEEEEECCCSSCC-----
T ss_pred             -----CeEeecCCCCCcccCceEEEE----CCEEEEEeCCCCCCCccccEEEEEeCCC----CcEEECCCCcccc-----
Confidence                 457766555443333233332    66666766542       3477888765    2355443221110     


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA  217 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~  217 (240)
                         ...   ++... ++.     +++.|+.+.......+.+||..+.  .|....
T Consensus       196 ---~~~---~~~~~-~~~-----iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~  236 (302)
T 2xn4_A          196 ---SGA---GVGVL-NNL-----LYAVGGHDGPLVRKSVEVYDPTTN--AWRQVA  236 (302)
T ss_dssp             ---BSC---EEEEE-TTE-----EEEECCBSSSSBCCCEEEEETTTT--EEEEEC
T ss_pred             ---ccc---cEEEE-CCE-----EEEECCCCCCcccceEEEEeCCCC--CEeeCC
Confidence               000   12211 222     777887652222246777776543  355443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.68  E-value=0.14  Score=39.10  Aligned_cols=173  Identities=8%  Similarity=-0.068  Sum_probs=86.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeeccCCCcccEEEE
Q 026295           23 RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      +|+.+.. ..|+..++....     ....+. ....+..+.|.+.  +..|. +-...+.|..+++...... .  ....
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~-----~~~~~~-~~~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~-~--~~~~   70 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSE-----YTSLIP-NLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGV-S--SYDT   70 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCC-----CEEEEC-SCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC-----------CEE
T ss_pred             EEEEECC-CeEEEEECCCcc-----eEehhc-CCCceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCC-c--ccEE
Confidence            3444443 568888987431     122222 2355779999886  55444 4445678888887641000 0  1111


Q ss_pred             EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCC
Q 026295          102 SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE  181 (240)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~  181 (240)
                      .+...-.....+++++. .+.++++-..++.|.++++...      .....+......          .+.++.+|.+. 
T Consensus        71 ~~~~~~~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~----------P~~iavdp~~g-  132 (316)
T 1ijq_A           71 VISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSK----------PRAIVVDPVHG-  132 (316)
T ss_dssp             EECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCC----------EEEEEEETTTT-
T ss_pred             EEeCCCCCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCC------ceEEEEECCCCC----------cceEEeCCCCC-
Confidence            12222234577888751 3444455566788988887531      111111111111          13788898665 


Q ss_pred             CCCceEEEEecC-CCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCCC
Q 026295          182 NQGSSFVLGFNS-DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIGR  240 (240)
Q Consensus       182 ~~~~~l~~~~~d-d~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~  240 (240)
                          .|..+... .    +.|..++++... . ...  ...   .-...+.|+|+|+.++
T Consensus       133 ----~ly~~d~~~~----~~I~~~~~dG~~-~-~~~--~~~---~~~~P~gla~d~~~~~  177 (316)
T 1ijq_A          133 ----FMYWTDWGTP----AKIKKGGLNGVD-I-YSL--VTE---NIQWPNGITLDLLSGR  177 (316)
T ss_dssp             ----EEEEEECSSS----CEEEEEETTSCC-E-EEE--ECS---SCSCEEEEEEETTTTE
T ss_pred             ----EEEEEccCCC----CeEEEEcCCCCC-e-EEE--EEC---CCCCceEEEEeccCCE
Confidence                44444432 1    456666654322 1 111  111   1125688999987653

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.61  E-value=0.16  Score=38.92  Aligned_cols=159  Identities=4%  Similarity=-0.166  Sum_probs=85.2

Q ss_pred             ceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ....++|++.+.. +.+-...+.|..+++.....  .+.  .+...-.....+++.+. .+.++++-...+.|.++++..
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~--~~~--~~~~~l~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG  110 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES--VQN--VVVSGLLSPDGLACDWL-GEKLYWTDSETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC--CCE--EEEECCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc--eEE--EEcCCCCCccEEEEEcC-CCeEEEEECCCCEEEEEECCC
Confidence            3567888885544 44444567888888764311  011  11111234557788764 144555545567888888754


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe--CCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      .       .....+.........++++|  .+..|....  ..+.|...++..       .....+....         .
T Consensus       111 ~-------~~~~l~~~~~~~P~giavdp--~~g~ly~td~~~~~~I~r~~~dG-------~~~~~~~~~~---------l  165 (318)
T 3sov_A          111 S-------LRKVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSE---------I  165 (318)
T ss_dssp             C-------SCEEEECSSCSSEEEEEEEG--GGTEEEEEECSSSCEEEEEETTS-------CSCEEEECSS---------C
T ss_pred             C-------cEEEEEeCCCCCccEEEEeC--CCCEEEEEecCCCCEEEEEEcCC-------CCeEEEEECC---------C
Confidence            2       11111222334568899988  554454444  246676666542       1111111110         0


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ...+.++|+|+..     .|..+....    +.|..++++.
T Consensus       166 ~~Pnglavd~~~~-----~lY~aD~~~----~~I~~~d~dG  197 (318)
T 3sov_A          166 YWPNGLTLDYEEQ-----KLYWADAKL----NFIHKSNLDG  197 (318)
T ss_dssp             SCEEEEEEETTTT-----EEEEEETTT----TEEEEEETTS
T ss_pred             CCccEEEEeccCC-----EEEEEECCC----CEEEEEcCCC
Confidence            1124899998765     455554432    7888888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.54  E-value=0.098  Score=43.69  Aligned_cols=25  Identities=12%  Similarity=0.187  Sum_probs=21.1

Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCcce
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLP  215 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~  215 (240)
                      ++.+|+.|     +.++.||..+++..|..
T Consensus       499 lvf~g~~d-----g~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          499 LVFTGTGD-----GYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EEEEECTT-----SEEEEEETTTCCEEEEE
T ss_pred             EEEEECCC-----CcEEEEECCCCCEEEEe
Confidence            67778887     99999999998877765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.52  E-value=0.067  Score=44.57  Aligned_cols=61  Identities=13%  Similarity=-0.054  Sum_probs=36.7

Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      ++.|..||..++       +.+-.+... ..+....+..  .+..++.++.||.|+.+|.++      ++.+.++..
T Consensus       443 ~g~l~a~D~~tG-------~~~W~~~~~-~~~~~~~~~t--~gg~v~~g~~dg~l~a~D~~t------G~~lw~~~~  503 (571)
T 2ad6_A          443 MGQIRAFDLTTG-------KAKWTKWEK-FAAWGGTLYT--KGGLVWYATLDGYLKALDNKD------GKELWNFKM  503 (571)
T ss_dssp             CEEEEEECTTTC-------CEEEEEEES-SCCCSBCEEE--TTTEEEEECTTSEEEEEETTT------CCEEEEEEC
T ss_pred             CCeEEEEECCCC-------CEEEEecCC-CCccceeEEE--CCCEEEEEcCCCeEEEEECCC------CCEEEEEeC
Confidence            467777777655       443333322 2222233333  455677789999999999987      555555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=96.50  E-value=0.19  Score=42.17  Aligned_cols=69  Identities=10%  Similarity=0.016  Sum_probs=42.9

Q ss_pred             EEEECCCCCEEEEEeCCC----------------cEEEEeCCCCCCCcEEEEeEeee--cC--------ccEEEEEEc-C
Q 026295           14 SSSWNYCGQRLATGSTDG----------------TLSIFDSPDPSSSSFTCNLKTKV--HA--------GAILKVVWV-P   66 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~----------------~i~iw~~~~~~~~~~~~~~~~~~--h~--------~~v~~~~~~-~   66 (240)
                      .++++++..++..+..++                .|.-+|..     +++.+-.++.  |.        .++. +... .
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~-----TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~  318 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDAD-----TGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDK  318 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETT-----TCCEEEEEESSTTCSSCCCCCCCCEE-EEEECT
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCC-----CCceeeEeecCCCccccccCCCccEE-Eecccc
Confidence            356667777777776553                67788887     5555555542  21        1222 2221 3


Q ss_pred             CCCC---CEEEEEecCCeEEEEEeeec
Q 026295           67 PEFG---DAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        67 ~~~~---~~l~s~~~d~~v~iwd~~~~   90 (240)
                      +  |   ..++.++.+|.+.++|..++
T Consensus       319 ~--G~~~~~v~~~~~~G~l~~lD~~tG  343 (599)
T 1w6s_A          319 D--GKARKLLTHPDRNGIVYTLDRTDG  343 (599)
T ss_dssp             T--SCEEEEEEEECTTSEEEEEETTTC
T ss_pred             C--CcEEEEEEEECCCcEEEEEECCCC
Confidence            4  6   46777889999999998665

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.44  E-value=0.093  Score=43.84  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=35.8

Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      ++.|..||+.++       +.+-..... ..+..-....  .+..++.++.||.++.||.++      ++.+-++..
T Consensus       465 ~G~l~A~D~~tG-------~~~W~~~~~-~~~~~g~~~t--agglvf~g~~dg~l~A~D~~t------G~~lW~~~~  525 (582)
T 1flg_A          465 VGSLRAMDPVSG-------KVVWEHKEH-LPLWAGVLAT--AGNLVFTGTGDGYFKAFDAKS------GKELWKFQT  525 (582)
T ss_dssp             SEEEEEECTTTC-------CEEEEEEES-SCCCSCCEEE--TTTEEEEECTTSEEEEEETTT------CCEEEEEEC
T ss_pred             cceEEEEECCCC-------CEEEEecCC-CCCcccceEe--CCCEEEEECCCCcEEEEECCC------CCEEEEecC
Confidence            466777777655       333333322 1222212222  455677899999999999988      555555544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.43  E-value=0.14  Score=43.55  Aligned_cols=61  Identities=15%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      ++.|..||+.++       +.+-..... .......+..  .+.++++++.||.++.||.++      ++.+..+..
T Consensus       437 ~g~l~A~D~~tG-------~~~W~~~~~-~~~~~~~~~t--~gg~vf~g~~dg~l~a~d~~t------G~~l~~~~~  497 (668)
T 1kv9_A          437 SGALLAWDPVKQ-------KAAWKVPYP-THWNGGTLST--AGNLVFQGTAAGQMHAYSADK------GEALWQFEA  497 (668)
T ss_dssp             EEEEEEEETTTT-------EEEEEEEES-SSCCCCEEEE--TTTEEEEECTTSEEEEEETTT------CCEEEEEEC
T ss_pred             cceEEEEeCCCC-------cEEEEccCC-CCCcCceeEe--CCCEEEEECCcccchhhhhhc------ChhheEecC
Confidence            367888888766       544444432 2233344555  677788899999999999987      555555543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.42  E-value=0.41  Score=41.47  Aligned_cols=187  Identities=12%  Similarity=0.042  Sum_probs=101.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee------ecCccEEEEEEcCCCCCCEEEEEecCCeEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK------VHAGAILKVVWVPPEFGDAVACICSDGSLL   83 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~   83 (240)
                      ..|.++..+++|++-+ |+.++-|..|+....   .......-.      .....|.++...++  +.+|..|+.++-|.
T Consensus       357 ~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~~lWigt~~~Gl~  430 (795)
T 4a2l_A          357 NVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQ---RFTSYTLQEDESARGIGSNNIKAVYVDEK--KSLVYIGTHAGGLS  430 (795)
T ss_dssp             SSEEEEEECTTSCEEE-EESSSCEEEECTTTC---CEEEECCC------CCSCSCEEEEEEETT--TTEEEEEETTTEEE
T ss_pred             CeeEEEEECCCCCEEE-EECCCCeEEEcCCCC---cEEEEecCCCCcccCCCCccEEEEEEcCC--CCEEEEEeCcCcee
Confidence            4689999999887554 666667888887632   222221100      11356889988777  77456667767788


Q ss_pred             EEEeeeccCCCcccEEEEEee-----eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE-----STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      ++|...+       + ...+.     .....|.++...+  ++. |..|+.+| +.+|+..+      .+.. .+.....
T Consensus       431 ~~d~~~~-------~-~~~~~~~~~~l~~~~v~~i~~d~--~g~-lwigt~~G-l~~~~~~~------~~~~-~~~~~~~  491 (795)
T 4a2l_A          431 ILHRNSG-------Q-VENFNQRNSQLVNENVYAILPDG--EGN-LWLGTLSA-LVRFNPEQ------RSFT-TIEKEKD  491 (795)
T ss_dssp             EEETTTC-------C-EEEECTTTSCCSCSCEEEEEECS--SSC-EEEEESSC-EEEEETTT------TEEE-ECCBCTT
T ss_pred             EEeCCCC-------c-EEEeecCCCCcCCCeeEEEEECC--CCC-EEEEecCc-eeEEeCCC------CeEE-Ecccccc
Confidence            8887653       2 22221     1235688888766  777 55555544 88888765      1211 1111000


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                         +.+.....+.++...+++.      |-+|..      +-|..|+..+...  ..........-....|.++...+++
T Consensus       492 ---~~~~~~~~i~~i~~d~~g~------lWigt~------~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g  554 (795)
T 4a2l_A          492 ---GTPVVSKQITTLFRDSHKR------LWIGGE------EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNG  554 (795)
T ss_dssp             ---CCBCCCCCEEEEEECTTCC------EEEEES------SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred             ---ccccCCceEEEEEECCCCC------EEEEeC------CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCC
Confidence               0000011233777777774      555554      3477788765431  1100000001123467888777765

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.38  E-value=0.12  Score=41.13  Aligned_cols=121  Identities=13%  Similarity=0.247  Sum_probs=76.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCC---CC-----cEEEEeEeee------cCccEEEEEEcCCC-CCCEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPS---SS-----SFTCNLKTKV------HAGAILKVVWVPPE-FGDAVAC   75 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~---~~-----~~~~~~~~~~------h~~~v~~~~~~~~~-~~~~l~s   75 (240)
                      .|..+..+|+|++||..+. ..|.|-.+..+.   .+     ..+ ...+.-      ...+|..+.|+|-. .+..|++
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV  144 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV  144 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence            5778999999999999876 588888886321   00     011 122321      24679999999872 1357888


Q ss_pred             EecCCeEEEEEeeeccCCCcccEE---EEEeeeccccEEeEEEeecCCCcEEEEEe--CCCcEEE
Q 026295           76 ICSDGSLLLWEEIVEDAQPLQWKL---CKSFESTSTQVLDVQFGVSSTSLKLVAAY--SDGHVKV  135 (240)
Q Consensus        76 ~~~d~~v~iwd~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~i  135 (240)
                      -..|+.|++||+......+...+.   ...+......|.+++|..  ++..|...+  ..|.|.-
T Consensus       145 LtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~--~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          145 LKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK--DGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT--TSSCEEEEECTTSCEEEE
T ss_pred             EecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC--CCcEEEEEecCCCCCEEE
Confidence            899999999999763221110000   011112336788999987  776666644  7777643

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.31  E-value=0.31  Score=38.87  Aligned_cols=115  Identities=11%  Similarity=0.141  Sum_probs=70.5

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc-CCC-
Q 026295           19 YCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED-AQP-   94 (240)
Q Consensus        19 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~-   94 (240)
                      .+|..++.+-. +.||.-++....  ..+.+. +..  .-..|..+..+|+  |.+|+..+ +..|.|-.+..+. ... 
T Consensus        30 ~n~t~i~~a~~-n~iR~~~i~~~~--~Yk~L~-~~~~i~f~~i~qlvlSps--G~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           30 QNGTRIVFIQD-NIIRWYNVLTDS--LYHSLN-FSRHLVLDDTFHVISSTS--GDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             TTTTEEEEEET-TEEEEEETTTCS--SCEEEE-CTTTCCCCTTCEEEECTT--SSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             cCCCEEEEEEC-CEEEEEECCCCC--cceEEe-cCcccccCceeEEEECCC--CCEEEEec-CCeEEEEEecCccccCcc
Confidence            34555555433 567776765321  222221 211  1235778999999  99998875 5688888876221 110 


Q ss_pred             ----cccEEEEEeee------ccccEEeEEEeec-CCCcEEEEEeCCCcEEEEEecCc
Q 026295           95 ----LQWKLCKSFES------TSTQVLDVQFGVS-STSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        95 ----~~~~~~~~~~~------~~~~v~~~~~~~~-~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                          ...+ .+.+.-      ....|..+.|+|- ..+..|++-..|++|++||+...
T Consensus       103 ~~~~~~~q-~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          103 VSIQDAFQ-IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HHHHHTTE-EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccccccc-eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                1112 233332      2467999999983 23457999999999999999863

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.28  E-value=0.23  Score=37.59  Aligned_cols=109  Identities=10%  Similarity=0.032  Sum_probs=59.0

Q ss_pred             EECCCCCEEEEEeC-----C------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-----
Q 026295           16 SWNYCGQRLATGST-----D------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-----   79 (240)
Q Consensus        16 ~~s~~~~~l~~~~~-----d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----   79 (240)
                      ....+++.++.|+.     .      ..+.+||....   +|+.+..+.........+.+  +  +.+++.|+.+     
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~lyv~GG~~~~~~~  113 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS---EWLGMPPLPSPRCLFGLGEA--L--NSIYVVGGREIKDGE  113 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTT---EEEECCCBSSCEESCEEEEE--T--TEEEEECCEESSTTC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCC---eEEECCCCCcchhceeEEEE--C--CEEEEEeCCcCCCCC
Confidence            33457778888873     1      12667887643   56555443321111112222  3  5666666632     


Q ss_pred             ---CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-C-----CcEEEEEecC
Q 026295           80 ---GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-D-----GHVKVYELLD  140 (240)
Q Consensus        80 ---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~v~iw~~~~  140 (240)
                         ..+.+||..+     ..|..+..+.........+.  .  ++.+++.|+. +     ..+.+||+.+
T Consensus       114 ~~~~~~~~~d~~~-----~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~yd~~~  174 (315)
T 4asc_A          114 RCLDSVMCYDRLS-----FKWGESDPLPYVVYGHTVLS--H--MDLVYVIGGKGSDRKCLNKMCVYDPKK  174 (315)
T ss_dssp             CBCCCEEEEETTT-----TEEEECCCCSSCCBSCEEEE--E--TTEEEEECCBCTTSCBCCCEEEEETTT
T ss_pred             cccceEEEECCCC-----CcEeECCCCCCcccceeEEE--E--CCEEEEEeCCCCCCcccceEEEEeCCC
Confidence               3577777754     35676655544333333333  2  6677777775 2     3588888875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.28  E-value=0.07  Score=40.41  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=81.1

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC-----CeEEEE
Q 026295           20 CGQRLATGST----D-----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD-----GSLLLW   85 (240)
Q Consensus        20 ~~~~l~~~~~----d-----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----~~v~iw   85 (240)
                      ++++++.|+.    +     ..+.+||+...   +++.+..+.........+.+  +  +.+++.|+.+     ..+.+|
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~y  142 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN---QWSPCAPMSVPRNRIGVGVI--D--GHIYAVGGSHGCIHHNSVERY  142 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTT---EEEECCCCSSCCBTCEEEEE--T--TEEEEECCEETTEECCCEEEE
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCC---eEeECCCCCcCccccEEEEE--C--CEEEEEcCCCCCcccccEEEE
Confidence            5666777665    2     45788888744   66665544322222222222  4  5666666543     356677


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEeeeeccccee
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      |..+     ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+..+....   
T Consensus       143 d~~~-----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~~~p~~r---  206 (308)
T 1zgk_A          143 EPER-----DEWHLVAPMLTRRIGVGVAVL----NRLLYAVGGFDGTNRLNSAECYYPER----NEWRMITAMNTIR---  206 (308)
T ss_dssp             ETTT-----TEEEECCCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTT----TEEEECCCCSSCC---
T ss_pred             CCCC-----CeEeECCCCCccccceEEEEE----CCEEEEEeCCCCCCcCceEEEEeCCC----CeEeeCCCCCCcc---
Confidence            7654     356665554433333233333    56777777654     4578888765    2355443221110   


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeE
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVA  217 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~  217 (240)
                           ...  ..+.+  ++.     +++.|+.++......+.+||+.+.  .|....
T Consensus       207 -----~~~--~~~~~--~~~-----iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~  247 (308)
T 1zgk_A          207 -----SGA--GVCVL--HNC-----IYAAGGYDGQDQLNSVERYDVETE--TWTFVA  247 (308)
T ss_dssp             -----BSC--EEEEE--TTE-----EEEECCBCSSSBCCCEEEEETTTT--EEEECC
T ss_pred             -----ccc--eEEEE--CCE-----EEEEeCCCCCCccceEEEEeCCCC--cEEECC
Confidence                 001  02222  232     777777653222356777776553  354443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.24  E-value=0.2  Score=37.97  Aligned_cols=108  Identities=9%  Similarity=0.028  Sum_probs=57.1

Q ss_pred             ECCCCCEEEEEeC----CC-------cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC------
Q 026295           17 WNYCGQRLATGST----DG-------TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD------   79 (240)
Q Consensus        17 ~s~~~~~l~~~~~----d~-------~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------   79 (240)
                      ...++..++.|+.    ++       .+.+||....   +|..+..+.........+.+  +  +.+++.|+.+      
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~  125 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS---EWVGLPPLPSARCLFGLGEV--D--DKIYVVAGKDLQTEAS  125 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTT---EEEECSCBSSCBCSCEEEEE--T--TEEEEEEEEBTTTCCE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCC---cEEECCCCCccccccceEEE--C--CEEEEEcCccCCCCcc
Confidence            3456777777773    12       1667887643   66655444321111222222  4  5666777653      


Q ss_pred             -CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC------CCcEEEEEecC
Q 026295           80 -GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS------DGHVKVYELLD  140 (240)
Q Consensus        80 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------dg~v~iw~~~~  140 (240)
                       ..+.+||...     ..|..+..+.........+.  .  ++.+++.|+.      -..+.+||+.+
T Consensus       126 ~~~~~~yd~~~-----~~W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          126 LDSVLCYDPVA-----AKWSEVKNLPIKVYGHNVIS--H--NGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             EEEEEEEETTT-----TEEEEECCCSSCEESCEEEE--E--TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             cceEEEEeCCC-----CCEeECCCCCCcccccEEEE--E--CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence             2356666644     45776655443322222222  3  6776777763      23588888876

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.22  E-value=0.36  Score=38.93  Aligned_cols=114  Identities=9%  Similarity=-0.049  Sum_probs=60.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee------cCccEEEEEEcCC--CCCCEEEEEec----
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV------HAGAILKVVWVPP--EFGDAVACICS----   78 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~--~~~~~l~s~~~----   78 (240)
                      .-+.++|.|+|+++++-...+.|++++....   ....+..+..      -.+....|+|+|+  ..+.+.++-+.    
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g---~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCC---cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            4578999999987777544456888775421   2233333321      2456789999983  01554444432    


Q ss_pred             --------CCeEEEEEeeeccCCCcccEEEE-Eeee-ccccEEeEEEeecCCCcEEEEEeC
Q 026295           79 --------DGSLLLWEEIVEDAQPLQWKLCK-SFES-TSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        79 --------d~~v~iwd~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                              ...|.-+++...+......+.+. .+.. .......|.|.|  +|.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p--DG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP--DQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT--TSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC--CCeEEEEECC
Confidence                    12444454432211000112222 2221 224568899998  8886665543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.18  E-value=0.077  Score=44.95  Aligned_cols=120  Identities=11%  Similarity=0.064  Sum_probs=71.3

Q ss_pred             EEEEcC-CCCCCEEEEEecCC-----------eEEEEEeeeccCCCcccEEEEEeeecc-ccEEeEEEeecCCCcEEEEE
Q 026295           61 KVVWVP-PEFGDAVACICSDG-----------SLLLWEEIVEDAQPLQWKLCKSFESTS-TQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        61 ~~~~~~-~~~~~~l~s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~~~  127 (240)
                      ..++.+ +  +++++.|+.+.           .+.+||...+     .|..+..+.... ....++++.+  ++.+++.|
T Consensus       190 ~~av~~~~--g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-----~w~~~~~~~~~~~~~~~~~~~~~--~g~lyv~G  260 (656)
T 1k3i_A          190 AAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-----IVSDRTVTVTKHDMFCPGISMDG--NGQIVVTG  260 (656)
T ss_dssp             EEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-----CBCCCEEEECSCCCSSCEEEECT--TSCEEEEC
T ss_pred             eEEEEecC--CEEEEEecccccccccCCCCeEEEEEEeCCCC-----cEEeCcccCCCCCCccccccCCC--CCCEEEeC
Confidence            455666 6  78888877543           5778887653     456555554322 2334466666  88888888


Q ss_pred             e-CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEec-CCCCCCCeEEEEE
Q 026295          128 Y-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFN-SDTPQLNSSKVWE  205 (240)
Q Consensus       128 ~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~-dd~~~~~~i~iw~  205 (240)
                      + .+..+.+||+.+    ..|.....+.....        ..   ++...+++.     +++.|+. +.......+.+||
T Consensus       261 G~~~~~v~~yd~~t----~~W~~~~~~~~~R~--------~~---s~~~~~dg~-----iyv~GG~~~~~~~~~~~e~yd  320 (656)
T 1k3i_A          261 GNDAKKTSLYDSSS----DSWIPGPDMQVARG--------YQ---SSATMSDGR-----VFTIGGSWSGGVFEKNGEVYS  320 (656)
T ss_dssp             SSSTTCEEEEEGGG----TEEEECCCCSSCCS--------SC---EEEECTTSC-----EEEECCCCCSSSCCCCEEEEE
T ss_pred             CCCCCceEEecCcC----CceeECCCCCcccc--------cc---ceEEecCCe-----EEEEeCcccCCcccccceEeC
Confidence            8 445799999876    23554432221110        01   445556665     8888883 3222235788888


Q ss_pred             eecC
Q 026295          206 FDEA  209 (240)
Q Consensus       206 ~~~~  209 (240)
                      ..+.
T Consensus       321 ~~t~  324 (656)
T 1k3i_A          321 PSSK  324 (656)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.17  E-value=0.28  Score=37.13  Aligned_cols=112  Identities=10%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             CCCEEEEEeCC--------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-C-----CeEEEE
Q 026295           20 CGQRLATGSTD--------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-D-----GSLLLW   85 (240)
Q Consensus        20 ~~~~l~~~~~d--------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d-----~~v~iw   85 (240)
                      +++.++.|+.+        ..+.+||....   +|+.+..+.........+.  .+  +.+++.|+. +     ..+.+|
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~---~W~~~~~~p~~r~~~~~~~--~~--~~iyv~GG~~~~~~~~~~~~~y  170 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSF---KWGESDPLPYVVYGHTVLS--HM--DLVYVIGGKGSDRKCLNKMCVY  170 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTT---EEEECCCCSSCCBSCEEEE--ET--TEEEEECCBCTTSCBCCCEEEE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCC---cEeECCCCCCcccceeEEE--EC--CEEEEEeCCCCCCcccceEEEE
Confidence            55666666632        35888888744   6666654432222122222  23  566667665 2     357778


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC-----cEEEEEecCcccccceeEEe
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG-----HVKVYELLDPLILKNWQLQA  151 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg-----~v~iw~~~~~~~~~~~~~~~  151 (240)
                      |...     ..|..+..+.........+.+    ++.+++.|+.++     .+.+||+.+    .+|..+.
T Consensus       171 d~~~-----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~  228 (315)
T 4asc_A          171 DPKK-----FEWKELAPMQTARSLFGATVH----DGRIIVAAGVTDTGLTSSAEVYSITD----NKWAPFE  228 (315)
T ss_dssp             ETTT-----TEEEECCCCSSCCBSCEEEEE----TTEEEEEEEECSSSEEEEEEEEETTT----TEEEEEC
T ss_pred             eCCC-----CeEEECCCCCCchhceEEEEE----CCEEEEEeccCCCCccceEEEEECCC----CeEEECC
Confidence            7754     356766555433333333333    667777777654     477788765    2365543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.01  E-value=0.11  Score=41.50  Aligned_cols=114  Identities=9%  Similarity=0.065  Sum_probs=67.3

Q ss_pred             cceEEEEECCCCCEEEEEeCC-C----cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcC-CCCCCEEEEEecCCeEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTD-G----TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVP-PEFGDAVACICSDGSLL   83 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d-~----~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~d~~v~   83 (240)
                      .....++|+++|++|..+... +    .+.+++....    ......+.. ......+++.| +  +.++++-..++.|.
T Consensus       179 ~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~----~~~~~~l~~-~~~p~giavdp~~--g~lyv~d~~~~~V~  251 (430)
T 3tc9_A          179 SKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG----FKVITELTK-GQNCNGAETHPIN--GELYFNSWNAGQVF  251 (430)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT----SCSEEEEEE-CSSCCCEEECTTT--CCEEEEETTTTEEE
T ss_pred             CCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc----eeeeeeecc-CCCceEEEEeCCC--CEEEEEECCCCEEE
Confidence            356789999999966666542 2    2333443321    110112221 23456788988 5  77666666678888


Q ss_pred             EEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEec
Q 026295           84 LWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELL  139 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~  139 (240)
                      .++....       ........ .......++|+|  ++.+| ++-...+.|..++..
T Consensus       252 ~~~~~~~-------~~~~~~~~~~~~~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          252 RYDFTTQ-------ETTPLFTIQDSGWEFHIQFHP--SGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             EEETTTT-------EEEEEEECSSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEE
T ss_pred             EEECCCC-------cEEEEEEcCCCCcceeEEEcC--CCCEEEEEECCCCEEEEEeCC
Confidence            8887643       22111111 123467899999  89844 444567888888875

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=95.94  E-value=0.49  Score=37.89  Aligned_cols=116  Identities=13%  Similarity=0.079  Sum_probs=65.1

Q ss_pred             eEEEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcE-EEEeEeeecCccEEEEEEcCCCCCCEEEEE-ecCCeEEEEEee
Q 026295           12 TTSSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSF-TCNLKTKVHAGAILKVVWVPPEFGDAVACI-CSDGSLLLWEEI   88 (240)
Q Consensus        12 v~~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~   88 (240)
                      ...++++| +|.+.++-..++.|+.++....   .. ..+..... ...-..++|+|+  ++.|..+ ...+.|+.+++.
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g---~~~~~~~~~~~-~~~~~~ia~dpd--G~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATG---TLTEEEVMMDT-KGSNFHIVWHPT--GDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTC---CEEEEEEECSC-CSSCEEEEECTT--SSEEEEEETTTTEEEEEEBC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCC---eEEEEEeccCC-CCCcccEEEeCC--CCEEEEEeCCCCEEEEEeCC
Confidence            45688899 6666666666788888888622   21 11211111 122346999999  8855444 446788887765


Q ss_pred             eccCCCcccEEEEEeee---------------ccccEEeEEE---------eecCCCcEEEEEeCCCcEEEEEe
Q 026295           89 VEDAQPLQWKLCKSFES---------------TSTQVLDVQF---------GVSSTSLKLVAAYSDGHVKVYEL  138 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~---------------~~~~v~~~~~---------~~~~~~~~l~~~~~dg~v~iw~~  138 (240)
                      .....   +.....+.+               .-.....+++         .+  ++.++++-..++.|+.++.
T Consensus       304 ~~~~~---~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~--~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          304 RETGK---LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED--EYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             TTTCC---BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC--CEEEEEEETTTTEEEEECT
T ss_pred             CCCcc---cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC--CCcEEEEECCCCEEEEECC
Confidence            22110   000011111               0123466888         55  6776666667778888874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=95.87  E-value=0.016  Score=49.55  Aligned_cols=162  Identities=6%  Similarity=-0.117  Sum_probs=81.2

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .+..++|++.+.+|.... ..+.|+.+++...... ......+.........|++.+. .+.++++-...+.|.+.++..
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-~~~~~~i~~~~~~P~glavD~~-~g~LY~tD~~~~~I~v~d~dg  484 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-SSYDTVISRDIQAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKG  484 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC--CCCCCBCCSCC--CCCEECCCS-SSBCEECCTTTSCEEEEBSSS
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-cceEEEEeCCCCCcceEEEEee-CCcEEEEeccCCeEEEEecCC
Confidence            456788988766665554 4578888888641000 0011111111122446777644 144444444567888888764


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe-C-CCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY-S-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~-~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      .       .....+.........|+++|  .+.+|+... . .+.|..+++..       .....+....         +
T Consensus       485 ~-------~~~~l~~~~~~~P~giavDp--~~g~ly~td~~~~~~I~~~~~dG-------~~~~~l~~~~---------l  539 (699)
T 1n7d_A          485 V-------KRKTLFREQGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNG-------VDIYSLVTEN---------I  539 (699)
T ss_dssp             C-------CEEEECCCSSCCCCCEECCS--SSSCCEECCCSSSCCEEBCCSSS-------CCCCEESCSS---------C
T ss_pred             C-------ceEEEEeCCCCCcceEEEcc--CCCcEEEcccCCCCeEEEEeCCC-------CCeeEEEeCC---------C
Confidence            3       22222222223457788887  544444333 2 25666665542       1111111000         0


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ...+.|+|+|.+.     .|..+....    +.|..+++..
T Consensus       540 ~~PnGlavd~~~~-----~LY~aD~~~----~~I~~~d~dG  571 (699)
T 1n7d_A          540 QWPNGITLDLLSG-----RLYWVDSKL----HSISSIDVNG  571 (699)
T ss_dssp             SSCCCEEECTTTC-----CEEEEETTT----TEEEEECSSS
T ss_pred             CCccEEEEeccCC-----EEEEEecCC----CeEEEEccCC
Confidence            1123799998865     344443322    7888888764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.86  E-value=0.16  Score=36.66  Aligned_cols=109  Identities=8%  Similarity=-0.057  Sum_probs=60.6

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCC----cEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS----SFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .+..++|+|+|.+.+.  .+|.+.-.+.......    ....+-.. +... -.++.|.|+  |.+.++  .||.|.-++
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~-Gw~~-F~a~~fD~~--G~LYav--~dG~iyr~~  113 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNG-GWNQ-FQFLFFDPN--GYLYAV--SKDKLYKAS  113 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECS-CGGG-CSEEEECTT--SCEEEE--ETTEEEEES
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccc-cccc-ceEEEECCC--CCEEEe--CCCEEEEeC
Confidence            5779999999987777  5676544443211100    11111110 1111 468889888  887777  578876665


Q ss_pred             eeeccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcE
Q 026295           87 EIVEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHV  133 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v  133 (240)
                      -.  +.....|.-..+.-  ..=..+..|.|.|  +|.+.++.  |+.+
T Consensus       114 pP--~~~~~~Wl~~a~~vg~~gw~~~~~lff~p--~G~Lyav~--dg~l  156 (236)
T 1tl2_A          114 PP--QSDTDNWIARATEVGSGGWSGFKFLFFHP--NGYLYAVH--GQQF  156 (236)
T ss_dssp             CC--CSTTCCHHHHSEEEECSSGGGEEEEEECT--TSCEEEEE--TTEE
T ss_pred             CC--cCCCCceeccccEeccCCCCceEEEEECC--CceEEEEe--CCcE
Confidence            42  22223443221111  1124678899999  99855555  7774

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.86  E-value=0.58  Score=38.15  Aligned_cols=115  Identities=9%  Similarity=0.107  Sum_probs=63.9

Q ss_pred             ceEEEEECCC-C-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee---cCccEEEEEE-------cCCCCCCEEEEEec
Q 026295           11 GTTSSSWNYC-G-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV---HAGAILKVVW-------VPPEFGDAVACICS   78 (240)
Q Consensus        11 ~v~~~~~s~~-~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~---h~~~v~~~~~-------~~~~~~~~l~s~~~   78 (240)
                      ....|+|+|. + +++++-...+.|++.|+...     ........   .......|+|       +++  +..|+.+..
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-----~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~--G~~lyvad~  212 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-----MLSSPLNINTIPTNRIRSIAFNKKIEGYADE--AEYMIVAID  212 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT-----EEEEEECCTTSSCSBEEEEEECCCBTTTBCT--TCEEEEEEC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC-----EEEEEEccCccccCCCcEEEEeecccccCCC--CCEEEEEeC
Confidence            3568999983 4 44444444467888888743     22222211   1235789999       998  886666554


Q ss_pred             CC-----e--EEEEEeeeccCCC---cccEEEEEeeeccccEEeEEEeecCCCcE-EEEEeCCCcEEEEEec
Q 026295           79 DG-----S--LLLWEEIVEDAQP---LQWKLCKSFESTSTQVLDVQFGVSSTSLK-LVAAYSDGHVKVYELL  139 (240)
Q Consensus        79 d~-----~--v~iwd~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~  139 (240)
                      .+     .  |.+.+... ++..   ..+..+..+    .....++++|  ++.. +++-..++.|..+|+.
T Consensus       213 ~~~~~~~~~~V~~i~r~~-~G~~~~~~~~~~v~~~----~~p~giavdp--~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          213 YDGKGDESPSVYIIKRNA-DGTFDDRSDIQLIAAY----KQCNGATIHP--INGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             CCTTGGGEEEEEEEECCT-TSCCSTTSCEEEEEEE----SCCCCEEECT--TTCCEEEEETTTTEEEEECHH
T ss_pred             CCCCcccCceEEEEecCC-CCceeecccceeeccC----CCceEEEEcC--CCCeEEEEECCCCEEEEEecc
Confidence            43     2  44444221 1110   001223222    2345778877  5444 4555577889999986

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.79  E-value=0.46  Score=36.59  Aligned_cols=88  Identities=11%  Similarity=-0.026  Sum_probs=42.3

Q ss_pred             CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec------CCeEEEEEeeeccCCCcccEEEEEee
Q 026295           31 GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS------DGSLLLWEEIVEDAQPLQWKLCKSFE  104 (240)
Q Consensus        31 ~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~~~~~~~~  104 (240)
                      ..+.+||....   +|+.+..+..-...-.++... +  +.+++.|+.      ...+.+||+...   ...|..+..+.
T Consensus       168 ~~v~~yd~~~~---~W~~~~~~p~~~~~~~~~~~~-~--~~iyv~GG~~~~~~~~~~v~~~d~d~~---~~~W~~~~~~~  238 (357)
T 2uvk_A          168 KFLLSFDPSTQ---QWSYAGESPWYGTAGAAVVNK-G--DKTWLINGEAKPGLRTDAVFELDFTGN---NLKWNKLAPVS  238 (357)
T ss_dssp             CEEEEEETTTT---EEEEEEECSSCCCBSCEEEEE-T--TEEEEECCEEETTEECCCEEEEECC------CEEEECCCSS
T ss_pred             ccEEEEeCCCC---cEEECCCCCCCCcccccEEEE-C--CEEEEEeeecCCCcccCceEEEEecCC---CCcEEecCCCC
Confidence            46888998754   777765544211111233332 3  566666653      234666765211   14566655543


Q ss_pred             eccccEEeEEEeecCCCcEEEEEeC
Q 026295          105 STSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus       105 ~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      .........+...  ++.+++.|+.
T Consensus       239 ~~~~~~~~~~~~~--~~~iyv~GG~  261 (357)
T 2uvk_A          239 SPDGVAGGFAGIS--NDSLIFAGGA  261 (357)
T ss_dssp             TTTCCBSCEEEEE--TTEEEEECCE
T ss_pred             CCcccccceEEEE--CCEEEEEcCc
Confidence            2222212112223  6677777763

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.73  E-value=0.26  Score=37.35  Aligned_cols=112  Identities=9%  Similarity=0.138  Sum_probs=59.8

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC------CeEEEEE
Q 026295           20 CGQRLATGSTD-------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD------GSLLLWE   86 (240)
Q Consensus        20 ~~~~l~~~~~d-------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------~~v~iwd   86 (240)
                      +++.++.|+.+       ..+.+||....   +|+.+..+......- ++.. .+  +.+++.|+.+      ..+.+||
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~-~~~~-~~--~~iyv~GG~~~~~~~~~~~~~yd  181 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAA---KWSEVKNLPIKVYGH-NVIS-HN--GMIYCLGGKTDDKKCTNRVFIYN  181 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTT---EEEEECCCSSCEESC-EEEE-ET--TEEEEECCEESSSCBCCCEEEEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCC---CEeECCCCCCccccc-EEEE-EC--CEEEEEcCCCCCCCccceEEEEc
Confidence            56667777653       24777887644   676654433211111 2222 23  5666666542      3577888


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-----CcEEEEEecCcccccceeEEe
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-----GHVKVYELLDPLILKNWQLQA  151 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-----g~v~iw~~~~~~~~~~~~~~~  151 (240)
                      +.+     ..|..+..+.........+.+    ++.+++.|+.+     ..+.+||+.+    .+|..+.
T Consensus       182 ~~~-----~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~  238 (318)
T 2woz_A          182 PKK-----GDWKDLAPMKTPRSMFGVAIH----KGKIVIAGGVTEDGLSASVEAFDLKT----NKWEVMT  238 (318)
T ss_dssp             TTT-----TEEEEECCCSSCCBSCEEEEE----TTEEEEEEEEETTEEEEEEEEEETTT----CCEEECC
T ss_pred             CCC-----CEEEECCCCCCCcccceEEEE----CCEEEEEcCcCCCCccceEEEEECCC----CeEEECC
Confidence            765     357766554433333233333    66777777643     2466777765    3365543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.63  E-value=0.24  Score=38.07  Aligned_cols=117  Identities=11%  Similarity=0.086  Sum_probs=73.1

Q ss_pred             eEEEEE---CCCCCEEEEEe-------------CCCcEEEEeCCCCCCCcEEEEeEeeec-----------CccEEEEEE
Q 026295           12 TTSSSW---NYCGQRLATGS-------------TDGTLSIFDSPDPSSSSFTCNLKTKVH-----------AGAILKVVW   64 (240)
Q Consensus        12 v~~~~~---s~~~~~l~~~~-------------~d~~i~iw~~~~~~~~~~~~~~~~~~h-----------~~~v~~~~~   64 (240)
                      +..+.|   +|+++++++..             .+..|..||+.....+.......+...           -....+++.
T Consensus        65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvav  144 (334)
T 2p9w_A           65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQ  144 (334)
T ss_dssp             EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEE
T ss_pred             eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEE
Confidence            578999   68887777644             257788999871110011111122111           124789999


Q ss_pred             cCCCCCCEEEEEecC-CeEEEEEeeeccCCCcccEEEEEe------eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEE
Q 026295           65 VPPEFGDAVACICSD-GSLLLWEEIVEDAQPLQWKLCKSF------ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYE  137 (240)
Q Consensus        65 ~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~  137 (240)
                      .++  |+..++.+.- +.|...+...        +.+..+      .......+.|+++|  ++..|++....|.+.-+|
T Consensus       145 D~~--GnaYVt~s~~~~~I~rV~pdG--------~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD  212 (334)
T 2p9w_A          145 DRD--GNSYVAFALGMPAIARVSADG--------KTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFD  212 (334)
T ss_dssp             CTT--SCEEEEEEESSCEEEEECTTS--------CCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEE
T ss_pred             CCC--CCEEEeCCCCCCeEEEEeCCC--------CEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEc
Confidence            888  9988887777 6655555432        111111      11223466899999  998888887799999999


Q ss_pred             ecC
Q 026295          138 LLD  140 (240)
Q Consensus       138 ~~~  140 (240)
                      +..
T Consensus       213 ~~~  215 (334)
T 2p9w_A          213 VSK  215 (334)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.63  E-value=0.57  Score=36.43  Aligned_cols=165  Identities=8%  Similarity=-0.018  Sum_probs=89.1

Q ss_pred             ceEEEEECCCCCEEEEEe------------CCCcEEEEeCCCCCCCcEEEEeEeee-----cCccEEEEEEcCCCCCC--
Q 026295           11 GTTSSSWNYCGQRLATGS------------TDGTLSIFDSPDPSSSSFTCNLKTKV-----HAGAILKVVWVPPEFGD--   71 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~------------~d~~i~iw~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~--   71 (240)
                      ....+...|+|..+++++            .+|.|.++|..+... +.+.+ .+.+     ..-....+.+.++..+.  
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-AVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-CEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-ceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            445677888886555542            689999999874321 22222 2222     22356677765521243  


Q ss_pred             EEEEEec--CCeEEEEEeeeccCCCcccEEEEEeeec-cccEEeEEEeecCCCcEEEEEe---CC------------CcE
Q 026295           72 AVACICS--DGSLLLWEEIVEDAQPLQWKLCKSFEST-STQVLDVQFGVSSTSLKLVAAY---SD------------GHV  133 (240)
Q Consensus        72 ~l~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~---~d------------g~v  133 (240)
                      ++++-..  +.+|.+|++.....   ....+..+.+. -...+.+.+.+  +|.+.++..   .|            ..-
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~---~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEK---SLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTT---EEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCE
T ss_pred             EEEEECCCCCCeEEEEEEECCCC---EEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCcc
Confidence            3444333  45788988865321   22344445432 24567899988  888666543   11            122


Q ss_pred             EEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          134 KVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       134 ~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .+|.+...    +....  ..           .....|.++|+|++.     .|.++....    +.|..|++..
T Consensus       204 ~vyr~d~~----~~~~~--~~-----------~l~~pNGia~spDg~-----~lYvadt~~----~~I~~~~~~~  252 (355)
T 3sre_A          204 FVTYYSPN----DVRVV--AE-----------GFDFANGINISPDGK-----YVYIAELLA----HKIHVYEKHA  252 (355)
T ss_dssp             EEEEECTT----CCEEE--EE-----------EESSEEEEEECTTSS-----EEEEEEGGG----TEEEEEEECT
T ss_pred             EEEEEECC----eEEEe--ec-----------CCcccCcceECCCCC-----EEEEEeCCC----CeEEEEEECC
Confidence            33333220    01111  00           111235899999986     565555432    8999999874

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.62  E-value=0.31  Score=37.83  Aligned_cols=113  Identities=8%  Similarity=-0.045  Sum_probs=56.7

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe----eecCccEEEEEEcCC--CCCCEEEEEec------
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT----KVHAGAILKVVWVPP--EFGDAVACICS------   78 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~--~~~~~l~s~~~------   78 (240)
                      .-..|+|.|+|++|..+...|.|++++....   ..+.+..+    ....+....|+++|+  ..+.+.++-..      
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~---~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKG---LSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTE---ECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCc---eeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4578999999983445566799999885421   00111111    112345789999883  11554444332      


Q ss_pred             -CCeEEEEEeeeccCCCcccEEEE-Eeee---ccccEEeEEEeecCCCcEEEEEe
Q 026295           79 -DGSLLLWEEIVEDAQPLQWKLCK-SFES---TSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        79 -d~~v~iwd~~~~~~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                       ...|..+++..........+.+. .+..   ....-..+.|.|  +|.++++.+
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G  148 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALG  148 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEEC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC--CCcEEEEEC
Confidence             12455555532211000111111 1111   112246799999  887555543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.43  E-value=0.41  Score=40.11  Aligned_cols=29  Identities=17%  Similarity=0.066  Sum_probs=21.8

Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      .+..++.++.||.++.||.++      ++.+-+++
T Consensus       483 agg~vf~gt~dg~l~A~D~~t------G~~lW~~~  511 (599)
T 1w6s_A          483 AGDLVFYGTLDGYLKARDSDT------GDLLWKFK  511 (599)
T ss_dssp             TTTEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCC------CCEEEEee
Confidence            455677799999999999998      45555443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.38  E-value=0.65  Score=35.44  Aligned_cols=113  Identities=8%  Similarity=-0.130  Sum_probs=64.6

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--CCeEEEEEe
Q 026295           11 GTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--DGSLLLWEE   87 (240)
Q Consensus        11 ~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~iwd~   87 (240)
                      ....+++++.+. +..+-...+.|.++++....   .+.+  +.........+++.|.  +..++.+..  .+.|...++
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~---~~~l--~~~~~~~P~giavdp~--~g~ly~td~~~~~~I~r~~~  152 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL---RKVL--FWQELDQPRAIALDPS--SGFMYWTDWGEVPKIERAGM  152 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE--ECSSCSSEEEEEEEGG--GTEEEEEECSSSCEEEEEET
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc---EEEE--EeCCCCCccEEEEeCC--CCEEEEEecCCCCEEEEEEc
Confidence            345688887554 44444556789999887431   1211  1122345678999886  555555442  456666665


Q ss_pred             eeccCCCcccEEEEEe-eeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~  140 (240)
                      ...        ....+ ...-.....++++|  ++..|..+ +..+.|..+++..
T Consensus       153 dG~--------~~~~~~~~~l~~Pnglavd~--~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          153 DGS--------SRFIIINSEIYWPNGLTLDY--EEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             TSC--------SCEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CCC--------CeEEEEECCCCCccEEEEec--cCCEEEEEECCCCEEEEEcCCC
Confidence            432        11111 12224557899987  55545444 4567788888753

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=95.33  E-value=1.3  Score=38.52  Aligned_cols=114  Identities=9%  Similarity=-0.054  Sum_probs=67.1

Q ss_pred             ceEEEEECCCCCEEE-EEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--CCeEEEEEe
Q 026295           11 GTTSSSWNYCGQRLA-TGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--DGSLLLWEE   87 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~iwd~   87 (240)
                      ....|++++.++.|. +-...+.|.+.++...   ..+.+  +.........|++.|.  ...|+....  .+.|...++
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~---~~~~l--~~~~l~~P~gIaVDp~--~g~LYwtD~g~~~~I~~~~~  544 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKTL--FRENGSKPRAIVVDPV--HGFMYWTDWGTPAKIKKGGL  544 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSS---SEEEE--EECTTCCEEEEEEETT--TTEEEEEECSSSCEEEEEET
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCC---eEEEE--EeCCCCCcceEEEecC--CCCEEEecCCCCCeEEEEec
Confidence            456789988775444 4455688999998743   11111  2223345789999887  555555442  256777766


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~  140 (240)
                      ...       .....+...-.....|++++  ....|..+ ...+.|..+++..
T Consensus       545 dG~-------~~~~lv~~~l~~P~GLavD~--~~~~LYwaD~~~~~I~~~d~dG  589 (791)
T 3m0c_C          545 NGV-------DIYSLVTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNG  589 (791)
T ss_dssp             TSC-------CEEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CCC-------ceEEEEeCCCCCceEEEEec--CCCeEEEEeCCCCcEEEEecCC
Confidence            532       22222222335678899987  44444444 4556788887753

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.30  E-value=1.3  Score=38.36  Aligned_cols=112  Identities=11%  Similarity=0.054  Sum_probs=68.8

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~   87 (240)
                      ..|.++..+++|++|-.|..++-|.+|+....   ..+......  .....|.++...++  |.+.+.. .+ -+.+|+.
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~---~~~~~~~~~~~l~~~~v~~i~~d~~--g~lwigt-~~-Gl~~~~~  478 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG---QVENFNQRNSQLVNENVYAILPDGE--GNLWLGT-LS-ALVRFNP  478 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTC---CEEEECTTTSCCSCSCEEEEEECSS--SCEEEEE-SS-CEEEEET
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC---cEEEeecCCCCcCCCeeEEEEECCC--CCEEEEe-cC-ceeEEeC
Confidence            56889998888885666777667889988632   222211000  12456889988776  7755544 44 4777886


Q ss_pred             eeccCCCcccEEEEEeee-------ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSFES-------TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ..+       +. ..+..       ....|.++...+  +|. +..++. +-|..|+..+
T Consensus       479 ~~~-------~~-~~~~~~~~~~~~~~~~i~~i~~d~--~g~-lWigt~-~Gl~~~~~~~  526 (795)
T 4a2l_A          479 EQR-------SF-TTIEKEKDGTPVVSKQITTLFRDS--HKR-LWIGGE-EGLSVFKQEG  526 (795)
T ss_dssp             TTT-------EE-EECCBCTTCCBCCCCCEEEEEECT--TCC-EEEEES-SCEEEEEEET
T ss_pred             CCC-------eE-EEccccccccccCCceEEEEEECC--CCC-EEEEeC-CceEEEeCCC
Confidence            543       22 22211       235688888866  777 445555 4588888765

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=94.76  E-value=1.2  Score=35.18  Aligned_cols=114  Identities=9%  Similarity=-0.074  Sum_probs=66.5

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--CCeEEEEEe
Q 026295           11 GTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--DGSLLLWEE   87 (240)
Q Consensus        11 ~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~iwd~   87 (240)
                      ....+++++.+. +..+-...+.|.+.++...   ...  ..+...-.....|++.|.  +..|+....  .+.|...++
T Consensus       160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---~~~--~l~~~~~~~P~~iavdp~--~g~ly~td~~~~~~I~~~~~  232 (400)
T 3p5b_L          160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRK--TLFRENGSKPRAIVVDPV--HGFMYWTDWGTPAKIKKGGL  232 (400)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEECTTTC---SEE--EEEECSSCCEEEEEEETT--TTEEEEEECSSSCCEEEEET
T ss_pred             CcccEEEEecCCceEEEECCCCeEEEEeCCCC---ceE--EEEeCCCCCcceEEEecc--cCeEEEEeCCCCCEEEEEeC
Confidence            456889988544 4445455678888888743   111  122222345788999886  555554432  356777766


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEecC
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELLD  140 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~~  140 (240)
                      ...       .........-.....|+++|  .+..|..+ ...+.|..+|+..
T Consensus       233 dG~-------~~~~~~~~~l~~P~glavd~--~~~~lY~aD~~~~~I~~~d~dG  277 (400)
T 3p5b_L          233 NGV-------DIYSLVTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNG  277 (400)
T ss_dssp             TSC-------SCEEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             CCC-------ccEEEEECCCCceEEEEEEe--CCCEEEEEECCCCEEEEEeCCC
Confidence            532       11111222235668899987  55555444 4567788888753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=94.70  E-value=1.1  Score=34.67  Aligned_cols=149  Identities=10%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             EEECC---CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC--CCC---EEEEEec---CCeEE
Q 026295           15 SSWNY---CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE--FGD---AVACICS---DGSLL   83 (240)
Q Consensus        15 ~~~s~---~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~---~l~s~~~---d~~v~   83 (240)
                      +-.+|   ...+++.....+-+.+||+..      +.+..+..  +.++.+..-|..  .|.   ++++...   +.+|+
T Consensus        31 vw~~~~dp~~s~ii~t~k~~gL~Vydl~G------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~  102 (355)
T 3amr_A           31 IWLDPKTPQNSKLITTNKKSGLVVYSLDG------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE  102 (355)
T ss_dssp             EECCSSCGGGCEEEEEETTTEEEEEETTS------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred             EecCCCCCCccEEEEEcCCCCEEEEcCCC------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence            44445   345677777778999999963      34555543  566666665530  022   3334443   47899


Q ss_pred             EEEeeeccCCCcccEEEEEee-------eccccEEeEEE--eecCCCcEEEEEeCCCcEEEEEecCcccc-cceeEEeee
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE-------STSTQVLDVQF--GVSSTSLKLVAAYSDGHVKVYELLDPLIL-KNWQLQAEF  153 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~--~~~~~~~~l~~~~~dg~v~iw~~~~~~~~-~~~~~~~~~  153 (240)
                      +|++....      ..+..+.       .....+..+++  +|.....++++...+|.+..|++...... ...+++.+|
T Consensus       103 vf~iDp~~------~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f  176 (355)
T 3amr_A          103 IYAIDGKN------GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF  176 (355)
T ss_dssp             EEEECTTT------CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEEECCCC------CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence            99884221      1233331       11155667787  44212236888889999999998642111 234666666


Q ss_pred             ecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          154 QNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       154 ~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                      .... .+.          .+...+...     .|.++-.+
T Consensus       177 ~lgs-q~E----------gcvvDd~~g-----~Lyv~eEd  200 (355)
T 3amr_A          177 KMNS-QTE----------GMAADDEYG-----RLYIAEED  200 (355)
T ss_dssp             ECSS-CEE----------EEEEETTTT-----EEEEEETT
T ss_pred             cCCC-Ccc----------eEEEcCCCC-----eEEEeccc
Confidence            5432 122          566777766     78888887

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.65  E-value=0.84  Score=38.99  Aligned_cols=109  Identities=14%  Similarity=0.116  Sum_probs=63.4

Q ss_pred             CCCEEEEEeCCC------cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC--eEEEEEeeecc
Q 026295           20 CGQRLATGSTDG------TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG--SLLLWEEIVED   91 (240)
Q Consensus        20 ~~~~l~~~~~d~------~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~   91 (240)
                      +++.++.|+.++      .+.+||....   +|..+..+..-... .+.....+  +.+++.|+.++  .+.+||...  
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~---~W~~~~~~p~~R~~-h~~~~~~~--~~iyv~GG~~~~~~v~~yd~~t--  522 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTR---EWSMIKSLSHTRFR-HSACSLPD--GNVLILGGVTEGPAMLLYNVTE--  522 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTT---EEEECCCCSBCCBS-CEEEECTT--SCEEEECCBCSSCSEEEEETTT--
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCC---cEEECCCCCCCccc-ceEEEEcC--CEEEEECCCCCCCCEEEEECCC--
Confidence            677777777543      4778888744   67766544321111 22333235  78888887655  578888765  


Q ss_pred             CCCcccEEEEE---eeeccccEEeEEEeecCC-CcEEEEEeC--C-----CcEEEEEecCc
Q 026295           92 AQPLQWKLCKS---FESTSTQVLDVQFGVSST-SLKLVAAYS--D-----GHVKVYELLDP  141 (240)
Q Consensus        92 ~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~l~~~~~--d-----g~v~iw~~~~~  141 (240)
                         ..|..+..   ..........+.+..  + +.+++.|+.  +     ..+.+||+.+.
T Consensus       523 ---~~W~~~~~~g~~p~~r~~~~a~v~~~--~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~  578 (695)
T 2zwa_A          523 ---EIFKDVTPKDEFFQNSLVSAGLEFDP--VSKQGIILGGGFMDQTTVSDKAIIFKYDAE  578 (695)
T ss_dssp             ---TEEEECCCSSGGGGSCCBSCEEEEET--TTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred             ---CceEEccCCCCCCCcccceeEEEEeC--CCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence               35666554   222222223355543  3 667777765  2     35888998763

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.48  E-value=1.3  Score=34.31  Aligned_cols=72  Identities=11%  Similarity=0.131  Sum_probs=43.3

Q ss_pred             ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCC---CcEEEEE-eC
Q 026295           57 GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSST---SLKLVAA-YS  129 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~---~~~l~~~-~~  129 (240)
                      .....++|.|+  |.++++ ..++.|.+++  .+.     ...+..+.   ........|+|+|  +   +..|.++ ..
T Consensus        31 ~~P~~ia~~pd--G~l~V~-e~~g~I~~i~--~g~-----~~~~~~~~v~~~g~~~p~gia~~p--df~~~g~lYv~~~~   98 (352)
T 2ism_A           31 EVPWALAFLPD--GGMLIA-ERPGRIRLFR--EGR-----LSTYAELSVYHRGESGLLGLALHP--RFPQEPYVYAYRTV   98 (352)
T ss_dssp             SCEEEEEECTT--SCEEEE-ETTTEEEEEE--TTE-----EEEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEEE
T ss_pred             CCceEEEEcCC--CeEEEE-eCCCeEEEEE--CCC-----ccEeecceEeecCCCCceeEEECC--CCCCCCEEEEEEec
Confidence            34678999999  886555 5668888887  221     12232222   2235678999988  6   3334333 32


Q ss_pred             C-----CcEEEEEecC
Q 026295          130 D-----GHVKVYELLD  140 (240)
Q Consensus       130 d-----g~v~iw~~~~  140 (240)
                      +     +.|..++...
T Consensus        99 ~~~~~~~~v~r~~~~~  114 (352)
T 2ism_A           99 AEGGLRNQVVRLRHLG  114 (352)
T ss_dssp             CTTSSEEEEEEEEECS
T ss_pred             CCCCCccEEEEEEeCC
Confidence            2     5677777653

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.41  E-value=1.3  Score=34.05  Aligned_cols=97  Identities=6%  Similarity=-0.059  Sum_probs=52.0

Q ss_pred             CCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEec-C---------CeEEEEEe
Q 026295           20 CGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICS-D---------GSLLLWEE   87 (240)
Q Consensus        20 ~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~-d---------~~v~iwd~   87 (240)
                      +++.++.|+.+ ..+.+||+... ..+|..+..+. ........+.+  +  +.+++.|+. +         ..+.+||.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~-~~~W~~~~~~p~~~R~~~~~~~~--~--~~lyv~GG~~~~~~~~~~~~~~v~~yd~   93 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAK-DKKWTALAAFPGGPRDQATSAFI--D--GNLYVFGGIGKNSEGLTQVFNDVHKYNP   93 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSS-SCCEEECCCCTTCCCBSCEEEEE--T--TEEEEECCEEECTTSCEEECCCEEEEET
T ss_pred             CCEEEEEeCcCCCeEEEEccccC-CCCeeECCCCCCCcCccceEEEE--C--CEEEEEcCCCCCCCccceeeccEEEEeC
Confidence            56666776644 46888888531 01677665544 11111222222  3  566666665 2         35677777


Q ss_pred             eeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCC
Q 026295           88 IVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      ..     ..|..+..+. ........+.  .  ++.+++.|+.+
T Consensus        94 ~~-----~~W~~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~  128 (357)
T 2uvk_A           94 KT-----NSWVKLMSHAPMGMAGHVTFV--H--NGKAYVTGGVN  128 (357)
T ss_dssp             TT-----TEEEECSCCCSSCCSSEEEEE--E--TTEEEEEECCC
T ss_pred             CC-----CcEEECCCCCCcccccceEEE--E--CCEEEEEeCcC
Confidence            54     4566665554 2222222233  3  77878888754

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=94.31  E-value=0.12  Score=44.21  Aligned_cols=112  Identities=9%  Similarity=-0.105  Sum_probs=60.8

Q ss_pred             eEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--CCeEEEEEee
Q 026295           12 TTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--DGSLLLWEEI   88 (240)
Q Consensus        12 v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~~v~iwd~~   88 (240)
                      ...|++++.+ +++++-...+.|.++++...   ..+.  .+.........|++.|.  +..|+.+..  .+.|...++.
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~---~~~~--l~~~~~~~P~giavDp~--~g~ly~td~~~~~~I~~~~~d  527 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---KRKT--LFREQGSKPRAIVVDPV--HGFMYWTDWGTPAKIKKGGLN  527 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSC---CEEE--ECCCSSCCCCCEECCSS--SSCCEECCCSSSCCEEBCCSS
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCC---ceEE--EEeCCCCCcceEEEccC--CCcEEEcccCCCCeEEEEeCC
Confidence            4567888654 44444455678999988642   1111  12222234567888876  444443332  2567666654


Q ss_pred             eccCCCcccEEEEEe-eeccccEEeEEEeecCCCc-EEEEEeCCCcEEEEEecC
Q 026295           89 VEDAQPLQWKLCKSF-ESTSTQVLDVQFGVSSTSL-KLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iw~~~~  140 (240)
                      ..        ....+ ...-.....|+|+|  ++. ++++-...+.|..+++..
T Consensus       528 G~--------~~~~l~~~~l~~PnGlavd~--~~~~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          528 GV--------DIYSLVTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SC--------CCCEESCSSCSSCCCEEECT--TTCCEEEEETTTTEEEEECSSS
T ss_pred             CC--------CeeEEEeCCCCCccEEEEec--cCCEEEEEecCCCeEEEEccCC
Confidence            32        11111 11223456899987  544 444445667888888753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=94.24  E-value=1.9  Score=35.23  Aligned_cols=146  Identities=10%  Similarity=0.157  Sum_probs=75.2

Q ss_pred             EEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee---ccccEEeEEE-------eecCCCcEEEEEe
Q 026295           59 ILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES---TSTQVLDVQF-------GVSSTSLKLVAAY  128 (240)
Q Consensus        59 v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~~~l~~~~  128 (240)
                      ...|+|.|...++++++-...+.|++.|+..+       ........   .......++|       ++  ++..|+++.
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~-------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~--~G~~lyvad  211 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR-------MLSSPLNINTIPTNRIRSIAFNKKIEGYAD--EAEYMIVAI  211 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTT-------EEEEEECCTTSSCSBEEEEEECCCBTTTBC--TTCEEEEEE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCC-------EEEEEEccCccccCCCcEEEEeecccccCC--CCCEEEEEe
Confidence            45788887211444444443456777777653       22222222   1235788999       99  888666665


Q ss_pred             CCC-c------EEEEEecCcccccc---eeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCC
Q 026295          129 SDG-H------VKVYELLDPLILKN---WQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQL  198 (240)
Q Consensus       129 ~dg-~------v~iw~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~  198 (240)
                      ..+ .      |.+++.........   +..+..+.              ..+.++.+|....    ++++-...     
T Consensus       212 ~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~--------------~p~giavdp~~g~----LYvtd~~~-----  268 (496)
T 3kya_A          212 DYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYK--------------QCNGATIHPINGE----LYFNSYEK-----  268 (496)
T ss_dssp             CCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEES--------------CCCCEEECTTTCC----EEEEETTT-----
T ss_pred             CCCCCcccCceEEEEecCCCCceeecccceeeccCC--------------CceEEEEcCCCCe----EEEEECCC-----
Confidence            543 2      55554322111110   01111111              1127788996541    45555555     


Q ss_pred             CeEEEEEee-------cCCCCcce--------eEe-eecCCCCCCceEEEEEecCCC
Q 026295          199 NSSKVWEFD-------EAHNRWLP--------VAE-LALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       199 ~~i~iw~~~-------~~~~~~~~--------~~~-~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +.|..+|+.       ++.. |..        ... +..  +-...-+.|+|+|++.
T Consensus       269 g~V~r~d~~~~~~~~~tg~~-~tp~~~~~~g~~~~l~~~--~~~~~p~~ia~~p~G~  322 (496)
T 3kya_A          269 GQVFRLDLVDYFKTIKNGGS-WDPIVKNNPNTFKQLFTI--ADPSWEFQIFIHPTGK  322 (496)
T ss_dssp             TEEEEECHHHHHHHHHTTCC-CCCBGGGCTTTEEEEEEC--SSSSCCEEEEECTTSS
T ss_pred             CEEEEEecccccccccCcee-ecccccccccccceeEec--CCCCCceEEEEcCCCC
Confidence            889999987       3332 110        111 111  1223568999999985

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.23  E-value=2.4  Score=36.54  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=67.1

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe---eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT---KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      ..|.++..+++|.+. .|+.++-|..|+..     +.......   ......|.++...++  +.+. .|+.++-+..++
T Consensus       363 ~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~-----~~~~~~~~~~~~~~~~~v~~i~~d~~--g~lW-igt~~~Gl~~~~  433 (781)
T 3v9f_A          363 KVVSSVCDDGQGKLW-IGTDGGGINVFENG-----KRVAIYNKENRELLSNSVLCSLKDSE--GNLW-FGTYLGNISYYN  433 (781)
T ss_dssp             SCEEEEEECTTSCEE-EEEBSSCEEEEETT-----EEEEECC-----CCCSBEEEEEECTT--SCEE-EEETTEEEEEEC
T ss_pred             cceEEEEEcCCCCEE-EEeCCCcEEEEECC-----CCeEEEccCCCCCCCcceEEEEECCC--CCEE-EEeccCCEEEEc
Confidence            468899988888755 45545557888876     32221111   112356888888766  6654 456656688888


Q ss_pred             eeeccCCCcccEEEEEee---eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           87 EIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ...+       + ...+.   .....|.++...+  ++. |..++.. -|..|+..+
T Consensus       434 ~~~~-------~-~~~~~~~~~~~~~v~~i~~d~--~g~-lwigt~~-Gl~~~~~~~  478 (781)
T 3v9f_A          434 TRLK-------K-FQIIELEKNELLDVRVFYEDK--NKK-IWIGTHA-GVFVIDLAS  478 (781)
T ss_dssp             SSSC-------E-EEECCSTTTCCCCEEEEEECT--TSE-EEEEETT-EEEEEESSS
T ss_pred             CCCC-------c-EEEeccCCCCCCeEEEEEECC--CCC-EEEEECC-ceEEEeCCC
Confidence            7543       2 22222   1335688887765  676 5556664 588888765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.03  E-value=1.8  Score=37.02  Aligned_cols=163  Identities=8%  Similarity=0.110  Sum_probs=85.1

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCCCCcEEEEe-E-----eeecCccEEEEEEcC-CCCCCEEEEEecCC------e
Q 026295           19 YCGQRLATGSTD----GTLSIFDSPDPSSSSFTCNL-K-----TKVHAGAILKVVWVP-PEFGDAVACICSDG------S   81 (240)
Q Consensus        19 ~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~-~-----~~~h~~~v~~~~~~~-~~~~~~l~s~~~d~------~   81 (240)
                      .++..++.|+.+    ..+.+||....   +|..+. .     +...... .++...+ +  +.+++.|+.++      .
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~---~W~~~~~~~p~~~~p~~R~~-hs~~~~~~~--~~lyv~GG~~~~~~~~~d  469 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYD---KIDMKNIEVSSSEVPVARMC-HTFTTISRN--NQLLLIGGRKAPHQGLSD  469 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSS---CEEEEECCCCCSCCCCCCBS-CEEEEETTT--TEEEEECCBSSTTCBCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCC---eEEEeccCCCCCCCCccccc-eEEEEEccC--CEEEEEcCCCCCCCcccc
Confidence            456677777753    45778888744   676655 3     1111111 2333333 5  67777776543      4


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCC--cEEEEEecCcccccceeEEeeeecccce
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDG--HVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg--~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +.+||...     ..|..+..+......-..+.+ .  ++.+++.|+.++  .+.+||+.+    ..|..+........ 
T Consensus       470 v~~yd~~t-----~~W~~~~~~p~~R~~h~~~~~-~--~~~iyv~GG~~~~~~v~~yd~~t----~~W~~~~~~g~~p~-  536 (695)
T 2zwa_A          470 NWIFDMKT-----REWSMIKSLSHTRFRHSACSL-P--DGNVLILGGVTEGPAMLLYNVTE----EIFKDVTPKDEFFQ-  536 (695)
T ss_dssp             CEEEETTT-----TEEEECCCCSBCCBSCEEEEC-T--TSCEEEECCBCSSCSEEEEETTT----TEEEECCCSSGGGG-
T ss_pred             EEEEeCCC-----CcEEECCCCCCCcccceEEEE-c--CCEEEEECCCCCCCCEEEEECCC----CceEEccCCCCCCC-
Confidence            66777654     357766555433333222222 3  677777877654  688898876    33554432110100 


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCC--CCCCeEEEEEeecCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDT--PQLNSSKVWEFDEAH  210 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~--~~~~~i~iw~~~~~~  210 (240)
                          .....  .++.+.....    .+++.|+.++.  ...+.+.+||+.+..
T Consensus       537 ----~r~~~--~a~v~~~~~~----~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          537 ----NSLVS--AGLEFDPVSK----QGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ----SCCBS--CEEEEETTTT----EEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ----cccce--eEEEEeCCCC----EEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence                00111  1355555421    26777776311  122568888887654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.95  E-value=1.7  Score=33.69  Aligned_cols=110  Identities=11%  Similarity=-0.009  Sum_probs=58.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee---ecCccEEEEEEcCC--CCCCEEEEEec---C---
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK---VHAGAILKVVWVPP--EFGDAVACICS---D---   79 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~--~~~~~l~s~~~---d---   79 (240)
                      .-..++|.|+|+++++ ..++.|++++...    . +.+..+.   .-......|+++|+  ..+.+.++-..   +   
T Consensus        30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G----~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~  103 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVT-ERPGRLVLISPSG----K-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI  103 (354)
T ss_dssp             CEEEEEEEETTEEEEE-ETTTEEEEECSSC----E-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred             CCeEEEEcCCCeEEEE-eCCCEEEEEeCCC----c-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence            4678999999975554 5669999887331    2 2333221   12346889999884  11444444332   2   


Q ss_pred             -CeEEEEEeeeccCCCcccEEE-EEeee-ccccEEeEEEeecCCCcEEEEEe
Q 026295           80 -GSLLLWEEIVEDAQPLQWKLC-KSFES-TSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        80 -~~v~iwd~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                       ..|..++...........+.+ ..+.. .......+.|.|  +|.++++.+
T Consensus       104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G  153 (354)
T 3a9g_A          104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTG  153 (354)
T ss_dssp             EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECC
T ss_pred             ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEEC
Confidence             456666654321100011222 22221 112346789988  887555543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=93.89  E-value=2.6  Score=35.52  Aligned_cols=160  Identities=4%  Similarity=-0.139  Sum_probs=84.5

Q ss_pred             cceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeEEEEEe
Q 026295           10 KGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSLLLWEE   87 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v~iwd~   87 (240)
                      .....++|++.+..|.-+. ..+.|..+++....    .....+..--.....|++.+.  +. ++++-...+.|.+.++
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~----~~~~v~~~~~~~P~GlAvD~~--~~~ly~~d~~~~~I~v~~~  113 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE----SVQNVVVSGLLSPDGLACDWL--GEKLYWTDSETNRIEVSNL  113 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCEEEEEEETT--TTEEEEEETTTTEEEEEET
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC----ceEEEEeCCCCCcCeEEEEec--CCEEEEEeCCCCEEEEEEC
Confidence            3467889998776666554 35678888876321    011122222245778998875  44 4444455678988887


Q ss_pred             eeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC--CCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           88 IVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS--DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      ...       .....+...-.....|+++|  .+.+|.....  .+.|...++..       .....+....        
T Consensus       114 dG~-------~~~~l~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG-------~~~~~l~~~~--------  169 (619)
T 3s94_A          114 DGS-------LRKVLFWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDG-------SSRFIIINSE--------  169 (619)
T ss_dssp             TSC-------SCEEEECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTS-------CSCEEEECSS--------
T ss_pred             CCC-------CEEEEEeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCC-------CceEEEEeCC--------
Confidence            643       11111212334567899988  5444444442  34555444432       1111111100        


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                       .-..+.+++++...     .|..+....    +.|..++++..
T Consensus       170 -~~~P~Glald~~~~-----~LY~aD~~~----~~I~~~~~dG~  203 (619)
T 3s94_A          170 -IYWPNGLTLDYEEQ-----KLYWADAKL----NFIHKSNLDGT  203 (619)
T ss_dssp             -CSSEEEEEEETTTT-----EEEEEETTT----CCEEEESSSCC
T ss_pred             -CCCCcEEEEEccCC-----EEEEEeCCC----CeEEEecCCCC
Confidence             01123788998765     455554432    77888877653

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=93.29  E-value=2.2  Score=32.95  Aligned_cols=107  Identities=10%  Similarity=0.074  Sum_probs=58.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee---ecCccEEEEEEcCC-C-CCCEEEEEecC-----C
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK---VHAGAILKVVWVPP-E-FGDAVACICSD-----G   80 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~-~-~~~~l~s~~~d-----~   80 (240)
                      .-..++|.|+|+++++ ..++.|++++ ..    ..+.+..+.   .-......|+|+|+ . .+.+.++-...     .
T Consensus        32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g----~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EG----RLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CEEEEEECTTSCEEEE-ETTTEEEEEE-TT----EEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CceEEEEcCCCeEEEE-eCCCeEEEEE-CC----CccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            4578999999985555 5669999998 32    333333222   12346789999885 0 13433333322     4


Q ss_pred             eEEEEEeeeccCCCcccEEE-EEee---eccccEEeEEEeecCCCcEEEEE
Q 026295           81 SLLLWEEIVEDAQPLQWKLC-KSFE---STSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~-~~~~---~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                      .|..++.....  ....+.+ ..+.   ........++|.|  +|.++++.
T Consensus       106 ~v~r~~~~~~~--~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~  152 (352)
T 2ism_A          106 QVVRLRHLGER--GVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTT  152 (352)
T ss_dssp             EEEEEEECSSC--EEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEEC
T ss_pred             EEEEEEeCCCC--cCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEE
Confidence            66666664210  0001222 2232   1112346899988  88755553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.27  E-value=2.3  Score=33.01  Aligned_cols=156  Identities=10%  Similarity=0.063  Sum_probs=86.2

Q ss_pred             CCcEEEEeCCCCCCCcEEEEeEe--e-ecC-ccEEEEEE--cCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEE
Q 026295           30 DGTLSIFDSPDPSSSSFTCNLKT--K-VHA-GAILKVVW--VPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKS  102 (240)
Q Consensus        30 d~~i~iw~~~~~~~~~~~~~~~~--~-~h~-~~v~~~~~--~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  102 (240)
                      +++|++|++..... +...+...  . ... ..++.+++  +|. .+. +++....+|.+..|++..........+.+++
T Consensus        98 ~n~l~vf~iDp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~-~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~  175 (355)
T 3amr_A           98 KNTIEIYAIDGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQK-TGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA  175 (355)
T ss_dssp             CCEEEEEEECTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred             CCeEEEEEECCCCC-ceeeccccccCcCCCCCCeeEEEEEecCC-CCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence            57899997742210 22322111  1 111 45667777  664 143 6777888999999999643221123367777


Q ss_pred             eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEe--CCCC
Q 026295          103 FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWN--PQKG  180 (240)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~--p~~~  180 (240)
                      |... ..+..+...+  ....|..+-.+.-|..++... ......+++..+...        .....+..++.-  +++.
T Consensus       176 f~lg-sq~EgcvvDd--~~g~Lyv~eEd~GIw~~da~p-~~~~~~~~v~~~~~g--------~l~aDvEGLai~~~~~g~  243 (355)
T 3amr_A          176 FKMN-SQTEGMAADD--EYGRLYIAEEDEAIWKFSAEP-DGGSNGTVIDRADGR--------HLTRDIEGLTIYYAADGK  243 (355)
T ss_dssp             EECS-SCEEEEEEET--TTTEEEEEETTTEEEEEECST-TSCSCCEEEEEBSSS--------SBCSCEEEEEEEECGGGC
T ss_pred             ecCC-CCcceEEEcC--CCCeEEEecccceEEEEeCCc-CCCCCceEEEEecCC--------ccccCcceEEEEecCCCC
Confidence            7754 5677888877  667788888885554444332 111123344333111        001112256653  3332


Q ss_pred             CCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          181 ENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       181 ~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                         + +|++++..+    +++.+||..
T Consensus       244 ---g-yLivSsQG~----~s~~Vydr~  262 (355)
T 3amr_A          244 ---G-YLMASSQGN----SSYAIYDRQ  262 (355)
T ss_dssp             ---E-EEEEEEGGG----TEEEEEESS
T ss_pred             ---E-EEEEEcCCC----CEEEEEECC
Confidence               1 566666443    899999986

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.06  E-value=2.4  Score=32.78  Aligned_cols=73  Identities=18%  Similarity=0.111  Sum_probs=42.9

Q ss_pred             CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee---eccccEEeEEEeecCC----CcEEEEEe
Q 026295           56 AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE---STSTQVLDVQFGVSST----SLKLVAAY  128 (240)
Q Consensus        56 ~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~----~~~l~~~~  128 (240)
                      -.....|+|.|+  |.++++ ..++.|++++.. +     . ..+..+.   ........|+++|  +    +.+.++-+
T Consensus        28 l~~P~~ia~~pd--G~l~V~-e~~g~I~~~d~~-G-----~-~~~~~~~v~~~g~~g~~gia~~p--df~~~g~lyv~~~   95 (354)
T 3a9g_A           28 LEVPWSIAPLGG--GRYLVT-ERPGRLVLISPS-G-----K-KLVASFDVANVGEAGLLGLALHP--EFPKKSWVYLYAS   95 (354)
T ss_dssp             CSCEEEEEEEET--TEEEEE-ETTTEEEEECSS-C-----E-EEEEECCCCCSTTCSEEEEEECT--TTTTSCEEEEEEE
T ss_pred             CCCCeEEEEcCC--CeEEEE-eCCCEEEEEeCC-C-----c-eEeeccceeecCCCceeeEEeCC--CCCcCCEEEEEEe
Confidence            345678999998  875554 566889888632 2     0 2232221   2235678899988  6    44333333


Q ss_pred             C---C----CcEEEEEecC
Q 026295          129 S---D----GHVKVYELLD  140 (240)
Q Consensus       129 ~---d----g~v~iw~~~~  140 (240)
                      .   +    +.|..|+...
T Consensus        96 ~~~~~~~~~~~v~r~~~~~  114 (354)
T 3a9g_A           96 YFAEGGHIRNRVIRGRLDG  114 (354)
T ss_dssp             EECGGGCEEEEEEEEEECS
T ss_pred             ccCCCCCcceEEEEEEECC
Confidence            2   2    4566676653

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.96  E-value=2.6  Score=32.77  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=54.6

Q ss_pred             EEEEEEcCCCCCCEEEEE------------ecCCeEEEEEeeeccCCCcccEEEEEeee-----ccccEEeEEEeecCCC
Q 026295           59 ILKVVWVPPEFGDAVACI------------CSDGSLLLWEEIVEDAQPLQWKLCKSFES-----TSTQVLDVQFGVSSTS  121 (240)
Q Consensus        59 v~~~~~~~~~~~~~l~s~------------~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~  121 (240)
                      .-++...|+  |..++++            ..+|.|.++|+......   .+.+ .+.+     ..-....+.+.+..++
T Consensus        52 ~EDi~~~~~--G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~---~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg  125 (355)
T 3sre_A           52 SEDLEILPN--GLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---VSEL-EIIGNTLDISSFNPHGISTFIDDDN  125 (355)
T ss_dssp             CCEEEECTT--SEEEEEECCC-----------CCEEEEEETTSSSCC---EEEC-EEECSSCCGGGCCEEEEEEEECTTC
T ss_pred             cceeEEcCC--CeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc---eEEE-EccCCCCCcCceeeeeeEEEECCCC
Confidence            346666676  7665555            26889999998643221   1111 1221     2235667777653234


Q ss_pred             c-EEEEEe-C--CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCC
Q 026295          122 L-KLVAAY-S--DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG  180 (240)
Q Consensus       122 ~-~l~~~~-~--dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~  180 (240)
                      . +|+++. .  +.+|.+|++.....  ....+..+...         .....|++...+++.
T Consensus       126 ~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~---------~~~~pND~~v~~~G~  177 (355)
T 3sre_A          126 TVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHK---------LLPSVNDIVAVGPEH  177 (355)
T ss_dssp             CEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCT---------TCSSEEEEEEEETTE
T ss_pred             cEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccC---------CCCCCceEEEeCCCC
Confidence            3 344443 2  46788888864321  12333333322         122346888888885

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=92.71  E-value=2.8  Score=32.49  Aligned_cols=114  Identities=12%  Similarity=0.013  Sum_probs=62.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe----eecCccEEEEEEcCC--CCCCEEEEEe--cCCe
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT----KVHAGAILKVVWVPP--EFGDAVACIC--SDGS   81 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~~~--~~~~~l~s~~--~d~~   81 (240)
                      ..-+.++|.|+|+++++-...|.|++++....   ....+..+    ..-.+....|+++|+  ..+.+.++-+  .+..
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g---~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~  108 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTG---RKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR  108 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCC---cEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence            35678999999998777665899998875422   22233222    123456889999884  1144444322  3344


Q ss_pred             EEEEEeeecc---CCCcccEEE-EEee-eccccEEeEEEeecCCCcEEEEEe
Q 026295           82 LLLWEEIVED---AQPLQWKLC-KSFE-STSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        82 v~iwd~~~~~---~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      |.-|.+...+   ......+.+ ..+. .....-..|.|.|  +|.++++.+
T Consensus       109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp--DG~Lyvt~G  158 (347)
T 3das_A          109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP--DKMLYAGTG  158 (347)
T ss_dssp             EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT--TSCEEEECB
T ss_pred             EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC--CCCEEEEEC
Confidence            5445444311   011112222 2232 1223446799998  887666544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=92.10  E-value=4.9  Score=33.91  Aligned_cols=159  Identities=3%  Similarity=-0.152  Sum_probs=85.9

Q ss_pred             ceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      ....++|++.+..|..+ ..++.|+.+++....   .+.+  +..-......|++.+. .+++..+-...+.|.+.++..
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---~~~v--~~~g~~~P~GlAvD~~-~~~LY~tD~~~~~I~v~~~dG  111 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSA---LEHV--VEFGLDYPEGMAVDWL-GKNLYWADTGTNRIEVSKLDG  111 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE--ECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---cEEE--EeCCCCCcceEEEEeC-CCEEEEEECCCCEEEEEecCC
Confidence            56789999976655544 456888888886431   1211  1111234567777655 134444444466888888754


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe--CCCcEEEEEecCcccccceeEEeeeecccceeecccccc
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKAS  167 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  167 (240)
                      ...     ..+  +...-.....|+++|  ...+|....  ..+.|...++...       ....+.....         
T Consensus       112 ~~~-----~~l--~~~~l~~P~~iavdp--~~G~lY~tD~g~~~~I~r~~~dG~-------~~~~l~~~~~---------  166 (628)
T 4a0p_A          112 QHR-----QVL--VWKDLDSPRALALDP--AEGFMYWTEWGGKPKIDRAAMDGS-------ERTTLVPNVG---------  166 (628)
T ss_dssp             TTC-----EEE--ECSSCCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSC-------SCEEEECSCS---------
T ss_pred             CcE-----EEE--EeCCCCCcccEEEcc--CCCeEEEeCCCCCCEEEEEeCCCC-------ceEEEECCCC---------
Confidence            310     111  112234568899987  444444443  2456666655431       1111111111         


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                       ..+.+++++...     .|..+....    +.|..++++...
T Consensus       167 -~P~GlalD~~~~-----~LY~aD~~~----~~I~~~d~dG~~  199 (628)
T 4a0p_A          167 -RANGLTIDYAKR-----RLYWTDLDT----NLIESSNMLGLN  199 (628)
T ss_dssp             -SEEEEEEETTTT-----EEEEEETTT----TEEEEEETTSCS
T ss_pred             -CcceEEEccccC-----EEEEEECCC----CEEEEEcCCCCc
Confidence             123788998765     555555433    788888876543

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=91.00  E-value=5.3  Score=32.25  Aligned_cols=117  Identities=9%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             ceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCCC-CcEEEEeE-ee-e----cCccEEEEEEcCC--CCCCEEEEEec--
Q 026295           11 GTTSSSWNYCGQ-RLATGSTDGTLSIFDSPDPSS-SSFTCNLK-TK-V----HAGAILKVVWVPP--EFGDAVACICS--   78 (240)
Q Consensus        11 ~v~~~~~s~~~~-~l~~~~~d~~i~iw~~~~~~~-~~~~~~~~-~~-~----h~~~v~~~~~~~~--~~~~~l~s~~~--   78 (240)
                      .-+.|+|.|+|. +|+++...|.|++++...... ....-+.. +. +    ..+....|+|.|+  ..+.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            456899999996 566667889999997542210 01111111 11 1    1356789999884  11344333322  


Q ss_pred             C----------CeEEEEEeeeccCC---CcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeC
Q 026295           79 D----------GSLLLWEEIVEDAQ---PLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYS  129 (240)
Q Consensus        79 d----------~~v~iwd~~~~~~~---~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~  129 (240)
                      +          ..|.-|.+...+..   ....+.+..+.  .....-..|.|.|  +|.+.++.+.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp--DG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP--DGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT--TSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC--CCcEEEEeCC
Confidence            1          13333444321111   11224444433  2234567899999  8876665554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=90.56  E-value=7  Score=32.87  Aligned_cols=158  Identities=4%  Similarity=-0.108  Sum_probs=81.7

Q ss_pred             ceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           11 GTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .+..++|++.+..|..+. ..+.|+.+++....   .+.+  +...-.....+++.+. .+++..+-...+.|.+.++..
T Consensus       350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~---~~~v--~~~~~~~p~GlAvD~~-~~~lY~tD~~~~~I~v~~~~G  423 (619)
T 3s94_A          350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSG---SQFV--VTAQIAHPDGIAVDWV-ARNLYWTDTGTDRIEVTRLNG  423 (619)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEE--ECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTS
T ss_pred             ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCc---cEEE--EECCCCCcCceEEecc-cCcEEEEeCCCCcEEEEeCCC
Confidence            466788988655555444 46778888876431   1111  1222235667888754 144444545567888887754


Q ss_pred             ccCCCcccEEEEEe-eeccccEEeEEEeecCC-CcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           90 EDAQPLQWKLCKSF-ESTSTQVLDVQFGVSST-SLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        90 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      .       . ...+ ...-.....|+++|  . |.++.+-. ..+.|...++..       .....+...         .
T Consensus       424 ~-------~-~~~l~~~~l~~P~~iavdp--~~G~ly~tD~g~~~~I~r~~~dG-------~~~~~l~~~---------~  477 (619)
T 3s94_A          424 T-------M-RKILISEDLEEPRAIVLDP--MVGYMYWTDWGEIPKIERAALDG-------SDRVVLVNT---------S  477 (619)
T ss_dssp             C-------S-CEEEECTTCCSEEEEEEET--TTTEEEEEECSSSCEEEEEETTS-------CSCEEEECS---------S
T ss_pred             C-------e-EEEEEECCCCCeeeEEEEc--CCCcEEEecCCCCCEEEEEccCC-------CccEEEEeC---------C
Confidence            3       1 1122 22335568899988  5 44333332 224454444432       111111110         0


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      .-..+.+++++...     .|..+....    +.|..++++..
T Consensus       478 l~~P~GlalD~~~~-----~LY~aD~~~----~~I~~~~~dG~  511 (619)
T 3s94_A          478 LGWPNGLALDYDEG-----KIYWGDAKT----DKIEVMNTDGT  511 (619)
T ss_dssp             CSCEEEEEEETTTT-----EEEEEETTT----TEEEEEESSSC
T ss_pred             CCCCeeeEEcccCC-----EEEEEECCC----CEEEEEecCCC
Confidence            11123788887665     455554432    67777776543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=90.42  E-value=8  Score=33.33  Aligned_cols=184  Identities=11%  Similarity=0.004  Sum_probs=98.4

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-------eecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-------KVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      ...|.++..+++|.+- .|..++-|..++....   ..+.....       ......|.++...++  |.+ ..|+.++-
T Consensus       312 ~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~l-Wigt~~~G  384 (781)
T 3v9f_A          312 NASARYIFQDSFNNIW-IGTWGGGINFISNAPP---TFHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GKL-WIGTDGGG  384 (781)
T ss_dssp             SSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC---SCEEEC----CCCSSCCSSSCEEEEEECTT--SCE-EEEEBSSC
T ss_pred             CCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC---cceeeccCccccccCCCCCcceEEEEEcCC--CCE-EEEeCCCc
Confidence            3478999999988744 4555566778887532   22222110       012356888888776  664 45555566


Q ss_pred             EEEEEeeeccCCCcccEEEEEe----eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSF----ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      |..++....        ....+    ......|.++...+  ++. |..|+.++-+..++..+      .+.. .+....
T Consensus       385 l~~~~~~~~--------~~~~~~~~~~~~~~~v~~i~~d~--~g~-lWigt~~~Gl~~~~~~~------~~~~-~~~~~~  446 (781)
T 3v9f_A          385 INVFENGKR--------VAIYNKENRELLSNSVLCSLKDS--EGN-LWFGTYLGNISYYNTRL------KKFQ-IIELEK  446 (781)
T ss_dssp             EEEEETTEE--------EEECC-----CCCSBEEEEEECT--TSC-EEEEETTEEEEEECSSS------CEEE-ECCSTT
T ss_pred             EEEEECCCC--------eEEEccCCCCCCCcceEEEEECC--CCC-EEEEeccCCEEEEcCCC------CcEE-EeccCC
Confidence            788886542        11111    12335688887765  666 56677766688888764      1211 111100


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                             .....+.++...+++      .|-+|..      +-|..|+..+..  +...............|+++...++
T Consensus       447 -------~~~~~v~~i~~d~~g------~lwigt~------~Gl~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~  505 (781)
T 3v9f_A          447 -------NELLDVRVFYEDKNK------KIWIGTH------AGVFVIDLASKK--VIHHYDTSNSQLLENFVRSIAQDSE  505 (781)
T ss_dssp             -------TCCCCEEEEEECTTS------EEEEEET------TEEEEEESSSSS--CCEEECTTTSSCSCSCEEEEEECTT
T ss_pred             -------CCCCeEEEEEECCCC------CEEEEEC------CceEEEeCCCCe--EEecccCcccccccceeEEEEEcCC
Confidence                   000122366666666      3656665      457777766543  2221111100011346888877766


Q ss_pred             C
Q 026295          238 I  238 (240)
Q Consensus       238 ~  238 (240)
                      +
T Consensus       506 g  506 (781)
T 3v9f_A          506 G  506 (781)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=89.28  E-value=13  Score=33.99  Aligned_cols=146  Identities=15%  Similarity=0.164  Sum_probs=82.7

Q ss_pred             CCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           21 GQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        21 ~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      ..+|+.|.          ..|.|.+|++.+.   ..+.+.... .+++|++++--.   |.++++.  ..+|++|++...
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~---kL~lv~~~~-v~g~v~al~~~~---g~Lla~i--g~~l~vy~l~~~  914 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG---KLQTVAEKE-VKGAVYSMVEFN---GKLLASI--NSTVRLYEWTTE  914 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETT---EEEEEEEEE-ESSCEEEEEEET---TEEEEEE--TTEEEEEEECTT
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECC---EEEEEEEEE-cCCcCEEEeeeC---CEEEEEc--CCEEEEEECCCC
Confidence            46888886          3478999998632   555555544 478899888533   5544443  468999999654


Q ss_pred             cCCCcccEEEE-EeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           91 DAQPLQWKLCK-SFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        91 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                             +.++ ..... ..|..+....  .+.++++|..-..|.+...+..  ..+...... .....++.        
T Consensus       915 -------~~L~~~~~~~-~~i~~~~l~~--~~~~I~vgD~~~Sv~~~~y~~~--~~~L~~~a~-D~~~~~vt--------  973 (1158)
T 3ei3_A          915 -------KELRTECNHY-NNIMALYLKT--KGDFILVGDLMRSVLLLAYKPM--EGNFEEIAR-DFNPNWMS--------  973 (1158)
T ss_dssp             -------SCEEEEEEEC-CCSCEEEEEE--ETTEEEEEESSBCEEEEEEETT--TTEEEEEEE-CCSCBCEE--------
T ss_pred             -------ceEEEEeecc-ccEEEEEEec--cCCEEEEEEhhheEEEEEEEcC--CCeEEEEEe-ecccccEE--------
Confidence                   2222 11111 1122223323  4667888888778887766531  111111111 11122222        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                        ++.+-.+.      .++.+..+     |.|.++.....
T Consensus       974 --a~~~ld~~------t~l~aD~~-----gNl~vl~~~~~ 1000 (1158)
T 3ei3_A          974 --AVEILDDD------NFLGAENA-----FNLFVCQKDSA 1000 (1158)
T ss_dssp             --EEEEEETT------EEEEEETT-----SEEEEEEECTT
T ss_pred             --EEEEEccC------cEEEEcCC-----CcEEEEecCCC
Confidence              56655443      56777777     99999988653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=89.19  E-value=3.2  Score=32.07  Aligned_cols=29  Identities=7%  Similarity=0.198  Sum_probs=21.6

Q ss_pred             ccEEeEEEeecCCCcEEEEEeCCCcEEEEEe
Q 026295          108 TQVLDVQFGVSSTSLKLVAAYSDGHVKVYEL  138 (240)
Q Consensus       108 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~  138 (240)
                      ...+.|+|.|  +|..|+++...|.|++++.
T Consensus        18 ~~P~~i~~~p--dG~~l~V~e~~G~i~~~~~   46 (353)
T 2g8s_A           18 DHPWALAFLP--DNHGMLITLRGGELRHWQA   46 (353)
T ss_dssp             SSEEEEEECS--TTCCEEEEETTTEEEEEET
T ss_pred             CCcEEEEEcC--CCCEEEEEeCCceEEEEeC
Confidence            3467899999  8883445566799988874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=89.18  E-value=7.6  Score=31.24  Aligned_cols=54  Identities=13%  Similarity=0.115  Sum_probs=33.0

Q ss_pred             ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeee------ccccEEeEEEee
Q 026295           57 GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES------TSTQVLDVQFGV  117 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~  117 (240)
                      .....|+|.|+  |.++++-...+.|.+++...+.     ...+..+..      .......|+|+|
T Consensus        27 ~~P~~~a~~pd--G~l~V~e~~gg~I~~~~~~~g~-----~~~~~~~~~~~~~~~g~~Gllgia~~P   86 (454)
T 1cru_A           27 NKPHALLWGPD--NQIWLTERATGKILRVNPESGS-----VKTVFQVPEIVNDADGQNGLLGFAFHP   86 (454)
T ss_dssp             SSEEEEEECTT--SCEEEEETTTCEEEEECTTTCC-----EEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred             CCceEEEEcCC--CcEEEEEcCCCEEEEEECCCCc-----EeEEecCCccccccCCCCceeEEEECC
Confidence            45679999999  9877765433467777643221     123333321      245677899988

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=84.38  E-value=24  Score=32.21  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=48.6

Q ss_pred             cccceEEEEECCC------CCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecC
Q 026295            8 LDKGTTSSSWNYC------GQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         8 h~~~v~~~~~s~~------~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      .+..|.|+++.+.      ++++|.|.. |++|+|+++.     ..+.+....- -+....++.+..-....+|..|-.|
T Consensus       552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~-----~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~d  626 (1158)
T 3ei3_A          552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP-----SFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGD  626 (1158)
T ss_dssp             CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT-----TCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETT
T ss_pred             CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC-----CCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCC
Confidence            3568999999863      369999996 9999999997     3333322211 1123334433211114678888899


Q ss_pred             CeEEEEEeee
Q 026295           80 GSLLLWEEIV   89 (240)
Q Consensus        80 ~~v~iwd~~~   89 (240)
                      |.+.-+.+..
T Consensus       627 G~l~~~~~d~  636 (1158)
T 3ei3_A          627 GALFYFGLNI  636 (1158)
T ss_dssp             SEEEEEEECT
T ss_pred             CeEEEEEEcC
Confidence            9887666643

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.87  E-value=16  Score=32.57  Aligned_cols=31  Identities=26%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295          109 QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus       109 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      .+.++...+  +..++++-+.|+++|+|++.+.
T Consensus       237 ~~~~~~~~~--~~~~lftl~~D~~LRiWsl~t~  267 (950)
T 4gq2_M          237 TIISMIFLS--TYNVLVMLSLDYKLKVLDLSTN  267 (950)
T ss_dssp             CEEEEEEET--TTTEEEEEETTCEEEEEETTTT
T ss_pred             eEEEEeecC--CCcEEEEEECCCEEEEEECCCC
Confidence            445556555  7778999999999999999883

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=81.74  E-value=13  Score=26.95  Aligned_cols=115  Identities=12%  Similarity=0.091  Sum_probs=62.1

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec--CccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH--AGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      .++.|+++|.+.++  .||.|.-++........+.-....-+.  =..+..|.+.|+  |.+.+..  |+.+.  .-...
T Consensus        91 ~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~--G~Lyav~--dg~ly--r~~~P  162 (236)
T 1tl2_A           91 QFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN--GYLYAVH--GQQFY--KALPP  162 (236)
T ss_dssp             SEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT--SCEEEEE--TTEEE--EECCC
T ss_pred             eEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC--ceEEEEe--CCcEE--ecCCC
Confidence            68899999998888  558887666533322222111111111  135789999999  8877666  77743  22222


Q ss_pred             cCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCc
Q 026295           91 DAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDP  141 (240)
Q Consensus        91 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~  141 (240)
                      ......|....+.-  ..-...+.+.|.|  ++.+.++.  +|  ++|....+
T Consensus       163 ~~~~~~wl~~~~~~g~~g~~~yr~l~f~~--~G~l~~v~--~g--~~Y~~~~p  209 (236)
T 1tl2_A          163 VSNQDNWLARATKIGQGGWDTFKFLFFSS--VGTLFGVQ--GG--KFYEDYPP  209 (236)
T ss_dssp             SSTTCCHHHHCEEEESSSGGGEEEEEECT--TSCEEEEE--TT--EEEEESCC
T ss_pred             CCCCcccccccceeccCCcceEEEEEECC--CCcEEEEe--CC--eEEecCCc
Confidence            22223332212221  2223445567877  88755544  66  55555443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=80.87  E-value=24  Score=33.24  Aligned_cols=32  Identities=3%  Similarity=0.113  Sum_probs=21.1

Q ss_pred             eEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc
Q 026295          172 SISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW  213 (240)
Q Consensus       172 ~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~  213 (240)
                      ++.-++..+     ++..-..-     |.|++||+.++...+
T Consensus       263 ~~~vs~k~g-----~iy~itk~-----G~~~~~d~~t~~~i~  294 (1630)
T 1xi4_A          263 AMQISEKHD-----VVFLITKY-----GYIHLYDLETGTCIY  294 (1630)
T ss_pred             EEEeccccC-----EEEEEecC-----ceEEEEecccchhhh
Confidence            455555554     44444444     999999999886554

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=80.75  E-value=14  Score=31.72  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=19.5

Q ss_pred             CCcEEEEEeCCCcEEEEEecC
Q 026295          120 TSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +..++++-+.|.++|+|++.+
T Consensus       230 ~~~fLftL~~Dh~LRiWsL~t  250 (729)
T 3f7f_A          230 HERYLIVLTQNCHLKIWDLTS  250 (729)
T ss_dssp             TTTEEEEEETTCEEEEEETTT
T ss_pred             CCcEEEEEEcCCeEEEEEcCC
Confidence            577899999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	0.001
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.002
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 7e-06
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 16/127 (12%)

Query: 11  GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG 70
           G+ +      G  L +GS D T+ ++D      S+  C +    H   +  V++     G
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWD-----VSTGMCLMTLVGHDNWVRGVLFHSG--G 259

Query: 71  DAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD 130
             +     D +L +W+           +  K+  +    V  + F    T+  +V    D
Sbjct: 260 KFILSCADDKTLRVWD-------YKNKRCMKTLNAHEHFVTSLDF--HKTAPYVVTGSVD 310

Query: 131 GHVKVYE 137
             VKV+E
Sbjct: 311 QTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 7e-05
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 9   DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE 68
           D       ++  G+ + + + D TL ++D       +  C      H   +  + +    
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYK-----NKRCMKTLNAHEHFVTSLDFHK-- 299

Query: 69  FGDAVACICSDGSLLLWE 86
               V     D ++ +WE
Sbjct: 300 TAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 22/175 (12%), Positives = 47/175 (26%), Gaps = 38/175 (21%)

Query: 16  SWNYCGQRLATGSTDGTLSIFD-------------SPDPSSSSFTCNLKTKVHAGAILKV 62
             N  G  +A+ S D T+ ++                     S+         + A    
Sbjct: 150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209

Query: 63  VWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL 122
                + G  +     D ++ +W+               +       V  V F   S   
Sbjct: 210 TKKSGKPGPFLLSGSRDKTIKMWD-------VSTGMCLMTLVGHDNWVRGVLF--HSGGK 260

Query: 123 KLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 177
            +++   D  ++V++       KN +           VT          S+ ++ 
Sbjct: 261 FILSCADDKTLRVWD------YKNKRCMKTLNAHEHFVT----------SLDFHK 299

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.7 bits (101), Expect = 8e-06
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 13  TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDA 72
           +  +WN    ++A    +  + I+   + S + +    + K H G +  V W P    + 
Sbjct: 11  SCHAWNKDRTQIAICPNNHEVHIY---EKSGNKWVQVHELKEHNGQVTGVDWAPD--SNR 65

Query: 73  VACICSDGSLLLWEEIVEDAQPLQWKLC 100
           +    +D +  +W       +P    L 
Sbjct: 66  IVTCGTDRNAYVWTLKGRTWKPTLVILR 93

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 14  SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV 73
           S  + YCG+   +   D  L+ + +P  +S      +     + ++L            +
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGAS------IFQSKESSSVLSCDISV--DDKYI 321

Query: 74  ACICSDGSLLLWE 86
                D    ++E
Sbjct: 322 VTGSGDKKATVYE 334

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 1e-05
 Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 21/168 (12%)

Query: 17  WNYCGQRLATGSTDGTLSIFDSPDPSS--SSFTCNLKTKVHAGAILKVVWVPPEFGDAVA 74
               G+ +A GS D  + ++DS          + N     H  ++  VV+     G +V 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD--GQSVV 270

Query: 75  CICSDGSLLLW-----EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS 129
               D S+ LW         +   P       ++      VL V    +     +++   
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVAT--TQNDEYILSGSK 328

Query: 130 DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 177
           D  V  ++       K+       Q   +SV     +  ++   S  P
Sbjct: 329 DRGVLFWD------KKSGNPLLMLQGHRNSVI----SVAVANGSSLGP 366

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 18/141 (12%), Positives = 42/141 (29%), Gaps = 20/141 (14%)

Query: 9   DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSS-------SFTCNLKTKVHAGAILK 61
                S  +   GQ + +GS D ++ +++  + ++        S TC +    H   +L 
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 62  VVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQF----GV 117
           V        + +     D  +L W+                 +     V+ V       +
Sbjct: 314 VATTQN--DEYILSGSKDRGVLFWD-------KKSGNPLLMLQGHRNSVISVAVANGSSL 364

Query: 118 SSTSLKLVAAYSDGHVKVYEL 138
                       D   ++++ 
Sbjct: 365 GPEYNVFATGSGDCKARIWKY 385

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 14/124 (11%)

Query: 13  TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDA 72
            +  +   G   ATGS D T  +FD                     I  V +     G  
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFSKS--GRL 284

Query: 73  VACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGH 132
           +     D +  +W+        L+            +V  +    +   + +     D  
Sbjct: 285 LLAGYDDFNCNVWD-------ALKADRAGVLAGHDNRVSCLGV--TDDGMAVATGSWDSF 335

Query: 133 VKVY 136
           +K++
Sbjct: 336 LKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 11  GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFG 70
           G TS S++  G+ L  G  D   +++D+                H   +  +       G
Sbjct: 272 GITSVSFSKSGRLLLAGYDDFNCNVWDAL-----KADRAGVLAGHDNRVSCLGVTDD--G 324

Query: 71  DAVACICSDGSLLLW 85
            AVA    D  L +W
Sbjct: 325 MAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 30/161 (18%)

Query: 17  WNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI 76
                +   +G+ D +  ++D          C      H   I  + + P   G+A A  
Sbjct: 192 LAPDTRLFVSGACDASAKLWDV-----REGMCRQTFTGHESDINAICFFPN--GNAFATG 244

Query: 77  CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVY 136
             D +  L++      +  Q  +  S ++    +  V F  S +   L+A Y D +  V+
Sbjct: 245 SDDATCRLFDL-----RADQELMTYSHDNIICGITSVSF--SKSGRLLLAGYDDFNCNVW 297

Query: 137 ELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNP 177
           +                    + V+           +    
Sbjct: 298 D------ALKADRAGVLAGHDNRVS----------CLGVTD 322

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 14/149 (9%)

Query: 4   AVATLDKGTTSS--SWNYCGQRLATGSTDGTLSIFD------SPDPSSSSFTCNLKTKVH 55
           A A   K   +   S + C     + S DG L ++D            S      K+ +H
Sbjct: 5   ATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 56  AGAILKVVWVPPEFGDAVACICSDGSLLLW------EEIVEDAQPLQWKLCKSFESTSTQ 109
              +L+ +         VA     G LL +      E      + L        + +   
Sbjct: 65  HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 110 VLDVQFGVSSTSLKLVAAYSDGHVKVYEL 138
           +          S +LVA    G   +++ 
Sbjct: 125 LKWGASNDRLLSHRLVATDVKGTTYIWKF 153

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 16  SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVAC 75
           +W+  G ++A+ S D T+ I++      ++        V      + + +      A+  
Sbjct: 245 TWSPDGTKIASASADKTIKIWN-----VATLKVEKTIPVGTRIEDQQLGIIWT-KQALVS 298

Query: 76  ICSDGSLLLWE 86
           I ++G +    
Sbjct: 299 ISANGFINFVN 309

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE 68
          +          L   S DG+L+++   D  + +    L++  +   +L   ++   
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYK-FDIQAKNVDL-LQSLRYKHPLLCCNFIDNT 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.98
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.97
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.96
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.93
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.93
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.91
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.85
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.79
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.68
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.61
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.59
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.59
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.46
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.42
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.3
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.3
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.16
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.11
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.09
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.05
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.04
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.87
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.83
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.79
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.72
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.65
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.65
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.63
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.59
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.52
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.46
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.41
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.2
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.17
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.17
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.11
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.04
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.53
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.44
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.51
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.42
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.37
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	92.62
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	92.22
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	92.04
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	91.13
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	90.77
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.33
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	86.86
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	86.75
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	86.49
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.4
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.38
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	83.81
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	82.3
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	80.6
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	80.07

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-32  Score=210.99  Aligned_cols=197  Identities=13%  Similarity=0.201  Sum_probs=161.1

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec--CC
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS--DG   80 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--d~   80 (240)
                      +.+.+|.+.|++++|+|+|++||+|+.||+|+|||+...   .......+..|.++|.+++|+|+  ++++++++.  +.
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~d--~~~l~~~~~~~~~  126 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT---THILKTTIPVFSGPVKDISWDSE--SKRIAAVGEGRER  126 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST---TCCEEEEEECSSSCEEEEEECTT--SCEEEEEECCSSC
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecc---ccccccccccccCcccccccccc--ccccccccccccc
Confidence            346789999999999999999999999999999999854   22344567889999999999999  999998875  45


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE-EEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK-LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .+++|++..+       +....+..|...|.+++|+|  ++.+ |++|+.|+.|++||+++      .+....+..|...
T Consensus       127 ~~~v~~~~~~-------~~~~~l~~h~~~v~~v~~~~--~~~~~l~sgs~d~~i~i~d~~~------~~~~~~~~~~~~~  191 (311)
T d1nr0a1         127 FGHVFLFDTG-------TSNGNLTGQARAMNSVDFKP--SRPFRIISGSDDNTVAIFEGPP------FKFKSTFGEHTKF  191 (311)
T ss_dssp             SEEEEETTTC-------CBCBCCCCCSSCEEEEEECS--SSSCEEEEEETTSCEEEEETTT------BEEEEEECCCSSC
T ss_pred             cccccccccc-------cccccccccccccccccccc--cceeeecccccccccccccccc------ccccccccccccc
Confidence            6999999766       66677888999999999999  7774 78899999999999987      5777777777777


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +.          ++.|+|++.     +|++++.|     +.|++|+..+...............+|...|++++|+|++.
T Consensus       192 i~----------~v~~~p~~~-----~l~~~~~d-----~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~  251 (311)
T d1nr0a1         192 VH----------SVRYNPDGS-----LFASTGGD-----GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT  251 (311)
T ss_dssp             EE----------EEEECTTSS-----EEEEEETT-----SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSS
T ss_pred             cc----------ccccCcccc-----cccccccc-----ccccccccccccccccccccccccccccccccccccCCCCC
Confidence            76          999999987     89999998     99999998775433222111122346888999999999874

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-31  Score=206.90  Aligned_cols=195  Identities=16%  Similarity=0.232  Sum_probs=157.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.|++|.+.|++++|+|++++||+|+.||+|+|||+.     +.+.+..+..|...|.+++|+|+  +.++++++.|+.+
T Consensus        49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~-----~~~~~~~~~~~~~~v~~v~~~~~--~~~l~~~~~d~~i  121 (340)
T d1tbga_          49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPS--GNYVACGGLDNIC  121 (340)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-----TTEEEEEEECSCSCEEEEEECTT--SSEEEEEETTCCE
T ss_pred             EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecc-----cceeEEEEecccccEEeeEeecc--ceeeeeeccccee
Confidence            4588999999999999999999999999999999998     66788899999999999999999  9999999999999


Q ss_pred             EEEEeeeccC----------------------------------------------------------------------
Q 026295           83 LLWEEIVEDA----------------------------------------------------------------------   92 (240)
Q Consensus        83 ~iwd~~~~~~----------------------------------------------------------------------   92 (240)
                      ++|+......                                                                      
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            9998332100                                                                      


Q ss_pred             ----------CCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeee--ccccee
Q 026295           93 ----------QPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ--NAIDSV  160 (240)
Q Consensus        93 ----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~--~~~~~v  160 (240)
                                .....+++..+..|...|.+++|+|  ++.+|++++.||.|++|+++.      ......+.  .+...+
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p--~~~~l~s~s~d~~i~~~~~~~------~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRA------DQELMTYSHDNIICGI  273 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT------TEEEEEECCTTCCSCE
T ss_pred             eecCceEEEEECCCCcEEEEEeCCCCCeEEEEECC--CCCEEEEEeCCCeEEEEeecc------cccccccccccccCce
Confidence                      0012233555667888999999999  999999999999999999987      33333332  222233


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                                .+++|+|++.     +|++|+.|     |.|+|||+.+.+    ....+.   +|..+|++|+|+||+.
T Consensus       274 ----------~~~~~s~~~~-----~l~~g~~d-----g~i~iwd~~~~~----~~~~~~---~H~~~V~~l~~s~d~~  325 (340)
T d1tbga_         274 ----------TSVSFSKSGR-----LLLAGYDD-----FNCNVWDALKAD----RAGVLA---GHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             ----------EEEEECSSSC-----EEEEEETT-----SCEEEEETTTCC----EEEEEC---CCSSCEEEEEECTTSS
T ss_pred             ----------EEEEECCCCC-----EEEEEECC-----CEEEEEECCCCc----EEEEEc---CCCCCEEEEEEeCCCC
Confidence                      3899999987     89999999     999999987654    334444   5778999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2e-31  Score=209.36  Aligned_cols=197  Identities=13%  Similarity=0.194  Sum_probs=156.3

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      .++|+|++|+|+|++||+|+.|+.|+||+....   ....+..+++|.++|.+++|+|+  +++|++++.|+.|++||+.
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~---~~~~~~~l~gH~~~V~~l~fsp~--~~~l~s~s~D~~i~vWd~~   81 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGN---KWVQVHELKEHNGQVTGVDWAPD--SNRIVTCGTDRNAYVWTLK   81 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETT---EEEEEEEEECCSSCEEEEEEETT--TTEEEEEETTSCEEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCC---CEEEEEEecCCCCCEEEEEECCC--CCEEEEEECCCeEEEEeec
Confidence            368999999999999999999999999999743   55678889999999999999999  9999999999999999997


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASC  168 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  168 (240)
                      ..     .+.+...+..+...|.+++|+|  ++++|++++.|++|++|++......  .........+...+.       
T Consensus        82 ~~-----~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~v~-------  145 (371)
T d1k8kc_          82 GR-----TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDW--WVCKHIKKPIRSTVL-------  145 (371)
T ss_dssp             TT-----EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTE--EEEEEECTTCCSCEE-------
T ss_pred             cc-----cccccccccccccccccccccc--ccccceeecccCcceeeeeeccccc--ccccccccccccccc-------
Confidence            64     2355666677889999999999  9999999999999999998764221  222223334444444       


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce-----------eEeeecCCCCCCceEEEEEecC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP-----------VAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                         +++|+|++.     +|++|+.|     +.|++|+..........           ...+....+|...|++++|+|+
T Consensus       146 ---~v~~~p~~~-----~l~s~s~D-----~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  212 (371)
T d1k8kc_         146 ---SLDWHPNSV-----LLAAGSCD-----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN  212 (371)
T ss_dssp             ---EEEECTTSS-----EEEEEETT-----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred             ---ccccccccc-----ceeccccC-----cEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecc
Confidence               899999987     89999999     99999998654321110           0112233468889999999999


Q ss_pred             CC
Q 026295          238 IG  239 (240)
Q Consensus       238 ~~  239 (240)
                      +.
T Consensus       213 g~  214 (371)
T d1k8kc_         213 GS  214 (371)
T ss_dssp             SS
T ss_pred             cc
Confidence            74

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=4e-30  Score=201.94  Aligned_cols=199  Identities=15%  Similarity=0.133  Sum_probs=156.2

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.+.+|.+.|++++|+|++++|++|+.|++|+|||+...   ..+....+.+|...|.+++|+|+  ++.|++++.|+.|
T Consensus        45 ~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~---~~~~~~~~~~~~~~v~~i~~~p~--~~~l~~~s~d~~i  119 (371)
T d1k8kc_          45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR---TWKPTLVILRINRAARCVRWAPN--EKKFAVGSGSRVI  119 (371)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT---EEEEEEECCCCSSCEEEEEECTT--SSEEEEEETTSSE
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccc---ccccccccccccccccccccccc--cccceeecccCcc
Confidence            346789999999999999999999999999999999743   55666677789999999999999  9999999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc------------ceeEE
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK------------NWQLQ  150 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~------------~~~~~  150 (240)
                      ++|++.....   .+........+...|.+++|+|  ++.+|++++.|++|++|+........            ..++.
T Consensus       120 ~i~~~~~~~~---~~~~~~~~~~~~~~v~~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (371)
T d1k8kc_         120 SICYFEQEND---WWVCKHIKKPIRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELM  194 (371)
T ss_dssp             EEEEEETTTT---EEEEEEECTTCCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEE
T ss_pred             eeeeeecccc---cccccccccccccccccccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeee
Confidence            9999876521   1123344456788999999999  99999999999999999986432110            01222


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceE
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVY  230 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~  230 (240)
                      .....+...          +.+++|+|++.     +|++++.|     +.|++||+....    ....+.   .|..+|+
T Consensus       195 ~~~~~~~~~----------v~~~~~s~~g~-----~l~s~~~d-----~~i~iwd~~~~~----~~~~~~---~~~~~v~  247 (371)
T d1k8kc_         195 FESSSSCGW----------VHGVCFSANGS-----RVAWVSHD-----STVCLADADKKM----AVATLA---SETLPLL  247 (371)
T ss_dssp             EECCCCSSC----------EEEEEECSSSS-----EEEEEETT-----TEEEEEEGGGTT----EEEEEE---CSSCCEE
T ss_pred             eeccCccCc----------EEEEEeecccc-----cccccccC-----CcceEEeeeccc----ceeeee---cccccce
Confidence            233333333          44999999987     89999998     999999998754    333344   4677999


Q ss_pred             EEEEecCC
Q 026295          231 AVAWALNI  238 (240)
Q Consensus       231 ~v~~sp~~  238 (240)
                      +++|+||+
T Consensus       248 s~~fs~d~  255 (371)
T d1k8kc_         248 AVTFITES  255 (371)
T ss_dssp             EEEEEETT
T ss_pred             eeeecCCC
Confidence            99999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=8.3e-30  Score=193.85  Aligned_cols=199  Identities=13%  Similarity=0.177  Sum_probs=147.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC---------------
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE---------------   68 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------   68 (240)
                      .|++|.+.|++++|+|++++|++|+.||+|+|||+.     +.+++.++.+|...|.+++|+|+.               
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~-----~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~   86 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW   86 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-----TCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECC-----CCCEEEEEeCCCCcEEEEeeecccccccccccccccccc
Confidence            478899999999999999999999999999999997     344555555666666655555530               


Q ss_pred             -------------------------CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE
Q 026295           69 -------------------------FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK  123 (240)
Q Consensus        69 -------------------------~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  123 (240)
                                               .+..+++++.|+.+++||++.+       +.+..+..+...+.+++|+|  ++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~  157 (317)
T d1vyhc1          87 DFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRMVRPNQ--DGTL  157 (317)
T ss_dssp             ETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECT--TSSE
T ss_pred             cccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccc-------eeeeEEccCCCcceeeeccc--CCCE
Confidence                                     0566777888888888888765       67788888889999999998  9999


Q ss_pred             EEEEeCCCcEEEEEecCcccccceeEEeeeecccc---------------------------------------------
Q 026295          124 LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID---------------------------------------------  158 (240)
Q Consensus       124 l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------  158 (240)
                      |++++.|+.|++|++.+...      ...+..+..                                             
T Consensus       158 l~~~~~d~~v~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  231 (317)
T d1vyhc1         158 IASCSNDQTVRVWVVATKEC------KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  231 (317)
T ss_dssp             EEEEETTSCEEEEETTTCCE------EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             EEEEeCCCeEEEEeecccee------eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEE
Confidence            99999999999999875321      111111000                                             


Q ss_pred             -------eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          159 -------SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       159 -------~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                             .+.....+...+.+++|+|++.     +|++|+.|     |.|+|||+.+.+..    ..+.   +|.+.|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~s~~~d-----g~i~iwd~~~~~~~----~~~~---~h~~~V~~  294 (317)
T d1vyhc1         232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGK-----FILSCADD-----KTLRVWDYKNKRCM----KTLN---AHEHFVTS  294 (317)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECSSSS-----CEEEEETT-----TEEEEECCTTSCCC----EEEE---CCSSCEEE
T ss_pred             EECCCCcEEEEEeCCCCCEEEEEECCCCC-----EEEEEECC-----CeEEEEECCCCcEE----EEEc---CCCCCEEE
Confidence                   0000111223456889999887     89999999     99999999876533    3344   57779999


Q ss_pred             EEEecCCC
Q 026295          232 VAWALNIG  239 (240)
Q Consensus       232 v~~sp~~~  239 (240)
                      ++|+|++.
T Consensus       295 ~~~s~~~~  302 (317)
T d1vyhc1         295 LDFHKTAP  302 (317)
T ss_dssp             EEECSSSS
T ss_pred             EEEcCCCC
Confidence            99999975

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-29  Score=196.12  Aligned_cols=189  Identities=15%  Similarity=0.273  Sum_probs=154.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .|.+.|.+++|+|+|++||+|+ ||.|+|||+...............+|++.|.+++|+|+  +++|++++.|+.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~d--g~~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD--GCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT--SSEEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCC--CCEEEEeeccccccccc
Confidence            6889999999999999999997 79999999975432222223344578999999999999  99999999999999999


Q ss_pred             eeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccc
Q 026295           87 EIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKA  166 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  166 (240)
                      +.....     .....+..+...+..++|+|  ++.++++++.|+.|++|++.+      .++......+...+.     
T Consensus       126 ~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~------~~~~~~~~~~~~~v~-----  187 (337)
T d1gxra_         126 LAAPTP-----RIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHN------QTLVRQFQGHTDGAS-----  187 (337)
T ss_dssp             CCCC-------EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTT------TEEEEEECCCSSCEE-----
T ss_pred             cccccc-----cccccccccccccccccccc--ccccccccccccccccccccc------ccccccccccccccc-----
Confidence            875432     56677788889999999998  999999999999999999987      466666666666666     


Q ss_pred             cceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          167 SCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       167 ~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                           +++|+|++.     .+++++.|     +.|++||+++..    ....+    .|...|++++|+|++.
T Consensus       188 -----~l~~s~~~~-----~~~~~~~d-----~~v~i~d~~~~~----~~~~~----~~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         188 -----CIDISNDGT-----KLWTGGLD-----NTVRSWDLREGR----QLQQH----DFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             -----EEEECTTSS-----EEEEEETT-----SEEEEEETTTTE----EEEEE----ECSSCEEEEEECTTSS
T ss_pred             -----ccccccccc-----cccccccc-----ccccccccccce----eeccc----ccccceEEEEEccccc
Confidence                 899999987     89999998     999999987654    22222    3677999999999863

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=1.6e-28  Score=188.41  Aligned_cols=195  Identities=15%  Similarity=0.217  Sum_probs=153.2

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCC--CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCC
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTD--GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDG   80 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d--~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~   80 (240)
                      .+..|.+.|.+++|+|++++|++++.+  ..++||+++     +.+....+.+|...|.+++|+|+  ++ .|++++.|+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~-----~~~~~~~l~~h~~~v~~v~~~~~--~~~~l~sgs~d~  169 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-----TGTSNGNLTGQARAMNSVDFKPS--RPFRIISGSDDN  169 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-----TCCBCBCCCCCSSCEEEEEECSS--SSCEEEEEETTS
T ss_pred             ccccccCccccccccccccccccccccccccccccccc-----ccccccccccccccccccccccc--ceeeeccccccc
Confidence            366789999999999999999999864  569999998     55667788899999999999998  76 488899999


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccccee
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSV  160 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v  160 (240)
                      .|++||++..       +....+..|...|.++.|+|  ++.++++++.|+.|++||+++.      .....+...... 
T Consensus       170 ~i~i~d~~~~-------~~~~~~~~~~~~i~~v~~~p--~~~~l~~~~~d~~v~~~d~~~~------~~~~~~~~~~~~-  233 (311)
T d1nr0a1         170 TVAIFEGPPF-------KFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDG------TKTGVFEDDSLK-  233 (311)
T ss_dssp             CEEEEETTTB-------EEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTC------CEEEECBCTTSS-
T ss_pred             cccccccccc-------ccccccccccccccccccCc--cccccccccccccccccccccc------cccccccccccc-
Confidence            9999999876       88888889999999999999  9999999999999999999873      333333221110 


Q ss_pred             eccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          161 TMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       161 ~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                        ...+...+.+++|+|++.     +|++|+.|     +.|+|||+++++    ...++..+..+...+.++.|+++
T Consensus       234 --~~~h~~~V~~~~~s~~~~-----~l~tgs~D-----g~v~iwd~~t~~----~~~~l~~~~~~~~~~~~~~~~~~  294 (311)
T d1nr0a1         234 --NVAHSGSVFGLTWSPDGT-----KIASASAD-----KTIKIWNVATLK----VEKTIPVGTRIEDQQLGIIWTKQ  294 (311)
T ss_dssp             --SCSSSSCEEEEEECTTSS-----EEEEEETT-----SEEEEEETTTTE----EEEEEECCSSGGGCEEEEEECSS
T ss_pred             --cccccccccccccCCCCC-----EEEEEeCC-----CeEEEEECCCCc----EEEEEECCCCccceEEEEEecCC
Confidence              011222344999999987     89999998     999999987654    34455554444456677777665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=6.9e-28  Score=183.21  Aligned_cols=198  Identities=16%  Similarity=0.101  Sum_probs=146.8

Q ss_pred             cchhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe-eecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            2 DKAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT-KVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         2 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+.+++|.+.|++++|+|++++|++|+.||+|++||+.     +++++..+ ..|...|.+++|+|+  +.+ ++++.|+
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~-----~~~~~~~~~~~h~~~v~~v~~~~~--g~~-~~~~~d~   76 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS-----TGISNRVFPDVHATMITGIKTTSK--GDL-FTVSWDD   76 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TCCEEECSSCSCSSCEEEEEECTT--SCE-EEEETTT
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECC-----CCcEEEEEcCCCCCcEEEEEeecc--cee-eccccee
Confidence            46688999999999999999999999999999999998     44566666 468999999999998  775 5667899


Q ss_pred             eEEEEEeeeccCCC---------cccE-----------------EEEEee-------eccccEEeEEEeecCCCcEEEEE
Q 026295           81 SLLLWEEIVEDAQP---------LQWK-----------------LCKSFE-------STSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        81 ~v~iwd~~~~~~~~---------~~~~-----------------~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                      .+++|+........         ....                 .+..+.       .....+.+++|+|  ++.+|+++
T Consensus        77 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~--~~~~l~~g  154 (299)
T d1nr0a2          77 HLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN--DKQFVAVG  154 (299)
T ss_dssp             EEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT--TSCEEEEE
T ss_pred             eEEEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence            99999965321100         0000                 000000       1224567889988  99999999


Q ss_pred             eCCCcEEEEEecCcccccceeEEe-eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          128 YSDGHVKVYELLDPLILKNWQLQA-EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       128 ~~dg~v~iw~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      +.||.|++||+++.      +... ....|...+.          +++|+|++.     +|++++.|     +.|++|++
T Consensus       155 ~~dg~i~~~d~~~~------~~~~~~~~~~~~~i~----------~~~~~~~~~-----~l~~~~~d-----~~i~~~~~  208 (299)
T d1nr0a2         155 GQDSKVHVYKLSGA------SVSEVKTIVHPAEIT----------SVAFSNNGA-----FLVATDQS-----RKVIPYSV  208 (299)
T ss_dssp             ETTSEEEEEEEETT------EEEEEEEEECSSCEE----------EEEECTTSS-----EEEEEETT-----SCEEEEEG
T ss_pred             cccccccccccccc------ccccccccccccccc----------ccccccccc-----cccccccc-----cccccccc
Confidence            99999999999862      2221 2234555555          899999887     89999998     99999999


Q ss_pred             ecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          207 DEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .+.....    ......+|..+|++++|+|++.
T Consensus       209 ~~~~~~~----~~~~~~~h~~~v~~l~~s~~~~  237 (299)
T d1nr0a2         209 ANNFELA----HTNSWTFHTAKVACVSWSPDNV  237 (299)
T ss_dssp             GGTTEES----CCCCCCCCSSCEEEEEECTTSS
T ss_pred             ccccccc----cccccccccccccccccccccc
Confidence            7754221    1233446888999999999874

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-27  Score=185.52  Aligned_cols=185  Identities=18%  Similarity=0.253  Sum_probs=155.4

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..|.+.|.+++|+|++++|++|+.|+.|++||+...   ..+....+..|...+..+.|+|+  +.++++++.|+.|++|
T Consensus        94 ~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~d~~i~~~  168 (337)
T d1gxra_          94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---TPRIKAELTSSAPACYALAISPD--SKVCFSCCSDGNIAVW  168 (337)
T ss_dssp             SCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----EEEEEEECSSSCEEEEEECTT--SSEEEEEETTSCEEEE
T ss_pred             cCCCCcEEEEEEcCCCCEEEEeeccccccccccccc---ccccccccccccccccccccccc--cccccccccccccccc
Confidence            468889999999999999999999999999998754   45667778889999999999999  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      ++...       ++......+...|.+++|++  ++..+++++.|+.|++||+++      .+.+..+ .+...+.    
T Consensus       169 ~~~~~-------~~~~~~~~~~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~------~~~~~~~-~~~~~i~----  228 (337)
T d1gxra_         169 DLHNQ-------TLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLRE------GRQLQQH-DFTSQIF----  228 (337)
T ss_dssp             ETTTT-------EEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT------TEEEEEE-ECSSCEE----
T ss_pred             ccccc-------cccccccccccccccccccc--ccccccccccccccccccccc------ceeeccc-ccccceE----
Confidence            99876       77888888899999999998  999999999999999999987      3444333 2334444    


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                            +++|+|++.     +|++|+.|     +.|++|++......    . .   ..|...|++++|+|++.
T Consensus       229 ------~l~~~~~~~-----~l~~~~~d-----~~i~i~d~~~~~~~----~-~---~~~~~~i~~v~~s~~g~  278 (337)
T d1gxra_         229 ------SLGYCPTGE-----WLAVGMES-----SNVEVLHVNKPDKY----Q-L---HLHESCVLSLKFAYCGK  278 (337)
T ss_dssp             ------EEEECTTSS-----EEEEEETT-----SCEEEEETTSSCEE----E-E---CCCSSCEEEEEECTTSS
T ss_pred             ------EEEEccccc-----ccceeccc-----cccccccccccccc----c-c---cccccccceEEECCCCC
Confidence                  899999987     89999998     99999999765421    1 1   24778999999999874

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=6.2e-28  Score=189.57  Aligned_cols=190  Identities=17%  Similarity=0.224  Sum_probs=147.2

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe------------------eecCccEEEEEEcCCC
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT------------------KVHAGAILKVVWVPPE   68 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~------------------~~h~~~v~~~~~~~~~   68 (240)
                      +|.+.|+|++|+|+|++||+|+ |+.|+|||+...     +.+..+                  ..|...|.+++|+|+ 
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-  132 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-----SLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-  132 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-----CEEEEECC-----------------CCCCBEEEEEECTT-
T ss_pred             CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEeccc-----ceEeeecccccccccccccccccccCCCCCEEEEEECCC-
Confidence            5999999999999999999987 899999999732     333322                  356778999999999 


Q ss_pred             CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee
Q 026295           69 FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ  148 (240)
Q Consensus        69 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~  148 (240)
                       +++|++++.|+.|++|+...+       +.+..+.+|...|.+++|++  ++..+++++.++.+++||.++      ..
T Consensus       133 -~~~l~s~~~dg~v~i~~~~~~-------~~~~~~~~h~~~v~~~~~~~--~~~~~~~~~~~~~i~~~d~~~------~~  196 (388)
T d1erja_         133 -GKFLATGAEDRLIRIWDIENR-------KIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRT------GQ  196 (388)
T ss_dssp             -SSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTT------TE
T ss_pred             -CCcceeccccccccccccccc-------cccccccccccccccccccc--ccccccccccceeeeeeeccc------cc
Confidence             999999999999999999776       78888889999999999988  899999999999999999987      34


Q ss_pred             EEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCc
Q 026295          149 LQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDE  228 (240)
Q Consensus       149 ~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~  228 (240)
                      .......+...+           .+.|.|...    .+|++|+.|     +.|++|+..+...............+|...
T Consensus       197 ~~~~~~~~~~~~-----------~~~~~~~~~----~~l~~~~~d-----~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~  256 (388)
T d1erja_         197 CSLTLSIEDGVT-----------TVAVSPGDG----KYIAAGSLD-----RAVRVWDSETGFLVERLDSENESGTGHKDS  256 (388)
T ss_dssp             EEEEEECSSCEE-----------EEEECSTTC----CEEEEEETT-----SCEEEEETTTCCEEEEEC------CCCSSC
T ss_pred             cccccccccccc-----------cccccCCCC----CeEEEEcCC-----CeEEEeecccCccceeeccccccccCCCCC
Confidence            443333332222           455655432    289999998     999999998765444333333334468889


Q ss_pred             eEEEEEecCCC
Q 026295          229 VYAVAWALNIG  239 (240)
Q Consensus       229 v~~v~~sp~~~  239 (240)
                      |++++|+|++.
T Consensus       257 v~~l~~s~~~~  267 (388)
T d1erja_         257 VYSVVFTRDGQ  267 (388)
T ss_dssp             EEEEEECTTSS
T ss_pred             EEEEEECCCCC
Confidence            99999999863

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.7e-26  Score=172.83  Aligned_cols=162  Identities=17%  Similarity=0.233  Sum_probs=144.0

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC---------------
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE---------------   68 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------   68 (240)
                      .+..|...+.+++|++++++|++++.|+.|++|++.     ..+.+..+..|...+..+.|+|..               
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  212 (317)
T d1vyhc1         138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-----TKECKAELREHRHVVECISWAPESSYSSISEATGSETKK  212 (317)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-----TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC---
T ss_pred             EEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec-----cceeeEEEecCCCCceEEEEeeccccceeeccccceeee
Confidence            356788899999999999999999999999999998     556778888899999999998751               


Q ss_pred             ---CCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccc
Q 026295           69 ---FGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILK  145 (240)
Q Consensus        69 ---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~  145 (240)
                         .+.++++++.|+.|++|++..+       +++..+.+|...|.+++|+|  ++.+|++++.||.|++||+++     
T Consensus       213 ~~~~~~~~~~~~~d~~i~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~~~-----  278 (317)
T d1vyhc1         213 SGKPGPFLLSGSRDKTIKMWDVSTG-------MCLMTLVGHDNWVRGVLFHS--GGKFILSCADDKTLRVWDYKN-----  278 (317)
T ss_dssp             ----CCEEEEEETTSEEEEEETTTT-------EEEEEEECCSSCEEEEEECS--SSSCEEEEETTTEEEEECCTT-----
T ss_pred             eccCCceeEeccCCCEEEEEECCCC-------cEEEEEeCCCCCEEEEEECC--CCCEEEEEECCCeEEEEECCC-----
Confidence               1457899999999999999876       88999999999999999999  999999999999999999987     


Q ss_pred             ceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          146 NWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                       .+++..+..|...|.          +++|+|++.     +|++|+.|     +.|+|||
T Consensus       279 -~~~~~~~~~h~~~V~----------~~~~s~~~~-----~l~s~s~D-----g~i~iWd  317 (317)
T d1vyhc1         279 -KRCMKTLNAHEHFVT----------SLDFHKTAP-----YVVTGSVD-----QTVKVWE  317 (317)
T ss_dssp             -SCCCEEEECCSSCEE----------EEEECSSSS-----CEEEEETT-----SEEEEEC
T ss_pred             -CcEEEEEcCCCCCEE----------EEEEcCCCC-----EEEEEeCC-----CeEEEeC
Confidence             567778888877776          999999987     89999999     9999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.1e-25  Score=172.91  Aligned_cols=157  Identities=17%  Similarity=0.236  Sum_probs=139.4

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWE   86 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd   86 (240)
                      .+...+....+.+.+.++++|+.|+.|++||+.     +.+++..+.+|...|.+++|+|+  +.+|++++.|+.|++|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~-----~~~~~~~~~~h~~~i~~v~~~p~--~~~l~s~s~d~~i~~~~  254 (340)
T d1tbga_         182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHESDINAICFFPN--GNAFATGSDDATCRLFD  254 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-----TTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSCEEEEE
T ss_pred             ccceeEeeeccccccceeEEeecCceEEEEECC-----CCcEEEEEeCCCCCeEEEEECCC--CCEEEEEeCCCeEEEEe
Confidence            455678899999999999999999999999998     56788899999999999999999  99999999999999999


Q ss_pred             eeeccCCCcccEEEEEe--eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           87 EIVEDAQPLQWKLCKSF--ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      +...       ..+..+  ..+...|.+++|+|  ++.+|++++.||.|++||+.+      ++++..+..|...|.   
T Consensus       255 ~~~~-------~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~g~~dg~i~iwd~~~------~~~~~~~~~H~~~V~---  316 (340)
T d1tbga_         255 LRAD-------QELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVS---  316 (340)
T ss_dssp             TTTT-------EEEEEECCTTCCSCEEEEEECS--SSCEEEEEETTSCEEEEETTT------CCEEEEECCCSSCEE---
T ss_pred             eccc-------ccccccccccccCceEEEEECC--CCCEEEEEECCCEEEEEECCC------CcEEEEEcCCCCCEE---
Confidence            9765       555544  34567799999999  999999999999999999987      677888888887777   


Q ss_pred             cccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          165 KASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       165 ~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                             +++|+|++.     +|++|+.|     |.|+|||
T Consensus       317 -------~l~~s~d~~-----~l~s~s~D-----g~v~iWd  340 (340)
T d1tbga_         317 -------CLGVTDDGM-----AVATGSWD-----SFLKIWN  340 (340)
T ss_dssp             -------EEEECTTSS-----CEEEEETT-----SCEEEEC
T ss_pred             -------EEEEeCCCC-----EEEEEccC-----CEEEEeC
Confidence                   999999987     89999999     9999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-25  Score=169.69  Aligned_cols=190  Identities=15%  Similarity=0.232  Sum_probs=139.7

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.|++|.+.|++++|+|    |++|+.||+|++||+.     +.     ..+|...|.++.+++.   ..+++++.|+++
T Consensus         7 ~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~-----~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v   69 (287)
T d1pgua2           7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSS-----SM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTL   69 (287)
T ss_dssp             EEECCCSSCEEEEETTT----TEEEETTSCEEETTTT-----EE-----ECCCCSCEEEEECCST---TCCEEEETTTEE
T ss_pred             EEECCCCCceEEEEECc----EEEEeCCCeEEEEECC-----CC-----CCCCCCCEEEEEecCC---CeEEEEeecccc
Confidence            56889999999999987    9999999999999987     32     2478899999999764   557888999999


Q ss_pred             EEEEeeeccC-----------------------------------------------------------CCcc---c---
Q 026295           83 LLWEEIVEDA-----------------------------------------------------------QPLQ---W---   97 (240)
Q Consensus        83 ~iwd~~~~~~-----------------------------------------------------------~~~~---~---   97 (240)
                      ++|++....-                                                           ....   |   
T Consensus        70 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~  149 (287)
T d1pgua2          70 KVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS  149 (287)
T ss_dssp             EETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETT
T ss_pred             ccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeecc
Confidence            9998553210                                                           0000   0   


Q ss_pred             --EEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeE-EeeeecccceeeccccccceeeeE
Q 026295           98 --KLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQL-QAEFQNAIDSVTMFRKASCISASI  173 (240)
Q Consensus        98 --~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~v  173 (240)
                        .....+. .+...+.+++|+|  ++.+|++++.||.|++||+.+.      +. ...+..|...+.          ++
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~g~~dg~i~i~d~~~~------~~~~~~~~~h~~~v~----------~~  211 (287)
T d1pgua2         150 DLEVSFDLKTPLRAKPSYISISP--SETYIAAGDVMGKILLYDLQSR------EVKTSRWAFRTSKIN----------AI  211 (287)
T ss_dssp             EEEEEEECSSCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTT------EEEECCSCCCSSCEE----------EE
T ss_pred             ccceeeeeeeccCCceeEEEecc--Cccccccccccccccceeeccc------ccccccccccccccc----------ee
Confidence              0001111 2456789999999  9999999999999999999863      32 223455665555          89


Q ss_pred             EEeCCCCC-----CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          174 SWNPQKGE-----NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       174 ~~~p~~~~-----~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      +|+|....     .+..+|++|+.|     +.|+||+++.....   ..   ...+|...|++++|+|++
T Consensus       212 ~~~p~~~~~~~~~~~~~~l~sgs~D-----~~i~iw~~~~~~~~---~~---~~~~h~~~V~~v~~~~~~  270 (287)
T d1pgua2         212 SWKPAEKGANEEEIEEDLVATGSLD-----TNIFIYSVKRPMKI---IK---ALNAHKDGVNNLLWETPS  270 (287)
T ss_dssp             EECCCC------CCSCCEEEEEETT-----SCEEEEESSCTTCC---EE---ETTSSTTCEEEEEEEETT
T ss_pred             eecccccccccccCCCCeeEeecCC-----CeEEEEECCCCCeE---EE---EeCCCCCCeEEEEECCCC
Confidence            99987642     345589999999     99999998764322   22   234688899999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-24  Score=170.71  Aligned_cols=199  Identities=19%  Similarity=0.180  Sum_probs=144.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..|...|++++|+|++++|++|+.||.|++|+..     ..+.+..+.+|...|.++.|+++  +..+++++.++.+++|
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~~~i~~~  190 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIYSLDYFPS--GDKLVSGSGDRTVRIW  190 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEECTT--SSEEEEEETTSEEEEE
T ss_pred             cCCCCCEEEEEECCCCCcceeccccccccccccc-----ccccccccccccccccccccccc--cccccccccceeeeee
Confidence            3577789999999999999999999999999998     55778888899999999999998  9999999999999999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      |....       ........+ .....+.+.|. ++.+|++++.||.|++|+.++.      .....+.....   ....
T Consensus       191 d~~~~-------~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~------~~~~~~~~~~~---~~~~  252 (388)
T d1erja_         191 DLRTG-------QCSLTLSIE-DGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETG------FLVERLDSENE---SGTG  252 (388)
T ss_dssp             ETTTT-------EEEEEEECS-SCEEEEEECST-TCCEEEEEETTSCEEEEETTTC------CEEEEEC---------CC
T ss_pred             ecccc-------ccccccccc-cccccccccCC-CCCeEEEEcCCCeEEEeecccC------ccceeeccccc---cccC
Confidence            99765       555555544 44455556542 7788999999999999999873      33333221110   0011


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCccee-----EeeecCCCCCCceEEEEEecCCC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPV-----AELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~-----~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +...+.+++|+|++.     +|++|+.|     +.|++||+..........     ........|...|++++|+|++.
T Consensus       253 h~~~v~~l~~s~~~~-----~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  321 (388)
T d1erja_         253 HKDSVYSVVFTRDGQ-----SVVSGSLD-----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE  321 (388)
T ss_dssp             CSSCEEEEEECTTSS-----EEEEEETT-----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGC
T ss_pred             CCCCEEEEEECCCCC-----EEEEEECC-----CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCC
Confidence            222334999999987     89999999     999999997654322110     01111225788999999999863

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=9.5e-25  Score=172.28  Aligned_cols=172  Identities=16%  Similarity=0.150  Sum_probs=131.1

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEe------EeeecCccEEEEEEcCCCCCCEEEEEecCC
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNL------KTKVHAGAILKVVWVPPEFGDAVACICSDG   80 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~------~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~   80 (240)
                      .+...+++++|+|++ +||+|+.|++|+|||+.     +.+++.      .+.+|..+|.+++|+|+  +.+|++++.|+
T Consensus       182 ~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~-----~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~l~sgs~D~  253 (393)
T d1sq9a_         182 TPSQFATSVDISERG-LIATGFNNGTVQISELS-----TLRPLYNFESQHSMINNSNSIRSVKFSPQ--GSLLAIAHDSN  253 (393)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETT-----TTEEEEEEECCC---CCCCCEEEEEECSS--TTEEEEEEEET
T ss_pred             CCCCcEEEEEECCCC-EEEEEeCCCcEEEEeec-----ccccccccccccccccccceEEEcccccc--cceeeeecCCC
Confidence            345568999999998 89999999999999998     334443      34578999999999999  99999999887


Q ss_pred             ---eEEEEEeeeccCCCcccEEEEEe-------------eeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc
Q 026295           81 ---SLLLWEEIVEDAQPLQWKLCKSF-------------ESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL  144 (240)
Q Consensus        81 ---~v~iwd~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~  144 (240)
                         .|++||+..+       +++..+             .+|...|++++|+|  ++++|++++.|++|++||+++    
T Consensus       254 t~~~i~lwd~~~g-------~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp--d~~~l~S~s~D~~v~vWd~~~----  320 (393)
T d1sq9a_         254 SFGCITLYETEFG-------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND--SGETLCSAGWDGKLRFWDVKT----  320 (393)
T ss_dssp             TEEEEEEEETTTC-------CEEEEECBC--------CCBSBSSCEEEEEECS--SSSEEEEEETTSEEEEEETTT----
T ss_pred             Ccceeeecccccc-------eeeeeeccccccccceeeeecccCceeeeccCC--CCCeeEEECCCCEEEEEECCC----
Confidence               4899998765       344333             46889999999999  999999999999999999988    


Q ss_pred             cceeEEeeeecccceeecc---------cccc--ceeeeEEEeCCCCC-----CCCceEEEEecCCCCCCCeEEEEEe
Q 026295          145 KNWQLQAEFQNAIDSVTMF---------RKAS--CISASISWNPQKGE-----NQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       145 ~~~~~~~~~~~~~~~v~~~---------~~~~--~~~~~v~~~p~~~~-----~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                        ++++..+.+|...|...         +...  ..+.++.|.+.+..     .....|++++.|     +.|++|.-
T Consensus       321 --g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~~ir~~~~  391 (393)
T d1sq9a_         321 --KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD-----RSIRWFRE  391 (393)
T ss_dssp             --TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT-----TEEEEEEE
T ss_pred             --CCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcC-----CeEEEEeC
Confidence              68888888887665421         1111  13456667665433     122357788877     88888863

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.5e-24  Score=164.42  Aligned_cols=198  Identities=12%  Similarity=0.181  Sum_probs=137.3

Q ss_pred             hhcccccce-EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            4 AVATLDKGT-TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         4 ~~~~h~~~v-~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +|++|.+.| +|++|  ++++||+|+.||+|+|||+.     +.+++.++.+|+++|.+++|+|+   .+|++++.|+.|
T Consensus         7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~-----~~~~~~~l~~H~~~V~~l~~s~~---~~l~s~s~D~~i   76 (355)
T d1nexb2           7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSI-----NKKFLLQLSGHDGGVWALKYAHG---GILVSGSTDRTV   76 (355)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETT-----TTEEEEEEECCSSCEEEEEEETT---TEEEEEETTCCE
T ss_pred             EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECC-----CCcEEEEEECCCCCEEEEEEcCC---CEEEEEeccccc
Confidence            488998876 55554  68899999999999999998     66889999999999999999875   579999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCccccccee------------
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQ------------  148 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~------------  148 (240)
                      ++|+....       .........  ...+....+.+  ++.++++++.|+.|++||+++........            
T Consensus        77 ~iw~~~~~-------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  147 (355)
T d1nexb2          77 RVWDIKKG-------CCTHVFEGHNSTVRCLDIVEYK--NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP  147 (355)
T ss_dssp             EEEETTTT-------EEEEEECCCSSCEEEEEEEEET--TEEEEEEEETTSEEEEEECCC-----------CCCEEESCT
T ss_pred             cccccccc-------cccccccccccccccccccccc--ccceeeeecCCCcEEEEEccCCceeccccccceeccceecc
Confidence            99999765       544444433  33344555666  88899999999999999987532111000            


Q ss_pred             -----EEeeeecccc-------------------ee-----------eccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          149 -----LQAEFQNAID-------------------SV-----------TMFRKASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       149 -----~~~~~~~~~~-------------------~v-----------~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                           .......+..                   .+           ...........++.|+|.+.     ++++++.|
T Consensus       148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d  222 (355)
T d1nexb2         148 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERK-----RCISASMD  222 (355)
T ss_dssp             TTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTT-----EEEEEETT
T ss_pred             ccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccce-----eeeccccc
Confidence                 0000000000                   00           00000111334677888877     89999998


Q ss_pred             CCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          194 DTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       194 d~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                           +.|++|+..+..    ....+.   +|...|++++|+|+
T Consensus       223 -----~~i~i~d~~~~~----~~~~~~---~h~~~v~~~~~~~~  254 (355)
T d1nexb2         223 -----TTIRIWDLENGE----LMYTLQ---GHTALVGLLRLSDK  254 (355)
T ss_dssp             -----SCEEEEETTTCC----EEEEEC---CCSSCCCEEEECSS
T ss_pred             -----ceEEeeeccccc----cccccc---cccccccccccccc
Confidence                 999999987754    233333   57779999999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.7e-24  Score=162.99  Aligned_cols=189  Identities=15%  Similarity=0.312  Sum_probs=139.0

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +.|++|++.|.+ +++++|++||||+.||+|+|||+.     +++++.++.+|.+.|.+++|++    .+|++++.|+.+
T Consensus        10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~-----~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~   79 (342)
T d2ovrb2          10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV-----TGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTL   79 (342)
T ss_dssp             EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETT-----TCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCE
T ss_pred             EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECC-----CCCEEEEEeCCCCCEEEEEeCC----Cccccceecccc
Confidence            448899999865 467789999999999999999998     6678899999999999999965    478999999999


Q ss_pred             EEEEeeeccCC---------------------------------------------------------------------
Q 026295           83 LLWEEIVEDAQ---------------------------------------------------------------------   93 (240)
Q Consensus        83 ~iwd~~~~~~~---------------------------------------------------------------------   93 (240)
                      ++|+.......                                                                     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  159 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV  159 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCE
T ss_pred             cccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeE
Confidence            99984321000                                                                     


Q ss_pred             ----CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccce
Q 026295           94 ----PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI  169 (240)
Q Consensus        94 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  169 (240)
                          ......+..+..+...+  ..+.+  ++.++++++.||.|++||++.      .+++..+..|...+.        
T Consensus       160 ~~~d~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~s~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~--------  221 (342)
T d2ovrb2         160 KVWDPETETCLHTLQGHTNRV--YSLQF--DGIHVVSGSLDTSIRVWDVET------GNCIHTLTGHQSLTS--------  221 (342)
T ss_dssp             EEEEGGGTEEEEEECCCSSCE--EEEEE--CSSEEEEEETTSCEEEEETTT------CCEEEEECCCCSCEE--------
T ss_pred             EEeecccceeeEEEcCccccc--ccccC--CCCEEEEEeCCCeEEEeeccc------ceeeeEeccccccee--------
Confidence                00001112222232233  34445  778899999999999999887      566666666665554        


Q ss_pred             eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          170 SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       170 ~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                        +++++++       +|++|+.|     +.|++|+.....    ....+..+..|...+.+++|+|+
T Consensus       222 --~~~~~~~-------~l~s~s~d-----~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  271 (342)
T d2ovrb2         222 --GMELKDN-------ILVSGNAD-----STVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNKN  271 (342)
T ss_dssp             --EEEEETT-------EEEEEETT-----SCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECSS
T ss_pred             --EEecCCC-------EEEEEcCC-----CEEEEEeccccc----ccccccccceeeeceeecccCCC
Confidence              6777653       79999999     999999987654    33444556678889999999875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-24  Score=161.06  Aligned_cols=73  Identities=21%  Similarity=0.418  Sum_probs=63.7

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..|...|+|++|  ++++||+|+.||+|+|||+.     +++++.++.+|.+.|.+++|  +  +++|++++.|+.|++|
T Consensus        12 ~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~-----~~~~~~~l~~H~~~V~~v~~--~--~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKN-----TLECKRILTGHTGSVLCLQY--D--ERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESS-----SCCEEEEECCCSSCEEEEEC--C--SSEEEEEETTSCEEEE
T ss_pred             CCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECC-----CCcEEEEEecCCCCEeeeec--c--cceeeccccccccccc
Confidence            356678888764  79999999999999999998     66789999999999999987  5  7899999999999999


Q ss_pred             Eeee
Q 026295           86 EEIV   89 (240)
Q Consensus        86 d~~~   89 (240)
                      ++..
T Consensus        81 ~~~~   84 (293)
T d1p22a2          81 DVNT   84 (293)
T ss_dssp             ESSS
T ss_pred             cccc
Confidence            9654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2e-24  Score=170.37  Aligned_cols=175  Identities=14%  Similarity=0.105  Sum_probs=124.0

Q ss_pred             cccceEEEEECCC-----CCEEEEEeCCCcEEEEeCCCCCC----------CcEEE---EeEeeecCccEEEEEEcCCCC
Q 026295            8 LDKGTTSSSWNYC-----GQRLATGSTDGTLSIFDSPDPSS----------SSFTC---NLKTKVHAGAILKVVWVPPEF   69 (240)
Q Consensus         8 h~~~v~~~~~s~~-----~~~l~~~~~d~~i~iw~~~~~~~----------~~~~~---~~~~~~h~~~v~~~~~~~~~~   69 (240)
                      +...+..++|.++     +.++++++.||.+++|++.....          .....   ......+...+.+++|+|+  
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d--  195 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER--  195 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT--
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCC--
Confidence            3446777788765     46899999999999999742210          01111   1122245566889999997  


Q ss_pred             CCEEEEEecCCeEEEEEeeeccCCCcccEEEEEe------eeccccEEeEEEeecCCCcEEEEEeCCCc---EEEEEecC
Q 026295           70 GDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSF------ESTSTQVLDVQFGVSSTSLKLVAAYSDGH---VKVYELLD  140 (240)
Q Consensus        70 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~---v~iw~~~~  140 (240)
                      + +|++|+.|+.|++||+..+       +++..+      .+|...|.+++|+|  ++++|++|+.|++   |++||+.+
T Consensus       196 g-~lasgs~Dg~i~iwd~~~~-------~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         196 G-LIATGFNNGTVQISELSTL-------RPLYNFESQHSMINNSNSIRSVKFSP--QGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             S-EEEEECTTSEEEEEETTTT-------EEEEEEECCC---CCCCCEEEEEECS--STTEEEEEEEETTEEEEEEEETTT
T ss_pred             C-EEEEEeCCCcEEEEeeccc-------ccccccccccccccccceEEEccccc--ccceeeeecCCCCcceeeeccccc
Confidence            6 8899999999999999765       544433      45889999999999  9999999998875   89999987


Q ss_pred             cccccceeEEeeeecccc---eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          141 PLILKNWQLQAEFQNAID---SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                            .+++..+.....   .......|...|++++|+|++.     +|++|+.|     ++|+|||+.+++
T Consensus       266 ------g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~-----~l~S~s~D-----~~v~vWd~~~g~  322 (393)
T d1sq9a_         266 ------GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-----TLCSAGWD-----GKLRFWDVKTKE  322 (393)
T ss_dssp             ------CCEEEEECBC--------CCBSBSSCEEEEEECSSSS-----EEEEEETT-----SEEEEEETTTTE
T ss_pred             ------ceeeeeeccccccccceeeeecccCceeeeccCCCCC-----eeEEECCC-----CEEEEEECCCCC
Confidence                  344444331111   0111112333445999999987     99999999     999999998764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.4e-24  Score=163.86  Aligned_cols=167  Identities=16%  Similarity=0.199  Sum_probs=132.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeC--CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCe
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGST--DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGS   81 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~--d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~   81 (240)
                      +..|.+.|.+++|++++++|++++.  ++.+++|+..     +.+++..+.+|...|.+++|+|.  +. ++++++.|+.
T Consensus       111 ~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~--~~~~~~~~~~d~~  183 (325)
T d1pgua1         111 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-----SGNSLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGS  183 (325)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-----TCCEEEECCSCSSCEEEEEECSS--SSCEEEEEETTTE
T ss_pred             cccccCcEEEEEECCCCCccceeeccccceEEEEeec-----ccccceeeeeccccccccccccc--ccceEEEeecccc
Confidence            3457789999999999999888764  6789999998     55788888999999999999998  65 4778999999


Q ss_pred             EEEEEeeeccCCCcccEEEEE---eeeccccEEeEEEeecCC-CcEEEEEeCCCcEEEEEecCcccccceeEEeeeeccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKS---FESTSTQVLDVQFGVSST-SLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAI  157 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~-~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      +++||....       +....   ...+...|.+++|+|  + +.+|++++.|+.|++||+++      .+.+..+..|.
T Consensus       184 v~~~d~~~~-------~~~~~~~~~~~~~~~v~~v~~~p--d~~~~l~s~~~d~~i~iwd~~~------~~~~~~l~~~~  248 (325)
T d1pgua1         184 VVFYQGPPF-------KFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKS------GEFLKYIEDDQ  248 (325)
T ss_dssp             EEEEETTTB-------EEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTT------CCEEEECCBTT
T ss_pred             ccccccccc-------ccceecccccCCCCccEEeeecc--ccceeccccccccceeeeeecc------ccccccccccc
Confidence            999998654       33333   345678899999998  5 57899999999999999987      56777777776


Q ss_pred             ceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          158 DSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       158 ~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      ..+.      ..+.++.| |++.     +|++++.|     +.|+|||+++++
T Consensus       249 ~~v~------~~~~s~~~-~dg~-----~l~s~s~D-----~~i~iwd~~~~~  284 (325)
T d1pgua1         249 EPVQ------GGIFALSW-LDSQ-----KFATVGAD-----ATIRVWDVTTSK  284 (325)
T ss_dssp             BCCC------SCEEEEEE-SSSS-----EEEEEETT-----SEEEEEETTTTE
T ss_pred             cccc------cceeeeec-cCCC-----EEEEEeCC-----CeEEEEECCCCC
Confidence            6554      11123334 4444     89999999     999999998754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4.4e-24  Score=164.36  Aligned_cols=167  Identities=13%  Similarity=0.177  Sum_probs=129.4

Q ss_pred             hhcccccceEEEEECCCCCE-EEEEeCCCcEEEEeCCCCCCCcEEEEeE---eeecCccEEEEEEcCCCCCCEEEEEecC
Q 026295            4 AVATLDKGTTSSSWNYCGQR-LATGSTDGTLSIFDSPDPSSSSFTCNLK---TKVHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~-l~~~~~d~~i~iw~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      .+..|...|.+++|+|++++ +++++.|+.|++|+..     ..+....   ...|...|.+++|+|+ .+.+|++++.|
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~-----~~~~~~~~~~~~~~~~~v~~v~~~pd-~~~~l~s~~~d  227 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGP-----PFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSD  227 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETT-----TBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETT
T ss_pred             eeeecccccccccccccccceEEEeeccccccccccc-----ccccceecccccCCCCccEEeeeccc-cceeccccccc
Confidence            46779999999999999864 7789999999999987     3343333   3467788999999996 26889999999


Q ss_pred             CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeec-CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccc
Q 026295           80 GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVS-STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAID  158 (240)
Q Consensus        80 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +.|++||++++       +.+..+..|...+..+.|++. .++.+|++++.|+.|+|||+++      .+++..+..+..
T Consensus       228 ~~i~iwd~~~~-------~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~------~~~~~~~~~~~~  294 (325)
T d1pgua1         228 RKISCFDGKSG-------EFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT------SKCVQKWTLDKQ  294 (325)
T ss_dssp             CCEEEEETTTC-------CEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT------TEEEEEEECCTT
T ss_pred             cceeeeeeccc-------cccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC------CCEEEEEEecCC
Confidence            99999999776       788889888888877777621 2788999999999999999987      566666655433


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                      .+.      +...++.|.++.      +|++++.|     +.|+|||+
T Consensus       295 ~~~------~~~~~~~~~~~~------~l~s~s~d-----g~i~vwdl  325 (325)
T d1pgua1         295 QLG------NQQVGVVATGNG------RIISLSLD-----GTLNFYEL  325 (325)
T ss_dssp             CGG------GCEEEEEEEETT------EEEEEETT-----SCEEEEET
T ss_pred             ccc------CeEEEEEECCCC------EEEEEECC-----CEEEEEEC
Confidence            221      111134455544      68899998     99999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.92  E-value=1.8e-23  Score=158.55  Aligned_cols=162  Identities=17%  Similarity=0.225  Sum_probs=122.8

Q ss_pred             ccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295            9 DKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus         9 ~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ...+.+++|+|++++|++|+.|+.|++||+...   .... .....|...|.+++|+|+  +.++++++.|+.|++||+.
T Consensus       136 ~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~---~~~~-~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~~~~~  209 (299)
T d1nr0a2         136 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA---SVSE-VKTIVHPAEITSVAFSNN--GAFLVATDQSRKVIPYSVA  209 (299)
T ss_dssp             SSCEEEEEECTTSCEEEEEETTSEEEEEEEETT---EEEE-EEEEECSSCEEEEEECTT--SSEEEEEETTSCEEEEEGG
T ss_pred             ccccccccccccccccccccccccccccccccc---cccc-cccccccccccccccccc--ccccccccccccccccccc
Confidence            346789999999999999999999999999733   2222 233468899999999999  9999999999999999987


Q ss_pred             eccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecc-cceeecccccc
Q 026295           89 VEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNA-IDSVTMFRKAS  167 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~  167 (240)
                      .+.    .......+..|...|.+++|+|  ++.+|++++.||.|++||+++...    ........+ ...+       
T Consensus       210 ~~~----~~~~~~~~~~h~~~v~~l~~s~--~~~~l~sgs~dg~i~iwd~~~~~~----~~~~~~~~~~~~~v-------  272 (299)
T d1nr0a2         210 NNF----ELAHTNSWTFHTAKVACVSWSP--DNVRLATGSLDNSVIVWNMNKPSD----HPIIIKGAHAMSSV-------  272 (299)
T ss_dssp             GTT----EESCCCCCCCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCTTS----CCEEETTSSTTSCE-------
T ss_pred             ccc----cccccccccccccccccccccc--cccceEEEcCCCEEEEEECCCCCc----ceEEEecCCCCCcE-------
Confidence            651    1122344566889999999999  999999999999999999986321    111111122 1222       


Q ss_pred             ceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEee
Q 026295          168 CISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFD  207 (240)
Q Consensus       168 ~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~  207 (240)
                         .++.|.+..      +|++|+.|     +.|+|||+.
T Consensus       273 ---~~~~~~~~~------~l~s~s~D-----~~i~iWdl~  298 (299)
T d1nr0a2         273 ---NSVIWLNET------TIVSAGQD-----SNIKFWNVP  298 (299)
T ss_dssp             ---EEEEEEETT------EEEEEETT-----SCEEEEECC
T ss_pred             ---EEEEECCCC------EEEEEeCC-----CEEEEEecc
Confidence               266665543      79999988     999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.1e-23  Score=157.85  Aligned_cols=199  Identities=12%  Similarity=0.032  Sum_probs=134.3

Q ss_pred             chhcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeE
Q 026295            3 KAVATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSL   82 (240)
Q Consensus         3 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v   82 (240)
                      +-++.|++.|++|+|+|++++||+|+.||+|+|||+....  ....+....+|.++|.+++|+|+ .+.+|++|+.|+.|
T Consensus         5 ~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~--~~~~~~~~~~h~~~V~~v~f~~~-~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--KNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEI   81 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--TEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCE
T ss_pred             EcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC--cceEEEEecCCCCCEEEEEEeCC-CCCEEEEcccccce
Confidence            3467899999999999999999999999999999986432  22233344469999999999986 24589999999999


Q ss_pred             EEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      ++|++...       ........ +........+.+  +...+++++.++++++||++......  ........+.... 
T Consensus        82 ~~w~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~wd~~~~~~~~--~~~~~~~~~~~~~-  149 (342)
T d1yfqa_          82 LKVDLIGS-------PSFQALTNNEANLGICRICKY--GDDKLIAASWDGLIEVIDPRNYGDGV--IAVKNLNSNNTKV-  149 (342)
T ss_dssp             EEECSSSS-------SSEEECBSCCCCSCEEEEEEE--TTTEEEEEETTSEEEEECHHHHTTBC--EEEEESCSSSSSS-
T ss_pred             eeeecccc-------ccccccccccccccccccccc--ccccccccccccccceeeccccccce--eeecccccccccc-
Confidence            99999765       22333332 223334455566  77889999999999999997642221  1121111111110 


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                             ......+.+...     .+++++.|     +.|++|++.............    .+...+.+..+.|.
T Consensus       150 -------~~~~~~~~~~~~-----~~~~~~~d-----~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  204 (342)
T d1yfqa_         150 -------KNKIFTMDTNSS-----RLIVGMNN-----SQVQWFRLPLCEDDNGTIEES----GLKYQIRDVALLPK  204 (342)
T ss_dssp             -------CCCEEEEEECSS-----EEEEEEST-----TEEEEEESSCCTTCCCEEEEC----SCSSCEEEEEECSG
T ss_pred             -------eeeeeeeeccCC-----ceeeecCC-----CcEEEEecccCcccceeeeec----ccccceeeeEeecC
Confidence                   111456667666     79999998     999999998765544332222    23335555555543

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=6.4e-22  Score=149.08  Aligned_cols=153  Identities=14%  Similarity=0.244  Sum_probs=121.8

Q ss_pred             EEEECCCCCEEEEEeCCC-cEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeecc
Q 026295           14 SSSWNYCGQRLATGSTDG-TLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVED   91 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~-~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~   91 (240)
                      ..+++++++.+++++.++ .+++|++.     .......+. .|...+.+++|+|+  +.+|++++.|+.|++||+... 
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~g~~dg~i~i~d~~~~-  194 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLS-----DLEVSFDLKTPLRAKPSYISISPS--ETYIAAGDVMGKILLYDLQSR-  194 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETT-----EEEEEEECSSCCSSCEEEEEECTT--SSEEEEEETTSCEEEEETTTT-
T ss_pred             eeeeeccCcceeeeccccceeeeeecc-----ccceeeeeeeccCCceeEEEeccC--ccccccccccccccceeeccc-
Confidence            456778888888888775 79999997     444444443 57788999999999  999999999999999999765 


Q ss_pred             CCCcccEEE-EEeeeccccEEeEEEeec--------CCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           92 AQPLQWKLC-KSFESTSTQVLDVQFGVS--------STSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        92 ~~~~~~~~~-~~~~~~~~~v~~~~~~~~--------~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                            ... ..+..|...|.+++|+|.        .++.+|++|+.|++|++||++.+     .+....+..|...+. 
T Consensus       195 ------~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~-----~~~~~~~~~h~~~V~-  262 (287)
T d1pgua2         195 ------EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP-----MKIIKALNAHKDGVN-  262 (287)
T ss_dssp             ------EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT-----TCCEEETTSSTTCEE-
T ss_pred             ------ccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC-----CeEEEEeCCCCCCeE-
Confidence                  433 345678899999999873        24568999999999999998764     344555566776666 


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                               +++|+|++      .|++++.|     +.|++|++
T Consensus       263 ---------~v~~~~~~------~l~s~g~D-----~~v~iW~i  286 (287)
T d1pgua2         263 ---------NLLWETPS------TLVSSGAD-----ACIKRWNV  286 (287)
T ss_dssp             ---------EEEEEETT------EEEEEETT-----SCEEEEEE
T ss_pred             ---------EEEECCCC------EEEEEECC-----CeEEEEEE
Confidence                     99999986      58999998     99999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=1.2e-21  Score=150.67  Aligned_cols=170  Identities=15%  Similarity=0.231  Sum_probs=133.7

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCc
Q 026295           16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPL   95 (240)
Q Consensus        16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   95 (240)
                      .+.+++++++++..|+.|++||+.     +.+.+....++...+.++.|+|.  +.++++++.|+.|++||+..+     
T Consensus       166 ~~~~~~~~~~~~~~d~~i~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~i~d~~~~-----  233 (355)
T d1nexb2         166 TVSGHGNIVVSGSYDNTLIVWDVA-----QMKCLYILSGHTDRIYSTIYDHE--RKRCISASMDTTIRIWDLENG-----  233 (355)
T ss_dssp             EEEEETTEEEEEETTSCEEEEETT-----TTEEEEEECCCSSCEEEEEEETT--TTEEEEEETTSCEEEEETTTC-----
T ss_pred             ccccccceeeeecccceeeeeecc-----cccceeeeecccccccccccccc--ceeeecccccceEEeeecccc-----
Confidence            455678999999999999999998     55777888888899999999999  999999999999999999876     


Q ss_pred             ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEE
Q 026295           96 QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISW  175 (240)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~  175 (240)
                        ..+..+.+|...|.+++|+    +.+|++++.||+|++||+++.      ..  .+..|...+.         ....+
T Consensus       234 --~~~~~~~~h~~~v~~~~~~----~~~l~~~~~dg~i~iwd~~~~------~~--~~~~~~~~~~---------~~~~~  290 (355)
T d1nexb2         234 --ELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDY------SR--KFSYHHTNLS---------AITTF  290 (355)
T ss_dssp             --CEEEEECCCSSCCCEEEEC----SSEEEEECTTSEEEEEETTTC------CE--EEEEECTTCC---------CCCEE
T ss_pred             --ccccccccccccccccccc----cceeeeeeccccccccccccc------ce--ecccccCCce---------EEEEE
Confidence              7888899999999999884    468999999999999999862      22  2333333333         03346


Q ss_pred             eCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          176 NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       176 ~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                      ++++.     +|+ ++.|     +.|+|||+++++....      ...+|.++|++|+|+|+
T Consensus       291 ~~~~~-----~l~-~g~d-----~~i~vwd~~tg~~~~~------~~~~~~~~V~~v~~~~~  335 (355)
T d1nexb2         291 YVSDN-----ILV-SGSE-----NQFNIYNLRSGKLVHA------NILKDADQIWSVNFKGK  335 (355)
T ss_dssp             EECSS-----EEE-EEET-----TEEEEEETTTCCBCCS------CTTTTCSEEEEEEEETT
T ss_pred             cCCCC-----EEE-EEeC-----CEEEEEECCCCCEEEE------EecCCCCCEEEEEEcCC
Confidence            66664     454 5557     9999999988654321      12358889999999986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.1e-21  Score=146.31  Aligned_cols=176  Identities=15%  Similarity=0.237  Sum_probs=132.3

Q ss_pred             EECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCc
Q 026295           16 SWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPL   95 (240)
Q Consensus        16 ~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~   95 (240)
                      .+.+....+++++.|+.|++|+..     ....+..+.+|...+..+.+  +  +.++++++.|+.|++||++..     
T Consensus       142 ~~~~~~~~~~~~~~d~~i~~~d~~-----~~~~~~~~~~~~~~~~~~~~--~--~~~l~s~~~dg~i~~~d~~~~-----  207 (342)
T d2ovrb2         142 CVQYDGRRVVSGAYDFMVKVWDPE-----TETCLHTLQGHTNRVYSLQF--D--GIHVVSGSLDTSIRVWDVETG-----  207 (342)
T ss_dssp             EEEECSSCEEEEETTSCEEEEEGG-----GTEEEEEECCCSSCEEEEEE--C--SSEEEEEETTSCEEEEETTTC-----
T ss_pred             eeccccceeeeecCCCeEEEeecc-----cceeeEEEcCcccccccccC--C--CCEEEEEeCCCeEEEeecccc-----
Confidence            344566789999999999999998     55778888888877776665  5  788999999999999999776     


Q ss_pred             ccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEE
Q 026295           96 QWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISW  175 (240)
Q Consensus        96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~  175 (240)
                        +++..+..|...+.+++++    +.+|++++.||.|++||+..      .+....+..+...       ...+.++.|
T Consensus       208 --~~~~~~~~~~~~v~~~~~~----~~~l~s~s~d~~i~iwd~~~------~~~~~~~~~~~~~-------~~~~~~~~~  268 (342)
T d2ovrb2         208 --NCIHTLTGHQSLTSGMELK----DNILVSGNADSTVKIWDIKT------GQCLQTLQGPNKH-------QSAVTCLQF  268 (342)
T ss_dssp             --CEEEEECCCCSCEEEEEEE----TTEEEEEETTSCEEEEETTT------CCEEEEECSTTSC-------SSCEEEEEE
T ss_pred             --eeeeEecccccceeEEecC----CCEEEEEcCCCEEEEEeccc------cccccccccccee-------eeceeeccc
Confidence              7888888898889887774    45899999999999999986      3444444332211       111225555


Q ss_pred             eCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          176 NPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       176 ~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ++  .     ++++|+.|     |.|+|||+++++....+..  ....+|...|++++|+|++
T Consensus       269 ~~--~-----~~~s~s~D-----g~i~iwd~~tg~~i~~~~~--~~~~~~~~~v~~v~~s~~~  317 (342)
T d2ovrb2         269 NK--N-----FVITSSDD-----GTVKLWDLKTGEFIRNLVT--LESGGSGGVVWRIRASNTK  317 (342)
T ss_dssp             CS--S-----EEEEEETT-----SEEEEEETTTCCEEEEEEE--CTTGGGTCEEEEEEECSSE
T ss_pred             CC--C-----eeEEEcCC-----CEEEEEECCCCCEEEEEec--ccCCCCCCCEEEEEECCCC
Confidence            54  3     79999998     9999999988754322211  1233578899999999985

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=3.4e-21  Score=148.98  Aligned_cols=177  Identities=12%  Similarity=0.035  Sum_probs=133.6

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCC--eEEEEEeeec
Q 026295           14 SSSWNY-CGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDG--SLLLWEEIVE   90 (240)
Q Consensus        14 ~~~~s~-~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~   90 (240)
                      .-.||| ||+++|+++. |.|++|++..     ...+. + +|...|.+++|+|+  |+.|++++.+.  .|++||...+
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~-----~~~~~-~-~~~~~v~~~~~spD--g~~l~~~~~~~g~~v~v~d~~~~   76 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSG-----TYVLK-V-PEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTG   76 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTS-----SBEEE-C-SCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTC
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCC-----CcEEE-c-cCCCCEEEEEECCC--CCEEEEEEcCCCCEEEEEECCCC
Confidence            467999 9999999876 7999999973     23333 3 68999999999999  99888776553  7999999764


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                              ....+..+...+..++|+|  ++.+|++++.++.+++|+..+      .+....+..+...+.         
T Consensus        77 --------~~~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~---------  131 (360)
T d1k32a3          77 --------KAEKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLET------GKPTVIERSREAMIT---------  131 (360)
T ss_dssp             --------CEEECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTT------CCEEEEEECSSSCCC---------
T ss_pred             --------cEEEeeCCCceEEeeeecc--cccccceeccccccccccccc------cceeeeeeccccccc---------
Confidence                    3456677889999999999  999999999999999999987      455555555555555         


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCC-----CCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDT-----PQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~-----~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       +++|+|++.     +|+.+..++.     ...+.+++|+..++...     .+.   .|...+..++|+||+.
T Consensus       132 -~~~~spdg~-----~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-----~~~---~~~~~~~~~~~spdg~  191 (360)
T d1k32a3         132 -DFTISDNSR-----FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-----AAT---TENSHDYAPAFDADSK  191 (360)
T ss_dssp             -CEEECTTSC-----EEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-----ECS---CSSSBEEEEEECTTSC
T ss_pred             -chhhcccee-----eeeeeccccccceeeccccceeeeccccCcee-----eec---ccccccccccccCCCC
Confidence             899999997     7776543311     01167899998764321     111   3555889999999974

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.85  E-value=6.5e-21  Score=147.35  Aligned_cols=158  Identities=8%  Similarity=-0.050  Sum_probs=126.3

Q ss_pred             ccccceEEEEECCCCCEEEEEeCCC--cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGSTDG--TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~~d~--~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .|...|.+++|+|+|++|++++.+.  .|++||....     + ...+..|...|..++|+|+  +++|++++.++.+++
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~-----~-~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~  111 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG-----K-AEKFEENLGNVFAMGVDRN--GKFAVVANDRFEIMT  111 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC-----C-EEECCCCCCSEEEEEECTT--SSEEEEEETTSEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC-----c-EEEeeCCCceEEeeeeccc--ccccceecccccccc
Confidence            5889999999999999998877553  7999999832     2 3456678999999999999  999999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEe----------CCCcEEEEEecCcccccceeEEeeee
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAY----------SDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~----------~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      |++...       +....+..+...+.+++|+|  +|++|+.+.          .++.+++|++..      .+.. .+.
T Consensus       112 ~~~~~~-------~~~~~~~~~~~~~~~~~~sp--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~------~~~~-~~~  175 (360)
T d1k32a3         112 VDLETG-------KPTVIERSREAMITDFTISD--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEG------RKIF-AAT  175 (360)
T ss_dssp             EETTTC-------CEEEEEECSSSCCCCEEECT--TSCEEEEEEEECSSTTCSCCEEEEEEEETTT------TEEE-ECS
T ss_pred             cccccc-------ceeeeeecccccccchhhcc--ceeeeeeeccccccceeeccccceeeecccc------Ccee-eec
Confidence            999776       67777788888899999999  999888654          345688999876      2322 222


Q ss_pred             cccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          155 NAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       155 ~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .+...+.          .+.|+|++.     .|++++.+     +.+++|+...
T Consensus       176 ~~~~~~~----------~~~~spdg~-----~l~~~s~~-----~~~~~~d~~~  209 (360)
T d1k32a3         176 TENSHDY----------APAFDADSK-----NLYYLSYR-----SLDPSPDRVV  209 (360)
T ss_dssp             CSSSBEE----------EEEECTTSC-----EEEEEESC-----CCCCEECSSS
T ss_pred             ccccccc----------cccccCCCC-----EEEEEeCC-----CceEcccccc
Confidence            2333333          788999987     89999988     9999998654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.5e-19  Score=134.59  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=126.8

Q ss_pred             ccccceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee-cCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            7 TLDKGTTSSSWNYCG-QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV-HAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~-~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      .|.+.|.+++|+|++ .+|++|+.|+.|++|++....     ....... +........+.+.  ...+++++.|+.+++
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  126 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP-----SFQALTNNEANLGICRICKYG--DDKLIAASWDGLIEV  126 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS-----SEEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccc-----ccccccccccccccccccccc--cccccccccccccce
Confidence            589999999999864 689999999999999997432     2222222 2333344455566  788999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeec--cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE----------ee
Q 026295           85 WEEIVEDAQPLQWKLCKSFEST--STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ----------AE  152 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~----------~~  152 (240)
                      ||++....   ..........+  ........+.+  .+..+++++.|+.|++|+++...........          ..
T Consensus       127 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (342)
T d1yfqa_         127 IDPRNYGD---GVIAVKNLNSNNTKVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL  201 (342)
T ss_dssp             ECHHHHTT---BCEEEEESCSSSSSSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred             eecccccc---ceeeecccccccccceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEe
Confidence            99875421   11222222222  22334556666  7888999999999999998754322111100          00


Q ss_pred             eecc---------ccee--e------------------------ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCC
Q 026295          153 FQNA---------IDSV--T------------------------MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQ  197 (240)
Q Consensus       153 ~~~~---------~~~v--~------------------------~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~  197 (240)
                      ....         ...+  .                        ....+...+++++|+|++.     +|++|+.|    
T Consensus       202 ~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~-----~lasg~~D----  272 (342)
T d1yfqa_         202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-----FLYTAGSD----  272 (342)
T ss_dssp             CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-----CEEEEETT----
T ss_pred             ecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCcc-----EEEEECCC----
Confidence            0000         0000  0                        0011222457899999987     89999999    


Q ss_pred             CCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          198 LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       198 ~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       |.|+|||+.+.+.    ...+.  ..|  .+..++|+|++.
T Consensus       273 -g~v~vWD~~~~~~----l~~~~--~~~--~~~~~~~s~~~~  305 (342)
T d1yfqa_         273 -GIISCWNLQTRKK----IKNFA--KFN--EDSVVKIACSDN  305 (342)
T ss_dssp             -SCEEEEETTTTEE----EEECC--CCS--SSEEEEEEECSS
T ss_pred             -CEEEEEECCCCcE----EEEec--CCC--CCEEEEEEeCCC
Confidence             9999999987542    22222  123  455667777653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.4e-18  Score=127.59  Aligned_cols=157  Identities=14%  Similarity=0.232  Sum_probs=123.0

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLL   84 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~i   84 (240)
                      +..|...|.++.+.  ...+++++.|+.|++||..     +.+.+..+.++...+..+.++    +.++++++.|+.|++
T Consensus       134 ~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~-----~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i  202 (293)
T d1p22a2         134 LVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTS-----TCEFVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRL  202 (293)
T ss_dssp             ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETT-----TCCEEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEE
T ss_pred             ccccccccccceec--ccccccccCCCceeeecCC-----CCcEEEEEcccccccccccCC----CCeEEEecCCCEEEE
Confidence            34566777776654  5678899999999999998     557788888998889888873    467999999999999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccc---cceeEEeeeecccceee
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLIL---KNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~~~v~  161 (240)
                      ||++..       ..+..+..+...+..+  ++  ++.+|++++.||.|++||+......   ........+..|...|.
T Consensus       203 ~d~~~~-------~~~~~~~~~~~~v~~~--~~--~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~  271 (293)
T d1p22a2         203 WDIECG-------ACLRVLEGHEELVRCI--RF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF  271 (293)
T ss_dssp             EETTTC-------CEEEEECCCSSCEEEE--EC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCC
T ss_pred             Eecccc-------eeeeeecccceeeeec--cc--cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEE
Confidence            999776       7777888777777654  44  7788999999999999998753221   12345566677776666


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEE
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWE  205 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~  205 (240)
                                +++|++.       +|++|+.|     ++|+|||
T Consensus       272 ----------~v~~d~~-------~l~s~s~D-----g~i~iWD  293 (293)
T d1p22a2         272 ----------RLQFDEF-------QIVSSSHD-----DTILIWD  293 (293)
T ss_dssp             ----------CEEECSS-------CEEECCSS-----SEEEEEC
T ss_pred             ----------EEEEcCC-------EEEEEecC-----CEEEEeC
Confidence                      8998643       69999998     9999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.77  E-value=8.5e-18  Score=133.49  Aligned_cols=217  Identities=10%  Similarity=-0.027  Sum_probs=129.3

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEE---eEeeecCccEEEEEEcCCCCCCEEEE-EecCC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCN---LKTKVHAGAILKVVWVPPEFGDAVAC-ICSDG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d~   80 (240)
                      +..| ..+..++|||||++|++++.|++|++||+...   .....   ....+|.+.+.++.|+|+  |+++++ +..++
T Consensus        58 l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~---~~~~~~~i~~~~~~~~~~~s~~~spD--G~~l~v~~~~~~  131 (426)
T d1hzua2          58 IDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAK---EPTKVAEIKIGIEARSVESSKFKGYE--DRYTIAGAYWPP  131 (426)
T ss_dssp             EECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSS---SCEEEEEEECCSEEEEEEECCSTTCT--TTEEEEEEEESS
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCC---ceeEEEEEeCCCCCcceEEeeeecCC--CCEEEEeecCCC
Confidence            4444 46899999999999999999999999999743   22222   223356677788889999  987654 45789


Q ss_pred             eEEEEEeeeccCC-----------------CcccEE-------------------------------EEEeeeccccEEe
Q 026295           81 SLLLWEEIVEDAQ-----------------PLQWKL-------------------------------CKSFESTSTQVLD  112 (240)
Q Consensus        81 ~v~iwd~~~~~~~-----------------~~~~~~-------------------------------~~~~~~~~~~v~~  112 (240)
                      .+++||.......                 ......                               ......+...+..
T Consensus       132 ~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  211 (426)
T d1hzua2         132 QFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLAD  211 (426)
T ss_dssp             EEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEE
T ss_pred             eEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEe
Confidence            9999996543100                 000000                               0001123345567


Q ss_pred             EEEeecCCCcEEEEEe-CCCcEEEEEecCccccccee-------------------EEee-eeccccee-----------
Q 026295          113 VQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQ-------------------LQAE-FQNAIDSV-----------  160 (240)
Q Consensus       113 ~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~-------------------~~~~-~~~~~~~v-----------  160 (240)
                      +.|+|  ++++++++. .+..+.+++..+........                   .... .......+           
T Consensus       212 ~~~~~--~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~  289 (426)
T d1hzua2         212 GGWDS--SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP  289 (426)
T ss_dssp             EEECT--TSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCT
T ss_pred             eeECC--CCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccc
Confidence            88888  888777665 44567777765421110000                   0000 00000000           


Q ss_pred             -------eccccccceeeeEEEeCCCCCCCCceEEE-------EecCCCCCCCeEEEEEeecCCCCcceeE--eeecCCC
Q 026295          161 -------TMFRKASCISASISWNPQKGENQGSSFVL-------GFNSDTPQLNSSKVWEFDEAHNRWLPVA--ELALPED  224 (240)
Q Consensus       161 -------~~~~~~~~~~~~v~~~p~~~~~~~~~l~~-------~~~dd~~~~~~i~iw~~~~~~~~~~~~~--~~~~~~~  224 (240)
                             .....+...+..++|+|++.     +|++       ++.+     ++|+|||+.+.+.......  ....+..
T Consensus       290 ~~~~~~~~~l~g~~~~v~~v~~sPdg~-----~l~v~~~~~~s~~~~-----~tv~vwd~~t~~~~~~~~~~~~~~~~~~  359 (426)
T d1hzua2         290 QYAWKKVAELQGQGGGSLFIKTHPKSS-----HLYVDTTFNPDARIS-----QSVAVFDLKNLDAKYQVLPIAEWADLGE  359 (426)
T ss_dssp             TTBTSEEEEEECSSSCCCCEECCTTCS-----EEEECCTTCSSHHHH-----TCEEEEETTCTTSCCEEECHHHHHCCCS
T ss_pred             cccceEeEEEecCCCceeEEEcCCCCc-----eEEEeecCCCCcccC-----CEEEEEECCCCCcCeEEeccchhcccCC
Confidence                   00111233456899999997     7774       3445     8999999988765433211  1112334


Q ss_pred             CCCceEEEEEecCCC
Q 026295          225 RSDEVYAVAWALNIG  239 (240)
Q Consensus       225 h~~~v~~v~~sp~~~  239 (240)
                      |...|.+++|||||.
T Consensus       360 ~~~rv~~~~fSpDGk  374 (426)
T d1hzua2         360 GAKRVVQPEYNKRGD  374 (426)
T ss_dssp             SCCCEEEEEECSSSS
T ss_pred             CCccEEEEEECCCCC
Confidence            666899999999984

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=2.4e-17  Score=131.17  Aligned_cols=185  Identities=9%  Similarity=-0.001  Sum_probs=128.0

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEE
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      -++++.+.||+|.|||..     +.+++..+..+ ..+..++|+|+  |+++++++.|+.|++||+.++..  .....+.
T Consensus        33 ~~~v~~~d~g~v~v~D~~-----t~~v~~~~~~g-~~~~~v~fSpD--G~~l~~~s~dg~v~~~d~~t~~~--~~~~~i~  102 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGS-----TYEIKTVLDTG-YAVHISRLSAS--GRYLFVIGRDGKVNMIDLWMKEP--TTVAEIK  102 (432)
T ss_dssp             EEEEEETTTTEEEEEETT-----TCCEEEEEECS-SCEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC--CEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECC-----CCcEEEEEeCC-CCeeEEEECCC--CCEEEEEcCCCCEEEEEeeCCCc--eEEEEEe
Confidence            346899999999999998     77889999876 46999999999  99999999999999999876532  0111223


Q ss_pred             EeeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc-cccceeeeEEEeCCC
Q 026295          102 SFESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR-KASCISASISWNPQK  179 (240)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~v~~~p~~  179 (240)
                      ....+...+.+..|+|  +|++| ++++.+++|++||..+      .++...+..+...+.... ...-....+.++|++
T Consensus       103 ~~~~~~~~~~s~~~Sp--DG~~l~vs~~~~~~v~i~d~~t------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg  174 (432)
T d1qksa2         103 IGSEARSIETSKMEGW--EDKYAIAGAYWPPQYVIMDGET------LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR  174 (432)
T ss_dssp             CCSEEEEEEECCSTTC--TTTEEEEEEEETTEEEEEETTT------CCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred             cCCCCCCeEEecccCC--CCCEEEEEcCCCCeEEEEeCcc------ccceeeeccCCccccceeccCCCceeEEEECCCC
Confidence            3345666777778888  99875 6788899999999987      455555443322211000 000112257788887


Q ss_pred             CCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          180 GENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       180 ~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      .     .++++..++    +.|.+|+..+.+..  ....+.    +...+.+++|+||+.
T Consensus       175 ~-----~~~vs~~~~----~~i~~~d~~~~~~~--~~~~i~----~g~~~~~~~~spdg~  219 (432)
T d1qksa2         175 P-----EFIVNVKET----GKILLVDYTDLNNL--KTTEIS----AERFLHDGGLDGSHR  219 (432)
T ss_dssp             S-----EEEEEETTT----TEEEEEETTCSSEE--EEEEEE----CCSSEEEEEECTTSC
T ss_pred             C-----EEEEEEccC----CeEEEEEccCCCcc--eEEEEc----ccCccccceECCCCC
Confidence            6     555555444    99999997764422  222332    445789999999984

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.72  E-value=1.4e-16  Score=126.42  Aligned_cols=188  Identities=10%  Similarity=0.021  Sum_probs=123.0

Q ss_pred             EECCCC--CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295           16 SWNYCG--QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ   93 (240)
Q Consensus        16 ~~s~~~--~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   93 (240)
                      .++.+.  -++++.+.||.|+|||+.     +++.+.++..|. .+..++|+|+  |+++++++.|+.|++||+.++.. 
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~-----t~~~~~~l~~g~-~~~~vafSPD--Gk~l~~~~~d~~v~vwd~~t~~~-   95 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGD-----SKKIVKVIDTGY-AVHISRMSAS--GRYLLVIGRDARIDMIDLWAKEP-   95 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETT-----TCSEEEEEECCS-SEEEEEECTT--SCEEEEEETTSEEEEEETTSSSC-
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECC-----CCcEEEEEeCCC-CeeEEEECCC--CCEEEEEeCCCCEEEEEccCCce-
Confidence            355554  356888899999999998     778888898764 5899999999  99999999999999999976532 


Q ss_pred             CcccEEEEEe---eeccccEEeEEEeecCCCcEEEE-EeCCCcEEEEEecCcccccceeEEeeeecccceeeccc-cccc
Q 026295           94 PLQWKLCKSF---ESTSTQVLDVQFGVSSTSLKLVA-AYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR-KASC  168 (240)
Q Consensus        94 ~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~-~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~  168 (240)
                          .....+   .++...+.+++|+|  +|+++++ +..++.+++||...      ..+...+..+...+.... ...-
T Consensus        96 ----~~~~~i~~~~~~~~~~~s~~~sp--DG~~l~v~~~~~~~v~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~  163 (426)
T d1hzua2          96 ----TKVAEIKIGIEARSVESSKFKGY--EDRYTIAGAYWPPQFAIMDGET------LEPKQIVSTRGMTVDTQTYHPEP  163 (426)
T ss_dssp             ----EEEEEEECCSEEEEEEECCSTTC--TTTEEEEEEEESSEEEEEETTT------CCEEEEEECCEECSSSCCEESCC
T ss_pred             ----eEEEEEeCCCCCcceEEeeeecC--CCCEEEEeecCCCeEEEEcCCc------cceeEEeeccCCCccceeecCCC
Confidence                233333   35666777888888  9998654 55889999999987      455555544433222000 0000


Q ss_pred             eeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          169 ISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       169 ~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ....+..++++.     .++....+.    +.+.+++.......  ....+    ++...+.+++|+|++.
T Consensus       164 ~~~~i~~s~d~~-----~~~~~~~~~----~~i~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~g~  219 (426)
T d1hzua2         164 RVAAIIASHEHP-----EFIVNVKET----GKVLLVNYKDIDNL--TVTSI----GAAPFLADGGWDSSHR  219 (426)
T ss_dssp             CEEEEEECSSSS-----EEEEEETTT----TEEEEEECSSSSSC--EEEEE----ECCSSEEEEEECTTSC
T ss_pred             ceeEEEECCCCC-----EEEEecCCC----CeEEEEEeccccce--eeEEe----ccCCccEeeeECCCCc
Confidence            111344555554     444444432    55555555443322  12222    3556899999999875

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.69  E-value=2.1e-15  Score=119.79  Aligned_cols=169  Identities=11%  Similarity=-0.016  Sum_probs=115.9

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-EEEecCCeEE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-ACICSDGSLL   83 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~   83 (240)
                      +..+ ..+..++|||||++|++++.|++|++||+..........+.....|.+.+.+..|+|+  |+++ +++..++.|+
T Consensus        58 ~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD--G~~l~vs~~~~~~v~  134 (432)
T d1qksa2          58 LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE--DKYAIAGAYWPPQYV  134 (432)
T ss_dssp             EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT--TTEEEEEEEETTEEE
T ss_pred             EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC--CCEEEEEcCCCCeEE
Confidence            4444 4699999999999999999999999999874321111223333456677777788889  9875 6788899999


Q ss_pred             EEEeeeccCCCcccEEEEEeeec-----------cccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecCcccccceeEEe
Q 026295           84 LWEEIVEDAQPLQWKLCKSFEST-----------STQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLDPLILKNWQLQA  151 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~~~~~~  151 (240)
                      +||...+       +++..+..+           ......+.++|  ++..+ ++...++.|.+|+..+...    ..+.
T Consensus       135 i~d~~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg~~~~vs~~~~~~i~~~d~~~~~~----~~~~  201 (432)
T d1qksa2         135 IMDGETL-------EPKKIQSTRGMTYDEQEYHPEPRVAAILASH--YRPEFIVNVKETGKILLVDYTDLNN----LKTT  201 (432)
T ss_dssp             EEETTTC-------CEEEEEECCEECTTTCCEESCCCEEEEEECS--SSSEEEEEETTTTEEEEEETTCSSE----EEEE
T ss_pred             EEeCccc-------cceeeeccCCccccceeccCCCceeEEEECC--CCCEEEEEEccCCeEEEEEccCCCc----ceEE
Confidence            9998766       555555432           34455678887  77654 5566778999999876311    1112


Q ss_pred             eeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          152 EFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       152 ~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                      .+.. .....          .+.|+|++.     ++++++.++    +.+.+++..+.
T Consensus       202 ~i~~-g~~~~----------~~~~spdg~-----~~~va~~~~----~~v~v~d~~~~  239 (432)
T d1qksa2         202 EISA-ERFLH----------DGGLDGSHR-----YFITAANAR----NKLVVIDTKEG  239 (432)
T ss_dssp             EEEC-CSSEE----------EEEECTTSC-----EEEEEEGGG----TEEEEEETTTT
T ss_pred             EEcc-cCccc----------cceECCCCC-----EEEEecccc----ceEEEeecccc
Confidence            2221 11122          789999997     777777654    78888887543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.1e-14  Score=110.87  Aligned_cols=123  Identities=7%  Similarity=-0.022  Sum_probs=87.9

Q ss_pred             ccccceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CCeEEE
Q 026295            7 TLDKGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DGSLLL   84 (240)
Q Consensus         7 ~h~~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~~v~i   84 (240)
                      .|.+.+..++|+|||++|++++ .|+.|++|++..... ..+..... .+...+..++|+|+  |+++++++. ++.|.+
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~-~~~~~~~~-~~~~~p~~l~~spD--g~~l~v~~~~~~~v~~  109 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-ALTFAAES-ALPGSLTHISTDHQ--GQFVFVGSYNAGNVSV  109 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-CEEEEEEE-ECSSCCSEEEECTT--SSEEEEEETTTTEEEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCC-cEEEeeec-ccCCCceEEEEcCC--CCEEeecccCCCceee
Confidence            5778899999999999885554 589999999874421 22222222 34456778999999  999888875 668999


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecC
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLD  140 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~  140 (240)
                      |+......     ........+...+.++.++|  +++++++++. +..|.+|+...
T Consensus       110 ~~~~~~~~-----~~~~~~~~~~~~~~~v~~s~--d~~~~~~~~~~~~~i~~~~~~~  159 (333)
T d1ri6a_         110 TRLEDGLP-----VGVVDVVEGLDGCHSANISP--DNRTLWVPALKQDRICLFTVSD  159 (333)
T ss_dssp             EEEETTEE-----EEEEEEECCCTTBCCCEECT--TSSEEEEEEGGGTEEEEEEECT
T ss_pred             eccccccc-----eecccccCCCccceEEEeee--cceeeeccccccceeeEEEecc
Confidence            98875421     22333344567788999999  8888777764 45688888764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=8e-15  Score=109.93  Aligned_cols=193  Identities=12%  Similarity=0.109  Sum_probs=126.4

Q ss_pred             cccceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEE
Q 026295            8 LDKGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iw   85 (240)
                      +......++|+|+|++| ++++.++.|++||+.     +.+.+..+..+. .+..+.|+++  +..++ ++..++.+.+|
T Consensus        30 ~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~-----t~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~  101 (301)
T d1l0qa2          30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-----TNNVIATVPAGS-SPQGVAVSPD--GKQVYVTNMASSTLSVI  101 (301)
T ss_dssp             CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT-----TTEEEEEEECSS-SEEEEEECTT--SSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC-----CCceeeeeeccc-cccccccccc--cccccccccccceeeec
Confidence            34567899999999987 466788999999998     667788887764 4688999998  77555 45567789999


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCcccccceeEEeeeecccc----ee
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLILKNWQLQAEFQNAID----SV  160 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~----~v  160 (240)
                      +...+       +....+..+ .....+.|+|  ++..++ ++..++.+.+|+..+..      ....+..+..    ..
T Consensus       102 ~~~~~-------~~~~~~~~~-~~~~~~~~~~--dg~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  165 (301)
T d1l0qa2         102 DTTSN-------TVAGTVKTG-KSPLGLALSP--DGKKLYVTNNGDKTVSVINTVTKA------VINTVSVGRSPKGIAV  165 (301)
T ss_dssp             ETTTT-------EEEEEEECS-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTE------EEEEEECCSSEEEEEE
T ss_pred             ccccc-------eeeeecccc-ccceEEEeec--CCCeeeeeeccccceeeeeccccc------eeeecccCCCceEEEe
Confidence            98765       666666544 5667899998  888765 45567888999987632      1111111100    00


Q ss_pred             ecccc---------------------------ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCc
Q 026295          161 TMFRK---------------------------ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRW  213 (240)
Q Consensus       161 ~~~~~---------------------------~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~  213 (240)
                      .+.+.                           .......+.|++++.     .++++..+.  ..+.|++||..+.+   
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~v~~~~~--~~~~v~v~D~~t~~---  235 (301)
T d1l0qa2         166 TPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGT-----KAYVTNVDK--YFNTVSMIDTGTNK---  235 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSS-----EEEEEEECS--SCCEEEEEETTTTE---
T ss_pred             eccccceeeecccccccccccccceeeeecccccCCcceeecccccc-----ccccccccc--eeeeeeeeecCCCe---
Confidence            00000                           011234667888876     454443320  00689999987653   


Q ss_pred             ceeEeeecCCCCCCceEEEEEecCCC
Q 026295          214 LPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       214 ~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                       ....++    +...+++++|+||+.
T Consensus       236 -~~~~~~----~~~~~~~va~spdg~  256 (301)
T d1l0qa2         236 -ITARIP----VGPDPAGIAVTPDGK  256 (301)
T ss_dssp             -EEEEEE----CCSSEEEEEECTTSS
T ss_pred             -EEEEEc----CCCCEEEEEEeCCCC
Confidence             233333    234789999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=7.2e-14  Score=106.19  Aligned_cols=182  Identities=9%  Similarity=0.048  Sum_probs=118.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEEeeeccCCCcccEEEE
Q 026295           23 RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      .+++++.|++|+||++...+  ..+.+..+ .|.+.+..|+|+|+  |++|++++ .|+.|++|++......    ....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~--~l~~~~~~-~~~~~v~~la~spD--G~~L~v~~~~d~~i~~~~i~~~~~~----~~~~   76 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEG--ALTLTQVV-DVPGQVQPMVVSPD--KRYLYVGVRPEFRVLAYRIAPDDGA----LTFA   76 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTS--CEEEEEEE-ECSSCCCCEEECTT--SSEEEEEETTTTEEEEEEECTTTCC----EEEE
T ss_pred             EEEECCCCCcEEEEEEcCCC--CeEEEEEE-cCCCCEeEEEEeCC--CCEEEEEECCCCeEEEEEEeCCCCc----EEEe
Confidence            45778899999999997432  34444444 47788999999999  99886555 5899999998754220    1222


Q ss_pred             EeeeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCC
Q 026295          102 SFESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKG  180 (240)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~  180 (240)
                      ........+..++|+|  +|++|++++. ++.|.+|+......    ........+...+.          ++.++|++.
T Consensus        77 ~~~~~~~~p~~l~~sp--Dg~~l~v~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~----------~v~~s~d~~  140 (333)
T d1ri6a_          77 AESALPGSLTHISTDH--QGQFVFVGSYNAGNVSVTRLEDGLP----VGVVDVVEGLDGCH----------SANISPDNR  140 (333)
T ss_dssp             EEEECSSCCSEEEECT--TSSEEEEEETTTTEEEEEEEETTEE----EEEEEEECCCTTBC----------CCEECTTSS
T ss_pred             eecccCCCceEEEEcC--CCCEEeecccCCCceeeeccccccc----eecccccCCCccce----------EEEeeecce
Confidence            2223445567899999  9999888875 67889998875211    11111122222233          788999987


Q ss_pred             CCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          181 ENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       181 ~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                           ++++++.++    ..|.+|+.............. .........+.++|+|++.
T Consensus       141 -----~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~-~~~~~g~~p~~i~~~~~~~  189 (333)
T d1ri6a_         141 -----TLWVPALKQ----DRICLFTVSDDGHLVAQDPAE-VTTVEGAGPRHMVFHPNEQ  189 (333)
T ss_dssp             -----EEEEEEGGG----TEEEEEEECTTSCEEEEEEEE-EECSTTCCEEEEEECTTSS
T ss_pred             -----eeecccccc----ceeeEEEeccCCcceeeecee-eeeecCCCccEEEEeccce
Confidence                 677766554    789999987654332221111 1112445678899998863

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.2e-14  Score=110.40  Aligned_cols=103  Identities=10%  Similarity=0.140  Sum_probs=79.2

Q ss_pred             CEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeec--CccEEEEEEcCCCCCCEE-EEEecCCeEEEEEeeeccCCCcccE
Q 026295           22 QRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVH--AGAILKVVWVPPEFGDAV-ACICSDGSLLLWEEIVEDAQPLQWK   98 (240)
Q Consensus        22 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~   98 (240)
                      ++|++++.|++|+|||+.     +.+.+..+..+  ...+..++|+|+  |+++ ++++.++.|.+||+.++       +
T Consensus         2 ~~~vt~~~d~~v~v~D~~-----s~~~~~~i~~~~~~~~~~~i~~spD--g~~l~v~~~~~~~v~v~D~~t~-------~   67 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTE-----KMAVDKVITIADAGPTPMVPMVAPG--GRIAYATVNKSESLVKIDLVTG-------E   67 (337)
T ss_dssp             EEEEEEETTTEEEEEETT-----TTEEEEEEECTTCTTCCCCEEECTT--SSEEEEEETTTTEEEEEETTTC-------C
T ss_pred             eEEEEEcCCCEEEEEECC-----CCeEEEEEECCCCCCCccEEEECCC--CCEEEEEECCCCeEEEEECCCC-------c
Confidence            589999999999999998     66778777643  455789999999  9877 46677899999999876       6


Q ss_pred             EEEEeeec-----cccEEeEEEeecCCCcEEEEEe------------CCCcEEEEEecC
Q 026295           99 LCKSFEST-----STQVLDVQFGVSSTSLKLVAAY------------SDGHVKVYELLD  140 (240)
Q Consensus        99 ~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~------------~dg~v~iw~~~~  140 (240)
                      .+..+..+     ...+..++|+|  ++.+++++.            .++.+.+||..+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~v~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~  124 (337)
T d1pbyb_          68 TLGRIDLSTPEERVKSLFGAALSP--DGKTLAIYESPVRLELTHFEVQPTRVALYDAET  124 (337)
T ss_dssp             EEEEEECCBTTEEEECTTCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEETTT
T ss_pred             EEEEEecCCCcccccceeeEEEcC--CCcEEEEeecCCcceeeeccccccceeeccccC
Confidence            66665543     23456789999  998887776            356677787654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.61  E-value=2.2e-14  Score=109.36  Aligned_cols=111  Identities=9%  Similarity=-0.024  Sum_probs=87.4

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEE-EEecCCeEEEEEeeeccC
Q 026295           15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVA-CICSDGSLLLWEEIVEDA   92 (240)
Q Consensus        15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~   92 (240)
                      ++|++++++|++++.+++|.|||+.     +.+.+.+++ .|...+..++|+|+  |++++ ++..++.|.+||+.++  
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~-----t~~~~~t~~~~~~~~p~~l~~spD--G~~l~v~~~~~~~v~~~d~~t~--   72 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVA-----SDTVYKSCVMPDKFGPGTAMMAPD--NRTAYVLNNHYGDIYGIDLDTC--   72 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETT-----TTEEEEEEECSSCCSSCEEEECTT--SSEEEEEETTTTEEEEEETTTT--
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECC-----CCCEEEEEEcCCCCCcceEEECCC--CCEEEEEECCCCcEEEEeCccC--
Confidence            4789999999999999999999998     668888876 35566889999999  98764 5557899999999776  


Q ss_pred             CCcccEEEEEeeec------cccEEeEEEeecCCCcEEEEEe------------CCCcEEEEEecCc
Q 026295           93 QPLQWKLCKSFEST------STQVLDVQFGVSSTSLKLVAAY------------SDGHVKVYELLDP  141 (240)
Q Consensus        93 ~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~~~~------------~dg~v~iw~~~~~  141 (240)
                           +.+..+...      ...+..++|+|  +|.++++++            .++.+.+|+..+.
T Consensus        73 -----~~~~~~~~~~~~~~~~~~~~~v~~s~--DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~  132 (346)
T d1jmxb_          73 -----KNTFHANLSSVPGEVGRSMYSFAISP--DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG  132 (346)
T ss_dssp             -----EEEEEEESCCSTTEEEECSSCEEECT--TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred             -----eeeeeecccccccccCCceEEEEEec--CCCEEEEEecCCcceeeeeccCcceEEEEecccc
Confidence                 666655432      23456789999  998887765            4677888887653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.59  E-value=1.5e-13  Score=102.77  Aligned_cols=164  Identities=10%  Similarity=0.115  Sum_probs=118.0

Q ss_pred             EEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-EEEecCCeEEEEEeeeccCCCcccEEEEE
Q 026295           24 LATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-ACICSDGSLLLWEEIVEDAQPLQWKLCKS  102 (240)
Q Consensus        24 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~~~~~~~~~~~~  102 (240)
                      .++.+.|++|.|||+.     +.+.+.++.. ...+..++|+|+  |+++ +++..++.|++||+.++       +.+..
T Consensus         5 yV~~~~~~~v~v~D~~-----t~~~~~~i~~-g~~p~~va~spd--G~~l~v~~~~~~~i~v~d~~t~-------~~~~~   69 (301)
T d1l0qa2           5 YIANSESDNISVIDVT-----SNKVTATIPV-GSNPMGAVISPD--GTKVYVANAHSNDVSIIDTATN-------NVIAT   69 (301)
T ss_dssp             EEEETTTTEEEEEETT-----TTEEEEEEEC-SSSEEEEEECTT--SSEEEEEEGGGTEEEEEETTTT-------EEEEE
T ss_pred             EEEECCCCEEEEEECC-----CCeEEEEEEC-CCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCC-------ceeee
Confidence            3567788999999998     6677877764 356789999999  9876 46667899999999776       77888


Q ss_pred             eeeccccEEeEEEeecCCCcEEE-EEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCC
Q 026295          103 FESTSTQVLDVQFGVSSTSLKLV-AAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGE  181 (240)
Q Consensus       103 ~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~  181 (240)
                      +..+ ..+..+.|++  ++..++ ++..++.+.+|+..+      .+....+..+.. ..          .+.|+|++. 
T Consensus        70 ~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~----------~~~~~~dg~-  128 (301)
T d1l0qa2          70 VPAG-SSPQGVAVSP--DGKQVYVTNMASSTLSVIDTTS------NTVAGTVKTGKS-PL----------GLALSPDGK-  128 (301)
T ss_dssp             EECS-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTT------TEEEEEEECSSS-EE----------EEEECTTSS-
T ss_pred             eecc-cccccccccc--ccccccccccccceeeeccccc------ceeeeecccccc-ce----------EEEeecCCC-
Confidence            7765 4568899988  877554 555677899999876      455555443322 22          788999987 


Q ss_pred             CCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          182 NQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       182 ~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                          .++++...+    +.+.+|+..+..    ....+.    +...+..++|+|++.
T Consensus       129 ----~~~~~~~~~----~~~~~~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~  170 (301)
T d1l0qa2         129 ----KLYVTNNGD----KTVSVINTVTKA----VINTVS----VGRSPKGIAVTPDGT  170 (301)
T ss_dssp             ----EEEEEETTT----TEEEEEETTTTE----EEEEEE----CCSSEEEEEECTTSS
T ss_pred             ----eeeeeeccc----cceeeeeccccc----eeeecc----cCCCceEEEeecccc
Confidence                555444433    899999987643    222333    223688899999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.59  E-value=3.7e-14  Score=107.70  Aligned_cols=113  Identities=16%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             cccceEEEEECCCCCEE-EEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC-----ccEEEEEEcCCCCCCEEEEEec---
Q 026295            8 LDKGTTSSSWNYCGQRL-ATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA-----GAILKVVWVPPEFGDAVACICS---   78 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l-~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~---   78 (240)
                      +...+.+++|+|||++| ++++.++.|.+||+.     +++.+..+..+.     ..+..++|+|+  +.+++++..   
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~-----t~~~~~~~~~~~~~~~~~~~~~v~~s~d--g~~l~~~~~~~~  104 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-----TGETLGRIDLSTPEERVKSLFGAALSPD--GKTLAIYESPVR  104 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-----TCCEEEEEECCBTTEEEECTTCEEECTT--SSEEEEEEEEEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECC-----CCcEEEEEecCCCcccccceeeEEEcCC--CcEEEEeecCCc
Confidence            34567899999999987 566788999999998     566666665443     23457899999  988877753   


Q ss_pred             ---------CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           79 ---------DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        79 ---------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                               +..+.+||...+       .....+.. ...+..++|+|  +|.++++++.+  +.+||..
T Consensus       105 ~~~~~~~~~~~~~~~~d~~~~-------~~~~~~~~-~~~~~~~~~s~--dg~~l~~~~~~--~~~~d~~  162 (337)
T d1pbyb_         105 LELTHFEVQPTRVALYDAETL-------SRRKAFEA-PRQITMLAWAR--DGSKLYGLGRD--LHVMDPE  162 (337)
T ss_dssp             ECSSCEEECCCEEEEEETTTT-------EEEEEEEC-CSSCCCEEECT--TSSCEEEESSS--EEEEETT
T ss_pred             ceeeeccccccceeeccccCC-------eEEEeccc-cCCceEEEEcC--CCCEEEEEcCC--cceeeee
Confidence                     467778887655       55555553 34567788887  88877777644  5566654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.46  E-value=1.1e-11  Score=94.00  Aligned_cols=89  Identities=12%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             cEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEE
Q 026295          109 QVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFV  188 (240)
Q Consensus       109 ~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~  188 (240)
                      .+..+.+++  ++.+++... ++.|.+||..+      ++....+... ..+.          +++|+|++.     +|+
T Consensus       253 ~~~~~~~~~--~~~~~~~~~-~~~v~v~d~~~------~~~~~~~~~~-~~~~----------~va~s~DG~-----~l~  307 (346)
T d1jmxb_         253 LYFTGLRSP--KDPNQIYGV-LNRLAKYDLKQ------RKLIKAANLD-HTYY----------CVAFDKKGD-----KLY  307 (346)
T ss_dssp             CEEEEEECS--SCTTEEEEE-ESEEEEEETTT------TEEEEEEECS-SCCC----------EEEECSSSS-----CEE
T ss_pred             eeEEEEEeC--CCCEEEEec-CCeEEEEECCC------CcEEEEEcCC-CCEE----------EEEEcCCCC-----EEE
Confidence            444555655  555555555 35799999877      5555554322 2233          899999998     899


Q ss_pred             EEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEE
Q 026295          189 LGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYA  231 (240)
Q Consensus       189 ~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~  231 (240)
                      +++.|     +.|+|||..+.+    ....+..+.++......
T Consensus       308 v~~~d-----~~v~v~D~~t~~----~i~~i~~p~g~~~~~~~  341 (346)
T d1jmxb_         308 LGGTF-----NDLAVFNPDTLE----KVKNIKLPGGDMSTTTP  341 (346)
T ss_dssp             EESBS-----SEEEEEETTTTE----EEEEEECSSSCCBTCCC
T ss_pred             EEeCC-----CcEEEEECccCC----EEEEEECCCCCcceeEE
Confidence            99988     999999998744    44455655555444333

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.42  E-value=3.2e-11  Score=92.95  Aligned_cols=160  Identities=10%  Similarity=-0.077  Sum_probs=110.7

Q ss_pred             cccccceEEEEECCCCCEEEEEe-----CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe---
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGS-----TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC---   77 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---   77 (240)
                      ..+++.+..++++|+|++++...     ..+.|.+||..     +++.+..+..+..  ..+.|+|+  |++++++.   
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~-----tg~~~~~~~~~~~--~~~a~SpD--G~~l~va~~~~   87 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAG-----SGSILGHVNGGFL--PNPVAAHS--GSEFALASTSF   87 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECC-----CCCEEEEEeCCCC--ccEEEcCC--CCEEEEEeecC
Confidence            35777899999999999887652     33568889887     6677777776543  37999999  99988875   


Q ss_pred             -------cCCeEEEEEeeeccCCCcccEEEEEeeeccccE-------EeEEEeecCCCcEEEEE--eCCCcEEEEEecCc
Q 026295           78 -------SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQV-------LDVQFGVSSTSLKLVAA--YSDGHVKVYELLDP  141 (240)
Q Consensus        78 -------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~~~--~~dg~v~iw~~~~~  141 (240)
                             .++.|.+||..++       +.+..+..+....       ..+.|+|  ++..++..  ..++.+.+|+... 
T Consensus        88 ~~~~~~~~~~~v~v~D~~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~~~~~~~~~~-  157 (373)
T d2madh_          88 SRIAKGKRTDYVEVFDPVTF-------LPIADIELPDAPRFDVGPYSWMNANTP--NNADLLFFQFAAGPAVGLVVQGG-  157 (373)
T ss_pred             CcccccccceEEEEEECCCC-------cEEEEEecCCcceeEeccCCCcEEEEe--CCCcEEEEEEcCCCceEEeeccC-
Confidence                   3578999999876       6666665443322       4567888  77655444  3456777887765 


Q ss_pred             ccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCC
Q 026295          142 LILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNR  212 (240)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~  212 (240)
                           .+.......    ..          ++.++|++..    ++++.+.|     +.+.+|+.......
T Consensus       158 -----~~~~~~~~~----~~----------~~~~s~~g~~----~~v~~~~d-----g~~~~~~~~~~~~~  200 (373)
T d2madh_         158 -----SSDDQLLSS----PT----------CYHIHPGAPS----TFYLLCAQ-----GGLAKTDHAGGAAG  200 (373)
T ss_pred             -----CeEEEEecc----ce----------eEEEecCCCc----EEEEEcCC-----CeEEEEEcCCceee
Confidence                 232222211    11          6788998862    56677777     99999998765544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.30  E-value=3e-10  Score=87.35  Aligned_cols=108  Identities=8%  Similarity=0.004  Sum_probs=74.4

Q ss_pred             EEEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecCccE-------EEEEEcCCCCCCEEEE
Q 026295           13 TSSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAI-------LKVVWVPPEFGDAVAC   75 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s   75 (240)
                      ..++|+|||++|++++          .++.|++||..     +.+.+..+..+....       ..+.|+++  +..++.
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~-----t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~~v  141 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV-----TFLPIADIELPDAPRFDVGPYSWMNANTPN--NADLLF  141 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECC-----CCcEEEEEecCCcceeEeccCCCcEEEEeC--CCcEEE
Confidence            3689999999999875          35789999998     566666666554443       34667777  665444


Q ss_pred             E--ecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE-EEEEeCCCcEEEEEecC
Q 026295           76 I--CSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK-LVAAYSDGHVKVYELLD  140 (240)
Q Consensus        76 ~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~  140 (240)
                      .  ..+..+.+|+....       +.....    ....++.++|  ++.. +++.+.|+++.+|+...
T Consensus       142 ~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~s~--~g~~~~v~~~~dg~~~~~~~~~  196 (373)
T d2madh_         142 FQFAAGPAVGLVVQGGS-------SDDQLL----SSPTCYHIHP--GAPSTFYLLCAQGGLAKTDHAG  196 (373)
T ss_pred             EEEcCCCceEEeeccCC-------eEEEEe----ccceeEEEec--CCCcEEEEEcCCCeEEEEEcCC
Confidence            3  33456777777543       333222    3456788988  7654 56788999999999764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.30  E-value=4.3e-11  Score=91.46  Aligned_cols=196  Identities=8%  Similarity=0.014  Sum_probs=111.4

Q ss_pred             ceEEEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecCc-------cEEEEEEcCCCCCCEE
Q 026295           11 GTTSSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAG-------AILKVVWVPPEFGDAV   73 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~l   73 (240)
                      ....++|||||++|++.+          .|+.|++||..     +++.+..+..+..       ....+.|+++  +.++
T Consensus        48 ~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~-----t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--g~~~  120 (355)
T d2bbkh_          48 FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV-----TLLPTADIELPDAPRFLVGTYPWMTSLTPD--GKTL  120 (355)
T ss_dssp             SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT-----TCCEEEEEEETTCCCCCBSCCGGGEEECTT--SSEE
T ss_pred             CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC-----CCCEEEEEecCCcceeecCCCCceEEEecC--CCee
Confidence            344789999999887653          47899999998     5556655543322       2356789999  8877


Q ss_pred             EEEe--cCCeEEEEEeeeccCCCcccEEEEEeee---------------------------------------------c
Q 026295           74 ACIC--SDGSLLLWEEIVEDAQPLQWKLCKSFES---------------------------------------------T  106 (240)
Q Consensus        74 ~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~---------------------------------------------~  106 (240)
                      +.+.  .+..+.+|+...+       +.+..+..                                             +
T Consensus       121 ~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~  193 (355)
T d2bbkh_         121 LFYQFSPAPAVGVVDLEGK-------AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  193 (355)
T ss_dssp             EEEECSSSCEEEEEETTTT-------EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             EEecCCCCceeeeeecCCC-------cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee
Confidence            7654  4567888987554       22222111                                             0


Q ss_pred             cccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCce
Q 026295          107 STQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSS  186 (240)
Q Consensus       107 ~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~  186 (240)
                      ...+....+.+  ++..++.++.++.+.+|++....    .........+................+.++|++.     .
T Consensus       194 ~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~-----~  262 (355)
T d2bbkh_         194 EFLINHPAYSQ--KAGRLVWPTYTGKIHQIDLSSGD----AKFLPAVEALTEAERADGWRPGGWQQVAYHRALD-----R  262 (355)
T ss_dssp             SCBCSCCEEET--TTTEEEEEBTTSEEEEEECTTSS----CEECCCEESSCHHHHHTTEEECSSSCEEEETTTT-----E
T ss_pred             cceeeeccccC--CCCeEEEecCCCeEEEEecCCCc----EEEEeccCCcccceEeeeeeccceEEEEEeCCCC-----e
Confidence            11122344544  55667777888888888887531    1111111111111100000011122578888886     5


Q ss_pred             EEEEecCCCCC-----CCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          187 FVLGFNSDTPQ-----LNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       187 l~~~~~dd~~~-----~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ++....+....     .+.|.+||..+...    ...++    +...+++++|+||+.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~----~~~~~----~~~~~~~~a~spDG~  312 (355)
T d2bbkh_         263 IYLLVDQRDEWRHKTASRFVVVLDAKTGER----LAKFE----MGHEIDSINVSQDEK  312 (355)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCE----EEEEE----EEEEECEEEECCSSS
T ss_pred             EEEEeccCCceeecCCCCeEEEEeCCCCcE----EEEec----CCCCEEEEEEcCCCC
Confidence            55544331100     04789999877542    22332    223689999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.16  E-value=1e-09  Score=83.59  Aligned_cols=111  Identities=10%  Similarity=-0.075  Sum_probs=80.4

Q ss_pred             eEEEEECCCCCEEEEEe-----CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE----------
Q 026295           12 TTSSSWNYCGQRLATGS-----TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI----------   76 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------   76 (240)
                      +.-.+.+|++++++...     .+..|.+||..     +++.+.++..+..  ..++|+|+  |++|++.          
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~-----tg~~~~~~~~g~~--~~~a~SpD--g~~l~v~~~~~~~~~~g   74 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGE-----AGRVIGMIDGGFL--PNPVVADD--GSFIAHASTVFSRIARG   74 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETT-----TTEEEEEEEECSS--CEEEECTT--SSCEEEEEEEEEETTEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECC-----CCcEEEEEECCCC--CceEEcCC--CCEEEEEeCCCcccccc
Confidence            33446689999887753     34579999998     6677888776543  47999999  9877754          


Q ss_pred             ecCCeEEEEEeeeccCCCcccEEEEEeeecc-------ccEEeEEEeecCCCcEEEEEe--CCCcEEEEEecC
Q 026295           77 CSDGSLLLWEEIVEDAQPLQWKLCKSFESTS-------TQVLDVQFGVSSTSLKLVAAY--SDGHVKVYELLD  140 (240)
Q Consensus        77 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~--~dg~v~iw~~~~  140 (240)
                      ..|+.|++||..++       +.+..+..+.       .....++|+|  ++.+++.++  .+..+.+|+..+
T Consensus        75 ~~d~~v~v~D~~t~-------~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~~~v~~~~~~~~~~~~~~~~  138 (355)
T d2bbkh_          75 ERTDYVEVFDPVTL-------LPTADIELPDAPRFLVGTYPWMTSLTP--DGKTLLFYQFSPAPAVGVVDLEG  138 (355)
T ss_dssp             EEEEEEEEECTTTC-------CEEEEEEETTCCCCCBSCCGGGEEECT--TSSEEEEEECSSSCEEEEEETTT
T ss_pred             CCCCEEEEEECCCC-------CEEEEEecCCcceeecCCCCceEEEec--CCCeeEEecCCCCceeeeeecCC
Confidence            34789999999876       5555554322       2235678998  888877765  456788999877

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.11  E-value=5e-08  Score=74.98  Aligned_cols=173  Identities=9%  Similarity=0.028  Sum_probs=102.1

Q ss_pred             ceEEEEECCCCCEEEEEeC-CCcEEEEeCCCCCCCcEEEEeEee--ecCccEEEEEEcCCCCCCEEEEEe-cCCeEEEEE
Q 026295           11 GTTSSSWNYCGQRLATGST-DGTLSIFDSPDPSSSSFTCNLKTK--VHAGAILKVVWVPPEFGDAVACIC-SDGSLLLWE   86 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~-d~~i~iw~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~~-~d~~v~iwd   86 (240)
                      .+.+++|+|+|++|++++. ...|.+|+.....  .........  ........+.|+|+  ++++.... .+++|.+|+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g--~~~~~~~~~~~~~g~gPr~i~f~pd--g~~~yv~~e~~~~V~v~~  221 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASG--EVELVGSVDAPDPGDHPRWVAMHPT--GNYLYALMEAGNRICEYV  221 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTS--CEEEEEEEECSSTTCCEEEEEECTT--SSEEEEEETTTTEEEEEE
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCC--ceeeccceeecCCCCceEEEEECCC--CceEEEeccCCCEEEEEE
Confidence            4679999999998888764 3578888765432  233333332  23456789999999  88776555 578999999


Q ss_pred             eeeccCCCcccEEEEEee--------------eccccEEeEEEeecCCCcEEEEEeC-C-----CcEEEEEecCcccccc
Q 026295           87 EIVEDAQPLQWKLCKSFE--------------STSTQVLDVQFGVSSTSLKLVAAYS-D-----GHVKVYELLDPLILKN  146 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~~~l~~~~~-d-----g~v~iw~~~~~~~~~~  146 (240)
                      +.....  ..........              ........+.++|  +|++|+++.. +     +.|..|++........
T Consensus       222 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp--dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~  297 (365)
T d1jofa_         222 IDPATH--MPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF--SGKYMFASSRANKFELQGYIAGFKLRDCGSIEK  297 (365)
T ss_dssp             ECTTTC--CEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT--TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred             ecCCCc--eEEEEeeeeccccccccccccccccccCCccceEECC--CCCEEEEEcccCCCccceEEEEEEecCCCceee
Confidence            865422  1111222211              1123456788999  9998877643 1     2366676654221111


Q ss_pred             eeEEeeeecccceeeccccccceeeeEEEeC-CCCCCCCceEEEEecCCCCCCCeEEEEEeecCC
Q 026295          147 WQLQAEFQNAIDSVTMFRKASCISASISWNP-QKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAH  210 (240)
Q Consensus       147 ~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p-~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~  210 (240)
                      ...........          ...+.++++| ++.     +|+++..++    +.|.+|+++...
T Consensus       298 ~~~~~~~~~~G----------~~p~~i~~~p~~G~-----~l~va~~~s----~~v~v~~~~~~~  343 (365)
T d1jofa_         298 QLFLSPTPTSG----------GHSNAVSPCPWSDE-----WMAITDDQE----GWLEIYRWKDEF  343 (365)
T ss_dssp             EEEEEECSSCC----------TTCCCEEECTTCTT-----EEEEECSSS----CEEEEEEEETTE
T ss_pred             EeEeeEEEcCC----------CCccEEEecCCCCC-----EEEEEeCCC----CeEEEEEEeCCc
Confidence            11111100000          1113788998 454     677776555    999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.09  E-value=4.8e-10  Score=89.22  Aligned_cols=108  Identities=12%  Similarity=0.080  Sum_probs=82.8

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeE-----eeecCccEEEEEEcCCCCCCEEEEEec---------
Q 026295           13 TSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLK-----TKVHAGAILKVVWVPPEFGDAVACICS---------   78 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-----~~~h~~~v~~~~~~~~~~~~~l~s~~~---------   78 (240)
                      ..+.|.++++++..  .|+.+.+||+...     +....     +..|...|.++.|||+  |++|+.++.         
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~-----~~~~~~~~~~~~~~~~~i~~~~~SpD--g~~i~~~~~~~~~~r~s~   90 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYG-----NSSVFLENSTFDEFGHSINDYSISPD--GQFILLEYNYVKQWRHSY   90 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTC-----CEEEEECTTTTTTSSSCCCEEEECTT--SSEEEEEEEEEECSSSCE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCC-----CEEEEEchhhhhhccCccceeEECCC--CCEEEEEECCcceeeecc
Confidence            45789999987764  5788999999843     33332     3345578999999999  999887743         


Q ss_pred             CCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           79 DGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        79 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      ++.+.+||+..+        .+..+..+...+..+.|||  +|..+|... ++.+.+|+...
T Consensus        91 ~~~~~l~d~~~~--------~~~~l~~~~~~~~~~~~SP--DG~~ia~~~-~~~l~~~~~~~  141 (470)
T d2bgra1          91 TASYDIYDLNKR--------QLITEERIPNNTQWVTWSP--VGHKLAYVW-NNDIYVKIEPN  141 (470)
T ss_dssp             EEEEEEEETTTT--------EECCSSCCCTTEEEEEECS--STTCEEEEE-TTEEEEESSTT
T ss_pred             CceEEEEECCCC--------cccccccCCcccccccccc--CcceeeEee-cccceEEECCC
Confidence            467889999764        3455667778899999999  999988865 66889998776

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.05  E-value=1.2e-09  Score=84.15  Aligned_cols=108  Identities=8%  Similarity=-0.017  Sum_probs=73.1

Q ss_pred             EEEEECCCCCEEEEEe----------CCCcEEEEeCCCCCCCcEEEEeEeeecCc-------cEEEEEEcCCCCCCEEEE
Q 026295           13 TSSSWNYCGQRLATGS----------TDGTLSIFDSPDPSSSSFTCNLKTKVHAG-------AILKVVWVPPEFGDAVAC   75 (240)
Q Consensus        13 ~~~~~s~~~~~l~~~~----------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~-------~v~~~~~~~~~~~~~l~s   75 (240)
                      ..++|+|+|+.|++.+          .|+.|++||..     +++.+..+..+..       ....+.|+|+  |++++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~-----t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD--Gk~l~v  140 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPV-----TFLPIADIELPDAPRFSVGPRVHIIGNCAS--SACLLF  140 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTT-----TCCEEEEEEETTSCSCCBSCCTTSEEECTT--SSCEEE
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECC-----CCcEeeeecCCccceecccCCccceEECCC--CCEEEE
Confidence            4589999999888765          46789999998     5566666654332       2346899999  998887


Q ss_pred             Ee-cCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           76 IC-SDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        76 ~~-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      +. .++.+.+||+..+       +....+..+....    +.|. ....++..+.||++.++++.
T Consensus       141 a~~~~~~v~~~d~~~~-------~~~~~~~~~~~~~----~~~~-~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         141 FLFGSSAAAGLSVPGA-------SDDQLTKSASCFH----IHPG-AAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             EECSSSCEEEEEETTT-------EEEEEEECSSCCC----CEEE-ETTEEECCCCTTSCEEEECC
T ss_pred             EeCCCCeEEEEECCCC-------cEeEEeeccCcce----EccC-CCceEEEEcCCCCEEEEEec
Confidence            75 5789999999876       6666665443221    1121 22345556667777777654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.04  E-value=1.2e-07  Score=70.83  Aligned_cols=192  Identities=9%  Similarity=0.022  Sum_probs=115.1

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      .+..++++|+|+++++...+++|..++...    .   ...+......+..++|.++  |+++++...++.+..++....
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g----~---~~~~~~~~~~~~gla~~~d--G~l~v~~~~~~~~~~~~~~~~   99 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG----N---QQIHATVEGKVSGLAFTSN--GDLVATGWNADSIPVVSLVKS   99 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC----C---EEEEEECSSEEEEEEECTT--SCEEEEEECTTSCEEEEEECT
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC----C---EEEEEcCCCCcceEEEcCC--CCeEEEecCCceEEEEEeccc
Confidence            577899999999999999999888887653    2   2233445678999999999  999888888888888887654


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                      ...   ...+... ........+.+.+  ++.++++-+.++.+..++....      .....+.................
T Consensus       100 ~~~---~~~~~~~-~~~~~~n~i~~~~--~g~~~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1         100 DGT---VETLLTL-PDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQP------SGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             TSC---EEEEEEC-TTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTT------EEEEEEECGGGSCSSTTCCSCSE
T ss_pred             ccc---eeecccc-CCccccceeEEcc--CCCEEeeccccccceeeeccCC------cceeEecCCccceeeccCccccc
Confidence            320   1111121 2335578889988  9998888888888877776652      11111111100000011112233


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      +.+.++...      ++.+....     +.|..++.......... ....    .......++|.+|+.
T Consensus       168 ngi~~~~~~------l~~~~~~~-----~~i~~~~~~~~~~~~~~-~~~~----~~~~pdgia~d~dG~  220 (302)
T d2p4oa1         168 NGLKRFGNF------LYVSNTEK-----MLLLRIPVDSTDKPGEP-EIFV----EQTNIDDFAFDVEGN  220 (302)
T ss_dssp             EEEEEETTE------EEEEETTT-----TEEEEEEBCTTSCBCCC-EEEE----ESCCCSSEEEBTTCC
T ss_pred             ccccccCCc------eeeecCCC-----CeEEecccccccccccc-cccc----CCCCCcceEECCCCC
Confidence            456665432      45555555     88888877654322111 1111    111345677877763

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.87  E-value=1.5e-08  Score=77.83  Aligned_cols=124  Identities=9%  Similarity=-0.102  Sum_probs=84.9

Q ss_pred             cccceEEEEECCCCCEE--E-EEeCCCc--EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEe-----
Q 026295            8 LDKGTTSSSWNYCGQRL--A-TGSTDGT--LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACIC-----   77 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l--~-~~~~d~~--i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-----   77 (240)
                      +.+....++..++++..  + ....++.  |.++|..     +.+.+..+..+...  .+.|+|+  |+.++..+     
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~-----~~~~~~~~~~~~~~--~~a~spD--g~~i~~~~~~~~~   88 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAG-----CGVTLGHSLGAFLS--LAVAGHS--GSDFALASTSFAR   88 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETT-----TTEEEEEEEECTTC--EEEECTT--SSCEEEEEEEETT
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCC-----CCcEEEEEeCCCCC--cceECCC--CCEEEEEcccCcc
Confidence            44555666778888753  2 2344555  5555766     56777777765544  5899999  98887654     


Q ss_pred             -----cCCeEEEEEeeeccCCCcccEEEEEeeecc-------ccEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccc
Q 026295           78 -----SDGSLLLWEEIVEDAQPLQWKLCKSFESTS-------TQVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLIL  144 (240)
Q Consensus        78 -----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~  144 (240)
                           .|+.|++||..+.       +++..+..+.       .....++|+|  +|++++++. .++.+.+||+.+    
T Consensus        89 ~~~g~~d~~v~v~D~~t~-------~~~~~i~~p~~~~~~~g~~p~~~a~Sp--DGk~l~va~~~~~~v~~~d~~~----  155 (368)
T d1mdah_          89 SAKGKRTDYVEVFDPVTF-------LPIADIELPDAPRFSVGPRVHIIGNCA--SSACLLFFLFGSSAAAGLSVPG----  155 (368)
T ss_dssp             TTSSSEEEEEEEECTTTC-------CEEEEEEETTSCSCCBSCCTTSEEECT--TSSCEEEEECSSSCEEEEEETT----
T ss_pred             ccccccCCeEEEEECCCC-------cEeeeecCCccceecccCCccceEECC--CCCEEEEEeCCCCeEEEEECCC----
Confidence                 3678999999766       6666665432       1234689999  999888776 579999999987    


Q ss_pred             cceeEEeeeec
Q 026295          145 KNWQLQAEFQN  155 (240)
Q Consensus       145 ~~~~~~~~~~~  155 (240)
                        .+....+..
T Consensus       156 --~~~~~~~~~  164 (368)
T d1mdah_         156 --ASDDQLTKS  164 (368)
T ss_dssp             --TEEEEEEEC
T ss_pred             --CcEeEEeec
Confidence              455555433

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=4e-09  Score=83.80  Aligned_cols=116  Identities=13%  Similarity=0.081  Sum_probs=83.9

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGST---------DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA   74 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~---------d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~   74 (240)
                      ++..|...|.++.|||||++|+.++.         ++.+.|||+.     +.+ +..+..+...+..+.|||+  |+.++
T Consensus        56 ~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~-----~~~-~~~l~~~~~~~~~~~~SPD--G~~ia  127 (470)
T d2bgra1          56 TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-----KRQ-LITEERIPNNTQWVTWSPV--GHKLA  127 (470)
T ss_dssp             TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-----TTE-ECCSSCCCTTEEEEEECSS--TTCEE
T ss_pred             hhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC-----CCc-ccccccCCccccccccccC--cceee
Confidence            46667788999999999999998854         4678899998     334 4556778889999999999  99998


Q ss_pred             EEecCCeEEEEEeeeccCCCcccEEEEEeee------------------ccccEEeEEEeecCCCcEEEEEeCCCc-EEE
Q 026295           75 CICSDGSLLLWEEIVEDAQPLQWKLCKSFES------------------TSTQVLDVQFGVSSTSLKLVAAYSDGH-VKV  135 (240)
Q Consensus        75 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~~~l~~~~~dg~-v~i  135 (240)
                      .. .+..+.+|+...+.       ..+....                  .......+.|+|  +|++|+....|.+ |..
T Consensus       128 ~~-~~~~l~~~~~~~g~-------~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSP--DGk~ia~~~~d~~~v~~  197 (470)
T d2bgra1         128 YV-WNNDIYVKIEPNLP-------SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPL  197 (470)
T ss_dssp             EE-ETTEEEEESSTTSC-------CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCE
T ss_pred             Ee-ecccceEEECCCCc-------eeeeeeccCCCcccccccceeeeeeecCCccccEECC--CCCccceeEecCCcCce
Confidence            85 57789999987652       2211110                  112345678999  9999998875533 444


Q ss_pred             EE
Q 026295          136 YE  137 (240)
Q Consensus       136 w~  137 (240)
                      |.
T Consensus       198 ~~  199 (470)
T d2bgra1         198 IE  199 (470)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.79  E-value=3.2e-08  Score=77.21  Aligned_cols=205  Identities=7%  Similarity=0.019  Sum_probs=114.3

Q ss_pred             cccceEEEEECCCCC--EEEEEeCCCc-----------------EEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCC
Q 026295            8 LDKGTTSSSWNYCGQ--RLATGSTDGT-----------------LSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPE   68 (240)
Q Consensus         8 h~~~v~~~~~s~~~~--~l~~~~~d~~-----------------i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~   68 (240)
                      +......++|+|+|+  +++..+.+..                 +..+|..     +.+....+.. .+....+.|+|+ 
T Consensus       114 ~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~-----t~~v~~qI~v-~~~p~~v~~spd-  186 (441)
T d1qnia2         114 NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAE-----TMDVAWQVIV-DGNLDNTDADYT-  186 (441)
T ss_dssp             TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETT-----TCSEEEEEEE-SSCCCCEEECSS-
T ss_pred             CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCc-----cceeeEEEec-CCCccceEECCC-
Confidence            456788999999998  5555554321                 2335554     3333344443 245678999999 


Q ss_pred             CCCEEEEEecCC---------------eEEEEEeee-------------ccCC------CcccEEEEEeeeccccEEeEE
Q 026295           69 FGDAVACICSDG---------------SLLLWEEIV-------------EDAQ------PLQWKLCKSFESTSTQVLDVQ  114 (240)
Q Consensus        69 ~~~~l~s~~~d~---------------~v~iwd~~~-------------~~~~------~~~~~~~~~~~~~~~~v~~~~  114 (240)
                       |.++++.+.+.               .|.+.+...             +...      ...-..++.+... .....+.
T Consensus       187 -Gk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~  264 (441)
T d1qnia2         187 -GKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP-KNPHGLN  264 (441)
T ss_dssp             -SSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB-SSCCCEE
T ss_pred             -CCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC-CCccCce
Confidence             99888776542               111111000             0000      0000223344433 3357899


Q ss_pred             EeecCCCcEEE-EEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecC
Q 026295          115 FGVSSTSLKLV-AAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNS  193 (240)
Q Consensus       115 ~~~~~~~~~l~-~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~d  193 (240)
                      ++|  +|++++ ++..+++|.+||+.+....-...+     .....+.......-.....+|++.+.     .+.+.+.|
T Consensus       265 vSP--DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~-----~~~~~~~~~~~~glgplh~~fd~~g~-----~yts~~~d  332 (441)
T d1qnia2         265 TSP--DGKYFIANGKLSPTVSVIAIDKLDDLFEDKI-----ELRDTIVAEPELGLGPLHTTFDGRGN-----AYTTLFID  332 (441)
T ss_dssp             ECT--TSCEEEEECTTSSBEEEEEGGGHHHHTTTSS-----CGGGGEEECCBCCSCEEEEEECSSSE-----EEEEETTT
T ss_pred             ECC--CCCEEEEeCCcCCcEEEEEeehhhhHhhccC-----CcceEEEeecccccCcccceecCCce-----EEEccccc
Confidence            999  999765 566889999999976432111110     11111111111111223568999875     67777777


Q ss_pred             CCCCCCeEEEEEeecC------CCCcceeEeeecC--CCCCCceEEEEEecCC
Q 026295          194 DTPQLNSSKVWEFDEA------HNRWLPVAELALP--EDRSDEVYAVAWALNI  238 (240)
Q Consensus       194 d~~~~~~i~iw~~~~~------~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~  238 (240)
                           ..|..|++...      ...+.....+..|  .||...+.+.+|+|||
T Consensus       333 -----s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG  380 (441)
T d1qnia2         333 -----SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG  380 (441)
T ss_dssp             -----TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred             -----ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence                 99999998531      2222233334333  3688888899999987

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=6.8e-06  Score=59.50  Aligned_cols=188  Identities=14%  Similarity=0.039  Sum_probs=102.7

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCCC---cEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTDG---TLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG   80 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d~---~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~   80 (240)
                      |..+...+..-+|||||++||-.....   .+.+.+....     . ...+..+.+......|+|+  |..++.... ++
T Consensus        34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~spd--g~~i~~~~~~~~  105 (269)
T d2hqsa1          34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-----A-VRQVASFPRHNGAPAFSPD--GSKLAFALSKTG  105 (269)
T ss_dssp             EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-----C-EEEEECCSSCEEEEEECTT--SSEEEEEECTTS
T ss_pred             EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccC-----c-eeEEeeeecccccceecCC--CCeeeEeeecCC
Confidence            445666788899999999998765443   3555555422     1 2233446677889999999  887776543 33


Q ss_pred             eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcE-EEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           81 SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLK-LVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        81 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ...++......      .................+++  .+.. +++...+|...+|......    .. ...+......
T Consensus       106 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~i~~~~~~~----~~-~~~~~~~~~~  172 (269)
T d2hqsa1         106 SLNLYVMDLAS------GQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNING----GA-PQRITWEGSQ  172 (269)
T ss_dssp             SCEEEEEETTT------CCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTS----SC-CEECCCSSSE
T ss_pred             ccceeeccccc------ccceeeeecccccccccccc--ccccceecccccCCceEeeeeccc----cc-ceeeeccccc
Confidence            33333332221      11222222223334445555  4443 4445556665555543221    11 1111112222


Q ss_pred             eeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          160 VTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ..          ...|+|++.     .++..+.+.    +...+|...........   +.    +........|||||.
T Consensus       173 ~~----------~~~~spdg~-----~~~~~~~~~----~~~~i~~~~~~~~~~~~---~~----~~~~~~~p~~SPDG~  226 (269)
T d2hqsa1         173 NQ----------DADVSSDGK-----FMVMVSSNG----GQQHIAKQDLATGGVQV---LS----STFLDETPSLAPNGT  226 (269)
T ss_dssp             EE----------EEEECTTSS-----EEEEEEECS----SCEEEEEEETTTCCEEE---CC----CSSSCEEEEECTTSS
T ss_pred             cc----------ccccccccc-----eeEEEeecC----CceeeeEeecccccceE---ee----cCccccceEECCCCC
Confidence            22          567999987     566555543    77777777665433221   11    233667889999984

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.65  E-value=1.5e-05  Score=59.55  Aligned_cols=185  Identities=9%  Similarity=0.069  Sum_probs=103.2

Q ss_pred             eEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecC----ccEEEEEEcCCCCCCEEEEEecC--------
Q 026295           12 TTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHA----GAILKVVWVPPEFGDAVACICSD--------   79 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~~d--------   79 (240)
                      -..++|++++++|+++.....|..++....    ...+.. ....    ...+++.+.++  |.+.++-...        
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~----~~~~~~-~~~~g~~~~~pndl~~d~~--G~lyvtd~~~~~~~~~~~  145 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGT----FEEIAK-KDSEGRRMQGCNDCAFDYE--GNLWITAPAGEVAPADYT  145 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSC----EEECCS-BCTTSCBCBCCCEEEECTT--SCEEEEECBCBCTTSCCC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCc----EEEEEe-ccccccccCCCcEEEECCC--CCEEEecCccCccccccc
Confidence            457999999998888887777888887632    111111 1111    13578999888  8877663221        


Q ss_pred             -----CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCc-----EEEEEeCCCcEEEEEecCcccccceeE
Q 026295           80 -----GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSL-----KLVAAYSDGHVKVYELLDPLILKNWQL  149 (240)
Q Consensus        80 -----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----~l~~~~~dg~v~iw~~~~~~~~~~~~~  149 (240)
                           ..=++|.+... +     +..... ..-.....++|+|  ++.     ++++-+..+.|..|++..+......+.
T Consensus       146 ~~~~~~~G~v~~~~~d-g-----~~~~~~-~~~~~pNGi~~~~--d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~  216 (314)
T d1pjxa_         146 RSMQEKFGSIYCFTTD-G-----QMIQVD-TAFQFPNGIAVRH--MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV  216 (314)
T ss_dssp             BTTSSSCEEEEEECTT-S-----CEEEEE-EEESSEEEEEEEE--CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred             ceeccCCceEEEEeec-C-----ceeEee-CCcceeeeeEECC--CCCcceeEEEEEeecccceEEeeccCccccceeeE
Confidence                 11134433221 1     221111 2223346789998  542     445556778888888765422222222


Q ss_pred             EeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCce
Q 026295          150 QAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEV  229 (240)
Q Consensus       150 ~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v  229 (240)
                      ...+.....         .....+++.+++.     ++++....     +.|.+|+.+.+...    ..+..+   ....
T Consensus       217 ~~~~~~~~~---------~~pdGiavD~~Gn-----lyVa~~~~-----g~I~~~dp~~g~~~----~~i~~p---~~~~  270 (314)
T d1pjxa_         217 WGHIPGTHE---------GGADGMDFDEDNN-----LLVANWGS-----SHIEVFGPDGGQPK----MRIRCP---FEKP  270 (314)
T ss_dssp             EEECCCCSS---------CEEEEEEEBTTCC-----EEEEEETT-----TEEEEECTTCBSCS----EEEECS---SSCE
T ss_pred             EEEcccccc---------ccceeeEEecCCc-----EEEEEcCC-----CEEEEEeCCCCEEE----EEEECC---CCCE
Confidence            222211111         1112688888886     55555555     89999987654422    222222   2368


Q ss_pred             EEEEEecCC
Q 026295          230 YAVAWALNI  238 (240)
Q Consensus       230 ~~v~~sp~~  238 (240)
                      ++++|.||+
T Consensus       271 t~~afg~d~  279 (314)
T d1pjxa_         271 SNLHFKPQT  279 (314)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999999976

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.65  E-value=8.2e-06  Score=62.29  Aligned_cols=202  Identities=9%  Similarity=-0.049  Sum_probs=107.4

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCE--EEEEe-cCCeEEEEE
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDA--VACIC-SDGSLLLWE   86 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--l~s~~-~d~~v~iwd   86 (240)
                      ..+..|+|++++++|.+... +.+..|.+....  ........ ........+.++++  ++.  +++.. ..+.|..+.
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~--~~~~~~~~-~~~~~p~~v~~~~~--~~~~~v~~a~~~~~~v~~~~  113 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPT--EIVHEASH-PIGGHPRANDADTN--TRAIFLLAAKQPPYAVYANP  113 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETT--EEEEEEEE-ECCSSGGGGCTTSC--CEEEEEEECSSTTCCEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCC--CeEEEeee-cCCCCcEEEEECCC--CCEEEEEEecCCCCEEEEeE
Confidence            34667999999999988866 568888776431  11111111 12234556777777  663  33322 234555444


Q ss_pred             eeeccCC---------CcccEEEEEe-eeccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeec
Q 026295           87 EIVEDAQ---------PLQWKLCKSF-ESTSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        87 ~~~~~~~---------~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      +......         .......... ......+.++.|+|  +|++++++.. ...|.+|+......   ......+..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sP--dG~~l~v~d~g~d~v~~~~~~~~g~---~~~~~~~~~  188 (365)
T d1jofa_         114 FYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGE---VELVGSVDA  188 (365)
T ss_dssp             ESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSC---EEEEEEEEC
T ss_pred             ccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECC--CCCEEEEeeCCCCEEEEEEccCCCc---eeeccceee
Confidence            3211100         0000111111 12234578999999  9998887764 35788887654211   111111111


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcce-eEeeec-----------CC
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLP-VAELAL-----------PE  223 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~-~~~~~~-----------~~  223 (240)
                      ..        .......+.|+|++.     ++.+....+    +.|.+|++......... ...+..           ..
T Consensus       189 ~~--------~g~gPr~i~f~pdg~-----~~yv~~e~~----~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (365)
T d1jofa_         189 PD--------PGDHPRWVAMHPTGN-----YLYALMEAG----NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             SS--------TTCCEEEEEECTTSS-----EEEEEETTT----TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             cC--------CCCceEEEEECCCCc-----eEEEeccCC----CEEEEEEecCCCceEEEEeeeeccccccccccccccc
Confidence            10        112234899999997     666666554    99999999765433211 111110           11


Q ss_pred             CCCCceEEEEEecCCC
Q 026295          224 DRSDEVYAVAWALNIG  239 (240)
Q Consensus       224 ~h~~~v~~v~~sp~~~  239 (240)
                      .+......+.++||+.
T Consensus       252 ~~~~~~~~i~~spdG~  267 (365)
T d1jofa_         252 KGLYRADVCALTFSGK  267 (365)
T ss_dssp             SBSEEEEEEEECTTSS
T ss_pred             cccCCccceEECCCCC
Confidence            1233466889999974

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.63  E-value=7.3e-07  Score=69.44  Aligned_cols=106  Identities=8%  Similarity=-0.030  Sum_probs=68.8

Q ss_pred             cccceEEEEECCCCCEEEEE-eCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCC--EEEEEecCCe--
Q 026295            8 LDKGTTSSSWNYCGQRLATG-STDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGD--AVACICSDGS--   81 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~-~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~--~l~s~~~d~~--   81 (240)
                      |.-......++|||++|++. ..+..|.++|+.     +++....+. .+...+..+.|+|+  |+  +++..+.+..  
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~-----t~k~~~ii~iP~g~gphgi~~spd--g~t~YV~~~~~~~v~~  142 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLD-----IMKTDKITHIPNVQAIHGLRLQKV--PKTNYVFCNAEFVIPQ  142 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETT-----TTEEEEEEECTTCCCEEEEEECCS--SBCCEEEEEECSCEES
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECC-----CCcEeeEEecCCCCCccceEEecc--CCEEEEEeccCCcccc
Confidence            33445566678999988665 467899999998     666666554 34667999999998  76  5555443321  


Q ss_pred             ---------------EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295           82 ---------------LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        82 ---------------v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                                     +..+|..+.       +...++... .....+.|+|  +|+++++.+.+
T Consensus       143 ~~dg~~~~~~~~~~~~~~iD~~t~-------~v~~qI~v~-~~p~~v~~sp--dGk~a~vt~~n  196 (441)
T d1qnia2         143 PNDGTDFSLDNSYTMFTAIDAETM-------DVAWQVIVD-GNLDNTDADY--TGKYATSTCYN  196 (441)
T ss_dssp             SCSSSCCCGGGEEEEEEEEETTTC-------SEEEEEEES-SCCCCEEECS--SSSEEEEEESC
T ss_pred             cCcccccccccccceEEeecCccc-------eeeEEEecC-CCccceEECC--CCCEEEEEecC
Confidence                           122333322       333333322 4567899999  99988877755

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.59  E-value=2.3e-05  Score=58.00  Aligned_cols=186  Identities=11%  Similarity=0.014  Sum_probs=110.0

Q ss_pred             cccccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEE
Q 026295            6 ATLDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLW   85 (240)
Q Consensus         6 ~~h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iw   85 (240)
                      ..+...+.+++|+++|+++++...++.+.+++...... ....+.... .....+.+.+.++  +.++++-+.++.+..+
T Consensus        64 ~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~n~i~~~~~--g~~~v~~~~~~~i~~~  139 (302)
T d2p4oa1          64 ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG-TVETLLTLP-DAIFLNGITPLSD--TQYLTADSYRGAIWLI  139 (302)
T ss_dssp             EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS-CEEEEEECT-TCSCEEEEEESSS--SEEEEEETTTTEEEEE
T ss_pred             EcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc-ceeeccccC-CccccceeEEccC--CCEEeeccccccceee
Confidence            34566889999999999999988888888887653311 222222222 3456889999998  8888887777877777


Q ss_pred             EeeeccCCCcccEEEEEee----------eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeec
Q 026295           86 EEIVEDAQPLQWKLCKSFE----------STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQN  155 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~  155 (240)
                      +...+       .......          ........+.++.   +.++++.+..+.|..++...............   
T Consensus       140 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~---~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---  206 (302)
T d2p4oa1         140 DVVQP-------SGSIWLEHPMLARSNSESVFPAANGLKRFG---NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE---  206 (302)
T ss_dssp             ETTTT-------EEEEEEECGGGSCSSTTCCSCSEEEEEEET---TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE---
T ss_pred             eccCC-------cceeEecCCccceeeccCcccccccccccC---CceeeecCCCCeEEeccccccccccccccccC---
Confidence            76543       1111111          1112345565543   34566667778888887765322221111111   


Q ss_pred             ccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          156 AIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       156 ~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                       ....          ..+++++++.     ++++...+     +.|..++....   .........   .-...++++|.
T Consensus       207 -~~~p----------dgia~d~dG~-----l~va~~~~-----~~V~~i~p~G~---~~~~~~~~~---~~~~pt~vafg  259 (302)
T d2p4oa1         207 -QTNI----------DDFAFDVEGN-----LYGATHIY-----NSVVRIAPDRS---TTIIAQAEQ---GVIGSTAVAFG  259 (302)
T ss_dssp             -SCCC----------SSEEEBTTCC-----EEEECBTT-----CCEEEECTTCC---EEEEECGGG---TCTTEEEEEEC
T ss_pred             -CCCC----------cceEECCCCC-----EEEEEcCC-----CcEEEECCCCC---EEEEEecCC---CCCCceEEEEc
Confidence             1111          2799999987     66666666     88888865432   111222111   12257899994

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.52  E-value=1.8e-05  Score=57.93  Aligned_cols=155  Identities=10%  Similarity=0.053  Sum_probs=104.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEe--eecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEee
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKT--KVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEI   88 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~   88 (240)
                      ....++++++|+++++....+.+.+++...      +.+..+  ..+......+++.++  +.++++....+.|.+|+..
T Consensus       115 ~p~~~avd~~G~i~v~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~i~~d~~--g~i~v~d~~~~~V~~~d~~  186 (279)
T d1q7fa_         115 HPRGVTVDNKGRIIVVECKVMRVIIFDQNG------NVLHKFGCSKHLEFPNGVVVNDK--QEIFISDNRAHCVKVFNYE  186 (279)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTS------CEEEEEECTTTCSSEEEEEECSS--SEEEEEEGGGTEEEEEETT
T ss_pred             ccceeccccCCcEEEEeeccceeeEeccCC------ceeecccccccccccceeeeccc--eeEEeeeccccceeeeecC
Confidence            456788889998888877777788887653      234443  234556788999888  8888888888899999875


Q ss_pred             eccCCCcccEEEEEee--eccccEEeEEEeecCCCcEEEEEeC-CCcEEEEEecCcccccceeEEeeeecccceeecccc
Q 026295           89 VEDAQPLQWKLCKSFE--STSTQVLDVQFGVSSTSLKLVAAYS-DGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRK  165 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  165 (240)
                      .        +.+..+.  +.......|++++  +|+++++-.. ++.|.+|+..       ++.+..+......      
T Consensus       187 G--------~~~~~~g~~g~~~~P~giavD~--~G~i~Vad~~~~~~v~~f~~~-------G~~~~~~~~~~~~------  243 (279)
T d1q7fa_         187 G--------QYLRQIGGEGITNYPIGVGINS--NGEILIADNHNNFNLTIFTQD-------GQLISALESKVKH------  243 (279)
T ss_dssp             C--------CEEEEESCTTTSCSEEEEEECT--TCCEEEEECSSSCEEEEECTT-------SCEEEEEEESSCC------
T ss_pred             C--------ceeeeecccccccCCccccccc--CCeEEEEECCCCcEEEEECCC-------CCEEEEEeCCCCC------
Confidence            4        4455553  2334567899988  8886666443 4468888743       3444444322110      


Q ss_pred             ccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecC
Q 026295          166 ASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEA  209 (240)
Q Consensus       166 ~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~  209 (240)
                        .....|+..|++.      |+++..+     +.|++|.+...
T Consensus       244 --~~p~~vav~~dG~------l~V~~~n-----~~v~~fr~~~~  274 (279)
T d1q7fa_         244 --AQCFDVALMDDGS------VVLASKD-----YRLYIYRYVQL  274 (279)
T ss_dssp             --SCEEEEEEETTTE------EEEEETT-----TEEEEEECSCC
T ss_pred             --CCEeEEEEeCCCc------EEEEeCC-----CeEEEEEeeee
Confidence              0112788999874      5566666     89999998653

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=2.4e-06  Score=62.04  Aligned_cols=179  Identities=11%  Similarity=-0.007  Sum_probs=103.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeec
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVE   90 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~   90 (240)
                      ....++++++|+++++....+.+++++-.     ....+..... ......+++.++  ++++++-.....+..++....
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~-----~~~~~~~~~~-~~~p~~iavd~~--g~i~v~d~~~~~~~~~~~~~~  129 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGS-----NNQTVLPFDG-LNYPEGLAVDTQ--GAVYVADRGNNRVVKLAAGSK  129 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTC-----SCCEECCCCS-CCSEEEEEECTT--CCEEEEEGGGTEEEEECTTCS
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeec-----cceeeeeeee-eeeccccccccc--ceeEeeccccccccccccccc
Confidence            34678999999888777766666665543     2222332222 345788999888  887776555566666655332


Q ss_pred             cCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeecccccccee
Q 026295           91 DAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCIS  170 (240)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  170 (240)
                      .      ....... .......++++|  ++.++++...++.|..++....     ....... .....          .
T Consensus       130 ~------~~~~~~~-~~~~p~~i~~~~--~g~~~v~~~~~~~i~~~d~~~~-----~~~~~~~-~~~~~----------p  184 (260)
T d1rwia_         130 T------QTVLPFT-GLNDPDGVAVDN--SGNVYVTDTDNNRVVKLEAESN-----NQVVLPF-TDITA----------P  184 (260)
T ss_dssp             S------CEECCCC-SCCSCCEEEECT--TCCEEEEEGGGTEEEEECTTTC-----CEEECCC-SSCCS----------E
T ss_pred             e------eeeeeec-ccCCcceeeecC--CCCEeeeccccccccccccccc-----eeeeeec-cccCC----------C
Confidence            1      1111111 123456788988  8887777778888888886642     1111111 11111          1


Q ss_pred             eeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCCC
Q 026295          171 ASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       171 ~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      ..+++++++.     ++++....     +.|..++......  ...   .  ...-.....|++++++.
T Consensus       185 ~gi~~d~~g~-----l~vsd~~~-----~~i~~~~~~~~~~--~~~---~--~~~~~~P~~i~~d~~g~  236 (260)
T d1rwia_         185 WGIAVDEAGT-----VYVTEHNT-----NQVVKLLAGSTTS--TVL---P--FTGLNTPLAVAVDSDRT  236 (260)
T ss_dssp             EEEEECTTCC-----EEEEETTT-----TEEEEECTTCSCC--EEC---C--CCSCCCEEEEEECTTCC
T ss_pred             ccceeeeeee-----eeeeecCC-----CEEEEEeCCCCeE--EEE---c--cCCCCCeEEEEEeCCCC
Confidence            2788998876     55555555     7777776543321  111   1  01112568899998863

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.41  E-value=8e-05  Score=55.52  Aligned_cols=196  Identities=10%  Similarity=0.045  Sum_probs=104.9

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecC----CeEEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSD----GSLLLWE   86 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----~~v~iwd   86 (240)
                      .+..++|+++|++.++-...+.|..|+....     .....+.........+++.++  |.++++...+    +.+...+
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~-----~~~~~~~~~~~~p~gla~~~d--G~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK-----EIKRPFVSHKANPAAIKIHKD--GRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTC-----CEEEEEECSSSSEEEEEECTT--SCEEEEECTTSSSCCEEEEEC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCC-----eEEEEEeCCCCCeeEEEECCC--CCEEEEecCCCccceeEEEEc
Confidence            3568999999998887778888888887632     223333344556788888888  8776654322    1222222


Q ss_pred             eeecc--------------------CCCccc------------EEEE----------EeeeccccEEeEEEeecCCCcEE
Q 026295           87 EIVED--------------------AQPLQW------------KLCK----------SFESTSTQVLDVQFGVSSTSLKL  124 (240)
Q Consensus        87 ~~~~~--------------------~~~~~~------------~~~~----------~~~~~~~~v~~~~~~~~~~~~~l  124 (240)
                      .....                    ..+.-|            ..+.          .+...-.....++|+|  +++.|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~--dg~~l  191 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALST--DEKVL  191 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT--TSSEE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeecc--ccceE
Confidence            11100                    000000            0011          1111112335689988  88755


Q ss_pred             -EEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEE
Q 026295          125 -VAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKV  203 (240)
Q Consensus       125 -~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~i  203 (240)
                       ++-+..+.|..|++..+..................        -....+++++++.     +.++....     +.|.+
T Consensus       192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~--------~~PdGl~vD~~G~-----l~Va~~~~-----g~V~~  253 (319)
T d2dg1a1         192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--------EGPDSCCIDSDDN-----LYVAMYGQ-----GRVLV  253 (319)
T ss_dssp             EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS--------SEEEEEEEBTTCC-----EEEEEETT-----TEEEE
T ss_pred             EEecccCCceEEEEEcCCCceeccccceeeeccCCc--------cceeeeeEcCCCC-----EEEEEcCC-----CEEEE
Confidence             55566788999998754221111100000000000        0012688888886     66666666     99999


Q ss_pred             EEeecCCCCcceeEeeecC---CCCCCceEEEEEecCC
Q 026295          204 WEFDEAHNRWLPVAELALP---EDRSDEVYAVAWALNI  238 (240)
Q Consensus       204 w~~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~sp~~  238 (240)
                      |+.. ++    ...++..+   .++...+++++|.|+.
T Consensus       254 ~~p~-G~----~l~~i~~P~~~~~~~~~~~~~~~~~~~  286 (319)
T d2dg1a1         254 FNKR-GY----PIGQILIPGRDEGHMLRSTHPQFIPGT  286 (319)
T ss_dssp             ECTT-SC----EEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred             ECCC-Cc----EEEEEeCCCcCCCcCceeeeEEEeCCC
Confidence            9953 32    22222222   2355568899998864

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=0.00038  Score=49.87  Aligned_cols=188  Identities=13%  Similarity=0.082  Sum_probs=97.1

Q ss_pred             hcccccceEEEEECCCCCEEEEEeCC-CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-EEEEEecCCeE
Q 026295            5 VATLDKGTTSSSWNYCGQRLATGSTD-GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-AVACICSDGSL   82 (240)
Q Consensus         5 ~~~h~~~v~~~~~s~~~~~l~~~~~d-~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-~l~s~~~d~~v   82 (240)
                      +..+.+......|+|+|+.++..... +...++.....   ...... ............+++.  +. .+++...++..
T Consensus        78 ~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~  151 (269)
T d2hqsa1          78 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA---SGQIRQ-VTDGRSNNTEPTWFPD--SQNLAFTSDQAGRP  151 (269)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT---TCCEEE-CCCCSSCEEEEEECTT--SSEEEEEECTTSSC
T ss_pred             EeeeecccccceecCCCCeeeEeeecCCccceeecccc---ccccee-eeeccccccccccccc--cccceecccccCCc
Confidence            44566778889999999988876543 33333322211   111122 2223334445566666  54 44445556655


Q ss_pred             EEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC-CcEEEEEecCcccccceeEEeeeecccceee
Q 026295           83 LLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD-GHVKVYELLDPLILKNWQLQAEFQNAIDSVT  161 (240)
Q Consensus        83 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~  161 (240)
                      .+|......      .................|+|  ++..++..+.+ +...+|......    .. ... ........
T Consensus       152 ~i~~~~~~~------~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~----~~-~~~-~~~~~~~~  217 (269)
T d2hqsa1         152 QVYKVNING------GAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLAT----GG-VQV-LSSTFLDE  217 (269)
T ss_dssp             EEEEEETTS------SCCEECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTT----CC-EEE-CCCSSSCE
T ss_pred             eEeeeeccc------ccceeeeccccccccccccc--ccceeEEEeecCCceeeeEeeccc----cc-ceE-eecCcccc
Confidence            555543321      12222233445667788998  88877766544 444555443211    11 111 11111112


Q ss_pred             ccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecC
Q 026295          162 MFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALN  237 (240)
Q Consensus       162 ~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~  237 (240)
                                ...|+|++.     .|+..+...  ....|++++++...     ...+...   ...+...+|||-
T Consensus       218 ----------~p~~SPDG~-----~i~f~s~~~--~~~~l~~~~~dg~~-----~~~lt~~---~g~~~~p~WSP~  268 (269)
T d2hqsa1         218 ----------TPSLAPNGT-----MVIYSSSQG--MGSVLNLVSTDGRF-----KARLPAT---DGQVKFPAWSPY  268 (269)
T ss_dssp             ----------EEEECTTSS-----EEEEEEEET--TEEEEEEEETTSCC-----EEECCCS---SSEEEEEEECCC
T ss_pred             ----------ceEECCCCC-----EEEEEEcCC--CCcEEEEEECCCCC-----EEEEeCC---CCcEEeEEeCCC
Confidence                      678999997     555444321  00356667765533     2223322   237889999994

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=8.6e-06  Score=64.27  Aligned_cols=112  Identities=11%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEe---------cCCeEEE
Q 026295           15 SSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACIC---------SDGSLLL   84 (240)
Q Consensus        15 ~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~---------~d~~v~i   84 (240)
                      ..|.+++.++.. ..+|.|.+|++....   .+.+.... ...-.+....|+|+  +++++...         ..+.+.+
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~SpD--~~~vl~~~~~~~~~r~s~~~~~~i   95 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNT---STVLIEGKKIESLRAIRYEISPD--REYALFSYNVEPIYQHSYTGYYVL   95 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCC---CEEEECTTTTTTTTCSEEEECTT--SSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCC---EEEEEcCccccccccceeEECCC--CCeEEEEEcccceeEeeccccEEE
Confidence            468888876654 456889999997432   12221111 12235678889999  98877653         2467888


Q ss_pred             EEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecC
Q 026295           85 WEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLD  140 (240)
Q Consensus        85 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~  140 (240)
                      +|+..+..     ..+.........+....|||  +|..+|... ++.|.+.+...
T Consensus        96 ~d~~~~~~-----~~l~~~~~~~~~l~~~~wSP--DG~~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1          96 SKIPHGDP-----QSLDPPEVSNAKLQYAGWGP--KGQQLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             EESSSCCC-----EECCCTTCCSCCCSBCCBCS--STTCEEEEE-TTEEEEESSSS
T ss_pred             EEccCCce-----eeccCccCCccccceeeecc--CCceEEEEe-cceEEEEecCC
Confidence            89876532     33322233344566789999  999888876 45677666544

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.17  E-value=0.00011  Score=54.62  Aligned_cols=160  Identities=13%  Similarity=0.157  Sum_probs=90.7

Q ss_pred             eEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCC-----
Q 026295           12 TTSSSWNYCGQRLATGST---------------DGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGD-----   71 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~---------------d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~-----   71 (240)
                      .+.++|+++|++.++-..               +|.|..++...    ....   +...-...+.++|+++  ++     
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg----~~~~---~~~~~~~pNGi~~~~d--~d~~~~~  189 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG----QMIQ---VDTAFQFPNGIAVRHM--NDGRPYQ  189 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS----CEEE---EEEEESSEEEEEEEEC--TTSCEEE
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC----ceeE---eeCCcceeeeeEECCC--CCcceeE
Confidence            567899999988776432               12333333321    1111   1122234568899887  43     


Q ss_pred             EEEEEecCCeEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEE
Q 026295           72 AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQ  150 (240)
Q Consensus        72 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~  150 (240)
                      ++++-+..+.|..|++..... ....+....+.. .......+++..  +|++.++....+.|.+||...      ....
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~-~~~~~~~~~~~~~~~~~pdGiavD~--~GnlyVa~~~~g~I~~~dp~~------g~~~  260 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAK-IENKKVWGHIPGTHEGGADGMDFDE--DNNLLVANWGSSHIEVFGPDG------GQPK  260 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTE-EEEEEEEEECCCCSSCEEEEEEEBT--TCCEEEEEETTTEEEEECTTC------BSCS
T ss_pred             EEEEeecccceEEeeccCccc-cceeeEEEEccccccccceeeEEec--CCcEEEEEcCCCEEEEEeCCC------CEEE
Confidence            444556677888888764311 000011122222 122356789977  898777777888999998765      3333


Q ss_pred             eeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec
Q 026295          151 AEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       151 ~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      ..+........          +++|.|++.    .++++.+..     +.|..+++..
T Consensus       261 ~~i~~p~~~~t----------~~afg~d~~----~lyVt~~~~-----g~i~~~~~~~  299 (314)
T d1pjxa_         261 MRIRCPFEKPS----------NLHFKPQTK----TIFVTEHEN-----NAVWKFEWQR  299 (314)
T ss_dssp             EEEECSSSCEE----------EEEECTTSS----EEEEEETTT-----TEEEEEECSS
T ss_pred             EEEECCCCCEE----------EEEEeCCCC----EEEEEECCC-----CcEEEEECCC
Confidence            33433322233          799998774    255555555     7777777644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=0.0001  Score=58.01  Aligned_cols=114  Identities=11%  Similarity=0.094  Sum_probs=71.4

Q ss_pred             ceEEEEECCCCCEEEEEe---------CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCe
Q 026295           11 GTTSSSWNYCGQRLATGS---------TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGS   81 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~---------~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~   81 (240)
                      .+....||||+++++...         ..+.+.|+|+...   +.+.+.........+....|||+  |+.+|-.. ++.
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~---~~~~l~~~~~~~~~l~~~~wSPD--G~~iafv~-~~n  135 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG---DPQSLDPPEVSNAKLQYAGWGPK--GQQLIFIF-ENN  135 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC---CCEECCCTTCCSCCCSBCCBCSS--TTCEEEEE-TTE
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC---ceeeccCccCCccccceeeeccC--CceEEEEe-cce
Confidence            566788999999887764         3467888998743   22333333333455667899999  99887764 667


Q ss_pred             EEEEEeeeccCCCcccEEEEEe-eeccc-----------------cEEeEEEeecCCCcEEEEEeC-CCcEEEEEec
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSF-ESTST-----------------QVLDVQFGVSSTSLKLVAAYS-DGHVKVYELL  139 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~-~~~~~-----------------~v~~~~~~~~~~~~~l~~~~~-dg~v~iw~~~  139 (240)
                      |.+.+...+.       ..+.. .+...                 .-..+-|||  +|++||.... +..|..+.+.
T Consensus       136 l~~~~~~~~~-------~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSP--Dgk~iaf~~~D~s~V~~~~~~  203 (465)
T d1xfda1         136 IYYCAHVGKQ-------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELP  203 (465)
T ss_dssp             EEEESSSSSC-------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEEC
T ss_pred             EEEEecCCCc-------eEEEecccCcceeeccccchhhhhhhccccceEEECC--CCCeEEEEEecccccceeecc
Confidence            7777765431       11111 11111                 114677999  9999888763 3456666553

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.11  E-value=6.3e-05  Score=54.29  Aligned_cols=114  Identities=7%  Similarity=-0.076  Sum_probs=74.7

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeee
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIV   89 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~   89 (240)
                      .....++++++++++++-..+..+..++.....    .......+ ......+++.++  +.++++...++.|..++...
T Consensus        98 ~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~----~~~~~~~~-~~~p~~i~~~~~--g~~~v~~~~~~~i~~~d~~~  170 (260)
T d1rwia_          98 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT----QTVLPFTG-LNDPDGVAVDNS--GNVYVTDTDNNRVVKLEAES  170 (260)
T ss_dssp             CSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS----CEECCCCS-CCSCCEEEECTT--CCEEEEEGGGTEEEEECTTT
T ss_pred             eecccccccccceeEeeccccccccccccccce----eeeeeecc-cCCcceeeecCC--CCEeeecccccccccccccc
Confidence            356789999999887776666667777665321    11111111 234568899888  88888877788898888754


Q ss_pred             ccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEec
Q 026295           90 EDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELL  139 (240)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~  139 (240)
                      .       .........-.....+++++  +|.++++....+.|..++..
T Consensus       171 ~-------~~~~~~~~~~~~p~gi~~d~--~g~l~vsd~~~~~i~~~~~~  211 (260)
T d1rwia_         171 N-------NQVVLPFTDITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAG  211 (260)
T ss_dssp             C-------CEEECCCSSCCSEEEEEECT--TCCEEEEETTTTEEEEECTT
T ss_pred             c-------eeeeeeccccCCCccceeee--eeeeeeeecCCCEEEEEeCC
Confidence            3       22111112334567899988  88877777777888777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.04  E-value=0.00054  Score=49.74  Aligned_cols=180  Identities=11%  Similarity=0.113  Sum_probs=104.3

Q ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee------cCccEEEEEEcCCCCCCEEEEE-ecCCeEE
Q 026295           11 GTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV------HAGAILKVVWVPPEFGDAVACI-CSDGSLL   83 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~   83 (240)
                      .-..++++++|+.+++-..+..|++||.+.      +.+..+..      .......+.+... .+..++.. +.++.|.
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~G------~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~i~   96 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKEG------RFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQ   96 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTTS------CEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCCC------CEEEEecccCCCccccccccccccccc-ccccceeccCCccccc
Confidence            357899999999888877788999999763      23333321      1112345555444 13444433 3445666


Q ss_pred             EEEeeeccCCCcccEEEEEee-eccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeec
Q 026295           84 LWEEIVEDAQPLQWKLCKSFE-STSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTM  162 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~  162 (240)
                      .++...        .....+. ........+++.+  ++.++++....+.+.+++..       .+.+..+....     
T Consensus        97 ~~~~~g--------~~~~~~~~~~~~~p~~~avd~--~G~i~v~~~~~~~~~~~~~~-------g~~~~~~g~~~-----  154 (279)
T d1q7fa_          97 IYNQYG--------QFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-------GNVLHKFGCSK-----  154 (279)
T ss_dssp             EECTTS--------CEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-------SCEEEEEECTT-----
T ss_pred             cccccc--------cceeecCCCcccccceecccc--CCcEEEEeeccceeeEeccC-------Cceeecccccc-----
Confidence            666532        4444443 2334567788877  88877777777777777654       34444432211     


Q ss_pred             cccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          163 FRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       163 ~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                         .......+++.+++.     ++++....     +.|++|+....     ....+ ...+.......|++.|++
T Consensus       155 ---~~~~~~~i~~d~~g~-----i~v~d~~~-----~~V~~~d~~G~-----~~~~~-g~~g~~~~P~giavD~~G  211 (279)
T d1q7fa_         155 ---HLEFPNGVVVNDKQE-----IFISDNRA-----HCVKVFNYEGQ-----YLRQI-GGEGITNYPIGVGINSNG  211 (279)
T ss_dssp             ---TCSSEEEEEECSSSE-----EEEEEGGG-----TEEEEEETTCC-----EEEEE-SCTTTSCSEEEEEECTTC
T ss_pred             ---cccccceeeecccee-----EEeeeccc-----cceeeeecCCc-----eeeee-cccccccCCcccccccCC
Confidence               111123677888775     56666655     89999986432     12222 122344456778888776

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.53  E-value=0.0076  Score=43.87  Aligned_cols=183  Identities=11%  Similarity=0.043  Sum_probs=104.3

Q ss_pred             cccceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeee--cCccEEEEEEcCCCCCCEEEEEecC----Ce
Q 026295            8 LDKGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKV--HAGAILKVVWVPPEFGDAVACICSD----GS   81 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~d----~~   81 (240)
                      ....+.++++.++|+++++ +.+ -+.++|....   ..+.+.....  ....++++.+.|+  |.+.++....    +.
T Consensus        57 ~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg---~~~~l~~~~~~~~~~~~nd~~vd~~--G~iw~~~~~~~~~~~~  129 (295)
T d2ghsa1          57 LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATG---VLTLHAELESDLPGNRSNDGRMHPS--GALWIGTMGRKAETGA  129 (295)
T ss_dssp             CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC---CEEEEECSSTTCTTEEEEEEEECTT--SCEEEEEEETTCCTTC
T ss_pred             CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccc---eeeEEeeeecCCCcccceeeEECCC--CCEEEEeccccccccc
Confidence            4557888999889877765 454 4778888733   2333322221  1235788999898  8876664332    24


Q ss_pred             EEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecCcccccc--eeEEeeeecccc
Q 026295           82 LLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLDPLILKN--WQLQAEFQNAID  158 (240)
Q Consensus        82 v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~~~~~~~--~~~~~~~~~~~~  158 (240)
                      -.+|.+..+       +....... -.....++|++  ++..+ ++-+..+.|..|++........  ......+.....
T Consensus       130 g~l~~~~~g-------~~~~~~~~-~~~~Ng~~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g  199 (295)
T d2ghsa1         130 GSIYHVAKG-------KVTKLFAD-ISIPNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKG  199 (295)
T ss_dssp             EEEEEEETT-------EEEEEEEE-ESSEEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSS
T ss_pred             eeEeeecCC-------cEEEEeec-cCCcceeeecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccc
Confidence            456666544       33333332 24457889988  77654 5555677888888753221111  111111111111


Q ss_pred             eeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeecCCCCcceeEeeecCCCCCCceEEEEEe
Q 026295          159 SVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELALPEDRSDEVYAVAWA  235 (240)
Q Consensus       159 ~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s  235 (240)
                      ..          ..++.+.++.     +.++....     +.|..|+.+. +    +...+..+..   .+++++|-
T Consensus       200 ~p----------dG~~vD~~Gn-----lWva~~~~-----g~V~~~dp~G-~----~~~~i~lP~~---~~T~~~FG  248 (295)
T d2ghsa1         200 GM----------DGSVCDAEGH-----IWNARWGE-----GAVDRYDTDG-N----HIARYEVPGK---QTTCPAFI  248 (295)
T ss_dssp             EE----------EEEEECTTSC-----EEEEEETT-----TEEEEECTTC-C----EEEEEECSCS---BEEEEEEE
T ss_pred             cc----------cceEEcCCCC-----EEeeeeCC-----CceEEecCCC-c----EeeEecCCCC---ceEEEEEe
Confidence            12          2677888886     55555555     8899998543 2    2333333333   68889985

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.44  E-value=0.011  Score=43.48  Aligned_cols=146  Identities=8%  Similarity=-0.053  Sum_probs=82.3

Q ss_pred             ceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEE-EEEecCCeEE
Q 026295           11 GTTSSSWNYCGQRLATGSTD------GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAV-ACICSDGSLL   83 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~d~~v~   83 (240)
                      ....++++++|++.++....      +.+..++....   .   +..+...-...+.++|+|+  ++.| ++-+..+.|.
T Consensus       131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~---~---~~~~~~~~~~pnGia~s~d--g~~lyvad~~~~~I~  202 (319)
T d2dg1a1         131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR---T---VTPIIQNISVANGIALSTD--EKVLWVTETTANRLH  202 (319)
T ss_dssp             CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC---C---EEEEEEEESSEEEEEECTT--SSEEEEEEGGGTEEE
T ss_pred             CCcceeEEeccceeecccccccccCcceeEEEecccc---e---eEEEeeccceeeeeeeccc--cceEEEecccCCceE
Confidence            46678899999876664321      22433433321   1   1222222334678999999  8755 4445678899


Q ss_pred             EEEeeeccCCCcccEEE-EE---eeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccce
Q 026295           84 LWEEIVEDAQPLQWKLC-KS---FESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDS  159 (240)
Q Consensus        84 iwd~~~~~~~~~~~~~~-~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .|++.....   ..... ..   ..........++++.  +|++.++....+.|.+|+..       ++.+.++......
T Consensus       203 ~~d~~~~g~---~~~~~~~~~~~~~~~~~~PdGl~vD~--~G~l~Va~~~~g~V~~~~p~-------G~~l~~i~~P~~~  270 (319)
T d2dg1a1         203 RIALEDDGV---TIQPFGATIPYYFTGHEGPDSCCIDS--DDNLYVAMYGQGRVLVFNKR-------GYPIGQILIPGRD  270 (319)
T ss_dssp             EEEECTTSS---SEEEEEEEEEEECCSSSEEEEEEEBT--TCCEEEEEETTTEEEEECTT-------SCEEEEEECTTGG
T ss_pred             EEEEcCCCc---eeccccceeeeccCCccceeeeeEcC--CCCEEEEEcCCCEEEEECCC-------CcEEEEEeCCCcC
Confidence            998753211   00111 11   111122356789977  99988888888999999964       4555555433221


Q ss_pred             eeccccccceeeeEEEeCCCC
Q 026295          160 VTMFRKASCISASISWNPQKG  180 (240)
Q Consensus       160 v~~~~~~~~~~~~v~~~p~~~  180 (240)
                      ..    ....+.+++|.|...
T Consensus       271 ~~----~~~~~~~~~~~~~~~  287 (319)
T d2dg1a1         271 EG----HMLRSTHPQFIPGTN  287 (319)
T ss_dssp             GT----CSCBCCEEEECTTSC
T ss_pred             CC----cCceeeeEEEeCCCC
Confidence            10    111223788988765

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.51  E-value=0.08  Score=38.18  Aligned_cols=150  Identities=10%  Similarity=-0.003  Sum_probs=88.5

Q ss_pred             ceEEEEECCCCCEEEEEeCC----CcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEE
Q 026295           11 GTTSSSWNYCGQRLATGSTD----GTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLW   85 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~~d----~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iw   85 (240)
                      .++.+.++|+|++.++....    +.-.+|.+..     .+....... -...+.+.|+++  +..+. +-+..+.|..+
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~-----g~~~~~~~~-~~~~Ng~~~s~d--~~~l~~~dt~~~~I~~~  175 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK-----GKVTKLFAD-ISIPNSICFSPD--GTTGYFVDTKVNRLMRV  175 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET-----TEEEEEEEE-ESSEEEEEECTT--SCEEEEEETTTCEEEEE
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeecC-----CcEEEEeec-cCCcceeeecCC--CceEEEeecccceeeEe
Confidence            57788899999877665432    2345565542     222222222 334678999998  77554 44556788888


Q ss_pred             EeeeccCC-CcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccc
Q 026295           86 EEIVEDAQ-PLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFR  164 (240)
Q Consensus        86 d~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~  164 (240)
                      ++...... .........+.+.......++++.  +|++.++.-..+.|..||..       ++.+..+......++   
T Consensus       176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~--~GnlWva~~~~g~V~~~dp~-------G~~~~~i~lP~~~~T---  243 (295)
T d2ghsa1         176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTD-------GNHIARYEVPGKQTT---  243 (295)
T ss_dssp             EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT--TSCEEEEEETTTEEEEECTT-------CCEEEEEECSCSBEE---
T ss_pred             eecccccccccceEEEeccCcccccccceEEcC--CCCEEeeeeCCCceEEecCC-------CcEeeEecCCCCceE---
Confidence            87532111 001122223333445678888877  88877776677889999964       466666655444444   


Q ss_pred             cccceeeeEEEe-CCCCCCCCceEEEEe
Q 026295          165 KASCISASISWN-PQKGENQGSSFVLGF  191 (240)
Q Consensus       165 ~~~~~~~~v~~~-p~~~~~~~~~l~~~~  191 (240)
                             +++|- |+..    .+++|..
T Consensus       244 -------~~~FGG~d~~----~LyvTta  260 (295)
T d2ghsa1         244 -------CPAFIGPDAS----RLLVTSA  260 (295)
T ss_dssp             -------EEEEESTTSC----EEEEEEB
T ss_pred             -------EEEEeCCCCC----EEEEEEC
Confidence                   78885 4443    2555543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.42  E-value=0.02  Score=40.51  Aligned_cols=95  Identities=15%  Similarity=0.123  Sum_probs=57.4

Q ss_pred             EECCC--CCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEec-CC---e--EEEEEe
Q 026295           16 SWNYC--GQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICS-DG---S--LLLWEE   87 (240)
Q Consensus        16 ~~s~~--~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d~---~--v~iwd~   87 (240)
                      ..+|+  |+++|-.+. +.|.+.|+...     +. ..+..+.+.+....|||+  |+.|+.... ++   .  |.+.+.
T Consensus         5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g-----~~-~~Lt~~~~~~~~p~~SPD--G~~iaf~~~~~~~~~~~~i~~~~~   75 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCC-DDLWEHDLKSG-----ST-RKIVSNLGVINNARFFPD--GRKIAIRVMRGSSLNTADLYFYNG   75 (281)
T ss_dssp             CEEEEEETTEEEEEET-TEEEEEETTTC-----CE-EEEECSSSEEEEEEECTT--SSEEEEEEEESTTCCEEEEEEEET
T ss_pred             ccCCCCCCCEEEEEeC-CcEEEEECCCC-----CE-EEEecCCCcccCEEECCC--CCEEEEEEeeCCCCCceEEEEEEe
Confidence            35788  998887654 67888888743     22 234455677889999999  998875432 22   2  444444


Q ss_pred             eeccCCCcccEEEEE--ee----eccccEEeEEEeecCCCcEEEEEe
Q 026295           88 IVEDAQPLQWKLCKS--FE----STSTQVLDVQFGVSSTSLKLVAAY  128 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~--~~----~~~~~v~~~~~~~~~~~~~l~~~~  128 (240)
                      ..+       ...+.  ..    ..........|+|  +|+.++...
T Consensus        76 ~~g-------~~~~lt~~~~~~~~~~~~~~~~~~sp--dg~~l~~~~  113 (281)
T d1k32a2          76 ENG-------EIKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTD  113 (281)
T ss_dssp             TTT-------EEEECCCCCEEEETTEECSEEEEECT--TCCEEEEEC
T ss_pred             cCC-------ceEEeeecCCCccCccccccccccCC--CCCEEEEEE
Confidence            332       22211  11    1223446778988  888777653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.37  E-value=0.087  Score=36.97  Aligned_cols=69  Identities=7%  Similarity=-0.002  Sum_probs=41.1

Q ss_pred             hhcccccceEEEEECCCCCEEEEEeC-CC-----cEEEEeCCCCCCCcEEEEeEee----ecCccEEEEEEcCCCCCCEE
Q 026295            4 AVATLDKGTTSSSWNYCGQRLATGST-DG-----TLSIFDSPDPSSSSFTCNLKTK----VHAGAILKVVWVPPEFGDAV   73 (240)
Q Consensus         4 ~~~~h~~~v~~~~~s~~~~~l~~~~~-d~-----~i~iw~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l   73 (240)
                      .|..+.+.+...+|||||++||-... ++     .|.+++....   ....+....    ..........|+|+  |+.+
T Consensus        35 ~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g---~~~~lt~~~~~~~~~~~~~~~~~~spd--g~~l  109 (281)
T d1k32a2          35 KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG---EIKRITYFSGKSTGRRMFTDVAGFDPD--GNLI  109 (281)
T ss_dssp             EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT---EEEECCCCCEEEETTEECSEEEEECTT--CCEE
T ss_pred             EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC---ceEEeeecCCCccCccccccccccCCC--CCEE
Confidence            35556677888999999999886542 22     2555565532   222221111    11223567889999  9888


Q ss_pred             EEEe
Q 026295           74 ACIC   77 (240)
Q Consensus        74 ~s~~   77 (240)
                      +...
T Consensus       110 ~~~~  113 (281)
T d1k32a2         110 ISTD  113 (281)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.29  E-value=0.055  Score=40.31  Aligned_cols=116  Identities=13%  Similarity=0.007  Sum_probs=72.3

Q ss_pred             eEEEEECCCCCEEEEEeCCC-----------cEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecC
Q 026295           12 TTSSSWNYCGQRLATGSTDG-----------TLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSD   79 (240)
Q Consensus        12 v~~~~~s~~~~~l~~~~~d~-----------~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d   79 (240)
                      +.......+|+.++.|+.+.           .+.+||....   ++....... .|........+.++  +.+++.|+.+
T Consensus        22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---~w~~~~~~~~~~~~~~~~~~~~~~--g~i~v~Gg~~   96 (387)
T d1k3ia3          22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---IVSDRTVTVTKHDMFCPGISMDGN--GQIVVTGGND   96 (387)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---CBCCCEEEECSCCCSSCEEEECTT--SCEEEECSSS
T ss_pred             cEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCC---cEeecCCCCCCcccceeEEEEecC--CcEEEeecCC
Confidence            33444556888888887531           3678998744   444333322 23333345677788  8988888765


Q ss_pred             -CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC------CcEEEEEecC
Q 026295           80 -GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD------GHVKVYELLD  140 (240)
Q Consensus        80 -~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iw~~~~  140 (240)
                       ..+.+||..+.     .|.....+...+.. ...+..+  ++.+++.++.+      ..+.+||+.+
T Consensus        97 ~~~~~~yd~~~~-----~w~~~~~~~~~r~~-~~~~~~~--dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3          97 AKKTSLYDSSSD-----SWIPGPDMQVARGY-QSSATMS--DGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             TTCEEEEEGGGT-----EEEECCCCSSCCSS-CEEEECT--TSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             CcceeEecCccC-----cccccccccccccc-cceeeec--CCceeeeccccccccccceeeeecCCC
Confidence             47999998763     45554444433222 3455555  88888887643      3588999876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.37  E-value=0.53  Score=34.62  Aligned_cols=122  Identities=10%  Similarity=0.046  Sum_probs=68.1

Q ss_pred             EEEEEEcCCCCCCEEEEEecCC-----------eEEEEEeeeccCCCcccEEEEEeee-ccccEEeEEEeecCCCcEEEE
Q 026295           59 ILKVVWVPPEFGDAVACICSDG-----------SLLLWEEIVEDAQPLQWKLCKSFES-TSTQVLDVQFGVSSTSLKLVA  126 (240)
Q Consensus        59 v~~~~~~~~~~~~~l~s~~~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~  126 (240)
                      +.......+  |++++.|+.+.           .+.+||..++     .|........ +.......++.+  ++.+++.
T Consensus        22 ~~~a~~~~~--gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-----~w~~~~~~~~~~~~~~~~~~~~~--~g~i~v~   92 (387)
T d1k3ia3          22 AAAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-----IVSDRTVTVTKHDMFCPGISMDG--NGQIVVT   92 (387)
T ss_dssp             SEEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTC-----CBCCCEEEECSCCCSSCEEEECT--TSCEEEE
T ss_pred             cEEEEEeeC--CEEEEEEeecCcccCCCCCceeEEEEEECCCC-----cEeecCCCCCCcccceeEEEEec--CCcEEEe
Confidence            333334345  78777777421           3668888753     4554433332 222334556767  8998888


Q ss_pred             EeCC-CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCC-CCCCCeEEEE
Q 026295          127 AYSD-GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSD-TPQLNSSKVW  204 (240)
Q Consensus       127 ~~~d-g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd-~~~~~~i~iw  204 (240)
                      |+.+ ..+.+||..+.    .|.....+..... -.          ..+..+++.     +++.|+..+ ......+.+|
T Consensus        93 Gg~~~~~~~~yd~~~~----~w~~~~~~~~~r~-~~----------~~~~~~dG~-----v~v~GG~~~~~~~~~~v~~y  152 (387)
T d1k3ia3          93 GGNDAKKTSLYDSSSD----SWIPGPDMQVARG-YQ----------SSATMSDGR-----VFTIGGSWSGGVFEKNGEVY  152 (387)
T ss_dssp             CSSSTTCEEEEEGGGT----EEEECCCCSSCCS-SC----------EEEECTTSC-----EEEECCCCCSSSCCCCEEEE
T ss_pred             ecCCCcceeEecCccC----ccccccccccccc-cc----------ceeeecCCc-----eeeeccccccccccceeeee
Confidence            7655 58999998762    2433322211110 01          455666765     778877542 1222568888


Q ss_pred             EeecC
Q 026295          205 EFDEA  209 (240)
Q Consensus       205 ~~~~~  209 (240)
                      |..+.
T Consensus       153 d~~~~  157 (387)
T d1k3ia3         153 SPSSK  157 (387)
T ss_dssp             ETTTT
T ss_pred             cCCCC
Confidence            87654

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.62  E-value=1.2  Score=31.95  Aligned_cols=107  Identities=19%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCC
Q 026295           14 SSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ   93 (240)
Q Consensus        14 ~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~   93 (240)
                      +.-.+|..+.||.-+. .+++|||++     +-+.+..+.- ..+|..-+|-.+   +.|+-.+ +..|.-|+++.. . 
T Consensus        67 sAIMhP~~~IiALrag-~~LQiFnle-----tK~klks~~~-~e~VvfWkWis~---~~L~lVT-~taVYHW~~~g~-s-  133 (327)
T d1utca2          67 SAIMNPASKVIALKAG-KTLQIFNIE-----MKSKMKAHTM-TDDVTFWKWISL---NTVALVT-DNAVYHWSMEGE-S-  133 (327)
T ss_dssp             EEEECSSSSEEEEEET-TEEEEEETT-----TTEEEEEEEC-SSCCCEEEESSS---SEEEEEC-SSEEEEEESSSS-C-
T ss_pred             hhhcCCCCcEEEEecC-CeEEEEehh-----HhhhhceEEc-CCCcEEEEecCC---CEEEEEc-CCceEEEcccCC-C-
Confidence            3445788888888764 689999998     4455655553 457888899664   5455443 568999998543 2 


Q ss_pred             CcccEEEEEeeecc----ccEEeEEEeecCCCcEEEEEe---C----CCcEEEEEec
Q 026295           94 PLQWKLCKSFESTS----TQVLDVQFGVSSTSLKLVAAY---S----DGHVKVYELL  139 (240)
Q Consensus        94 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~l~~~~---~----dg~v~iw~~~  139 (240)
                          .+...|..|.    ..|-.-..++  +.++++..+   .    .|.+.+|..+
T Consensus       134 ----~P~k~fdR~~~L~~~QIInY~~d~--~~kW~~l~GI~~~~~~i~G~mQLYS~e  184 (327)
T d1utca2         134 ----QPVKMFDRHSSLAGCQIINYRTDA--KQKWLLLTGISAQQNRVVGAMQLYSVD  184 (327)
T ss_dssp             ----CCEEEEECCGGGTTCEEEEEEECT--TSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred             ----CchhhhhhcccccCceEEEEEECC--CCCEEEEEeEecCCCceeEEEEEEEec
Confidence                4555555432    2343333444  666654433   2    2566777664

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.22  E-value=1.7  Score=32.82  Aligned_cols=83  Identities=8%  Similarity=0.039  Sum_probs=48.2

Q ss_pred             cEEeEEEeecCCCcEEEEEe-CCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceE
Q 026295          109 QVLDVQFGVSSTSLKLVAAY-SDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSF  187 (240)
Q Consensus       109 ~v~~~~~~~~~~~~~l~~~~-~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l  187 (240)
                      ....+..+|  +|+++++++ .+.+|.|+|+++-...-...    + .....+.............+|+..+.     ..
T Consensus       276 sPHGV~vSP--DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~----~-~~~~~~~~e~elglgPLht~fd~~g~-----ay  343 (459)
T d1fwxa2         276 NPHGCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDAVFYEN----A-DPRSAVVAEPELGLGPLHTAFDGRGN-----AY  343 (459)
T ss_dssp             SCCCEEECT--TSSEEEEECTTSSBEEEEEGGGHHHHHHSC----C--GGGGEEECCBCCSCEEEEEECTTSE-----EE
T ss_pred             CCCceEECC--CCCEEEEeCCcCCcEEEEEehhhhhhhccc----C-CccccEEeecccCcCccccccCCCce-----EE
Confidence            346788988  999877665 78899999997532211000    0 00111111111122223667887764     55


Q ss_pred             EEEecCCCCCCCeEEEEEeec
Q 026295          188 VLGFNSDTPQLNSSKVWEFDE  208 (240)
Q Consensus       188 ~~~~~dd~~~~~~i~iw~~~~  208 (240)
                      .+-.-|     ..|--|++..
T Consensus       344 tslfid-----s~v~kw~~~~  359 (459)
T d1fwxa2         344 TSLFLD-----SQVVKWNIED  359 (459)
T ss_dssp             EEETTT-----TEEEEEEHHH
T ss_pred             EEeecc-----ceEEEEecch
Confidence            666666     9999999853

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.04  E-value=1.3  Score=30.95  Aligned_cols=106  Identities=8%  Similarity=-0.028  Sum_probs=57.1

Q ss_pred             EEEEEeCCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEEEE-ecCCeEEEEEeeeccCCCcccEEEE
Q 026295           23 RLATGSTDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVACI-CSDGSLLLWEEIVEDAQPLQWKLCK  101 (240)
Q Consensus        23 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~  101 (240)
                      +|+-+.. +.|+-.+++............+..+...+..|+|.+.  .+.+... ..++.|...++...       ....
T Consensus         3 fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~--~~~iywsd~~~~~I~~~~l~g~-------~~~~   72 (263)
T d1npea_           3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV--DKVVYWTDISEPSIGRASLHGG-------EPTT   72 (263)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT--TTEEEEEETTTTEEEEEESSSC-------CCEE
T ss_pred             EEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeC--CCEEEEEECCCCeEEEEEcccC-------CcEE
Confidence            4444433 4666666654321111111222333445778889876  6655554 44567877777543       2222


Q ss_pred             EeeeccccEEeEEEeecCCCcEE-EEEeCCCcEEEEEecC
Q 026295          102 SFESTSTQVLDVQFGVSSTSLKL-VAAYSDGHVKVYELLD  140 (240)
Q Consensus       102 ~~~~~~~~v~~~~~~~~~~~~~l-~~~~~dg~v~iw~~~~  140 (240)
                      .+......+..++++.  -+..| .+-...+.|.+.++..
T Consensus        73 v~~~~~~~p~~iAvD~--~~~~lY~~d~~~~~I~~~~~dg  110 (263)
T d1npea_          73 IIRQDLGSPEGIALDH--LGRTIFWTDSQLDRIEVAKMDG  110 (263)
T ss_dssp             EECTTCCCEEEEEEET--TTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEeccccccEEEEec--cCCeEEEeccCCCEEEEEecCC
Confidence            2222234678888875  44444 4445567888888764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=91.13  E-value=2.3  Score=32.11  Aligned_cols=96  Identities=9%  Similarity=-0.022  Sum_probs=56.8

Q ss_pred             CCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEee-ecCccEEEEEEcCCCCCCEEEEEecCC-----------------
Q 026295           20 CGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTK-VHAGAILKVVWVPPEFGDAVACICSDG-----------------   80 (240)
Q Consensus        20 ~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d~-----------------   80 (240)
                      ||++|+... .+..|-+-|++     +.+....+. .....+..+...+...-.+++..+.+.                 
T Consensus        98 DGrylFVNDkan~RVAvIdl~-----~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~  172 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCD-----VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV  172 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETT-----TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred             ceeEEEEEcCCCceEEEEECc-----ceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence            788877776 56788899998     555544332 123456666665442245776665532                 


Q ss_pred             -eEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCC
Q 026295           81 -SLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        81 -~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                       .+...|..+.       +....+.- ......+.++|  +|+++++.+.+
T Consensus       173 ~~~t~ID~~tm-------~V~~QV~V-~g~ld~~~~s~--dGK~af~TsyN  213 (459)
T d1fwxa2         173 NVFTAVDADKW-------EVAWQVLV-SGNLDNCDADY--EGKWAFSTSYN  213 (459)
T ss_dssp             EEEEEEETTTT-------EEEEEEEE-SSCCCCEEECS--SSSEEEEEESC
T ss_pred             eEEEEEecCCc-------eEEEEeee-CCChhccccCC--CCCEEEEEecc
Confidence             2344555433       43333332 23456788988  99988877643

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.77  E-value=1.3  Score=33.35  Aligned_cols=103  Identities=10%  Similarity=0.072  Sum_probs=56.4

Q ss_pred             ceEEEEECCCCCEEEEEe-CC----CcEEEEeCCCCCCCcEEEEe-EeeecCccEEEEEEcCCCCCCEEEEEecC-----
Q 026295           11 GTTSSSWNYCGQRLATGS-TD----GTLSIFDSPDPSSSSFTCNL-KTKVHAGAILKVVWVPPEFGDAVACICSD-----   79 (240)
Q Consensus        11 ~v~~~~~s~~~~~l~~~~-~d----~~i~iw~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----   79 (240)
                      .+..+++||+++++|-+- .+    ..|+++|+.     +++.+. .+..  .....+.|.++  +..|+-...+     
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~-----tg~~~~~~i~~--~~~~~~~W~~D--~~~~~Y~~~~~~~~~  196 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVD-----GAKELPDVLER--VKFSCMAWTHD--GKGMFYNAYPQQDGK  196 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETT-----TTEEEEEEEEE--ECSCCEEECTT--SSEEEEEECCCCSSC
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccC-----cceeccccccc--ccccceEEcCC--CCEEEEEEeccccCc
Confidence            345678899999888542 23    369999998     444433 2221  22356899998  8766544322     


Q ss_pred             -----------CeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE
Q 026295           80 -----------GSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA  127 (240)
Q Consensus        80 -----------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~  127 (240)
                                 ..|..+.+.+...  .. ..+.........+..+..+.  ++++++..
T Consensus       197 ~~~~~~~~~~~~~v~~h~lgt~~~--~d-~~v~~e~d~~~~~~~~~~s~--d~~~l~i~  250 (430)
T d1qfma1         197 SDGTETSTNLHQKLYYHVLGTDQS--ED-ILCAEFPDEPKWMGGAELSD--DGRYVLLS  250 (430)
T ss_dssp             CSSSCCCCCCCCEEEEEETTSCGG--GC-EEEECCTTCTTCEEEEEECT--TSCEEEEE
T ss_pred             ccccccccCCcceEEEEECCCCcc--cc-ccccccccCCceEEeeeccC--CcceeeEE
Confidence                       2455665533211  00 12222222223455566666  88876543

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.33  E-value=5.4  Score=31.11  Aligned_cols=53  Identities=9%  Similarity=0.092  Sum_probs=32.8

Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      .+.++++++.||.++-+|.++      ++.+-++........         .-+.|..++.    +||++..
T Consensus       468 agglVF~G~~dg~l~A~Da~t------Ge~LW~~~l~~~~~~---------~P~ty~~dGk----qyv~v~a  520 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADK------GEALWQFEAQSGIVA---------APMTFELAGR----QYVAIMA  520 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCS---------CCEEEEETTE----EEEEEEE
T ss_pred             CCCEEEEECCCCcEEEEECCC------CcEeEEEECCCCccc---------cCEEEEECCE----EEEEEEe
Confidence            455677899999999999998      455555443221111         1456766664    3666544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.86  E-value=3.5  Score=28.56  Aligned_cols=116  Identities=6%  Similarity=-0.076  Sum_probs=65.3

Q ss_pred             cccceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCCCCcEEEEeEeeecCccEEEEEEcCCCCCCEEE-EEecCCeEEEE
Q 026295            8 LDKGTTSSSWNYCGQRLATGS-TDGTLSIFDSPDPSSSSFTCNLKTKVHAGAILKVVWVPPEFGDAVA-CICSDGSLLLW   85 (240)
Q Consensus         8 h~~~v~~~~~s~~~~~l~~~~-~d~~i~iw~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~d~~v~iw   85 (240)
                      +...+..++|++..++|.-.. .++.|+..++....   .+.+  +..-...+..+++...  +..|. +-...+.|.+.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~---~~~v--~~~~~~~p~~iAvD~~--~~~lY~~d~~~~~I~~~  106 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---PTTI--IRQDLGSPEGIALDHL--GRTIFWTDSQLDRIEVA  106 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC---CEEE--ECTTCCCEEEEEEETT--TTEEEEEETTTTEEEEE
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCC---cEEE--EEeccccccEEEEecc--CCeEEEeccCCCEEEEE
Confidence            334577889998877766654 45778887876432   1111  2222245778888665  55554 44456688888


Q ss_pred             EeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEE-eCCCcEEEEEec
Q 026295           86 EEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAA-YSDGHVKVYELL  139 (240)
Q Consensus        86 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~-~~dg~v~iw~~~  139 (240)
                      ++...       .....+.........++++|  ...++.-. ...+..+|+...
T Consensus       107 ~~dg~-------~~~~l~~~~l~~p~~l~vdp--~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_         107 KMDGT-------QRRVLFDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             ETTSC-------SCEEEECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEE
T ss_pred             ecCCc-------eEEEEecccccCCcEEEEec--ccCcEEEeecCCCCcEEEEec
Confidence            87643       21112222235678899988  55444433 222334455443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=86.75  E-value=4.4  Score=29.58  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=49.3

Q ss_pred             cEEEEEE--cCCCCCC-EEEEEecCCeEEEEEeeeccCCCcccEEEEEeeeccccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295           58 AILKVVW--VPPEFGD-AVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTSTQVLDVQFGVSSTSLKLVAAYSDGHVK  134 (240)
Q Consensus        58 ~v~~~~~--~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~  134 (240)
                      .++.+|+  ++. .+. +++....+|.+..|.+..........+.++.+... ..+..+.+++  ....|..+-.+.-|.
T Consensus       129 ~vYGlc~y~~~~-~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~q~EGCVvDd--e~~~LyisEE~~Giw  204 (353)
T d1h6la_         129 EVYGFSLYHSQK-TGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-SQTEGMAADD--EYGSLYIAEEDEAIW  204 (353)
T ss_dssp             SCCCEEEEECTT-TCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-SCEEEEEEET--TTTEEEEEETTTEEE
T ss_pred             cceEEEEEecCC-CCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-CccceEEEeC--CCCcEEEecCccceE
Confidence            4677776  554 244 55666778999999886543222334666777643 5788888987  667788887765444


Q ss_pred             EEEe
Q 026295          135 VYEL  138 (240)
Q Consensus       135 iw~~  138 (240)
                      .++.
T Consensus       205 ~~~a  208 (353)
T d1h6la_         205 KFSA  208 (353)
T ss_dssp             EEES
T ss_pred             EEEe
Confidence            4443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.49  E-value=2.8  Score=28.94  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=22.1

Q ss_pred             eEEEEecCCCCCCCeEEEEEeecCCCCcceeEeee
Q 026295          186 SFVLGFNSDTPQLNSSKVWEFDEAHNRWLPVAELA  220 (240)
Q Consensus       186 ~l~~~~~dd~~~~~~i~iw~~~~~~~~~~~~~~~~  220 (240)
                      +++.|+.+.......|.+||+.+.  .|.....++
T Consensus       245 l~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p  277 (288)
T d1zgka1         245 IYVLGGYDGHTFLDSVECYDPDTD--TWSEVTRMT  277 (288)
T ss_dssp             EEEECCBCSSCBCCEEEEEETTTT--EEEEEEECS
T ss_pred             EEEEecCCCCeecceEEEEECCCC--EEEECCCCC
Confidence            778887764444456788887764  487776654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.40  E-value=7  Score=30.58  Aligned_cols=53  Identities=15%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      .+.++++++.||.++-+|.++      ++.+-++........         .-+.|..++.    +|+++..
T Consensus       496 agglVF~Gt~dg~l~A~Da~T------Ge~LW~~~~~~~~~~---------~P~ty~~~G~----qYv~i~a  548 (582)
T d1flga_         496 AGNLVFTGTGDGYFKAFDAKS------GKELWKFQTGSGIVS---------PPITWEQDGE----QYLGVTV  548 (582)
T ss_dssp             TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCS---------CCEEEEETTE----EEEEEEE
T ss_pred             cCCeEEEeCCCCeEEEEECCC------CcEeEEEECCCCccc---------cCEEEEECCE----EEEEEEe
Confidence            556677899999999999998      565555543322111         1467777774    3665543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.38  E-value=6  Score=29.84  Aligned_cols=55  Identities=13%  Similarity=0.154  Sum_probs=38.2

Q ss_pred             cceEEEEECCCCCEEEEEeCCCcEEEEeCCCCCCCcEEEEeEee------ecCccEEEEEEcCC
Q 026295           10 KGTTSSSWNYCGQRLATGSTDGTLSIFDSPDPSSSSFTCNLKTK------VHAGAILKVVWVPP   67 (240)
Q Consensus        10 ~~v~~~~~s~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~   67 (240)
                      +.-++|+|.|+|++|++--..|.|++++....   ..+.+..+.      .-++....|++.|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g---~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESG---SVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTC---CEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCC---cEeecccCCccccccCCCCceeeEEeCCC
Confidence            35679999999998888766799999987643   333333332      11355789999885

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=83.81  E-value=8.2  Score=30.09  Aligned_cols=29  Identities=14%  Similarity=0.084  Sum_probs=22.4

Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeee
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQ  154 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~  154 (240)
                      .+.++++++.||.++.+|.++      ++.+-++.
T Consensus       487 agglVF~G~~dg~l~A~Da~T------Ge~LW~~~  515 (573)
T d1kb0a2         487 AGNVVFQGTADGRLVAYHAAT------GEKLWEAP  515 (573)
T ss_dssp             TTTEEEEECTTSEEEEEETTT------CCEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCC------CcEeEEEE
Confidence            456677899999999999998      45555544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.30  E-value=9.5  Score=29.73  Aligned_cols=53  Identities=11%  Similarity=0.034  Sum_probs=33.1

Q ss_pred             CCcEEEEEeCCCcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEe
Q 026295          120 TSLKLVAAYSDGHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGF  191 (240)
Q Consensus       120 ~~~~l~~~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~  191 (240)
                      .+.++++++.||.++-+|.++      ++.+-++........         .-+.|..++.    +|+++..
T Consensus       474 agglVf~G~~dg~l~A~Da~t------Ge~lW~~~l~~~~~a---------~P~ty~~dGk----qYi~v~~  526 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKD------GKELWNFKMPSGGIG---------SPMTYSFKGK----QYIGSMY  526 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTT------CCEEEEEECSSCCCS---------CCEEEEETTE----EEEEEEE
T ss_pred             cCCEEEEECCCCeEEEEECCC------CcEEEEEECCCCcee---------cceEEEECCE----EEEEEEe
Confidence            344577899999999999998      555555543321111         1466777774    3665544

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=80.60  E-value=8.9  Score=28.27  Aligned_cols=160  Identities=12%  Similarity=0.124  Sum_probs=78.8

Q ss_pred             cCccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEee----eccccEEeEEEeecCCCcEEEEEeCC
Q 026295           55 HAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFE----STSTQVLDVQFGVSSTSLKLVAAYSD  130 (240)
Q Consensus        55 h~~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~d  130 (240)
                      -.+.|.+|+++|.. .+++..+...+-|  |.-..+   +..|+++....    .....+.+|+++|. +...+..+..+
T Consensus        10 ~gg~~~~i~~~P~~-~~~~ya~~~~gGv--~~S~dg---G~tW~~~~~~~~~~~~~~~~~~~iavdp~-np~~vy~~tg~   82 (427)
T d2ebsa1          10 GGGYITGIVAHPKT-KDLLYARTDIGGA--YRWDAG---TSKWIPLNDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGR   82 (427)
T ss_dssp             BCSCEEEEEECSSS-TTCEEEEESSSCE--EEEETT---TTEEEESCTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECS
T ss_pred             CCCcEEEEEECCCC-CCEEEEEecCCCE--EEEECC---CCceEECCCCCCCCCcccccEeEEEECCC-CCCEEEEEecc
Confidence            35789999999873 4566666665544  332222   36677654322    13346888999984 22344444322


Q ss_pred             ----CcEEEEEecCcccccceeEEeeeecccceeeccccccceeeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEe
Q 026295          131 ----GHVKVYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCISASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEF  206 (240)
Q Consensus       131 ----g~v~iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~  206 (240)
                          ....||-.....  ..|..+.......  ....  .......+..+|....    .|.++..+     +.  ||..
T Consensus        83 ~~~~~~~gi~~S~DgG--~TW~~~~~~~~~~--~~~~--~~~~~~~i~v~P~~~~----~v~~~~~~-----~g--l~~S  145 (427)
T d2ebsa1          83 YVGDEWAAFYVSEDRG--QSFTIYESPFPMG--ANDM--GRNNGERLAVNPFNSN----EVWMGTRT-----EG--IWKS  145 (427)
T ss_dssp             CTTSSCCEEEEESSTT--SEEEEEECSSCCC--TTST--TTTSCCCEEECTTCTT----CEEEECSS-----SC--EEEE
T ss_pred             ccCCcCccEEEeCCCC--ccceeecCCcccC--cccc--CccceeEEEECCCccC----cccccccc-----cc--eeee
Confidence                123466554322  2244332111000  0000  0011226788887642    45556554     43  4555


Q ss_pred             ecCCCCcceeEeeecCCCCCCceEEEEEecCC
Q 026295          207 DEAHNRWLPVAELALPEDRSDEVYAVAWALNI  238 (240)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~  238 (240)
                      ...-..|.....+.........+..+.++|..
T Consensus       146 ~D~G~tW~~~~~~~~~~~~~~~~~~i~~~p~~  177 (427)
T d2ebsa1         146 SDRAKTWTNVTSIPDAFTNGIGYTSVIFDPER  177 (427)
T ss_dssp             SSTTSSCEECTTSSCCCCSSSCEEEEEECTTS
T ss_pred             cCCCceeeecccCcccccCCccceEEEecccc
Confidence            55555565433222222233357778877753

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=80.07  E-value=6.2  Score=26.15  Aligned_cols=149  Identities=10%  Similarity=0.065  Sum_probs=72.6

Q ss_pred             ccEEEEEEcCCCCCCEEEEEecCCeEEEEEeeeccCCCcccEEEEEeeecc--ccEEeEEEeecCCCcEEEEEeCCCcEE
Q 026295           57 GAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQWKLCKSFESTS--TQVLDVQFGVSSTSLKLVAAYSDGHVK  134 (240)
Q Consensus        57 ~~v~~~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~dg~v~  134 (240)
                      ..+.-|.|+|+  |.+.++-.  +  ++|.=.........|-...+..+..  ....-+-|+|  +|.+.+ .+ ++  .
T Consensus        40 ~n~~~i~fsP~--G~LyaVr~--~--~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP--~G~Lya-Vt-~~--~  107 (235)
T d1tl2a_          40 SNFKFLFLSPG--GELYGVLN--D--KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--NGYLYA-VS-KD--K  107 (235)
T ss_dssp             TTCSEEEECTT--SCEEEEET--T--EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--TSCEEE-EE-TT--E
T ss_pred             cceeEEEECCC--CcEEEEEC--C--eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECC--CceEEE-ec-Cc--c
Confidence            34678999999  99877753  3  4443222222223332222222211  2345678888  887444 44 35  5


Q ss_pred             EEEecCcccccceeEEeeeecccceeeccccccce-eeeEEEeCCCCCCCCceEEEEecCCCCCCCeEEEEEeec-CCCC
Q 026295          135 VYELLDPLILKNWQLQAEFQNAIDSVTMFRKASCI-SASISWNPQKGENQGSSFVLGFNSDTPQLNSSKVWEFDE-AHNR  212 (240)
Q Consensus       135 iw~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~v~~~p~~~~~~~~~l~~~~~dd~~~~~~i~iw~~~~-~~~~  212 (240)
                      +|.-.-|.+..    .    .-.......|+..|. ...+-|.|.+.     +.++ -.      ..+.-+.... ....
T Consensus       108 LYr~~pPtn~~----q----~W~g~a~~vG~~gw~df~~lFFdP~G~-----LYaV-~~------~~l~k~~pP~~~~d~  167 (235)
T d1tl2a_         108 LYKASPPQSDT----D----NWIARATEVGSGGWSGFKFLFFHPNGY-----LYAV-HG------QQFYKALPPVSNQDN  167 (235)
T ss_dssp             EEEESCCCSTT----C----CHHHHSEEEECSSGGGEEEEEECTTSC-----EEEE-ET------TEEEEECCCSSTTCC
T ss_pred             eecCCcCcccc----h----hhhhhhhhhccCCcCceeEEEECCCce-----EEEE-EC------CcEEEcCCCCCCCch
Confidence            56543322110    0    000111223334442 23567999995     5555 43      3344444322 2334


Q ss_pred             ccee-EeeecCCCCCCceEEEEEecCCC
Q 026295          213 WLPV-AELALPEDRSDEVYAVAWALNIG  239 (240)
Q Consensus       213 ~~~~-~~~~~~~~h~~~v~~v~~sp~~~  239 (240)
                      |... +.+.  .+|-....-+.|+|++.
T Consensus       168 WL~~st~ig--r~~w~~~~fi~Fs~dG~  193 (235)
T d1tl2a_         168 WLARATKIG--QGGWDTFKFLFFSSVGT  193 (235)
T ss_dssp             HHHHCEEEE--SSSGGGEEEEEECTTSC
T ss_pred             hhhhhhhhc--cCcccCceEEEECCCCc
Confidence            4322 2222  23555678899999985