Citrus Sinensis ID: 026304

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MAASNLKPAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFHKVQSKSCVEAAAAAI
Secondary Structure (PSIPRED)
cccccccccEEEccccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEccccccccEEcccccHHHHHHcHHccccccEEEEcccccccccHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHcccEEEEcEEccccccccccEEEEcccccEEEEcccccEEEccHHHHccccccccHHHHHHccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEccccccccccEEEEccccEEEEEEcccHHHHHHHHHHHHcccccEEEEEcHHHcHHHHHHHHHHHHHcccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHEHcccccEEEEEccccccHHHHHHccccccccHHHccHHHccccccccccccccccc
Coil and Loop (DISEMBL)
maasnlkpaavttnqvnsgrdrvglphrnsgeihvimgpmfagKTTALLRRIRSesdngrniamIKSSKDTRYAIDSvvthdgaklpcwalpelTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDgdylrrsfgsvldiiplADTVTKLTARCELCGKrafftlrkteeteteiiggadvympvCRQHYVNGQVVIGAARNVLEFHKVQSKSCVEAAAAAI
Flexible Loop (DISEMBL)
maasnlkpaavttnqvnsgrdrvglpHRNSGEIHVIMGPMFAGKTTALLRRirsesdngrniamiksskdtryAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGkrafftlrkteeteteiiggadvYMPVCRQHYVNGQVVIGAARNVLEFHKVQSKSCVEAAAAAI
Low Complexity Region (SEG)
MAASNLKPAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKteeteteIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFHKVQSKSCVEAAAAAI
Disordered region (IsUnstruct)
*******************************EIHVIMGPMFAGKTTALLRRI**********AMI***KDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFHKVQS***********
Disordered Region (DISOPRED)
********************************IHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV**************************AAA**
Disordered Region (DISEMBL)
**********VTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFHKVQS***********
Disordered Region (DISPRO)
**************QVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQ****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAASNLKPAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFHKVQSKSCVEAAAAAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
O81263	271	Thymidine kinase OS=Oryza	yes	no	0.816	0.723	0.766	2e-88
P04047	224	Thymidine kinase, cytosol	yes	no	0.733	0.785	0.457	9e-38
P23335	177	Thymidine kinase OS=Swine	yes	no	0.720	0.977	0.441	3e-37
P04184	233	Thymidine kinase, cytosol	yes	no	0.720	0.742	0.462	4e-37
A5D7R8	238	Thymidine kinase, cytosol	yes	no	0.741	0.747	0.464	5e-37
P04183	234	Thymidine kinase, cytosol	yes	no	0.741	0.760	0.459	5e-37
P09768	234	Thymidine kinase, cytosol	yes	no	0.775	0.794	0.456	1e-36
O57203	177	Thymidine kinase OS=Vacci	no	no	0.725	0.983	0.447	2e-35
P68563	177	Thymidine kinase OS=Vacci	no	no	0.729	0.988	0.439	2e-35
P68564	177	Thymidine kinase OS=Vacci	no	no	0.729	0.988	0.439	2e-35

>sp|O81263|KITH_ORYSJ Thymidine kinase OS=Oryza sativa subsp. japonica GN=TK PE=2 SV=2

 Score =  325 bits (833), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 151/197 (76%), Positives = 174/197 (88%), Gaps = 1/197 (0%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89
           GEIHVI+GPMFAGKTTALLRR++ E+  G RN+A+IKS KD RY +DSVVTHDG K+PCW
Sbjct: 67  GEIHVIVGPMFAGKTTALLRRVQVEAGTGSRNVALIKSDKDNRYGLDSVVTHDGTKMPCW 126

Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLR 149
           ALPEL+SF+ KLG +AY K+DVIGIDEAQFF+DL++FCC AAD DGK VVVAGLDGDY R
Sbjct: 127 ALPELSSFQDKLGTEAYDKVDVIGIDEAQFFDDLHDFCCKAADRDGKIVVVAGLDGDYKR 186

Query: 150 RSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV 209
             FGSVLDIIPLAD+VTKLTARCELCG+RAFFTLRKT ET+TE+IGGADVYMPVCRQHY+
Sbjct: 187 NKFGSVLDIIPLADSVTKLTARCELCGRRAFFTLRKTRETKTELIGGADVYMPVCRQHYL 246

Query: 210 NGQVVIGAARNVLEFHK 226
           +GQ+VI A R VL+  K
Sbjct: 247 DGQIVIEATRIVLDLEK 263

Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 1

>sp|P04047|KITH_CHICK Thymidine kinase, cytosolic OS=Gallus gallus GN=TK1 PE=3 SV=1

 Score =  157 bits (396), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 12/188 (6%)

Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P R  G+I VI GPMF+GK+T L+RR+R          ++K +KDTRY    V THD 
Sbjct: 12  GSPGRPRGQIQVIFGPMFSGKSTELMRRVRRFQLAQYRCLLVKYAKDTRYCTTGVSTHDR 71

Query: 84  AKL---PCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVV 140
             +   P  AL ++  +++ LG        VIGIDE QFF D+ EFC   A+  GKTV+V
Sbjct: 72  NTMEARPACALQDV--YQEALGSA------VIGIDEGQFFPDIVEFCEKMAN-TGKTVIV 122

Query: 141 AGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVY 200
           A LDG + R++FGS+L+++PLA++V KL A C  C + A +T R   E E E+IGGAD Y
Sbjct: 123 AALDGTFQRKAFGSILNLVPLAESVVKLNAVCMECYREASYTKRLGAEREVEVIGGADKY 182

Query: 201 MPVCRQHY 208
             VCR  Y
Sbjct: 183 HSVCRACY 190

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P23335|KITH_SWPVK Thymidine kinase OS=Swinepox virus (strain Kasza) GN=TK PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/179 (44%), Positives = 112/179 (62%), Gaps = 6/179 (3%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           G IH+I+GPMF+GK+T L+R +        N  +IK SKD RY  D+V THD   +   +
Sbjct: 4   GFIHLILGPMFSGKSTELIRLVNRYQIATYNCRVIKYSKDNRYGNDAVYTHDKCYISAVS 63

Query: 91  LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRR 150
              L   +  L D     +D++GIDE QFF D+ EFC   A+  GK V+VA LDG Y R+
Sbjct: 64  TDSLFDIKDTLDD-----VDIVGIDEGQFFNDIVEFCEYIANK-GKIVIVAALDGTYERK 117

Query: 151 SFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV 209
            FG++L++IPL++ VTKL A C +C + A F+ R ++E E E+IGG + Y+ VCR  Y+
Sbjct: 118 PFGNILNLIPLSEKVTKLNAICMICHRDASFSKRLSDEKEIELIGGKEKYLSVCRSCYL 176

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P04184|KITH_MOUSE Thymidine kinase, cytosolic OS=Mus musculus GN=Tk1 PE=2 SV=3

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/186 (46%), Positives = 119/186 (63%), Gaps = 13/186 (6%)

Query: 26  PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAK 85
           P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+ +S  THD   
Sbjct: 14  PSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-NSFSTHDRNT 72

Query: 86  ---LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAG 142
              LP   L ++T  ++ LG      + VIGIDE QFF D+ +FC   A+ +GKTV+VA 
Sbjct: 73  MDALPACMLRDVT--QESLG------VAVIGIDEGQFFPDIVDFCEMMAN-EGKTVIVAA 123

Query: 143 LDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMP 202
           LDG + R++FGS+L+++PLA++V KLTA C  C + A +T R   E E E+IGGAD Y  
Sbjct: 124 LDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKYHS 183

Query: 203 VCRQHY 208
           VCR  Y
Sbjct: 184 VCRLCY 189

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|A5D7R8|KITH_BOVIN Thymidine kinase, cytosolic OS=Bos taurus GN=TK1 PE=2 SV=1

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/185 (46%), Positives = 117/185 (63%), Gaps = 7/185 (3%)

Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+     THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQVAQYKCLVIKYAKDTRYS-SLFSTHDR 70

Query: 84  AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
             +   ALP      + +  DA  ++ VIGIDE QFF D+ EFC N A+  GKTV+VA L
Sbjct: 71  NTME--ALP--ACLLRDVIQDA-QRVAVIGIDEGQFFPDIVEFCENMAN-SGKTVIVAAL 124

Query: 144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPV 203
           DG + R++FG++L+++PLA++V KLTA C  C + A +T R   E E E+IGGAD Y  V
Sbjct: 125 DGTFQRKAFGTILNLVPLAESVVKLTAVCMECFREAAYTKRLGVEKEVEVIGGADKYHSV 184

Query: 204 CRQHY 208
           CR  Y
Sbjct: 185 CRLCY 189

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P04183|KITH_HUMAN Thymidine kinase, cytosolic OS=Homo sapiens GN=TK1 PE=1 SV=2

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 115/185 (62%), Gaps = 7/185 (3%)

Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70

Query: 84  AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
             +   ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA L
Sbjct: 71  NTM--EALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 124

Query: 144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPV 203
           DG + R+ FG++L+++PLA++V KLTA C  C + A +T R   E E E+IGGAD Y  V
Sbjct: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSV 184

Query: 204 CRQHY 208
           CR  Y
Sbjct: 185 CRLCY 189

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P09768|KITH_CRIGR Thymidine kinase, cytosolic OS=Cricetulus griseus GN=TK1 PE=3 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 117/197 (59%), Gaps = 11/197 (5%)

Query: 14  NQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRY 73
           N +N      G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY
Sbjct: 2   NYINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQNKCLVIKYAKDTRY 61

Query: 74  AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAA 131
           +  S  THD   +   ALP        L D A   L   VIGIDE QFF D+ EFC    
Sbjct: 62  S-SSFSTHDRNTMD--ALPACL-----LRDVAQEALGAAVIGIDEGQFFPDIVEFC-EVM 112

Query: 132 DHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETET 191
            + GKTV+VA LDG + R++FGS+L+++PLA++V KLTA C  C + A +T R   E E 
Sbjct: 113 ANAGKTVIVAALDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEV 172

Query: 192 EIIGGADVYMPVCRQHY 208
           E+IGGAD Y  VCR  Y
Sbjct: 173 EVIGGADKYHSVCRVCY 189

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|O57203|KITH_VACCA Thymidine kinase OS=Vaccinia virus (strain Ankara) GN=TK PE=1 SV=1

 Score =  149 bits (376), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 106/181 (58%), Gaps = 7/181 (3%)

Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
           N G I +I+GPMF+GK+T L+RR+R           IK S D RY    + THD      
Sbjct: 2   NGGHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYG-TGLWTHDKNNFEA 60

Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148
               +L    + + D       VIGIDE QFF D+ EFC   A+ +GK V+VA LDG + 
Sbjct: 61  LEATKLCDVLESITD-----FSVIGIDEGQFFPDIVEFCERMAN-EGKIVIVAALDGTFQ 114

Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHY 208
           R+ F ++L++IPL++ V KLTA C  C K A F+ R  EETE EIIGG D+Y  VCR+ Y
Sbjct: 115 RKPFNNILNLIPLSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCY 174

Query: 209 V 209
           V
Sbjct: 175 V 175

Phosphorylates thymidine and thymidine analogs, such as azidothymidine (AZT). Part of the salvage pathway for pyrimidine deoxyribonucleotide synthesis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P68563|KITH_VACCW Thymidine kinase OS=Vaccinia virus (strain Western Reserve) GN=TK PE=1 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 107/182 (58%), Gaps = 7/182 (3%)

Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
           N G I +I+GPMF+GK+T L+RR+R           IK S D RY    + THD      
Sbjct: 2   NGGHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYG-TGLWTHDKNNFEA 60

Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148
               +L    + + D       VIGIDE QFF D+ EFC   A+ +GK V+VA LDG + 
Sbjct: 61  LEATKLCDVLESITD-----FSVIGIDEGQFFPDIVEFCERMAN-EGKIVIVAALDGTFQ 114

Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHY 208
           R+ F ++L++IPL++ V KLTA C  C K A F+ R  EETE EIIGG D+Y  VCR+ Y
Sbjct: 115 RKPFNNILNLIPLSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCY 174

Query: 209 VN 210
           ++
Sbjct: 175 ID 176

Phosphorylates thymidine and thymidine analogs, such as azidothymidine (AZT). Part of the salvage pathway for pyrimidine deoxyribonucleotide synthesis.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

>sp|P68564|KITH_VACCC Thymidine kinase OS=Vaccinia virus (strain Copenhagen) GN=TK PE=3 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/182 (43%), Positives = 107/182 (58%), Gaps = 7/182 (3%)

Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
           N G I +I+GPMF+GK+T L+RR+R           IK S D RY    + THD      
Sbjct: 2   NGGHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYG-TGLWTHDKNNFEA 60

Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148
               +L    + + D       VIGIDE QFF D+ EFC   A+ +GK V+VA LDG + 
Sbjct: 61  LEATKLCDVLESITD-----FSVIGIDEGQFFPDIVEFCERMAN-EGKIVIVAALDGTFQ 114

Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHY 208
           R+ F ++L++IPL++ V KLTA C  C K A F+ R  EETE EIIGG D+Y  VCR+ Y
Sbjct: 115 RKPFNNILNLIPLSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCY 174

Query: 209 VN 210
           ++
Sbjct: 175 ID 176

Phosphorylates thymidine and thymidine analogs, such as azidothymidine (AZT). Part of the salvage pathway for pyrimidine deoxyribonucleotide synthesis.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
359485880	234	PREDICTED: thymidine kinase-like [Vitis	0.895	0.918	0.806	1e-100
359497110	283	PREDICTED: thymidine kinase-like [Vitis	0.933	0.791	0.747	3e-97
224068851	196	predicted protein [Populus trichocarpa]	0.816	1.0	0.836	6e-96
255586437	234	thymidine kinase, putative [Ricinus comm	0.875	0.897	0.792	2e-95
449444618	233	PREDICTED: thymidine kinase-like [Cucumi	0.816	0.841	0.801	3e-94
449505149	235	PREDICTED: thymidine kinase-like [Cucumi	0.816	0.834	0.801	4e-94
296084994	202	unnamed protein product [Vitis vinifera]	0.825	0.980	0.82	5e-93
356532644	276	PREDICTED: thymidine kinase-like [Glycin	0.841	0.731	0.787	6e-93
350535573	234	TK1-like deoxyribonucleoside kinase [Sol	0.854	0.876	0.760	2e-92
356557967	279	PREDICTED: thymidine kinase-like [Glycin	0.841	0.724	0.782	2e-91

>gi|359485880|ref|XP_003633348.1| PREDICTED: thymidine kinase-like [Vitis vinifera]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/217 (80%), Positives = 192/217 (88%), Gaps = 2/217 (0%)

Query: 23  VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHD 82
           VG  HR  GE+HVI+GPMFAGKTTALLRRI+SES+NGRN+AMIKSSKDTRYA DS+VTHD
Sbjct: 16  VGSIHRALGEVHVIVGPMFAGKTTALLRRIKSESNNGRNVAMIKSSKDTRYATDSIVTHD 75

Query: 83  GAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAG 142
           G K PCWALP+L+SFRQK G +AY KL+VIGIDEAQFFEDLY+FCC  ADHDGKTV+VAG
Sbjct: 76  GVKFPCWALPDLSSFRQKFGAEAYEKLEVIGIDEAQFFEDLYDFCCEVADHDGKTVIVAG 135

Query: 143 LDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMP 202
           LDGDYLRRSFGSVLD+IPLAD+VTKLTARCELCGKRAFFTLRK EE +TE+IGGAD+YMP
Sbjct: 136 LDGDYLRRSFGSVLDVIPLADSVTKLTARCELCGKRAFFTLRKIEEMQTELIGGADIYMP 195

Query: 203 VCRQHYVNGQVVIGAARNVLEFH--KVQSKSCVEAAA 237
           VCRQHYVNGQ VI AARN LE    KVQS    EAAA
Sbjct: 196 VCRQHYVNGQAVIEAARNALESRKDKVQSDPHPEAAA 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497110|ref|XP_002266298.2| PREDICTED: thymidine kinase-like [Vitis vinifera]

 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/226 (74%), Positives = 197/226 (87%), Gaps = 2/226 (0%)

Query: 4   SNLKPAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIA 63
           S++KP  +++N + S R ++     +SGEIHVI+GPMF+GKTT LLRRI+SE+ NGR +A
Sbjct: 55  SSMKPL-MSSNSIQSRRFQIEASQSSSGEIHVIVGPMFSGKTTTLLRRIQSETSNGRKVA 113

Query: 64  MIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDL 123
           +IKS+KDTRY +DS+VTHDG KLPCWAL +L+SFR+KLG DAY +LDVIGIDEAQFF DL
Sbjct: 114 IIKSNKDTRYGLDSIVTHDGVKLPCWALADLSSFREKLGSDAYDELDVIGIDEAQFFGDL 173

Query: 124 YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTL 183
           YEFCC AADHDGKTV+VAGLDGDYLRRSFGSVLDIIPLAD+VTKLTARCE+CGKRAFFTL
Sbjct: 174 YEFCCKAADHDGKTVIVAGLDGDYLRRSFGSVLDIIPLADSVTKLTARCEICGKRAFFTL 233

Query: 184 RKTEETETEIIGGADVYMPVCRQHYVNGQVVI-GAARNVLEFHKVQ 228
           RKT E +TE+IGGADVYMPVCRQHYV+GQVVI  A R VLE  KVQ
Sbjct: 234 RKTAEKKTELIGGADVYMPVCRQHYVSGQVVIEEATRIVLESQKVQ 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068851|ref|XP_002302841.1| predicted protein [Populus trichocarpa] gi|222844567|gb|EEE82114.1| predicted protein [Populus trichocarpa]

 Score =  356 bits (913), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 164/196 (83%), Positives = 180/196 (91%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           GE+HVI+GPMFAGKTT LLRRI SES +GRN+AMIKSSKDTRYA DSVVTHDG K PCW+
Sbjct: 1   GEVHVIIGPMFAGKTTDLLRRIESESSSGRNVAMIKSSKDTRYANDSVVTHDGLKFPCWS 60

Query: 91  LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRR 150
           LP+LTSF  KLGDD Y KLDVIGIDEAQFFEDLYEFCC AADHDGKT++VAGLDGDYLRR
Sbjct: 61  LPDLTSFHHKLGDDEYHKLDVIGIDEAQFFEDLYEFCCKAADHDGKTIIVAGLDGDYLRR 120

Query: 151 SFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVN 210
           SFGSVLD+IPLADTVTKLTARCELCGKRAFFTLRKT ET+TE+IGG+D+YMPVCRQHYV+
Sbjct: 121 SFGSVLDVIPLADTVTKLTARCELCGKRAFFTLRKTAETQTELIGGSDLYMPVCRQHYVS 180

Query: 211 GQVVIGAARNVLEFHK 226
           GQ VI + RNVLE +K
Sbjct: 181 GQAVIESTRNVLESYK 196

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586437|ref|XP_002533863.1| thymidine kinase, putative [Ricinus communis] gi|223526185|gb|EEF28513.1| thymidine kinase, putative [Ricinus communis]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 168/212 (79%), Positives = 188/212 (88%), Gaps = 2/212 (0%)

Query: 27  HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKL 86
           ++ +GE+HVI+GPMFAGKTTALLRRI SE  NGRN+AMIKSSKDTRYA DSVVTHDG K 
Sbjct: 20  NKPAGEVHVIVGPMFAGKTTALLRRINSEGSNGRNVAMIKSSKDTRYARDSVVTHDGLKF 79

Query: 87  PCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD 146
           PCWALP+L+SFR KLG DAY ++DVIGIDEAQFFEDLY+FC  AADHDGKTV+VAGLDGD
Sbjct: 80  PCWALPDLSSFRDKLGHDAYQRIDVIGIDEAQFFEDLYDFCSKAADHDGKTVIVAGLDGD 139

Query: 147 YLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQ 206
           YLRRSFGSVLD+IPLAD VTKLTARCELCGKRAFFTLRKT ET+TE+IGGAD+YMPVCR+
Sbjct: 140 YLRRSFGSVLDVIPLADNVTKLTARCELCGKRAFFTLRKTAETQTELIGGADMYMPVCRR 199

Query: 207 HYVNGQVVIGAARNVL--EFHKVQSKSCVEAA 236
           HYVNGQVV+ AARNVL  +  K+Q  S  E A
Sbjct: 200 HYVNGQVVMEAARNVLVADSCKLQPDSHAEIA 231

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444618|ref|XP_004140071.1| PREDICTED: thymidine kinase-like [Cucumis sativus]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 157/196 (80%), Positives = 180/196 (91%)

Query: 27  HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKL 86
           HR +GE+HVI+GPMFAGKTTALLRRI+SES++GRN+ MIKSSKDTRYAIDSVVTHDG K 
Sbjct: 24  HRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRYAIDSVVTHDGVKF 83

Query: 87  PCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD 146
           PCWALP+L+SFRQK G+DAY +LDVIG+DEAQFF+DLY+FCCN AD DGK +VVAGLDGD
Sbjct: 84  PCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADRDGKIIVVAGLDGD 143

Query: 147 YLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQ 206
           YLRRSFGSVLD++PLADTVTKLTARCELCGKRAFFTLRKTEET+TE+I GADVYMPVCR 
Sbjct: 144 YLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVYMPVCRH 203

Query: 207 HYVNGQVVIGAARNVL 222
           HY  GQ VI +++N +
Sbjct: 204 HYAIGQEVIQSSKNAM 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505149|ref|XP_004162390.1| PREDICTED: thymidine kinase-like [Cucumis sativus]

 Score =  350 bits (897), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 157/196 (80%), Positives = 180/196 (91%)

Query: 27  HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKL 86
           HR +GE+HVI+GPMFAGKTTALLRRI+SES++GRN+ MIKSSKDTRYAIDSVVTHDG K 
Sbjct: 24  HRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRYAIDSVVTHDGVKF 83

Query: 87  PCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD 146
           PCWALP+L+SFRQK G+DAY +LDVIG+DEAQFF+DLY+FCCN AD DGK +VVAGLDGD
Sbjct: 84  PCWALPDLSSFRQKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADRDGKIIVVAGLDGD 143

Query: 147 YLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQ 206
           YLRRSFGSVLD++PLADTVTKLTARCELCGKRAFFTLRKTEET+TE+I GADVYMPVCR 
Sbjct: 144 YLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTLRKTEETKTELIAGADVYMPVCRH 203

Query: 207 HYVNGQVVIGAARNVL 222
           HY  GQ VI +++N +
Sbjct: 204 HYAIGQEVIQSSKNAM 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084994|emb|CBI28409.3| unnamed protein product [Vitis vinifera]

 Score =  346 bits (888), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 164/200 (82%), Positives = 179/200 (89%), Gaps = 2/200 (1%)

Query: 40  MFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ 99
           MFAGKTTALLRRI+SES+NGRN+AMIKSSKDTRYA DS+VTHDG K PCWALP+L+SFRQ
Sbjct: 1   MFAGKTTALLRRIKSESNNGRNVAMIKSSKDTRYATDSIVTHDGVKFPCWALPDLSSFRQ 60

Query: 100 KLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDII 159
           K G +AY KL+VIGIDEAQFFEDLY+FCC  ADHDGKTV+VAGLDGDYLRRSFGSVLD+I
Sbjct: 61  KFGAEAYEKLEVIGIDEAQFFEDLYDFCCEVADHDGKTVIVAGLDGDYLRRSFGSVLDVI 120

Query: 160 PLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAAR 219
           PLAD+VTKLTARCELCGKRAFFTLRK EE +TE+IGGAD+YMPVCRQHYVNGQ VI AAR
Sbjct: 121 PLADSVTKLTARCELCGKRAFFTLRKIEEMQTELIGGADIYMPVCRQHYVNGQAVIEAAR 180

Query: 220 NVLEFH--KVQSKSCVEAAA 237
           N LE    KVQS    EAAA
Sbjct: 181 NALESRKDKVQSDPHPEAAA 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532644|ref|XP_003534881.1| PREDICTED: thymidine kinase-like [Glycine max]

 Score =  345 bits (886), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 159/202 (78%), Positives = 183/202 (90%)

Query: 30  SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89
           SGEIHVI+GPMFAGKTT+LLRRI+SE+ NGRN+A+IKSSKDTRY +DS+VTHDGA+LPCW
Sbjct: 73  SGEIHVIVGPMFAGKTTSLLRRIQSETTNGRNVAIIKSSKDTRYGLDSIVTHDGAELPCW 132

Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLR 149
           AL  L+SF+QK G DAY KLDVIGIDEAQFF+DLYEFC  AADHDGKTV+VAGLDG+YLR
Sbjct: 133 ALENLSSFKQKFGIDAYEKLDVIGIDEAQFFDDLYEFCLQAADHDGKTVIVAGLDGNYLR 192

Query: 150 RSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV 209
           RSFGSVLDIIPLAD+VTKLTARCE+CGKRA FTLRKT++ + E+IGG DVYMPVCRQHYV
Sbjct: 193 RSFGSVLDIIPLADSVTKLTARCEICGKRACFTLRKTQDKQIELIGGVDVYMPVCRQHYV 252

Query: 210 NGQVVIGAARNVLEFHKVQSKS 231
           +GQV + A R+VLE HKV+  S
Sbjct: 253 SGQVAMEATRHVLESHKVECAS 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535573|ref|NP_001234713.1| TK1-like deoxyribonucleoside kinase [Solanum lycopersicum] gi|33325041|gb|AAQ08180.1| TK1-like deoxyribonucleoside kinase [Solanum lycopersicum]

 Score =  343 bits (881), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 182/205 (88%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           GEIHVI+GPMFAGKTTALLRR+  ES++GRN+ +IKSSKD RYA+D+VVTHDG + PCW+
Sbjct: 25  GEIHVIVGPMFAGKTTALLRRVNLESNDGRNVVLIKSSKDARYAVDAVVTHDGTRFPCWS 84

Query: 91  LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRR 150
           LP+L+SF+Q+ G DAY K+DVIGIDEAQFF DLYEFCCNAAD DGK +VVAGLDGDYLR+
Sbjct: 85  LPDLSSFKQRFGKDAYEKVDVIGIDEAQFFGDLYEFCCNAADFDGKIIVVAGLDGDYLRK 144

Query: 151 SFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVN 210
           SFGSVLDIIPLADTVTKLTARCELC +RAFFT RKT ETETE+IGGAD+YMPVCRQHYVN
Sbjct: 145 SFGSVLDIIPLADTVTKLTARCELCNRRAFFTFRKTNETETELIGGADIYMPVCRQHYVN 204

Query: 211 GQVVIGAARNVLEFHKVQSKSCVEA 235
           GQ V  +A+ VLE HKV ++  +E+
Sbjct: 205 GQSVNESAKMVLESHKVSNELILES 229

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557967|ref|XP_003547281.1| PREDICTED: thymidine kinase-like [Glycine max]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 158/202 (78%), Positives = 181/202 (89%)

Query: 30  SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89
           SGEIHVI+GPMFAGKTT+LLRRI+SE+ NGRN+A+IKSSKDTRY +DS+VTHDGAKLPCW
Sbjct: 76  SGEIHVIVGPMFAGKTTSLLRRIQSETANGRNVAIIKSSKDTRYGLDSIVTHDGAKLPCW 135

Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLR 149
           AL  L+SF+QK G DAY KLDVIGIDEAQFF+DLYEFC  AADHDGKTV+VAGLDG+YLR
Sbjct: 136 ALANLSSFKQKFGMDAYEKLDVIGIDEAQFFDDLYEFCRQAADHDGKTVIVAGLDGNYLR 195

Query: 150 RSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV 209
           RSFGSVLDIIPLAD+VTKLTARCE+CGKRA FTLRKT++ + E+IGG DVYMPVCRQHY 
Sbjct: 196 RSFGSVLDIIPLADSVTKLTARCEICGKRACFTLRKTQDKQIELIGGVDVYMPVCRQHYA 255

Query: 210 NGQVVIGAARNVLEFHKVQSKS 231
           +GQV + A R+VLE  KV+  S
Sbjct: 256 SGQVAMEATRHVLESKKVECGS 277

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2077382	238	TK1a "AT3G07800" [Arabidopsis	0.879	0.886	0.698	4.8e-78
TAIR|locus:2178297	282	TK1b "AT5G23070" [Arabidopsis	0.916	0.780	0.600	4.8e-71
UNIPROTKB|A5D7R8	238	TK1 "Thymidine kinase, cytosol	0.791	0.798	0.437	1.2e-33
UNIPROTKB|P04047	224	TK1 "Thymidine kinase, cytosol	0.733	0.785	0.441	1.5e-33
UNIPROTKB|P09768	234	TK1 "Thymidine kinase, cytosol	0.783	0.803	0.430	2e-33
UNIPROTKB|P04183	234	TK1 "Thymidine kinase, cytosol	0.741	0.760	0.443	3.2e-33
MGI|MGI:98763	233	Tk1 "thymidine kinase 1" [Mus	0.720	0.742	0.446	6.7e-33
UNIPROTKB|K7ERV3	267	TK1 "Thymidine kinase" [Homo s	0.641	0.576	0.447	2.1e-32
UNIPROTKB|E2QXP4	242	TK1 "Thymidine kinase" [Canis	0.741	0.735	0.437	3.7e-32
ZFIN|ZDB-GENE-030131-5801	236	tk1 "thymidine kinase 1, solub	0.795	0.809	0.415	4.7e-32

TAIR|locus:2077382 TK1a "AT3G07800" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 148/212 (69%), Positives = 174/212 (82%)

Query:    25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGA 84
             L  R SG +HVIMGPMF+GK+T+LLRRI+SE  +GR++AM+KSSKDTRYA DSVVTHDG 
Sbjct:    25 LERRGSGAVHVIMGPMFSGKSTSLLRRIKSEISDGRSVAMLKSSKDTRYAKDSVVTHDGI 84

Query:    85 KLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLD 144
               PCWALP+L SF +K G DAY KLDVIGIDEAQFF DLYEFCC  AD DGK V+VAGLD
Sbjct:    85 GFPCWALPDLMSFPEKFGLDAYNKLDVIGIDEAQFFGDLYEFCCKVADDDGKIVIVAGLD 144

Query:   145 GDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPVC 204
             GDYLRRSFG+VLDIIP+AD+VTKLTARCE+CG +AFFTLRK       +IGGADVYMPVC
Sbjct:   145 GDYLRRSFGAVLDIIPIADSVTKLTARCEVCGHKAFFTLRKNCDTRTELIGGADVYMPVC 204

Query:   205 RQHYVNGQVVIGAARNVLE-FHKVQSKSCVEA 235
             R+HY+   +VI A++ VLE   K +++SCV A
Sbjct:   205 RKHYITNHIVIKASKKVLEDSDKARAESCVAA 236

GO:0004797 "thymidine kinase activity" evidence=ISS;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009165 "nucleotide biosynthetic process" evidence=IEA;ISS

TAIR|locus:2178297 TK1b "AT5G23070" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 137/228 (60%), Positives = 175/228 (76%)

Query:     4 SNLKPAAVTTNQVNSGRDRVG-------LPHRNSGEIHVIMGPMFAGKTTALLRRIRSES 56
             +N  P+ ++T ++ +   RV        L   + GEIHV++GPMF+GKTT LLRRI +E 
Sbjct:    43 TNSPPSTISTRKLQTKATRVTSSSSSQPLSSSSPGEIHVVVGPMFSGKTTTLLRRILAER 102

Query:    57 DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA-KLDVIGID 115
             + G+ IA+IKS+KDTRY  +S+VTHDG K PCW+LP+L+SF+++ G D Y  +LDVIGID
Sbjct:   103 ETGKRIAIIKSNKDTRYCTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGID 162

Query:   116 EAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELC 175
             EAQFF DLYEFC  AAD +GKTV+VAGLDGD++RR FGSVLD+IP+ADTVTKLT+RCE+C
Sbjct:   163 EAQFFGDLYEFCREAADKEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVC 222

Query:   176 GKRAFFTLRKXXXXXXXIIGGADVYMPVCRQHYVNGQVVIGAARNVLE 223
             GKRA FT+RK       +IGGA+VYMPVCR HYV GQ V+  AR VL+
Sbjct:   223 GKRALFTMRKTEEKETELIGGAEVYMPVCRSHYVCGQNVLETARAVLD 270

GO:0004797 "thymidine kinase activity" evidence=ISS;IDA

GO:0009165 "nucleotide biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|A5D7R8 TK1 "Thymidine kinase, cytosolic" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 88/201 (43%), Positives = 121/201 (60%)

Query:    24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
             G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+     THD 
Sbjct:    12 GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQVAQYKCLVIKYAKDTRYS-SLFSTHDR 70

Query:    84 AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
               +   ALP     R  +  DA  ++ VIGIDE QFF D+ EFC N A+  GKTV+VA L
Sbjct:    71 NTME--ALPACL-LRDVI-QDAQ-RVAVIGIDEGQFFPDIVEFCENMAN-SGKTVIVAAL 124

Query:   144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPV 203
             DG + R++FG++L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  V
Sbjct:   125 DGTFQRKAFGTILNLVPLAESVVKLTAVCMECFREAAYTKRLGVEKEVEVIGGADKYHSV 184

Query:   204 CRQHY---VNGQ-VVIGAARN 220
             CR  Y    +GQ  V+ +  N
Sbjct:   185 CRLCYFKKASGQPAVLDSEEN 205

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P04047 TK1 "Thymidine kinase, cytosolic" [Gallus gallus (taxid:9031)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 83/188 (44%), Positives = 112/188 (59%)

Query:    24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
             G P R  G+I VI GPMF+GK+T L+RR+R          ++K +KDTRY    V THD 
Sbjct:    12 GSPGRPRGQIQVIFGPMFSGKSTELMRRVRRFQLAQYRCLLVKYAKDTRYCTTGVSTHDR 71

Query:    84 AKL---PCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVV 140
               +   P  AL ++  +++ LG        VIGIDE QFF D+ EFC   A+  GKTV+V
Sbjct:    72 NTMEARPACALQDV--YQEALGSA------VIGIDEGQFFPDIVEFCEKMAN-TGKTVIV 122

Query:   141 AGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVY 200
             A LDG + R++FGS+L+++PLA++V KL A C  C + A +T R        +IGGAD Y
Sbjct:   123 AALDGTFQRKAFGSILNLVPLAESVVKLNAVCMECYREASYTKRLGAEREVEVIGGADKY 182

Query:   201 MPVCRQHY 208
               VCR  Y
Sbjct:   183 HSVCRACY 190

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|P09768 TK1 "Thymidine kinase, cytosolic" [Cricetulus griseus (taxid:10029)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 84/195 (43%), Positives = 114/195 (58%)

Query:    14 NQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRY 73
             N +N      G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY
Sbjct:     2 NYINLPTVLPGSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQNKCLVIKYAKDTRY 61

Query:    74 AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADH 133
             +  S  THD   +   ALP      + +  +A     VIGIDE QFF D+ EFC     +
Sbjct:    62 S-SSFSTHDRNTMD--ALP--ACLLRDVAQEALGAA-VIGIDEGQFFPDIVEFC-EVMAN 114

Query:   134 DGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXI 193
              GKTV+VA LDG + R++FGS+L+++PLA++V KLTA C  C + A +T R        +
Sbjct:   115 AGKTVIVAALDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEV 174

Query:   194 IGGADVYMPVCRQHY 208
             IGGAD Y  VCR  Y
Sbjct:   175 IGGADKYHSVCRVCY 189

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|P04183 TK1 "Thymidine kinase, cytosolic" [Homo sapiens (taxid:9606)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 82/185 (44%), Positives = 112/185 (60%)

Query:    24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
             G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct:    12 GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70

Query:    84 AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
               +   ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA L
Sbjct:    71 NTME--ALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 124

Query:   144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPV 203
             DG + R+ FG++L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  V
Sbjct:   125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSV 184

Query:   204 CRQHY 208
             CR  Y
Sbjct:   185 CRLCY 189

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0014856 "skeletal muscle cell proliferation" evidence=IEA

GO:0031667 "response to nutrient levels" evidence=IEA

GO:0046104 "thymidine metabolic process" evidence=IEA

GO:0046688 "response to copper ion" evidence=IEA

GO:0048565 "digestive tract development" evidence=IEA

GO:0051414 "response to cortisol stimulus" evidence=IEA

GO:0060138 "fetal process involved in parturition" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IPI

GO:0008270 "zinc ion binding" evidence=IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006206 "pyrimidine nucleobase metabolic process" evidence=TAS

GO:0019206 "nucleoside kinase activity" evidence=EXP

GO:0043097 "pyrimidine nucleoside salvage" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0055086 "nucleobase-containing small molecule metabolic process" evidence=TAS

GO:0009165 "nucleotide biosynthetic process" evidence=EXP

MGI|MGI:98763 Tk1 "thymidine kinase 1" [Mus musculus (taxid:10090)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 83/186 (44%), Positives = 116/186 (62%)

Query:    26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAK 85
             P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+ +S  THD   
Sbjct:    14 PSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-NSFSTHDRNT 72

Query:    86 ---LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAG 142
                LP   L ++T  ++ LG      + VIGIDE QFF D+ +FC   A+ +GKTV+VA 
Sbjct:    73 MDALPACMLRDVT--QESLG------VAVIGIDEGQFFPDIVDFCEMMAN-EGKTVIVAA 123

Query:   143 LDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMP 202
             LDG + R++FGS+L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  
Sbjct:   124 LDGTFQRKAFGSILNLVPLAESVVKLTAVCMECFREAAYTKRLGLEKEVEVIGGADKYHS 183

Query:   203 VCRQHY 208
             VCR  Y
Sbjct:   184 VCRLCY 189

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0009165 "nucleotide biosynthetic process" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0046104 "thymidine metabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=ISO

UNIPROTKB|K7ERV3 TK1 "Thymidine kinase" [Homo sapiens (taxid:9606)]

 Score = 319 (117.4 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 72/161 (44%), Positives = 101/161 (62%)

Query:    24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
             G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct:    12 GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70

Query:    84 AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
               +   ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA L
Sbjct:    71 NTME--ALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 124

Query:   144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLR 184
             DG + R+ FG++L+++PLA++V KLTA C  C + A +T R
Sbjct:   125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKR 165

GO:0005524 "ATP binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

UNIPROTKB|E2QXP4 TK1 "Thymidine kinase" [Canis lupus familiaris (taxid:9615)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 81/185 (43%), Positives = 113/185 (61%)

Query:    24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
             G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+ +S  THD 
Sbjct:    12 GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-NSFSTHDR 70

Query:    84 AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
               +   ALP      + +  +A   + VIGIDE QFF D+ EF    A+  GKTV+VA L
Sbjct:    71 NTME--ALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFSETMANA-GKTVIVAAL 124

Query:   144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPV 203
             DG + R++FG++L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  V
Sbjct:   125 DGTFQRKAFGTILNLVPLAESVVKLTAVCMECFREAAYTKRLGSEKEVEVIGGADKYHSV 184

Query:   204 CRQHY 208
             CR  Y
Sbjct:   185 CRLCY 189

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-5801 tk1 "thymidine kinase 1, soluble" [Danio rerio (taxid:7955)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 81/195 (41%), Positives = 111/195 (56%)

Query:    16 VNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAI 75
             +N  R     P +  G+I VI GPMF+GK+T L+RR+R       +  +IK +KDTRY+ 
Sbjct:     4 LNVARILPNSPRKTRGQIQVIFGPMFSGKSTELMRRVRRFQVAQYSCLLIKYAKDTRYSC 63

Query:    76 DSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADH 133
               + THD  +       E      +L D A   L   VIGIDE QFF D  EFC   A+ 
Sbjct:    64 TGMATHDMYEQEIVNTMEAVP-ANRLRDVAPLALQACVIGIDEGQFFPDTVEFCEEMANM 122

Query:   134 DGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXI 193
              GKT++VA LDG + R++FG++L+++PLA++V KL A C  C K A +T R        +
Sbjct:   123 -GKTIIVAALDGTFQRKAFGNILNLVPLAESVVKLNAVCMQCFKEAAYTKRLGAEKEVEV 181

Query:   194 IGGADVYMPVCRQHY 208
             IGG+D Y  VCR  Y
Sbjct:   182 IGGSDKYHAVCRCCY 196

GO:0005524 "ATP binding" evidence=IEA

GO:0004797 "thymidine kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81263	KITH_ORYSJ	2, ., 7, ., 1, ., 2, 1	0.7664	0.8166	0.7232	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.1.21	0.946
3rd Layer	2.7.1	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00029148001	RecName- Full=Thymidine kinase; EC=2.7.1.21; (234 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021387001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (227 aa)	•						•		0.757
	GSVIVG00020561001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (220 aa)				•		•	•		0.616
	GSVIVG00036344001	RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)				•		•	•		0.540
	GSVIVG00014568001	RecName- Full=Thymidylate synthase; EC=2.1.1.45; (284 aa)				•		•	•		0.506
	GSVIVG00020532001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (219 aa)							•		0.504

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam00265	175	pfam00265, TK, Thymidine kinase	4e-63
PTZ00293	211	PTZ00293, PTZ00293, thymidine kinase; Provisional	1e-62
PRK04296	190	PRK04296, PRK04296, thymidine kinase; Provisional	1e-46
COG1435	201	COG1435, Tdk, Thymidine kinase [Nucleotide transpo	2e-46

>gnl|CDD|215828 pfam00265, TK, Thymidine kinase

 Score =  194 bits (495), Expect = 4e-63
 Identities = 82/178 (46%), Positives = 110/178 (61%), Gaps = 3/178 (1%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           G I +I+GPMF+GK+T L+RR+           +IK + D RY    VVTHDG  +   A
Sbjct: 1   GSIELIIGPMFSGKSTELIRRVYRYQLAQYKCVVIKYAIDNRYGTGKVVTHDGISME--A 58

Query: 91  LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRR 150
               TS    + D     + V+GIDEAQFF+D+ EFC   A+  GK V+VAGLDGD+ R+
Sbjct: 59  KLIKTSLLDDIKDIISNTIHVVGIDEAQFFDDIVEFCETMAN-LGKIVIVAGLDGDFQRK 117

Query: 151 SFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHY 208
            FG++L+++PLA+ VTKL A C  C K A FT R   E E  +IGG+D Y+ VCR+ Y
Sbjct: 118 PFGNILNLLPLAEKVTKLKAVCMKCYKDASFTKRLNNEKEIILIGGSDKYVSVCRKCY 175

Length = 175

>gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional

 Score =  194 bits (495), Expect = 1e-62
 Identities = 79/183 (43%), Positives = 110/183 (60%), Gaps = 7/183 (3%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDS-VVTHDGAKLPCW 89
           G I VI+GPMF+GKTT L+R ++  + + +   +IK SKDTRY+ +  + +HD   L   
Sbjct: 4   GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAI 63

Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLR 149
            + +L    +          DVI IDE QFF DL EF   AA+  GK V+VA LDG + R
Sbjct: 64  KVSKLKEVLET-----AKNYDVIAIDEGQFFPDLVEFSEAAAN-LGKIVIVAALDGTFQR 117

Query: 150 RSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV 209
           + FG +L++IPLA+ VTKLTA C  CGK A F+ R  +  + E+IGG D Y+  CR+ + 
Sbjct: 118 KPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177

Query: 210 NGQ 212
             Q
Sbjct: 178 TKQ 180

Length = 211

>gnl|CDD|235272 PRK04296, PRK04296, thymidine kinase; Provisional

 Score =  152 bits (388), Expect = 1e-46
 Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 10/191 (5%)

Query: 30  SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89
             ++  I G M +GK+T LL+R  +  + G  + + K + D RY    VV+  G      
Sbjct: 1   MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAI 60

Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDY 147
            +   T   + + ++   K+D + IDEAQF   E + +      D  G  V+  GLD D+
Sbjct: 61  PVSSDTDIFELI-EEEGEKIDCVLIDEAQFLDKEQVVQ-LAEVLDDLGIPVICYGLDTDF 118

Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE------ETETEIIGGADVYM 201
               F     ++ LAD VT+L A C  CG++A    R  +      E    ++GG + Y 
Sbjct: 119 RGEPFEGSPYLLALADKVTELKAICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYE 178

Query: 202 PVCRQHYVNGQ 212
            VCR+HY    
Sbjct: 179 AVCRKHYKEAL 189

Length = 190

>gnl|CDD|224352 COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism]

 Score =  153 bits (388), Expect = 2e-46
 Identities = 65/191 (34%), Positives = 92/191 (48%), Gaps = 8/191 (4%)

Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
           +  G +  I GPMF+GKT  LLRR R   + G  + + K + DTRY +  V +  G    
Sbjct: 1   KKMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSE 60

Query: 88  CWALPELTSFRQKLGDD-AYAKLDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDG 145
              +P  T    ++        +D + IDEAQFF E+L       AD  G  V+  GLD 
Sbjct: 61  AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDT 120

Query: 146 DYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE------ETETEIIGGADV 199
           D+    F     ++ +AD VTKL A C +CG++A  TLR         E    +IGG + 
Sbjct: 121 DFRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTLRLINGGPAVYEGPQILIGGNES 180

Query: 200 YMPVCRQHYVN 210
           Y   CR+H+  
Sbjct: 181 YEARCRKHHKE 191

Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.98
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.98
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.98
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.97
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.97
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.97
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.97
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.97
PTZ00293	211	thymidine kinase; Provisional	99.97
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.97
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.97
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.97
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.97
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.97
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.97
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.97
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.96
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.96
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.96
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.96
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.96
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.96
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.96
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.96
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.96
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.96
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.96
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.96
COG4559	259	ABC-type hemin transport system, ATPase component	99.96
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.96
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.96
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.96
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.96
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.96
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.96
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.96
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.96
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.96
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.96
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.96
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.96
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.96
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.96
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.96
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PF00265	176	TK: Thymidine kinase; InterPro: IPR001267 Thymidin	99.96
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.96
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.96
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.96
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.96
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.96
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.96
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.96
PRK10908	222	cell division protein FtsE; Provisional	99.96
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.96
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.96
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.96
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.96
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.96
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.96
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.96
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.96
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.96
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.96
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.96
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.95
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.95
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.95
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.95
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.95
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.95
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.95
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.95
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.95
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.95
COG1435	201	Tdk Thymidine kinase [Nucleotide transport and met	99.95
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.95
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.95
KOG3125	234	consensus Thymidine kinase [Nucleotide transport a	99.95
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.95
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.95
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.95
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.95
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.95
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.95
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.95
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.95
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.95
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.95
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.95
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.95
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.95
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.95
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.95
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.95
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.95
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.95
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.95
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.95
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.95
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.95
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.95
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.95
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.95
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.95
cd03246	173	ABCC_Protease_Secretion This family represents the	99.95
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.95
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.95
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.95
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.95
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.95
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.95
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.95
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.95
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.95
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.95
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.95
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.95
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.95
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.95
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.95
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.95
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.95
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.94
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.94
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.94
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.94
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.94
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.94
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.94
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.94
COG1123	539	ATPase components of various ABC-type transport sy	99.94
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.94
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.94
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.94
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.94
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.94
COG4181	228	Predicted ABC-type transport system involved in ly	99.94
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.94
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.94
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.94
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.94
COG1123	539	ATPase components of various ABC-type transport sy	99.94
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.94
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.94
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.94
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.94
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.94
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.94
PRK04296	190	thymidine kinase; Provisional	99.94
PRK10938	490	putative molybdenum transport ATP-binding protein	99.94
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.94
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.94
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.94
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.94
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.94
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.94
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.94
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.94
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.93
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.93
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.93
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.93
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.93
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.93
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.93
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.93
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.93
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.93
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.93
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.93
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.93
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.93
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.93
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.93
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.93
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.93
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.93
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.93
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.93
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.93
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.93
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.93
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.92
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.92
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.92
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.92
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.92
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.92
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.92
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.92
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.92
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.92
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.92
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.92
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.92
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.92
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.92
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.92
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.92
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.92
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.91
PLN03211	659	ABC transporter G-25; Provisional	99.91
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.91
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.91
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.91
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.91
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.91
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.91
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.91
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.91
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.91
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.91
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.91
COG4987	573	CydC ABC-type transport system involved in cytochr	99.91
COG4172	534	ABC-type uncharacterized transport system, duplica	99.91
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.91
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.91
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.91
COG4988	559	CydD ABC-type transport system involved in cytochr	99.91
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.91
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.91
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.91
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.91
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.91
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.91
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.91
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.9
PRK10938	490	putative molybdenum transport ATP-binding protein	99.9
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.9
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.9
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.9
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.9
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.9
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.9
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.9
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.9
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.9
PLN03130	1622	ABC transporter C family member; Provisional	99.9
PLN03232	1495	ABC transporter C family member; Provisional	99.9
COG4172	534	ABC-type uncharacterized transport system, duplica	99.9
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.9
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.9
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.9
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.89
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.89
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.89
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.89
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.89
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.89
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.89
PTZ00243	1560	ABC transporter; Provisional	99.89
COG0488	530	Uup ATPase components of ABC transporters with dup	99.89
PRK11147	635	ABC transporter ATPase component; Reviewed	99.89
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.88
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.88
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.88
PLN03073	718	ABC transporter F family; Provisional	99.88
PRK11147	635	ABC transporter ATPase component; Reviewed	99.88
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.88
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.88
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.87
PLN03140	1470	ABC transporter G family member; Provisional	99.87
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.87
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.87
PLN03073	718	ABC transporter F family; Provisional	99.87
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.86
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.86
PRK13409	590	putative ATPase RIL; Provisional	99.86
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.86
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.86
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.86
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.85
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.85
COG0488	530	Uup ATPase components of ABC transporters with dup	99.85
PLN03140	1470	ABC transporter G family member; Provisional	99.85
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.84
PLN03232	1495	ABC transporter C family member; Provisional	99.84
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.83
PLN03130	1622	ABC transporter C family member; Provisional	99.82
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.82
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.81
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.81
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.81
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.79
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.79
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.78
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.78
PTZ00243	1560	ABC transporter; Provisional	99.77
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.77
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.76
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.76
KOG0062	582	consensus ATPase component of ABC transporters wit	99.76
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.75
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.75
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.75
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.73
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.72
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.72
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.72
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.71
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.69
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.69
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.67
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.63
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.63
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.63
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.63
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.62
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.61
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.61
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.59
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.59
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.58
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.58
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.57
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.57
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.57
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.57
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.56
COG4178	604	ABC-type uncharacterized transport system, permeas	99.56
KOG0062	582	consensus ATPase component of ABC transporters wit	99.49
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.49
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.43
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.43
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.42
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.42
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.39
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.35
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.32
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.31
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.29
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.29
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.26
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.25
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.24
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.24
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.2
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.19
PRK13695	174	putative NTPase; Provisional	99.18
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.11
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.11
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.1
COG3910	233	Predicted ATPase [General function prediction only	99.09
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.07
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.01
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.0
PRK06067	234	flagellar accessory protein FlaH; Validated	98.98
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.96
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	98.93
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.87
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.81
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.76
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	98.75
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.74
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.73
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.71
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.7
PRK09183	259	transposase/IS protein; Provisional	98.64
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.64
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.59
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.58
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.57
PRK11823	446	DNA repair protein RadA; Provisional	98.52
smart00382	148	AAA ATPases associated with a variety of cellular	98.5
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.48
PF09818	448	ABC_ATPase: Predicted ATPase of the ABC class; Int	98.47
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.46
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	98.4
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.38
PRK13764	602	ATPase; Provisional	98.37
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.34
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.34
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.31
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	98.3
COG3044	554	Predicted ATPase of the ABC class [General functio	98.29
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.27
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.27
PRK00300	205	gmk guanylate kinase; Provisional	98.26
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	98.26
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	98.25
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.24
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.22
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	98.21
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.2
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	98.2
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.18
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.17
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	98.17
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.16
PRK10416	318	signal recognition particle-docking protein FtsY;	98.16
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.14
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.14
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.14
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.14
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.12
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.12
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	98.11
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.11
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.11
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.1
PRK09825	176	idnK D-gluconate kinase; Provisional	98.1
TIGR00767	415	rho transcription termination factor Rho. Members	98.09
PF13173	128	AAA_14: AAA domain	98.06
PRK08181	269	transposase; Validated	98.04
PRK06893	229	DNA replication initiation factor; Validated	98.04
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.04
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	98.03
PF00004	132	AAA: ATPase family associated with various cellula	98.02
PRK09302	509	circadian clock protein KaiC; Reviewed	98.02
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	97.98
PRK06526	254	transposase; Provisional	97.98
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.97
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	97.97
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.95

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-37  Score=251.49  Aligned_cols=160  Identities=18%  Similarity=0.184  Sum_probs=132.6

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++|++|+|     |++||++|.+||+++|+||||||||||| |||+++        .++|.++.........|. .
T Consensus         1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlL-RclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~-~   78 (240)
T COG1126           1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLL-RCLNGLEEPDSGSITVDGEDVGDKKDILKLRR-K   78 (240)
T ss_pred             CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHH-HHHHCCcCCCCceEEECCEeccchhhHHHHHH-h
Confidence            489999999999     9999999999999999999999999999 999998        234544332211112222 3


Q ss_pred             CeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhccCcEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~~p~ll  112 (240)
                      .|+|||..++||.+|+.+|..+....                                           ++.++.+|+++
T Consensus        79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vm  158 (240)
T COG1126          79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVM  158 (240)
T ss_pred             cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEE
Confidence            59999999999999999887653210                                           12368999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |+||||+      ..++++.++++++ .|.|.++|||++.|+          .+.||||++|++ +++..|+|+.+
T Consensus       159 LFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~FA----------r~VadrviFmd~G~iie~g~p~~~  223 (240)
T COG1126         159 LFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGFA----------REVADRVIFMDQGKIIEEGPPEEF  223 (240)
T ss_pred             eecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHHH----------HHhhheEEEeeCCEEEEecCHHHH
Confidence            9999999      3589999999998 799999999999999          999999999999 88889988754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=9.6e-36  Score=253.13  Aligned_cols=160  Identities=19%  Similarity=0.151  Sum_probs=132.1

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++|+||++++|++++|+||||||||||| |+|+|+        .++|+++..++++...+  ..
T Consensus         2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLL-k~l~g~l~p~~G~V~l~g~~i~~~~~kelAk--~i   78 (258)
T COG1120           2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLL-KCLAGLLKPKSGEVLLDGKDIASLSPKELAK--KL   78 (258)
T ss_pred             eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCCchhhcCHHHHhh--hE
Confidence            78999999999     9999999999999999999999999999 999996        45777777766655444  35


Q ss_pred             eEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhccCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLD  110 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~  110 (240)
                      +|++|.......+++.+...+...                                              ++..++++|+
T Consensus        79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~  158 (258)
T COG1120          79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP  158 (258)
T ss_pred             EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence            899998655555555543322100                                              1223699999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce-ee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF-FT  182 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~-~~  182 (240)
                      +|+|||||+      +.+++++++++++++|+|||+++||++.+          .++||++++|++ ++.+.|+|++ ++
T Consensus       159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A----------~ryad~~i~lk~G~i~a~G~p~evlT  228 (258)
T COG1120         159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLA----------ARYADHLILLKDGKIVAQGTPEEVLT  228 (258)
T ss_pred             EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCeEEeecCcchhcC
Confidence            999999988      45899999999977899999999999999          999999999999 9999999875 44

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.6e-34  Score=239.94  Aligned_cols=164  Identities=21%  Similarity=0.150  Sum_probs=139.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc-cc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT-RY   73 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~-~~   73 (240)
                      .+.|++++|+++|     ++|+||+|++||+++|+||||||||||| |+|.|+        .++|+++...+..... -.
T Consensus         6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlL-r~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLL-RLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHH-HHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            5689999999999     9999999999999999999999999999 999997        4678877766543321 11


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh--------------------------------------------chhhhccC
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------GDDAYAKL  109 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~l~~~p  109 (240)
                      ...|++||.+++|..+++.+|..+..+-                                            ++.++.+|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP  164 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP  164 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence            2348999999999999999998763220                                            12258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ++|++||||+      ...+.++++++.+.-|.|+++||||++.+          ..+|||+++|.+ ++.++|+++++.
T Consensus       165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~----------~~i~Drv~~L~~gkv~~~Gt~~el~  234 (263)
T COG1127         165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSL----------LTIADRVAVLADGKVIAEGTPEELL  234 (263)
T ss_pred             CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHH----------HhhhceEEEEeCCEEEEeCCHHHHH
Confidence            9999999998      34788899999887899999999999999          999999999999 999999998654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-34  Score=241.39  Aligned_cols=160  Identities=23%  Similarity=0.176  Sum_probs=137.6

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|+||.|     ++++||+|++||+++++|||||||||+| |+|+++        .++|+++..++....+| + +
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtL-kMINrLiept~G~I~i~g~~i~~~d~~~LRr-~-I   77 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSGEILIDGEDISDLDPVELRR-K-I   77 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHH-HHHhcccCCCCceEEECCeecccCCHHHHHH-h-h
Confidence            78999999999     9999999999999999999999999999 999997        56888887776554433 3 5


Q ss_pred             eEEEccCceecceecCcchhHHHhh-----------------------------------c---------hhhhccCcEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL-----------------------------------G---------DDAYAKLDVI  112 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~-----------------------------------~---------~~l~~~p~ll  112 (240)
                      ||+-|...+||++|+.+|..+...+                                   +         +.++.+|++|
T Consensus        78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il  157 (309)
T COG1125          78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL  157 (309)
T ss_pred             hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence            8999999999999999887653221                                   1         1268999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      |+|||++      +.++.+.+.++.++.|+|||+||||++++          ..++|||.+|++ +++..++|+++.
T Consensus       158 LMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA----------~kLadri~vm~~G~i~Q~~~P~~il  224 (309)
T COG1125         158 LMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEA----------LKLADRIAVMDAGEIVQYDTPDEIL  224 (309)
T ss_pred             eecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHH----------HhhhceEEEecCCeEEEeCCHHHHH
Confidence            9999977      56788888888887899999999999999          999999999999 999999987654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-34  Score=253.19  Aligned_cols=160  Identities=21%  Similarity=0.190  Sum_probs=138.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .+.++++|+++.|     ++|+||+|++||+++|+|||||||||+| |+|+|+        .++|+++...++..+    
T Consensus         3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlL-R~IAGfe~p~~G~I~l~G~~i~~lpp~kR----   77 (352)
T COG3842           3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLL-RMIAGFEQPSSGEILLDGEDITDVPPEKR----   77 (352)
T ss_pred             CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChhhc----
Confidence            4589999999999     9999999999999999999999999999 999998        467888888776432    


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhccCcE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~~p~l  111 (240)
                      ..++|||+..+||++|+.+|..|..+.                                           +..++.+|++
T Consensus        78 ~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v  157 (352)
T COG3842          78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV  157 (352)
T ss_pred             ccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch
Confidence            258999999999999999997765431                                           1125899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ||||||.+      +.++...++++.++.|+|.|+||||-+++          +.++|||.+|++ ++...|+|+++.
T Consensus       158 LLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEA----------l~msDrI~Vm~~G~I~Q~gtP~eiY  225 (352)
T COG3842         158 LLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEA----------LAMSDRIAVMNDGRIEQVGTPEEIY  225 (352)
T ss_pred             hhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH----------hhhccceEEccCCceeecCCHHHHh
Confidence            99999977      44677788888877899999999999999          999999999999 999999987654

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.3e-34  Score=237.17  Aligned_cols=163  Identities=20%  Similarity=0.182  Sum_probs=141.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .+++++++|+++|     ++||||++++||+++|+|||||||||++ ++|+|+        .+.|+++...++....+.+
T Consensus         2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlf-NlitG~~~P~~G~v~~~G~~it~l~p~~iar~G   80 (250)
T COG0411           2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLF-NLITGFYKPSSGTVIFRGRDITGLPPHRIARLG   80 (250)
T ss_pred             CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeee-eeecccccCCCceEEECCcccCCCCHHHHHhcc
Confidence            3579999999999     8999999999999999999999999999 999997        4688899988888777766


Q ss_pred             CCeEEEccCceecceecCcchhHHHh----h-------------------------------------------------
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQK----L-------------------------------------------------  101 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~----~-------------------------------------------------  101 (240)
                      . .-.||...+|+.+|+.+|......    +                                                 
T Consensus        81 i-~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LE  159 (250)
T COG0411          81 I-ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLE  159 (250)
T ss_pred             c-eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHH
Confidence            4 567999999999999988765411    0                                                 


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       +..++.+|++|+||||.+      ..++.++|+++.++.|.||+++.||++.+          +.+||||++|+. +++
T Consensus       160 IArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~V----------m~l~dri~Vl~~G~~I  229 (250)
T COG0411         160 IARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLV----------MGLADRIVVLNYGEVI  229 (250)
T ss_pred             HHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHH----------hhhccEEEeccCCcCc
Confidence             112589999999999977      35799999999986789999999999999          999999999999 999


Q ss_pred             ccCCcceee
Q 026304          174 LCGKRAFFT  182 (240)
Q Consensus       174 ~~g~~~~~~  182 (240)
                      ++|+|++..
T Consensus       230 AeG~P~eV~  238 (250)
T COG0411         230 AEGTPEEVR  238 (250)
T ss_pred             ccCCHHHHh
Confidence            999998643

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-32  Score=231.02  Aligned_cols=150  Identities=22%  Similarity=0.167  Sum_probs=120.6

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .+++++++++.|     |+|+||+|.+||+++|+||||||||||| |+|+|+.  ..|. +.............++|+||
T Consensus         2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLL-riiAGL~~p~~G~-V~~~g~~v~~p~~~~~~vFQ   79 (248)
T COG1116           2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLL-RLIAGLEKPTSGE-VLLDGRPVTGPGPDIGYVFQ   79 (248)
T ss_pred             ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEECCcccCCCCCCEEEEec
Confidence            478999999998     9999999999999999999999999999 9999983  2222 22211111111223589999


Q ss_pred             cCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC
Q 026304           82 DGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~  119 (240)
                      +..++|..|+.+|..+....                                          ...++.+|++||||||++
T Consensus        80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg  159 (248)
T COG1116          80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG  159 (248)
T ss_pred             cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            99999999999887654321                                          112689999999999977


Q ss_pred             ------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                            +..+.+.+.++.++.++||++||||++++          ..++|||++|.+
T Consensus       160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA----------v~LsdRivvl~~  206 (248)
T COG1116         160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEA----------VYLADRVVVLSN  206 (248)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH----------HhhhCEEEEecC
Confidence                  45788888888887899999999999999          999999999986

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-32  Score=231.92  Aligned_cols=161  Identities=19%  Similarity=0.222  Sum_probs=121.1

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-h-hCCceEEeeccc--hhcccCCCeE
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-S-DNGRNIAMIKSS--KDTRYAIDSV   78 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~-~~g~~i~~~~~~--~~~~~~~~~~   78 (240)
                      .++|+++|+++.|     |+||||++++|++++|+||||||||||+ |+|.|+ . ..|. +......  .......++|
T Consensus         2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLl-K~iLGll~p~~G~-i~~~g~~~~~~~~~~~IgY   79 (254)
T COG1121           2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLL-KAILGLLKPSSGE-IKIFGKPVRKRRKRLRIGY   79 (254)
T ss_pred             CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCcce-EEEccccccccccCCeEEE
Confidence            3589999999999     8999999999999999999999999999 999996 2 3343 2222111  1111223589


Q ss_pred             EEccCc---eecceecCcchhHH--------------------------------H--------------hhchhhhccC
Q 026304           79 VTHDGA---KLPCWALPELTSFR--------------------------------Q--------------KLGDDAYAKL  109 (240)
Q Consensus        79 v~q~~~---~~~~~~~~~~~~~~--------------------------------~--------------~~~~~l~~~p  109 (240)
                      |||...   -|| .|+++...+.                                .              .+++.++++|
T Consensus        80 VPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p  158 (254)
T COG1121          80 VPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP  158 (254)
T ss_pred             cCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence            998542   222 2333221110                                0              0123479999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~  182 (240)
                      ++|+||||+.      +..++++|++++++ |+||+++|||++.+          ..+||+|+.|+.++.+.|++++..
T Consensus       159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v----------~~~~D~vi~Ln~~~~~~G~~~~~~  226 (254)
T COG1121         159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLV----------MAYFDRVICLNRHLIASGPPEEVL  226 (254)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHh----------HhhCCEEEEEcCeeEeccChhhcc
Confidence            9999999977      56899999999985 99999999999999          999999999999888889887643

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.4e-33  Score=229.49  Aligned_cols=163  Identities=20%  Similarity=0.245  Sum_probs=143.9

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++||+..|     |++|||++++||+++|+||||||||||| ++|+|+        .++|+++...++....+.+.
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlL-kti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi   80 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLL-KTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI   80 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence            589999999999     9999999999999999999999999999 999997        46899999999888888774


Q ss_pred             CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll  113 (240)
                       +||||...+|+.+|+++|+.+....                                          +..++.+|++|+
T Consensus        81 -~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL  159 (237)
T COG0410          81 -AYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL  159 (237)
T ss_pred             -EeCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence             8999999999999999887653110                                          122699999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTL  183 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~  183 (240)
                      ||||+.      ..++.+.+++++++.|.||++|.++..++          .++|||.++|.+ ++++.|+.+++..
T Consensus       160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A----------l~iaDr~yvle~Griv~~G~~~eL~~  226 (237)
T COG0410         160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA----------LEIADRGYVLENGRIVLSGTAAELLA  226 (237)
T ss_pred             ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH----------HHhhCEEEEEeCCEEEEecCHHHHhc
Confidence            999977      46899999999975688999999999999          999999999999 9999999876543

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.5e-33  Score=230.28  Aligned_cols=166  Identities=20%  Similarity=0.166  Sum_probs=137.4

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc-cc
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT-RY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~-~~   73 (240)
                      .||+++||++.|      |++|||+|++||+++|+||||||||||| |+|+|+        .++|.++...+.+... .+
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLL-R~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r   80 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLL-RSLNGLVDPTSGEILFNGVQITKLKGKELRKLR   80 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHH-HHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence            489999999999      9999999999999999999999999999 999997        3466666655544322 22


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh---------------------------h-----------------------ch
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK---------------------------L-----------------------GD  103 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~---------------------------~-----------------------~~  103 (240)
                      ...|++||.+.+.+.+++.+|......                           +                       +.
T Consensus        81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIAR  160 (258)
T COG3638          81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIAR  160 (258)
T ss_pred             HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHH
Confidence            346999999999998888766543210                           0                       12


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++++|++||.|||++      ...+++.|++++++.|.|||+..|+++.+          .+|||||+-|++ +++++|
T Consensus       161 aL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA----------~~Y~~Riigl~~G~ivfDg  230 (258)
T COG3638         161 ALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLA----------KKYADRIIGLKAGRIVFDG  230 (258)
T ss_pred             HHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHH----------HHHHhhheEecCCcEEEeC
Confidence            2699999999999977      35899999999988999999999999999          999999999999 999999


Q ss_pred             Ccceeeeee
Q 026304          177 KRAFFTLRK  185 (240)
Q Consensus       177 ~~~~~~~~~  185 (240)
                      ++.+++...
T Consensus       231 ~~~el~~~~  239 (258)
T COG3638         231 PASELTDEA  239 (258)
T ss_pred             ChhhhhHHH
Confidence            987766433

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.5e-33  Score=237.02  Aligned_cols=160  Identities=19%  Similarity=0.123  Sum_probs=137.7

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-   70 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-   70 (240)
                      ||+++++||.|          ++||||+|++||++||+|.||||||||+ |+++++        .++|+++..++.... 
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLi-R~iN~Le~PtsG~v~v~G~di~~l~~~~Lr   79 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-RLINLLERPTSGSVFVDGQDLTALSEAELR   79 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHH-HHHhccCCCCCceEEEcCEecccCChHHHH
Confidence            68999999887          7899999999999999999999999999 999998        467888877765432 


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhcc
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAK  108 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~  108 (240)
                      ..++.+|++||+..++...|+.+|..+...+                                          ++.++.+
T Consensus        80 ~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~  159 (339)
T COG1135          80 QLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANN  159 (339)
T ss_pred             HHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence            2223469999999999999999988776432                                          1226999


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++||.||||+      ...++++|+++.++.|.||+++||.|+.+          .++|||+.+|++ +++..|+...
T Consensus       160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vv----------k~ic~rVavm~~G~lvE~G~v~~  228 (339)
T COG1135         160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVV----------KRICDRVAVLDQGRLVEEGTVSE  228 (339)
T ss_pred             CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHH----------HHHhhhheEeeCCEEEEeccHHH
Confidence            99999999999      34799999999988999999999999999          999999999999 9999987643

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.98  E-value=1e-32  Score=230.40  Aligned_cols=150  Identities=19%  Similarity=0.190  Sum_probs=125.5

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--   70 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--   70 (240)
                      |++++||++.|         |+++||+|++||+++|+||||||||||| ++|.|+        .++|+++..++....  
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL-niig~ld~pt~G~v~i~g~d~~~l~~~~~~~   79 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDKPTSGEVLINGKDLTKLSEKELAK   79 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence            47889999988         8899999999999999999999999999 999997        456777766654332  


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhc
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYA  107 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~  107 (240)
                      .|....||+||...+++.+|+.+|+.+...+                                           ++.++.
T Consensus        80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~  159 (226)
T COG1136          80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN  159 (226)
T ss_pred             HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence            2344469999999999999999988753211                                           122689


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                      +|++||.||||.      ..++++++++++++.|+||||||||+..+           .+|||++.|++ +
T Consensus       160 ~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-----------~~~dr~i~l~dG~  219 (226)
T COG1136         160 NPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-----------KYADRVIELKDGK  219 (226)
T ss_pred             CCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-----------HhCCEEEEEeCCe
Confidence            999999999988      35899999999886799999999999887           79999999988 6

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.98  E-value=1.1e-32  Score=242.64  Aligned_cols=161  Identities=22%  Similarity=0.178  Sum_probs=138.9

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .+|+++||++.|     ++++||+|+.||+++|+||||||||||| |+|+|+        .++|+++..++|..+    .
T Consensus         2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlL-r~IAGLe~~~~G~I~i~g~~vt~l~P~~R----~   76 (338)
T COG3839           2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLL-RMIAGLEEPTSGEILIDGRDVTDLPPEKR----G   76 (338)
T ss_pred             cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCChhHC----C
Confidence            379999999999     7899999999999999999999999999 999998        467888887766432    2


Q ss_pred             CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll  113 (240)
                      .++|||...+||.+|+.+|..+..+.                                          +..++.+|+++|
T Consensus        77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L  156 (338)
T COG3839          77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL  156 (338)
T ss_pred             EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence            58999999999999999998876543                                          122589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLR  184 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~  184 (240)
                      ||||.+      +..+...|+++.++.|.|+|.+|||..++          ..++|||.+|++ ++...|+|.++..+
T Consensus       157 ~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EA----------mtladri~Vm~~G~i~Q~g~p~ely~~  224 (338)
T COG3839         157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEA----------MTLADRIVVMNDGRIQQVGTPLELYER  224 (338)
T ss_pred             ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHH----------HhhCCEEEEEeCCeeeecCChHHHhhC
Confidence            999977      44677888888877899999999999999          999999999998 99999998765433

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.98  E-value=6.5e-33  Score=224.89  Aligned_cols=162  Identities=19%  Similarity=0.153  Sum_probs=132.8

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      ||++.+++++|      ++||||+++.|++++|+|||||||||+| |+|+++.        ++|.+....+..  .|. .
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~L-RmiatlL~P~~G~v~idg~d~~~~p~~--vrr-~   76 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLL-RMIATLLIPDSGKVTIDGVDTVRDPSF--VRR-K   76 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHH-HHHHHhccCCCceEEEeecccccChHH--Hhh-h
Confidence            78999999999      8999999999999999999999999999 9999973        233333322221  222 3


Q ss_pred             CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll  113 (240)
                      +|+++....++..+|+.+|+.+...+                                          +..++++|++++
T Consensus        77 IGVl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~v  156 (245)
T COG4555          77 IGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILV  156 (245)
T ss_pred             cceecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEE
Confidence            58888777888899999988776543                                          122599999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeeeec
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLRKT  186 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~~~  186 (240)
                      ||||++      ...+.+.++++++ .|++||++||+++++          .++||++++|++ .+++.|+++.+..+..
T Consensus       157 lDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m~Ev----------ealCDrvivlh~Gevv~~gs~~~l~~r~~  225 (245)
T COG4555         157 LDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIMQEV----------EALCDRVIVLHKGEVVLEGSIEALDARTV  225 (245)
T ss_pred             EcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccHHHH----------HHhhheEEEEecCcEEEcCCHHHHHHHHh
Confidence            999988      4578899999987 799999999999999          999999999999 9999999876655543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.97  E-value=5.7e-32  Score=238.20  Aligned_cols=161  Identities=20%  Similarity=0.128  Sum_probs=130.6

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      ..++++++||+++|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...+  ...+ 
T Consensus         4 ~~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl-~~l~Gl~~p~~G~v~i~G~~~~~~~--~~~~-   79 (306)
T PRK13537          4 SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTL-RMLLGLTHPDAGSISLCGEPVPSRA--RHAR-   79 (306)
T ss_pred             CCceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEecccch--HHHH-
Confidence            45689999999999     8999999999999999999999999999 9999972        3344332211  1112 


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      ...+|++|+..+++.+++.+++.+...+                                          ...++++|++
T Consensus        80 ~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l  159 (306)
T PRK13537         80 QRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV  159 (306)
T ss_pred             hcEEEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE
Confidence            2358999999888888888776543211                                          1115899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      |+|||||+      +..++++|+++++ .|+|||++||+++++          ..+||||++|++ ++.+.|+++.+.
T Consensus       160 llLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~e~----------~~~~d~i~il~~G~i~~~g~~~~l~  226 (306)
T PRK13537        160 LVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEA----------ERLCDRLCVIEEGRKIAEGAPHALI  226 (306)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999988      4579999999976 699999999999999          999999999999 999999887654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=7.2e-32  Score=230.97  Aligned_cols=160  Identities=25%  Similarity=0.218  Sum_probs=132.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||.++++++.|     ++|||++|+.||+++++||||||||||| |+|+|+        .++|+.+..... ...+.+.+
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlL-RiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~V   79 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLL-RIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKV   79 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHH-HHHhCcCCCCCceEEECCEeccchhc-cchhhcce
Confidence            68999999988     8899999999999999999999999999 999998        345552222211 12233346


Q ss_pred             eEEEccCceecceecCcchhHHHhh--------------------------------------------chhhhccCcEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~l~~~p~ll  112 (240)
                      |+|||+..+|+.+|+.+|..|..+.                                            +..++.+|++|
T Consensus        80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vL  159 (345)
T COG1118          80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVL  159 (345)
T ss_pred             eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeE
Confidence            9999999999999999988775421                                            11258899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||||..      +.++...|+++.++.|.|.++||||.+++          .++||||++|++ ++...|+|+++
T Consensus       160 LLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea----------~~ladrvvvl~~G~Ieqvg~p~ev  225 (345)
T COG1118         160 LLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEA----------LELADRVVVLNQGRIEQVGPPDEV  225 (345)
T ss_pred             eecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHH----------HhhcceEEEecCCeeeeeCCHHHH
Confidence            9999966      45788899999887799999999999999          999999999999 99999988754

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.97  E-value=1.9e-31  Score=237.85  Aligned_cols=162  Identities=19%  Similarity=0.088  Sum_probs=130.4

Q ss_pred             CCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcc
Q 026304            6 LKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTR   72 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~   72 (240)
                      +..++|+++||+++|     ++|+||+|++|++++|+||||||||||+ ++|+|+.        ++|.++....  ...+
T Consensus        37 ~~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl-~~L~Gl~~p~~G~i~i~G~~~~~~~--~~~~  113 (340)
T PRK13536         37 MSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIA-RMILGMTSPDAGKITVLGVPVPARA--RLAR  113 (340)
T ss_pred             CCceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCceEEEECCEECCcch--HHHh
Confidence            445689999999999     9999999999999999999999999999 9999972        3444432211  1112


Q ss_pred             cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD  110 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~  110 (240)
                       ...+|++|+..+++.+++.+++.+...+                                          +..++.+|+
T Consensus       114 -~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~  192 (340)
T PRK13536        114 -ARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQ  192 (340)
T ss_pred             -ccEEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCC
Confidence             2358999998888888887766532110                                          111589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      +||||||++      +.+++++|+++++ .|.|||++||+++++          ..+||+|++|++ ++..+|+++.+.
T Consensus       193 lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~e~----------~~~~d~i~il~~G~i~~~g~~~~l~  260 (340)
T PRK13536        193 LLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEA----------ERLCDRLCVLEAGRKIAEGRPHALI  260 (340)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHHH
Confidence            999999988      5689999999987 699999999999999          999999999999 999999987653

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.97  E-value=3.1e-31  Score=232.08  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=129.7

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeec--cc---hhcccCCCe
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIK--SS---KDTRYAIDS   77 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~--~~---~~~~~~~~~   77 (240)
                      +++++|+++.|      |++|||+|++|++++++||||||||||+ |+|+|+.. .+-.+....  ..   ...+ ...+
T Consensus         4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTll-k~l~gl~~p~~G~i~i~G~~~~~~~~~~~-~~ig   81 (293)
T COG1131           4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLL-KILAGLLKPTSGEILVLGYDVVKEPAKVR-RRIG   81 (293)
T ss_pred             eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEEcCEeCccCHHHHH-hheE
Confidence            57889999998      8999999999999999999999999999 99999832 222222221  11   1112 2359


Q ss_pred             EEEccCceecceecCcchhHHHhhc------------------------------------------hhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKLG------------------------------------------DDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~p~lllLD  115 (240)
                      |++|.+.+++.+|+.+++.+...+.                                          ..++.+|++||||
T Consensus        82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD  161 (293)
T COG1131          82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD  161 (293)
T ss_pred             EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            9999999999999998877754321                                          1158999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      |||+      +.+++++|++++++.+.||+++||.++++          ..+||||++|++ +++++|+++.+.
T Consensus       162 EPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~----------~~~~d~v~il~~G~~~~~g~~~~l~  225 (293)
T COG1131         162 EPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEA----------EELCDRVIILNDGKIIAEGTPEELK  225 (293)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHH----------HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence            9998      56899999999984348999999999999          999999999999 999999876643

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.97  E-value=4.4e-31  Score=212.44  Aligned_cols=154  Identities=22%  Similarity=0.155  Sum_probs=129.5

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-cccC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-TRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-~~~~   74 (240)
                      ||+++||++.|      |+||||+|++||++.|+||||||||||| |+|.+.        .++|.++..++.... .-++
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTll-kLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR   79 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLL-KLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR   79 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHH-HHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence            68999999999      9999999999999999999999999999 999885        467777776654331 1122


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll  112 (240)
                      .+|+|||+..+.+..|+++|..+...+                                          +..++++|++|
T Consensus        80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL  159 (223)
T COG2884          80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL  159 (223)
T ss_pred             eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence            359999999999999999998875432                                          11258999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      |.||||.      ..++++++.++.. .|+||+|+|||.+.+          ..+--|++.|.+ ++...
T Consensus       160 lADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~lv----------~~~~~rvl~l~~Grl~~d  218 (223)
T COG2884         160 LADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLELV----------NRMRHRVLALEDGRLVRD  218 (223)
T ss_pred             eecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHHH----------HhccCcEEEEeCCEEEec
Confidence            9999987      3489999999987 899999999999999          888899999998 77643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.3e-31  Score=235.53  Aligned_cols=160  Identities=15%  Similarity=0.109  Sum_probs=129.4

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-c
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-T   71 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-~   71 (240)
                      ||+++|++++|         ++|+||+|++||+++|+||||||||||+ |+|+|+        .++|+++...++... .
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLl-r~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~   79 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTSGSVIVDGQDLTTLSNSELTK   79 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence            68999999887         7899999999999999999999999999 999997        345665544432211 1


Q ss_pred             ccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKL  109 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p  109 (240)
                      ..+..+|+||+..+++..++.++..+....                                          +..++.+|
T Consensus        80 ~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P  159 (343)
T TIGR02314        80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence            123469999999988888888776543210                                          11258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ++||+||||+      ...++++|++++++.|.|||++|||++.+          .++||++++|++ ++...|+++.
T Consensus       160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v----------~~~~d~v~vl~~G~iv~~g~~~~  227 (343)
T TIGR02314       160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVV----------KRICDCVAVISNGELIEQGTVSE  227 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHH
Confidence            9999999988      45799999999875699999999999999          999999999999 8888887654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PTZ00293 thymidine kinase; Provisional

Probab=99.97  E-value=4.1e-30  Score=212.93  Aligned_cols=174  Identities=44%  Similarity=0.747  Sum_probs=155.3

Q ss_pred             cCcEEEEEEcCCCCcHHH-HHHHHHcCchhCCceEEeeccchhccc-CCCeEEEccCceecceecCcchhHHHhhchhhh
Q 026304           29 NSGEIHVIMGPMFAGKTT-ALLRRIRSESDNGRNIAMIKSSKDTRY-AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAY  106 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKST-LLl~~i~gl~~~g~~i~~~~~~~~~~~-~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~  106 (240)
                      ..|.+..+.||+|||||| || +.+..+...|+++..+++..+.|+ ....++++++...++..+.+...+...+     
T Consensus         2 ~~G~i~vi~GpMfSGKTteLL-r~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~-----   75 (211)
T PTZ00293          2 YRGTISVIIGPMFSGKTTELM-RLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA-----   75 (211)
T ss_pred             CceEEEEEECCCCChHHHHHH-HHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc-----
Confidence            469999999999999999 66 999988899999999998888887 4345788888777877776666554432     


Q ss_pred             ccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304          107 AKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT  186 (240)
Q Consensus       107 ~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~  186 (240)
                      .++++|++||.+|+.++.+++..+++ .|++||++++|.++.+++|+.+.+|+.+||+|..|+..|..||.++.++.|+.
T Consensus        76 ~~~dvI~IDEaQFf~~i~~~~~~l~~-~g~~VivaGLd~Df~~~~F~~~~~Ll~~AD~V~kl~aiC~~CG~~A~~t~R~~  154 (211)
T PTZ00293         76 KNYDVIAIDEGQFFPDLVEFSEAAAN-LGKIVIVAALDGTFQRKPFGQILNLIPLAERVTKLTAVCMFCGKEASFSKRIV  154 (211)
T ss_pred             cCCCEEEEEchHhhHhHHHHHHHHHH-CCCeEEEEecCcccccCcCccHHHHHHhhCEEEEcceEchhhCCcceeEEEEc
Confidence            57899999999998888999888886 79999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCcceEEeecchhhc
Q 026304          187 EETETEIIGGADVYMPVCRQHYV  209 (240)
Q Consensus       187 ~~~~~~~~g~~~~y~~~c~~~~~  209 (240)
                      .+++++.+|+.+.|.++||+||.
T Consensus       155 ~~~~~v~IGg~e~Y~a~CR~c~~  177 (211)
T PTZ00293        155 QSEQIELIGGEDKYIATCRKCFR  177 (211)
T ss_pred             CCCCEEEECCcccEEehhhhhhh
Confidence            98899999999999999999995

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=6.1e-31  Score=235.65  Aligned_cols=158  Identities=18%  Similarity=0.182  Sum_probs=131.2

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      ++|+++|++++|     ++++||++++|++++|+||||||||||| ++|+|+        .++|+++...++.   + +.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~---~-r~   77 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLL-RIIAGLERQTAGTIYQGGRDITRLPPQ---K-RD   77 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCceEEEECCEECCCCCHH---H-CC
Confidence            479999999998     8999999999999999999999999999 999998        3455555433221   2 23


Q ss_pred             CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll  113 (240)
                      .+|+||+..+|+.+++.+|+.+....                                          +..++.+|++||
T Consensus        78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llL  157 (353)
T TIGR03265        78 YGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLL  157 (353)
T ss_pred             EEEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            58999999999999999887654211                                          112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +.++.+.|+++.++.|.|+|++|||++++          ..+|||+++|++ ++...|+++++
T Consensus       158 LDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea----------~~l~d~i~vl~~G~i~~~g~~~~~  222 (353)
T TIGR03265       158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEA----------LSMADRIVVMNHGVIEQVGTPQEI  222 (353)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            999987      45788899988775699999999999999          999999999999 99999987653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.4e-31  Score=235.77  Aligned_cols=157  Identities=19%  Similarity=0.123  Sum_probs=130.0

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      +|+++|++++|      ++++||++++|++++|+||||||||||| ++|+|+        .++|+++...++.   + +.
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~~---~-r~   77 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLL-RMVAGLERITSGEIWIGGRVVNELEPA---D-RD   77 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCHH---H-CC
Confidence            69999999998      7899999999999999999999999999 999997        3455555433321   1 23


Q ss_pred             CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll  113 (240)
                      .+|+||+..+|+.+++.+|+.+....                                          +..++.+|++||
T Consensus        78 ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llL  157 (356)
T PRK11650         78 IAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFL  157 (356)
T ss_pred             EEEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            58999999999999998877653210                                          112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +..+.+.|+++.++.|.|+|++|||++++          ..+||++++|++ ++...|+++++
T Consensus       158 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea----------~~l~D~i~vl~~G~i~~~g~~~~~  222 (356)
T PRK11650        158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEA----------MTLADRVVVMNGGVAEQIGTPVEV  222 (356)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEEECCHHHH
Confidence            999988      45788889988775699999999999999          999999999999 99888987654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=7.4e-31  Score=218.71  Aligned_cols=160  Identities=15%  Similarity=0.114  Sum_probs=124.5

Q ss_pred             ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304            9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT   71 (240)
Q Consensus         9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~   71 (240)
                      .|++++|+++.|         +++|||++.+||.++|+|+||||||||+ |+|.|+        .++|+++....+.. .
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~-r~l~Gl~~p~~G~I~~~G~~~~~~~~~~-~   79 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLA-RLLAGLEKPSSGSILLDGKPLAPKKRAK-A   79 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHH-HHHhcccCCCCceEEECCcccCccccch-h
Confidence            489999999998         8999999999999999999999999999 999998        34554443322221 3


Q ss_pred             ccCCCeEEEccCc--eecceecCcchh-----------------HHHh------------------------hchhhhcc
Q 026304           72 RYAIDSVVTHDGA--KLPCWALPELTS-----------------FRQK------------------------LGDDAYAK  108 (240)
Q Consensus        72 ~~~~~~~v~q~~~--~~~~~~~~~~~~-----------------~~~~------------------------~~~~l~~~  108 (240)
                      +++...+|||++.  +-|..++.+.+.                 +...                        +...+..+
T Consensus        80 ~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~  159 (252)
T COG1124          80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPE  159 (252)
T ss_pred             hccceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccC
Confidence            3445689999864  445555542211                 1111                        01236889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++||+|||++      +.+++++|.++.++.+.|+|++|||+..+          ..+||||++|++ .++..++.+.
T Consensus       160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v----------~~~cdRi~Vm~~G~ivE~~~~~~  228 (252)
T COG1124         160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----------EHMCDRIAVMDNGQIVEIGPTEE  228 (252)
T ss_pred             CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHH----------HHHhhheeeeeCCeEEEeechhh
Confidence            99999999988      56899999999988999999999999999          999999999999 8887776544

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.1e-30  Score=233.65  Aligned_cols=158  Identities=18%  Similarity=0.117  Sum_probs=130.9

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .+|+++|++++|     ++++||++++||+++|+||||||||||| ++|+|+        .++|+++...++   .+ +.
T Consensus         5 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~---~~-r~   79 (351)
T PRK11432          5 NFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVL-RLVAGLEKPTEGQIFIDGEDVTHRSI---QQ-RD   79 (351)
T ss_pred             cEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHHCCCCCCceEEEECCEECCCCCH---HH-CC
Confidence            489999999998     8999999999999999999999999999 999997        345555443222   12 23


Q ss_pred             CeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lll  113 (240)
                      .+|+||+..+|+.+++.+|..+....                                          +..++.+|++||
T Consensus        80 ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL  159 (351)
T PRK11432         80 ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLL  159 (351)
T ss_pred             EEEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            58999999999999998887653210                                          112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +.++.+.|+++.++.|+|+|++|||.+++          ..+||||++|++ ++...|+++++
T Consensus       160 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~----------~~laD~i~vm~~G~i~~~g~~~~~  224 (351)
T PRK11432        160 FDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEA----------FAVSDTVIVMNKGKIMQIGSPQEL  224 (351)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            999988      45788889888775699999999999999          999999999999 99999988654

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.97  E-value=1.7e-30  Score=220.46  Aligned_cols=160  Identities=18%  Similarity=0.144  Sum_probs=121.8

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccCCC
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYAID   76 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~~~   76 (240)
                      |+++|+++.|     ++|+||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++.. .......
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i   79 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLL-RLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM   79 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence            4788999988     8999999999999999999999999999 9999972        2343332221110 1112235


Q ss_pred             eEEEccCceecceecCcchhHHHh--------------------h-----------------------chhhhccCcEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK--------------------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~--------------------~-----------------------~~~l~~~p~lll  113 (240)
                      +|++|+..+++.+++.++..+...                    +                       +..++.+|++||
T Consensus        80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll  159 (235)
T cd03261          80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL  159 (235)
T ss_pred             EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            899998887777777665433110                    0                       112588999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +..+++.|++++++.|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       160 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~  224 (235)
T cd03261         160 YDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTA----------FAIADRIAVLYDGKIVAEGTPEEL  224 (235)
T ss_pred             ecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH----------HHhcCEEEEEECCeEEEecCHHHH
Confidence            999988      45788999998764589999999999999          899999999998 88877776543

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.97  E-value=1.6e-30  Score=234.46  Aligned_cols=160  Identities=20%  Similarity=0.174  Sum_probs=131.3

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      ..++|+++|++++|     ++++||++++||+++|+||||||||||| ++|+|+        .++|+++...++.   + 
T Consensus        11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLL-r~IaGl~~p~~G~I~~~g~~i~~~~~~---~-   85 (375)
T PRK09452         11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVL-RLIAGFETPDSGRIMLDGQDITHVPAE---N-   85 (375)
T ss_pred             CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCHH---H-
Confidence            34589999999998     8899999999999999999999999999 999997        3455554433221   2 


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      +..+|+||+..+|+.+++.+|+.+....                                          +..++.+|++
T Consensus        86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l  165 (375)
T PRK09452         86 RHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV  165 (375)
T ss_pred             CCEEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            2358999999999999998887653210                                          1125899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||||++      +..+.+.|+++.++.|.|+|++|||.+++          ..+||+|++|++ ++...|++.++
T Consensus       166 lLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea----------~~laDri~vl~~G~i~~~g~~~~i  232 (375)
T PRK09452        166 LLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEA----------LTMSDRIVVMRDGRIEQDGTPREI  232 (375)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999987      45788999998875699999999999999          999999999999 99988887643

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=9.3e-31  Score=217.86  Aligned_cols=160  Identities=18%  Similarity=0.159  Sum_probs=129.1

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CCceEEeeccc-hhcccCCCeEEEc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NGRNIAMIKSS-KDTRYAIDSVVTH   81 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g~~i~~~~~~-~~~~~~~~~~v~q   81 (240)
                      ++++++|+++|     ++|+||++++|++.+++|||||||||.+ |+|.|+. . .|. +...... ....+..+||+|.
T Consensus         2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtf-RmILglle~~~G~-I~~~g~~~~~~~~~rIGyLPE   79 (300)
T COG4152           2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTF-RMILGLLEPTEGE-ITWNGGPLSQEIKNRIGYLPE   79 (300)
T ss_pred             ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchH-HHHhccCCccCce-EEEcCcchhhhhhhhcccChh
Confidence            68999999999     9999999999999999999999999999 9999972 1 222 2221111 1112224699999


Q ss_pred             cCceecceecCcchhHHHhhchh------------------------------------------hhccCcEEEEcCccC
Q 026304           82 DGAKLPCWALPELTSFRQKLGDD------------------------------------------AYAKLDVIGIDEAQF  119 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------l~~~p~lllLDEP~~  119 (240)
                      ...+++.+++.+.+.+.+.+.+.                                          ++++|++++||||++
T Consensus        80 ERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS  159 (300)
T COG4152          80 ERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS  159 (300)
T ss_pred             hhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc
Confidence            99999999999887776554211                                          489999999999987


Q ss_pred             ------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                            .+.+.+.+.++++ .|.|||++||.|+.+          .++||++++|+. +.+..|+.....
T Consensus       160 GLDPVN~elLk~~I~~lk~-~GatIifSsH~Me~v----------EeLCD~llmL~kG~~V~~G~v~~ir  218 (300)
T COG4152         160 GLDPVNVELLKDAIFELKE-EGATIIFSSHRMEHV----------EELCDRLLMLKKGQTVLYGTVEDIR  218 (300)
T ss_pred             CCChhhHHHHHHHHHHHHh-cCCEEEEecchHHHH----------HHHhhhhheecCCceEEeccHHHHH
Confidence                  3467788889987 799999999999999          999999999999 888888875443

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.97  E-value=4.4e-30  Score=225.91  Aligned_cols=158  Identities=17%  Similarity=0.074  Sum_probs=124.9

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      .+|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...  .... ...
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~-~~~   78 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIA-RMLLGMISPDRGKITVLGEPVPSR--ARLA-RVA   78 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccc--HHHH-hhc
Confidence            479999999998     8999999999999999999999999999 9999972        233332211  1111 223


Q ss_pred             CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll  113 (240)
                      .+|++|+..+++.+++.++..+...                   +                       +..++.+|++||
T Consensus        79 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  158 (303)
T TIGR01288        79 IGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLI  158 (303)
T ss_pred             EEEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            5899999887777777666542110                   0                       111589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||||+      +..++++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       159 LDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  222 (303)
T TIGR01288       159 LDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEA----------ERLCDRLCVLESGRKIAEGRPHAL  222 (303)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            999988      4578999999876 699999999999999          899999999999 88888887654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3e-30  Score=211.09  Aligned_cols=162  Identities=17%  Similarity=0.134  Sum_probs=129.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------------hhCCceEEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------------SDNGRNIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------------~~~g~~i~~~~~~~   69 (240)
                      .+.++++||++.|     |++||++|+++++++++||||||||||| |+++++             .++|+++.......
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~L-R~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~   83 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLL-RCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV   83 (253)
T ss_pred             cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHH-HHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence            4579999999999     9999999999999999999999999999 999886             34666665432221


Q ss_pred             -hcccCCCeEEEccCceecceecCcchhHHHhh----------------------------------------------c
Q 026304           70 -DTRYAIDSVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------G  102 (240)
Q Consensus        70 -~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~  102 (240)
                       ..|. ..|+|||.+.-|| +++++|..+..++                                              +
T Consensus        84 ~~lRr-~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA  161 (253)
T COG1117          84 VELRR-RVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA  161 (253)
T ss_pred             HHHHH-HheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence             1222 3599999999999 7888877664332                                              1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      +.++.+|++||||||++      ...+-+++.++++  .-||++|||+|..+          .+++|+..++.. +++..
T Consensus       162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQA----------aRvSD~taFf~~G~LvE~  229 (253)
T COG1117         162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQA----------ARVSDYTAFFYLGELVEF  229 (253)
T ss_pred             HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHHH----------HHHhHhhhhhcccEEEEE
Confidence            12588999999999998      2368888889875  68999999999999          999999999999 88888


Q ss_pred             CCcce-eeee
Q 026304          176 GKRAF-FTLR  184 (240)
Q Consensus       176 g~~~~-~~~~  184 (240)
                      |+.+. |+..
T Consensus       230 g~T~~iF~~P  239 (253)
T COG1117         230 GPTDKIFTNP  239 (253)
T ss_pred             cCHHhhhcCc
Confidence            87664 4443

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.2e-30  Score=231.90  Aligned_cols=159  Identities=14%  Similarity=0.129  Sum_probs=129.8

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++|+++|++++|     ++++||++++|++++|+||||||||||| ++|+|+        .++|+++...++   .+ +
T Consensus        17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~---~~-r   91 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLL-RMLAGFEQPTAGQIMLDGVDLSHVPP---YQ-R   91 (377)
T ss_pred             CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCH---HH-C
Confidence            3479999999998     8899999999999999999999999999 999998        234554433222   12 2


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll  112 (240)
                      ..+|+||+..+|+.+++.+|+.+....                                          +..++.+|++|
T Consensus        92 ~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL  171 (377)
T PRK11607         92 PINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL  171 (377)
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            358999999999999999887653210                                          11258999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||||++      +..+.+.|+++.++.|.|+|++|||.+++          ..+|||+++|++ ++...|+++++
T Consensus       172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea----------~~laDri~vl~~G~i~~~g~~~~~  237 (377)
T PRK11607        172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEA----------MTMAGRIAIMNRGKFVQIGEPEEI  237 (377)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEeCCEEEEEcCHHHH
Confidence            9999988      44677788888765689999999999999          999999999999 99988987643

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=9.5e-30  Score=208.08  Aligned_cols=149  Identities=18%  Similarity=0.135  Sum_probs=118.5

Q ss_pred             ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304            9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus         9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      +||+++|++++| ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++... .....+|+
T Consensus         3 ~~l~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~~i~~~   80 (182)
T cd03215           3 PVLEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELA-EALFGLRPPASGEITLDGKPVTRRSPRDA-IRAGIAYV   80 (182)
T ss_pred             cEEEEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccCHHHH-HhCCeEEe
Confidence            489999999999 9999999999999999999999999999 9999972        34444332221111 12235899


Q ss_pred             EccC---ceecceecCcchhHHHh----------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEE
Q 026304           80 THDG---AKLPCWALPELTSFRQK----------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVV  140 (240)
Q Consensus        80 ~q~~---~~~~~~~~~~~~~~~~~----------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~  140 (240)
                      +|+.   .+++..++.++..+...          ++..++.+|++|+||||++      +..+.+.++++.+ .+.|+|+
T Consensus        81 ~q~~~~~~~~~~~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii  159 (182)
T cd03215          81 PEDRKREGLVLDLSVAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLL  159 (182)
T ss_pred             cCCcccCcccCCCcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence            9984   46777788887765321          2445789999999999988      4578899998876 5899999


Q ss_pred             EecChhhhhcccchHHHHHhhccceeeecc
Q 026304          141 AGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       141 vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +||+++++          ..+||++++|++
T Consensus       160 ~sh~~~~~----------~~~~d~v~~l~~  179 (182)
T cd03215         160 ISSELDEL----------LGLCDRILVMYE  179 (182)
T ss_pred             EeCCHHHH----------HHhCCEEEEecC
Confidence            99999999          899999999976

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.6e-30  Score=217.07  Aligned_cols=161  Identities=17%  Similarity=0.217  Sum_probs=123.0

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .+||+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|+++...+... ....
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~-~~~~   80 (237)
T PRK11614          3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLL-GTLCGDPRATSGRIVFDGKDITDWQTAK-IMRE   80 (237)
T ss_pred             ccEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEecCCCCHHH-HHHh
Confidence            3589999999998     8999999999999999999999999999 9999972        2333332221111 1122


Q ss_pred             CCeEEEccCceecceecCcchhHHH-----------------hh------------------------chhhhccCcEEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ-----------------KL------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~-----------------~~------------------------~~~l~~~p~lll  113 (240)
                      ..+|++|+..+++..++.++..+..                 .+                        +..++.+|++|+
T Consensus        81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill  160 (237)
T PRK11614         81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL  160 (237)
T ss_pred             CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence            3588999877776666654432210                 00                        112588999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      ...+.+.|+++++ +|.|||++|||++++          ..+|||+++|++ ++...|+++.+
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~  224 (237)
T PRK11614        161 LDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNANQA----------LKLADRGYVLENGHVVLEDTGDAL  224 (237)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHH----------HhhCCEEEEEeCCEEEeeCCHHHH
Confidence            999987      4578899998876 689999999999999          899999999999 88888877654

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.3e-30  Score=228.98  Aligned_cols=161  Identities=17%  Similarity=0.140  Sum_probs=125.5

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-c
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-T   71 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~   71 (240)
                      ||+++|++++|         ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...+.... .
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLl-k~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~   79 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLI-RCINLLERPTSGRVLVDGQDLTALSEKELRK   79 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHH
Confidence            68999999876         6899999999999999999999999999 9999972        34444433222111 1


Q ss_pred             ccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKL  109 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p  109 (240)
                      .....+|++|+..+++.+++.++..+....                                          ...++.+|
T Consensus        80 ~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p  159 (343)
T PRK11153         80 ARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNP  159 (343)
T ss_pred             HhcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence            122358999998888877777665442110                                          11258899


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|||||||+      +..++++|+++.++.|+|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i----------~~~~d~v~~l~~G~i~~~g~~~~~  228 (343)
T PRK11153        160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVV----------KRICDRVAVIDAGRLVEQGTVSEV  228 (343)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999988      45789999998764589999999999999          899999999999 88888876543

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=4e-31  Score=214.24  Aligned_cols=161  Identities=17%  Similarity=0.151  Sum_probs=140.7

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .+|.++|+.|+|     +++|||++++||+++++|||||||||.+ .++.|+        .+++.+++.+|...+.|.+.
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~F-ymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi   81 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTF-YMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI   81 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEE-EEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence            468999999999     8999999999999999999999999999 999997        56888999988888888874


Q ss_pred             CeEEEccCceecceecCcchhHHHhh--------------------------------------------chhhhccCcE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~l~~~p~l  111 (240)
                       +|++|+...|..+|+.+|......+                                            +..++.+|++
T Consensus        82 -gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f  160 (243)
T COG1137          82 -GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF  160 (243)
T ss_pred             -ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE
Confidence             8999999999999998876432110                                            1226899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      +|||||++      ..++.++++.+++ .|..|+++-|+..+.          ..+|||.+++.+ ++.+.|+|+++.
T Consensus       161 iLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVREt----------L~i~dRaYIi~~G~vla~G~p~ei~  227 (243)
T COG1137         161 ILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVRET----------LDICDRAYIISDGKVLAEGSPEEIV  227 (243)
T ss_pred             EEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHHHH----------HhhhheEEEEecCeEEecCCHHHHh
Confidence            99999977      4588899999987 799999999999999          999999999999 999999998643

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.96  E-value=7.2e-30  Score=213.86  Aligned_cols=149  Identities=19%  Similarity=0.153  Sum_probs=114.6

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hccc
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~   73 (240)
                      ||+++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++.. ....
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   79 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFL-KLILGIEKPTRGKIRFNGQDLTRLRGREIPFLR   79 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEehhhcChhHHHHHH
Confidence            58899999887       7899999999999999999999999999 9999972        2343332221111 0111


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~l  111 (240)
                      ...+|++|+..+++.+++.++..+...                   +                       ...++.+|++
T Consensus        80 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  159 (216)
T TIGR00960        80 RHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL  159 (216)
T ss_pred             HhceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            235899999888877777766543210                   0                       1125899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ||||||++      +..+.++|+++++ .|.|||++|||++++          ..+||++++|++
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~----------~~~~d~i~~l~~  213 (216)
T TIGR00960       160 LLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDINLV----------ETYRHRTLTLSR  213 (216)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence            99999988      4578899998876 589999999999999          889999999976

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.5e-30  Score=215.67  Aligned_cols=159  Identities=16%  Similarity=0.159  Sum_probs=121.0

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .|++++++++.|      ++++||++++|+.++|+||||||||||+ ++++|+.        ++|.++... .......+
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~-~~l~GLl~p~~G~v~~~g~~~~~~-~~~~~~~~   79 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLL-KLLNGLLKPTSGEVLVDGLDTSSE-KSLLELRQ   79 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCcCcCCCCEEEECCeeccch-hhHHHhhc
Confidence            478999999998      8899999999999999999999999999 9999982        233332210 11111223


Q ss_pred             CCeEEEccC--ceecceecCcchhHHH------------h------------------------------hchhhhccCc
Q 026304           75 IDSVVTHDG--AKLPCWALPELTSFRQ------------K------------------------------LGDDAYAKLD  110 (240)
Q Consensus        75 ~~~~v~q~~--~~~~~~~~~~~~~~~~------------~------------------------------~~~~l~~~p~  110 (240)
                      ..|+|||++  +++.. ++.+...|..            +                              +++.++.+|+
T Consensus        80 ~vG~VfQnpd~q~~~~-tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~  158 (235)
T COG1122          80 KVGLVFQNPDDQLFGP-TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE  158 (235)
T ss_pred             ceEEEEECcccccccC-cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence            459999986  33332 3332222210            0                              1233699999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|+|||||+      +.+++++++++.++.|+|||++|||++++          ..+|||+++|++ ++..+|+|..
T Consensus       159 iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~----------~~~ad~v~vl~~G~i~~~g~p~~  225 (235)
T COG1122         159 ILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELV----------LEYADRVVVLDDGKILADGDPAE  225 (235)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHH----------HhhCCEEEEEECCEEeecCCHHH
Confidence            999999999      45899999999985589999999999999          999999999999 9989998754

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.96  E-value=4.8e-30  Score=232.87  Aligned_cols=158  Identities=21%  Similarity=0.174  Sum_probs=125.1

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++|++++|     ++++||++++||+++|+||||||||||| |+|+|+        .++|+++...+....  .+.
T Consensus         2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLL-k~LaGll~p~sG~I~l~G~~i~~~~~~~~--~~~   78 (402)
T PRK09536          2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLL-RAINGTLTPTAGTVLVAGDDVEALSARAA--SRR   78 (402)
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEEcCcCCHHHH--hcc
Confidence            479999999999     9999999999999999999999999999 999997        234444433222111  223


Q ss_pred             CeEEEccCceecceecCcchhHHH----------------h------------------------------hchhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ----------------K------------------------------LGDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~----------------~------------------------------~~~~l~~~p  109 (240)
                      .++++|+..++..+++.++..+..                .                              +...++++|
T Consensus        79 ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P  158 (402)
T PRK09536         79 VASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQAT  158 (402)
T ss_pred             eEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            589999887766666655442210                0                              011258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ++||||||++      +.+++++|+++++ +|+|||++|||++++          .++|||+++|++ ++...|++++
T Consensus       159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~~~----------~~~adrii~l~~G~iv~~G~~~e  225 (402)
T PRK09536        159 PVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLDLA----------ARYCDELVLLADGRVRAAGPPAD  225 (402)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEecCHHH
Confidence            9999999988      4579999999986 689999999999999          999999999999 9989998875

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.96  E-value=6.1e-30  Score=229.17  Aligned_cols=157  Identities=17%  Similarity=0.148  Sum_probs=127.6

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++++||+|++||+++|+||||||||||| ++|+|+        .++|+++...++    +.+..
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLL-r~IaGl~~p~~G~I~i~g~~i~~~~~----~~r~i   76 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLL-RIIAGLEHQTSGHIRFHGTDVSRLHA----RDRKV   76 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCH----HHCCE
Confidence            58999999998     8999999999999999999999999999 999997        234554432211    11235


Q ss_pred             eEEEccCceecceecCcchhHHHhh----------------------------------------------chhhhccCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------GDDAYAKLD  110 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~l~~~p~  110 (240)
                      +|++|+..+++.+++.+|..+....                                              +..++.+|+
T Consensus        77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~  156 (353)
T PRK10851         77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQ  156 (353)
T ss_pred             EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            8999999999988887766542110                                              112589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      +.++.+.|+++.++.|.|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       157 llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea----------~~~~Dri~vl~~G~i~~~g~~~~i  224 (353)
T PRK10851        157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEA----------MEVADRVVVMSQGNIEQAGTPDQV  224 (353)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999987      45788999998875689999999999999          999999999999 99888887653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.3e-30  Score=230.06  Aligned_cols=157  Identities=24%  Similarity=0.211  Sum_probs=126.3

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++++||+|++|++++|+||||||||||| ++|+|+.        ++|+++...++   .+ ...
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL-~~iaGl~~p~~G~I~~~g~~i~~~~~---~~-~~i   77 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLEDITSGDLFIGEKRMNDVPP---AE-RGV   77 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECCCCCH---hH-CCE
Confidence            68999999998     8999999999999999999999999999 9999972        33444322211   11 235


Q ss_pred             eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL  114 (240)
                      +|++|+..+++.+++.++..+....                                          +..++.+|++|||
T Consensus        78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLL  157 (369)
T PRK11000         78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL  157 (369)
T ss_pred             EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            8999999999888888776542110                                          1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +..+.+.|+++.++.|.|+|++|||++++          ..+||++++|++ ++...|+++++
T Consensus       158 DEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~----------~~~~d~i~vl~~G~i~~~g~~~~i  221 (369)
T PRK11000        158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA----------MTLADKIVVLDAGRVAQVGKPLEL  221 (369)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99988      45788889988764589999999999999          999999999999 88888877543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.96  E-value=1.1e-29  Score=214.87  Aligned_cols=157  Identities=15%  Similarity=0.115  Sum_probs=120.2

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++.+|++++|+||||||||||+ ++|+|+.        ++|+++...+.....+ ...+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~   78 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTF-YMIVGLVKPDSGKILLDGQDITKLPMHKRAR-LGIG   78 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccCCHhHHHh-ccEE
Confidence            4788999988     8999999999999999999999999999 9999972        2333332221111111 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++.+++.++..+...                   +                       ...++.+|++|+||
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD  158 (232)
T cd03218          79 YLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD  158 (232)
T ss_pred             EecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence            99998888777777665543210                   0                       11158899999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ||++      +..+.++|+++.+ .+.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       159 EPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  219 (232)
T cd03218         159 EPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVRET----------LSITDRAYIIYEGKVLAEGTPEE  219 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEEeCHHH
Confidence            9988      4578899998876 689999999999999          899999999998 8776666543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.96  E-value=1.3e-29  Score=211.87  Aligned_cols=150  Identities=21%  Similarity=0.195  Sum_probs=114.7

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ++++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+.    .....+
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~----~~~~i~   75 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLL-RLIAGLERPDSGEILIDGRDVTGVPP----ERRNIG   75 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcCcCch----hhccEE
Confidence            4688999988     8999999999999999999999999999 9999972        23333321111    112358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++..++.++..+...                   +                       ...++.+|++||||
T Consensus        76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD  155 (213)
T cd03259          76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD  155 (213)
T ss_pred             EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99998777766666655432110                   0                       11258899999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ||++      +..++++|++++++.|.|||++|||++++          ..+||++++|++ ++...
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~v~~l~~G~i~~~  212 (213)
T cd03259         156 EPLSALDAKLREELREELKELQRELGITTIYVTHDQEEA----------LALADRIAVMNEGRIVQV  212 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH----------HHhcCEEEEEECCEEEec
Confidence            9988      45788999998764589999999999999          899999999998 66543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.96  E-value=9e-30  Score=228.63  Aligned_cols=157  Identities=18%  Similarity=0.173  Sum_probs=127.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--C--C------ceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--N--G------RNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~--g------~~i~~~~~~~~~~~~   74 (240)
                      .|+++|++++|     ++++||+|++|++++|+||||||||||| ++|+|+..  .  |      +++...++    +.+
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~~~G~i~~~g~~~~~~~~----~~r   79 (362)
T TIGR03258         5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLL-RAIAGFVKAAGLTGRIAIADRDLTHAPP----HKR   79 (362)
T ss_pred             EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCEEEEECCEECCCCCH----HHC
Confidence            58999999998     8999999999999999999999999999 99999732  2  3      22211111    112


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll  112 (240)
                      ..+|+||+..+++.+++.+|+.+....                                          +..++.+|++|
T Consensus        80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~ll  159 (362)
T TIGR03258        80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL  159 (362)
T ss_pred             CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            358999999999999999887653211                                          11258999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcC-CCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHD-GKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~-g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||||++      +.++.+.|+++.++. |+|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       160 LLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea----------~~l~dri~vl~~G~i~~~g~~~~~  226 (362)
T TIGR03258       160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDA----------LTLADKAGIMKDGRLAAHGEPQAL  226 (362)
T ss_pred             EEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999987      457889999888744 89999999999999          999999999999 99999987654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.96  E-value=1.1e-29  Score=213.37  Aligned_cols=156  Identities=22%  Similarity=0.258  Sum_probs=118.9

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++....+ ...+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~~i~   78 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLL-KTIMGLLPPRSGSIRFDGRDITGLPPHERAR-AGIG   78 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCCCCHHHHHh-cCeE
Confidence            4788999988     8999999999999999999999999999 9999972        2333332221111112 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-----------------h------------------------chhhhccCcEEEEcC
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-----------------L------------------------GDDAYAKLDVIGIDE  116 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-----------------~------------------------~~~l~~~p~lllLDE  116 (240)
                      |++|+..+++.+++.++..+...                 +                        ...++.+|++|+|||
T Consensus        79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE  158 (222)
T cd03224          79 YVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDE  158 (222)
T ss_pred             EeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            99998877777666654432110                 0                        112588999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      |++      +..++++|+++++ .+.|||++|||++++          ..+||++++|++ ++...|+++
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~  217 (222)
T cd03224         159 PSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFA----------LEIADRAYVLERGRVVLEGTAA  217 (222)
T ss_pred             CcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhccEEEEeeCCeEEEeCCHH
Confidence            988      4578999999876 689999999999999          899999999998 777666654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=6.7e-30  Score=208.87  Aligned_cols=157  Identities=18%  Similarity=0.186  Sum_probs=122.1

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+.+|+|++.     ++++||++.+||+.+|+||||||||||| |.++|.        .++|.+...+++....+.  .
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlL-k~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~--r   77 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLL-KALSGELSPDSGEVTLNGVPLNSWPPEELARH--R   77 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHH-HHhhCccCCCCCeEeeCCcChhhCCHHHHHHH--h
Confidence            68999999987     9999999999999999999999999999 999996        345666666655544443  3


Q ss_pred             eEEEccCceecceecCcchhHHH-----------------h------------------hchh---------------hh
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ-----------------K------------------LGDD---------------AY  106 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~-----------------~------------------~~~~---------------l~  106 (240)
                      ++++|...+-..+++.+...+..                 .                  -+|+               ..
T Consensus        78 aVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v  157 (259)
T COG4559          78 AVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPV  157 (259)
T ss_pred             hhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCC
Confidence            67787665433344443222210                 0                  0111               14


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .++++|+|||||+      +..++.+.+++++ .|..|+++-||++.+          ..|||||++|++ ++++||+|.
T Consensus       158 ~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~-~g~~V~~VLHDLNLA----------A~YaDrivll~~Grv~a~g~p~  226 (259)
T COG4559         158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR-EGGAVLAVLHDLNLA----------AQYADRIVLLHQGRVIASGSPQ  226 (259)
T ss_pred             CCCceEEecCCccccchHHHHHHHHHHHHHHh-cCCcEEEEEccchHH----------HHhhheeeeeeCCeEeecCCHH
Confidence            5667999999998      4578899999998 689999999999999          999999999999 999999987


Q ss_pred             e
Q 026304          180 F  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       227 ~  227 (259)
T COG4559         227 D  227 (259)
T ss_pred             H
Confidence            4

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.96  E-value=1.6e-29  Score=218.80  Aligned_cols=163  Identities=23%  Similarity=0.194  Sum_probs=124.5

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-ccc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-TRY   73 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~~~   73 (240)
                      .++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...+.... ...
T Consensus         5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~   83 (269)
T PRK11831          5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLL-RLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR   83 (269)
T ss_pred             cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence            3589999999998     8999999999999999999999999999 9999972        23333322211110 111


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh--------------------h-----------------------chhhhccCc
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK--------------------L-----------------------GDDAYAKLD  110 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~--------------------~-----------------------~~~l~~~p~  110 (240)
                      ...+|++|+..+++.+++.++..+...                    +                       ...++.+|+
T Consensus        84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~  163 (269)
T PRK11831         84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD  163 (269)
T ss_pred             hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            235899998877777676665432100                    0                       112588999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      +..+.++|+++.++.|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~  231 (269)
T PRK11831        164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEV----------LSIADHAYIVADKKIVAHGSAQAL  231 (269)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH----------HHhhCEEEEEECCEEEEeCCHHHH
Confidence            999999988      45788999998764589999999999999          899999999998 88888876643

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.96  E-value=1.8e-29  Score=214.00  Aligned_cols=158  Identities=22%  Similarity=0.172  Sum_probs=119.7

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++....+ ...+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~-~~i~   78 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLF-NLISGFLRPTSGSVLFDGEDITGLPPHEIAR-LGIG   78 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCceEEECCEECCCCCHHHHHh-cCEE
Confidence            4688999988     8999999999999999999999999999 9999972        2233322211111111 2358


Q ss_pred             EEEccCceecceecCcchhHHH----------------------h-------h-----------------------chhh
Q 026304           78 VVTHDGAKLPCWALPELTSFRQ----------------------K-------L-----------------------GDDA  105 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~----------------------~-------~-----------------------~~~l  105 (240)
                      |++|+..+++.+++.++..+..                      .       +                       ...+
T Consensus        79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  158 (236)
T cd03219          79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARAL  158 (236)
T ss_pred             EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHH
Confidence            9999887777767665543210                      0       0                       1115


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|+||||++      +..++++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|++
T Consensus       159 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~~~----------~~~~d~i~~l~~G~i~~~~~~  227 (236)
T cd03219         159 ATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVV----------MSLADRVTVLDQGRVIAEGTP  227 (236)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEeCCEEEeecCH
Confidence            88999999999988      4578899999886 689999999999999          899999999998 88777776


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +.+
T Consensus       228 ~~~  230 (236)
T cd03219         228 DEV  230 (236)
T ss_pred             HHh
Confidence            543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.96  E-value=1.9e-29  Score=212.02  Aligned_cols=155  Identities=17%  Similarity=0.153  Sum_probs=118.2

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++.+||+++|+||||||||||+ ++|+|+.        ++|.++... + ...+ ...+
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~-~-~~~~-~~i~   76 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTI-KMLTTLLKPTSGRATVAGHDVVRE-P-REVR-RRIG   76 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecCcC-h-HHHh-hcEE
Confidence            4789999988     8999999999999999999999999999 9999972        223322110 1 1112 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++.+++.++..+...                   +                       ...++.+|++|+||
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD  156 (220)
T cd03265          77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD  156 (220)
T ss_pred             EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99998877777676655433110                   0                       11258999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      ||++      ...+.++|+++.++.|.|||++|||++++          ..+||++++|++ ++...++++
T Consensus       157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~  217 (220)
T cd03265         157 EPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEA----------EQLCDRVAIIDHGRIIAEGTPE  217 (220)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEEeCChH
Confidence            9988      45788889988764489999999999999          899999999998 887766654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.3e-29  Score=215.85  Aligned_cols=161  Identities=14%  Similarity=0.079  Sum_probs=121.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .+||+++|+++.|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+.....+. 
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~-   80 (255)
T PRK11300          3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVF-NCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-   80 (255)
T ss_pred             CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHH-HHHhCCcCCCcceEEECCEECCCCCHHHHHhc-
Confidence            4589999999998     8999999999999999999999999999 9999982        23333322111111122 


Q ss_pred             CCeEEEccCceecceecCcchhHH----------------------------------Hhh-------------------
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR----------------------------------QKL-------------------  101 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~----------------------------------~~~-------------------  101 (240)
                      ..+|++|+..+++.+++.++..+.                                  ..+                   
T Consensus        81 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~q  160 (255)
T PRK11300         81 GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQR  160 (255)
T ss_pred             CeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHH
Confidence            246789988777766665543321                                  000                   


Q ss_pred             ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304          102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-  170 (240)
Q Consensus       102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-  170 (240)
                          ...++.+|++||||||++      +..+.++|.+++++.|.|||++||+++++          ..+||++++|++ 
T Consensus       161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~----------~~~~d~i~~l~~g  230 (255)
T PRK11300        161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLV----------MGISDRIYVVNQG  230 (255)
T ss_pred             HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence                112588999999999988      45788999988764489999999999999          899999999998 


Q ss_pred             eeeccCCcce
Q 026304          171 RCELCGKRAF  180 (240)
Q Consensus       171 ~~~~~g~~~~  180 (240)
                      ++...|++++
T Consensus       231 ~i~~~~~~~~  240 (255)
T PRK11300        231 TPLANGTPEE  240 (255)
T ss_pred             eEEecCCHHH
Confidence            8877777654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=2e-29  Score=214.44  Aligned_cols=159  Identities=18%  Similarity=0.154  Sum_probs=121.3

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++|+||++++||+++|+||||||||||+ ++|+|+.        ++|.++...+..........
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   79 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLL-RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA   79 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence            58899999988     8999999999999999999999999999 9999972        23333322111111112235


Q ss_pred             eEEEccCceecceecCcchhHHHh--------------------h-----------------------chhhhccCcEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK--------------------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~--------------------~-----------------------~~~l~~~p~lll  113 (240)
                      +|++|+..+++.+++.++..+...                    +                       ...++.+|++|+
T Consensus        80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  159 (240)
T PRK09493         80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLML  159 (240)
T ss_pred             EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence            899998877776666655433110                    0                       112588999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ||||++      +..+.++|+++++ +|+|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       160 lDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~  222 (240)
T PRK09493        160 FDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIGFA----------EKVASRLIFIDKGRIAEDGDPQV  222 (240)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeeCCHHH
Confidence            999987      4578899998876 689999999999999          899999999999 8887777654

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.96  E-value=2.2e-29  Score=214.23  Aligned_cols=157  Identities=20%  Similarity=0.148  Sum_probs=120.4

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+.    .....
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~i   76 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLL-RLIAGLERPDSGTILFGGEDATDVPV----QERNV   76 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCc----cccce
Confidence            58999999998     9999999999999999999999999999 9999972        23333221111    11235


Q ss_pred             eEEEccCceecceecCcchhHHH----------------h-------h-----------------------chhhhccCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ----------------K-------L-----------------------GDDAYAKLD  110 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~----------------~-------~-----------------------~~~l~~~p~  110 (240)
                      +|++|++.+++..++.++..+..                .       +                       ...++.+|+
T Consensus        77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  156 (239)
T cd03296          77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPK  156 (239)
T ss_pred             EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            89999877776666654433210                0       0                       112588999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      ...+.++|++++++.|+|||++|||++.+          ..+||++++|++ ++...|+++.+
T Consensus       157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~  224 (239)
T cd03296         157 VLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEA----------LEVADRVVVMNKGRIEQVGTPDEV  224 (239)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEecCHHHH
Confidence            999999988      45788999998764589999999999999          899999999998 88777776543

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.96  E-value=1.9e-29  Score=213.23  Aligned_cols=159  Identities=16%  Similarity=0.138  Sum_probs=120.9

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++||++.|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++...++.... ....+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~-~~~i~   78 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLL-KTLMGLLPVKSGSIRLDGEDITKLPPHERA-RAGIA   78 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHHHHH-HhCeE
Confidence            4789999988     8999999999999999999999999999 9999972        233332221111111 12358


Q ss_pred             EEEccCceecceecCcchhHHHh----------------h------------------------chhhhccCcEEEEcCc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK----------------L------------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~----------------~------------------------~~~l~~~p~lllLDEP  117 (240)
                      |++|+..+++.+++.++..+...                +                        ...++.+|++|+||||
T Consensus        79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP  158 (230)
T TIGR03410        79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP  158 (230)
T ss_pred             EeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            99999887776666655432110                0                        1125889999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++      +..+.++|.+++++.+.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~v~~l~~g~i~~~~~~~~~  219 (230)
T TIGR03410       159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFA----------RELADRYYVMERGRVVASGAGDEL  219 (230)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHc
Confidence            88      45788999988764589999999999999          889999999999 88878876654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.1e-29  Score=219.60  Aligned_cols=164  Identities=18%  Similarity=0.146  Sum_probs=122.5

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcc
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTR   72 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~   72 (240)
                      .++||+++|+++.|      ++++||+|.+||+++|+||||||||||+ ++|+|+.        ++|.++..........
T Consensus         2 ~~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~   80 (283)
T PRK13636          2 EDYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLF-QNLNGILKPSSGRILFDGKPIDYSRKGLMKL   80 (283)
T ss_pred             CCceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCccEEEECCEECCCCcchHHHH
Confidence            45689999999998      8899999999999999999999999999 9999972        3444432111111111


Q ss_pred             cCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304           73 YAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL  109 (240)
Q Consensus        73 ~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p  109 (240)
                      ....+|++|++. .+...++.++..+...                   +                       ...++.+|
T Consensus        81 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p  160 (283)
T PRK13636         81 RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP  160 (283)
T ss_pred             HhhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence            234589999862 2223455554432100                   0                       11258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|+||||++      +..+.++|++++++.|.||+++|||++++          ..+|||+++|++ ++...|+++.+
T Consensus       161 ~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~----------~~~~dri~~l~~G~i~~~g~~~~~  229 (283)
T PRK13636        161 KVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIV----------PLYCDNVFVMKEGRVILQGNPKEV  229 (283)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999999988      45788999998764589999999999999          889999999998 88888887654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.96  E-value=2.7e-29  Score=209.84  Aligned_cols=150  Identities=21%  Similarity=0.171  Sum_probs=115.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|+++.|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...++   .+ ...+
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~v~~~g~~~~~~~~---~~-~~i~   75 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTL-RMIAGLEEPTSGRIYIGGRDVTDLPP---KD-RDIA   75 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCCc---cc-ceEE
Confidence            4688999988     8999999999999999999999999999 9999972        23333221111   11 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++..++.++..+...                   +                       ...++.+|++|+||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD  155 (213)
T cd03301          76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD  155 (213)
T ss_pred             EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99998877766666655433110                   0                       11258899999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ||++      +..++++|++++++.|.|||++|||++++          ..+||++++|++ ++...
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~----------~~~~d~i~~l~~g~~~~~  212 (213)
T cd03301         156 EPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEA----------MTMADRIAVMNDGQIQQI  212 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCeEEEEECCEEEec
Confidence            9988      45788999998764589999999999999          899999999988 76544

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.96  E-value=2.8e-29  Score=212.59  Aligned_cols=160  Identities=16%  Similarity=0.110  Sum_probs=121.5

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-c
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-T   71 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~   71 (240)
                      ||+++|++++|         ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...++... .
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLI-RCINGLERPTSGSVLVDGTDLTLLSGKELRK   79 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHH
Confidence            57889998876         6899999999999999999999999999 9999972        34444432221110 1


Q ss_pred             ccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL  109 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p  109 (240)
                      .....+|++|+..+++.+++.++..+...                   +                       ...++.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (233)
T cd03258          80 ARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNP  159 (233)
T ss_pred             HHhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            12235899999888877777665543210                   0                       11158899


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ++|+||||++      +..+.++|++++++.|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  227 (233)
T cd03258         160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVV----------KRICDRVAVMEKGEVVEEGTVEE  227 (233)
T ss_pred             CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEecCHHH
Confidence            9999999988      45788999998764589999999999999          899999999998 8877776543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=3.2e-29  Score=226.04  Aligned_cols=153  Identities=20%  Similarity=0.258  Sum_probs=132.9

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      +.+++++++|.|     +++|||++++||+.+|+|.||||||||+ ++|.|+        .++|+.+...+|....+.+ 
T Consensus         3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm-~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G-   80 (501)
T COG3845           3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLM-KILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG-   80 (501)
T ss_pred             ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHH-HHHhCcccCCcceEEECCEEeccCCHHHHHHcC-
Confidence            478999999999     8999999999999999999999999999 999997        4688888877777666666 


Q ss_pred             CeEEEccCceecceecCcchhHHHh----------------------hc-----------------------hhhhccCc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK----------------------LG-----------------------DDAYAKLD  110 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~~-----------------------~~l~~~p~  110 (240)
                      +|+|+|+..+++.+|+.+|.-+...                      ++                       ..++.+|+
T Consensus        81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~  160 (501)
T COG3845          81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR  160 (501)
T ss_pred             CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence            5999999999999999988655321                      00                       01589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +|||||||+      .+++++.++++++ .|+|||++||-++++          .++|||+-+|.. +++.
T Consensus       161 iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~Ev----------~~iaDrvTVLR~Gkvvg  220 (501)
T COG3845         161 LLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLKEV----------MAIADRVTVLRRGKVVG  220 (501)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHH----------HHhhCeeEEEeCCeEEe
Confidence            999999998      3589999999998 799999999999999          999999999999 7764

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.96  E-value=3.6e-29  Score=208.46  Aligned_cols=149  Identities=19%  Similarity=0.150  Sum_probs=115.8

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...   .. .....+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~---~~-~~~~i~   75 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTM-KIILGLIKPDSGEITFDGKSYQKN---IE-ALRRIG   75 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCCcccch---HH-HHhhEE
Confidence            4788999988     9999999999999999999999999999 9999972        233333211   11 122358


Q ss_pred             EEEccCceecceecCcchhHHHh---------------h-----------------------chhhhccCcEEEEcCccC
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK---------------L-----------------------GDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~l~~~p~lllLDEP~~  119 (240)
                      |++|+..+++..++.++..+...               +                       ...++.+|++|+||||++
T Consensus        76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  155 (208)
T cd03268          76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN  155 (208)
T ss_pred             EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence            99998877777777766543211               0                       111588999999999988


Q ss_pred             ------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                            +..+.++|+++++ +|.|||++|||++++          ..+||++++|++ ++...
T Consensus       156 ~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~----------~~~~d~v~~l~~g~i~~~  207 (208)
T cd03268         156 GLDPDGIKELRELILSLRD-QGITVLISSHLLSEI----------QKVADRIGIINKGKLIEE  207 (208)
T ss_pred             cCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HHhcCEEEEEECCEEEec
Confidence                  4578899998886 689999999999999          899999999998 76543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.6e-29  Score=213.86  Aligned_cols=159  Identities=15%  Similarity=0.117  Sum_probs=120.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      |++++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++....+ ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~i   80 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTF-YMVVGIVPRDAGNIIIDDEDISLLPLHARAR-RGI   80 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHH-hCe
Confidence            79999999998     8999999999999999999999999999 9999972        2333332211111112 235


Q ss_pred             eEEEccCceecceecCcchhHHH-------------h-------h-----------------------chhhhccCcEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ-------------K-------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-----------------------~~~l~~~p~lll  113 (240)
                      +|++|+..+++.+++.++..+..             .       +                       +..++.+|++|+
T Consensus        81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (241)
T PRK10895         81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL  160 (241)
T ss_pred             EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            89999887776666655433210             0       0                       112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +..+.++++++++ +|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~~  224 (241)
T PRK10895        161 LDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVRET----------LAVCERAYIVSQGHLIAHGTPTEI  224 (241)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHH----------HHhcCEEEEEeCCeEEeeCCHHHH
Confidence            999987      4567888888876 689999999999999          899999999998 88877776543

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.2e-30  Score=209.58  Aligned_cols=160  Identities=21%  Similarity=0.204  Sum_probs=124.6

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      |++++|++++|     ++++|++|++|.+++|+||||||||||| .+++++        .++|.++...+.....+.  .
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLL-S~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~--l   77 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRLLKKDSGEITIDGLELTSTPSKELAKK--L   77 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHH-HHHHHhccccCceEEEeeeecccCChHHHHHH--H
Confidence            68999999999     9999999999999999999999999999 999887        457777776654433221  1


Q ss_pred             eEEEccCceecceecCcchhHH------------------------------Hh----h-chh---------hhccCcEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFR------------------------------QK----L-GDD---------AYAKLDVI  112 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~------------------------------~~----~-~~~---------l~~~p~ll  112 (240)
                      .++-|.+.....+|+.+...|.                              .+    + ||+         ++++.+++
T Consensus        78 SILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyv  157 (252)
T COG4604          78 SILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYV  157 (252)
T ss_pred             HHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEE
Confidence            3344444433344444333221                              11    1 221         58999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      +||||.+      ..++++.|++++++.|+||++|-||++|+          ..|+|+|+-|++ +++..|+|+++.
T Consensus       158 lLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfA----------S~YsD~IVAlK~G~vv~~G~~~eii  224 (252)
T COG4604         158 LLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFA----------SCYSDHIVALKNGKVVKQGSPDEII  224 (252)
T ss_pred             EecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHH----------HhhhhheeeecCCEEEecCCHHHhc
Confidence            9999977      23799999999998999999999999999          999999999999 999999998643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.8e-29  Score=213.78  Aligned_cols=161  Identities=19%  Similarity=0.172  Sum_probs=120.5

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~   74 (240)
                      ||+++|++++|      ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++.. .....
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLL-RCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR   79 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence            57899999887      8899999999999999999999999999 9999972        2343333221111 11122


Q ss_pred             CCeEEEccCceecceecCcchhHH---------------------------Hhh-----------------------chh
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR---------------------------QKL-----------------------GDD  104 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~---------------------------~~~-----------------------~~~  104 (240)
                      ..+|++|+..+++.+++.++..+.                           ..+                       ...
T Consensus        80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  159 (243)
T TIGR02315        80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARA  159 (243)
T ss_pred             heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            358999987777666655443210                           000                       112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|+||||++      +..+.++|+++.++.|+|||++|||++++          .++||++++|++ ++...|+
T Consensus       160 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~  229 (243)
T TIGR02315       160 LAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA----------KKYADRIVGLKAGEIVFDGA  229 (243)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCeEEEEECCEEEecCC
Confidence            589999999999988      45788999988764589999999999999          899999999998 8887777


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      ++.+
T Consensus       230 ~~~~  233 (243)
T TIGR02315       230 PSEL  233 (243)
T ss_pred             HHHh
Confidence            6543

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.1e-29  Score=218.24  Aligned_cols=150  Identities=22%  Similarity=0.189  Sum_probs=126.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--cccCCCeEEEccCceeccee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRYAIDSVVTHDGAKLPCWA   90 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~~~~~~v~q~~~~~~~~~   90 (240)
                      ++|+||+++.||+++|+|-||||||||+ |+++++        .++|+++..++....  .|....++|||...++|..|
T Consensus        44 v~~~sl~v~~GeIfViMGLSGSGKSTLv-R~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt  122 (386)
T COG4175          44 VNDASLDVEEGEIFVIMGLSGSGKSTLV-RLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT  122 (386)
T ss_pred             eccceeeecCCeEEEEEecCCCCHHHHH-HHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence            5799999999999999999999999999 999998        467888887766542  23344589999999999999


Q ss_pred             cCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHH
Q 026304           91 LPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FED  122 (240)
Q Consensus        91 ~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~  122 (240)
                      +.+|..|...+                                          +..++.+|++||+|||++      +.+
T Consensus       123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~  202 (386)
T COG4175         123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE  202 (386)
T ss_pred             HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHH
Confidence            99887663211                                          123689999999999988      456


Q ss_pred             HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +.+.|.++.++.++||+++|||++++          .++.|||.+|++ +++.+|+|+++
T Consensus       203 mQdeLl~Lq~~l~KTIvFitHDLdEA----------lriG~rIaimkdG~ivQ~Gtp~eI  252 (386)
T COG4175         203 MQDELLELQAKLKKTIVFITHDLDEA----------LRIGDRIAIMKDGEIVQVGTPEEI  252 (386)
T ss_pred             HHHHHHHHHHHhCCeEEEEecCHHHH----------HhccceEEEecCCeEEEeCCHHHH
Confidence            77777788776789999999999999          999999999999 99999999764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.96  E-value=5.9e-29  Score=202.69  Aligned_cols=149  Identities=23%  Similarity=0.201  Sum_probs=115.2

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++.........+
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLL-RCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG   79 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence            4688999988     8999999999999999999999999999 9999972        334443322110111223358


Q ss_pred             EEEccCceecceecCcchhH--------HHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEec
Q 026304           78 VVTHDGAKLPCWALPELTSF--------RQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGL  143 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~--------~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtH  143 (240)
                      |++|++.+++..++.++..+        ...+...++.+|++++||||++      +..+.++|++++++.+.|+|++||
T Consensus        80 ~~~q~~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH  159 (178)
T cd03229          80 MVFQDFALFPHLTVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH  159 (178)
T ss_pred             EEecCCccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence            99998887777777766532        1123556799999999999988      457889999988733799999999


Q ss_pred             ChhhhhcccchHHHHHhhccceeeecc
Q 026304          144 DGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       144 d~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |++++          ..+||++++|++
T Consensus       160 ~~~~~----------~~~~d~i~~l~~  176 (178)
T cd03229         160 DLDEA----------ARLADRVVVLRD  176 (178)
T ss_pred             CHHHH----------HHhcCEEEEEeC
Confidence            99999          889999999864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.8e-29  Score=210.81  Aligned_cols=158  Identities=13%  Similarity=0.082  Sum_probs=118.9

Q ss_pred             CCceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch
Q 026304            7 KPAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK   69 (240)
Q Consensus         7 ~~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~   69 (240)
                      .++||+++|+++.|         ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...+...
T Consensus         2 ~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          2 NKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLL-HLLGGLDTPTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             CCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCCHHH
Confidence            34689999999876         7899999999999999999999999999 9999972        3444443332211


Q ss_pred             h--cccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhh
Q 026304           70 D--TRYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDA  105 (240)
Q Consensus        70 ~--~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l  105 (240)
                      .  .+....+|++|+..+++.+++.++..+...                   +                       ...+
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al  160 (233)
T PRK11629         81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARAL  160 (233)
T ss_pred             HHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence            1  111235899999887777777766543110                   0                       1115


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      +.+|++||||||++      ...+.++|++++++.|.|||++|||++++          .. +|++++|++ ++...+
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~----------~~-~~~~~~l~~G~i~~~~  227 (233)
T PRK11629        161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA----------KR-MSRQLEMRDGRLTAEL  227 (233)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------Hh-hCEEEEEECCEEEEEe
Confidence            88999999999988      45788999988754589999999999998          65 469999988 766443

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.96  E-value=3.4e-29  Score=220.11  Aligned_cols=157  Identities=14%  Similarity=0.103  Sum_probs=125.4

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +++++|++++|     ++|+||++++||+++|+||||||||||+ ++|+|+.        ++|+++...  ....+ ...
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl-~~l~Gl~~~~~G~i~i~g~~~~~~--~~~~~-~~i   77 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTM-KIITGYLPPDSGSVQVCGEDVLQN--PKEVQ-RNI   77 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccC--hHHHH-hce
Confidence            58999999998     9999999999999999999999999999 9999972        344433221  11112 235


Q ss_pred             eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL  114 (240)
                      +|++|.+.+++.+++.+++.+...+                                          ...++.+|++|+|
T Consensus        78 g~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL  157 (301)
T TIGR03522        78 GYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL  157 (301)
T ss_pred             EEecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            8999998888888887776542211                                          1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      |||++      +..++++++++++  ++|||++||+++++          .++|||+++|++ ++...|+++.+.
T Consensus       158 DEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l~~~----------~~~~d~i~~l~~G~i~~~g~~~~~~  220 (301)
T TIGR03522       158 DEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQEV----------EAICDRVIIINKGKIVADKKLDELS  220 (301)
T ss_pred             cCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHHH
Confidence            99988      4578899988853  69999999999999          999999999999 998889887653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.3e-29  Score=228.56  Aligned_cols=158  Identities=17%  Similarity=0.194  Sum_probs=131.8

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .++.++++|++|+|     |++|||++.+||+++|+|.||||||||+ |+|+|.        .++|+.+...++......
T Consensus         5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLm-KiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~   83 (500)
T COG1129           5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLM-KILSGVYPPDSGEILIDGKPVAFSSPRDALAA   83 (500)
T ss_pred             ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHH-HHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence            34589999999999     9999999999999999999999999999 999996        457777766555544444


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh-----------------------h-----------------------chhhhc
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK-----------------------L-----------------------GDDAYA  107 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~-----------------------~-----------------------~~~l~~  107 (240)
                      + +.+++|+..+.+.+++.+|..+...                       +                       ...+..
T Consensus        84 G-I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~  162 (500)
T COG1129          84 G-IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSF  162 (500)
T ss_pred             C-cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhc
Confidence            4 4899999999999999877643211                       0                       111477


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++++|+|||||+      .+.++++++++++ +|.+||++||.++++          .++||||.+|++ +++...+
T Consensus       163 ~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl~Ei----------~~i~DritVlRDG~~v~~~~  228 (500)
T COG1129         163 DARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRLDEV----------FEIADRITVLRDGRVVGTRP  228 (500)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHH----------HHhcCEEEEEeCCEEeeecc
Confidence            999999999998      3479999999997 899999999999999          999999999999 8777666

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.96  E-value=4.7e-29  Score=212.05  Aligned_cols=160  Identities=19%  Similarity=0.157  Sum_probs=119.6

Q ss_pred             EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc-hhcccCC
Q 026304           11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS-KDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~-~~~~~~~   75 (240)
                      |+++|++++|      ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++. .......
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   79 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLL-RCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ   79 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence            4678888876      8899999999999999999999999999 9999972        334443322210 1111123


Q ss_pred             CeEEEccCceecceecCcchhHH--------------------Hh-------h-----------------------chhh
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR--------------------QK-------L-----------------------GDDA  105 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~--------------------~~-------~-----------------------~~~l  105 (240)
                      .+|++|+..+++.+++.++..+.                    ..       +                       ...+
T Consensus        80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  159 (241)
T cd03256          80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL  159 (241)
T ss_pred             cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence            58999988777766665544321                    00       0                       1125


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++||||||++      ...+.++|++++++.|.|||++|||++++          ..+||++++|++ ++...|++
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~~  229 (241)
T cd03256         160 MQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA----------REYADRIVGLKDGRIVFDGPP  229 (241)
T ss_pred             hcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeecCH
Confidence            88999999999988      45788999998764589999999999999          889999999998 88777776


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +.+
T Consensus       230 ~~~  232 (241)
T cd03256         230 AEL  232 (241)
T ss_pred             HHh
Confidence            543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.96  E-value=5.2e-29  Score=208.27  Aligned_cols=149  Identities=21%  Similarity=0.166  Sum_probs=113.7

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~   74 (240)
                      ||+++|++++|      ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...+... .....
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-KLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR   79 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence            58899999887      8999999999999999999999999999 9999972        2333332221111 01122


Q ss_pred             CCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~ll  112 (240)
                      ..+|++|+..+++..++.++..+...                   +                       ...++.+|++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  159 (214)
T TIGR02673        80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLL  159 (214)
T ss_pred             heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEE
Confidence            35899998877776677665443210                   0                       11258899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +||||++      +..+.++|+++.+ +|.|||++|||++++          ..+||++++|++
T Consensus       160 lLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~----------~~~~d~i~~l~~  212 (214)
T TIGR02673       160 LADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLSLV----------DRVAHRVIILDD  212 (214)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhcCEEEEecC
Confidence            9999988      4578899999876 689999999999999          889999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.96  E-value=6.7e-29  Score=212.35  Aligned_cols=159  Identities=18%  Similarity=0.110  Sum_probs=121.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc------chh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS------SKD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~------~~~   70 (240)
                      ||+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+.      ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLL-RCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR   81 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence            79999999998     8999999999999999999999999999 9999972        23433322110      001


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHH-------------h-------h-----------------------chhhhc
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L-----------------------GDDAYA  107 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-----------------------~~~l~~  107 (240)
                      ......+|++|+..+++..++.++..+..             .       +                       ...++.
T Consensus        82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~  161 (250)
T PRK11264         82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAM  161 (250)
T ss_pred             HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhc
Confidence            11123589999887777666665543210             0       0                       112588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++||||||++      +..+.++|.++.+ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       162 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  230 (250)
T PRK11264        162 RPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFA----------RDVADRAIFMDQGRIVEQGPAKA  230 (250)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeCCHHH
Confidence            999999999988      4578889998876 689999999999999          899999999998 8877777654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=6e-29  Score=201.77  Aligned_cols=145  Identities=18%  Similarity=0.162  Sum_probs=115.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ++++|++++|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|+++...+  .. .....+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~-~~~~i~   76 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLI-KIILGLLKPDSGEIKVLGKDIKKEP--EE-VKRRIG   76 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccch--Hh-hhccEE
Confidence            4688999887     8999999999999999999999999999 9999972        3343332211  11 122358


Q ss_pred             EEEccCceecceecCcchhH------HHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304           78 VVTHDGAKLPCWALPELTSF------RQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~------~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                      |++|+..+++..++.++..+      ...+...++.+|++|+||||++      +..+.++|+++.+ +|.|+|++|||+
T Consensus        77 ~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~  155 (173)
T cd03230          77 YLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL  155 (173)
T ss_pred             EEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH
Confidence            99999888877777766431      1123556799999999999988      4579999999987 589999999999


Q ss_pred             hhhhcccchHHHHHhhccceeeecc
Q 026304          146 DYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       146 ~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +++          ..+||++++|++
T Consensus       156 ~~~----------~~~~d~i~~l~~  170 (173)
T cd03230         156 EEA----------ERLCDRVAILNN  170 (173)
T ss_pred             HHH----------HHhCCEEEEEeC
Confidence            999          889999999975

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-28  Score=212.26  Aligned_cols=159  Identities=15%  Similarity=0.105  Sum_probs=120.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +..............+|++
T Consensus        10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLl-k~l~Gl~~p~~G~-i~~~g~~~~~~~~~i~~v~   87 (257)
T PRK11247         10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLL-RLLAGLETPSAGE-LLAGTAPLAEAREDTRLMF   87 (257)
T ss_pred             CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeE-EEECCEEHHHhhCceEEEe
Confidence            4689999999998     8999999999999999999999999999 9999973  2332 3211111111112358999


Q ss_pred             ccCceecceecCcchhHHH------h-------h-----------------------chhhhccCcEEEEcCccC-----
Q 026304           81 HDGAKLPCWALPELTSFRQ------K-------L-----------------------GDDAYAKLDVIGIDEAQF-----  119 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~~~------~-------~-----------------------~~~l~~~p~lllLDEP~~-----  119 (240)
                      |+..+++..++.+++.+..      .       +                       ...++.+|++||||||++     
T Consensus        88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~  167 (257)
T PRK11247         88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDAL  167 (257)
T ss_pred             cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence            9887777667766543210      0       0                       112589999999999988     


Q ss_pred             -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                       +..+.++|+++.++.+.|||++|||++++          ..+||++++|++ ++...++.
T Consensus       168 ~~~~l~~~L~~~~~~~~~tviivsHd~~~~----------~~~~d~i~~l~~G~i~~~~~~  218 (257)
T PRK11247        168 TRIEMQDLIESLWQQHGFTVLLVTHDVSEA----------VAMADRVLLIEEGKIGLDLTV  218 (257)
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeeccc
Confidence             45788889888654689999999999999          899999999998 77766553

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4.3e-29  Score=218.08  Aligned_cols=161  Identities=14%  Similarity=0.112  Sum_probs=119.8

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~   71 (240)
                      +|+++||++.|          +++|||+|++||+++|+||||||||||+ ++|+|+.        ++|.++...+.....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLI-QHLNGLLKPTSGKIIIDGVDITDKKVKLSD   80 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCccEEEECCEECCCcCccHHH
Confidence            48999999987          6799999999999999999999999999 9999972        344444322111111


Q ss_pred             ccCCCeEEEccCc-eecceecCcchhHHH-------------------h--h-----------------------chhhh
Q 026304           72 RYAIDSVVTHDGA-KLPCWALPELTSFRQ-------------------K--L-----------------------GDDAY  106 (240)
Q Consensus        72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~~-------------------~--~-----------------------~~~l~  106 (240)
                      .....+|++|++. .+...++.+++.+..                   .  +                       +..++
T Consensus        81 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~  160 (287)
T PRK13637         81 IRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA  160 (287)
T ss_pred             HhhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence            1234589999752 222235544433210                   0  0                       11258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++||||||++      +..++++|++++++.|.|||++|||++++          ..+||||++|++ ++...|+++
T Consensus       161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~drv~~l~~G~i~~~g~~~  230 (287)
T PRK13637        161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDV----------AKLADRIIVMNKGKCELQGTPR  230 (287)
T ss_pred             cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHH
Confidence            9999999999988      45799999999764589999999999999          899999999999 888888876


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      .+
T Consensus       231 ~~  232 (287)
T PRK13637        231 EV  232 (287)
T ss_pred             HH
Confidence            53

>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2

Probab=99.96  E-value=1.1e-28  Score=200.66  Aligned_cols=173  Identities=43%  Similarity=0.763  Sum_probs=139.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecce--ecCcchhHHHhhchhhhcc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW--ALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~--~~~~~~~~~~~~~~~l~~~  108 (240)
                      |++..++|||+|||||.|++.+..+...|+++..++|..+.|+....++++++...+..  .......+.    ..+..+
T Consensus         1 g~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D~R~~~~~I~s~~g~~~~~~~~~~~~~~~~~----~~~~~~   76 (176)
T PF00265_consen    1 GKLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAIDTRYGEDKIVSHDGISLEAIVDPIDNLFEII----DILEND   76 (176)
T ss_dssp             -EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTSCCCCSSEEEHTTSCEEEEESSEESSGGGGG----GGCCTT
T ss_pred             CEEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEecccCcCCCCeEEecCCCcccccccchhhHHHHH----HHhccC
Confidence            78999999999999999989888888999999999998888887656888887776665  222222221    222345


Q ss_pred             CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304          109 LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE  187 (240)
Q Consensus       109 p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~  187 (240)
                      ++++++||.+|+. ++.+++..+.+ .|+.|++.+.|.++.+++|+++.+|..+||+|..|+..|..||.++.++.|+..
T Consensus        77 ~dvI~IDEaQFf~~~i~~l~~~~~~-~g~~Vi~~GL~~df~~~~F~~~~~Ll~~Ad~i~kl~avC~~Cg~~A~~t~R~~~  155 (176)
T PF00265_consen   77 YDVIGIDEAQFFDEQIVQLVEILAN-KGIPVICAGLDTDFRGEPFGGSPRLLPLADKITKLKAVCEVCGRKATFTQRIVD  155 (176)
T ss_dssp             CSEEEESSGGGSTTTHHHHHHHHHH-TT-EEEEEEESB-TTSSB-TTHHHHHHH-SEEEEE-EE-TTTSSEE-EEEEEET
T ss_pred             CCEEEEechHhhHHHHHHHHHHHHh-CCCeEEEEeeCCccccCcchhHHHHHhhCCeEEEeccEECCCCCceeEEEEEcC
Confidence            9999999999987 78888888776 799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEeCCcceEEeecchhh
Q 026304          188 ETETEIIGGADVYMPVCRQHY  208 (240)
Q Consensus       188 ~~~~~~~g~~~~y~~~c~~~~  208 (240)
                      .++++.+||++.|+++|++||
T Consensus       156 ~~~~i~iGg~e~Y~~~Cr~cy  176 (176)
T PF00265_consen  156 DGEQILIGGSEKYEPVCRKCY  176 (176)
T ss_dssp             TSSSS-TTSTTTEEEE-CTTH
T ss_pred             CCCEEEECCCCeEEEechhhC
Confidence            999999999999999999998

7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.96  E-value=9.1e-29  Score=207.36  Aligned_cols=151  Identities=20%  Similarity=0.142  Sum_probs=116.9

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcc
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~   72 (240)
                      ||+++|++++|         ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++... + ...+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~-~-~~~~   77 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTL-RMLAGLLEPDAGFATVDGFDVVKE-P-AEAR   77 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCceEEECCEEcccC-H-HHHH
Confidence            57889999876         7899999999999999999999999999 9999982        234433211 1 1112


Q ss_pred             cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD  110 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~  110 (240)
                       ...+|++|+..+++.+++.++..+....                                          ...++.+|+
T Consensus        78 -~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  156 (218)
T cd03266          78 -RRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPP  156 (218)
T ss_pred             -hhEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence             2358999998888777777665432110                                          112589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      +|+||||++      +..+.++|+++.+ +|.|||++|||++++          ..+||++++|++ ++...
T Consensus       157 illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~~~----------~~~~d~i~~l~~G~i~~~  217 (218)
T cd03266         157 VLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQEV----------ERLCDRVVVLHRGRVVYE  217 (218)
T ss_pred             EEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEeec
Confidence            999999988      4578899999876 689999999999999          899999999988 76543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=6.5e-29  Score=215.19  Aligned_cols=160  Identities=13%  Similarity=0.065  Sum_probs=117.3

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++..............
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i   79 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLF-MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV   79 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence            68999999998     8999999999999999999999999999 9999972        34444321111111111235


Q ss_pred             eEEEccCce-ecceecCcchhHH-------------------Hhh-----------------------chhhhccCcEEE
Q 026304           77 SVVTHDGAK-LPCWALPELTSFR-------------------QKL-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        77 ~~v~q~~~~-~~~~~~~~~~~~~-------------------~~~-----------------------~~~l~~~p~lll  113 (240)
                      +|++|+... +...++.++..+.                   ..+                       +..++.+|++||
T Consensus        80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lll  159 (271)
T PRK13638         80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLL  159 (271)
T ss_pred             EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            899987542 1222232222110                   000                       112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +..+.++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       160 LDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  223 (271)
T PRK13638        160 LDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDIDLI----------YEISDAVYVLRQGQILTHGAPGEV  223 (271)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            999988      4578899999876 589999999999999          899999999999 88888887653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.8e-29  Score=217.38  Aligned_cols=159  Identities=16%  Similarity=0.082  Sum_probs=120.8

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeecc--ch
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKS--SK   69 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~--~~   69 (240)
                      ||+++|++++|          ++|+||+|++||+++|+||||||||||+ ++|+|+        .++|.++.....  ..
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   79 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLL-QHLNGLLQPTEGKVTVGDIVVSSTSKQKEI   79 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEECccccccccH
Confidence            68999999987          7899999999999999999999999999 999997        234544421110  01


Q ss_pred             hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304           70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD  104 (240)
Q Consensus        70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~  104 (240)
                      .......+|++|++  .++. .++.+++.+...                   +                        +..
T Consensus        80 ~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~a  158 (288)
T PRK13643         80 KPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGI  158 (288)
T ss_pred             HHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHH
Confidence            11122358999975  4444 355544433110                   0                        112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++||||||++      +..+.++|+++++ .|.|||++|||++++          ..+||||++|++ ++...|+
T Consensus       159 L~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~~~----------~~~~dri~~l~~G~i~~~g~  227 (288)
T PRK13643        159 LAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDV----------ADYADYVYLLEKGHIISCGT  227 (288)
T ss_pred             HHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECC
Confidence            589999999999988      4578899998876 699999999999999          899999999999 9988898


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      ++.+
T Consensus       228 ~~~~  231 (288)
T PRK13643        228 PSDV  231 (288)
T ss_pred             HHHH
Confidence            8764

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=1.4e-28  Score=197.86  Aligned_cols=141  Identities=18%  Similarity=0.191  Sum_probs=108.6

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|+++...++.. .+....+
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~~-~~~~~i~   78 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLM-KILSGLYKPDSGEILVDGKEVSFASPRD-ARRAGIA   78 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCcCCHHH-HHhcCeE
Confidence            4788999998     8999999999999999999999999999 9999972        2333332221111 1122347


Q ss_pred             EEEccCceecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRS  151 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~  151 (240)
                      |++|         +.........+...++.+|++|+||||++      +..+.++|+++.+ ++.|||++|||++++   
T Consensus        79 ~~~q---------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~---  145 (163)
T cd03216          79 MVYQ---------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEV---  145 (163)
T ss_pred             EEEe---------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH---
Confidence            8877         23223333345667899999999999987      4578899999876 589999999999998   


Q ss_pred             cchHHHHHhhccceeeecc-eee
Q 026304          152 FGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       152 f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                             ..+||++++|++ ++.
T Consensus       146 -------~~~~d~~~~l~~g~i~  161 (163)
T cd03216         146 -------FEIADRVTVLRDGRVV  161 (163)
T ss_pred             -------HHhCCEEEEEECCEEE
Confidence                   899999999987 654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.1e-29  Score=216.26  Aligned_cols=159  Identities=22%  Similarity=0.183  Sum_probs=120.8

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      ++|+++|+++.|      ++|+||+|++||+++|+||||||||||+ ++|+|+.        ++|+++...+.  .....
T Consensus         3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~   79 (274)
T PRK13647          3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLL-LHLNGIYLPQRGRVKVMGREVNAENE--KWVRS   79 (274)
T ss_pred             ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEECCCCCH--HHHHh
Confidence            379999999988      8999999999999999999999999999 9999972        33443321111  11122


Q ss_pred             CCeEEEccCc-eecceecCcchhHHHh------------------------------------------hchhhhccCcE
Q 026304           75 IDSVVTHDGA-KLPCWALPELTSFRQK------------------------------------------LGDDAYAKLDV  111 (240)
Q Consensus        75 ~~~~v~q~~~-~~~~~~~~~~~~~~~~------------------------------------------~~~~l~~~p~l  111 (240)
                      ..+|++|++. .+...++.++..+...                                          ++..++.+|++
T Consensus        80 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l  159 (274)
T PRK13647         80 KVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV  159 (274)
T ss_pred             hEEEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            3589999852 2333455554433110                                          01225899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |+||||++      +.+++++|+++++ .|.|||++|||++++          .++|||+++|++ ++...|+++.+
T Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  225 (274)
T PRK13647        160 IVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLA----------AEWADQVIVLKEGRVLAEGDKSLL  225 (274)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHh
Confidence            99999988      4578999999986 599999999999999          899999999999 88888887644

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.6e-29  Score=225.77  Aligned_cols=150  Identities=21%  Similarity=0.206  Sum_probs=117.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh--cccCCCeEEEccCceeccee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD--TRYAIDSVVTHDGAKLPCWA   90 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~--~~~~~~~~v~q~~~~~~~~~   90 (240)
                      ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|.++...++...  .+....+|++|+..+++.++
T Consensus        44 L~~isl~i~~Gei~~LvG~NGsGKSTLL-r~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T  122 (400)
T PRK10070         44 VKDASLAIEEGEIFVIMGLSGSGKSTMV-RLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT  122 (400)
T ss_pred             EEeEEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence            6899999999999999999999999999 9999972        34444433322111  11223589999998888888


Q ss_pred             cCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHH
Q 026304           91 LPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FED  122 (240)
Q Consensus        91 ~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~  122 (240)
                      +.+++.+....                                          ...++.+|++||||||++      +..
T Consensus       123 v~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~  202 (400)
T PRK10070        123 VLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTE  202 (400)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHH
Confidence            87776542110                                          112589999999999988      457


Q ss_pred             HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +.+.|.++.++.|+|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       203 l~~~L~~l~~~~g~TIIivTHd~~~~----------~~~~Dri~vL~~G~i~~~g~~~~l  252 (400)
T PRK10070        203 MQDELVKLQAKHQRTIVFISHDLDEA----------MRIGDRIAIMQNGEVVQVGTPDEI  252 (400)
T ss_pred             HHHHHHHHHHHCCCeEEEEECCHHHH----------HHhCCEEEEEECCEEEecCCHHHH
Confidence            88899988764689999999999999          899999999999 88888877654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.96  E-value=1.1e-28  Score=212.00  Aligned_cols=163  Identities=17%  Similarity=0.152  Sum_probs=124.2

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeec-------
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIK-------   66 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~-------   66 (240)
                      +..+|+++|+++.|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++....       
T Consensus         2 ~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (257)
T PRK10619          2 SENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGSIVVNGQTINLVRDKDGQLK   80 (257)
T ss_pred             CCccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence            34579999999998     8999999999999999999999999999 9999972        3344332110       


Q ss_pred             ---c-chhcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------
Q 026304           67 ---S-SKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------  101 (240)
Q Consensus        67 ---~-~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------  101 (240)
                         . .........+|++|++.+++.+++.++..+..             .       +                     
T Consensus        81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr  160 (257)
T PRK10619         81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR  160 (257)
T ss_pred             cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence               0 00111123589999988877777766653210             0       0                     


Q ss_pred             ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                         +..++.+|++|+||||++      +..+.++|+++++ .|.|||++|||++++          ..+|||+++|++ +
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~~~----------~~~~d~i~~l~~G~  229 (257)
T PRK10619        161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFA----------RHVSSHVIFLHQGK  229 (257)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcCEEEEEECCE
Confidence               112588999999999988      4578899999876 699999999999999          889999999999 8


Q ss_pred             eeccCCccee
Q 026304          172 CELCGKRAFF  181 (240)
Q Consensus       172 ~~~~g~~~~~  181 (240)
                      ++..|+++.+
T Consensus       230 i~~~~~~~~~  239 (257)
T PRK10619        230 IEEEGAPEQL  239 (257)
T ss_pred             EEEeCCHHHh
Confidence            8877776543

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.96  E-value=9.3e-29  Score=210.51  Aligned_cols=159  Identities=19%  Similarity=0.132  Sum_probs=121.2

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++|+++.|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+.... +...
T Consensus         1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~~-~~~~   78 (242)
T TIGR03411         1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMM-DVITGKTRPDEGSVLFGGTDLTGLPEHQI-ARAG   78 (242)
T ss_pred             CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCeecCCCCHHHH-HhcC
Confidence            378999999998     8999999999999999999999999999 9999972        23333322211111 1123


Q ss_pred             CeEEEccCceecceecCcchhHHH--------------------h-------h-----------------------chhh
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ--------------------K-------L-----------------------GDDA  105 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~--------------------~-------~-----------------------~~~l  105 (240)
                      .+|++|+..+++.+++.++..+..                    .       +                       ...+
T Consensus        79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral  158 (242)
T TIGR03411        79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLL  158 (242)
T ss_pred             eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence            589999888887777665543310                    0       0                       1125


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|+||||++      +..++++|+++.+  +.|||++||+++++          ..+||++++|++ ++...|++
T Consensus       159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~----------~~~~d~i~~l~~g~~~~~~~~  226 (242)
T TIGR03411       159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDMEFV----------RSIADKVTVLHQGSVLAEGSL  226 (242)
T ss_pred             hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHHHH----------HHhCCEEEEEECCeEEeeCCH
Confidence            88999999999988      4578899988864  68999999999999          899999999998 88777766


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +.+
T Consensus       227 ~~~  229 (242)
T TIGR03411       227 DQV  229 (242)
T ss_pred             HHH
Confidence            543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.7e-29  Score=219.73  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             CceEEEcceeEee---------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEe
Q 026304            8 PAAVTTNQVNSGR---------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAM   64 (240)
Q Consensus         8 ~~~l~~~~ls~~~---------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~   64 (240)
                      .++|+++||++.|               ++||||+|++||+++|+|+||||||||+ ++|+|+        .++|+++..
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl-~~l~gl~~p~~G~i~~~g~~l~~   81 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLA-RLLTMIETPTGGELYYQGQDLLK   81 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHHcCCCCCCcEEEECCEEcCc
Confidence            4589999999876               6799999999999999999999999999 999997        245555543


Q ss_pred             eccch-hcccCCCeEEEccC--ceecceecCcchhH--------------------HHhh--------------------
Q 026304           65 IKSSK-DTRYAIDSVVTHDG--AKLPCWALPELTSF--------------------RQKL--------------------  101 (240)
Q Consensus        65 ~~~~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~--------------------~~~~--------------------  101 (240)
                      .+... ....+..+|++|++  .+.+.+++.+++..                    ...+                    
T Consensus        82 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~Q  161 (327)
T PRK11308         82 ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQ  161 (327)
T ss_pred             CCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHH
Confidence            32211 11123468999986  35554444332211                    0000                    


Q ss_pred             ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304          102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-  170 (240)
Q Consensus       102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-  170 (240)
                          +..++.+|++||+||||+      +.+++++|+++.++.|.|||++|||++.+          ..+||+|++|++ 
T Consensus       162 Rv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~----------~~~adrv~vm~~G  231 (327)
T PRK11308        162 RIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVV----------EHIADEVMVMYLG  231 (327)
T ss_pred             HHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence                112589999999999988      45899999999875699999999999999          889999999999 


Q ss_pred             eeeccCCcce
Q 026304          171 RCELCGKRAF  180 (240)
Q Consensus       171 ~~~~~g~~~~  180 (240)
                      +++..|+++.
T Consensus       232 ~ive~g~~~~  241 (327)
T PRK11308        232 RCVEKGTKEQ  241 (327)
T ss_pred             EEEEECCHHH
Confidence            9988887654

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.96  E-value=8.5e-29  Score=220.10  Aligned_cols=162  Identities=14%  Similarity=0.053  Sum_probs=124.5

Q ss_pred             CceEEEcceeEee------------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCce
Q 026304            8 PAAVTTNQVNSGR------------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRN   61 (240)
Q Consensus         8 ~~~l~~~~ls~~~------------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~   61 (240)
                      .++|+++||+++|                  ++|+||+|.+||+++|+|+||||||||+ ++|+|+        .++|++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLl-k~i~Gl~~p~~G~I~~~G~~   84 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFA-RAIIGLVKATDGEVAWLGKD   84 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHCCCCCCCcEEEECCEE
Confidence            4689999999876                  4799999999999999999999999999 999997        345555


Q ss_pred             EEeeccch-hcccCCCeEEEccC--ceecceecCcchhHHH---------------------hh----------------
Q 026304           62 IAMIKSSK-DTRYAIDSVVTHDG--AKLPCWALPELTSFRQ---------------------KL----------------  101 (240)
Q Consensus        62 i~~~~~~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~---------------------~~----------------  101 (240)
                      +...+... ....+..+|++|++  .+++.+++.+++.+..                     .+                
T Consensus        85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg  164 (331)
T PRK15079         85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG  164 (331)
T ss_pred             CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence            54332211 11123468999986  4666666655532110                     00                


Q ss_pred             --------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceee
Q 026304          102 --------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTK  167 (240)
Q Consensus       102 --------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~  167 (240)
                              +..++.+|++||+||||+      +.+++++|+++.++.|.|+|++|||++.+          ..+||||++
T Consensus       165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~----------~~~~dri~v  234 (331)
T PRK15079        165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVV----------KHISDRVLV  234 (331)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhCCEEEE
Confidence                    112589999999999988      45799999999875699999999999999          899999999


Q ss_pred             ecc-eeeccCCcce
Q 026304          168 LTA-RCELCGKRAF  180 (240)
Q Consensus       168 l~~-~~~~~g~~~~  180 (240)
                      |++ +++..|+++.
T Consensus       235 l~~G~ive~g~~~~  248 (331)
T PRK15079        235 MYLGHAVELGTYDE  248 (331)
T ss_pred             EECCEEEEEcCHHH
Confidence            999 8888887654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=2.4e-28  Score=210.01  Aligned_cols=156  Identities=20%  Similarity=0.164  Sum_probs=115.7

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      ||+++|+++.|     ++|+||+|++|++++|+||||||||||+ ++|+|+.  ..|. +..............+|++|+
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~   78 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL-NLIAGFVPYQHGS-ITLDGKPVEGPGAERGVVFQN   78 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcE-EEECCEECCCCCCcEEEEeCC
Confidence            58999999998     8999999999999999999999999999 9999973  2232 221110000011124899998


Q ss_pred             CceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEcCccC-
Q 026304           83 GAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDEAQF-  119 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDEP~~-  119 (240)
                      ..+++..++.++..+...                   +                       ...++.+|++||||||++ 
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~  158 (255)
T PRK11248         79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA  158 (255)
T ss_pred             CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            877776666655433110                   0                       112588999999999988 


Q ss_pred             -----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--c-eeeccCC
Q 026304          120 -----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--A-RCELCGK  177 (240)
Q Consensus       120 -----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--~-~~~~~g~  177 (240)
                           +..+.++|++++++.|.|||++|||++++          ..+||++++|+  + ++...++
T Consensus       159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~----------~~~~d~i~~l~~~~G~i~~~~~  214 (255)
T PRK11248        159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIEEA----------VFMATELVLLSPGPGRVVERLP  214 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCCcEEEEEec
Confidence                 45788899888653589999999999999          89999999997  3 6654443

>PRK10908 cell division protein FtsE; Provisional

Probab=99.96  E-value=1.5e-28  Score=206.82  Aligned_cols=151  Identities=19%  Similarity=0.113  Sum_probs=114.6

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-cccC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-TRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-~~~~   74 (240)
                      ||+++|+++.|      ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+.... ....
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~   79 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLL-KLICGIERPSAGKIWFSGHDITRLKNREVPFLRR   79 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence            58899999987      8999999999999999999999999999 9999972        23443332221110 1112


Q ss_pred             CCeEEEccCceecceecCcchhHHH-------------------hh-----------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ-------------------KL-----------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~-------------------~~-----------------------~~~l~~~p~ll  112 (240)
                      ..+|++|++.+++..++.++..+..                   .+                       ...++.+|++|
T Consensus        80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  159 (222)
T PRK10908         80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVL  159 (222)
T ss_pred             heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence            3589999887766666655543311                   00                       11258899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                      +||||++      +..+.++|+++.+ .+.|||++|||++++          ..+||++++|++ ++
T Consensus       160 llDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i  215 (222)
T PRK10908        160 LADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLI----------SRRSYRMLTLSDGHL  215 (222)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEE
Confidence            9999988      4578899998876 589999999999999          899999999988 54

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.96  E-value=1.4e-28  Score=205.38  Aligned_cols=148  Identities=20%  Similarity=0.190  Sum_probs=111.7

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ++++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++..............+
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   79 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLL-RCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG   79 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence            4688999988     8999999999999999999999999999 9999972        233332110000011122358


Q ss_pred             EEEccCceecceecCcchhHHH--------------------hh-----------------------chhhhccCcEEEE
Q 026304           78 VVTHDGAKLPCWALPELTSFRQ--------------------KL-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~--------------------~~-----------------------~~~l~~~p~lllL  114 (240)
                      |++|+..+++..++.++..+..                    .+                       ...++.+|++|||
T Consensus        80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  159 (213)
T cd03262          80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF  159 (213)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999887777666665543210                    00                       1125889999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |||++      +..+.++|+++++ .|.|||++|||++++          ..+||++++|++
T Consensus       160 DEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~~~----------~~~~d~i~~l~~  210 (213)
T cd03262         160 DEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFA----------REVADRVIFMDD  210 (213)
T ss_pred             eCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence            99987      4578899999886 689999999999999          899999999976

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.7e-29  Score=215.34  Aligned_cols=161  Identities=17%  Similarity=0.103  Sum_probs=122.4

Q ss_pred             CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304            7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT   71 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~   71 (240)
                      ..++|+++|+++.|       ++++||+|.+||+++|+||||||||||+ ++|+|+        .++|+++...+.. ..
T Consensus         2 ~~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl-~~i~G~~~p~~G~i~~~g~~i~~~~~~-~~   79 (279)
T PRK13635          2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLA-KLLNGLLLPEAGTITVGGMVLSEETVW-DV   79 (279)
T ss_pred             CCceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHH-HH
Confidence            34589999999988       7899999999999999999999999999 999997        2445544322211 11


Q ss_pred             ccCCCeEEEccCc-eecceecCcchhHHHh------------h------------------------------chhhhcc
Q 026304           72 RYAIDSVVTHDGA-KLPCWALPELTSFRQK------------L------------------------------GDDAYAK  108 (240)
Q Consensus        72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~~~------------~------------------------------~~~l~~~  108 (240)
                      + ...+|++|+.. .+...++.+++.+...            .                              ...++.+
T Consensus        80 ~-~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  158 (279)
T PRK13635         80 R-RQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQ  158 (279)
T ss_pred             h-hheEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            2 23589999863 4444566555433100            0                              1125899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++||||||++      +..++++|++++++.|.|||++|||++.+          . .||++++|++ ++...|+++.+
T Consensus       159 p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~~~  227 (279)
T PRK13635        159 PDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEA----------A-QADRVIVMNKGEILEEGTPEEI  227 (279)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECCHHHH
Confidence            99999999988      45789999999874589999999999998          6 5999999999 88888876643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.6e-28  Score=212.03  Aligned_cols=164  Identities=13%  Similarity=0.057  Sum_probs=122.4

Q ss_pred             CCCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304            5 NLKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT   71 (240)
Q Consensus         5 ~~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~   71 (240)
                      +.++.+|+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+..  .
T Consensus         6 ~~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~   82 (265)
T PRK10575          6 NHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEILLDAQPLESWSSK--A   82 (265)
T ss_pred             CCCCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEehhhCCHH--H
Confidence            4456789999999998     9999999999999999999999999999 9999972        233333221111  1


Q ss_pred             ccCCCeEEEccCceecceecCcchhHH-----------------------Hhh-----------------------chhh
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-----------------------GDDA  105 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-----------------------~~~l  105 (240)
                      .....+|++|+..+++.+++.++..+.                       ..+                       ...+
T Consensus        83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral  162 (265)
T PRK10575         83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV  162 (265)
T ss_pred             HhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence            122358899886655555554333210                       000                       1125


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++||||||++      ...+.++|.+++++.|.|||++||+++++          ..+||++++|++ ++...|++
T Consensus       163 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i----------~~~~d~i~~l~~G~i~~~~~~  232 (265)
T PRK10575        163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMA----------ARYCDYLVALRGGEMIAQGTP  232 (265)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEecCH
Confidence            89999999999988      45788999998764589999999999999          899999999998 88777766


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +++
T Consensus       233 ~~~  235 (265)
T PRK10575        233 AEL  235 (265)
T ss_pred             HHh
Confidence            543

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.96  E-value=2.3e-28  Score=205.41  Aligned_cols=154  Identities=22%  Similarity=0.157  Sum_probs=112.9

Q ss_pred             EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEE
Q 026304           11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus        11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      |+++|+++.|         ++++||+|++|++++|+||||||||||+ ++|+|+. ...-.+..............+|++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~   79 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLL-RIIAGLERPTSGEVLVDGEPVTGPGPDRGYVF   79 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccccCcEEEEe
Confidence            4577887765         6799999999999999999999999999 9999973 222222211111101112358999


Q ss_pred             ccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEcCcc
Q 026304           81 HDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDEP~  118 (240)
                      |...+++..++.++..+...                   +                       ...++.+|++||||||+
T Consensus        80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt  159 (220)
T cd03293          80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPF  159 (220)
T ss_pred             cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCC
Confidence            98877776777665543210                   0                       11258899999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--c-eeecc
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--A-RCELC  175 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--~-~~~~~  175 (240)
                      +      +..++++|+++.++.|.|||++|||++++          ..+||++++|+  + ++...
T Consensus       160 ~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~~~G~i~~~  215 (220)
T cd03293         160 SALDALTREQLQEELLDIWRETGKTVLLVTHDIDEA----------VFLADRVVVLSARPGRIVAE  215 (220)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH----------HHhCCEEEEEECCCCEEEEE
Confidence            8      45788999988654589999999999999          89999999998  5 66543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.1e-28  Score=219.08  Aligned_cols=160  Identities=15%  Similarity=0.117  Sum_probs=119.9

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------------CCceEEeeccc
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------------NGRNIAMIKSS   68 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------------~g~~i~~~~~~   68 (240)
                      +|+++||++.|         ++||||+|++||+++|+|+||||||||+ ++|+|+..            +|+++..++..
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~-~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~   81 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSS-LAIMGLIDYPGRVMAEKLEFNGQDLQRISEK   81 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCCcceEEEECCEECCcCCHH
Confidence            68999999987         8899999999999999999999999999 99999732            23333322221


Q ss_pred             hhc--ccCCCeEEEccCc--eecceecCcchhH--------------------HHhh-----------------------
Q 026304           69 KDT--RYAIDSVVTHDGA--KLPCWALPELTSF--------------------RQKL-----------------------  101 (240)
Q Consensus        69 ~~~--~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~~~~-----------------------  101 (240)
                      ...  +....+|++|++.  +.+.+++.++...                    ...+                       
T Consensus        82 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QR  161 (326)
T PRK11022         82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR  161 (326)
T ss_pred             HHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHH
Confidence            111  2224589999863  4544444321100                    0000                       


Q ss_pred             ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                         ...++.+|++||+||||+      +.+++++|+++.++.|.|+|++|||++.+          ..+||||++|++ +
T Consensus       162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~----------~~~adri~vm~~G~  231 (326)
T PRK11022        162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALV----------AEAAHKIIVMYAGQ  231 (326)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCE
Confidence               112588999999999988      45799999999875699999999999999          899999999999 9


Q ss_pred             eeccCCcce
Q 026304          172 CELCGKRAF  180 (240)
Q Consensus       172 ~~~~g~~~~  180 (240)
                      ++..|+++.
T Consensus       232 ive~g~~~~  240 (326)
T PRK11022        232 VVETGKAHD  240 (326)
T ss_pred             EEEECCHHH
Confidence            988887654

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.96  E-value=9.8e-29  Score=207.17  Aligned_cols=148  Identities=19%  Similarity=0.165  Sum_probs=110.2

Q ss_pred             EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch--hc
Q 026304           11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK--DT   71 (240)
Q Consensus        11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~--~~   71 (240)
                      |+++|++++|         ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++..  ..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~   79 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRPTSGEVRVDGTDISKLSEKELAAF   79 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHH-HHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence            4677887765         7899999999999999999999999999 9999972        2333332222111  11


Q ss_pred             ccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL  109 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p  109 (240)
                      +....+|++|+..+++.+++.++..+...                   +                       ...++.+|
T Consensus        80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  159 (218)
T cd03255          80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP  159 (218)
T ss_pred             HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence            12235899998887777677655443110                   0                       11258899


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++||||||++      +..+.++|++++++.|+|||++|||++++          . +||++++|++
T Consensus       160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~-~~d~v~~l~~  215 (218)
T cd03255         160 KIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA----------E-YADRIIELRD  215 (218)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHH----------h-hhcEEEEeeC
Confidence            9999999988      45788999998764589999999999998          6 9999999976

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=9.8e-29  Score=231.48  Aligned_cols=161  Identities=20%  Similarity=0.194  Sum_probs=124.4

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...++.. .+..
T Consensus         9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~-~~~~   86 (510)
T PRK15439          9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLM-KIIAGIVPPDSGTLEIGGNPCARLTPAK-AHQL   86 (510)
T ss_pred             CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHH-HHhC
Confidence            4589999999998     8999999999999999999999999999 9999973        2333322111111 1112


Q ss_pred             CCeEEEccCceecceecCcchhHH--------Hh------------------------------hchhhhccCcEEEEcC
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR--------QK------------------------------LGDDAYAKLDVIGIDE  116 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~--------~~------------------------------~~~~l~~~p~lllLDE  116 (240)
                      ..+|++|+..+++.+++.+++.+.        .+                              +...++.+|++|||||
T Consensus        87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDE  166 (510)
T PRK15439         87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDE  166 (510)
T ss_pred             CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            358999998777777776554321        00                              0122689999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++      +..+.++|+++++ +|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       167 Pt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  227 (510)
T PRK15439        167 PTASLTPAETERLFSRIRELLA-QGVGIVFISHKLPEI----------RQLADRISVMRDGTIALSGKTADL  227 (510)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEecChHHc
Confidence            988      4578999999876 699999999999999          899999999999 88878876543

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.96  E-value=1.4e-28  Score=208.79  Aligned_cols=157  Identities=16%  Similarity=0.084  Sum_probs=118.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++++||+|.+|++++|+||||||||||+ ++|+|+.        ++|.++...+.  ..+ ...
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~i~~~~~--~~~-~~i   76 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLF-SLLTRLYVAQEGQISVAGHDLRRAPR--AAL-ARL   76 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcccCCh--hhh-hhE
Confidence            57899999988     8999999999999999999999999999 9999972        23333322111  111 235


Q ss_pred             eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL  114 (240)
                      +|++|+..+++..++.++..+...                   +                       +..++.+|++|+|
T Consensus        77 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llll  156 (236)
T TIGR03864        77 GVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLL  156 (236)
T ss_pred             EEeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            899998776666666555432110                   0                       1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +..+.+.|++++++.|.|||++|||++++          .. ||++++|++ ++...|+++.+
T Consensus       157 DEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~-~d~i~~l~~G~i~~~~~~~~~  219 (236)
T TIGR03864       157 DEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEI----------EA-DDRLVVLHRGRVLADGAAAEL  219 (236)
T ss_pred             cCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhH----------hh-CCEEEEEeCCeEEEeCCHHHH
Confidence            99988      45788999998754589999999999998          64 999999998 87777766543

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.96  E-value=2.3e-28  Score=206.05  Aligned_cols=154  Identities=15%  Similarity=0.089  Sum_probs=111.8

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc-hhc
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS-KDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~-~~~   71 (240)
                      +|+++|++++|         ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++. ...
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLA-RAILGLLKPTSGSIIFDGKDLLKLSRRLRKI   79 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEccccchhhHHH
Confidence            57889998876         6799999999999999999999999999 9999972        334443322210 011


Q ss_pred             ccCCCeEEEccC--ceecceecCcchhHH---------------------Hhh------------------------chh
Q 026304           72 RYAIDSVVTHDG--AKLPCWALPELTSFR---------------------QKL------------------------GDD  104 (240)
Q Consensus        72 ~~~~~~~v~q~~--~~~~~~~~~~~~~~~---------------------~~~------------------------~~~  104 (240)
                      .....+|++|+.  .+++.+++.++..+.                     ..+                        ...
T Consensus        80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara  159 (228)
T cd03257          80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARA  159 (228)
T ss_pred             hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHH
Confidence            122358899886  344444443332110                     000                        112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ++.+|++||||||++      +..+.+.|++++++.|.|||++|||++.+          ..+||++++|++ ++..
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~  226 (228)
T cd03257         160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVV----------AKIADRVAVMYAGKIVE  226 (228)
T ss_pred             HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCeEEEEeCCEEEe
Confidence            588999999999988      45788999998763489999999999999          889999999998 6653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=210.23  Aligned_cols=157  Identities=17%  Similarity=0.102  Sum_probs=118.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++. ..+ ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~-~~i   79 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLI-KLINRLIDPTEGSILIDGVDIKTIDVI-DLR-RKI   79 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcChH-Hhh-hcE
Confidence            68999999998     8999999999999999999999999999 9999972        234333222111 112 235


Q ss_pred             eEEEccCceecceecCcchhHH---------------Hhh------------------------chhhhccCcEEEEcCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFR---------------QKL------------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~---------------~~~------------------------~~~l~~~p~lllLDEP  117 (240)
                      +|++|+..+++ .++.++..+.               ..+                        ...++.+|++||||||
T Consensus        80 ~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  158 (241)
T PRK14250         80 GMVFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP  158 (241)
T ss_pred             EEEecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            88999876654 3444332210               000                        1125889999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ++      +..+.+.|++++++.|.|||++|||++++          ..+||++++|++ ++...|++.+
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  218 (241)
T PRK14250        159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQA----------KRIGDYTAFLNKGILVEYAKTYD  218 (241)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH----------HHhCCEEEEEeCCEEEEeCCHHH
Confidence            87      45788889888764589999999999999          899999999999 8877776654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.1e-28  Score=222.53  Aligned_cols=150  Identities=19%  Similarity=0.175  Sum_probs=118.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCc----eEEeeccch--hcccCCCeEEEccCcee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGR----NIAMIKSSK--DTRYAIDSVVTHDGAKL   86 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~----~i~~~~~~~--~~~~~~~~~v~q~~~~~   86 (240)
                      ++|+||+|++||+++|+||||||||||+ ++|+|+.        ++|+    ++...+...  ..|....+|+||+..++
T Consensus        40 l~~vsf~i~~Gei~~I~G~nGsGKSTLl-r~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~  118 (382)
T TIGR03415        40 VANASLDIEEGEICVLMGLSGSGKSSLL-RAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALM  118 (382)
T ss_pred             EEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCC
Confidence            7899999999999999999999999999 9999972        3332    222221111  11223468999999999


Q ss_pred             cceecCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC-----
Q 026304           87 PCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF-----  119 (240)
Q Consensus        87 ~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~-----  119 (240)
                      +.+++.+|..+...+                                          +..++.+|++||||||++     
T Consensus       119 p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~  198 (382)
T TIGR03415       119 PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPL  198 (382)
T ss_pred             CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence            988888777643210                                          112589999999999988     


Q ss_pred             -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                       +.++.+.|.++.++.++|||++|||++++          .++||||++|++ ++...|+++++
T Consensus       199 ~r~~l~~~L~~l~~~~~~TII~iTHdl~e~----------~~l~DrI~vl~~G~iv~~g~~~ei  252 (382)
T TIGR03415       199 IRTQLQDELLELQAKLNKTIIFVSHDLDEA----------LKIGNRIAIMEGGRIIQHGTPEEI  252 (382)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEecCHHHH
Confidence             45788999998765689999999999999          999999999999 99888987654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=9.7e-29  Score=216.16  Aligned_cols=160  Identities=16%  Similarity=0.085  Sum_probs=119.9

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeec-c-ch
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIK-S-SK   69 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~-~-~~   69 (240)
                      .|+++|++++|          |+|+||+|++||+++|+||||||||||+ ++|+|+        .++|+++.... . ..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLL-QHLNGLLQPTSGTVTIGERVITAGKKNKKL   80 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence            38899999887          6899999999999999999999999999 999997        23444432110 0 01


Q ss_pred             hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304           70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD  104 (240)
Q Consensus        70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~  104 (240)
                      .......+|++|++  .+++ .++.+++.+...                   +                        +..
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAra  159 (290)
T PRK13634         81 KPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGV  159 (290)
T ss_pred             HHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            11122358999975  3443 455554432110                   0                        112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++||||||++      +..++++|++++++.|.|||++|||++++          ..+||||++|++ ++...|+
T Consensus       160 L~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~----------~~~~drv~~l~~G~i~~~g~  229 (290)
T PRK13634        160 LAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDA----------ARYADQIVVMHKGTVFLQGT  229 (290)
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECC
Confidence            589999999999988      45788999999764699999999999999          899999999999 8888888


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      ++.+
T Consensus       230 ~~~~  233 (290)
T PRK13634        230 PREI  233 (290)
T ss_pred             HHHH
Confidence            7653

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.96  E-value=1.4e-28  Score=206.54  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=116.7

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|+++.|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...  ... ....
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~--~~~-~~~~   76 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTL-KMLTGELRPTSGTAYINGYSIRTD--RKA-ARQS   76 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEecccc--hHH-Hhhh
Confidence            4678888776       7899999999999999999999999999 9999972        233333211  111 1223


Q ss_pred             CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll  113 (240)
                      .+|++|+..+++..++.++..+...                   +                       ...++.+|++|+
T Consensus        77 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll  156 (220)
T cd03263          77 LGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL  156 (220)
T ss_pred             EEEecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            5899998877776676655443210                   0                       112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ||||++      ...+.+.|+++++  +.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       157 lDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~----------~~~~d~i~~l~~g~i~~~~~~~~  218 (220)
T cd03263         157 LDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMDEA----------EALCDRIAIMSDGKLRCIGSPQE  218 (220)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHHHH----------HHhcCEEEEEECCEEEecCCHHH
Confidence            999988      4578888988865  48999999999999          899999999998 8877776543

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-28  Score=217.12  Aligned_cols=163  Identities=13%  Similarity=0.035  Sum_probs=122.2

Q ss_pred             CCCceEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEee--
Q 026304            6 LKPAAVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMI--   65 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~--   65 (240)
                      ...++|+++|++++|          |+|+||+|++|++++|+||||||||||+ ++|+|+        .++|.++...  
T Consensus        17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~L~Gl~~p~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLV-THFNGLIKSKYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEEECCEEcccccc
Confidence            345689999999987          7899999999999999999999999999 999997        2344443221  


Q ss_pred             -----------c-cchhcccCCCeEEEccC--ceecceecCcchhHHH------------h-------------------
Q 026304           66 -----------K-SSKDTRYAIDSVVTHDG--AKLPCWALPELTSFRQ------------K-------------------  100 (240)
Q Consensus        66 -----------~-~~~~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~------------~-------------------  100 (240)
                                 + ..........+|++|++  .+++. ++.+++.+..            +                   
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  174 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP  174 (320)
T ss_pred             cccccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence                       0 00111122358999986  35543 5544432210            0                   


Q ss_pred             ------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhc
Q 026304          101 ------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLA  162 (240)
Q Consensus       101 ------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~a  162 (240)
                                  ++..++.+|++||||||++      ...++++|.++.+ +|.|||++|||++++          ..+|
T Consensus       175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtHd~~~~----------~~~a  243 (320)
T PRK13631        175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITHTMEHV----------LEVA  243 (320)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhC
Confidence                        0122589999999999988      4578899988876 699999999999999          8999


Q ss_pred             cceeeecc-eeeccCCccee
Q 026304          163 DTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       163 d~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||+++|++ ++...|+++.+
T Consensus       244 dri~vl~~G~i~~~g~~~~~  263 (320)
T PRK13631        244 DEVIVMDKGKILKTGTPYEI  263 (320)
T ss_pred             CEEEEEECCEEEEeCCHHHH
Confidence            99999999 88888887653

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=1.6e-28  Score=211.31  Aligned_cols=160  Identities=20%  Similarity=0.160  Sum_probs=119.6

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++|+++.|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...+..  .....
T Consensus         1 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~G~i~~~g~~~~~~~~~--~~~~~   77 (258)
T PRK13548          1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLL-RALSGELSPDSGEVRLNGRPLADWSPA--ELARR   77 (258)
T ss_pred             CeEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcccCCHH--Hhhhh
Confidence            378999999998     9999999999999999999999999999 9999972        233333222111  11123


Q ss_pred             CeEEEccCceecceecCcchhHHH------------h-------h-----------------------chhhh------c
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ------------K-------L-----------------------GDDAY------A  107 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~------------~-------~-----------------------~~~l~------~  107 (240)
                      .+|++|+..++...++.++..+..            .       +                       ...++      .
T Consensus        78 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~  157 (258)
T PRK13548         78 RAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG  157 (258)
T ss_pred             eEEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence            589999877655556655433210            0       0                       01135      4


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+||||++      +..+.++|++++++.|.|||++|||++++          ..+||++++|++ ++...|++++
T Consensus       158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  227 (258)
T PRK13548        158 PPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLA----------ARYADRIVLLHQGRLVADGTPAE  227 (258)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhcCEEEEEECCEEEeeCCHHH
Confidence            899999999988      45788999998733689999999999999          889999999998 8877777654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       228 ~  228 (258)
T PRK13548        228 V  228 (258)
T ss_pred             H
Confidence            3

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.96  E-value=1.7e-28  Score=210.26  Aligned_cols=160  Identities=16%  Similarity=0.096  Sum_probs=121.3

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeec-------c---
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIK-------S---   67 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~-------~---   67 (240)
                      |+++||++.|     ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|.++...+       +   
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~   79 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTIL-RILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE   79 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence            4789999988     8999999999999999999999999999 9999972        3444443221       0   


Q ss_pred             c-hhcccCCCeEEEccCceecceecCcchhHHH-------------h-------h-----------------------ch
Q 026304           68 S-KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L-----------------------GD  103 (240)
Q Consensus        68 ~-~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-----------------------~~  103 (240)
                      . ........+|++|+..+++..++.++..+..             .       +                       ..
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar  159 (252)
T TIGR03005        80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR  159 (252)
T ss_pred             hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence            0 0011223589999888777667665554310             0       0                       11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++||||||++      +..+.++|+++.++.|.|||++|||++++          ..+||++++|++ ++...|
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~g  229 (252)
T TIGR03005       160 ALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFA----------REFADRVCFFDKGRIVEQG  229 (252)
T ss_pred             HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeC
Confidence            2588999999999987      45788999988764589999999999999          899999999999 887777


Q ss_pred             Cccee
Q 026304          177 KRAFF  181 (240)
Q Consensus       177 ~~~~~  181 (240)
                      +++.+
T Consensus       230 ~~~~~  234 (252)
T TIGR03005       230 KPDEI  234 (252)
T ss_pred             CHHHH
Confidence            66543

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.96  E-value=1.2e-28  Score=208.03  Aligned_cols=155  Identities=16%  Similarity=0.136  Sum_probs=115.2

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-----h--CC------ceEEeeccchhcc
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-----D--NG------RNIAMIKSSKDTR   72 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-----~--~g------~~i~~~~~~~~~~   72 (240)
                      |+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+.     .  .|      +++...+......
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLL-RLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL   79 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence            4789999988     8999999999999999999999999999 9999975     2  23      2221111001111


Q ss_pred             cCCCeEEEccCceecceecCcchhHHH-------------h-------h-------------------------chhhhc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L-------------------------GDDAYA  107 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~-------------------------~~~l~~  107 (240)
                      ....+|++|+..++ .+++.++..+..             .       +                         ...++.
T Consensus        80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~  158 (227)
T cd03260          80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN  158 (227)
T ss_pred             HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence            12358999987666 556554432210             0       0                         112588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      +|++|+||||++      +..++++|+++++ + .|||++|||++++          ..+||++++|++ ++...|+++
T Consensus       159 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~  225 (227)
T cd03260         159 EPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQQA----------ARVADRTAFLLNGRLVEFGPTE  225 (227)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHHHH----------HHhCCEEEEEeCCEEEEecCcc
Confidence            999999999988      4578999999876 5 8999999999999          899999999999 887777654

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.2e-28  Score=211.26  Aligned_cols=161  Identities=18%  Similarity=0.138  Sum_probs=121.4

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      ..+|+++|++++|     ++++||++.+|++++|+||||||||||+ ++|+|+.        ++|+++...+.. ..+ .
T Consensus         5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~   81 (265)
T PRK10253          5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLL-RTLSRLMTPAHGHVWLDGEHIQHYASK-EVA-R   81 (265)
T ss_pred             ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEEhhhCCHH-HHh-h
Confidence            3589999999998     9999999999999999999999999999 9999972        233333221111 111 2


Q ss_pred             CCeEEEccCceecceecCcchhHH-----------------------Hhh-----------------------chhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-----------------------GDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-----------------------~~~l~~~  108 (240)
                      ..+|++|+..+++..++.++..+.                       ..+                       +..++.+
T Consensus        82 ~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~  161 (265)
T PRK10253         82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQE  161 (265)
T ss_pred             heEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcC
Confidence            358999987666554444332210                       000                       1225899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++||||||++      +..+.++|.++.++.|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  231 (265)
T PRK10253        162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQA----------CRYASHLIALREGKIVAQGAPKEI  231 (265)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999987      45788999988764589999999999999          999999999999 88888876543

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.96  E-value=4.2e-29  Score=199.87  Aligned_cols=158  Identities=18%  Similarity=0.145  Sum_probs=130.5

Q ss_pred             eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCeE
Q 026304           10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      |+.+++|+++|   --..+++|+.||+++|+||||||||||| ++|+|+        .++|++....+|..   +. ..+
T Consensus         1 ~l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLL-nLIAGF~~P~~G~i~i~g~d~t~~~P~~---RP-VSm   75 (231)
T COG3840           1 MLALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLL-NLIAGFETPASGEILINGVDHTASPPAE---RP-VSM   75 (231)
T ss_pred             CccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHH-HHHHhccCCCCceEEEcCeecCcCCccc---CC-hhh
Confidence            57889999999   3367889999999999999999999999 999997        45677766655532   22 378


Q ss_pred             EEccCceecceecCcchhHHHh----------------------------h-----c---------hhhhccCcEEEEcC
Q 026304           79 VTHDGAKLPCWALPELTSFRQK----------------------------L-----G---------DDAYAKLDVIGIDE  116 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~~~~~~----------------------------~-----~---------~~l~~~p~lllLDE  116 (240)
                      +||++++|..+++.+|..+...                            +     +         ..++++-++++|||
T Consensus        76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE  155 (231)
T COG3840          76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE  155 (231)
T ss_pred             hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence            9999999999999887654211                            0     1         12588999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      |++      +.+++.++.+++++++.|++||||.++.+          ..++|+++++++ ++.+.|+...+.
T Consensus       156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da----------~~ia~~~~fl~~Gri~~~g~~~~~~  218 (231)
T COG3840         156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDA----------ARIADRVVFLDNGRIAAQGSTQELL  218 (231)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH----------HHhhhceEEEeCCEEEeeccHHHHh
Confidence            977      56899999999988999999999999999          999999999999 999988765543

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.2e-28  Score=209.62  Aligned_cols=160  Identities=13%  Similarity=0.088  Sum_probs=118.2

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSS   68 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~   68 (240)
                      ++++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.       ..|.      ++...+..
T Consensus         3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~   81 (253)
T PRK14242          3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFL-RCLNRMNDLIPGARVEGEILLDGENIYDPHVD   81 (253)
T ss_pred             CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCCceEEEECCEEccccccC
Confidence            35689999999998     8999999999999999999999999999 9999973       1232      22110000


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------  101 (240)
                      ........+|++|+..+++. ++.++..+..                    .+                           
T Consensus        82 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l  160 (253)
T PRK14242         82 VVELRRRVGMVFQKPNPFPK-SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI  160 (253)
T ss_pred             HHHHhhcEEEEecCCCCCcC-cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence            01112235899998766653 5544432210                    00                           


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ...++.+|++||||||++      +..+.++|+++.+  +.|||++|||++++          ..+||++++|++ ++..
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~~~~----------~~~~d~v~~l~~G~i~~  228 (253)
T PRK14242        161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNMQQA----------ARVSDVTAFFYMGKLIE  228 (253)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecHHHH----------HHhCCEEEEEECCEEEE
Confidence            112588999999999988      4578899988843  68999999999999          899999999998 8877


Q ss_pred             cCCcce
Q 026304          175 CGKRAF  180 (240)
Q Consensus       175 ~g~~~~  180 (240)
                      .|+++.
T Consensus       229 ~g~~~~  234 (253)
T PRK14242        229 VGPTEQ  234 (253)
T ss_pred             eCCHHH
Confidence            777654

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.95  E-value=2.4e-28  Score=210.54  Aligned_cols=163  Identities=18%  Similarity=0.163  Sum_probs=122.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----------CCceEEeec--c-c
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----------NGRNIAMIK--S-S   68 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----------~g~~i~~~~--~-~   68 (240)
                      .++|+++||+++|     ++++||++.+||+++|+||||||||||+ ++|+|+.-           +|.++....  . .
T Consensus         2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~   80 (262)
T PRK09984          2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLL-RHLSGLITGDKSAGSHIELLGRTVQREGRLARD   80 (262)
T ss_pred             CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCCCCCCceEEEECCEecccccccchh
Confidence            3589999999998     8999999999999999999999999999 99999742           122221110  0 0


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHH--------------------Hh-------h--------------------
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QK-------L--------------------  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~-------~--------------------  101 (240)
                      ........+|++|+..+++.+++.++..+.                    ..       +                    
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr  160 (262)
T PRK09984         81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR  160 (262)
T ss_pred             HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHH
Confidence            011112348999988777766665544321                    00       0                    


Q ss_pred             ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                         ...++.+|++||||||++      +..+.+.|++++++.|.|||++|||++++          ..+||++++|++ +
T Consensus       161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~----------~~~~d~i~~l~~g~  230 (262)
T PRK09984        161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYA----------LRYCERIVALRQGH  230 (262)
T ss_pred             HHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCE
Confidence               112588999999999988      45788999998764589999999999999          899999999999 8


Q ss_pred             eeccCCccee
Q 026304          172 CELCGKRAFF  181 (240)
Q Consensus       172 ~~~~g~~~~~  181 (240)
                      +...|+++.+
T Consensus       231 i~~~g~~~~~  240 (262)
T PRK09984        231 VFYDGSSQQF  240 (262)
T ss_pred             EEEeCCHHHh
Confidence            8888877654

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-28  Score=210.02  Aligned_cols=163  Identities=13%  Similarity=0.104  Sum_probs=121.3

Q ss_pred             CCCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeec
Q 026304            5 NLKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIK   66 (240)
Q Consensus         5 ~~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~   66 (240)
                      +...++|+++|+++.|     ++++||+|++|++++|+||||||||||+ ++|+|+.       ..|.      ++....
T Consensus         7 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~   85 (258)
T PRK14268          7 NVAQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFI-RCLNRMNDLIKNCRIEGKVSIEGEDIYEPD   85 (258)
T ss_pred             cccceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCcccCCCcceEEEECCEEccccc
Confidence            3456799999999998     8999999999999999999999999999 9999973       2342      221110


Q ss_pred             cchhcccCCCeEEEccCceecceecCcchhHHH-------------------hh--------------------------
Q 026304           67 SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------------KL--------------------------  101 (240)
Q Consensus        67 ~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------------~~--------------------------  101 (240)
                      ..........+|++|+..+++ .++.++..+..                   .+                          
T Consensus        86 ~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~  164 (258)
T PRK14268         86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLC  164 (258)
T ss_pred             chHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHH
Confidence            000111223589999877666 55554443210                   00                          


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++||||||++      +..+.++|+++.+  +.|||++|||++++          ..+||++++|++ ++.
T Consensus       165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~  232 (258)
T PRK14268        165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNMQQA----------ARISDYTGFFLMGELI  232 (258)
T ss_pred             HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHH----------HHhCCEEEEEECCEEE
Confidence             112588999999999988      4578888988853  79999999999999          899999999999 888


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+++.+
T Consensus       233 ~~~~~~~~  240 (258)
T PRK14268        233 EFGQTRQI  240 (258)
T ss_pred             EeCCHHHH
Confidence            77776543

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2e-28  Score=229.42  Aligned_cols=160  Identities=14%  Similarity=0.101  Sum_probs=122.1

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .+||+++|++++|     ++|+||+|++||+++|+||||||||||+ ++|+|+.        ++|+++...++... +..
T Consensus         3 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~-~~~   80 (510)
T PRK09700          3 TPYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLM-KVLSGIHEPTKGTITINNINYNKLDHKLA-AQL   80 (510)
T ss_pred             CceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCcCCCccEEEECCEECCCCCHHHH-HHC
Confidence            3689999999998     8999999999999999999999999999 9999973        33443322221111 112


Q ss_pred             CCeEEEccCceecceecCcchhHH-------------------Hh-------h-----------------------chhh
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR-------------------QK-------L-----------------------GDDA  105 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~-------------------~~-------~-----------------------~~~l  105 (240)
                      ..+|++|+..+++.+++.++..+.                   ..       +                       +..+
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al  160 (510)
T PRK09700         81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTL  160 (510)
T ss_pred             CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHH
Confidence            358999987666655554332210                   00       0                       1125


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|||||||+      +..++++|+++++ .|+|||++|||++++          ..+||++++|++ ++...|++
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~~~----------~~~~d~v~~l~~G~i~~~g~~  229 (510)
T PRK09700        161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLAEI----------RRICDRYTVMKDGSSVCSGMV  229 (510)
T ss_pred             hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEeeecch
Confidence            89999999999988      4578999999987 699999999999999          899999999998 88777776


Q ss_pred             ce
Q 026304          179 AF  180 (240)
Q Consensus       179 ~~  180 (240)
                      +.
T Consensus       230 ~~  231 (510)
T PRK09700        230 SD  231 (510)
T ss_pred             hh
Confidence            54

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.8e-28  Score=215.84  Aligned_cols=159  Identities=17%  Similarity=0.116  Sum_probs=118.8

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeec-----
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIK-----   66 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~-----   66 (240)
                      +|+++|+++.|          ++++||+|.+||+++|+||||||||||+ ++|+|+.  ..|      +++....     
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~   80 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFI-EHLNALLLPDTGTIEWIFKDEKNKKKTKEK   80 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEEeceecccccccccc
Confidence            48999999988          6799999999999999999999999999 9999972  223      2221000     


Q ss_pred             -----------------cchhcccCCCeEEEccC--ceecceecCcchhHHHh---------------------h-----
Q 026304           67 -----------------SSKDTRYAIDSVVTHDG--AKLPCWALPELTSFRQK---------------------L-----  101 (240)
Q Consensus        67 -----------------~~~~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~---------------------~-----  101 (240)
                                       ..........+|+||++  .++ ..++.+++.+...                     +     
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~  159 (305)
T PRK13651         81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYL  159 (305)
T ss_pred             cccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhh
Confidence                             00111123358999974  333 3455554433110                     0     


Q ss_pred             -----------------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHH
Q 026304          102 -----------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDI  158 (240)
Q Consensus       102 -----------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L  158 (240)
                                       +..++.+|++||||||++      +..++++|+++++ .|.|||++|||++++          
T Consensus       160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~----------  228 (305)
T PRK13651        160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIILVTHDLDNV----------  228 (305)
T ss_pred             hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeeCHHHH----------
Confidence                             112589999999999988      4578999999886 699999999999999          


Q ss_pred             Hhhccceeeecc-eeeccCCccee
Q 026304          159 IPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       159 ~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ..+||||++|++ ++...|+++++
T Consensus       229 ~~~adrv~vl~~G~i~~~g~~~~~  252 (305)
T PRK13651        229 LEWTKRTIFFKDGKIIKDGDTYDI  252 (305)
T ss_pred             HHhCCEEEEEECCEEEEECCHHHH
Confidence            899999999999 88888887654

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.8e-28  Score=212.17  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=122.5

Q ss_pred             EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------------hCCceEEeeccc
Q 026304           11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------------DNGRNIAMIKSS   68 (240)
Q Consensus        11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------------~~g~~i~~~~~~   68 (240)
                      |+++||+..|         ++||||++++||+++|+|.|||||||+. +.|+|+.             ++|+++..++..
T Consensus         2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~-~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLA-KAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHH-HHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            7899999988         7899999999999999999999999999 9999862             345555555443


Q ss_pred             h--hcccCCCeEEEccCc--eecceecCcch---------------------hHHHhh-----------------ch---
Q 026304           69 K--DTRYAIDSVVTHDGA--KLPCWALPELT---------------------SFRQKL-----------------GD---  103 (240)
Q Consensus        69 ~--~~~~~~~~~v~q~~~--~~~~~~~~~~~---------------------~~~~~~-----------------~~---  103 (240)
                      .  ..|.+.++++||++.  +.|.+++.+..                     .+...+                 ||   
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence            2  234445689999853  33333322100                     000000                 11   


Q ss_pred             ------hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304          104 ------DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-  170 (240)
Q Consensus       104 ------~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-  170 (240)
                            .++.+|++||.||||+      +.+++++|+++.++.|.++|++|||+..+          .++||||++|++ 
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv----------a~~aDri~VMYaG  230 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV----------AEIADRVAVMYAG  230 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhcceEEEEECc
Confidence                  1588999999999988      56899999999987899999999999999          999999999999 


Q ss_pred             eeeccCCcce
Q 026304          171 RCELCGKRAF  180 (240)
Q Consensus       171 ~~~~~g~~~~  180 (240)
                      +++..|+.+.
T Consensus       231 ~iVE~g~~~~  240 (316)
T COG0444         231 RIVEEGPVEE  240 (316)
T ss_pred             EEEEeCCHHH
Confidence            9999998754

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.95  E-value=3.3e-28  Score=202.97  Aligned_cols=152  Identities=20%  Similarity=0.151  Sum_probs=113.8

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-hcccCCCeEEEccC
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-DTRYAIDSVVTHDG   83 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-~~~~~~~~~v~q~~   83 (240)
                      ++++|+++.|     ++++||++.+|++++|+||||||||||+ ++|+|+. ...-.+....... .......+|++|+.
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~   79 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTI-RMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER   79 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence            4688999988     8999999999999999999999999999 9999972 2111222111110 01112358999988


Q ss_pred             ceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC--
Q 026304           84 AKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF--  119 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~--  119 (240)
                      .+++..++.++..+....                                          ...++.+|++|+||||++  
T Consensus        80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L  159 (210)
T cd03269          80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL  159 (210)
T ss_pred             cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            777776776654332110                                          111588999999999987  


Q ss_pred             ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                          +..+.+.|+++.+ ++.|||++|||++++          ..+||++++|++ ++..
T Consensus       160 D~~~~~~~~~~l~~~~~-~~~tii~~sH~~~~~----------~~~~d~i~~l~~g~i~~  208 (210)
T cd03269         160 DPVNVELLKDVIRELAR-AGKTVILSTHQMELV----------EELCDRVLLLNKGRAVL  208 (210)
T ss_pred             CHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHH----------HHhhhEEEEEeCCEEEe
Confidence                4578889988876 589999999999999          899999999988 6543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.95  E-value=2.9e-28  Score=210.48  Aligned_cols=161  Identities=14%  Similarity=0.061  Sum_probs=118.3

Q ss_pred             eEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc
Q 026304           10 AVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS   67 (240)
Q Consensus        10 ~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~   67 (240)
                      ||+++|+++.|              ++|+||+|++||+++|+||||||||||+ ++|+|+.        ++|.++...+.
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~   80 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLA-RLLLGLEKPAQGTVSFRGQDLYQLDR   80 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEccccCH
Confidence            68899998876              6799999999999999999999999999 9999972        34444332221


Q ss_pred             ch-hcccCCCeEEEccC--ceecceecCcchhHH--------------------Hhh-----------------------
Q 026304           68 SK-DTRYAIDSVVTHDG--AKLPCWALPELTSFR--------------------QKL-----------------------  101 (240)
Q Consensus        68 ~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~--------------------~~~-----------------------  101 (240)
                      .. .......+|++|++  .+++..++.+++.+.                    ..+                       
T Consensus        81 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~  160 (265)
T TIGR02769        81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRIN  160 (265)
T ss_pred             HHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHH
Confidence            11 01122358999985  344444544432110                    000                       


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++||||||++      ...+.++|+++.++.|.|||++|||++++          ..+||++++|++ ++.
T Consensus       161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~  230 (265)
T TIGR02769       161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLV----------QSFCQRVAVMDKGQIV  230 (265)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH----------HHHhcEEEEEeCCEEE
Confidence             112588999999999987      35788999998764589999999999999          889999999999 888


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+++.+
T Consensus       231 ~~g~~~~~  238 (265)
T TIGR02769       231 EECDVAQL  238 (265)
T ss_pred             EECCHHHH
Confidence            77776543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.95  E-value=2.1e-28  Score=217.60  Aligned_cols=163  Identities=14%  Similarity=0.054  Sum_probs=122.0

Q ss_pred             CceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----CC------ceEEeecc
Q 026304            8 PAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----NG------RNIAMIKS   67 (240)
Q Consensus         8 ~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----~g------~~i~~~~~   67 (240)
                      .++|+++|+++.|         ++||||+|++||+++|+|+||||||||+ ++|+|+.-     .|      +++..++.
T Consensus        10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~-~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~   88 (330)
T PRK09473         10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA-FALMGLLAANGRIGGSATFNGREILNLPE   88 (330)
T ss_pred             CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence            4589999999887         7899999999999999999999999999 99999732     23      33322222


Q ss_pred             chh--cccCCCeEEEccC--ceecceecCcchhH--------------------HHhh----------------------
Q 026304           68 SKD--TRYAIDSVVTHDG--AKLPCWALPELTSF--------------------RQKL----------------------  101 (240)
Q Consensus        68 ~~~--~~~~~~~~v~q~~--~~~~~~~~~~~~~~--------------------~~~~----------------------  101 (240)
                      ...  .|....+|+||+.  .+.+.+++.+++..                    ...+                      
T Consensus        89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q  168 (330)
T PRK09473         89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ  168 (330)
T ss_pred             HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence            111  1223468999986  44554444322110                    0000                      


Q ss_pred             ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304          102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-  170 (240)
Q Consensus       102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-  170 (240)
                          +..++.+|++||+||||+      +.+++++|+++.++.|.|+|++|||++.+          ..+||||++|++ 
T Consensus       169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~----------~~~~Dri~vm~~G  238 (330)
T PRK09473        169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVV----------AGICDKVLVMYAG  238 (330)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHH----------HHhCCEEEEEECC
Confidence                112589999999999988      45799999999875699999999999999          889999999999 


Q ss_pred             eeeccCCccee
Q 026304          171 RCELCGKRAFF  181 (240)
Q Consensus       171 ~~~~~g~~~~~  181 (240)
                      +++..|+++.+
T Consensus       239 ~ive~g~~~~i  249 (330)
T PRK09473        239 RTMEYGNARDV  249 (330)
T ss_pred             EEEEECCHHHH
Confidence            99888876543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-28  Score=213.89  Aligned_cols=159  Identities=18%  Similarity=0.113  Sum_probs=121.2

Q ss_pred             ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304            9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus         9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      ++|+++|+++.|        |+|+||+|++||+++|+||||||||||+ ++|+|+        .++|.++...+.. ..+
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~-~~~   80 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTV-RLIDGLLEAESGQIIIDGDLLTEENVW-DIR   80 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECCcCcHH-HHH
Confidence            379999999987        7899999999999999999999999999 999997        2344444321111 112


Q ss_pred             cCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhccC
Q 026304           73 YAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKL  109 (240)
Q Consensus        73 ~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p  109 (240)
                       ...+|++|++. .+...++.++..+...                   +                       +..++.+|
T Consensus        81 -~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p  159 (279)
T PRK13650         81 -HKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRP  159 (279)
T ss_pred             -hhceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence             23589999863 4555566655443210                   0                       11258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++||||||++      +..++++|++++++.|+|||++|||++.+          . +|||+++|++ ++...|+++.+
T Consensus       160 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~----------~-~~dri~~l~~G~i~~~g~~~~~  227 (279)
T PRK13650        160 KIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV----------A-LSDRVLVMKNGQVESTSTPREL  227 (279)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------H-hCCEEEEEECCEEEEECCHHHH
Confidence            9999999988      45788999999864599999999999988          5 7999999999 88888887653

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.8e-28  Score=212.94  Aligned_cols=160  Identities=18%  Similarity=0.157  Sum_probs=119.3

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      ||+++|++++|      ++++||+|.+||+++|+||||||||||+ ++|+|+.        ++|+++...+.........
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   79 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLF-LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT   79 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence            58899999988      8899999999999999999999999999 9999972        3444432111111111233


Q ss_pred             CeEEEccCc-eecceecCcchhHHH------------h-------h-----------------------chhhhccCcEE
Q 026304           76 DSVVTHDGA-KLPCWALPELTSFRQ------------K-------L-----------------------GDDAYAKLDVI  112 (240)
Q Consensus        76 ~~~v~q~~~-~~~~~~~~~~~~~~~------------~-------~-----------------------~~~l~~~p~ll  112 (240)
                      .+|++|+.. .+...++.++..+..            .       +                       +..++.+|++|
T Consensus        80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  159 (275)
T PRK13639         80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEII  159 (275)
T ss_pred             eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            589999852 222235555443211            0       0                       11258999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||++      +..++++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       160 llDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  224 (275)
T PRK13639        160 VLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVDLV----------PVYADKVYVMSDGKIIKEGTPKEV  224 (275)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            9999988      4578899999876 599999999999999          889999999998 88888887654

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-28  Score=220.00  Aligned_cols=160  Identities=17%  Similarity=0.127  Sum_probs=123.6

Q ss_pred             eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc--hhcccCCC
Q 026304           10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS--KDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~--~~~~~~~~   76 (240)
                      ||++ ||+++|   ..++||++++||+++|+||||||||||+ ++|+|+.        ++|+++......  .....+..
T Consensus         1 ~l~~-~l~k~~~~~~~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i   78 (352)
T PRK11144          1 MLEL-NFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLI-NAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI   78 (352)
T ss_pred             CeEE-EEEEEeCCEEEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence            5788 999998   4489999999999999999999999999 9999972        334333211000  01112235


Q ss_pred             eEEEccCceecceecCcchhHHHh-------------h-----------------------chhhhccCcEEEEcCccC-
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-------------L-----------------------GDDAYAKLDVIGIDEAQF-  119 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------~-----------------------~~~l~~~p~lllLDEP~~-  119 (240)
                      +|++|+..+++.+++.++..+...             +                       +..++.+|++||||||++ 
T Consensus        79 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~  158 (352)
T PRK11144         79 GYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS  158 (352)
T ss_pred             EEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            899999999988888777654210             0                       122589999999999988 


Q ss_pred             -----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          120 -----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       120 -----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                           +..+.+.|+++.++.|.|+|++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       159 LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~----------~~~~d~i~~l~~G~i~~~g~~~~i  216 (352)
T PRK11144        159 LDLPRKRELLPYLERLAREINIPILYVSHSLDEI----------LRLADRVVVLEQGKVKAFGPLEEV  216 (352)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH----------HHhCCEEEEEeCCEEEEecCHHHH
Confidence                 45788999998774589999999999999          999999999999 88888887643

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.5e-28  Score=217.20  Aligned_cols=161  Identities=11%  Similarity=0.051  Sum_probs=119.6

Q ss_pred             ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------------CCceEEeecc
Q 026304            9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------------NGRNIAMIKS   67 (240)
Q Consensus         9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------------~g~~i~~~~~   67 (240)
                      ++|+++||+++|         +++|||+|.+||+++|+|+||||||||+ ++|+|+.-            +|+++...+.
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl-~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIA-KAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            379999999987         7899999999999999999999999999 99999741            2333322222


Q ss_pred             chh--cccCCCeEEEccCc--eecceecCcchhH-------------------------HHhh-----------------
Q 026304           68 SKD--TRYAIDSVVTHDGA--KLPCWALPELTSF-------------------------RQKL-----------------  101 (240)
Q Consensus        68 ~~~--~~~~~~~~v~q~~~--~~~~~~~~~~~~~-------------------------~~~~-----------------  101 (240)
                      ...  .+....+|+||++.  +.+.+++.+++..                         ...+                 
T Consensus        81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS  160 (330)
T PRK15093         81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT  160 (330)
T ss_pred             HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence            111  11224589999864  3343333221110                         0000                 


Q ss_pred             ---------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee
Q 026304          102 ---------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT  166 (240)
Q Consensus       102 ---------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~  166 (240)
                               +..++.+|++||+|||++      +.+++++|+++.++.|.|||++|||++.+          ..+||||+
T Consensus       161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v----------~~~~dri~  230 (330)
T PRK15093        161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQML----------SQWADKIN  230 (330)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhCCEEE
Confidence                     112589999999999988      46899999999875699999999999999          99999999


Q ss_pred             eecc-eeeccCCcce
Q 026304          167 KLTA-RCELCGKRAF  180 (240)
Q Consensus       167 ~l~~-~~~~~g~~~~  180 (240)
                      +|++ +++..|+++.
T Consensus       231 vm~~G~ive~g~~~~  245 (330)
T PRK15093        231 VLYCGQTVETAPSKE  245 (330)
T ss_pred             EEECCEEEEECCHHH
Confidence            9999 9988887654

>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]

Probab=99.95  E-value=3.5e-28  Score=196.76  Aligned_cols=186  Identities=34%  Similarity=0.524  Sum_probs=161.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      ..|.++.+.|||+|||||.|++.+..+...|+++..+.+..+.|++...+.++.+...++..+....++...+....-..
T Consensus         2 ~~g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~   81 (201)
T COG1435           2 KMGWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKP   81 (201)
T ss_pred             ceEEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCC
Confidence            36889999999999999988899988899999999999999999887777888888888887777777766653221111


Q ss_pred             -CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304          109 -LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT  186 (240)
Q Consensus       109 -p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~  186 (240)
                       .+++++||.+|++ ++...|.+++++.|..|++.+.|.+|.+|+|+++..|+.+||+|..|+..|..||.+++++.|+.
T Consensus        82 ~~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrgepFe~s~~Lla~ADkv~kL~aIC~~Cg~~At~~~Rl~  161 (201)
T COG1435          82 PVDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGEPFEGSKYLLAIADKVTKLKAICNVCGRKATRTLRLI  161 (201)
T ss_pred             CcCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccccccccCCCccHHHHHHHHHHHHHHHHHHHHhCCcceEEEEec
Confidence             4799999999964 78899999998559999999999999999999999999999999999999999999999999998


Q ss_pred             CC------CcEEEeCCcceEEeecchhhccCccc
Q 026304          187 EE------TETEIIGGADVYMPVCRQHYVNGQVV  214 (240)
Q Consensus       187 ~~------~~~~~~g~~~~y~~~c~~~~~~~~~~  214 (240)
                      ++      ++++.+||.+.|.++||+||......
T Consensus       162 ~~~~a~~~~~~i~IGg~e~Y~a~CR~h~~~~~~~  195 (201)
T COG1435         162 NGGPAVYEGPQILIGGNESYEARCRKHHKEPGKE  195 (201)
T ss_pred             CCCCCccCCCeEEECCCcceeehhhhhhhccccc
Confidence            75      67889999999999999999765433

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.95  E-value=2.5e-28  Score=203.82  Aligned_cols=148  Identities=13%  Similarity=0.147  Sum_probs=113.9

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++| +++|+||||||||||+ ++|+|+.        ++|.++...+  ...+ ...+
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~-~~i~   75 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLM-RILATLTPPSSGTIRIDGQDVLKQP--QKLR-RRIG   75 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCCccccch--HHHH-hheE
Confidence            4788999988     89999999999 9999999999999999 9999972        2343332211  1112 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++.+++.++..+...                   +                       +..++.+|++||||
T Consensus        76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  155 (211)
T cd03264          76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD  155 (211)
T ss_pred             EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999888777777665543110                   0                       11258999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ||++      +..+.++|+++++  +.|||++|||++++          ..+|||+++|++ ++...
T Consensus       156 EPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~----------~~~~d~i~~l~~g~i~~~  210 (211)
T cd03264         156 EPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVEDV----------ESLCNQVAVLNKGKLVFE  210 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEec
Confidence            9988      4578889988875  48999999999999          889999999998 76544

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.1e-28  Score=212.65  Aligned_cols=160  Identities=16%  Similarity=0.117  Sum_probs=120.4

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .+++++|++++|      ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|+++...+.  .....
T Consensus         2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~   78 (277)
T PRK13652          2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLF-RHFNGILKPTSGSVLIRGEPITKENI--REVRK   78 (277)
T ss_pred             ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCH--HHHHh
Confidence            368999999988      8999999999999999999999999999 9999972        33443322111  11122


Q ss_pred             CCeEEEccCc-eecceecCcchhHHHh------------------------------------------hchhhhccCcE
Q 026304           75 IDSVVTHDGA-KLPCWALPELTSFRQK------------------------------------------LGDDAYAKLDV  111 (240)
Q Consensus        75 ~~~~v~q~~~-~~~~~~~~~~~~~~~~------------------------------------------~~~~l~~~p~l  111 (240)
                      ..+|++|++. .+...++.+++.+...                                          ++..++.+|++
T Consensus        79 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l  158 (277)
T PRK13652         79 FVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV  158 (277)
T ss_pred             heEEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            3589999863 2223455444432110                                          01225899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||||++      ...+.++++++.++.|.|||++|||++++          ..+|||+++|++ ++...|+++++
T Consensus       159 lilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~----------~~~~drv~~l~~G~i~~~g~~~~~  225 (277)
T PRK13652        159 LVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV----------PEMADYIYVMDKGRIVAYGTVEEI  225 (277)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCeEEEECCHHHH
Confidence            99999987      45788999998764589999999999999          899999999999 88888887654

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.95  E-value=2.8e-28  Score=202.26  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=117.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h-------CCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D-------NGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~-------~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|++++|     ++++||++.+||+++|+||||||||||+ ++|+|+.   .       +|+++...++....+ ..
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~-~~   78 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLA-KTIMGHPKYEVTEGEILFKGEDITDLPPEERAR-LG   78 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCccEEEECCEECCcCCHHHHhh-Cc
Confidence            4688999988     8999999999999999999999999999 9999972   1       233322221111111 22


Q ss_pred             CeEEEccCceecceecCcchhHH-----------HhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR-----------QKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTV  138 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tv  138 (240)
                      .+|++|+..+++..++.++....           ..+...++.+|++|+||||++      ...+.++|+++++ .+.||
T Consensus        79 i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~ti  157 (200)
T cd03217          79 IFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSV  157 (200)
T ss_pred             EEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEE
Confidence            58899988777766665544221           112345789999999999987      4578899999876 58999


Q ss_pred             EEEecChhhhhcccchHHHHHh-hccceeeecc-eeeccCC
Q 026304          139 VVAGLDGDYLRRSFGSVLDIIP-LADTVTKLTA-RCELCGK  177 (240)
Q Consensus       139 i~vtHd~~~~~~~f~~~~~L~~-~ad~i~~l~~-~~~~~g~  177 (240)
                      |++||+++.+          .. +||++++|++ ++...|+
T Consensus       158 ii~sh~~~~~----------~~~~~d~i~~l~~G~i~~~~~  188 (200)
T cd03217         158 LIITHYQRLL----------DYIKPDRVHVLYDGRIVKSGD  188 (200)
T ss_pred             EEEecCHHHH----------HHhhCCEEEEEECCEEEEEcc
Confidence            9999999988          77 7999999998 7776663

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]

Probab=99.95  E-value=5.5e-28  Score=193.80  Aligned_cols=199  Identities=61%  Similarity=1.039  Sum_probs=177.3

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchh-hh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDD-AY  106 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~-l~  106 (240)
                      -.+|++..|+||+.|||||-|++.+....+.|+.+...++..+.|+....++.+++.-++.+++.+ ..+...++.. +-
T Consensus        24 ~t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTRy~~~si~Thdg~~~~c~~lp~-a~~~s~f~~d~~~  102 (234)
T KOG3125|consen   24 MTRGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTRYESSSIVTHDGIEMPCWALPD-ASFLSEFGKDALN  102 (234)
T ss_pred             CCCceEEEEeccccCcchHHHHHHHHHHHhcCceEEEEEecCCcccchheeEeccCCcccccccCC-chhHHHHHHHHhc
Confidence            458999999999999999988788887788999999888888888876678899998888888887 3444444433 34


Q ss_pred             ccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304          107 AKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT  186 (240)
Q Consensus       107 ~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~  186 (240)
                      .+-++|.+||.+|+.++.+.++++++.+|++|++...|-+|.+++|+++..|..+||.+..|..+|..||..+.|+.|+.
T Consensus       103 ~~vdVigIDEaQFf~dl~efc~evAd~~Gk~VivagLdgdF~Rk~Fg~il~Lvplad~v~kLtavC~~Cg~~a~Ft~R~~  182 (234)
T KOG3125|consen  103 GDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVAGLDGDFKRKPFGAILDLVPLADSVTKLTAVCEECGADARFTLRKT  182 (234)
T ss_pred             CcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEEecCCchhhCcchhhhhhHhhhhhhhhhhhhhhhhcccceeEeeec
Confidence            48999999999999999999999998789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCcceEEeecchhhc-cCcccccccccccccccc
Q 026304          187 EETETEIIGGADVYMPVCRQHYV-NGQVVIGAARNVLEFHKV  227 (240)
Q Consensus       187 ~~~~~~~~g~~~~y~~~c~~~~~-~~~~~~~~~~~~~~~~~~  227 (240)
                      .+..+.++||.+.|.++|++||. -+..+.++.+..++..+-
T Consensus       183 ~~K~ve~iggaDvy~pvcr~~yv~~~~~~~e~~kt~~e~~dk  224 (234)
T KOG3125|consen  183 NDKEVEVIGGADVYMPVCRKCYVVCGQCATEKTKTVCEVSDK  224 (234)
T ss_pred             CCceeEEccCcceeecccceeEEEeccccchhhccccccCCC
Confidence            99999999999999999999998 788899999998876554

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.95  E-value=2.6e-28  Score=203.71  Aligned_cols=149  Identities=17%  Similarity=0.132  Sum_probs=113.5

Q ss_pred             EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304           11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      |+++|++++|   ..++||++.+|++++|+||||||||||+ ++|+|+.        ++|.++...++   .+ ...+|+
T Consensus         1 i~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~gl~~~~~G~i~~~g~~~~~~~~---~~-~~i~~~   75 (211)
T cd03298           1 VRLDKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLL-NLIAGFETPQSGRVLINGVDVTAAPP---AD-RPVSML   75 (211)
T ss_pred             CEEEeEEEEeCCEecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEEcCcCCH---hH-ccEEEE
Confidence            4688999998   4599999999999999999999999999 9999972        23333322111   12 235899


Q ss_pred             EccCceecceecCcchhHHH------------hh------------------------------chhhhccCcEEEEcCc
Q 026304           80 THDGAKLPCWALPELTSFRQ------------KL------------------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~~------------~~------------------------------~~~l~~~p~lllLDEP  117 (240)
                      +|+..+++..++.++..+..            ..                              ...++.+|++|+||||
T Consensus        76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP  155 (211)
T cd03298          76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP  155 (211)
T ss_pred             ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            99888777666655543210            00                              1125889999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ++      +..++++|++++++.+.|||++|||++++          ..+||++++|++ ++..
T Consensus       156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~  209 (211)
T cd03298         156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA----------KRLAQRVVFLDNGRIAA  209 (211)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HhhhCEEEEEECCEEee
Confidence            88      45788999988764589999999999999          899999999998 6653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.9e-28  Score=212.65  Aligned_cols=158  Identities=15%  Similarity=0.073  Sum_probs=118.1

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |++++|++++|      ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|.++...++.... ...
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-~~~   78 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLA-LHLNGLLRPQKGKVLVSGIDTGDFSKLQGI-RKL   78 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEECCccccHHHH-Hhh
Confidence            58899999988      8999999999999999999999999999 9999972        334333222111111 123


Q ss_pred             CeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhccCcEE
Q 026304           76 DSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVI  112 (240)
Q Consensus        76 ~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~ll  112 (240)
                      .+|++|++. .+...++.+++.+...                   +                       +..++.+|++|
T Consensus        79 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  158 (274)
T PRK13644         79 VGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECL  158 (274)
T ss_pred             eEEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            589999864 2444455554432110                   0                       11258999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||||++      +..+++.|+++++ .|.|||++|||++.+          . .||++++|++ ++...|+++++
T Consensus       159 lLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~~  222 (274)
T PRK13644        159 IFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEEL----------H-DADRIIVMDRGKIVLEGEPENV  222 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------h-hCCEEEEEECCEEEEECCHHHH
Confidence            9999988      4578899999876 699999999999988          5 5999999999 88888877653

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.95  E-value=4.2e-28  Score=204.78  Aligned_cols=153  Identities=15%  Similarity=0.104  Sum_probs=114.5

Q ss_pred             ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh-
Q 026304            9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD-   70 (240)
Q Consensus         9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~-   70 (240)
                      +||+++|++++|         ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++... 
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            589999999876         7899999999999999999999999999 9999972        23443332221111 


Q ss_pred             -cccCCCeEEEccCceecceecCcchhHHH------------h-------h-----------------------chhhhc
Q 026304           71 -TRYAIDSVVTHDGAKLPCWALPELTSFRQ------------K-------L-----------------------GDDAYA  107 (240)
Q Consensus        71 -~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------~-------~-----------------------~~~l~~  107 (240)
                       .+....+|++|+..+++.+++.++..+..            .       +                       ...++.
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~  163 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG  163 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence             11223589999887777666665543210            0       0                       112588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      +|++||||||++      ...+.++|++++++.|.|||++|||++++          .. ||++++|++ ++.
T Consensus       164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~----------~~-~d~i~~l~~g~i~  225 (228)
T PRK10584        164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLA----------AR-CDRRLRLVNGQLQ  225 (228)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------Hh-CCEEEEEECCEEE
Confidence            999999999988      45788999998764589999999999987          54 999999987 654

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.1e-28  Score=213.61  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=119.1

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccc--h
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSS--K   69 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~--~   69 (240)
                      .++++|+++.|          |+|+||+|++||+++|+||||||||||+ ++|+|+        .++|.++......  .
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLI-QNINALLKPTTGTVTVDDITITHKTKDKYI   80 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence            48899999887          6799999999999999999999999999 999997        2344444321110  1


Q ss_pred             hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304           70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD  104 (240)
Q Consensus        70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~  104 (240)
                      .......+|+||++  .+++ .++.+++.+...                   +                        +..
T Consensus        81 ~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lara  159 (286)
T PRK13646         81 RPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSI  159 (286)
T ss_pred             HHHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            11122358999975  3443 245444332100                   0                        112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++||||||++      +..+.++++++.++.|.|||++|||++++          ..+|||+++|++ ++...|+
T Consensus       160 L~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~----------~~~~dri~~l~~G~i~~~g~  229 (286)
T PRK13646        160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEV----------ARYADEVIVMKEGSIVSQTS  229 (286)
T ss_pred             HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECC
Confidence            589999999999988      45788999998764689999999999999          899999999999 8888888


Q ss_pred             cce
Q 026304          178 RAF  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ++.
T Consensus       230 ~~~  232 (286)
T PRK13646        230 PKE  232 (286)
T ss_pred             HHH
Confidence            764

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.95  E-value=2.2e-28  Score=204.34  Aligned_cols=148  Identities=21%  Similarity=0.159  Sum_probs=112.1

Q ss_pred             EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcccCC
Q 026304           11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~~~~   75 (240)
                      ++++|+++.|      ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++.. ......
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   79 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLL-KLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK   79 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence            4678888887      7899999999999999999999999999 9999972        2333332221111 111123


Q ss_pred             CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll  113 (240)
                      .+|++|+..+++..++.++..+...                   +                       ...++.+|++|+
T Consensus        80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  159 (214)
T cd03292          80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI  159 (214)
T ss_pred             eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence            5899998888777677665543210                   0                       112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ||||++      +..+.+.|+++.+ +|.|||++|||++++          ..+||++++|++
T Consensus       160 lDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~~~----------~~~~d~i~~l~~  211 (214)
T cd03292         160 ADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELV----------DTTRHRVIALER  211 (214)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence            999988      4578899999876 589999999999999          889999999975

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.95  E-value=1.3e-28  Score=220.94  Aligned_cols=150  Identities=23%  Similarity=0.165  Sum_probs=121.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--cccCCCeEEEccCceeccee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRYAIDSVVTHDGAKLPCWA   90 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~~~~~~v~q~~~~~~~~~   90 (240)
                      ++|+||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++...  .+....+|++|...+++.+|
T Consensus         9 l~~vs~~i~~Gei~~l~G~sGsGKSTLL-r~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T   87 (363)
T TIGR01186         9 VNDADLAIAKGEIFVIMGLSGSGKSTTV-RMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT   87 (363)
T ss_pred             EEeeEEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence            8999999999999999999999999999 999997        356666654433221  11234689999999999999


Q ss_pred             cCcchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHH
Q 026304           91 LPELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FED  122 (240)
Q Consensus        91 ~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~  122 (240)
                      +.+|..+...+                                          ...++.+|++||||||++      +..
T Consensus        88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~  167 (363)
T TIGR01186        88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDS  167 (363)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            98876543210                                          112589999999999988      457


Q ss_pred             HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +.+.+.++.++.|+|||++|||++++          ..+||||++|++ ++..+|+++++
T Consensus       168 l~~~l~~l~~~~~~Tii~vTHd~~ea----------~~~~drI~vl~~G~iv~~g~~~ei  217 (363)
T TIGR01186       168 MQDELKKLQATLQKTIVFITHDLDEA----------IRIGDRIVIMKAGEIVQVGTPDEI  217 (363)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEeeCCHHHH
Confidence            88899988764689999999999999          999999999999 99999987654

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.6e-28  Score=228.41  Aligned_cols=161  Identities=15%  Similarity=0.099  Sum_probs=122.1

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc------hhcc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS------KDTR   72 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~------~~~~   72 (240)
                      .+||+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+..    .|. +......      ...+
T Consensus         3 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~G~-i~~~g~~~~~~~~~~~~   80 (506)
T PRK13549          3 EYLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLM-KVLSGVYPHGTYEGE-IIFEGEELQASNIRDTE   80 (506)
T ss_pred             CceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeE-EEECCEECCCCCHHHHH
Confidence            3589999999998     8999999999999999999999999999 99999743    232 2211100      0111


Q ss_pred             cCCCeEEEccCceecceecCcchhHH---------------Hh-------h-----------------------chhhhc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFR---------------QK-------L-----------------------GDDAYA  107 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~---------------~~-------~-----------------------~~~l~~  107 (240)
                      ....+|++|+..+++.+++.+++.+.               ..       +                       +..++.
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~  160 (506)
T PRK13549         81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNK  160 (506)
T ss_pred             HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhc
Confidence            12358999987776666655433221               00       0                       112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++||||||++      +..++++|.++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~  229 (506)
T PRK13549        161 QARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLNEV----------KAISDTICVIRDGRHIGTRPAAG  229 (506)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHH----------HHhcCEEEEEECCEEeeeccccc
Confidence            999999999988      4578899999876 689999999999999          899999999999 8887777654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       230 ~  230 (506)
T PRK13549        230 M  230 (506)
T ss_pred             C
Confidence            3

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.7e-28  Score=209.43  Aligned_cols=158  Identities=18%  Similarity=0.163  Sum_probs=118.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.  ..|      .++...+..  ......
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~~~i   78 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLL-KCFARLLTPQSGTVFLGDKPISMLSSR--QLARRL   78 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCCcEEEECCEEhHHCCHH--HHhhhe
Confidence            68999999998     8999999999999999999999999999 9999972  223      222111111  111235


Q ss_pred             eEEEccCceecceecCcchhHH----------------Hh-------h-----------------------chhhhccCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFR----------------QK-------L-----------------------GDDAYAKLD  110 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~----------------~~-------~-----------------------~~~l~~~p~  110 (240)
                      +|++|+..+++.+++.++..+.                ..       +                       ...++.+|+
T Consensus        79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  158 (255)
T PRK11231         79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTP  158 (255)
T ss_pred             EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            8899987666555554443221                00       0                       112589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      +..+.++|+++++ .|.|||++|||++++          .++||++++|++ ++...|+++.+
T Consensus       159 llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~  225 (255)
T PRK11231        159 VVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLNQA----------SRYCDHLVVLANGHVMAQGTPEEV  225 (255)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHH----------HHhcCEEEEEECCeEEEEcCHHHh
Confidence            999999987      4578899988876 589999999999999          899999999998 88777766543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.4e-28  Score=206.88  Aligned_cols=156  Identities=13%  Similarity=0.094  Sum_probs=118.7

Q ss_pred             eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304           10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      ||+++|++++|   ..++||++.+|++++|+||||||||||+ ++|+|+.        ++|+++.....   .+ ...+|
T Consensus         1 ~l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~-~~i~~   75 (232)
T PRK10771          1 MLKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLL-NLIAGFLTPASGSLTLNGQDHTTTPP---SR-RPVSM   75 (232)
T ss_pred             CeEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCeecCcCCh---hh-ccEEE
Confidence            58999999999   5699999999999999999999999999 9999972        23333221111   11 23589


Q ss_pred             EEccCceecceecCcchhHH-------------------Hhh-----------------------chhhhccCcEEEEcC
Q 026304           79 VTHDGAKLPCWALPELTSFR-------------------QKL-----------------------GDDAYAKLDVIGIDE  116 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~~~~-------------------~~~-----------------------~~~l~~~p~lllLDE  116 (240)
                      ++|+..+++.+++.++..+.                   ..+                       ...++.+|++|+|||
T Consensus        76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  155 (232)
T PRK10771         76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE  155 (232)
T ss_pred             EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99987777665555443221                   000                       112589999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++      +..+.++|+++.++.|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~g~i~~~g~~~~  216 (232)
T PRK10771        156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDA----------ARIAPRSLVVADGRIAWDGPTDE  216 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEeCCHHH
Confidence            988      45788999988764589999999999999          899999999998 8887777654

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.95  E-value=3.2e-28  Score=204.43  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=112.7

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh--
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD--   70 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~--   70 (240)
                      +|+++|++++|         ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+....  
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~   79 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLL-HLLGGLDNPTSGEVLFNGQSLSKLSSNERAK   79 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEhhhcCHhHHHH
Confidence            36788998876         7899999999999999999999999999 9999972        34444333222111  


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhcc
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAK  108 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~  108 (240)
                      .+....+|++|+..+++.+++.++..+...                   +                       ...++.+
T Consensus        80 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  159 (221)
T TIGR02211        80 LRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQ  159 (221)
T ss_pred             HHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence            111235899999877777677665543110                   0                       1125889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                      |++||||||++      +..+.+.|++++++.+.|||++|||++++          .. ||++++|++ ++
T Consensus       160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~----------~~-~d~v~~l~~G~i  219 (221)
T TIGR02211       160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA----------KK-LDRVLEMKDGQL  219 (221)
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------hh-cCEEEEEeCCEe
Confidence            99999999988      45788999988764589999999999988          54 799999987 54

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.95  E-value=4.1e-28  Score=206.46  Aligned_cols=157  Identities=17%  Similarity=0.141  Sum_probs=114.7

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch----hCCc------eEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES----DNGR------NIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~----~~g~------~i~~~~~~~~~~~~~   75 (240)
                      |+++|++++|     ++|+||+|++|++++|+||||||||||+ ++|+|+.    ..|.      ++...+.....+ ..
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~-~~   78 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLS-KTIAGHPSYEVTSGTILFKGQDLLELEPDERAR-AG   78 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCcceEEECCEecCCCCHHHhhc-cc
Confidence            4789999998     8999999999999999999999999999 9999972    2232      221111111111 12


Q ss_pred             CeEEEccCceecceecCcchhHH-------------------Hh----------------------h----------chh
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR-------------------QK----------------------L----------GDD  104 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~-------------------~~----------------------~----------~~~  104 (240)
                      .+|++|++.+++.+++.++..+.                   ..                      +          ...
T Consensus        79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a  158 (243)
T TIGR01978        79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM  158 (243)
T ss_pred             eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence            47888887666554433222110                   00                      0          112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeeccC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCELCG  176 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~~g  176 (240)
                      ++.+|++||||||++      +..+.++|+++++ .|.|||++|||++++          ..+ ||++++|++ ++...|
T Consensus       159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~~~----------~~~~~d~i~~l~~G~i~~~g  227 (243)
T TIGR01978       159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQRLL----------NYIKPDYVHVLLDGRIVKSG  227 (243)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHHHH----------HhhcCCeEEEEeCCEEEEec
Confidence            588999999999988      4578899999876 689999999999999          888 899999998 887777


Q ss_pred             Ccce
Q 026304          177 KRAF  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +++.
T Consensus       228 ~~~~  231 (243)
T TIGR01978       228 DVEL  231 (243)
T ss_pred             CHHH
Confidence            7653

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.7e-28  Score=206.30  Aligned_cols=160  Identities=17%  Similarity=0.109  Sum_probs=121.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEee---ccc-hhcc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMI---KSS-KDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~---~~~-~~~~   72 (240)
                      +|+++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|+++...   ... ....
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL   80 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence            68999999998     9999999999999999999999999999 9999972        233332100   000 0111


Q ss_pred             cCCCeEEEccCceecceecCcchhHH-------------Hh-------h-----------------------chhhhccC
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFR-------------QK-------L-----------------------GDDAYAKL  109 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~-------------~~-------~-----------------------~~~l~~~p  109 (240)
                      ....+|++|+..+++.+++.++..+.             ..       +                       ...++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (242)
T PRK11124         81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEP  160 (242)
T ss_pred             HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            12358999988877776776654310             00       0                       11258899


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|+||||++      +..+.++|+++.+ .|.|+|++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       161 ~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~----------~~~~d~i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        161 QVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVEVA----------RKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             CEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeCCHHHh
Confidence            9999999987      4578889988876 689999999999999          889999999998 88777776544

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.8e-28  Score=207.33  Aligned_cols=159  Identities=14%  Similarity=0.060  Sum_probs=118.5

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h----CCceEEeeccc-------
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D----NGRNIAMIKSS-------   68 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~----~g~~i~~~~~~-------   68 (240)
                      .+||+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+.   .    .|. +......       
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~-i~~~g~~~~~~~~~   80 (252)
T PRK14239          3 EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLL-RSINRMNDLNPEVTITGS-IVYNGHNIYSPRTD   80 (252)
T ss_pred             CceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhcccccCCCCCccce-EEECCEECcCcccc
Confidence            3589999999998     8999999999999999999999999999 9999962   2    343 2211100       


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------  101 (240)
                      ........+|++|+..+++ .++.++..+..                    .+                           
T Consensus        81 ~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  159 (252)
T PRK14239         81 TVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI  159 (252)
T ss_pred             hHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence            0111123589999877665 45554432210                    00                           


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ...++.+|++||||||++      ...+.++|+++.+  +.|||++|||++++          ..+|||+++|++ ++..
T Consensus       160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i~~  227 (252)
T PRK14239        160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQA----------SRISDRTGFFLDGDLIE  227 (252)
T ss_pred             HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCHHHH----------HHhCCEEEEEECCEEEE
Confidence            112588999999999988      4578888988854  58999999999999          899999999999 8887


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|+++.+
T Consensus       228 ~g~~~~~  234 (252)
T PRK14239        228 YNDTKQM  234 (252)
T ss_pred             eCCHHHH
Confidence            7776543

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.95  E-value=1.7e-28  Score=215.73  Aligned_cols=147  Identities=17%  Similarity=0.147  Sum_probs=116.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALP   92 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~   92 (240)
                      ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...+  ...+ ...+|++|+..+++.+++.
T Consensus         9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~-~~i~~~~q~~~~~~~~tv~   84 (302)
T TIGR01188         9 VDGVNFKVREGEVFGFLGPNGAGKTTTI-RMLTTLLRPTSGTARVAGYDVVREP--RKVR-RSIGIVPQYASVDEDLTGR   84 (302)
T ss_pred             EeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEcccCH--HHHH-hhcEEecCCCCCCCCCcHH
Confidence            8999999999999999999999999999 9999972        3343332211  1112 2358999998888888887


Q ss_pred             cchhHHHhh------------------------------------------chhhhccCcEEEEcCccC------hHHHH
Q 026304           93 ELTSFRQKL------------------------------------------GDDAYAKLDVIGIDEAQF------FEDLY  124 (240)
Q Consensus        93 ~~~~~~~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~i~  124 (240)
                      +++.+...+                                          +..++.+|++||||||++      +..++
T Consensus        85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  164 (302)
T TIGR01188        85 ENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIW  164 (302)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH
Confidence            765542110                                          112589999999999988      45789


Q ss_pred             HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          125 EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       125 ~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ++|+++++ .|.|||++||+++++          ..+||++++|++ ++...|+++.+.
T Consensus       165 ~~l~~~~~-~g~tvi~~sH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~l~  212 (302)
T TIGR01188       165 DYIRALKE-EGVTILLTTHYMEEA----------DKLCDRIAIIDHGRIIAEGTPEELK  212 (302)
T ss_pred             HHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEECCHHHHH
Confidence            99999986 599999999999999          899999999999 888888876653

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.95  E-value=4.9e-28  Score=208.18  Aligned_cols=163  Identities=14%  Similarity=0.048  Sum_probs=117.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCce-----EEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRN-----IAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~-----i~~~~~~~   69 (240)
                      .++|+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|++     +...+...
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~   82 (258)
T PRK11701          4 QPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-NALSARLAPDAGEVHYRMRDGQLRDLYALSEAE   82 (258)
T ss_pred             CceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence            3489999999998     8999999999999999999999999999 9999972        23333     22221111


Q ss_pred             hc--ccCCCeEEEccCc--eecceecCcchh--------------------HHHhh------------------------
Q 026304           70 DT--RYAIDSVVTHDGA--KLPCWALPELTS--------------------FRQKL------------------------  101 (240)
Q Consensus        70 ~~--~~~~~~~v~q~~~--~~~~~~~~~~~~--------------------~~~~~------------------------  101 (240)
                      ..  +....+|++|+..  ++...++.++..                    +...+                        
T Consensus        83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~l  162 (258)
T PRK11701         83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHH
Confidence            10  1223589998863  233222221110                    00000                        


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +..++.+|++||||||++      ...+.+.|++++++.|.|||++|||++++          ..+||++++|++ ++..
T Consensus       163 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~----------~~~~d~i~~l~~g~i~~  232 (258)
T PRK11701        163 ARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA----------RLLAHRLLVMKQGRVVE  232 (258)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH----------HHhcCEEEEEECCEEEE
Confidence            122588999999999988      45788888888764589999999999999          889999999999 8888


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|+++.+
T Consensus       233 ~~~~~~~  239 (258)
T PRK11701        233 SGLTDQV  239 (258)
T ss_pred             eCCHHHH
Confidence            7776543

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.95  E-value=1.8e-28  Score=212.31  Aligned_cols=159  Identities=23%  Similarity=0.186  Sum_probs=120.8

Q ss_pred             EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchh--cccCCC
Q 026304           12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKD--TRYAID   76 (240)
Q Consensus        12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~--~~~~~~   76 (240)
                      .++|+++.|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++...  .+....
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i  104 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLL-RCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI  104 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence            566888887     8999999999999999999999999999 9999973        33444332221111  112235


Q ss_pred             eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL  114 (240)
                      +|++|+..+++.+++.++..+...                   +                       +..++.+|++|||
T Consensus       105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illL  184 (269)
T cd03294         105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLM  184 (269)
T ss_pred             EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            899999888877777666543210                   0                       1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +..+.++|.++.++.|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~  248 (269)
T cd03294         185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEA----------LRLGDRIAIMKDGRLVQVGTPEEI  248 (269)
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEeCCHHHH
Confidence            99988      45788999988764589999999999999          899999999998 88777776543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=3e-28  Score=227.78  Aligned_cols=159  Identities=15%  Similarity=0.131  Sum_probs=121.0

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++|++++|     ++|+||+|.+|++++|+||||||||||+ ++|+|+.        ++|.++...++.. .+...
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~~~~-~~~~~   80 (501)
T PRK10762          3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMM-KVLTGIYTRDAGSILYLGKEVTFNGPKS-SQEAG   80 (501)
T ss_pred             ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHH-HHhCC
Confidence            489999999998     8999999999999999999999999999 9999973        2333332111111 11123


Q ss_pred             CeEEEccCceecceecCcchhHH----------------Hh-------h-----------------------chhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR----------------QK-------L-----------------------GDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~----------------~~-------~-----------------------~~~l~~~p  109 (240)
                      .+|++|+..+++.+++.++..+.                ..       +                       +..++.+|
T Consensus        81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p  160 (501)
T PRK10762         81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFES  160 (501)
T ss_pred             EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCC
Confidence            58999987776666665443220                00       0                       11258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ++|||||||+      +..++++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  227 (501)
T PRK10762        161 KVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLKEI----------FEICDDVTVFRDGQFIAEREVAD  227 (501)
T ss_pred             CEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEeCCEEEEecCcCc
Confidence            9999999988      4578899999876 689999999999999          899999999998 8877666543

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.95  E-value=5.3e-28  Score=209.11  Aligned_cols=160  Identities=13%  Similarity=0.091  Sum_probs=115.6

Q ss_pred             ceEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeec
Q 026304            9 AAVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIK   66 (240)
Q Consensus         9 ~~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~   66 (240)
                      +||+++||+++|              ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++....
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~   81 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGELLIDDHPLHFGD   81 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCc
Confidence            589999999866              5799999999999999999999999999 9999972        2333332111


Q ss_pred             cchhcccCCCeEEEccCc--eecceecCcchhH--------------------HHhh-----------------------
Q 026304           67 SSKDTRYAIDSVVTHDGA--KLPCWALPELTSF--------------------RQKL-----------------------  101 (240)
Q Consensus        67 ~~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~~~~-----------------------  101 (240)
                        ...+....+|++|+..  +++.+++.++..+                    ...+                       
T Consensus        82 --~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~  159 (267)
T PRK15112         82 --YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG  159 (267)
T ss_pred             --hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHH
Confidence              1111223588998753  2332222211110                    0000                       


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++||||||++      +..+.++|.++.++.|.|||++||+++++          ..+||++++|++ ++.
T Consensus       160 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~----------~~~~d~i~~l~~G~i~  229 (267)
T PRK15112        160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM----------KHISDQVLVMHQGEVV  229 (267)
T ss_pred             HHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH----------HHhcCEEEEEECCEEE
Confidence             112588999999999988      45788899998764589999999999999          889999999998 887


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+++.+
T Consensus       230 ~~~~~~~~  237 (267)
T PRK15112        230 ERGSTADV  237 (267)
T ss_pred             ecCCHHHH
Confidence            77766543

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.95  E-value=5.3e-28  Score=206.63  Aligned_cols=156  Identities=14%  Similarity=0.134  Sum_probs=117.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------chh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SKD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~~   70 (240)
                      ||+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|. +.....       ...
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~~~~~~G~-i~~~g~~~~~~~~~~~   78 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLL-RSLNRMNDLVPGVRIEGK-VLFDGQDIYDKKIDVV   78 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCceE-EEECCEEccccccchH
Confidence            58999999998     8999999999999999999999999999 99999732       332 221110       011


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHHh----------------------h-------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQK----------------------L-------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~  103 (240)
                      ......+|++|+..+++ .++.++..+...                      +                         +.
T Consensus        79 ~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar  157 (247)
T TIGR00972        79 ELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR  157 (247)
T ss_pred             HHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence            11223589999877666 555544322100                      0                         11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++||||||++      +..++++|+++++  +.|||++|||++.+          ..+||++++|++ ++...|
T Consensus       158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~~  225 (247)
T TIGR00972       158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQQA----------ARISDRTAFFYDGELVEYG  225 (247)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHHHH----------HHhCCEEEEEECCEEEEeC
Confidence            2588999999999988      4578899998876  38999999999999          899999999999 887777


Q ss_pred             Ccce
Q 026304          177 KRAF  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +++.
T Consensus       226 ~~~~  229 (247)
T TIGR00972       226 PTEQ  229 (247)
T ss_pred             CHHH
Confidence            7654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.95  E-value=3.8e-28  Score=206.95  Aligned_cols=158  Identities=21%  Similarity=0.159  Sum_probs=118.6

Q ss_pred             EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ++++|++++|      ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...++. ..+ ...
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~~i   77 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEPTSGEIFIDGEDIREQDPV-ELR-RKI   77 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCeEcCcCChH-Hhh-cce
Confidence            4678888766      7899999999999999999999999999 9999972        334333222111 112 235


Q ss_pred             eEEEccCceecceecCcchhHHH-------------------h--h-----------------------chhhhccCcEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ-------------------K--L-----------------------GDDAYAKLDVI  112 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~-------------------~--~-----------------------~~~l~~~p~ll  112 (240)
                      +|++|++.+++.+++.++..+..                   .  +                       ...++.+|++|
T Consensus        78 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  157 (242)
T cd03295          78 GYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLL  157 (242)
T ss_pred             EEEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            89999887777666655543210                   0  0                       11158999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||++      ...+.+.|++++++.|.|||++||+++++          ..+||++++|++ ++...|+++.+
T Consensus       158 llDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~  223 (242)
T cd03295         158 LMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEA----------FRLADRIAIMKNGEIVQVGTPDEI  223 (242)
T ss_pred             EecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEecCHHHH
Confidence            9999988      45788899988764589999999999998          899999999999 88777766543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.95  E-value=6.1e-28  Score=201.95  Aligned_cols=151  Identities=15%  Similarity=0.106  Sum_probs=116.2

Q ss_pred             EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304           11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      ++++|++++|   +.++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+   . .....+|+
T Consensus         1 ~~~~~l~~~~~~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~---~-~~~~i~~v   75 (213)
T TIGR01277         1 LALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLL-NLIAGFIEPASGSIKVNDQSHTGLA---P-YQRPVSML   75 (213)
T ss_pred             CeEEeeeEEeCCcceeeEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEcccCC---h-hccceEEE
Confidence            4689999999   7899999999999999999999999999 9999972        2333332111   1 12235899


Q ss_pred             EccCceecceecCcchhHHH------------hh------------------------------chhhhccCcEEEEcCc
Q 026304           80 THDGAKLPCWALPELTSFRQ------------KL------------------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~~------------~~------------------------------~~~l~~~p~lllLDEP  117 (240)
                      +|++.+++.+++.++..+..            ..                              +..++.+|++++||||
T Consensus        76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  155 (213)
T TIGR01277        76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP  155 (213)
T ss_pred             eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            99988777667665543210            00                              1125889999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      ++      +..+.++|+++.++.+.|||++||+++++          ..+||++++|++ ++...|
T Consensus       156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~----------~~~~d~v~~l~~g~i~~~~  211 (213)
T TIGR01277       156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDA----------RAIASQIAVVSQGKIKVVS  211 (213)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HhhcCeEEEEECCeEEEec
Confidence            88      45788999998764589999999999999          889999999988 776554

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.6e-28  Score=207.90  Aligned_cols=161  Identities=15%  Similarity=0.141  Sum_probs=119.3

Q ss_pred             CCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc------
Q 026304            6 LKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS------   67 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~------   67 (240)
                      +..+||+++|+++.|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|. +.....      
T Consensus         8 ~~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~p~~~~~G~-i~~~g~~~~~~~   85 (259)
T PRK14274          8 MKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFI-KTLNLMIQMVPNVKLTGE-MNYNGSNILKGK   85 (259)
T ss_pred             cCCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCceE-EEECCEEccccc
Confidence            345689999999998     8999999999999999999999999999 99999642       232 211110      


Q ss_pred             -chhcccCCCeEEEccCceecceecCcchhHH--------------------Hhh-------------------------
Q 026304           68 -SKDTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL-------------------------  101 (240)
Q Consensus        68 -~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~-------------------------  101 (240)
                       .........+|++|+..+++. ++.++..+.                    ..+                         
T Consensus        86 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv  164 (259)
T PRK14274         86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRL  164 (259)
T ss_pred             cCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHH
Confidence             011112235899998766553 443332110                    000                         


Q ss_pred             --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                        ...++.+|++|+||||++      +..+.+.|+++.+  +.|||++|||++.+          ..+|||+++|++ ++
T Consensus       165 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~----------~~~~d~i~~l~~G~i  232 (259)
T PRK14274        165 CIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNMQQA----------ARVSDQTAFFYMGEL  232 (259)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHH----------HHhCCEEEEEECCEE
Confidence              112588999999999988      4578888988854  68999999999999          899999999999 88


Q ss_pred             eccCCccee
Q 026304          173 ELCGKRAFF  181 (240)
Q Consensus       173 ~~~g~~~~~  181 (240)
                      ...|+++.+
T Consensus       233 ~~~g~~~~~  241 (259)
T PRK14274        233 VECNDTNKM  241 (259)
T ss_pred             EEECCHHHH
Confidence            888887654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=5.7e-28  Score=206.78  Aligned_cols=159  Identities=14%  Similarity=0.074  Sum_probs=117.6

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h----CCc------eEEeeccchh
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D----NGR------NIAMIKSSKD   70 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~----~g~------~i~~~~~~~~   70 (240)
                      +||+++|+++.|     ++++||++++|++++|+||||||||||+ ++|+|+.   .    .|.      ++...+....
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   80 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFL-RLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD   80 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHH-HHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence            589999999998     8999999999999999999999999999 9998851   1    232      2221110011


Q ss_pred             cccCCCeEEEccCceecceecCcchhHH--------------------Hhh---------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL---------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~---------------------------~~  103 (240)
                      ......+|++|+..+++ .++.++..+.                    ..+                           ..
T Consensus        81 ~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  159 (250)
T PRK14245         81 ELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR  159 (250)
T ss_pred             HHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence            11223589999876654 3444333210                    000                           11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++||||||++      +..+.++|+++.  .+.|||++|||++++          ..+|||+++|++ ++...|
T Consensus       160 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~~~~----------~~~~d~v~~l~~G~~~~~~  227 (250)
T PRK14245        160 AMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIVTHNMQQA----------ARVSDKTAFFYMGEMVEYD  227 (250)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHH----------HhhCCEEEEEECCEEEEEC
Confidence            1588999999999988      457889999884  378999999999999          899999999999 888888


Q ss_pred             Cccee
Q 026304          177 KRAFF  181 (240)
Q Consensus       177 ~~~~~  181 (240)
                      +++.+
T Consensus       228 ~~~~~  232 (250)
T PRK14245        228 DTKKI  232 (250)
T ss_pred             CHHHH
Confidence            87654

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.5e-28  Score=211.66  Aligned_cols=159  Identities=14%  Similarity=0.077  Sum_probs=119.3

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeecc--ch
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKS--SK   69 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~--~~   69 (240)
                      +|+++|+++.|          ++|+||++++||+++|+||||||||||+ ++|+|+        .++|+++.....  ..
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~   80 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLM-QHFNALLKPSSGTITIAGYHITPETGNKNL   80 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEECccccccchH
Confidence            58899999877          7899999999999999999999999999 999997        234544432110  01


Q ss_pred             hcccCCCeEEEccC--ceecceecCcchhHHHh-------------------h------------------------chh
Q 026304           70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK-------------------L------------------------GDD  104 (240)
Q Consensus        70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~-------------------~------------------------~~~  104 (240)
                      .......+|++|++  .++ ..++.+++.+...                   +                        +..
T Consensus        81 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~lara  159 (287)
T PRK13641         81 KKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGV  159 (287)
T ss_pred             HHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHH
Confidence            11122358999985  333 3455554432110                   0                        112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++||||||++      +..+.++|+++.+ .|.|||++|||++++          ..+||++++|++ ++...|+
T Consensus       160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~~~----------~~~~d~v~~l~~G~i~~~g~  228 (287)
T PRK13641        160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMDDV----------AEYADDVLVLEHGKLIKHAS  228 (287)
T ss_pred             HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCC
Confidence            589999999999988      4578899999876 699999999999999          899999999999 8888888


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      ++.+
T Consensus       229 ~~~~  232 (287)
T PRK13641        229 PKEI  232 (287)
T ss_pred             HHHH
Confidence            7653

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=4.4e-28  Score=209.74  Aligned_cols=161  Identities=16%  Similarity=0.077  Sum_probs=118.4

Q ss_pred             CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304            7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT   71 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~   71 (240)
                      .+++|+++|++++|       ++|+||+|++||+++|+||||||||||+ ++|+|+.        ++|.++...+. ...
T Consensus         4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~~~~~~~-~~~   81 (269)
T PRK13648          4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIA-KLMIGIEKVKSGEIFYNNQAITDDNF-EKL   81 (269)
T ss_pred             CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCcCCH-HHH
Confidence            46689999999988       7899999999999999999999999999 9999972        23333321111 111


Q ss_pred             ccCCCeEEEccCc-eecceecCcchhHH-------------------Hhh-----------------------chhhhcc
Q 026304           72 RYAIDSVVTHDGA-KLPCWALPELTSFR-------------------QKL-----------------------GDDAYAK  108 (240)
Q Consensus        72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~-------------------~~~-----------------------~~~l~~~  108 (240)
                      + ...+|++|++. .++..++.++..+.                   ..+                       ...++.+
T Consensus        82 ~-~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  160 (269)
T PRK13648         82 R-KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALN  160 (269)
T ss_pred             H-hheeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            2 23589999863 34433433222110                   000                       1125899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++||||||++      ...+++.|+++.++.|.|||++||+++++          .. |||+++|++ ++...|+++.+
T Consensus       161 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~----------~~-~d~i~~l~~G~i~~~g~~~~~  229 (269)
T PRK13648        161 PSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEA----------ME-ADHVIVMNKGTVYKEGTPTEI  229 (269)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHH----------hc-CCEEEEEECCEEEEecCHHHH
Confidence            99999999988      45788899888764589999999999998          65 999999999 88888887654

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.95  E-value=8.7e-28  Score=202.27  Aligned_cols=156  Identities=15%  Similarity=0.097  Sum_probs=117.2

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccch-hcccCCCeEEEcc
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSK-DTRYAIDSVVTHD   82 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~-~~~~~~~~~v~q~   82 (240)
                      |+++|++++|     ++++||++.+||+++|+||||||||||+ ++|+|+.  ..|. +....... .......+|++|+
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~-i~~~~~~~~~~~~~~~~~~~q~   78 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLL-KMITGILRPTSGE-IIFDGHPWTRKDLHKIGSLIES   78 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceE-EEECCEeccccccccEEEEcCC
Confidence            4688999987     9999999999999999999999999999 9999972  2232 21111000 0111235788988


Q ss_pred             CceecceecCcchhHHHh---------------h-----------------------chhhhccCcEEEEcCccC-----
Q 026304           83 GAKLPCWALPELTSFRQK---------------L-----------------------GDDAYAKLDVIGIDEAQF-----  119 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~l~~~p~lllLDEP~~-----  119 (240)
                      ..+++..++.++..+...               +                       ...++.+|++|+||||++     
T Consensus        79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~  158 (223)
T TIGR03740        79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPI  158 (223)
T ss_pred             CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHH
Confidence            777776666655433111               0                       112588999999999988     


Q ss_pred             -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                       +..+.++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|++.
T Consensus       159 ~~~~l~~~L~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~g~i~~~~~~~  209 (223)
T TIGR03740       159 GIQELRELIRSFPE-QGITVILSSHILSEV----------QQLADHIGIISEGVLGYQGKIN  209 (223)
T ss_pred             HHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HHhcCEEEEEeCCEEEEecChh
Confidence             4578899999876 689999999999999          899999999998 877777653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=9.3e-28  Score=205.91  Aligned_cols=158  Identities=15%  Similarity=0.071  Sum_probs=118.1

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~   69 (240)
                      ++|+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|. +.....       ..
T Consensus         6 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~   83 (254)
T PRK14273          6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFL-RTLNRMNDLVEGIKIEGN-VIYEGKNIYSNNFDI   83 (254)
T ss_pred             ceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCcCCCCceE-EEECCEecccccccH
Confidence            489999999998     8999999999999999999999999999 99999742       332 221110       01


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------------~  102 (240)
                      .......+|++|+..++. .++.+++.+..             .       +                           +
T Consensus        84 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la  162 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA  162 (254)
T ss_pred             HHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence            111223589999876653 45544332210             0       0                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      ...++++|+++++  +.|||++|||++++          ..+|||+++|++ ++...
T Consensus       163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~~~~----------~~~~d~i~~l~~G~i~~~  230 (254)
T PRK14273        163 RTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNMQQA----------GRISDRTAFFLNGCIEEE  230 (254)
T ss_pred             HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEe
Confidence            12588999999999988      4578899999853  68999999999999          899999999999 88877


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |++..+
T Consensus       231 g~~~~~  236 (254)
T PRK14273        231 SSTDEL  236 (254)
T ss_pred             CCHHHH
Confidence            876543

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=7.4e-28  Score=194.77  Aligned_cols=167  Identities=23%  Similarity=0.185  Sum_probs=130.9

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      +++.++++|.+|       ++|+|++|.+||+++++||||||||||| ++++|+.        ++|+.+..-       -
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLL-nl~AGf~~P~~G~i~l~~r~i~gP-------g   73 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLL-NLIAGFVTPSRGSIQLNGRRIEGP-------G   73 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHH-HHHhcCcCcccceEEECCEeccCC-------C
Confidence            478889999998       8999999999999999999999999999 9999982        233333211       1


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhhc------------------------------------------hhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKLG------------------------------------------DDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~p~l  111 (240)
                      ...++|||+..++|.+++.+|..+..++.                                          ..++-+|++
T Consensus        74 aergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~  153 (259)
T COG4525          74 AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQL  153 (259)
T ss_pred             ccceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcce
Confidence            12489999999999999999988754431                                          125889999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCcceee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFFT  182 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~~  182 (240)
                      |+||||..      ++++.++|.++.++.|+.++++|||++++          .-+|+|+++|..   +++..-+++ |.
T Consensus       154 LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEA----------lflatrLvvlsp~pgRvv~~~~~d-f~  222 (259)
T COG4525         154 LLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEA----------LFLATRLVVLSPGPGRVVERLPLD-FA  222 (259)
T ss_pred             EeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH----------HhhhheeEEecCCCceeeEecCCC-HH
Confidence            99999966      45788888888887899999999999999          999999999985   555443433 55


Q ss_pred             eeecCCCcEEEe
Q 026304          183 LRKTEETETEII  194 (240)
Q Consensus       183 ~~~~~~~~~~~~  194 (240)
                      .|+..+.+..-+
T Consensus       223 rR~aage~~RaI  234 (259)
T COG4525         223 RRYAAGEPSRAI  234 (259)
T ss_pred             HHhhcCCCcchh
Confidence            566555444433

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=207.21  Aligned_cols=159  Identities=13%  Similarity=0.085  Sum_probs=117.2

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~~   69 (240)
                      .++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.       ..|.      ++...+...
T Consensus        19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   97 (268)
T PRK14248         19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFL-RSINRMNDLIPSARSEGEILYEGLNILDSNINV   97 (268)
T ss_pred             CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence            4589999999998     8999999999999999999999999999 9999963       1232      221111111


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHH--------------------H----------hh-----------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------Q----------KL-----------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~----------~~-----------------~  102 (240)
                      .......+|++|+..+++. ++.++..+.                    .          ..                 .
T Consensus        98 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~la  176 (268)
T PRK14248         98 VNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIA  176 (268)
T ss_pred             HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHH
Confidence            1112235899998766653 443332210                    0          00                 1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      +..+.++|+++.+  +.|||++|||++++          ..+|||+++|++ ++...
T Consensus       177 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~----------~~~~d~v~~l~~G~i~~~  244 (268)
T PRK14248        177 RTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNMQQA----------LRVSDRTAFFLNGDLVEY  244 (268)
T ss_pred             HHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCHHHH----------HHhCCEEEEEECCEEEEe
Confidence            12588999999999988      4578889988854  58999999999999          899999999999 88887


Q ss_pred             CCcce
Q 026304          176 GKRAF  180 (240)
Q Consensus       176 g~~~~  180 (240)
                      |+++.
T Consensus       245 ~~~~~  249 (268)
T PRK14248        245 DQTEQ  249 (268)
T ss_pred             CCHHH
Confidence            77654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=205.15  Aligned_cols=159  Identities=15%  Similarity=0.088  Sum_probs=119.4

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~   69 (240)
                      ++|+++|+++.|     ++|+||++.+||+++|+||||||||||+ ++|+|+..       .|. +.....       ..
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~   80 (253)
T PRK14267          3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLL-RTFNRLLELNEEARVEGE-VRLFGRNIYSPDVDP   80 (253)
T ss_pred             ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceE-EEECCEEccccccCh
Confidence            379999999998     9999999999999999999999999999 99999732       342 211100       00


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH---------------------hh---------------------------
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ---------------------KL---------------------------  101 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~~---------------------------  101 (240)
                      .......+|++|+..+++..++.++..+..                     .+                           
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  160 (253)
T PRK14267         81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI  160 (253)
T ss_pred             HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence            111123589999887776666554443210                     00                           


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ...++.+|++|+||||++      ...+.+.|+++++  +.|||++|||++++          ..+||++++|++ ++..
T Consensus       161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~  228 (253)
T PRK14267        161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQA----------ARVSDYVAFLYLGKLIE  228 (253)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHHHH----------HhhCCEEEEEECCEEEE
Confidence            111588999999999987      4578889988864  58999999999999          899999999999 8887


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|+++++
T Consensus       229 ~~~~~~~  235 (253)
T PRK14267        229 VGPTRKV  235 (253)
T ss_pred             eCCHHHH
Confidence            7776543

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.95  E-value=7.2e-28  Score=216.12  Aligned_cols=154  Identities=17%  Similarity=0.117  Sum_probs=119.0

Q ss_pred             ceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc--chhcccCCCeEEE
Q 026304           15 QVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS--SKDTRYAIDSVVT   80 (240)
Q Consensus        15 ~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~--~~~~~~~~~~~v~   80 (240)
                      |++++|    + ++||++++|++++|+||||||||||| ++|+|+.        ++|+++.....  .........+|++
T Consensus         4 ~l~~~~~~~~~-~isl~i~~Gei~~l~G~nGsGKSTLl-~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~   81 (354)
T TIGR02142         4 RFSKRLGDFSL-DADFTLPGQGVTAIFGRSGSGKTTLI-RLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF   81 (354)
T ss_pred             EEEEEECCEEE-EEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence            678887    6 99999999999999999999999999 9999972        34444322111  0011122358999


Q ss_pred             ccCceecceecCcchhHHHh----------h------------------------------chhhhccCcEEEEcCccC-
Q 026304           81 HDGAKLPCWALPELTSFRQK----------L------------------------------GDDAYAKLDVIGIDEAQF-  119 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~~~~----------~------------------------------~~~l~~~p~lllLDEP~~-  119 (240)
                      |+..+++.+++.++..+...          .                              +..++.+|++||||||++ 
T Consensus        82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~  161 (354)
T TIGR02142        82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA  161 (354)
T ss_pred             cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            99988888888776654210          0                              112588999999999988 


Q ss_pred             -----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          120 -----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       120 -----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                           +..+++.|++++++.|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~  218 (354)
T TIGR02142       162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQEV----------LRLADRVVVLEDGRVAAAGPIAE  218 (354)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEeCCEEEEECCHHH
Confidence                 45789999998764589999999999999          899999999999 8888887654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.95  E-value=1.2e-27  Score=199.98  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=107.8

Q ss_pred             EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCc
Q 026304           12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGA   84 (240)
Q Consensus        12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~   84 (240)
                      +++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +..............+|++|+..
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~-i~~~g~~~~~~~~~i~~v~q~~~   78 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLL-KAILGLLKPTSGS-IRVFGKPLEKERKRIGYVPQRRS   78 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCCE-EEECCccHHHHHhheEEeccccc
Confidence            367888887     8999999999999999999999999999 9999973  2332 22211111011123578888765


Q ss_pred             eec--ceecCcchhHH-----------------------Hhh-----------------------chhhhccCcEEEEcC
Q 026304           85 KLP--CWALPELTSFR-----------------------QKL-----------------------GDDAYAKLDVIGIDE  116 (240)
Q Consensus        85 ~~~--~~~~~~~~~~~-----------------------~~~-----------------------~~~l~~~p~lllLDE  116 (240)
                      +..  ..++.++..+.                       ..+                       ...++.+|++|||||
T Consensus        79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  158 (213)
T cd03235          79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE  158 (213)
T ss_pred             cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            421  13443332110                       000                       112588999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeecc
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELC  175 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~  175 (240)
                      |++      +..+.+.|+++++ .|.|||++|||++++          ..+||++++|++.+.+.
T Consensus       159 Pt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~~~----------~~~~d~i~~l~~~~~~~  212 (213)
T cd03235         159 PFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLGLV----------LEYFDRVLLLNRTVVAS  212 (213)
T ss_pred             CcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcCEEEEEcCcEeec
Confidence            988      4578899999887 689999999999999          89999999998754433

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=7.1e-28  Score=200.33  Aligned_cols=147  Identities=22%  Similarity=0.168  Sum_probs=105.8

Q ss_pred             EcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccc--hhcccCCCeEEEcc
Q 026304           13 TNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSS--KDTRYAIDSVVTHD   82 (240)
Q Consensus        13 ~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~--~~~~~~~~~~v~q~   82 (240)
                      ++|++++|      ++++||++++|++++|+||||||||||+ ++|+|+.  ..|. +......  ...+....+|++|+
T Consensus         2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~i~~~~q~   79 (205)
T cd03226           2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLA-KILAGLIKESSGS-ILLNGKPIKAKERRKSIGYVMQD   79 (205)
T ss_pred             cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceE-EEECCEEhhhHHhhcceEEEecC
Confidence            56777766      7899999999999999999999999999 9999972  2232 2111100  01112235899998


Q ss_pred             Cc-eecceecCcchhHHH--------h-------h-----------------------chhhhccCcEEEEcCccC----
Q 026304           83 GA-KLPCWALPELTSFRQ--------K-------L-----------------------GDDAYAKLDVIGIDEAQF----  119 (240)
Q Consensus        83 ~~-~~~~~~~~~~~~~~~--------~-------~-----------------------~~~l~~~p~lllLDEP~~----  119 (240)
                      +. .+...++.++..+..        .       +                       ...++.+|++|+||||++    
T Consensus        80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  159 (205)
T cd03226          80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY  159 (205)
T ss_pred             hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence            53 222345554443211        0       0                       112588999999999988    


Q ss_pred             --hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          120 --FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                        +..+.++|+++++ .|.|||++|||++++          ..+||++++|++ ++
T Consensus       160 ~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~----------~~~~d~i~~l~~G~i  204 (205)
T cd03226         160 KNMERVGELIRELAA-QGKAVIVITHDYEFL----------AKVCDRVLLLANGAI  204 (205)
T ss_pred             HHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEE
Confidence              4578899999876 689999999999999          889999999987 54

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=2.3e-28  Score=197.55  Aligned_cols=160  Identities=18%  Similarity=0.136  Sum_probs=133.3

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCC-ceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNG-RNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g-~~i~~~~~~~~~~~~   74 (240)
                      ..|+++|+|++|     ++++||++.+||.-+|+|||||||||++ ..|+|.        .++| .++..++.....|.+
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~m-D~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G   82 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLM-DVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG   82 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeee-eeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence            579999999998     9999999999999999999999999999 999996        3455 667666665556665


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh------------------------------------c-----h---------h
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------G-----D---------D  104 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------~-----~---------~  104 (240)
                      + |-.||.+..|+.+++++|+++....                                    +     +         .
T Consensus        83 I-GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMl  161 (249)
T COG4674          83 I-GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGML  161 (249)
T ss_pred             c-CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhhee
Confidence            3 6789999999999999998775321                                    0     0         0


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++++|++|++|||.+      ....-++|+.++.  +.+|+++.|||.|+          ..+|++|-+|+. .+...|+
T Consensus       162 l~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~Fv----------r~~A~~VTVlh~G~VL~EGs  229 (249)
T COG4674         162 LAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGFV----------REIADKVTVLHEGSVLAEGS  229 (249)
T ss_pred             eccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHHH----------HHhhheeEEEeccceeeccc
Confidence            389999999999977      2367888999875  67999999999999          999999999999 8888888


Q ss_pred             cceee
Q 026304          178 RAFFT  182 (240)
Q Consensus       178 ~~~~~  182 (240)
                      .+.+.
T Consensus       230 ld~v~  234 (249)
T COG4674         230 LDEVQ  234 (249)
T ss_pred             HHHhh
Confidence            76544

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=206.12  Aligned_cols=159  Identities=16%  Similarity=0.120  Sum_probs=118.0

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc------
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS------   68 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~------   68 (240)
                      ...+|+++|+++.|     ++++||+|++|++++|+||||||||||+ ++|+|+.       ..|. +......      
T Consensus        10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~p~~G~-i~~~g~~~~~~~~   87 (260)
T PRK10744         10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLL-RTFNRMYELYPEQRAEGE-ILLDGENILTPKQ   87 (260)
T ss_pred             CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcceE-EEECCEEcccccc
Confidence            34589999999998     8999999999999999999999999999 9999974       1342 2211100      


Q ss_pred             -hhcccCCCeEEEccCceecceecCcchhHH--------------------Hhh--------------------------
Q 026304           69 -KDTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL--------------------------  101 (240)
Q Consensus        69 -~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~--------------------------  101 (240)
                       ........+|++|+..+++ .++.++..+.                    ..+                          
T Consensus        88 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~  166 (260)
T PRK10744         88 DIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC  166 (260)
T ss_pred             chHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence             0111223589999876665 4544333210                    000                          


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++||||||++      ...+.+.|+++.+  +.|||++||+++.+          ..+||++++|++ ++.
T Consensus       167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~  234 (260)
T PRK10744        167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNMQQA----------ARCSDYTAFMYLGELI  234 (260)
T ss_pred             HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEE
Confidence             112589999999999988      4578888888853  68999999999999          899999999999 887


Q ss_pred             ccCCcce
Q 026304          174 LCGKRAF  180 (240)
Q Consensus       174 ~~g~~~~  180 (240)
                      ..|+++.
T Consensus       235 ~~g~~~~  241 (260)
T PRK10744        235 EFGNTDT  241 (260)
T ss_pred             EeCCHHH
Confidence            7777654

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.95  E-value=1.4e-27  Score=202.31  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=119.4

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+.   .+ ...+
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~g~~~~~~G~i~~~g~~~~~~~~---~~-~~i~   75 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLL-RLIAGFETPTSGEILLDGKDITNLPP---HK-RPVN   75 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCCh---hh-cceE
Confidence            4688999988     8999999999999999999999999999 9999972        23333221111   12 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..++..+++.++..+...                   +                       +..++.+|++++||
T Consensus        76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD  155 (232)
T cd03300          76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD  155 (232)
T ss_pred             EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999888776677665543110                   0                       11258999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ||++      +..+.++|++++++.|.|||++||+++++          ..+||++++|++ ++...|++..
T Consensus       156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~----------~~~~d~i~~l~~G~~~~~~~~~~  217 (232)
T cd03300         156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEA----------LTMSDRIAVMNKGKIQQIGTPEE  217 (232)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEecCCHHH
Confidence            9988      45788999998764589999999999999          899999999998 8777776543

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.95  E-value=1.1e-27  Score=194.45  Aligned_cols=144  Identities=20%  Similarity=0.170  Sum_probs=110.5

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      ++++|++++|       ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++...+.. . ....
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~   77 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLA-RLILGLLRPTSGRVRLDGADISQWDPN-E-LGDH   77 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEEcccCCHH-H-HHhh
Confidence            4678888877       7899999999999999999999999999 9999972        334443322211 1 1223


Q ss_pred             CeEEEccCceecceecCcch-----hHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304           76 DSVVTHDGAKLPCWALPELT-----SFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~-----~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      .+|++|+..+++. ++.++.     .....+...++.+|++||||||++      +..+.++|+++++ +|.|||++|||
T Consensus        78 i~~~~q~~~~~~~-tv~~~lLS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~  155 (173)
T cd03246          78 VGYLPQDDELFSG-SIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHR  155 (173)
T ss_pred             eEEECCCCccccC-cHHHHCcCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            5899998877764 666653     111223556799999999999988      4578899998876 68999999999


Q ss_pred             hhhhhcccchHHHHHhhccceeeecc
Q 026304          145 GDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       145 ~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++++           .+||++++|++
T Consensus       156 ~~~~-----------~~~d~v~~l~~  170 (173)
T cd03246         156 PETL-----------ASADRILVLED  170 (173)
T ss_pred             HHHH-----------HhCCEEEEEEC
Confidence            9877           47999999976

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=7.9e-28  Score=209.62  Aligned_cols=162  Identities=15%  Similarity=0.050  Sum_probs=120.8

Q ss_pred             CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--C---CceEEeeccc-----h
Q 026304            7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--N---GRNIAMIKSS-----K   69 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~---g~~i~~~~~~-----~   69 (240)
                      ++.||+++|++++|       ++++||+|++||+++|+||||||||||+ ++|+|+..  .   |. +......     .
T Consensus         2 ~~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl-~~l~G~~~p~~g~~G~-i~i~g~~~~~~~~   79 (282)
T PRK13640          2 KDNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTIS-KLINGLLLPDDNPNSK-ITVDGITLTAKTV   79 (282)
T ss_pred             CCceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHH-HHHhcccCCCCCCCcE-EEECCEECCcCCH
Confidence            45689999999987       8899999999999999999999999999 99999732  2   32 2211111     1


Q ss_pred             hcccCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhh
Q 026304           70 DTRYAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAY  106 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~  106 (240)
                      .......+|++|++. .+...++.+++.+...                   +                       +..++
T Consensus        80 ~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~  159 (282)
T PRK13640         80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILA  159 (282)
T ss_pred             HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence            111223589999863 4445566555432110                   0                       11258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++||||||++      +..+.++|++++++.|.|||++||+++++          . +||++++|++ ++...|+++
T Consensus       160 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~  228 (282)
T PRK13640        160 VEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEA----------N-MADQVLVLDDGKLLAQGSPV  228 (282)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------H-hCCEEEEEECCEEEEeCCHH
Confidence            9999999999988      45788999988764589999999999988          5 7999999999 888888876


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      .+
T Consensus       229 ~~  230 (282)
T PRK13640        229 EI  230 (282)
T ss_pred             HH
Confidence            53

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.95  E-value=1.5e-27  Score=201.35  Aligned_cols=154  Identities=18%  Similarity=0.091  Sum_probs=113.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .++|+++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++...++. ..+ .
T Consensus         5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~   81 (225)
T PRK10247          5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDISTLKPE-IYR-Q   81 (225)
T ss_pred             CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEcCcCCHH-HHH-h
Confidence            3589999999998     8999999999999999999999999999 9999972        233333222111 112 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH-----------------hh------------------------chhhhccCcEEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ-----------------KL------------------------GDDAYAKLDVIG  113 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~-----------------~~------------------------~~~l~~~p~lll  113 (240)
                      ..+|++|+..+++. ++.++..+..                 .+                        +..++.+|++|+
T Consensus        82 ~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (225)
T PRK10247         82 QVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL  160 (225)
T ss_pred             ccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            35899998776653 5555443210                 00                        112589999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccC
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCG  176 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g  176 (240)
                      ||||++      +..+.++|.++.++.|.|||++|||++++          . .||++++|++  ..+.+|
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~----------~-~~d~i~~l~~~~~~~~~~  220 (225)
T PRK10247        161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEI----------N-HADKVITLQPHAGEMQEA  220 (225)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHH----------H-hCCEEEEEecccchHhhh
Confidence            999987      45788889888764589999999999998          5 6999999963  444444

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.7e-27  Score=204.04  Aligned_cols=157  Identities=17%  Similarity=0.157  Sum_probs=118.3

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------chh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SKD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~~   70 (240)
                      .|+++|++++|     ++|+||+|++||+++|+||||||||||+ ++|+|+..       .|. +.....       ...
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~   81 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVL-RSINRMHDLVPSARVTGK-ILLDDTDIYDRGVDPV   81 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCCCCceE-EEECCEEcccccCChH
Confidence            68999999998     9999999999999999999999999999 99999742       232 222111       111


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~  103 (240)
                      ......+|++|+..+++..++.++..+..                    .+                           +.
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar  161 (252)
T PRK14256         82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIAR  161 (252)
T ss_pred             HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHH
Confidence            11223589999877776656554432210                    00                           01


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++||||||++      +..+.+.|+++.+  +.|||++|||++++          ..+||++++|++ ++...|
T Consensus       162 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~~  229 (252)
T PRK14256        162 TIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQQA----------ARVSDYTAFFYMGDLVECG  229 (252)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHHHH----------HhhCCEEEEEECCEEEEeC
Confidence            1488999999999987      4578889998864  58999999999999          899999999998 888777


Q ss_pred             Ccce
Q 026304          177 KRAF  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +++.
T Consensus       230 ~~~~  233 (252)
T PRK14256        230 ETKK  233 (252)
T ss_pred             CHHH
Confidence            7654

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.2e-27  Score=205.48  Aligned_cols=157  Identities=17%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++...+..  .+....+
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~--~~~~~i~   78 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLL-RLLAGALRPDAGTVDLAGVDLHGLSRR--ARARRVA   78 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCCEEEECCEEcccCCHH--HHhhheE
Confidence            5789999988     9999999999999999999999999999 9999972        234433322211  1112357


Q ss_pred             EEEccCceecceecCcchhHH----------------Hh-------h-----------------------chhhhccCcE
Q 026304           78 VVTHDGAKLPCWALPELTSFR----------------QK-------L-----------------------GDDAYAKLDV  111 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~----------------~~-------~-----------------------~~~l~~~p~l  111 (240)
                      |++|+...+...++.++..+.                ..       +                       ...++.+|++
T Consensus        79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l  158 (256)
T TIGR03873        79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL  158 (256)
T ss_pred             EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            888886554444544443221                00       0                       1125889999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++||||++      ...+.++|+++.+ +|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       159 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  224 (256)
T TIGR03873       159 LLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLNLA----------ASYCDHVVVLDGGRVVAAGPPREV  224 (256)
T ss_pred             EEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhCCEEEEEeCCCEEEecCHHHh
Confidence            99999988      4578899999876 689999999999999          899999999998 88777776543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=203.52  Aligned_cols=157  Identities=15%  Similarity=0.058  Sum_probs=118.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-----chhcc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-----SKDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-----~~~~~   72 (240)
                      +|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.-       .|. +.....     ....+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~   80 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLL-RVFNRLIELYPEARVSGE-VYLDGQDIFKMDVIEL   80 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCCCCceE-EEECCEECCcCCHHHH
Confidence            69999999998     8999999999999999999999999999 99999742       332 221110     00111


Q ss_pred             cCCCeEEEccCceecceecCcchhHHH---------------------hh---------------------------chh
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQ---------------------KL---------------------------GDD  104 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~~---------------------------~~~  104 (240)
                      ....+|++|+..+++..++.++..+..                     .+                           ...
T Consensus        81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara  160 (250)
T PRK14247         81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA  160 (250)
T ss_pred             hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence            223589999877666666655543210                     00                           112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|+||||++      +..+.++|+++.+  +.|||++|||++++          ..+||++++|++ ++...|+
T Consensus       161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~  228 (250)
T PRK14247        161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQA----------ARISDYVAFLYKGQIVEWGP  228 (250)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhcCEEEEEECCeEEEECC
Confidence            588999999999988      4578888888853  78999999999999          899999999998 8877777


Q ss_pred             cce
Q 026304          178 RAF  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ++.
T Consensus       229 ~~~  231 (250)
T PRK14247        229 TRE  231 (250)
T ss_pred             HHH
Confidence            654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.95  E-value=2.3e-27  Score=203.24  Aligned_cols=162  Identities=13%  Similarity=0.052  Sum_probs=116.1

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCce-----EEeeccchh
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRN-----IAMIKSSKD   70 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~-----i~~~~~~~~   70 (240)
                      ++|+++|+++.|     ++|+||+|++|++++|+||||||||||+ ++|+|+.        ++|++     +...+....
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLL-GCLAGRLAPDHGTATYIMRSGAELELYQLSEAER   80 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence            479999999998     8999999999999999999999999999 9999972        22322     221111111


Q ss_pred             c--ccCCCeEEEccCce--ecceecCcchh--------------------HHHhh------------------------c
Q 026304           71 T--RYAIDSVVTHDGAK--LPCWALPELTS--------------------FRQKL------------------------G  102 (240)
Q Consensus        71 ~--~~~~~~~v~q~~~~--~~~~~~~~~~~--------------------~~~~~------------------------~  102 (240)
                      .  +....+|++|++..  +...++.++..                    +...+                        +
T Consensus        81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la  160 (253)
T TIGR02323        81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA  160 (253)
T ss_pred             HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence            1  11235889987632  22222211110                    00000                        1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      ...+.++|+++.++.|.|||++||+++++          ..+||++++|++ ++...
T Consensus       161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~----------~~~~d~~~~l~~G~i~~~  230 (253)
T TIGR02323       161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVA----------RLLAQRLLVMQQGRVVES  230 (253)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhcCEEEEEECCEEEEE
Confidence            22589999999999988      45788889888764589999999999999          889999999999 88877


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       231 ~~~~~~  236 (253)
T TIGR02323       231 GLTDQV  236 (253)
T ss_pred             CCHHHH
Confidence            776543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=3.6e-28  Score=205.21  Aligned_cols=169  Identities=15%  Similarity=0.070  Sum_probs=119.6

Q ss_pred             ceEEEcceeEee--------------------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCc
Q 026304            9 AAVTTNQVNSGR--------------------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGR   60 (240)
Q Consensus         9 ~~l~~~~ls~~~--------------------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~   60 (240)
                      .|+.++|+++.|                          ++|+||+|++|++++++|||||||||+| |+++|+..  .|+
T Consensus         2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtL-KmLTGll~p~~G~   80 (325)
T COG4586           2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTL-KMLTGLLLPTSGK   80 (325)
T ss_pred             ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhH-HHHhCccccCCCe
Confidence            367888888877                          4799999999999999999999999999 99999732  232


Q ss_pred             -eEEeeccchhcc--cCCCeEEE-ccCceecceecCcchhHH------------H-------------------------
Q 026304           61 -NIAMIKSSKDTR--YAIDSVVT-HDGAKLPCWALPELTSFR------------Q-------------------------   99 (240)
Q Consensus        61 -~i~~~~~~~~~~--~~~~~~v~-q~~~~~~~~~~~~~~~~~------------~-------------------------   99 (240)
                       .+....|..+.+  .+..++|+ |...+..++.+.+.....            .                         
T Consensus        81 v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlG  160 (325)
T COG4586          81 VRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLG  160 (325)
T ss_pred             EEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccch
Confidence             222222221111  01112322 333333332222211110            0                         


Q ss_pred             -----hhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          100 -----KLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       100 -----~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                           .+...++++|++|+|||||-      +..+.+++++..++++.||+.+||+++.+          ..+||||++|
T Consensus       161 qRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di----------~~lc~rv~~I  230 (325)
T COG4586         161 QRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDI----------ATLCDRVLLI  230 (325)
T ss_pred             HHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhH----------HHhhhheEEe
Confidence                 01122689999999999987      56899999999988999999999999999          9999999999


Q ss_pred             cc-eeeccCCcceeeeeecCC
Q 026304          169 TA-RCELCGKRAFFTLRKTEE  188 (240)
Q Consensus       169 ~~-~~~~~g~~~~~~~~~~~~  188 (240)
                      +. +++++|+-+.+..++...
T Consensus       231 ~~Gqlv~dg~l~~l~~~f~~~  251 (325)
T COG4586         231 DQGQLVFDGTLAQLQEQFGPY  251 (325)
T ss_pred             eCCcEeecccHHHHHHHhCCc
Confidence            99 999999887776666443

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-27  Score=207.71  Aligned_cols=159  Identities=15%  Similarity=0.113  Sum_probs=117.1

Q ss_pred             ceEEEcceeEee-----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch
Q 026304            9 AAVTTNQVNSGR-----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~   69 (240)
                      +||+++|++++|           ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|.++.......
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~~   81 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIA-KHMNALLIPSEGKVYVDGLDTSDEENLW   81 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEeccccccHH
Confidence            489999999887           6799999999999999999999999999 9999972        3444332211111


Q ss_pred             hcccCCCeEEEccCc--eecceecCcchhHHH-------------------hh-----------------------chhh
Q 026304           70 DTRYAIDSVVTHDGA--KLPCWALPELTSFRQ-------------------KL-----------------------GDDA  105 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~-------------------~~-----------------------~~~l  105 (240)
                      ..+ ...+|++|++.  ++. .++.++..+..                   .+                       +..+
T Consensus        82 ~~~-~~i~~v~q~~~~~~~~-~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral  159 (280)
T PRK13633         82 DIR-NKAGMVFQNPDNQIVA-TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGIL  159 (280)
T ss_pred             HHh-hheEEEecChhhhhcc-ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence            112 23589999863  332 23333322210                   00                       1225


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++||||||++      +..+.+.|++++++.|.|||++|||++++          .. ||++++|++ ++...|++
T Consensus       160 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~----------~~-~d~v~~l~~G~i~~~g~~  228 (280)
T PRK13633        160 AMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEA----------VE-ADRIIVMDSGKVVMEGTP  228 (280)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHH----------hc-CCEEEEEECCEEEEecCH
Confidence            89999999999988      45788999998764599999999999998          65 999999999 88888887


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +.+
T Consensus       229 ~~~  231 (280)
T PRK13633        229 KEI  231 (280)
T ss_pred             HHH
Confidence            654

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=202.59  Aligned_cols=159  Identities=18%  Similarity=0.132  Sum_probs=117.0

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~   69 (240)
                      .+||+++|++++|     ++++||++.+||+++|+||||||||||+ ++|+|+..       .|.      ++...+...
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (252)
T PRK14255          3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYL-RTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV   81 (252)
T ss_pred             cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence            3589999999998     9999999999999999999999999999 99999631       232      221100001


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH-------------h-----------------h-----------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-----------------L-----------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-----------------~-----------------~  102 (240)
                      .......+|++|+..+++ .++.++..+..             .                 .                 .
T Consensus        82 ~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~la  160 (252)
T PRK14255         82 VQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIA  160 (252)
T ss_pred             HHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHH
Confidence            111223589999876665 34443332110             0                 0                 1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      +..+.++|+++.+  +.|||++|||++++          ..+||++++|++ ++...
T Consensus       161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~~~----------~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14255        161 RVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMHQA----------SRISDKTAFFLTGNLIEF  228 (252)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEe
Confidence            12588999999999988      4578888988865  48999999999999          899999999999 88777


Q ss_pred             CCcce
Q 026304          176 GKRAF  180 (240)
Q Consensus       176 g~~~~  180 (240)
                      |++..
T Consensus       229 ~~~~~  233 (252)
T PRK14255        229 ADTKQ  233 (252)
T ss_pred             CCHHH
Confidence            76644

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.95  E-value=2.9e-27  Score=198.09  Aligned_cols=147  Identities=17%  Similarity=0.090  Sum_probs=112.6

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      .+++|+++|++++|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|+++..   .  .+.
T Consensus         8 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~i~~---~--~~~   81 (214)
T PRK13543          8 APPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLL-RVLAGLLHVESGQIQIDGKTATR---G--DRS   81 (214)
T ss_pred             CcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCCeeEEECCEEccc---h--hhh
Confidence            34689999999998     8999999999999999999999999999 9999972        23333221   0  111


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh----------------h-----------------------chhhhccCcEEEE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK----------------L-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~----------------~-----------------------~~~l~~~p~lllL  114 (240)
                      ...+|++|...+++..++.++..+...                +                       ...++.+|++|+|
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (214)
T PRK13543         82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL  161 (214)
T ss_pred             hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            234788888776666566554432110                0                       1125889999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |||++      ...+.++++++.+ .|.|||++|||++++          ..+||+++++..
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~~~i~~l~~  212 (214)
T PRK13543        162 DEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAYAA----------PPVRTRMLTLEA  212 (214)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChhhh----------hhhcceEEEEee
Confidence            99988      4578888888876 689999999999999          999999998863

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=205.91  Aligned_cols=149  Identities=17%  Similarity=0.172  Sum_probs=110.4

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeecc-------
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKS-------   67 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~-------   67 (240)
                      .+++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.       ..|. +.....       
T Consensus        10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~-v~~~g~~i~~~~~   87 (269)
T PRK14259         10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVL-RSLNRMNDLIEGCSLKGR-VLFDGTDLYDPRV   87 (269)
T ss_pred             CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceE-EEECCEEcccccC
Confidence            34689999999998     9999999999999999999999999999 9999973       2232 221110       


Q ss_pred             chhcccCCCeEEEccCceecceecCcchhHH------------------Hhh---------------------------c
Q 026304           68 SKDTRYAIDSVVTHDGAKLPCWALPELTSFR------------------QKL---------------------------G  102 (240)
Q Consensus        68 ~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~------------------~~~---------------------------~  102 (240)
                      .........+|++|+..+++. ++.+++.+.                  ..+                           +
T Consensus        88 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~la  166 (269)
T PRK14259         88 DPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIA  166 (269)
T ss_pred             CHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHH
Confidence            001111235899998776653 444333210                  000                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ..++.+|++||||||++      +..+.++|+++++  +.|||++|||++++          ..+||++++|++
T Consensus       167 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~~~~----------~~~~d~i~~l~~  228 (269)
T PRK14259        167 RTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNMQQA----------VRVSDMTAFFNA  228 (269)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhcCEEEEEec
Confidence            12588999999999988      4578888988853  68999999999999          999999999985

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.3e-27  Score=205.88  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=117.1

Q ss_pred             CCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeec-------
Q 026304            6 LKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIK-------   66 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~-------   66 (240)
                      ..++||+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+.       ..|. +....       
T Consensus        16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~l~~~~   93 (274)
T PRK14265         16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLL-RCFNRMNDLIPGAKVEGR-LLYRDRNIYDSQ   93 (274)
T ss_pred             CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHH-HHHhcccccccCCCcCce-EEECCEeccccc
Confidence            345699999999998     8999999999999999999999999999 9999973       1343 22111       


Q ss_pred             cchhcccCCCeEEEccCceecceecCcchhHHH------------------h---------------------------h
Q 026304           67 SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------------K---------------------------L  101 (240)
Q Consensus        67 ~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------------~---------------------------~  101 (240)
                      ..........+|++|+..+++. ++.+++.+..                  .                           +
T Consensus        94 ~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L  172 (274)
T PRK14265         94 INSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI  172 (274)
T ss_pred             chhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence            0111112235899998766543 4443332100                  0                           0


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------  169 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------  169 (240)
                      ...++.+|++||||||++      +..+.++|+++.+  +.|||++|||++++          ..+||++++|+      
T Consensus       173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~~~~~~  240 (274)
T PRK14265        173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNMQQA----------SRVADWTAFFNTEIDEY  240 (274)
T ss_pred             HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEecccccc
Confidence            112589999999999988      4578889988864  58999999999999          99999999997      


Q ss_pred             ---c-eeeccCCcce
Q 026304          170 ---A-RCELCGKRAF  180 (240)
Q Consensus       170 ---~-~~~~~g~~~~  180 (240)
                         + +++..|+++.
T Consensus       241 ~~~~G~~~~~g~~~~  255 (274)
T PRK14265        241 GKRRGKLVEFSPTEQ  255 (274)
T ss_pred             cccCceEEEeCCHHH
Confidence               4 6666666654

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.95  E-value=1.6e-27  Score=198.92  Aligned_cols=144  Identities=22%  Similarity=0.245  Sum_probs=105.5

Q ss_pred             EcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           13 TNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        13 ~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+. ...+ ...+
T Consensus         2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~-~~i~   78 (211)
T cd03225           2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLL-RLLNGLLGPTSGEVLVDGKDLTKLSL-KELR-RKVG   78 (211)
T ss_pred             ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEcccCCH-HHHH-hhce
Confidence            46676655       8899999999999999999999999999 9999972        23333322111 1112 2358


Q ss_pred             EEEccCc-eecceecCcchhHHH-------------------hh-----------------------chhhhccCcEEEE
Q 026304           78 VVTHDGA-KLPCWALPELTSFRQ-------------------KL-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        78 ~v~q~~~-~~~~~~~~~~~~~~~-------------------~~-----------------------~~~l~~~p~lllL  114 (240)
                      |++|+.. .++..++.++..+..                   .+                       ...++.+|++|+|
T Consensus        79 ~~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llll  158 (211)
T cd03225          79 LVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL  158 (211)
T ss_pred             EEecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999863 244455554433210                   00                       1125889999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |||++      +..+.+.|+++++ +|.|||++|||++++          ..+||++++|++
T Consensus       159 DEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~~~~----------~~~~d~i~~l~~  209 (211)
T cd03225         159 DEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDLDLL----------LELADRVIVLED  209 (211)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence            99988      4578899999887 589999999999999          889999999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=202.43  Aligned_cols=159  Identities=15%  Similarity=0.129  Sum_probs=119.0

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc-------h
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS-------K   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~-------~   69 (240)
                      .+|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+..       .|. +......       .
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~   80 (252)
T PRK14272          3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFL-RAINRMHDLTPGARVTGR-ILLDGQDIYGPRVDP   80 (252)
T ss_pred             EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCcCCCCcee-EEECCEEcccCccCH
Confidence            379999999998     9999999999999999999999999999 99999731       242 2111100       0


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~  102 (240)
                      .......+|++|+..+++..++.++..+..                    .+                           +
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  160 (252)
T PRK14272         81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA  160 (252)
T ss_pred             HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence            111223589999877776655544332110                    00                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++|+||||++      +..+.+.|+++++  +.|||++||+++++          ..+|||+++|++ ++...
T Consensus       161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~  228 (252)
T PRK14272        161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNMHQA----------ARVSDTTSFFLVGDLVEH  228 (252)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEEe
Confidence            12589999999999988      4578888888853  68999999999999          889999999999 88888


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       229 ~~~~~~  234 (252)
T PRK14272        229 GPTDQL  234 (252)
T ss_pred             CCHHHH
Confidence            876543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.95  E-value=3.6e-27  Score=194.79  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=116.6

Q ss_pred             eEEEcceeEee-----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--h--CCceEEeeccc--hhcc
Q 026304           10 AVTTNQVNSGR-----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--D--NGRNIAMIKSS--KDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~-----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~--~g~~i~~~~~~--~~~~   72 (240)
                      .|+++|++++|           ++++||++++|++++|+||||||||||+ ++|+|+.  .  .|. +......  ....
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl-~~i~Gl~~~~~~~G~-i~~~g~~~~~~~~   80 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLL-NALAGRRTGLGVSGE-VLINGRPLDKRSF   80 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCceE-EEECCEeCchHhh
Confidence            47889998876           5699999999999999999999999999 9999975  2  232 2211111  0111


Q ss_pred             cCCCeEEEccCceecceecCcchhHHHh-------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQK-------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADH  133 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~  133 (240)
                      ....+|++|+..+++.+++.++..+...             +...++.+|++|+||||++      +..+.++|+++.+ 
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-  159 (194)
T cd03213          81 RKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-  159 (194)
T ss_pred             hheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-
Confidence            1235889999888887888877655322             1334789999999999987      4578899998876 


Q ss_pred             CCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeec
Q 026304          134 DGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       134 ~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +|.|+|++|||++ .+          ..+||++++|++ ++..
T Consensus       160 ~~~tiii~sh~~~~~~----------~~~~d~v~~l~~G~i~~  192 (194)
T cd03213         160 TGRTIICSIHQPSSEI----------FELFDKLLLLSQGRVIY  192 (194)
T ss_pred             CCCEEEEEecCchHHH----------HHhcCEEEEEeCCEEEe
Confidence            5999999999996 67          789999999998 6654

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=1.9e-27  Score=206.04  Aligned_cols=160  Identities=18%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             CCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304            7 KPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT   71 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~   71 (240)
                      +.+|++++|+++.|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+. ...
T Consensus         4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~   81 (271)
T PRK13632          4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTIS-KILTGLLKPQSGEIKIDGITISKENL-KEI   81 (271)
T ss_pred             cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEecCcCCH-HHH
Confidence            45699999999987       8999999999999999999999999999 9999972        23333322111 111


Q ss_pred             ccCCCeEEEccCc-eecceecCcchhHHHh-------------------h-----------------------chhhhcc
Q 026304           72 RYAIDSVVTHDGA-KLPCWALPELTSFRQK-------------------L-----------------------GDDAYAK  108 (240)
Q Consensus        72 ~~~~~~~v~q~~~-~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~  108 (240)
                      + ...+|++|++. .+..+++.++..+...                   +                       ...++.+
T Consensus        82 ~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  160 (271)
T PRK13632         82 R-KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALN  160 (271)
T ss_pred             h-cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            2 23589999863 4545566655433110                   0                       1125889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++||||||++      ...++++|++++++.+.|||++||+++++          . .||++++|++ ++...|++..
T Consensus       161 p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~  228 (271)
T PRK13632        161 PEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEA----------I-LADKVIVFSEGKLIAQGKPKE  228 (271)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHH----------h-hCCEEEEEECCEEEEecCHHH
Confidence            99999999987      45788999998763358999999999988          5 7999999999 8877776654

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2e-27  Score=206.79  Aligned_cols=159  Identities=14%  Similarity=0.057  Sum_probs=116.9

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc--ch
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS--SK   69 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~--~~   69 (240)
                      .|+++|++++|          ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...++  ..
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~   80 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIM-QLLNGLHVPTQGSVRVDDTLITSTSKNKDI   80 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEccccccccCH
Confidence            38899999887          5899999999999999999999999999 9999972        34444432211  00


Q ss_pred             hcccCCCeEEEccC--ceecceecCcchhHHH-------------------hh------------------------chh
Q 026304           70 DTRYAIDSVVTHDG--AKLPCWALPELTSFRQ-------------------KL------------------------GDD  104 (240)
Q Consensus        70 ~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~-------------------~~------------------------~~~  104 (240)
                      .......+|++|+.  .+++ .++.++..+..                   .+                        ...
T Consensus        81 ~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a  159 (280)
T PRK13649         81 KQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGI  159 (280)
T ss_pred             HHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence            11112358999975  3333 34444332210                   00                        112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++||||||++      +..+.+.|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+
T Consensus       160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~g~  228 (280)
T PRK13649        160 LAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDV----------ANYADFVYVLEKGKLVLSGK  228 (280)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHHHH----------HHhCCEEEEEECCEEEEeCC
Confidence            589999999999988      4578899998876 589999999999999          899999999999 8877777


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      ++.+
T Consensus       229 ~~~~  232 (280)
T PRK13649        229 PKDI  232 (280)
T ss_pred             HHHH
Confidence            6543

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.8e-27  Score=202.41  Aligned_cols=157  Identities=17%  Similarity=0.160  Sum_probs=117.4

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeecc-------chh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKS-------SKD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~-------~~~   70 (240)
                      ||+++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+.       ..|. +.....       ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~-i~i~g~~~~~~~~~~~   80 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLL-RSINRMNDHIPGFRVEGK-IYFKGQDIYDPQLDVT   80 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceE-EEECCEEcccchhhHH
Confidence            79999999998     8999999999999999999999999999 9999973       2232 221110       001


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHH--------------------h---------------------------hch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K---------------------------LGD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~---------------------------~~~  103 (240)
                      ......+|++|++.+++ .++.++..+..                    .                           +..
T Consensus        81 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~  159 (250)
T PRK14262         81 EYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR  159 (250)
T ss_pred             HhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence            11223589999877665 45544332210                    0                           011


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++|+||||++      +..+.++|+++.+  +.|||++|||++.+          ..+||++++|++ ++...|
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~~~~----------~~~~d~i~~l~~G~i~~~g  227 (250)
T PRK14262        160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNIGQA----------IRIADYIAFMYRGELIEYG  227 (250)
T ss_pred             HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEec
Confidence            2588999999999988      4578889988864  68999999999998          899999999999 888777


Q ss_pred             Cccee
Q 026304          177 KRAFF  181 (240)
Q Consensus       177 ~~~~~  181 (240)
                      +++.+
T Consensus       228 ~~~~~  232 (250)
T PRK14262        228 PTREI  232 (250)
T ss_pred             CHHHH
Confidence            76543

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=204.24  Aligned_cols=166  Identities=17%  Similarity=0.146  Sum_probs=124.2

Q ss_pred             CcCCCCCCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--C------Cce------
Q 026304            1 MAASNLKPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--N------GRN------   61 (240)
Q Consensus         1 m~~~~~~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~------g~~------   61 (240)
                      |.+.+...++|++++++++|     ++|+||++.+||+++|+||||||||||+ ++|+|+..  .      |..      
T Consensus         1 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~iaG~~~~~~G~v~~~G~~~~~g~~   79 (257)
T PRK14246          1 MEAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLL-KVLNRLIEIYDSKIKVDGKVLYFGKD   79 (257)
T ss_pred             CCCchhhhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCcCceeEcCEEEECCcc
Confidence            45556667899999999999     9999999999999999999999999999 99999732  2      321      


Q ss_pred             EEeeccchhcccCCCeEEEccCceecceecCcchhHHH--------------------hh--------------------
Q 026304           62 IAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL--------------------  101 (240)
Q Consensus        62 i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~--------------------  101 (240)
                      +...+. ...+ ...+|++|++.+++..++.++..+..                    .+                    
T Consensus        80 ~~~~~~-~~~~-~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         80 IFQIDA-IKLR-KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             cccCCH-HHHh-cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence            111111 1112 23589999887776656554433210                    00                    


Q ss_pred             -------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          102 -------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       102 -------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                             +..++.+|++++||||++      +..+.+.|.++.+  +.|||++||+++++          ..+||++++|
T Consensus       158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~~~~----------~~~~d~v~~l  225 (257)
T PRK14246        158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQV----------ARVADYVAFL  225 (257)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCHHHH----------HHhCCEEEEE
Confidence                   112589999999999988      4578888888854  58999999999999          8999999999


Q ss_pred             cc-eeeccCCccee
Q 026304          169 TA-RCELCGKRAFF  181 (240)
Q Consensus       169 ~~-~~~~~g~~~~~  181 (240)
                      ++ ++...|+++++
T Consensus       226 ~~g~i~~~g~~~~~  239 (257)
T PRK14246        226 YNGELVEWGSSNEI  239 (257)
T ss_pred             ECCEEEEECCHHHH
Confidence            98 88777776543

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3e-27  Score=202.66  Aligned_cols=160  Identities=15%  Similarity=0.088  Sum_probs=117.1

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~   69 (240)
                      .+||+++|++++|     ++|+||++++||+++|+||||||||||+ ++|+|+.-       .|.      ++...+...
T Consensus         4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   82 (253)
T PRK14261          4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLL-RCFNRMNDLIPGCRITGDILYNGENIMDSGADV   82 (253)
T ss_pred             cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHH-HHHhccccCCCCCCcceEEEECCEEccccccch
Confidence            3489999999998     9999999999999999999999999999 99999621       342      221110001


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH--------------------h---------------------------hc
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K---------------------------LG  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~---------------------------~~  102 (240)
                      .......+|++|+..+++. ++.++..+..                    .                           +.
T Consensus        83 ~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  161 (253)
T PRK14261         83 VALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIA  161 (253)
T ss_pred             hhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHH
Confidence            1112235899998776642 4433322110                    0                           01


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|+++|||||++      +..+.++|+++++  +.|||++||+++++          ..+||++++|++ ++...
T Consensus       162 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~~~----------~~~~d~v~~l~~G~i~~~  229 (253)
T PRK14261        162 RTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQQA----------ARVSDYTGFMYLGKLIEF  229 (253)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHHHH----------HhhCCEEEEEECCEEEEc
Confidence            12588999999999988      4578888888864  58999999999999          899999999999 88877


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       230 g~~~~~  235 (253)
T PRK14261        230 DKTTQI  235 (253)
T ss_pred             CCHHHH
Confidence            776543

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.95  E-value=4.1e-27  Score=197.00  Aligned_cols=151  Identities=20%  Similarity=0.093  Sum_probs=112.1

Q ss_pred             EEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc--chhcccCCC
Q 026304           11 VTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS--SKDTRYAID   76 (240)
Q Consensus        11 l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~--~~~~~~~~~   76 (240)
                      +.+ +|+++|    + |+||++++ ++++|+||||||||||+ ++|+|+.        ++|.++.....  .........
T Consensus         2 ~~~-~l~~~~~~~~~-~vsl~i~~-e~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   77 (214)
T cd03297           2 LCV-DIEKRLPDFTL-KIDFDLNE-EVTGIFGASGAGKSTLL-RCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI   77 (214)
T ss_pred             cee-eeeEecCCeee-CceEEEcc-eeEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence            455 889998    6 99999999 99999999999999999 9999972        23333221110  001111235


Q ss_pred             eEEEccCceecceecCcchhHHHh-----------------h-----------------------chhhhccCcEEEEcC
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-----------------L-----------------------GDDAYAKLDVIGIDE  116 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-----------------~-----------------------~~~l~~~p~lllLDE  116 (240)
                      +|++|+..+++.+++.++..+...                 +                       ...++.+|++|+|||
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  157 (214)
T cd03297          78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE  157 (214)
T ss_pred             EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            899999887777677665432110                 0                       112589999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      |++      +..+.++|++++++.|.|||++|||++++          ..+||++++|++ ++...
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~  213 (214)
T cd03297         158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA----------EYLADRIVVMEDGRLQYI  213 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH----------HHhcCEEEEEECCEEEec
Confidence            988      45788999998764589999999999999          899999999998 76543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.95  E-value=2.1e-27  Score=201.89  Aligned_cols=156  Identities=17%  Similarity=0.157  Sum_probs=119.6

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ++++|++++|     ++++||++.+|++++|+||||||||||+ ++|+|+.        ++|.++...+    ......+
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~i~g~~~~~~~----~~~~~i~   75 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLL-RIIAGLEQPDSGRIRLNGQDATRVH----ARDRKIG   75 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEEcCcCC----hhhcCEE
Confidence            4688999988     9999999999999999999999999999 9999972        2333322111    1122358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++..++.++..+...                   +                       ...++.+|++++||
T Consensus        76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD  155 (237)
T TIGR00968        76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD  155 (237)
T ss_pred             EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99998877776666655433110                   0                       11158899999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||++      ...+.++|++++++.+.|||++||+++++          ..+||++++|++ ++...|+++.+
T Consensus       156 EP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~----------~~~~d~i~~l~~g~i~~~~~~~~~  218 (237)
T TIGR00968       156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEA----------MEVADRIVVMSNGKIEQIGSPDEV  218 (237)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HhhcCEEEEEECCEEEEecCHHHH
Confidence            9988      45788999988763489999999999999          899999999999 88777776544

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.9e-27  Score=203.39  Aligned_cols=157  Identities=12%  Similarity=0.083  Sum_probs=116.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc-------hh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS-------KD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~-------~~   70 (240)
                      +++++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+..       .|. +......       ..
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~-I~~~g~~~~~~~~~~~   81 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVL-RTLNRMHEVIPGARVEGE-VLLDGEDLYGPGVDPV   81 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcccCCCcceE-EEECCEeccccccChH
Confidence            79999999998     8999999999999999999999999999 99999742       332 2211100       01


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~  103 (240)
                      ......+|++|+..+++..++.++..+..                    .+                           +.
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  161 (258)
T PRK14241         82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR  161 (258)
T ss_pred             HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence            11223589999877766555554432110                    00                           11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-  170 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-  170 (240)
                      .++.+|++||||||++      ...+.++|+++++  +.|||++|||++++          ..+||++++|+      + 
T Consensus       162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~~~~----------~~~~d~i~~l~~~~~~~~g  229 (258)
T PRK14241        162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNMQQA----------ARVSDQTAFFNLEATGKPG  229 (258)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------HHhCCEEEEEecccCCCCc
Confidence            1588999999999988      4578888888853  58999999999999          89999999996      5 


Q ss_pred             eeeccCCcce
Q 026304          171 RCELCGKRAF  180 (240)
Q Consensus       171 ~~~~~g~~~~  180 (240)
                      ++...|+++.
T Consensus       230 ~i~~~~~~~~  239 (258)
T PRK14241        230 RLVEIDDTEK  239 (258)
T ss_pred             eEEecCCHHH
Confidence            7777777654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.95  E-value=6.3e-27  Score=200.38  Aligned_cols=158  Identities=15%  Similarity=0.113  Sum_probs=114.2

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc---h-hCC------ceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE---S-DNG------RNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl---~-~~g------~~i~~~~~~~~~~~   73 (240)
                      ++|+++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+   . ..|      .++...++... +.
T Consensus         6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~-~~   83 (252)
T CHL00131          6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLS-KVIAGHPAYKILEGDILFKGESILDLEPEER-AH   83 (252)
T ss_pred             ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHH-HHHcCCCcCcCCCceEEECCEEcccCChhhh-he
Confidence            489999999998     8999999999999999999999999999 999996   1 223      22222211111 11


Q ss_pred             CCCeEEEccCceecceecCcchhH--------------------------HHh---------------h----------c
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSF--------------------------RQK---------------L----------G  102 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~--------------------------~~~---------------~----------~  102 (240)
                      ...++++|+..+++..++.++..+                          ...               +          .
T Consensus        84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la  163 (252)
T CHL00131         84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL  163 (252)
T ss_pred             eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence            113577787654443332211100                          000               0          1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeec
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCEL  174 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~  174 (240)
                      ..++.+|++||||||++      ...+.++|+++++ .|.|||++|||++++          ..+ ||++++|++ ++..
T Consensus       164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~~----------~~~~~d~i~~l~~G~i~~  232 (252)
T CHL00131        164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRLL----------DYIKPDYVHVMQNGKIIK  232 (252)
T ss_pred             HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------HhhhCCEEEEEeCCEEEE
Confidence            12588999999999988      4578899999876 689999999999998          776 899999998 8887


Q ss_pred             cCCcc
Q 026304          175 CGKRA  179 (240)
Q Consensus       175 ~g~~~  179 (240)
                      .|+++
T Consensus       233 ~~~~~  237 (252)
T CHL00131        233 TGDAE  237 (252)
T ss_pred             ecChh
Confidence            77765

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.95  E-value=2.1e-27  Score=227.15  Aligned_cols=162  Identities=14%  Similarity=0.042  Sum_probs=123.3

Q ss_pred             ceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEe
Q 026304            9 AAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAM   64 (240)
Q Consensus         9 ~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~   64 (240)
                      ++|+++||++.|                ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|+++..
T Consensus       312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTG-RALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCcEEEECCEECCc
Confidence            589999999866                5799999999999999999999999999 9999972        34444432


Q ss_pred             eccch-hcccCCCeEEEccC--ceecceecCcchhHHH--------------------hh--------------------
Q 026304           65 IKSSK-DTRYAIDSVVTHDG--AKLPCWALPELTSFRQ--------------------KL--------------------  101 (240)
Q Consensus        65 ~~~~~-~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~--------------------~~--------------------  101 (240)
                      .+... .......+|++|++  .+++.+++.+++.+..                    .+                    
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence            22111 11122358999986  4666666654432210                    00                    


Q ss_pred             ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304          102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-  170 (240)
Q Consensus       102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-  170 (240)
                          +..++.+|++|||||||+      +.+++++|++++++.|.|||++|||++++          ..+||||++|++ 
T Consensus       471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v----------~~~~dri~vl~~G  540 (623)
T PRK10261        471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVV----------ERISHRVAVMYLG  540 (623)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence                112588999999999988      45799999999875689999999999999          999999999999 


Q ss_pred             eeeccCCccee
Q 026304          171 RCELCGKRAFF  181 (240)
Q Consensus       171 ~~~~~g~~~~~  181 (240)
                      +++..|+++.+
T Consensus       541 ~iv~~g~~~~i  551 (623)
T PRK10261        541 QIVEIGPRRAV  551 (623)
T ss_pred             EEEEecCHHHH
Confidence            88888887653

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3e-27  Score=202.40  Aligned_cols=158  Identities=16%  Similarity=0.078  Sum_probs=118.0

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccchh
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSSKD   70 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~~~   70 (240)
                      ++|+++|++++|     ++++||++++||+++|+||||||||||+ ++|+|+.       ..|.      ++...+....
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~   81 (251)
T PRK14270          3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFL-RCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV   81 (251)
T ss_pred             cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence            589999999998     8999999999999999999999999999 9999973       2342      2211111001


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~  103 (240)
                      ......+|++|+..+++ .++.++..+..                    .+                           ..
T Consensus        82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar  160 (251)
T PRK14270         82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR  160 (251)
T ss_pred             HHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence            11223589999877665 45544432210                    00                           11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++|+||||++      +..+.++|+++.+  +.|||++|||++++          ..+|||+++|++ ++...|
T Consensus       161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~----------~~~~d~v~~l~~G~i~~~~  228 (251)
T PRK14270        161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQQA----------SRVSDYTAFFLMGDLIEFN  228 (251)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHHHH----------HHhcCEEEEEECCeEEEeC
Confidence            1478999999999988      4578889988865  48999999999999          899999999999 888777


Q ss_pred             Ccce
Q 026304          177 KRAF  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +++.
T Consensus       229 ~~~~  232 (251)
T PRK14270        229 KTEK  232 (251)
T ss_pred             CHHH
Confidence            7654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.7e-27  Score=203.12  Aligned_cols=159  Identities=15%  Similarity=0.127  Sum_probs=116.8

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~   69 (240)
                      ++|+++|++++|     ++|+||++++|++++|+||||||||||+ ++|+|+..       .|. +.....       ..
T Consensus         6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~g~i~~~G~-i~~~g~~i~~~~~~~   83 (261)
T PRK14258          6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFL-KCLNRMNELESEVRVEGR-VEFFNQNIYERRVNL   83 (261)
T ss_pred             ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCccccce-EEECCEEhhccccch
Confidence            489999999998     8999999999999999999999999999 99999832       332 221110       10


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~  102 (240)
                      .......+|++|+..+++ .++.++..+..                    .+                           +
T Consensus        84 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  162 (261)
T PRK14258         84 NRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA  162 (261)
T ss_pred             HHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence            111223578898876666 55544332210                    00                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc------
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA------  170 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~------  170 (240)
                      ..++.+|++|+||||++      ...+.+.|++++++.+.|||++|||++++          ..+||++++|++      
T Consensus       163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i----------~~~~d~i~~l~~~~~~~G  232 (261)
T PRK14258        163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQV----------SRLSDFTAFFKGNENRIG  232 (261)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH----------HHhcCEEEEEccCCCcCc
Confidence            12588999999999988      45788888888654589999999999999          999999999994      


Q ss_pred             eeeccCCcce
Q 026304          171 RCELCGKRAF  180 (240)
Q Consensus       171 ~~~~~g~~~~  180 (240)
                      +++..|+++.
T Consensus       233 ~i~~~~~~~~  242 (261)
T PRK14258        233 QLVEFGLTKK  242 (261)
T ss_pred             eEEEeCCHHH
Confidence            5555566544

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.6e-27  Score=203.88  Aligned_cols=160  Identities=16%  Similarity=0.083  Sum_probs=118.9

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc------
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS------   68 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~------   68 (240)
                      +.++|+++|++++|     ++++||++.+||+++|+||||||||||+ ++|+|+..       .|. +......      
T Consensus        17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~   94 (267)
T PRK14237         17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYL-RSLNRMNDTIDIARVTGQ-ILYRGIDINRKEI   94 (267)
T ss_pred             CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCccCCCCcceE-EEECCEEcccccC
Confidence            34589999999998     8999999999999999999999999999 99999742       342 2211100      


Q ss_pred             -hhcccCCCeEEEccCceecceecCcchhHHH--------------------hh--------------------------
Q 026304           69 -KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL--------------------------  101 (240)
Q Consensus        69 -~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~--------------------------  101 (240)
                       ........+|++|+..+++ .++.++..+..                    .+                          
T Consensus        95 ~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~  173 (267)
T PRK14237         95 NVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC  173 (267)
T ss_pred             ChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence             0111223589999876665 34444332210                    00                          


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++|+||||++      ...+.++|+++.+  +.|||++||+++++          ..+||++++|++ ++.
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~  241 (267)
T PRK14237        174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNMQQA----------ARASDYTAFFYLGDLI  241 (267)
T ss_pred             HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------HHhcCEEEEEECCEEE
Confidence             112588999999999988      4578888888853  68999999999999          899999999999 888


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|++..+
T Consensus       242 ~~g~~~~~  249 (267)
T PRK14237        242 EYDKTRNI  249 (267)
T ss_pred             EeCCHHHH
Confidence            77776543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.9e-27  Score=201.75  Aligned_cols=158  Identities=16%  Similarity=0.078  Sum_probs=117.1

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeec-------cch
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIK-------SSK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~-------~~~   69 (240)
                      ++|+++|++++|     ++++||+|.+|++++|+||||||||||+ ++|+|+..       .|. +....       ...
T Consensus         3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-v~~~g~~~~~~~~~~   80 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLL-RALNRMNDIVSGARLEGA-VLLDNENIYSPNLDV   80 (251)
T ss_pred             ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCccccCCcccE-EEECCEEccccccCh
Confidence            479999999998     8999999999999999999999999999 99999732       233 21111       000


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------------~  102 (240)
                      .......+|++|+..+++. ++.++..+..             .       +                           .
T Consensus        81 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la  159 (251)
T PRK14249         81 VNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA  159 (251)
T ss_pred             HHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence            1112235899998776653 4443332110             0       0                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++|+||||++      ...+.++|+++.  ++.|||++|||++++          ..+||++++|++ ++...
T Consensus       160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~~~~----------~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14249        160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNMQQA----------ARASDWTGFLLTGDLVEY  227 (251)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHH----------HhhCCEEEEEeCCeEEEe
Confidence            12588999999999988      346888888884  478999999999999          899999999998 88777


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       228 ~~~~~~  233 (251)
T PRK14249        228 GRTGEI  233 (251)
T ss_pred             CCHHHH
Confidence            776543

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.95  E-value=7.3e-27  Score=192.59  Aligned_cols=148  Identities=20%  Similarity=0.171  Sum_probs=114.3

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch----hCCceEEeeccch-hcccCC
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES----DNGRNIAMIKSSK-DTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~----~~g~~i~~~~~~~-~~~~~~   75 (240)
                      +|+++|+++.|         ++++||++++|++++|+||||||||||+ ++|+|+.    ..|. +....... ......
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~~~G~-i~~~g~~~~~~~~~~   80 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLL-DVLAGRKTAGVITGE-ILINGRPLDKNFQRS   80 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCcceE-EEECCEehHHHhhhc
Confidence            68899998876         7899999999999999999999999999 9999963    2332 22111110 111123


Q ss_pred             CeEEEccCceecceecCcchhHHHh---h----------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK---L----------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGK  136 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~---~----------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~  136 (240)
                      .+|++|+..+++.+++.++..+...   +          ...++.+|++|++|||++      +..+++.++++++ .|.
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~  159 (192)
T cd03232          81 TGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQ  159 (192)
T ss_pred             eEEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCC
Confidence            5899998888888888888765321   2          334789999999999988      4578889998876 689


Q ss_pred             EEEEEecChh-hhhcccchHHHHHhhccceeeecc
Q 026304          137 TVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       137 tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |||++||+++ .+          ..+||++++|++
T Consensus       160 tiiivtH~~~~~~----------~~~~d~i~~l~~  184 (192)
T cd03232         160 AILCTIHQPSASI----------FEKFDRLLLLKR  184 (192)
T ss_pred             EEEEEEcCChHHH----------HhhCCEEEEEcC
Confidence            9999999998 46          789999999975

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.95  E-value=2.5e-27  Score=205.96  Aligned_cols=158  Identities=14%  Similarity=0.048  Sum_probs=119.4

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      +|+++|++++|        ++++||++.+||+++|+|+||||||||+ ++|+|+.        ++|+++...+. ...+ 
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~i~~~~~-~~~~-   80 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTA-RLIDGLFEEFEGKVKIDGELLTAENV-WNLR-   80 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCCEEEECCEECCcCCH-HHHh-
Confidence            79999999987        7899999999999999999999999999 9999972        34444322111 1112 


Q ss_pred             CCCeEEEccCc-eecceecCcchhHHHh------------------------------------------hchhhhccCc
Q 026304           74 AIDSVVTHDGA-KLPCWALPELTSFRQK------------------------------------------LGDDAYAKLD  110 (240)
Q Consensus        74 ~~~~~v~q~~~-~~~~~~~~~~~~~~~~------------------------------------------~~~~l~~~p~  110 (240)
                      ...+|++|++. .+...++.+++.+...                                          ++..++.+|+
T Consensus        81 ~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~  160 (277)
T PRK13642         81 RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPE  160 (277)
T ss_pred             cceEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            33589999863 4444555544432100                                          0112589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      +..+.++|++++++.|.|||++|||++++          . .||++++|++ ++...|+++++
T Consensus       161 llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~~~  227 (277)
T PRK13642        161 IIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEA----------A-SSDRILVMKAGEIIKEAAPSEL  227 (277)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEeCCHHHH
Confidence            999999988      45788999998764589999999999998          6 5999999999 88888877653

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.94  E-value=4.8e-27  Score=203.26  Aligned_cols=161  Identities=12%  Similarity=0.033  Sum_probs=117.4

Q ss_pred             eEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeecc
Q 026304           10 AVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKS   67 (240)
Q Consensus        10 ~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~   67 (240)
                      ||+++|++++|              ++|+||+|++|++++|+||||||||||+ ++|+|+.        ++|+++....+
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLA-RLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEeccccCh
Confidence            78999998876              5799999999999999999999999999 9999972        23433332222


Q ss_pred             ch-hcccCCCeEEEccCc--eecceecCcchhH--------------------HHhh-----------------------
Q 026304           68 SK-DTRYAIDSVVTHDGA--KLPCWALPELTSF--------------------RQKL-----------------------  101 (240)
Q Consensus        68 ~~-~~~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~~~~-----------------------  101 (240)
                      .. .......+|++|+..  +++..++.++..+                    ...+                       
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence            11 111223589999862  3333443332211                    0000                       


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++||||||++      +..+.++|++++++.+.|||++||+++++          ..+||++++|++ ++.
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i----------~~~~d~i~~l~~G~i~  231 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLV----------ERFCQRVMVMDNGQIV  231 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHH----------HHhCCEEEEEECCEEe
Confidence             112589999999999987      34688999988764589999999999999          889999999998 888


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+++++
T Consensus       232 ~~g~~~~~  239 (268)
T PRK10419        232 ETQPVGDK  239 (268)
T ss_pred             eeCChhhc
Confidence            88876553

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.8e-27  Score=201.07  Aligned_cols=157  Identities=14%  Similarity=0.117  Sum_probs=116.3

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~   69 (240)
                      ++|+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|. +.....       ..
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~p~~~~~G~-v~i~g~~~~~~~~~~   80 (251)
T PRK14251          3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFL-RCLNRMNDDIENIKITGE-IKFEGQNIYGSKMDL   80 (251)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccccccCCCcceE-EEECCEEcccccchH
Confidence            479999999998     8999999999999999999999999999 99999742       332 221110       00


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH--------------------h--h-------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K--L-------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~--~-------------------------~  102 (240)
                      .......+|++|+..+++ .++.++..+..                    .  +                         .
T Consensus        81 ~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la  159 (251)
T PRK14251         81 VELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA  159 (251)
T ss_pred             HHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence            111223588999876654 34444332110                    0  0                         1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      +..+.+.|+++.+  +.|||++|||++++          ..+||++++|++ ++...
T Consensus       160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~~~~----------~~~~d~i~~l~~G~i~~~  227 (251)
T PRK14251        160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNLQQA----------GRISDQTAFLMNGDLIEA  227 (251)
T ss_pred             HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCHHHH----------HhhcCEEEEEECCEEEEe
Confidence            12588999999999987      4578888888853  68999999999999          899999999998 88777


Q ss_pred             CCcce
Q 026304          176 GKRAF  180 (240)
Q Consensus       176 g~~~~  180 (240)
                      |+++.
T Consensus       228 ~~~~~  232 (251)
T PRK14251        228 GPTEE  232 (251)
T ss_pred             CCHHH
Confidence            76543

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.9e-27  Score=203.70  Aligned_cols=158  Identities=15%  Similarity=0.076  Sum_probs=117.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc-------
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS-------   68 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~-------   68 (240)
                      .++|+++|+++.|     ++|+||+|++|++++|+||||||||||+ ++|+|+.       ..|. +......       
T Consensus        17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-I~~~g~~i~~~~~~   94 (267)
T PRK14235         17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFL-RCLNRMNDTIDGCRVTGK-ITLDGEDIYDPRLD   94 (267)
T ss_pred             CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceE-EEECCEECcccccc
Confidence            4589999999998     8999999999999999999999999999 9999974       2332 2211110       


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHHH---------------------h--h------------------------
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ---------------------K--L------------------------  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~--~------------------------  101 (240)
                      ........+|++|+..+++. ++.+++.+..                     .  +                        
T Consensus        95 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~  173 (267)
T PRK14235         95 VVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC  173 (267)
T ss_pred             hHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence            11112235899998766653 4443332110                     0  0                        


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       +..++.+|++||||||++      +..+.++|+++.+  +.|||++|||++++          ..+||++++|++ ++.
T Consensus       174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~~~~----------~~~~d~v~~l~~G~i~  241 (267)
T PRK14235        174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSMQQA----------ARVSQRTAFFHLGNLV  241 (267)
T ss_pred             HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCHHHH----------HhhCCEEEEEECCEEE
Confidence             112588999999999988      4578889988864  68999999999999          899999999998 888


Q ss_pred             ccCCcce
Q 026304          174 LCGKRAF  180 (240)
Q Consensus       174 ~~g~~~~  180 (240)
                      ..|++..
T Consensus       242 ~~g~~~~  248 (267)
T PRK14235        242 EVGDTEK  248 (267)
T ss_pred             EeCCHHH
Confidence            7777654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-27  Score=205.33  Aligned_cols=161  Identities=12%  Similarity=0.068  Sum_probs=117.4

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc------eEEeeccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR------NIAMIKSS   68 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~------~i~~~~~~   68 (240)
                      ..++|+++|++++|     ++|+||+|++|++++|+||||||||||+ ++|+|+.       ..|.      ++......
T Consensus        36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~  114 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFL-RAINRMNDLIPSCHTTGALMFDGEDIYGKFTD  114 (286)
T ss_pred             CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence            34589999999998     8999999999999999999999999999 9999962       2232      22111011


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHHH------------------------------h-----------------h
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------------------------K-----------------L  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------------------------~-----------------~  101 (240)
                      ........+|++|++.+++. ++.+++.+..                              .                 +
T Consensus       115 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L  193 (286)
T PRK14275        115 EVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCV  193 (286)
T ss_pred             hHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHH
Confidence            11112235899998766542 3333222100                              0                 0


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ...++.+|++||||||++      ...+.+.|++++.  +.|||++|||++++          ..+||++++|++ ++..
T Consensus       194 AraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~~~----------~~~~d~i~~L~~G~i~~  261 (286)
T PRK14275        194 ARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQQA----------SRVSDYTMFFYEGVLVE  261 (286)
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEE
Confidence            112588999999999988      4578888888864  58999999999999          899999999998 8888


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|++..+
T Consensus       262 ~g~~~~~  268 (286)
T PRK14275        262 HAPTAQL  268 (286)
T ss_pred             eCCHHHH
Confidence            8876543

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=5.6e-27  Score=203.17  Aligned_cols=159  Identities=13%  Similarity=0.118  Sum_probs=117.7

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc-------
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS-------   68 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~-------   68 (240)
                      .++|+++|++++|     ++++||+|++|++++|+|+||||||||+ ++|+|+.       ..|. +......       
T Consensus        22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl-~~i~Gl~~~~~~~~~~G~-i~~~g~~~~~~~~~   99 (271)
T PRK14238         22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYI-KTLNRMVELVPSVKTTGK-ILYRDQNIFDKSYS   99 (271)
T ss_pred             ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhccCCCCCCCcee-EEECCEEccccccc
Confidence            4589999999998     8999999999999999999999999999 9999974       2232 2211100       


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHH----------------H----h------h---------------------
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFR----------------Q----K------L---------------------  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~----------------~----~------~---------------------  101 (240)
                      ........+|++|+..+++. ++.++..+.                .    .      +                     
T Consensus       100 ~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~l  178 (271)
T PRK14238        100 VEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCI  178 (271)
T ss_pred             HHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHH
Confidence            01112235899998766542 444332210                0    0      0                     


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +..++.+|++||||||++      ...+.++|+++.+  +.|||++|||++++          ..+||++++|++ ++..
T Consensus       179 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~~i----------~~~~d~i~~l~~G~i~~  246 (271)
T PRK14238        179 ARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNMQQA----------ARISDKTAFFLNGYVNE  246 (271)
T ss_pred             HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCHHHH----------HHhCCEEEEEECCEEEE
Confidence            112588999999999988      4578888888864  68999999999999          899999999999 8877


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|++..+
T Consensus       247 ~g~~~~~  253 (271)
T PRK14238        247 YDDTDKI  253 (271)
T ss_pred             eCCHHHH
Confidence            7776543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.94  E-value=3.8e-27  Score=191.97  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=109.3

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|++++|       ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++... + ...+ ..
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~-~-~~~~-~~   76 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLL-QLLTGDLKPQQGEITLDGVPVSDL-E-KALS-SL   76 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCEEEECCEEHHHH-H-HHHH-hh
Confidence            4678888887       7899999999999999999999999999 9999972        223222111 0 1111 23


Q ss_pred             CeEEEccCceecceecCcch--------hHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEE
Q 026304           76 DSVVTHDGAKLPCWALPELT--------SFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVA  141 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~--------~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~v  141 (240)
                      .+|++|++.+++ .++.++.        .....+...++.+|++|+||||++      ...+++.|+++.  ++.|||++
T Consensus        77 i~~~~q~~~~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~  153 (178)
T cd03247          77 ISVLNQRPYLFD-TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWI  153 (178)
T ss_pred             EEEEccCCeeec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEE
Confidence            489999887775 4665543        111123455799999999999987      457888888874  47899999


Q ss_pred             ecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          142 GLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       142 tHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      |||++++          . .||++++|++ ++..
T Consensus       154 sh~~~~~----------~-~~d~~~~l~~g~i~~  176 (178)
T cd03247         154 THHLTGI----------E-HMDKILFLENGKIIM  176 (178)
T ss_pred             ecCHHHH----------H-hCCEEEEEECCEEEe
Confidence            9999988          5 6999999988 6654

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.7e-27  Score=220.42  Aligned_cols=155  Identities=17%  Similarity=0.203  Sum_probs=117.4

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      +||+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++. ......
T Consensus         3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~i~~~~~~-~~~~~~   80 (501)
T PRK11288          3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLL-KILSGNYQPDAGSILIDGQEMRFASTT-AALAAG   80 (501)
T ss_pred             ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEECCCCCHH-HHHhCC
Confidence            589999999998     8999999999999999999999999999 9999973        233332211111 111223


Q ss_pred             CeEEEccCceecceecCcchhHHH---------------h-------h-----------------------chhhhccCc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ---------------K-------L-----------------------GDDAYAKLD  110 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~---------------~-------~-----------------------~~~l~~~p~  110 (240)
                      .+|++|...+++.+++.++..+..               .       +                       +..++.+|+
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~  160 (501)
T PRK11288         81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNAR  160 (501)
T ss_pred             EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCC
Confidence            589999877766656544432210               0       0                       112588999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      +|||||||+      ...+.++|+++++ +|.|||++|||++++          ..+||++++|++ ++...+
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~~~----------~~~~d~i~~l~~G~i~~~~  222 (501)
T PRK11288        161 VIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRMEEI----------FALCDAITVFKDGRYVATF  222 (501)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEeec
Confidence            999999988      4578899999876 699999999999999          899999999998 765444

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.1e-27  Score=202.16  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=115.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeecc-------c
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKS-------S   68 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~-------~   68 (240)
                      .++|+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+.       ..|. +.....       .
T Consensus         8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~   85 (264)
T PRK14243          8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTIL-RCFNRLNDLIPGFRVEGK-VTFHGKNLYAPDVD   85 (264)
T ss_pred             ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhcccCCCCCceE-EEECCEEccccccC
Confidence            4589999999998     8999999999999999999999999999 9999863       1232 221110       0


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHH------------------Hh---------------------------hch
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFR------------------QK---------------------------LGD  103 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~------------------~~---------------------------~~~  103 (240)
                      ........+|++|+..+++. ++.++..+.                  ..                           +..
T Consensus        86 ~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar  164 (264)
T PRK14243         86 PVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR  164 (264)
T ss_pred             hHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence            01111235899998766542 443332210                  00                           011


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--------
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--------  169 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--------  169 (240)
                      .++.+|++||||||++      +..+.++|.++.+  +.|||++|||++++          ..+|||+++|+        
T Consensus       165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~~~----------~~~~d~v~~l~~~~~~~~~  232 (264)
T PRK14243        165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQA----------ARVSDMTAFFNVELTEGGG  232 (264)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHHHH----------HHhCCEEEEEecccccccc
Confidence            2588999999999988      4578899988865  47999999999999          99999999998        


Q ss_pred             -c-eeeccCCccee
Q 026304          170 -A-RCELCGKRAFF  181 (240)
Q Consensus       170 -~-~~~~~g~~~~~  181 (240)
                       + +++..|+++.+
T Consensus       233 ~~g~i~~~~~~~~~  246 (264)
T PRK14243        233 RYGYLVEFDRTEKI  246 (264)
T ss_pred             cCceEEEeCCHHHH
Confidence             5 77777766543

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.3e-27  Score=200.98  Aligned_cols=155  Identities=15%  Similarity=0.055  Sum_probs=116.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-----hCC------ceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-----DNG------RNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-----~~g------~~i~~~~~~~~~~~   73 (240)
                      +++++|+++.|     ++++||++.+||+++|+||||||||||+ ++|+|+.     ..|      +++...+. ...+ 
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~-   78 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFL-RCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALR-   78 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCCceEEEECCEecccCCH-HHHh-
Confidence            68899999998     8999999999999999999999999999 9999973     233      22221111 1112 


Q ss_pred             CCCeEEEccCceecceecCcchhHH---------------------Hh--h-------------------------chhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR---------------------QK--L-------------------------GDDA  105 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~---------------------~~--~-------------------------~~~l  105 (240)
                      ...+|++|+..+++ .++.++..+.                     ..  +                         ...+
T Consensus        79 ~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  157 (246)
T PRK14269         79 KNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL  157 (246)
T ss_pred             hhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence            23589999877665 3554443221                     00  0                         1115


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|+||||++      +..+.+.|+++.+  +.|||++|||++++          ..+||++++|++ ++...|++
T Consensus       158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~~----------~~~~d~i~~l~~G~i~~~g~~  225 (246)
T PRK14269        158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNMQQG----------KRVADYTAFFHLGELIEFGES  225 (246)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH----------HhhCcEEEEEECCEEEEECCH
Confidence            88999999999987      4578888888753  78999999999999          899999999999 88877776


Q ss_pred             ce
Q 026304          179 AF  180 (240)
Q Consensus       179 ~~  180 (240)
                      ..
T Consensus       226 ~~  227 (246)
T PRK14269        226 KE  227 (246)
T ss_pred             HH
Confidence            54

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.94  E-value=6.3e-27  Score=194.64  Aligned_cols=144  Identities=19%  Similarity=0.103  Sum_probs=108.7

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+.        ++|.++....  ...+ ...
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~p~~G~v~~~g~~~~~~~--~~~~-~~~   76 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLL-RILAGLARPDAGEVLWQGEPIRRQR--DEYH-QDL   76 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccch--HHhh-hhe
Confidence            58999999998     8999999999999999999999999999 9999972        2333332211  1111 224


Q ss_pred             eEEEccCceecceecCcchhHHHhh---------------------------------------chhhhccCcEEEEcCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL---------------------------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~~~p~lllLDEP  117 (240)
                      ++++|...+++.+++.++..+....                                       ...++.+|++++||||
T Consensus        77 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  156 (204)
T PRK13538         77 LYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP  156 (204)
T ss_pred             EEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            7888877776666666554332100                                       1125899999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      ++      +..+.++|+++++ .+.|||++|||++++          .++.+|++++
T Consensus       157 t~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~i----------~~~~~~~~~~  202 (204)
T PRK13538        157 FTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLPV----------ASDKVRKLRL  202 (204)
T ss_pred             CccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhhh----------ccCCceEEec
Confidence            87      4578888988876 689999999999999          7777787766

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.94  E-value=4.7e-27  Score=205.38  Aligned_cols=160  Identities=12%  Similarity=0.040  Sum_probs=115.9

Q ss_pred             ceEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEee-c-c-
Q 026304            9 AAVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMI-K-S-   67 (240)
Q Consensus         9 ~~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~-~-~-   67 (240)
                      ..|+++|++++|          ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++... . . 
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~   83 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMI-QLTNGLIISETGQTIVGDYAIPANLKKIK   83 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEccccccccc
Confidence            368999999877          6799999999999999999999999999 9999972        233333210 0 0 


Q ss_pred             chhcccCCCeEEEccCc--eecceecCcchhHHH-------------------hh------------------------c
Q 026304           68 SKDTRYAIDSVVTHDGA--KLPCWALPELTSFRQ-------------------KL------------------------G  102 (240)
Q Consensus        68 ~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~-------------------~~------------------------~  102 (240)
                      .........+|++|++.  +++ .++.++..+..                   .+                        .
T Consensus        84 ~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~la  162 (289)
T PRK13645         84 EVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALA  162 (289)
T ss_pred             cHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence            01111223589999752  232 24433332210                   00                        1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      +..++++|+++.++.|+|||++|||++++          ..+||++++|++ ++...
T Consensus       163 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~----------~~~~d~i~~l~~G~i~~~  232 (289)
T PRK13645        163 GIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQV----------LRIADEVIVMHEGKVISI  232 (289)
T ss_pred             HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEe
Confidence            12588999999999988      45788889888764589999999999999          899999999999 88777


Q ss_pred             CCcce
Q 026304          176 GKRAF  180 (240)
Q Consensus       176 g~~~~  180 (240)
                      |+++.
T Consensus       233 g~~~~  237 (289)
T PRK13645        233 GSPFE  237 (289)
T ss_pred             CCHHH
Confidence            77654

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.94  E-value=6.2e-27  Score=200.78  Aligned_cols=155  Identities=15%  Similarity=0.112  Sum_probs=114.2

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEcc
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      ++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+. .....+... .    +. ..+|++|+
T Consensus         3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~-~----~~-~i~~v~q~   75 (251)
T PRK09544          3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLV-RVVLGLVAPDEGVIKRN-G----KL-RIGYVPQK   75 (251)
T ss_pred             cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEEC-C----cc-CEEEeccc
Confidence            489999999998     8999999999999999999999999999 9999973 222223211 1    11 24788887


Q ss_pred             Cceecce--ecCcchh---------H---HHh-----------------------hchhhhccCcEEEEcCccC------
Q 026304           83 GAKLPCW--ALPELTS---------F---RQK-----------------------LGDDAYAKLDVIGIDEAQF------  119 (240)
Q Consensus        83 ~~~~~~~--~~~~~~~---------~---~~~-----------------------~~~~l~~~p~lllLDEP~~------  119 (240)
                      ..+++.+  ++.++..         .   ...                       +...++.+|++||||||++      
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~  155 (251)
T PRK09544         76 LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNG  155 (251)
T ss_pred             cccccccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHH
Confidence            6544332  2221110         0   000                       0122589999999999988      


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcce
Q 026304          120 FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAF  180 (240)
Q Consensus       120 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~  180 (240)
                      +..+.+.|+++.++.|.|||++|||++++          ..+||++++|++++...|+++.
T Consensus       156 ~~~l~~~L~~~~~~~g~tiiivsH~~~~i----------~~~~d~i~~l~~~i~~~g~~~~  206 (251)
T PRK09544        156 QVALYDLIDQLRRELDCAVLMVSHDLHLV----------MAKTDEVLCLNHHICCSGTPEV  206 (251)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEECCceEeeCCHHH
Confidence            45788889888763489999999999999          8999999999777666777654

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.94  E-value=4.7e-27  Score=216.57  Aligned_cols=161  Identities=17%  Similarity=0.116  Sum_probs=124.2

Q ss_pred             ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc------------hhCCceEEeecc
Q 026304            9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE------------SDNGRNIAMIKS   67 (240)
Q Consensus         9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl------------~~~g~~i~~~~~   67 (240)
                      ++|+++||++.|         ++||||++.+||++||+|.|||||||+. +.|.|+            .++|+++...+.
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a-~~i~gll~~~~~~~~G~I~~~g~dl~~l~~   82 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLA-LALMGLLPEGGRITSGEVILDGRDLLGLSE   82 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHH-HHHhccCCCCCcccceEEEECCcchhcCCH
Confidence            489999999998         7999999999999999999999999999 999997            234444444443


Q ss_pred             chh--cccCCCeEEEccCc--eecceecCcchh--------------------HHH---------------hh-ch----
Q 026304           68 SKD--TRYAIDSVVTHDGA--KLPCWALPELTS--------------------FRQ---------------KL-GD----  103 (240)
Q Consensus        68 ~~~--~~~~~~~~v~q~~~--~~~~~~~~~~~~--------------------~~~---------------~~-~~----  103 (240)
                      ...  .|...++++||++.  +-|.+++.+...                    +..               .+ ||    
T Consensus        83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR  162 (539)
T COG1123          83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR  162 (539)
T ss_pred             HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence            322  23344589999853  223333321110                    000               00 11    


Q ss_pred             -----hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          104 -----DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       104 -----~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                           .++.+|++||+||||.      +.+++++|+++.++.|+++|++|||+..+          ..+||||++|++ +
T Consensus       163 v~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv----------a~~aDrv~Vm~~G~  232 (539)
T COG1123         163 VMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV----------AELADRVVVMYKGE  232 (539)
T ss_pred             HHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH----------HHhcCeEEEEECCE
Confidence                 2589999999999987      56899999999988999999999999999          999999999999 9


Q ss_pred             eeccCCcce
Q 026304          172 CELCGKRAF  180 (240)
Q Consensus       172 ~~~~g~~~~  180 (240)
                      ++..|+++.
T Consensus       233 iVE~G~~~~  241 (539)
T COG1123         233 IVETGPTEE  241 (539)
T ss_pred             EEEecCHHH
Confidence            999998765

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=6.5e-27  Score=200.17  Aligned_cols=156  Identities=12%  Similarity=0.121  Sum_probs=115.6

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------chh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SKD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~~   70 (240)
                      +|+++|+++.|     ++|+||+|++||+++|+||||||||||+ ++|+|+..       .|. +.....       ...
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~~~~~~~~~~   80 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFL-RTLNRMNDLIPSVKIEGE-VLLDGQDIYKSDIDVN   80 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceE-EEECCEEccccccchH
Confidence            68999999998     8999999999999999999999999999 99999621       232 221110       001


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~  103 (240)
                      ......+|++|+..+++ .++.++..+..                    .+                           ..
T Consensus        81 ~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar  159 (250)
T PRK14240         81 QLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR  159 (250)
T ss_pred             HHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence            11223589999876665 45544332210                    00                           11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++|+||||++      +..+.++|+++.  .+.|||++|||++.+          ..+||++++|++ ++...|
T Consensus       160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~----------~~~~d~v~~l~~G~i~~~~  227 (250)
T PRK14240        160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDYTIVIVTHNMQQA----------SRISDKTAFFLNGEIVEFG  227 (250)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEEeCHHHH----------HhhCCEEEEEECCEEEEeC
Confidence            2588999999999988      457888888885  378999999999999          899999999998 887777


Q ss_pred             Ccce
Q 026304          177 KRAF  180 (240)
Q Consensus       177 ~~~~  180 (240)
                      +++.
T Consensus       228 ~~~~  231 (250)
T PRK14240        228 DTVD  231 (250)
T ss_pred             CHHH
Confidence            6554

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.94  E-value=5.4e-27  Score=194.88  Aligned_cols=143  Identities=20%  Similarity=0.161  Sum_probs=106.4

Q ss_pred             EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch--hcccCCCe
Q 026304           13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK--DTRYAIDS   77 (240)
Q Consensus        13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~--~~~~~~~~   77 (240)
                      ++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++.......  ..+....+
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~   79 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG   79 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence            46788877     8999999999999999999999999999 9999972        2333332221111  11122358


Q ss_pred             EEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLD  115 (240)
                      |++|+..+++..++.++..+...                   +                       ...++.+|++||||
T Consensus        80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD  159 (206)
T TIGR03608        80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD  159 (206)
T ss_pred             EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            99999888777777665543110                   0                       11258999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      ||++      +..+.++|+++.+ .|.|||++||+++..           .+||++++|
T Consensus       160 EPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-----------~~~d~i~~l  206 (206)
T TIGR03608       160 EPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPEVA-----------KQADRVIEL  206 (206)
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-----------hhcCEEEeC
Confidence            9988      4578999998876 589999999999865           579999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.94  E-value=5.7e-27  Score=199.00  Aligned_cols=155  Identities=21%  Similarity=0.179  Sum_probs=119.1

Q ss_pred             EEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304           11 VTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        11 l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      |+++|+++.|    ++++||+|.+||+++|+||||||||||+ ++|+|+.        ++|.++...+.   .+ ...++
T Consensus         1 l~~~~l~~~~~~~~l~~is~~i~~Ge~~~i~G~nG~GKStLl-~~l~G~~~p~~G~v~i~g~~~~~~~~---~~-~~i~~   75 (235)
T cd03299           1 LKVENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLL-ETIAGFIKPDSGKILLNGKDITNLPP---EK-RDISY   75 (235)
T ss_pred             CeeEeEEEEeCCceeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcCcCCh---hH-cCEEE
Confidence            4678899888    8999999999999999999999999999 9999972        33433322111   11 23589


Q ss_pred             EEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEEcC
Q 026304           79 VTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDE  116 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDE  116 (240)
                      ++|+..+++..++.++..+...                   +                       +..++.+|++++|||
T Consensus        76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  155 (235)
T cd03299          76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE  155 (235)
T ss_pred             EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence            9998887776666655442110                   0                       112588999999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++      +..+.++|+++..+.|.|||++||+++++          ..+||++++|++ ++...|+++.
T Consensus       156 Pt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  216 (235)
T cd03299         156 PFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA----------WALADKVAIMLNGKLIQVGKPEE  216 (235)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEecCHHH
Confidence            988      45788889988764589999999999999          899999999998 8877776553

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.94  E-value=1e-26  Score=193.29  Aligned_cols=154  Identities=16%  Similarity=0.148  Sum_probs=115.5

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----CCceEEeeccc----hhc
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----NGRNIAMIKSS----KDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----~g~~i~~~~~~----~~~   71 (240)
                      .+.++|++|.|         ++++||++++|++++|+||||||||||+ ++|+|+..     .|. +......    ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~~~~G~-i~i~g~~~~~~~~~   80 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLL-KALANRTEGNVSVEGD-IHYNGIPYKEFAEK   80 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHH-HHhcccCCCCCCcceE-EEECCEECccchhh
Confidence            57899999998         7899999999999999999999999999 99999733     332 2211110    011


Q ss_pred             ccCCCeEEEccCceecceecCcchhHHHh-------------------hchhhhccCcEEEEcCccC------hHHHHHH
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------LGDDAYAKLDVIGIDEAQF------FEDLYEF  126 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~~~~l~~~p~lllLDEP~~------~~~i~~~  126 (240)
                      .....+|++|+..+++.+++.++..+...                   ++..++.+|++||||||++      +..++++
T Consensus        81 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~  160 (202)
T cd03233          81 YPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKC  160 (202)
T ss_pred             hcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHH
Confidence            12235899998888888888877665321                   1233689999999999988      4578999


Q ss_pred             HHHHHhcCCCEEEEE-ecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          127 CCNAADHDGKTVVVA-GLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       127 l~~l~~~~g~tvi~v-tHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ++++.++.+.|++++ +|+.+.+          ..+||++++|++ ++...
T Consensus       161 l~~~~~~~~~t~ii~~~h~~~~~----------~~~~d~i~~l~~G~i~~~  201 (202)
T cd03233         161 IRTMADVLKTTTFVSLYQASDEI----------YDLFDKVLVLYEGRQIYY  201 (202)
T ss_pred             HHHHHHhCCCEEEEEEcCCHHHH----------HHhCCeEEEEECCEEEec
Confidence            999876446665555 5666888          899999999998 76543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=7.9e-27  Score=199.54  Aligned_cols=156  Identities=15%  Similarity=0.123  Sum_probs=115.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccchhc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSKDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~~~   71 (240)
                      +|+++|+++.|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|.      ++....+....
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   81 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLL-RCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL   81 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHH-HHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence            68999999998     9999999999999999999999999999 99999732       232      11100000111


Q ss_pred             ccCCCeEEEccCceecceecCcchhHH--------------------Hhh---------------------------chh
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL---------------------------GDD  104 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~---------------------------~~~  104 (240)
                      + ...+|++|+..+++ .++.++..+.                    ..+                           ...
T Consensus        82 ~-~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  159 (249)
T PRK14253         82 R-IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART  159 (249)
T ss_pred             H-hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence            2 23589999877665 3443332210                    000                           112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++||||||++      +..+.++|+++++  +.|||++||+++++          ..+||++++|++ ++...|+
T Consensus       160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~----------~~~~d~i~~l~~G~i~~~g~  227 (249)
T PRK14253        160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQQA----------RRISDRTAFFLMGELVEHDD  227 (249)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHHHH----------HHhCCEEEEEECCEEEEeCC
Confidence            588999999999988      4578889998865  48999999999999          899999999999 8887777


Q ss_pred             cce
Q 026304          178 RAF  180 (240)
Q Consensus       178 ~~~  180 (240)
                      ++.
T Consensus       228 ~~~  230 (249)
T PRK14253        228 TQV  230 (249)
T ss_pred             HHH
Confidence            654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.94  E-value=6.7e-27  Score=198.71  Aligned_cols=141  Identities=19%  Similarity=0.072  Sum_probs=102.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEE-ccCceecceec
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVT-HDGAKLPCWAL   91 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~-q~~~~~~~~~~   91 (240)
                      ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...  .. ......+|++ |...+++.+++
T Consensus        37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~~~~~--~~-~~~~~i~~~~~~~~~~~~~~tv  112 (236)
T cd03267          37 LKGISFTIEKGEIVGFIGPNGAGKTTTL-KILSGLLQPTSGEVRVAGLVPWKR--RK-KFLRRIGVVFGQKTQLWWDLPV  112 (236)
T ss_pred             eeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceEEEECCEEcccc--ch-hhcccEEEEcCCccccCCCCcH
Confidence            8999999999999999999999999999 9999972        223222110  11 1112347776 44555555555


Q ss_pred             CcchhHHHh-------------------h-----------------------chhhhccCcEEEEcCccC------hHHH
Q 026304           92 PELTSFRQK-------------------L-----------------------GDDAYAKLDVIGIDEAQF------FEDL  123 (240)
Q Consensus        92 ~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllLDEP~~------~~~i  123 (240)
                      .++..+...                   +                       +..++.+|++|+||||++      +..+
T Consensus       113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l  192 (236)
T cd03267         113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI  192 (236)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence            544322110                   0                       112588999999999988      4578


Q ss_pred             HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          124 YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       124 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      .++|++++++.+.|||++|||++++          ..+||++++|++ ++...
T Consensus       193 ~~~l~~~~~~~~~tiiivsH~~~~~----------~~~~d~i~~l~~G~i~~~  235 (236)
T cd03267         193 RNFLKEYNRERGTTVLLTSHYMKDI----------EALARRVLVIDKGRLLYD  235 (236)
T ss_pred             HHHHHHHHhcCCCEEEEEecCHHHH----------HHhCCEEEEEeCCEEEec
Confidence            8999998764589999999999999          899999999988 66543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.94  E-value=4.2e-27  Score=186.80  Aligned_cols=152  Identities=17%  Similarity=0.128  Sum_probs=124.0

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--   70 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--   70 (240)
                      .|+++++++..         |++|+|.|++||.++|+||+|||||||| -+++|+        .+.|+++..+....+  
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl-~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~   84 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLL-AVLAGLDDPSSGEVRLLGQPLHKLDEDARAA   84 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHH-HHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence            68899988865         8999999999999999999999999999 999998        345666555543322  


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHHhhc------------------------------------------hhhhcc
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKLG------------------------------------------DDAYAK  108 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~l~~~  108 (240)
                      .|.+..++|||...+.+.++..+|..+...+.                                          ..++..
T Consensus        85 ~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~  164 (228)
T COG4181          85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGR  164 (228)
T ss_pred             hhccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCC
Confidence            23334599999999999999888876644321                                          125789


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      |++|+.||||-      -+++.+++..+..+.|.|.++||||+..+           .-|+|++.|.+ +++
T Consensus       165 P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA-----------~Rc~R~~r~~~G~l~  225 (228)
T COG4181         165 PDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLA-----------ARCDRQLRLRSGRLV  225 (228)
T ss_pred             CCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHH-----------Hhhhheeeeecceec
Confidence            99999999977      24799999999888999999999999887           67999999988 665

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.94  E-value=1.6e-26  Score=197.33  Aligned_cols=157  Identities=15%  Similarity=0.126  Sum_probs=111.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h-CC------ceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D-NG------RNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~-~g------~~i~~~~~~~~~~~~   74 (240)
                      ||+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.   . .|      .++...++... +..
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~-~~~   78 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLELSPEDR-AGE   78 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHcCCccCCCCceEEEECCCccccCCHHHH-hhc
Confidence            58999999998     8999999999999999999999999999 9999972   2 23      22211111111 112


Q ss_pred             CCeEEEccCceecceec-------C------------cchhHH---H-------------------h----------hch
Q 026304           75 IDSVVTHDGAKLPCWAL-------P------------ELTSFR---Q-------------------K----------LGD  103 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~-------~------------~~~~~~---~-------------------~----------~~~  103 (240)
                      ..+|++|+...++..+.       .            +...+.   .                   .          ++.
T Consensus        79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar  158 (248)
T PRK09580         79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ  158 (248)
T ss_pred             ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence            24788887543332110       0            000000   0                   0          112


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeecc
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCELC  175 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~~  175 (240)
                      .++.+|++|+||||++      ...+.++|+++++ .+.|||++|||++++          ..+ ||++++|++ ++...
T Consensus       159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~~----------~~~~~d~i~~l~~g~i~~~  227 (248)
T PRK09580        159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRIL----------DYIKPDYVHVLYQGRIVKS  227 (248)
T ss_pred             HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HhhhCCEEEEEECCeEEEe
Confidence            3689999999999988      4578888888876 689999999999998          776 899999998 88777


Q ss_pred             CCcc
Q 026304          176 GKRA  179 (240)
Q Consensus       176 g~~~  179 (240)
                      |+++
T Consensus       228 g~~~  231 (248)
T PRK09580        228 GDFT  231 (248)
T ss_pred             CCHH
Confidence            7654

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.94  E-value=6.1e-27  Score=218.84  Aligned_cols=157  Identities=15%  Similarity=0.099  Sum_probs=117.4

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc------hhcccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS------KDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~------~~~~~~   74 (240)
                      +|+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+..    .|. +......      ...+..
T Consensus         1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl-~~i~G~~~~~~~~G~-i~~~g~~~~~~~~~~~~~~   78 (500)
T TIGR02633         1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLM-KILSGVYPHGTWDGE-IYWSGSPLKASNIRDTERA   78 (500)
T ss_pred             CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeE-EEECCEECCCCCHHHHHhC
Confidence            47899999998     8999999999999999999999999999 99999742    333 2211110      011112


Q ss_pred             CCeEEEccCceecceecCcchhHH-----------------------Hhh------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~------------------------~~~l~~  107 (240)
                      ..+|++|+..+++.+++.++..+.                       ..+                        +..++.
T Consensus        79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~  158 (500)
T TIGR02633        79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNK  158 (500)
T ss_pred             CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhh
Confidence            358999987666554443332210                       000                        112588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      +|++||||||++      ...+.++|+++++ +|.|||++|||++++          ..+||++++|++ ++...++++
T Consensus       159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~~~----------~~~~d~i~~l~~G~i~~~~~~~  226 (500)
T TIGR02633       159 QARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEV----------KAVCDTICVIRDGQHVATKDMS  226 (500)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH----------HHhCCEEEEEeCCeEeeecCcc
Confidence            999999999988      4578999999876 699999999999999          899999999998 877766654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=6.2e-27  Score=220.23  Aligned_cols=163  Identities=13%  Similarity=0.031  Sum_probs=121.5

Q ss_pred             CceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEe
Q 026304            8 PAAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAM   64 (240)
Q Consensus         8 ~~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~   64 (240)
                      .+||+++|+++.|                ++++||+|++|++++|+||||||||||+ ++|+|+.       ++|+++..
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~~~G~i~~~g~~i~~  351 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTG-LALLRLINSQGEIWFDGQPLHN  351 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCcEEEECCEEccc
Confidence            4589999999865                6899999999999999999999999999 9999973       33444332


Q ss_pred             eccchh-cccCCCeEEEccC--ceecceecCcchhHHH---------------------hh-------------------
Q 026304           65 IKSSKD-TRYAIDSVVTHDG--AKLPCWALPELTSFRQ---------------------KL-------------------  101 (240)
Q Consensus        65 ~~~~~~-~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~---------------------~~-------------------  101 (240)
                      .+.... ......+|++|+.  .+++.+++.+++.+..                     .+                   
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence            221111 1112358999986  3555555554443210                     00                   


Q ss_pred             -----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          102 -----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       102 -----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                           +..++.+|++||||||++      +..++++|++++++.|.|||++|||++++          ..+||++++|++
T Consensus       432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~----------~~~~d~i~~l~~  501 (529)
T PRK15134        432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVV----------RALCHQVIVLRQ  501 (529)
T ss_pred             HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH----------HHhcCeEEEEEC
Confidence                 111588999999999988      45789999999864589999999999999          899999999999


Q ss_pred             -eeeccCCccee
Q 026304          171 -RCELCGKRAFF  181 (240)
Q Consensus       171 -~~~~~g~~~~~  181 (240)
                       ++...|+++.+
T Consensus       502 G~i~~~~~~~~~  513 (529)
T PRK15134        502 GEVVEQGDCERV  513 (529)
T ss_pred             CEEEEEcCHHHH
Confidence             88877776543

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.94  E-value=8.9e-27  Score=202.03  Aligned_cols=160  Identities=15%  Similarity=0.117  Sum_probs=116.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----------CCceEEeeccc-----h
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----------NGRNIAMIKSS-----K   69 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----------~g~~i~~~~~~-----~   69 (240)
                      ||+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+..          .|. +......     .
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~laG~~~p~~~~~~~~~~G~-i~~~g~~~~~~~~   78 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLL-KALAGDLTGGGAPRGARVTGD-VTLNGEPLAAIDA   78 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCcccccccCCceE-EEECCEEcccCCH
Confidence            58999999998     8999999999999999999999999999 99999732          232 2211100     0


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHH-----------------------Hhh-----------------------ch
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-----------------------GD  103 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-----------------------~~  103 (240)
                      ..+....+|++|+...+..+++.+++.+.                       ..+                       ..
T Consensus        79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar  158 (272)
T PRK13547         79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR  158 (272)
T ss_pred             HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence            11112347889876543334444332210                       000                       01


Q ss_pred             hhh---------ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          104 DAY---------AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       104 ~l~---------~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      .++         .+|++||||||++      +..+.++|+++.++.|.|||++|||++++          ..+||++++|
T Consensus       159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~----------~~~~d~i~~l  228 (272)
T PRK13547        159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLA----------ARHADRIAML  228 (272)
T ss_pred             HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH----------HHhCCEEEEE
Confidence            135         4999999999988      45789999998764489999999999999          8999999999


Q ss_pred             cc-eeeccCCccee
Q 026304          169 TA-RCELCGKRAFF  181 (240)
Q Consensus       169 ~~-~~~~~g~~~~~  181 (240)
                      ++ ++...|+++.+
T Consensus       229 ~~G~i~~~g~~~~~  242 (272)
T PRK13547        229 ADGAIVAHGAPADV  242 (272)
T ss_pred             ECCeEEEecCHHHH
Confidence            99 88877876543

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.1e-26  Score=201.80  Aligned_cols=159  Identities=18%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccc------h
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSS------K   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~------~   69 (240)
                      .++|+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|. +......      .
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~-i~~~g~~i~~~~~~   96 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFL-RTLNRMNDKVSGYRYSGD-VLLGGRSIFNYRDV   96 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhccCCcCCCCCCceE-EEECCEEccccchh
Confidence            4589999999999     8999999999999999999999999999 99999732       332 2211100      0


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~  102 (240)
                      .......+|++|+..+++ .++.++..+..                    .+                           +
T Consensus        97 ~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA  175 (276)
T PRK14271         97 LEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA  175 (276)
T ss_pred             HHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence            011123589999876665 45544332110                    00                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++||||||++      +..+.+.|+++.+  +.|||++|||++++          ..+|||+++|++ ++...
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~~~----------~~~~dri~~l~~G~i~~~  243 (276)
T PRK14271        176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQA----------ARISDRAALFFDGRLVEE  243 (276)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEe
Confidence            12588999999999987      4578888888865  48999999999999          899999999999 88887


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       244 g~~~~~  249 (276)
T PRK14271        244 GPTEQL  249 (276)
T ss_pred             CCHHHH
Confidence            876654

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=201.16  Aligned_cols=160  Identities=14%  Similarity=0.058  Sum_probs=118.5

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCce------EEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRN------IAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~------i~~~~~~~   69 (240)
                      ..+|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.       ..|.-      +...+...
T Consensus        23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl-~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~  101 (272)
T PRK14236         23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLL-RCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV  101 (272)
T ss_pred             CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence            3589999999998     8999999999999999999999999999 9999973       23432      11100000


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH--------------------hh---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------KL---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~---------------------------~  102 (240)
                      .......+|++|+..+++. ++.++..+..                    .+                           +
T Consensus       102 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la  180 (272)
T PRK14236        102 AELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIA  180 (272)
T ss_pred             HHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHH
Confidence            1111235899998776653 5544332210                    00                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..++.+|++|+||||++      +..+.++|+++++  +.|||++||+++++          ..+||++++|++ ++...
T Consensus       181 ral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~~----------~~~~d~i~~l~~G~i~~~  248 (272)
T PRK14236        181 RAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNMQQA----------ARVSDYTAFMYMGKLVEY  248 (272)
T ss_pred             HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCHHHH----------HhhCCEEEEEECCEEEec
Confidence            12588999999999988      4578899988864  58999999999999          899999999999 88877


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       249 g~~~~~  254 (272)
T PRK14236        249 GDTDTL  254 (272)
T ss_pred             CCHHHH
Confidence            776543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.94  E-value=4.3e-27  Score=201.38  Aligned_cols=156  Identities=18%  Similarity=0.150  Sum_probs=112.7

Q ss_pred             EEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCCCeEEEccC
Q 026304           12 TTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAIDSVVTHDG   83 (240)
Q Consensus        12 ~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~~~~v~q~~   83 (240)
                      +++||++.. |+++||++++|++++|+||||||||||+ ++|+|+.       ++|+++...++..  +....+|++|+.
T Consensus         2 ~~~~l~~~~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl-~~l~Gl~~~~G~i~~~g~~i~~~~~~~--~~~~i~~v~q~~   78 (248)
T PRK03695          2 QLNDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLL-ARMAGLLPGSGSIQFAGQPLEAWSAAE--LARHRAYLSQQQ   78 (248)
T ss_pred             cccccchhceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCeEEEECCEecCcCCHHH--HhhheEEecccC
Confidence            466777655 8999999999999999999999999999 9999973       2333332211111  112247889876


Q ss_pred             ceecceecCcchhHH------------------Hhh-----------------------chhhhc-------cCcEEEEc
Q 026304           84 AKLPCWALPELTSFR------------------QKL-----------------------GDDAYA-------KLDVIGID  115 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~------------------~~~-----------------------~~~l~~-------~p~lllLD  115 (240)
                      ..+..+++.++..+.                  ..+                       ...++.       +|++||||
T Consensus        79 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD  158 (248)
T PRK03695         79 TPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD  158 (248)
T ss_pred             ccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence            555444444332221                  000                       111354       67999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||++      +..+.++|+++++ +|.|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       159 EPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  220 (248)
T PRK03695        159 EPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHT----------LRHADRVWLLKQGKLLASGRRDEV  220 (248)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence            9988      4578899998876 689999999999999          899999999999 88888876543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.94  E-value=1.1e-26  Score=214.16  Aligned_cols=162  Identities=13%  Similarity=0.056  Sum_probs=123.9

Q ss_pred             CCceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceE
Q 026304            7 KPAAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNI   62 (240)
Q Consensus         7 ~~~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i   62 (240)
                      ..++++++||++.|                ++||||++.+||+++|+|+||||||||. |+|+|+        .++|.+ 
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTla-r~i~gL~~P~~G~i~~~g~~-  354 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLA-RILAGLLPPSSGSIIFDGQD-  354 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEEeCcc-
Confidence            34689999999987                5699999999999999999999999999 999998        234444 


Q ss_pred             Eeeccch-hcccCCCeEEEccCc--eecceecCcchhHHHh---------------------------------------
Q 026304           63 AMIKSSK-DTRYAIDSVVTHDGA--KLPCWALPELTSFRQK---------------------------------------  100 (240)
Q Consensus        63 ~~~~~~~-~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~~---------------------------------------  100 (240)
                      ....... ........++||++.  +.|..|+.+.+.-...                                       
T Consensus       355 ~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQ  434 (539)
T COG1123         355 LDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQ  434 (539)
T ss_pred             cccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcch
Confidence            2121111 111123478999763  5566666533211100                                       


Q ss_pred             -----hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          101 -----LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       101 -----~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                           ++..++.+|++|++|||++      +.+++++|+++.++.|.|.+++|||+.++          ..+||||++|+
T Consensus       435 rQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV----------~~i~drv~vm~  504 (539)
T COG1123         435 RQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVV----------RYIADRVAVMY  504 (539)
T ss_pred             hHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHH----------HhhCceEEEEE
Confidence                 0123689999999999988      56899999999988899999999999999          99999999999


Q ss_pred             c-eeeccCCcce
Q 026304          170 A-RCELCGKRAF  180 (240)
Q Consensus       170 ~-~~~~~g~~~~  180 (240)
                      . +++.+|+.+.
T Consensus       505 ~G~iVE~G~~~~  516 (539)
T COG1123         505 DGRIVEEGPTEK  516 (539)
T ss_pred             CCeEEEeCCHHH
Confidence            9 9999996553

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.6e-26  Score=221.10  Aligned_cols=163  Identities=13%  Similarity=0.062  Sum_probs=122.0

Q ss_pred             CceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEE-------
Q 026304            8 PAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIA-------   63 (240)
Q Consensus         8 ~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~-------   63 (240)
                      .+||+++|++++|         +++|||++++||+++|+||||||||||+ ++|+|+.        ++|..+.       
T Consensus        10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl-~~l~Gll~p~~G~i~~~g~~~~~~~~~~~   88 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTA-LALMRLLEQAGGLVQCDKMLLRRRSRQVI   88 (623)
T ss_pred             CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCeEEEECCEEecccccccc
Confidence            4589999999987         7799999999999999999999999999 9999983        1222110       


Q ss_pred             ee---ccch--hcccCCCeEEEccC--ceecceecCcchhHHHh--------------------h---------------
Q 026304           64 MI---KSSK--DTRYAIDSVVTHDG--AKLPCWALPELTSFRQK--------------------L---------------  101 (240)
Q Consensus        64 ~~---~~~~--~~~~~~~~~v~q~~--~~~~~~~~~~~~~~~~~--------------------~---------------  101 (240)
                      ..   +...  ..+....+|++|++  .+++.+++.+++.+...                    +               
T Consensus        89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~  168 (623)
T PRK10261         89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ  168 (623)
T ss_pred             ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence            00   1000  11112358999986  45666666554432100                    0               


Q ss_pred             -----------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304          102 -----------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus       102 -----------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                                 +..++.+|++|||||||+      +.+++++++++.++.|+|||++|||++++          ..+|||
T Consensus       169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~----------~~~adr  238 (623)
T PRK10261        169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVV----------AEIADR  238 (623)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCE
Confidence                       111588999999999988      45799999999864599999999999999          999999


Q ss_pred             eeeecc-eeeccCCccee
Q 026304          165 VTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       165 i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|++ +++..|+++.+
T Consensus       239 i~vl~~G~i~~~g~~~~~  256 (623)
T PRK10261        239 VLVMYQGEAVETGSVEQI  256 (623)
T ss_pred             EEEeeCCeecccCCHHHh
Confidence            999999 88888876543

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.94  E-value=1.1e-26  Score=195.57  Aligned_cols=147  Identities=20%  Similarity=0.195  Sum_probs=108.2

Q ss_pred             eEEEcceeEee------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEee----------
Q 026304           10 AVTTNQVNSGR------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMI----------   65 (240)
Q Consensus        10 ~l~~~~ls~~~------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~----------   65 (240)
                      ||+++|++++|            ++|+||+|.+||+++|+||||||||||+ ++|+|+.  ..|. +...          
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~-i~~~~~g~~~~~~~   78 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLL-KSLYANYLPDSGR-ILVRHEGAWVDLAQ   78 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCe-EEEecCCCccchhh
Confidence            57889998766            7899999999999999999999999999 9999983  2333 2211          


Q ss_pred             -ccch--hcccCCCeEEEccCceecceecCcchhHHH------------h-------h----------------------
Q 026304           66 -KSSK--DTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------K-------L----------------------  101 (240)
Q Consensus        66 -~~~~--~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------~-------~----------------------  101 (240)
                       +...  ..+....+|++|+..+++.+++.++..+..            .       +                      
T Consensus        79 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl  158 (224)
T TIGR02324        79 ASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV  158 (224)
T ss_pred             cCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence             1100  011223589999887776655544432210            0       0                      


Q ss_pred             --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                        ...++.+|++|+||||++      ...+.++|+++++ .|.|||++|||++++          ..+||+++.+.
T Consensus       159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~~~----------~~~~d~i~~~~  223 (224)
T TIGR02324       159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEEVR----------ELVADRVMDVT  223 (224)
T ss_pred             HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhcceeEecC
Confidence              112588999999999988      4578899999876 689999999999999          88999998764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.94  E-value=2.6e-26  Score=197.05  Aligned_cols=161  Identities=11%  Similarity=0.048  Sum_probs=116.5

Q ss_pred             ceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch------hCCceEEeeccc---hhcccCC
Q 026304            9 AAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES------DNGRNIAMIKSS---KDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~------~~g~~i~~~~~~---~~~~~~~   75 (240)
                      .+|+++|++++|    ++++||++++||+++|+||||||||||+ ++|+|+.      ..|. +......   ...+...
T Consensus         3 ~~l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~~~~~~~~G~-i~~~g~~i~~~~~~~~~   80 (254)
T PRK10418          3 QQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTC-AAALGILPAGVRQTAGR-VLLDGKPVAPCALRGRK   80 (254)
T ss_pred             cEEEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCcCCE-EEECCeeccccccccce
Confidence            479999999988    8999999999999999999999999999 9999973      2242 2211110   0111123


Q ss_pred             CeEEEccCc--eecceecCcchhH-----------------HHh--------------------------hchhhhccCc
Q 026304           76 DSVVTHDGA--KLPCWALPELTSF-----------------RQK--------------------------LGDDAYAKLD  110 (240)
Q Consensus        76 ~~~v~q~~~--~~~~~~~~~~~~~-----------------~~~--------------------------~~~~l~~~p~  110 (240)
                      .+|++|+..  +.+..++.++...                 ...                          +...++.+|+
T Consensus        81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~  160 (254)
T PRK10418         81 IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAP  160 (254)
T ss_pred             EEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCC
Confidence            588999863  2222222111100                 000                          0122589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      +..+.++|++++++.|.|||++||+++.+          ..+||++++|++ ++...|+++.+
T Consensus       161 lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~~  228 (254)
T PRK10418        161 FIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVV----------ARLADDVAVMSHGRIVEQGDVETL  228 (254)
T ss_pred             EEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHH----------HHhCCEEEEEECCEEEEecCHHHH
Confidence            999999987      45788999988764589999999999999          899999999999 88877776543

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.1e-26  Score=201.00  Aligned_cols=159  Identities=15%  Similarity=0.121  Sum_probs=116.3

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------   67 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------   67 (240)
                      ..++|+++|+++.|     ++++||+|++|++++|+||||||||||+ ++|+|+..       .|. +.....       
T Consensus        36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~l~Gl~~~~~~~p~~G~-I~i~G~~i~~~~~  113 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFL-RCINRMNDLIDAARVEGE-LTFRGKNVYDADV  113 (285)
T ss_pred             CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCcccCCCCceE-EEECCEEcccccc
Confidence            34589999999998     8999999999999999999999999999 99999742       332 221110       


Q ss_pred             chhcccCCCeEEEccCceecceecCcchhHHH------------------hh---------------------------c
Q 026304           68 SKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ------------------KL---------------------------G  102 (240)
Q Consensus        68 ~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~------------------~~---------------------------~  102 (240)
                      .........+|++|+..+++. ++.++..+..                  .+                           .
T Consensus       114 ~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LA  192 (285)
T PRK14254        114 DPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIA  192 (285)
T ss_pred             chHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHH
Confidence            001112235899998766653 5544332210                  00                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee-eecc-eeec
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT-KLTA-RCEL  174 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~-~l~~-~~~~  174 (240)
                      ..++.+|++||||||++      +..+.++|+++++  +.|||++|||++++          ..+|||++ +|++ ++..
T Consensus       193 raL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~~i----------~~~~dri~v~l~~G~i~~  260 (285)
T PRK14254        193 RAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQQA----------ARISDKTAVFLTGGELVE  260 (285)
T ss_pred             HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HhhcCEEEEEeeCCEEEE
Confidence            12588999999999988      4578889998875  37999999999999          89999975 5677 8877


Q ss_pred             cCCcce
Q 026304          175 CGKRAF  180 (240)
Q Consensus       175 ~g~~~~  180 (240)
                      .|+++.
T Consensus       261 ~g~~~~  266 (285)
T PRK14254        261 FDDTDK  266 (285)
T ss_pred             eCCHHH
Confidence            776544

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.94  E-value=1.2e-26  Score=188.01  Aligned_cols=143  Identities=20%  Similarity=0.126  Sum_probs=107.0

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+.. . +...
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~   77 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLL-KLLLRLYDPTSGEILIDGVDLRDLDLE-S-LRKN   77 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhhhcCHH-H-HHhh
Confidence            4678888876       7899999999999999999999999999 9999972        233333221111 1 1123


Q ss_pred             CeEEEccCceecceecCcch-h----HHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304           76 DSVVTHDGAKLPCWALPELT-S----FRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~-~----~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      .+|++|+..+++ .++.++. .    ....+...++.+|++|+||||++      +..+.++|+++.+  +.|||++|||
T Consensus        78 i~~~~~~~~~~~-~t~~e~lLS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~  154 (171)
T cd03228          78 IAYVPQDPFLFS-GTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHR  154 (171)
T ss_pred             EEEEcCCchhcc-chHHHHhhCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecC
Confidence            588999887765 4666553 1    11123455789999999999987      4578888888853  6999999999


Q ss_pred             hhhhhcccchHHHHHhhccceeeecc
Q 026304          145 GDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       145 ~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++++          .. ||++++|++
T Consensus       155 ~~~~----------~~-~d~~~~l~~  169 (171)
T cd03228         155 LSTI----------RD-ADRIIVLDD  169 (171)
T ss_pred             HHHH----------Hh-CCEEEEEcC
Confidence            9998          76 999999875

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=205.01  Aligned_cols=159  Identities=13%  Similarity=0.092  Sum_probs=120.0

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CC------ceEEeeccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NG------RNIAMIKSS   68 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g------~~i~~~~~~   68 (240)
                      .+|+++|++++|       |+++||+|++||+++|+||||||||||+ ++|+|+..       .|      +++......
T Consensus        79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl-~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFL-RNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEccccccc
Confidence            489999999988       8999999999999999999999999999 99999741       33      222111101


Q ss_pred             hhcccCCCeEEEccCceecceecCcchhHHH--------------------h---------------------------h
Q 026304           69 KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ--------------------K---------------------------L  101 (240)
Q Consensus        69 ~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~---------------------------~  101 (240)
                      .....+..+|++|++.+++ .++.+|+.+..                    .                           +
T Consensus       158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L  236 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI  236 (329)
T ss_pred             hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence            0111223589999987764 35544443210                    0                           0


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +..++.+|++||||||++      ...+.+.|+++.+  +.|||++||+++++          ..+||||++|++ ++..
T Consensus       237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~~i----------~~~~Driivl~~G~i~e  304 (329)
T PRK14257        237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMAQA----------QRISDETVFFYQGWIEE  304 (329)
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEE
Confidence            112589999999999988      3468888888864  58999999999999          889999999999 9999


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|++..+
T Consensus       305 ~g~~~~l  311 (329)
T PRK14257        305 AGETKTI  311 (329)
T ss_pred             eCCHHHH
Confidence            9998764

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=8.7e-27  Score=217.39  Aligned_cols=155  Identities=16%  Similarity=0.106  Sum_probs=115.1

Q ss_pred             EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304           13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      ++|++++|     ++|+||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++....+ ...+|+
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~~v   78 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLL-KCLFGIYQKDSGSILFQGKEIDFKSSKEALE-NGISMV   78 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEECCEECCCCCHHHHHh-CCEEEE
Confidence            36788887     8999999999999999999999999999 9999973        2343332211111112 235899


Q ss_pred             EccCceecceecCcchhHH---------------Hh-------h-----------------------chhhhccCcEEEE
Q 026304           80 THDGAKLPCWALPELTSFR---------------QK-------L-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~---------------~~-------~-----------------------~~~l~~~p~lllL  114 (240)
                      +|+..+++.+++.++..+.               ..       +                       +..++.+|++|||
T Consensus        79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL  158 (491)
T PRK10982         79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM  158 (491)
T ss_pred             ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            9987666555554432210               00       0                       1125889999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |||++      ...+.++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       159 DEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~  220 (491)
T PRK10982        159 DEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKMEEI----------FQLCDEITILRDGQWIATQPLAG  220 (491)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEeecChhh
Confidence            99988      4578899999876 699999999999999          899999999999 8877776543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.94  E-value=1.5e-26  Score=217.22  Aligned_cols=157  Identities=13%  Similarity=0.014  Sum_probs=116.7

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---h-CCceEEee----------------
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---D-NGRNIAMI----------------   65 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~-~g~~i~~~----------------   65 (240)
                      |+++|++++|     ++++||++.+|++++|+||||||||||+ ++|+|+.   . .|. +...                
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~~~p~~G~-i~~~~~~~~~~~~~~~~~~~   78 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLM-HVLRGMDQYEPTSGR-IIYHVALCEKCGYVERPSKV   78 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhcccCCCCceE-EEEecccccccccccccccc
Confidence            4789999998     8999999999999999999999999999 9999973   2 332 2111                


Q ss_pred             -------c--------------cch-hcccCCCeEEEcc-CceecceecCcchhHHHh-------------------h--
Q 026304           66 -------K--------------SSK-DTRYAIDSVVTHD-GAKLPCWALPELTSFRQK-------------------L--  101 (240)
Q Consensus        66 -------~--------------~~~-~~~~~~~~~v~q~-~~~~~~~~~~~~~~~~~~-------------------~--  101 (240)
                             .              ... .......+|++|+ ..+++.+++.+++.+...                   +  
T Consensus        79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl  158 (520)
T TIGR03269        79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL  158 (520)
T ss_pred             ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence                   0              000 0011235899996 556665665554432110                   0  


Q ss_pred             ---------------------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccch
Q 026304          102 ---------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGS  154 (240)
Q Consensus       102 ---------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~  154 (240)
                                           +..++.+|++||||||++      ...++++|++++++.|.|||++|||++++      
T Consensus       159 ~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~------  232 (520)
T TIGR03269       159 SHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVI------  232 (520)
T ss_pred             hhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHH------
Confidence                                 112588999999999988      45788999998764689999999999999      


Q ss_pred             HHHHHhhccceeeecc-eeeccCCcc
Q 026304          155 VLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       155 ~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                          ..+||++++|++ ++...|+++
T Consensus       233 ----~~~~d~i~~l~~G~i~~~g~~~  254 (520)
T TIGR03269       233 ----EDLSDKAIWLENGEIKEEGTPD  254 (520)
T ss_pred             ----HHhcCEEEEEeCCEEeeecCHH
Confidence                899999999998 877666543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.94  E-value=9.6e-27  Score=189.98  Aligned_cols=146  Identities=24%  Similarity=0.203  Sum_probs=103.7

Q ss_pred             EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304           12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      +++|++++|     ++++||++.+|++++|+||||||||||+ ++|+|+.        ++|.++....+. ..+ ...+|
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl-~~i~G~~~~~~G~v~~~g~~~~~~~~~-~~~-~~i~~   77 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLL-KTLAGLLKPSSGEILLDGKDLASLSPK-ELA-RKIAY   77 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCcCCHH-HHH-HHHhH
Confidence            467888887     8999999999999999999999999999 9999972        233333221111 111 12356


Q ss_pred             EEccCceeccee-----------cCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEE
Q 026304           79 VTHDGAKLPCWA-----------LPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVA  141 (240)
Q Consensus        79 v~q~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~v  141 (240)
                      ++|   ....+.           +.........+...++.+|++++||||++      ...+.+.|.+++++.+.|+|++
T Consensus        78 ~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~  154 (180)
T cd03214          78 VPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMV  154 (180)
T ss_pred             HHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            655   111111           11111112223455799999999999987      4578888988876338999999


Q ss_pred             ecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          142 GLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       142 tHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      ||+++++          ..+||++++|++ ++.
T Consensus       155 sh~~~~~----------~~~~d~~~~l~~g~i~  177 (180)
T cd03214         155 LHDLNLA----------ARYADRVILLKDGRIV  177 (180)
T ss_pred             eCCHHHH----------HHhCCEEEEEECCEEE
Confidence            9999999          899999999988 654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK04296 thymidine kinase; Provisional

Probab=99.94  E-value=1.8e-25  Score=184.12  Aligned_cols=180  Identities=31%  Similarity=0.509  Sum_probs=137.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL  109 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p  109 (240)
                      .|.++.+.||+|+||||++++.+..+...|+.+..+++..+.+.....+..+.+..++.........+...+.. ...++
T Consensus         1 ~g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~   79 (190)
T PRK04296          1 MAKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI   79 (190)
T ss_pred             CcEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence            37899999999999999997777766667888776655434343333344443322222112222222222211 23478


Q ss_pred             cEEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304          110 DVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE  187 (240)
Q Consensus       110 ~lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~  187 (240)
                      ++|++||.+++  +++.++++.++. .|++|++++++.++.+++|+.+..|..+||.|..|+..|..||.++.++.|+.+
T Consensus        80 dvviIDEaq~l~~~~v~~l~~~l~~-~g~~vi~tgl~~~~~~~~f~~~~~L~~~aD~V~~l~~vC~~Cg~~a~~~~r~~~  158 (190)
T PRK04296         80 DCVLIDEAQFLDKEQVVQLAEVLDD-LGIPVICYGLDTDFRGEPFEGSPYLLALADKVTELKAICVHCGRKATMNQRLID  158 (190)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHH-cCCeEEEEecCcccccCcCchHHHHHHhcCeEEEeeEEccccCCccceEEEEeC
Confidence            99999999885  358888877776 799999999999999999999999999999999999999999999999999984


Q ss_pred             ------CCcEEEeCCcceEEeecchhhccC
Q 026304          188 ------ETETEIIGGADVYMPVCRQHYVNG  211 (240)
Q Consensus       188 ------~~~~~~~g~~~~y~~~c~~~~~~~  211 (240)
                            +++++.+|+.+.|.++||+||...
T Consensus       159 ~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~~~  188 (190)
T PRK04296        159 GGPAVYEGPQVLVGGNESYEAVCRKHYKEA  188 (190)
T ss_pred             CCCccCCCCEEEECCcCcEEehhHHhhhcc
Confidence                  567888999999999999999754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.94  E-value=1.1e-26  Score=216.60  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=115.3

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCc------eEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGR------NIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~------~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+.  ..|.      ++...+.. . .....
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~G~~~p~~G~i~~~~~~~~~~~~~-~-~~~~i   79 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALA-RALAGELPLLSGERQSQFSHITRLSFE-Q-LQKLV   79 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCceEEECCcccccCCHH-H-HHHHh
Confidence            79999999999     8999999999999999999999999999 9999973  2232      22111111 1 11224


Q ss_pred             eEEEccCce--e-c-----ceecCcchh-----------HHHhh-----------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAK--L-P-----CWALPELTS-----------FRQKL-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~--~-~-----~~~~~~~~~-----------~~~~~-----------------------~~~l~~~p~lllL  114 (240)
                      ++++|+...  + .     .+++.++..           +...+                       ...++.+|++|||
T Consensus        80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  159 (490)
T PRK10938         80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL  159 (490)
T ss_pred             ceeccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            788886432  1 0     233433221           00000                       1226899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |||++      +..+.++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       160 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~~~----------~~~~d~v~~l~~G~i~~~~~~~~  221 (490)
T PRK10938        160 DEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEI----------PDFVQFAGVLADCTLAETGEREE  221 (490)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHH----------HhhCCEEEEEECCEEEEeCCHHH
Confidence            99988      4579999999886 589999999999999          999999999999 8888777653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.94  E-value=2.1e-26  Score=216.62  Aligned_cols=162  Identities=12%  Similarity=0.078  Sum_probs=117.4

Q ss_pred             CceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEee
Q 026304            8 PAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMI   65 (240)
Q Consensus         8 ~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~   65 (240)
                      .+||+++|++++|         ++++||++.+||+++|+||||||||||+ ++|+|+..       .|.      ++...
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~i~G~~~~~~~~~~~G~i~~~g~~i~~~   81 (529)
T PRK15134          3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTA-LSILRLLPSPPVVYPSGDIRFHGESLLHA   81 (529)
T ss_pred             CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHH-HHHhcCCCCCcCCccceEEEECCEecccC
Confidence            3589999999987         6899999999999999999999999999 99999742       232      22221


Q ss_pred             ccch--hcccCCCeEEEccCc--eecceecCcchhH--------------------H------------Hh---------
Q 026304           66 KSSK--DTRYAIDSVVTHDGA--KLPCWALPELTSF--------------------R------------QK---------  100 (240)
Q Consensus        66 ~~~~--~~~~~~~~~v~q~~~--~~~~~~~~~~~~~--------------------~------------~~---------  100 (240)
                      +...  ..+....+|++|+..  +++.+++.++..+                    .            .+         
T Consensus        82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe  161 (529)
T PRK15134         82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGE  161 (529)
T ss_pred             CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHH
Confidence            1111  111123589999853  3333332221110                    0            00         


Q ss_pred             -----hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          101 -----LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       101 -----~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                           ++..++.+|++|||||||+      ...++++|++++++.|.|||++|||++++          ..+||||++|+
T Consensus       162 ~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~dri~~l~  231 (529)
T PRK15134        162 RQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIV----------RKLADRVAVMQ  231 (529)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHH----------HHhcCEEEEEE
Confidence                 0112589999999999988      45789999998764589999999999999          89999999999


Q ss_pred             c-eeeccCCcce
Q 026304          170 A-RCELCGKRAF  180 (240)
Q Consensus       170 ~-~~~~~g~~~~  180 (240)
                      + ++...|+++.
T Consensus       232 ~G~i~~~g~~~~  243 (529)
T PRK15134        232 NGRCVEQNRAAT  243 (529)
T ss_pred             CCEEEEeCCHHH
Confidence            9 8877776643

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.7e-26  Score=197.53  Aligned_cols=158  Identities=13%  Similarity=0.089  Sum_probs=117.7

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeecc-------ch
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKS-------SK   69 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~-------~~   69 (240)
                      .+|+++|+++.|     ++++||++++||+++|+|+||||||||+ ++|+|+..       .|. +.....       ..
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~~~~~~~G~-i~~~g~~i~~~~~~~   83 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI-KTLNRISELEGPVKVEGV-VDFFGQNIYDPRINI   83 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcCcccCCccceE-EEECCEeccccccch
Confidence            479999999998     8999999999999999999999999999 99999732       342 221110       00


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH-------------h-------h---------------------------c
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-------------K-------L---------------------------G  102 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-------------~-------~---------------------------~  102 (240)
                      .......+|++|+..+++ .++.++..+..             .       +                           +
T Consensus        84 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la  162 (259)
T PRK14260         84 NRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA  162 (259)
T ss_pred             HhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence            111123589999887765 56655443210             0       0                           1


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec-----c-
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT-----A-  170 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~-----~-  170 (240)
                      ..++.+|++|+||||++      +..+.+.|+++++  +.|||++|||++++          ..+||++++|+     + 
T Consensus       163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~~~i----------~~~~d~i~~l~~~~~~~G  230 (259)
T PRK14260        163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNMQQA----------TRVSDFTAFFSTDESRIG  230 (259)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH----------HHhcCeEEEEeccCCCCc
Confidence            11588999999999987      4578889988864  58999999999999          99999999997     4 


Q ss_pred             eeeccCCccee
Q 026304          171 RCELCGKRAFF  181 (240)
Q Consensus       171 ~~~~~g~~~~~  181 (240)
                      +++..|+++.+
T Consensus       231 ~i~~~~~~~~~  241 (259)
T PRK14260        231 QMVEFGVTTQI  241 (259)
T ss_pred             eEEEeCCHHHH
Confidence            77777776653

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.94  E-value=3.4e-26  Score=193.68  Aligned_cols=146  Identities=20%  Similarity=0.119  Sum_probs=107.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR   98 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~   98 (240)
                      ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +..............+|++|+..+++.+++.++..+.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLL-NLISGLAQPTSGG-VILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALA   78 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEECCEECCCCChhheEEecCcccCCCCCHHHHHHHH
Confidence            5799999999999999999999999999 9999973  2232 2211111000001137899988777766666554331


Q ss_pred             H--------------h-------h-----------------------chhhhccCcEEEEcCccC------hHHHHHHHH
Q 026304           99 Q--------------K-------L-----------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCC  128 (240)
Q Consensus        99 ~--------------~-------~-----------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~  128 (240)
                      .              .       +                       ...++.+|++||||||++      +..+.+.|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~  158 (230)
T TIGR01184        79 VDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELM  158 (230)
T ss_pred             HHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHH
Confidence            0              0       0                       111588999999999988      457889998


Q ss_pred             HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +++++.|.|||++|||++++          ..+||++++|++ ++...|++
T Consensus       159 ~~~~~~~~tii~~sH~~~~~----------~~~~d~v~~l~~G~i~~~~~~  199 (230)
T TIGR01184       159 QIWEEHRVTVLMVTHDVDEA----------LLLSDRVVMLTNGPAANIGQI  199 (230)
T ss_pred             HHHHhcCCEEEEEeCCHHHH----------HHhcCEEEEEeCCcEecccCc
Confidence            88764589999999999999          899999999998 77766654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.2e-26  Score=197.07  Aligned_cols=156  Identities=14%  Similarity=0.071  Sum_probs=114.0

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeeccch-------hc
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIKSSK-------DT   71 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~~~~-------~~   71 (240)
                      -+++|++++|     ++++||+|.+|++++|+||||||||||+ ++|+|+..       .|. +.......       ..
T Consensus         6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl-~~i~G~~~~~~~~~~~G~-i~~~g~~i~~~~~~~~~   83 (251)
T PRK14244          6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFL-RCFNRMNDFVPNCKVKGE-LDIDGIDVYSVDTNVVL   83 (251)
T ss_pred             EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhcccCCCCCcceE-EEECCEehHhcccchHH
Confidence            4688999988     8999999999999999999999999999 99999742       342 22211000       01


Q ss_pred             ccCCCeEEEccCceecceecCcchhHH---------------------Hhh---------------------------ch
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFR---------------------QKL---------------------------GD  103 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~---------------------~~~---------------------------~~  103 (240)
                      .....+|++|+..+++. ++.++..+.                     ..+                           ..
T Consensus        84 ~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  162 (251)
T PRK14244         84 LRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR  162 (251)
T ss_pred             HhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence            12235899998766653 443332211                     000                           11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++|+||||++      +..+.+.|+++.  .+.|||++|||++++          ..+||++++|++ ++...|
T Consensus       163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~~~~----------~~~~d~i~~l~~G~i~~~~  230 (251)
T PRK14244        163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVVTHSMKQA----------KKVSDRVAFFQSGRIVEYN  230 (251)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHH----------HhhcCEEEEEECCEEEEeC
Confidence            2588999999999988      457888888884  379999999999999          899999999999 887777


Q ss_pred             Cccee
Q 026304          177 KRAFF  181 (240)
Q Consensus       177 ~~~~~  181 (240)
                      +++.+
T Consensus       231 ~~~~~  235 (251)
T PRK14244        231 TTQEI  235 (251)
T ss_pred             CHHHH
Confidence            76543

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.94  E-value=2.5e-26  Score=191.32  Aligned_cols=152  Identities=15%  Similarity=0.088  Sum_probs=112.7

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      ..++++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+.. ..+ 
T Consensus         5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~~-~~~-   81 (207)
T cd03369           5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLI-LALFRFLEAEEGKIEIDGIDISTIPLE-DLR-   81 (207)
T ss_pred             CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCeEEECCEEhHHCCHH-HHH-
Confidence            368999999987       7899999999999999999999999999 9999972        233333211111 112 


Q ss_pred             CCCeEEEccCceecceecCcchhHH---------Hh-------------------hchhhhccCcEEEEcCccC------
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR---------QK-------------------LGDDAYAKLDVIGIDEAQF------  119 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~---------~~-------------------~~~~l~~~p~lllLDEP~~------  119 (240)
                      ...+|++|++.+++. ++.++..+.         ..                   +...++.+|++||||||++      
T Consensus        82 ~~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~  160 (207)
T cd03369          82 SSLTIIPQDPTLFSG-TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT  160 (207)
T ss_pred             hhEEEEecCCcccCc-cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHH
Confidence            235899998876653 554433211         00                   1223689999999999987      


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          120 FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       120 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      +..++++|+++.  .+.|+|++||+++++          .. ||++++|++ ++...|+
T Consensus       161 ~~~l~~~l~~~~--~~~tiii~th~~~~~----------~~-~d~v~~l~~g~i~~~g~  206 (207)
T cd03369         161 DALIQKTIREEF--TNSTILTIAHRLRTI----------ID-YDKILVMDAGEVKEYDH  206 (207)
T ss_pred             HHHHHHHHHHhc--CCCEEEEEeCCHHHH----------hh-CCEEEEEECCEEEecCC
Confidence            457888888874  489999999999998          65 999999998 7765554

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.94  E-value=2.4e-26  Score=193.13  Aligned_cols=148  Identities=18%  Similarity=0.140  Sum_probs=109.5

Q ss_pred             EEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch-hcc
Q 026304           11 VTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK-DTR   72 (240)
Q Consensus        11 l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~-~~~   72 (240)
                      ++++|+++.|         ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++.. ...
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGSLKVLGQELYGASEKELVQL   80 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence            6788888765         7899999999999999999999999999 9999972        2333332221111 011


Q ss_pred             cCCCeEEEccCceecceecCcchhHHHhh-------------------------------------------chhhhccC
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------GDDAYAKL  109 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~~p  109 (240)
                      ....+|++|+..+++..++.++..+...+                                           ...++.+|
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p  160 (220)
T TIGR02982        81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP  160 (220)
T ss_pred             HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence            22358999988777766665544322100                                           11258899


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++|+||||++      +..+.++|+++.++.+.|||++|||++ .          ..+||++++|++
T Consensus       161 ~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~----------~~~~d~v~~l~~  216 (220)
T TIGR02982       161 KLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-I----------LDVADRIVHMED  216 (220)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-H----------HhhCCEEEEEEC
Confidence            9999999987      457889998887645899999999998 4          479999999986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=216.97  Aligned_cols=157  Identities=18%  Similarity=0.187  Sum_probs=114.4

Q ss_pred             CceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304            8 PAAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus         8 ~~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      .++|+++|+++.|   ++|+||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++....+ ...
T Consensus       263 ~~~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-~~i  340 (510)
T PRK09700        263 ETVFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELM-NCLFGVDKRAGGEIRLNGKDISPRSPLDAVK-KGM  340 (510)
T ss_pred             CcEEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCcCCCCeEEECCEECCCCCHHHHHH-CCc
Confidence            3589999999877   8999999999999999999999999999 9999972        2333321111111111 235


Q ss_pred             eEEEccC---ceecceecCcchhH----------------------------HHhh------------------------
Q 026304           77 SVVTHDG---AKLPCWALPELTSF----------------------------RQKL------------------------  101 (240)
Q Consensus        77 ~~v~q~~---~~~~~~~~~~~~~~----------------------------~~~~------------------------  101 (240)
                      +|++|+.   .+++.+++.++..+                            ...+                        
T Consensus       341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l  420 (510)
T PRK09700        341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI  420 (510)
T ss_pred             EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence            8899862   34444444332211                            0000                        


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ...++.+|++|||||||+      ...++++|+++++ .|.|||++|||++++          ..+|||+++|++ ++..
T Consensus       421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~~~----------~~~~d~i~~l~~G~i~~  489 (510)
T PRK09700        421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELPEI----------ITVCDRIAVFCEGRLTQ  489 (510)
T ss_pred             HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HhhCCEEEEEECCEEEE
Confidence            112588999999999988      4578999999886 699999999999999          999999999998 7765


Q ss_pred             cCC
Q 026304          175 CGK  177 (240)
Q Consensus       175 ~g~  177 (240)
                      .++
T Consensus       490 ~~~  492 (510)
T PRK09700        490 ILT  492 (510)
T ss_pred             Eec
Confidence            443

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.94  E-value=6.6e-27  Score=224.41  Aligned_cols=157  Identities=17%  Similarity=0.110  Sum_probs=125.4

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|++|+|       |+|+||+|++||.++|+|+||||||||+ |+|.|+        .++|.++..++....++  
T Consensus       471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~-KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~--  547 (709)
T COG2274         471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLL-KLLLGLYKPQQGRILLDGVDLNDIDLASLRR--  547 (709)
T ss_pred             eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEeHHhcCHHHHHh--
Confidence            59999999999       8999999999999999999999999999 999997        45777777665543322  


Q ss_pred             CCeEEEccCceecceecCcchhHHH------------h-----------------------------------hchhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ------------K-----------------------------------LGDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~------------~-----------------------------------~~~~l~~  107 (240)
                      ..+||+|++.+|.. ++.+|..+..            .                                   +++.+++
T Consensus       548 ~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~  626 (709)
T COG2274         548 QVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS  626 (709)
T ss_pred             heeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence            35899999887764 3443332210            0                                   0122689


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.|.++..  |+|+|+++|++..+           +.||||++|++ +++..|+.++
T Consensus       627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl~ti-----------~~adrIiVl~~Gkiv~~gs~~e  693 (709)
T COG2274         627 KPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRLSTI-----------RSADRIIVLDQGKIVEQGSHEE  693 (709)
T ss_pred             CCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccchHh-----------hhccEEEEccCCceeccCCHHH
Confidence            999999999999      2368888888864  79999999999987           88999999999 9999999876


Q ss_pred             eee
Q 026304          181 FTL  183 (240)
Q Consensus       181 ~~~  183 (240)
                      +-.
T Consensus       694 ll~  696 (709)
T COG2274         694 LLA  696 (709)
T ss_pred             HHH
Confidence            543

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.94  E-value=4.4e-26  Score=197.62  Aligned_cols=162  Identities=15%  Similarity=0.128  Sum_probs=113.3

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CCceEEeeccc--hhcccCCC
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NGRNIAMIKSS--KDTRYAID   76 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g~~i~~~~~~--~~~~~~~~   76 (240)
                      ...+|+++|++++|      ++|+||+|++|++++|+||||||||||+ ++|+|+. . .|. +......  ...+....
T Consensus         3 ~~~~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~g~~i~~~~~~~~i   80 (272)
T PRK15056          3 QQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLF-KALMGFVRLASGK-ISILGQPTRQALQKNLV   80 (272)
T ss_pred             hhceEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceE-EEECCEEhHHhhccceE
Confidence            34589999999988      7999999999999999999999999999 9999972 1 222 2111100  11111124


Q ss_pred             eEEEccCceec--ceecCcch-----------------------hHHHhh-----------------------chhhhcc
Q 026304           77 SVVTHDGAKLP--CWALPELT-----------------------SFRQKL-----------------------GDDAYAK  108 (240)
Q Consensus        77 ~~v~q~~~~~~--~~~~~~~~-----------------------~~~~~~-----------------------~~~l~~~  108 (240)
                      +|++|+..+..  ..++.++.                       .....+                       ...++.+
T Consensus        81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~  160 (272)
T PRK15056         81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQ  160 (272)
T ss_pred             EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            78887643210  01111110                       000000                       1225889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~  181 (240)
                      |++|+||||++      ...+.++|+++++ +|.|||++|||++++          ..+||++++++.++...|+++.+
T Consensus       161 p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~~~----------~~~~d~v~~~~G~i~~~g~~~~~  228 (272)
T PRK15056        161 GQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLGSV----------TEFCDYTVMVKGTVLASGPTETT  228 (272)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEECCEEEeecCHHhc
Confidence            99999999988      4578899999876 689999999999999          89999998884488778877653

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=1.3e-26  Score=201.29  Aligned_cols=156  Identities=11%  Similarity=0.048  Sum_probs=116.8

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++|++++|       ++++||+|++||+++|+||||||||||+ ++|+|+.       ++|.++...+.. ..+ ..
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl-~~L~gl~~~~G~I~i~g~~i~~~~~~-~lr-~~   78 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGDIQIDGVSWNSVPLQ-KWR-KA   78 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEhhhCCHH-HHh-hh
Confidence            37899999998       8999999999999999999999999999 9999973       334333322211 112 23


Q ss_pred             CeEEEccCceecceecCcchhHH------------Hh----------------------------------hchhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR------------QK----------------------------------LGDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~------------~~----------------------------------~~~~l~~~p  109 (240)
                      .+|++|++.+++. ++.+++...            ..                                  ++..++.+|
T Consensus        79 i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p  157 (275)
T cd03289          79 FGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  157 (275)
T ss_pred             EEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            5899998877753 444433210            00                                  011258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ++|+||||++      ...+.+.|+++.  .++|||++||+++.+          . .||||++|++ ++...|+|+.+.
T Consensus       158 ~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i----------~-~~dri~vl~~G~i~~~g~~~~l~  224 (275)
T cd03289         158 KILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIEAM----------L-ECQRFLVIEENKVRQYDSIQKLL  224 (275)
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHHHH----------H-hCCEEEEecCCeEeecCCHHHHh
Confidence            9999999988      346777777763  479999999999988          5 4999999999 999999987653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.93  E-value=3.1e-26  Score=190.09  Aligned_cols=143  Identities=17%  Similarity=0.098  Sum_probs=107.3

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|+++.|     ++++||+|++|++++|+|+||||||||+ ++|+|+.        ++|.++....  ...+ ...+
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~-~~i~   76 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLL-RILAGLSPPLAGRVLLNGGPLDFQR--DSIA-RGLL   76 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEeccccc--HHhh-hheE
Confidence            4789999988     8999999999999999999999999999 9999973        2333322111  1111 2347


Q ss_pred             EEEccCceecceecCcchhHHH-------------hh-----------------------chhhhccCcEEEEcCccC--
Q 026304           78 VVTHDGAKLPCWALPELTSFRQ-------------KL-----------------------GDDAYAKLDVIGIDEAQF--  119 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~-------------~~-----------------------~~~l~~~p~lllLDEP~~--  119 (240)
                      |++|...+++..++.++..+..             .+                       +..++.+|++|+||||++  
T Consensus        77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L  156 (201)
T cd03231          77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL  156 (201)
T ss_pred             EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence            8888776666666655443210             00                       122589999999999988  


Q ss_pred             ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                          +..+.+.|+++.+ .|.|+|++|||....          ..+|++++.+
T Consensus       157 D~~~~~~l~~~l~~~~~-~g~tiii~sH~~~~~----------~~~~~~~~~~  198 (201)
T cd03231         157 DKAGVARFAEAMAGHCA-RGGMVVLTTHQDLGL----------SEAGARELDL  198 (201)
T ss_pred             CHHHHHHHHHHHHHHHh-CCCEEEEEecCchhh----------hhccceeEec
Confidence                4578888988876 689999999999888          8899999876

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.93  E-value=8.7e-26  Score=190.52  Aligned_cols=154  Identities=19%  Similarity=0.152  Sum_probs=112.9

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc--hhcccC
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS--KDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~--~~~~~~   74 (240)
                      .+.++|++++|         ++++||++++||+++|+||||||||||+ ++|+|+..    ....+......  ......
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~   81 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLL-DAISGRVEGGGTTSGQILFNGQPRKPDQFQK   81 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHH-HHHhCccCCCCCCceEEEECCEECChHHhcc
Confidence            35677777776         7899999999999999999999999999 99999743    22223221111  111122


Q ss_pred             CCeEEEccCceecceecCcchhHHH--------------------hh--------------------------chhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ--------------------KL--------------------------GDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~--------------------~~--------------------------~~~l~~~  108 (240)
                      ..+|++|+..+++.+++.++..+..                    .+                          ...++.+
T Consensus        82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~  161 (226)
T cd03234          82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWD  161 (226)
T ss_pred             cEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhC
Confidence            3588999887777666655443210                    00                          1115889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh-hhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG-DYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~-~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      |++|+||||++      +..+.++++++.+ .+.|+|++||++ +.+          ..+||++++|++ ++...
T Consensus       162 p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~----------~~~~d~i~~l~~G~i~~~  225 (226)
T cd03234         162 PKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDL----------FRLFDRILLLSSGEIVYS  225 (226)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHH----------HHhCCEEEEEeCCEEEec
Confidence            99999999987      4578899998876 589999999998 578          899999999998 76654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.93  E-value=3e-26  Score=214.56  Aligned_cols=162  Identities=14%  Similarity=0.091  Sum_probs=117.4

Q ss_pred             CceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeecc------chhc
Q 026304            8 PAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKS------SKDT   71 (240)
Q Consensus         8 ~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~------~~~~   71 (240)
                      .++|+++|+++.|        ++++||+|++|++++|+||||||||||+ ++|+|+..  ..-.+.....      ....
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~  335 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELV-QCLFGAYPGRWEGEIFIDGKPVKIRNPQQA  335 (506)
T ss_pred             CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCcEEEECCEECCCCCHHHH
Confidence            3589999999876        7899999999999999999999999999 99999832  2222221110      0011


Q ss_pred             ccCCCeEEEccC---ceecceecCcchhHH------------------------Hhh-----------------------
Q 026304           72 RYAIDSVVTHDG---AKLPCWALPELTSFR------------------------QKL-----------------------  101 (240)
Q Consensus        72 ~~~~~~~v~q~~---~~~~~~~~~~~~~~~------------------------~~~-----------------------  101 (240)
                      .....+|++|+.   .+++.+++.++..+.                        ..+                       
T Consensus       336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~  415 (506)
T PRK13549        336 IAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAV  415 (506)
T ss_pred             HHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHH
Confidence            112358999874   244444443322110                        000                       


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++|||||||+      +..++++|.++++ +|.|||++|||++++          ..+|||+++|++ ++.
T Consensus       416 lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~~~----------~~~~d~v~~l~~G~i~  484 (506)
T PRK13549        416 LAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEV----------LGLSDRVLVMHEGKLK  484 (506)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEE
Confidence             112588999999999988      4578999999887 699999999999999          999999999998 887


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+++.+
T Consensus       485 ~~~~~~~~  492 (506)
T PRK13549        485 GDLINHNL  492 (506)
T ss_pred             EEeccccC
Confidence            77766543

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.93  E-value=3.1e-26  Score=214.17  Aligned_cols=160  Identities=13%  Similarity=0.123  Sum_probs=118.5

Q ss_pred             ceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEE
Q 026304            9 AAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         9 ~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      ++++++|+++..++++||+|.+||+++|+||||||||||+ ++|+|+.        ++|+++...++....+ ...+|++
T Consensus       256 ~~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~-~~i~~v~  333 (501)
T PRK10762        256 VRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELM-KVLYGALPRTSGYVTLDGHEVVTRSPQDGLA-NGIVYIS  333 (501)
T ss_pred             cEEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCCCCHHHHHH-CCCEEec
Confidence            5899999998779999999999999999999999999999 9999972        2333332211111112 2358999


Q ss_pred             ccC---ceecceecCcchhH-------------------------HHhh------------------------chhhhcc
Q 026304           81 HDG---AKLPCWALPELTSF-------------------------RQKL------------------------GDDAYAK  108 (240)
Q Consensus        81 q~~---~~~~~~~~~~~~~~-------------------------~~~~------------------------~~~l~~~  108 (240)
                      |++   .+++.+++.++..+                         ...+                        +..++.+
T Consensus       334 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~  413 (501)
T PRK10762        334 EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTR  413 (501)
T ss_pred             CccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhC
Confidence            985   34444444332211                         0000                        1125889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|||||||+      +..+.++|+++++ +|.|||++|||++++          ..+||++++|++ ++...++++.+
T Consensus       414 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~~~----------~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        414 PKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMPEV----------LGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH----------HhhCCEEEEEECCEEEEEeccccC
Confidence            99999999988      4578999999986 699999999999999          999999999998 87776665543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=6.8e-26  Score=195.38  Aligned_cols=160  Identities=17%  Similarity=0.133  Sum_probs=117.7

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~   69 (240)
                      ++.+.++++++.|     ++++||++++||+++|+||||||||||+ ++|+|+..       .|.      ++.......
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~   84 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVL-RSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP   84 (261)
T ss_pred             CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccccccCCCCceEEEECCEeccccccch
Confidence            4578999999998     8999999999999999999999999999 99999742       332      221110011


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHHH-----------h----h------------------------------chh
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-----------K----L------------------------------GDD  104 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-----------~----~------------------------------~~~  104 (240)
                      .......+|++|+..++. .++.++..+..           .    +                              +..
T Consensus        85 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~lara  163 (261)
T PRK14263         85 VVVRRYIGMVFQQPNPFS-MSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARA  163 (261)
T ss_pred             HhhhhceEEEecCCcccc-ccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHH
Confidence            111223589999877663 55555443210           0    0                              112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec--------c
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT--------A  170 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~--------~  170 (240)
                      ++.+|++|+||||++      +.++.++|+++.  .+.|||++||+++++          ..+|||+++|+        +
T Consensus       164 l~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~~tii~isH~~~~i----------~~~~d~v~~l~~~~~~~~~~  231 (261)
T PRK14263        164 IATEPEVLLLDEPCSALDPIATRRVEELMVELK--KDYTIALVTHNMQQA----------IRVADTTAFFSVDISQGTRT  231 (261)
T ss_pred             HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHH----------HHhCCEEEEEecccccccCC
Confidence            588999999999988      457899998885  368999999999999          89999999995        5


Q ss_pred             -eeeccCCccee
Q 026304          171 -RCELCGKRAFF  181 (240)
Q Consensus       171 -~~~~~g~~~~~  181 (240)
                       +++..|+++.+
T Consensus       232 G~i~~~g~~~~~  243 (261)
T PRK14263        232 GYLVEMGPTAQI  243 (261)
T ss_pred             ceEEEeCCHHHH
Confidence             77777776543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=5.1e-26  Score=189.65  Aligned_cols=145  Identities=20%  Similarity=0.107  Sum_probs=106.1

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccc---hhcccCCCeEE
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSS---KDTRYAIDSVV   79 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~---~~~~~~~~~~v   79 (240)
                      ||+++|+++.|     ++++||+|++||+++|+||||||||||+ ++|+|+.  ..|. +......   ...+ ...+|+
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~-i~~~g~~~~~~~~~-~~~~~~   78 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLL-RLIAGLLPPAAGT-IKLDGGDIDDPDVA-EACHYL   78 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEECCEeCcchhhH-hhcEEe
Confidence            79999999998     9999999999999999999999999999 9999972  2232 2111000   0112 224788


Q ss_pred             EccCceecceecCcchhHHHh---------------h-----------------------chhhhccCcEEEEcCccC--
Q 026304           80 THDGAKLPCWALPELTSFRQK---------------L-----------------------GDDAYAKLDVIGIDEAQF--  119 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~~~---------------~-----------------------~~~l~~~p~lllLDEP~~--  119 (240)
                      +|...+++..++.++..+...               +                       ...++.+|++|+||||++  
T Consensus        79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L  158 (207)
T PRK13539         79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL  158 (207)
T ss_pred             cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            876666655566554432110               0                       112588999999999988  


Q ss_pred             ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                          ...++++|+++++ +|.|||++||+++++          ..  |+++.+..
T Consensus       159 D~~~~~~l~~~l~~~~~-~~~tiii~sH~~~~~----------~~--~~~~~~~~  200 (207)
T PRK13539        159 DAAAVALFAELIRAHLA-QGGIVIAATHIPLGL----------PG--ARELDLGP  200 (207)
T ss_pred             CHHHHHHHHHHHHHHHH-CCCEEEEEeCCchhh----------cc--CcEEeecC
Confidence                4578899998876 699999999999998          54  88877753

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.93  E-value=1.6e-26  Score=196.18  Aligned_cols=153  Identities=16%  Similarity=0.127  Sum_probs=111.0

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      ++++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+. ...+ ..
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~-~~   77 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLT-KLIQRFYVPENGRVLVDGHDLALADP-AWLR-RQ   77 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCeehHhcCH-HHHh-hc
Confidence            4678898887       7899999999999999999999999999 9999972        23332221111 1111 23


Q ss_pred             CeEEEccCceecceecCcchhH----------------------HHh-------------------------hchhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSF----------------------RQK-------------------------LGDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~~l~~~  108 (240)
                      .+|++|+..+++ .++.+++.+                      ...                         +...++.+
T Consensus        78 i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~  156 (237)
T cd03252          78 VGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN  156 (237)
T ss_pred             EEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence            588898876553 244332211                      000                         01125889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++||||||++      +..+.+.|+++.  .|.|||++|||++++          . .||++++|++ ++...|+++.
T Consensus       157 p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~~~~----------~-~~d~v~~l~~G~i~~~~~~~~  222 (237)
T cd03252         157 PRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTV----------K-NADRIIVMEKGRIVEQGSHDE  222 (237)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEEcCHHH
Confidence            99999999988      457888888885  389999999999988          5 5999999999 8887777654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.93  E-value=2.8e-26  Score=237.87  Aligned_cols=164  Identities=14%  Similarity=0.081  Sum_probs=131.0

Q ss_pred             CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304            8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus         8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      ..+|+++||++.|       ++++||+|++||+++|+||||||||||+ |+|+|+        .++|+++..  .....+
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLl-kmL~Gll~ptsG~I~i~G~~i~~--~~~~~r 2011 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTF-KMLTGDTTVTSGDATVAGKSILT--NISDVH 2011 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECcc--hHHHHh
Confidence            4589999999988       7899999999999999999999999999 999997        234444321  111112


Q ss_pred             cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD  110 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~  110 (240)
                       ...+|++|...+++.+++.+++.+...+                                          +..++.+|+
T Consensus      2012 -~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~ 2090 (2272)
T TIGR01257      2012 -QNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPP 2090 (2272)
T ss_pred             -hhEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence             2358999998888888887766542211                                          111588999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTL  183 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~  183 (240)
                      +|+||||++      ++.++++|+++++ +|+|||++||+++++          ..+|||+++|++ ++...|++..+..
T Consensus      2091 VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIILtTH~mee~----------e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257      2091 LVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVLTSHSMEEC----------EALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHHHH
Confidence            999999988      5689999999877 599999999999999          999999999999 8888899877665


Q ss_pred             eec
Q 026304          184 RKT  186 (240)
Q Consensus       184 ~~~  186 (240)
                      ++.
T Consensus      2160 ~~g 2162 (2272)
T TIGR01257      2160 KFG 2162 (2272)
T ss_pred             HhC
Confidence            554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.93  E-value=1.7e-26  Score=195.53  Aligned_cols=153  Identities=16%  Similarity=0.082  Sum_probs=110.7

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+.. ..+ ..
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~-~~   77 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRFYDVDSGRILIDGHDVRDYTLA-SLR-RQ   77 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhccccCCCCEEEECCEEhhhCCHH-HHH-hh
Confidence            4678888876       7899999999999999999999999999 9999972        233332211111 112 23


Q ss_pred             CeEEEccCceecceecCcchhHH----------------------Hh-------------------------hchhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR----------------------QK-------------------------LGDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~~l~~~  108 (240)
                      .+|++|+..+++ .++.++..+.                      ..                         +...++.+
T Consensus        78 i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  156 (234)
T cd03251          78 IGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD  156 (234)
T ss_pred             EEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence            478888876654 3443322110                      00                         01225889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |++|+||||++      ...+.+.|+++.  ++.|||++|||++++          .. ||++++|++ ++...|+++.
T Consensus       157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~----------~~-~d~v~~l~~G~i~~~~~~~~  222 (234)
T cd03251         157 PPILILDEATSALDTESERLVQAALERLM--KNRTTFVIAHRLSTI----------EN-ADRIVVLEDGKIVERGTHEE  222 (234)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH----------hh-CCEEEEecCCeEeeeCCHHH
Confidence            99999999988      457888888885  378999999999998          65 999999999 8877776554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.93  E-value=1.4e-26  Score=196.74  Aligned_cols=153  Identities=15%  Similarity=0.088  Sum_probs=109.5

Q ss_pred             EEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchhcccC
Q 026304           11 VTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKDTRYA   74 (240)
Q Consensus        11 l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~~~~~   74 (240)
                      ++++|+++.|        ++++||++++|++++|+||||||||||+ ++|+|+.  ..|      .++...+.. ..+ .
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~   77 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPTSGEILLDGVDIRDLNLR-WLR-S   77 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHH-HHHhccCCCCCCEEEECCEehhhcCHH-HHH-h
Confidence            4678888876        7899999999999999999999999999 9999972  233      322211111 111 2


Q ss_pred             CCeEEEccCceecceecCcchhH----------------------HHh-------------------------hchhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSF----------------------RQK-------------------------LGDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~~l~~  107 (240)
                      ..+|++|+..+++ .++.++..+                      ...                         +...++.
T Consensus        78 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~  156 (238)
T cd03249          78 QIGLVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLR  156 (238)
T ss_pred             hEEEECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhc
Confidence            3578888765543 233322111                      000                         0112588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+||||++      +..+.+.|+++.  +|.|||++|||++++          . +||++++|++ ++...|+++.
T Consensus       157 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~~----------~-~~d~v~~l~~G~i~~~~~~~~  223 (238)
T cd03249         157 NPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLSTI----------R-NADLIAVLQNGQVVEQGTHDE  223 (238)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHH----------h-hCCEEEEEECCEEEEeCCHHH
Confidence            999999999988      457888888875  589999999999998          6 8999999999 8877766543

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.93  E-value=4.8e-26  Score=213.77  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=120.3

Q ss_pred             CceEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEee-c-------c
Q 026304            8 PAAVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMI-K-------S   67 (240)
Q Consensus         8 ~~~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~-~-------~   67 (240)
                      .+||+++|++++|          ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +... .       .
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~Gl~~p~~G~-i~~~~g~~~~~~~~  354 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLS-KIIAGVLEPTSGE-VNVRVGDEWVDMTK  354 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeE-EEEecCCccccccc
Confidence            4589999999876          7899999999999999999999999999 9999983  2332 2210 0       0


Q ss_pred             ---ch-hcccCCCeEEEccCceecceecCcchhHH------------------Hh--h----------------------
Q 026304           68 ---SK-DTRYAIDSVVTHDGAKLPCWALPELTSFR------------------QK--L----------------------  101 (240)
Q Consensus        68 ---~~-~~~~~~~~~v~q~~~~~~~~~~~~~~~~~------------------~~--~----------------------  101 (240)
                         .. .......+|++|+..+++.+++.+++.+.                  ..  +                      
T Consensus       355 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~q  434 (520)
T TIGR03269       355 PGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERH  434 (520)
T ss_pred             cchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHH
Confidence               00 01112358999987766666665444320                  00  0                      


Q ss_pred             ----chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-
Q 026304          102 ----GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-  170 (240)
Q Consensus       102 ----~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-  170 (240)
                          +..++.+|++|||||||+      +..++++|++++++.|.|||++|||++++          ..+|||+++|++ 
T Consensus       435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~----------~~~~d~i~~l~~G  504 (520)
T TIGR03269       435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFV----------LDVCDRAALMRDG  504 (520)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH----------HHhCCEEEEEECC
Confidence                111588999999999988      45789999998764689999999999999          999999999998 


Q ss_pred             eeeccCCcce
Q 026304          171 RCELCGKRAF  180 (240)
Q Consensus       171 ~~~~~g~~~~  180 (240)
                      ++...|+++.
T Consensus       505 ~i~~~g~~~~  514 (520)
T TIGR03269       505 KIVKIGDPEE  514 (520)
T ss_pred             EEEEECCHHH
Confidence            8877776643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.93  E-value=2.1e-26  Score=194.46  Aligned_cols=153  Identities=20%  Similarity=0.137  Sum_probs=110.1

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~~~~~~   75 (240)
                      -|+++|++++|      ++++||++++|++++|+||||||||||+ ++|+|+.  ..|      .++...+.  ......
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~   78 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLI-NLLMRFYDPQKGQILIDGIDIRDISR--KSLRSM   78 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEeHHHcCH--HHHhhh
Confidence            37899999987      8899999999999999999999999999 9999973  223      22211111  111123


Q ss_pred             CeEEEccCceecceecCcchhH----------------------HHh-------------------------hchhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSF----------------------RQK-------------------------LGDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~~l~~~  108 (240)
                      .+|++|+..+++. ++.++..+                      ...                         +...++.+
T Consensus        79 i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~  157 (229)
T cd03254          79 IGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD  157 (229)
T ss_pred             EEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence            4788888765543 33222111                      000                         01225899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      |++||||||++      +..+++.|+++.  .+.|||++||+++++          . .||++++|++ ++...|+.+
T Consensus       158 p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~~~~----------~-~~d~i~~l~~g~~~~~~~~~  222 (229)
T cd03254         158 PKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRLSTI----------K-NADKILVLDDGKIIEEGTHD  222 (229)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH----------h-hCCEEEEEeCCeEEEeCCHH
Confidence            99999999987      457888888884  389999999999988          5 4999999998 777666544

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=7e-26  Score=193.77  Aligned_cols=157  Identities=11%  Similarity=0.100  Sum_probs=115.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccc-------hh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSS-------KD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~-------~~   70 (240)
                      +|+++|+++.|     ++++||+|++||+++|+||||||||||+ ++|+|+.       ..|. +......       ..
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~~G~-v~~~g~~i~~~~~~~~   80 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFI-RTLNRMNDLIPGFRHEGH-IYLDGVDIYDPAVDVV   80 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhhhccCCCCCCccE-EEECCEEcccccccHH
Confidence            68999999988     8999999999999999999999999999 9999862       1232 2211111       11


Q ss_pred             cccCCCeEEEccCceecceecCcchhHH--------------------Hh---------------------------hch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFR--------------------QK---------------------------LGD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~---------------------------~~~  103 (240)
                      ......+|++|+..+++. ++.++..+.                    ..                           +..
T Consensus        81 ~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar  159 (250)
T PRK14266         81 ELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR  159 (250)
T ss_pred             HHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence            112235899998776653 443332210                    00                           011


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      .++.+|++|+||||++      ...+.++|+++++  +.|||++||+++++          ..+||++++|++ ++...|
T Consensus       160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~----------~~~~~~i~~l~~G~i~~~g  227 (250)
T PRK14266        160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNMQQA----------TRVSKYTSFFLNGEIIESG  227 (250)
T ss_pred             HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCHHHH----------HhhcCEEEEEECCeEEEeC
Confidence            2589999999999987      4578888888853  78999999999999          999999999998 888777


Q ss_pred             Cccee
Q 026304          177 KRAFF  181 (240)
Q Consensus       177 ~~~~~  181 (240)
                      ++..+
T Consensus       228 ~~~~~  232 (250)
T PRK14266        228 LTDQI  232 (250)
T ss_pred             CHHHH
Confidence            76543

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=193.80  Aligned_cols=158  Identities=14%  Similarity=0.109  Sum_probs=117.3

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCceEEeec-------cc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGRNIAMIK-------SS   68 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~~i~~~~-------~~   68 (240)
                      ..+|+++|++++|     ++++||+|++||+++|+||||||||||+ ++|+|+..       .|. +....       ..
T Consensus        14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~~~~~sG~-i~~~g~~~~~~~~~   91 (265)
T PRK14252         14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFL-RCFNRMHDLYPGNHYEGE-IILHPDNVNILSPE   91 (265)
T ss_pred             CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcccCCCCCCCcccE-EEEcCccccccccc
Confidence            4689999999998     8999999999999999999999999999 99999732       232 22110       00


Q ss_pred             --hhcccCCCeEEEccCceecceecCcchhHH-------------H-------hh-------------------------
Q 026304           69 --KDTRYAIDSVVTHDGAKLPCWALPELTSFR-------------Q-------KL-------------------------  101 (240)
Q Consensus        69 --~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~-------------~-------~~-------------------------  101 (240)
                        ........+|++|+..+++. ++.++..+.             .       ..                         
T Consensus        92 ~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv  170 (265)
T PRK14252         92 VDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL  170 (265)
T ss_pred             cCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence              01112235889998766653 444333211             0       00                         


Q ss_pred             --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                        +..++.+|++|+||||++      ...+.++|+++++  +.|||++||+++++          ..+||++++|++ ++
T Consensus       171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~~~----------~~~~d~i~~l~~G~i  238 (265)
T PRK14252        171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQQA----------ARVSDYTAYMYMGEL  238 (265)
T ss_pred             HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHHHH----------HHhCCEEEEEECCEE
Confidence              112588999999999988      4578888888864  58999999999999          899999999999 88


Q ss_pred             eccCCcce
Q 026304          173 ELCGKRAF  180 (240)
Q Consensus       173 ~~~g~~~~  180 (240)
                      ...|+++.
T Consensus       239 ~~~g~~~~  246 (265)
T PRK14252        239 IEFGATDT  246 (265)
T ss_pred             EEeCCHHH
Confidence            77776644

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.93  E-value=4.5e-26  Score=213.55  Aligned_cols=160  Identities=18%  Similarity=0.124  Sum_probs=115.7

Q ss_pred             CceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304            8 PAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus         8 ~~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      .+||+++|+++..++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...++....+ ...+|+
T Consensus       266 ~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~~i~~v  343 (510)
T PRK15439        266 APVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELA-ETLYGLRPARGGRIMLNGKEINALSTAQRLA-RGLVYL  343 (510)
T ss_pred             CceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHH-HHHcCCCCCCCcEEEECCEECCCCCHHHHHh-CCcEEC
Confidence            34899999997669999999999999999999999999999 9999972        2333332211111111 234788


Q ss_pred             EccC---ceecceecCcchh----------------------HHHhh------------------------chhhhccCc
Q 026304           80 THDG---AKLPCWALPELTS----------------------FRQKL------------------------GDDAYAKLD  110 (240)
Q Consensus        80 ~q~~---~~~~~~~~~~~~~----------------------~~~~~------------------------~~~l~~~p~  110 (240)
                      +|+.   .+++.+++.++..                      +...+                        ...++.+|+
T Consensus       344 ~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~  423 (510)
T PRK15439        344 PEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQ  423 (510)
T ss_pred             CCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCC
Confidence            8763   2344333322110                      00000                        112588999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|||||||+      +..+.++|+++++ +|.|||++|||++++          ..+|||+++|++ ++...|++++
T Consensus       424 lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~~i----------~~~~d~i~~l~~G~i~~~~~~~~  489 (510)
T PRK15439        424 LLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLEEI----------EQMADRVLVMHQGEISGALTGAA  489 (510)
T ss_pred             EEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEEcccc
Confidence            999999988      4578999999987 699999999999999          999999999998 8876666543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.93  E-value=3.7e-26  Score=191.76  Aligned_cols=147  Identities=20%  Similarity=0.177  Sum_probs=106.0

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|+++.|       ++|+||++++|++++|+||||||||||+ ++|+|+.        ++|.++...++. ..+ ..
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~-~~~-~~   79 (220)
T cd03245           3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLL-KLLAGLYKPTSGSVLLDGTDIRQLDPA-DLR-RN   79 (220)
T ss_pred             EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCeEEECCEEhHHCCHH-HHH-hh
Confidence            7889999887       7899999999999999999999999999 9999973        223222111111 111 23


Q ss_pred             CeEEEccCceecceecCcchhH-------------H---------Hh---------------h----------chhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSF-------------R---------QK---------------L----------GDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~-------------~---------~~---------------~----------~~~l~~~  108 (240)
                      .+|++|+..+++ .++.++..+             .         ..               +          ...++.+
T Consensus        80 i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~  158 (220)
T cd03245          80 IGYVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND  158 (220)
T ss_pred             EEEeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            578888876554 244332211             0         00               0          1125889


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      |++||||||++      ...++++|+++++ . .|||++|||+++.           .+||++++|++ ++..
T Consensus       159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~~~-----------~~~d~v~~l~~g~i~~  218 (220)
T cd03245         159 PPILLLDEPTSAMDMNSEERLKERLRQLLG-D-KTLIIITHRPSLL-----------DLVDRIIVMDSGRIVA  218 (220)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcC-C-CEEEEEeCCHHHH-----------HhCCEEEEEeCCeEee
Confidence            99999999988      4578889988865 3 8999999999876           59999999988 6653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.93  E-value=5e-26  Score=191.10  Aligned_cols=150  Identities=18%  Similarity=0.088  Sum_probs=108.7

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+.        ++|.++...+.. . ....
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~-~-~~~~   79 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLL-LALFRLVELSSGSILIDGVDISKIGLH-D-LRSR   79 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCCEEEECCEEhHhCCHH-H-Hhhh
Confidence            7899999987       7899999999999999999999999999 9999972        233332211111 1 1223


Q ss_pred             CeEEEccCceecceecCcchhH---------------------HHh-------------------------hchhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSF---------------------RQK-------------------------LGDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~---------------------~~~-------------------------~~~~l~~~p  109 (240)
                      .+|++|+..+++. ++.++..+                     ...                         +...++.+|
T Consensus        80 i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p  158 (221)
T cd03244          80 ISIIPQDPVLFSG-TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS  158 (221)
T ss_pred             EEEECCCCccccc-hHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            5888988765542 44332210                     000                         012258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++|+||||++      +..+.++|+++.+  +.|||++||+++++          .. ||++++|++ ++...|+
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~----------~~-~d~i~~l~~g~~~~~~~  220 (221)
T cd03244         159 KILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRLDTI----------ID-SDRILVLDKGRVVEFDS  220 (221)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHHH----------hh-CCEEEEEECCeEEecCC
Confidence            9999999987      4578888888753  68999999999998          54 999999998 7765543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.93  E-value=3e-26  Score=194.28  Aligned_cols=153  Identities=18%  Similarity=0.158  Sum_probs=110.5

Q ss_pred             EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ++++|++++|      ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|.++...+.. ..+ ...
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~v~~~g~~~~~~~~~-~~~-~~i   77 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTIL-RLLFRFYDVSSGSILIDGQDIREVTLD-SLR-RAI   77 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEhhhCCHH-HHH-hhE
Confidence            4678888887      7899999999999999999999999999 9999973        233332221111 111 234


Q ss_pred             eEEEccCceecceecCcchhHH----------------------Hh-------------------------hchhhhccC
Q 026304           77 SVVTHDGAKLPCWALPELTSFR----------------------QK-------------------------LGDDAYAKL  109 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~~l~~~p  109 (240)
                      +|++|+..+++ .++.++..+.                      ..                         +...++.+|
T Consensus        78 ~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p  156 (236)
T cd03253          78 GVVPQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNP  156 (236)
T ss_pred             EEECCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            78888876554 2443322110                      00                         012258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ++||||||++      +..+.++|.++.+  |.|||++||+++++          .. ||++++|++ ++...|+++.
T Consensus       157 ~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~~~~----------~~-~d~~~~l~~g~i~~~~~~~~  221 (236)
T cd03253         157 PILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRLSTI----------VN-ADKIIVLKDGRIVERGTHEE  221 (236)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCHHHH----------Hh-CCEEEEEECCEEEeeCCHHH
Confidence            9999999987      4578888888753  89999999999998          55 999999998 8877766544

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.93  E-value=5.8e-26  Score=212.33  Aligned_cols=161  Identities=17%  Similarity=0.190  Sum_probs=117.3

Q ss_pred             ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEE
Q 026304            9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus         9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      ..++++|+++.. ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...++....+ ...+|+
T Consensus       256 ~~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLl-k~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~-~~i~~~  333 (501)
T PRK11288        256 VRLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELM-KLLYGATRRTAGQVYLDGKPIDIRSPRDAIR-AGIMLC  333 (501)
T ss_pred             cEEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHH-HHHcCCCcCCCceEEECCEECCCCCHHHHHh-CCCEEc
Confidence            468999998765 8999999999999999999999999999 9999972        2333322111111111 234788


Q ss_pred             EccC---ceecceecCcchhH-------------------------HHhh------------------------chhhhc
Q 026304           80 THDG---AKLPCWALPELTSF-------------------------RQKL------------------------GDDAYA  107 (240)
Q Consensus        80 ~q~~---~~~~~~~~~~~~~~-------------------------~~~~------------------------~~~l~~  107 (240)
                      +|+.   .+++.+++.+++.+                         ...+                        ...++.
T Consensus       334 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~  413 (501)
T PRK11288        334 PEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSE  413 (501)
T ss_pred             CcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHcc
Confidence            8874   24444444333211                         0000                        111578


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|||||||+      +.+++++|.++++ +|.|||++|||++++          ..+||++++|++ ++...|++++
T Consensus       414 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~----------~~~~d~i~~l~~g~i~~~~~~~~  482 (501)
T PRK11288        414 DMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLPEV----------LGVADRIVVMREGRIAGELAREQ  482 (501)
T ss_pred             CCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HhhCCEEEEEECCEEEEEEcccc
Confidence            999999999988      4578999999987 699999999999999          999999999998 8887777654


Q ss_pred             ee
Q 026304          181 FT  182 (240)
Q Consensus       181 ~~  182 (240)
                      +.
T Consensus       483 ~~  484 (501)
T PRK11288        483 AT  484 (501)
T ss_pred             CC
Confidence            43

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.93  E-value=9.4e-26  Score=187.01  Aligned_cols=134  Identities=16%  Similarity=0.044  Sum_probs=101.6

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      ||+++|++++|     ++++||++++||+++|+||||||||||+ ++|+|+.        ++|+++..  .... .....
T Consensus         1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl-~~i~G~~~~~~G~v~~~g~~~~~--~~~~-~~~~i   76 (200)
T PRK13540          1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLL-KLIAGLLNPEKGEILFERQSIKK--DLCT-YQKQL   76 (200)
T ss_pred             CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeeEEECCCcccc--CHHH-HHhhe
Confidence            58999999998     9999999999999999999999999999 9999972        23333321  1111 12235


Q ss_pred             eEEEccCceecceecCcchhHHH-------h-------h-----------------------chhhhccCcEEEEcCccC
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ-------K-------L-----------------------GDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~-------~-------~-----------------------~~~l~~~p~lllLDEP~~  119 (240)
                      +|++|+..+++..++.++..+..       .       +                       ...++.+|++|+||||++
T Consensus        77 ~~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~  156 (200)
T PRK13540         77 CFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV  156 (200)
T ss_pred             EEeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            78998877766666665544321       0       0                       112589999999999988


Q ss_pred             ------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                            +..+.+.|+++++ .|.|||++||+.+++
T Consensus       157 ~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~  190 (200)
T PRK13540        157 ALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLPL  190 (200)
T ss_pred             ccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchhc
Confidence                  4578899998876 689999999999887

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.93  E-value=2.1e-25  Score=196.48  Aligned_cols=160  Identities=17%  Similarity=0.129  Sum_probs=115.2

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-------CCc------eEEeeccch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-------NGR------NIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-------~g~------~i~~~~~~~   69 (240)
                      .++|+++|+++.|     ++++||+|.+|++++|+||||||||||+ ++|+|+..       .|.      ++.......
T Consensus        43 ~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl-~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~  121 (305)
T PRK14264         43 DAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFL-RCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL  121 (305)
T ss_pred             CceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccccccCCCCCceEEEECCEEcccccccH
Confidence            4589999999998     8999999999999999999999999999 99999741       332      221100000


Q ss_pred             hcccCCCeEEEccCceecceecCcchhHH--------------------------------H----------h-------
Q 026304           70 DTRYAIDSVVTHDGAKLPCWALPELTSFR--------------------------------Q----------K-------  100 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------------------~----------~-------  100 (240)
                      .......+|++|+..+++. ++.++..+.                                .          .       
T Consensus       122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  200 (305)
T PRK14264        122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG  200 (305)
T ss_pred             HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence            1111235899988765432 333222110                                0          0       


Q ss_pred             ----------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304          101 ----------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus       101 ----------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                                +...++.+|++||||||++      +..+.++|+++++  +.|||++|||++++          ..+||+
T Consensus       201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~~i----------~~~~d~  268 (305)
T PRK14264        201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQQA----------ARISDQ  268 (305)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHHHH----------HHhcCE
Confidence                      0122589999999999988      4578899998875  48999999999999          899999


Q ss_pred             e-eeecc-eeeccCCccee
Q 026304          165 V-TKLTA-RCELCGKRAFF  181 (240)
Q Consensus       165 i-~~l~~-~~~~~g~~~~~  181 (240)
                      + ++|++ ++...|+++.+
T Consensus       269 i~~~l~~G~i~~~g~~~~~  287 (305)
T PRK14264        269 TAVFLTGGELVEYDDTDKI  287 (305)
T ss_pred             EEEEecCCEEEEeCCHHHH
Confidence            7 56788 88877776543

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.93  E-value=2.6e-26  Score=183.76  Aligned_cols=160  Identities=19%  Similarity=0.169  Sum_probs=128.1

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccc-------
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSS-------   68 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~-------   68 (240)
                      +.|+++|+.++|     |++|||+-.+|+++.|+|.+||||||+| |||+=+        ..+|..+...+..       
T Consensus         5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfL-RCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFL-RCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHH-HHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            468999999999     9999999999999999999999999999 999765        2345544432211       


Q ss_pred             ---h--hcccCCCeEEEccCceecceecCcchhH--------------------HHh-----------------------
Q 026304           69 ---K--DTRYAIDSVVTHDGAKLPCWALPELTSF--------------------RQK-----------------------  100 (240)
Q Consensus        69 ---~--~~~~~~~~~v~q~~~~~~~~~~~~~~~~--------------------~~~-----------------------  100 (240)
                         .  +.|. ..++|||..+++..+|+.+|.--                    ..+                       
T Consensus        84 d~~q~~r~Rs-~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~a  162 (256)
T COG4598          84 DKRQLQRLRT-RLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVA  162 (256)
T ss_pred             CHHHHHHHHH-HhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHH
Confidence               0  1122 23899999999999988766421                    011                       


Q ss_pred             hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          101 LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      ++..++.+|+++|+||||+      ..++++.++++++ +|+|.+++||.+.|+          ...++++++|++ .+.
T Consensus       163 IARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~FA----------R~Vss~v~fLh~G~iE  231 (256)
T COG4598         163 IARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGFA----------RDVSSHVIFLHQGKIE  231 (256)
T ss_pred             HHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhHH----------HhhhhheEEeecceec
Confidence            0223689999999999999      2478999999998 799999999999999          999999999999 999


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+|+++
T Consensus       232 E~G~P~qv  239 (256)
T COG4598         232 EEGPPEQV  239 (256)
T ss_pred             ccCChHHH
Confidence            99999763

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.2e-25  Score=182.75  Aligned_cols=157  Identities=18%  Similarity=0.182  Sum_probs=126.6

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc----------hhCCceEEeeccchhcc
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE----------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl----------~~~g~~i~~~~~~~~~~   72 (240)
                      .||+++||+++.      |++|||+|++||+.+|+||||||||||. ++|+|.          .++|+++..+++..+.|
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa-~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr   80 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLA-YTIMGHPKYEVTEGEILFDGEDILELSPDERAR   80 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHH-HHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence            479999999875      8999999999999999999999999999 999995          57899999999988888


Q ss_pred             cCCCeEEEccCceecceecCcchhH---------------HHhh-----------------------ch---------hh
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSF---------------RQKL-----------------------GD---------DA  105 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~---------------~~~~-----------------------~~---------~l  105 (240)
                      .+. .+.||.+.-++..++.+.+..               ...+                       +|         .+
T Consensus        81 ~Gi-fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~  159 (251)
T COG0396          81 AGI-FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL  159 (251)
T ss_pred             cCC-EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence            774 678898877766554432211               1000                       11         14


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhc--cceeeecc-eeeccC
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLA--DTVTKLTA-RCELCG  176 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~a--d~i~~l~~-~~~~~g  176 (240)
                      +.+|++.+||||.+      .+.+.+.+.++++ .|.+++++||.-+.+           .+.  |++.+|-+ +++..|
T Consensus       160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~rll-----------~~i~pD~vhvl~~GrIv~sG  227 (251)
T COG0396         160 LLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQRLL-----------DYIKPDKVHVLYDGRIVKSG  227 (251)
T ss_pred             hcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHHHH-----------hhcCCCEEEEEECCEEEecC
Confidence            88999999999988      3467788888887 799999999998766           444  99999999 999888


Q ss_pred             Ccc
Q 026304          177 KRA  179 (240)
Q Consensus       177 ~~~  179 (240)
                      .++
T Consensus       228 ~~e  230 (251)
T COG0396         228 DPE  230 (251)
T ss_pred             CHH
Confidence            883

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.93  E-value=4.2e-25  Score=178.17  Aligned_cols=137  Identities=18%  Similarity=0.126  Sum_probs=101.0

Q ss_pred             EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccC
Q 026304           11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDG   83 (240)
Q Consensus        11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~   83 (240)
                      |+++|++++|      ++++||++++|++++|+||||||||||+ ++|+|+. .....+.. ..    + ...+|++|+.
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~-~~----~-~~i~~~~q~~   73 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLF-RALAGLWPWGSGRIGM-PE----G-EDLLFLPQRP   73 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEE-CC----C-ceEEEECCCC
Confidence            4678888877      7999999999999999999999999999 9999973 22222322 11    1 2347889887


Q ss_pred             ceecceecCcchhHH------------HhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304           84 AKLPCWALPELTSFR------------QKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~------------~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                      .++ ..++.++..+.            ..+...++.+|++++||||++      ...+.++++++    +.|+|++|||+
T Consensus        74 ~~~-~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~  148 (166)
T cd03223          74 YLP-LGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP  148 (166)
T ss_pred             ccc-cccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh
Confidence            654 44666665431            112445789999999999988      23455555443    68999999998


Q ss_pred             hhhhcccchHHHHHhhccceeeecc
Q 026304          146 DYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       146 ~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +..           .+||++++|++
T Consensus       149 ~~~-----------~~~d~i~~l~~  162 (166)
T cd03223         149 SLW-----------KFHDRVLDLDG  162 (166)
T ss_pred             hHH-----------hhCCEEEEEcC
Confidence            765           69999999976

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.93  E-value=3.9e-25  Score=174.40  Aligned_cols=130  Identities=19%  Similarity=0.140  Sum_probs=97.3

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCc
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGA   84 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~   84 (240)
                      ++++|++++|     ++++||++++||+++|+||||||||||+ ++|+|+.. ..-.+... .    + ...+|++|   
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl-~~l~G~~~~~~G~i~~~-~----~-~~i~~~~~---   70 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLL-KLIAGELEPDEGIVTWG-S----T-VKIGYFEQ---   70 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHH-HHHcCCCCCCceEEEEC-C----e-EEEEEEcc---
Confidence            4678999887     8999999999999999999999999999 99999732 22222221 1    1 12366766   


Q ss_pred             eecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHH
Q 026304           85 KLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDI  158 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L  158 (240)
                            +.........+...++.+|+++++|||++      +..+.+.++++    +.|++++||+++++          
T Consensus        71 ------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~~~----------  130 (144)
T cd03221          71 ------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRYFL----------  130 (144)
T ss_pred             ------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHHHH----------
Confidence                  22222333345667899999999999987      33566666554    46999999999999          


Q ss_pred             Hhhccceeeecc
Q 026304          159 IPLADTVTKLTA  170 (240)
Q Consensus       159 ~~~ad~i~~l~~  170 (240)
                      ..+||++++|++
T Consensus       131 ~~~~d~v~~l~~  142 (144)
T cd03221         131 DQVATKIIELED  142 (144)
T ss_pred             HHhCCEEEEEeC
Confidence            899999999875

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.93  E-value=2.4e-25  Score=184.21  Aligned_cols=133  Identities=19%  Similarity=0.086  Sum_probs=98.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++|+++.|     ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++....  ...+ ...+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~-~~i~   76 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLL-RILAGLLRPDSGEVRWNGTALAEQR--DEPH-RNIL   76 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccch--HHhh-hheE
Confidence            4788999988     8999999999999999999999999999 9999972        2333332221  1111 2347


Q ss_pred             EEEccCceecceecCcchhHHHhh--------------------------------------chhhhccCcEEEEcCccC
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKL--------------------------------------GDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~l~~~p~lllLDEP~~  119 (240)
                      |++|...+++..++.++..+....                                      ...++.+|++|+||||++
T Consensus        77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~  156 (198)
T TIGR01189        77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT  156 (198)
T ss_pred             EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            888877666666665554321100                                      112588999999999988


Q ss_pred             ------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          120 ------FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       120 ------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                            ...+.+.|.++++ .|.|||++||+....
T Consensus       157 ~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~~  190 (198)
T TIGR01189       157 ALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLGL  190 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccccc
Confidence                  4578889988876 689999999998655

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.1e-25  Score=210.27  Aligned_cols=156  Identities=15%  Similarity=0.135  Sum_probs=112.3

Q ss_pred             ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeecc------chhc
Q 026304            9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKS------SKDT   71 (240)
Q Consensus         9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~------~~~~   71 (240)
                      .+|+++|+++.|        ++++||++.+||+++|+||||||||||+ ++|+|+..   .|. +.....      ....
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~~G~-i~~~g~~~~~~~~~~~  333 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELV-QALFGAYPGKFEGN-VFINGKPVDIRNPAQA  333 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHH-HHHhCCCCCCCCeE-EEECCEECCCCCHHHH
Confidence            489999999865        7899999999999999999999999999 99999832   332 222110      0011


Q ss_pred             ccCCCeEEEccC---ceecceecCcchhH------------------------HHhh-----------------------
Q 026304           72 RYAIDSVVTHDG---AKLPCWALPELTSF------------------------RQKL-----------------------  101 (240)
Q Consensus        72 ~~~~~~~v~q~~---~~~~~~~~~~~~~~------------------------~~~~-----------------------  101 (240)
                      .....+|++|+.   .+++.+++.++..+                        ...+                       
T Consensus       334 ~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~  413 (500)
T TIGR02633       334 IRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAV  413 (500)
T ss_pred             HhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHH
Confidence            112358999874   24443333222111                        0000                       


Q ss_pred             -chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          102 -GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       102 -~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                       ...++.+|++|||||||+      +..++++|+++++ +|.|||++|||++++          ..+||++++|++ ++.
T Consensus       414 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~~~----------~~~~d~v~~l~~G~i~  482 (500)
T TIGR02633       414 LAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEV----------LGLSDRVLVIGEGKLK  482 (500)
T ss_pred             HHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHHHH----------HHhCCEEEEEECCEEE
Confidence             112578999999999988      4578889999887 699999999999999          999999999988 766


Q ss_pred             ccCC
Q 026304          174 LCGK  177 (240)
Q Consensus       174 ~~g~  177 (240)
                      ...+
T Consensus       483 ~~~~  486 (500)
T TIGR02633       483 GDFV  486 (500)
T ss_pred             EEEc
Confidence            5443

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.92  E-value=1.9e-25  Score=208.45  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=111.6

Q ss_pred             CceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304            8 PAAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus         8 ~~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      .++|+++|+++.+   ++++||++++||+++|+||||||||||+ ++|+|+.        ++|+++...++....+ ...
T Consensus       248 ~~~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~-~~i  325 (491)
T PRK10982        248 EVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIV-ETLFGIREKSAGTITLHGKKINNHNANEAIN-HGF  325 (491)
T ss_pred             CcEEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHH-HHHcCCCcCCccEEEECCEECCCCCHHHHHH-CCC
Confidence            4589999999887   9999999999999999999999999999 9999972        2333332211111111 224


Q ss_pred             eEEEccCc---eecceecC-----cch--------------------hHHHh------------------------hchh
Q 026304           77 SVVTHDGA---KLPCWALP-----ELT--------------------SFRQK------------------------LGDD  104 (240)
Q Consensus        77 ~~v~q~~~---~~~~~~~~-----~~~--------------------~~~~~------------------------~~~~  104 (240)
                      +|++|+..   +++.+++.     ++.                    .+...                        ++..
T Consensus       326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  405 (491)
T PRK10982        326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW  405 (491)
T ss_pred             EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence            67776531   22322211     000                    00000                        0112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|||||||+      +..+++++.++.+ +|.|||++|||++++          ..+|||+++|++ ++...++
T Consensus       406 l~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~~~----------~~~~d~v~~l~~g~i~~~~~  474 (491)
T PRK10982        406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPEL----------LGITDRILVMSNGLVAGIVD  474 (491)
T ss_pred             HhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChHHH----------HhhCCEEEEEECCEEEEEEc
Confidence            588999999999988      4578899999887 699999999999999          999999999988 7764443

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.92  E-value=1.1e-25  Score=217.59  Aligned_cols=153  Identities=21%  Similarity=0.134  Sum_probs=118.4

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++||+++|       |+|+||+|++||.++|+||||||||||+ ++|+|+        .++|.++..+++... | .
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~l-r-~  527 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLL-RLLLGFETPESGSVFYDGQDLAGLDVQAV-R-R  527 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCEEEECCEEcCcCCHHHH-H-h
Confidence            59999999998       8999999999999999999999999999 999997        356777666554332 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~  108 (240)
                      ..+|++|++.+|+. |+.+|..+..                     .                         +++.++++
T Consensus       528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~  606 (686)
T TIGR03797       528 QLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK  606 (686)
T ss_pred             ccEEEccCCccCcc-cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            46999999988765 4544443210                     0                         01225899


Q ss_pred             CcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+ .     ..+.+.|+++    ++|+|++||+++.+           ..||+|++|++ +++.+|+.+++
T Consensus       607 p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~~i-----------~~~D~Iivl~~G~iv~~G~~~~L  671 (686)
T TIGR03797       607 PRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLSTI-----------RNADRIYVLDAGRVVQQGTYDEL  671 (686)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChHHH-----------HcCCEEEEEECCEEEEECCHHHH
Confidence            99999999998 2     2455555443    57999999999887           56999999999 99989987654

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.92  E-value=1.7e-25  Score=232.07  Aligned_cols=163  Identities=16%  Similarity=0.128  Sum_probs=130.6

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      +.|+++||++.|       ++++||++++||+++|+||||||||||+ ++|+|+.        ++|.++..  .....+ 
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLL-kiLaGLl~PtsG~I~i~G~dI~~--~~~~~r- 1002 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTL-SILTGLLPPTSGTVLVGGKDIET--NLDAVR- 1002 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHH-HHHhcCCCCCceEEEECCEECcc--hHHHHh-
Confidence            479999999988       7899999999999999999999999999 9999982        34544421  111112 


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      ...++++|+..+++.+|+.+++.+..++                                          +..++.+|++
T Consensus      1003 ~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257      1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred             hcEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            2358999999888888888776553221                                          0115889999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLR  184 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~  184 (240)
                      |||||||+      +..++++|++++  +|+|||++|||++++          ..+||||++|++ ++..+|++..+..+
T Consensus      1083 LLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdmdea----------~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257      1083 VVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHMDEA----------DLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred             EEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEecCHHHHHHh
Confidence            99999988      567999999984  489999999999999          899999999999 88889998776655


Q ss_pred             ecC
Q 026304          185 KTE  187 (240)
Q Consensus       185 ~~~  187 (240)
                      +..
T Consensus      1151 ~g~ 1153 (2272)
T TIGR01257      1151 FGT 1153 (2272)
T ss_pred             cCC
Confidence            543

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.92  E-value=9.2e-25  Score=177.89  Aligned_cols=132  Identities=19%  Similarity=0.070  Sum_probs=99.1

Q ss_pred             cceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceec
Q 026304           14 NQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP   87 (240)
Q Consensus        14 ~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~   87 (240)
                      .|++++|     +++ +|++++|++++|+||||||||||+ ++|+|+. .++..+.....       ..++++|...   
T Consensus         4 ~~l~~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~-------~i~~~~q~~~---   71 (177)
T cd03222           4 PDCVKRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAV-KILAGQLIPNGDNDEWDGI-------TPVYKPQYID---   71 (177)
T ss_pred             CCeEEEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCcEEEECCE-------EEEEEcccCC---
Confidence            5778887     667 599999999999999999999999 9999973 22222322110       1356676543   


Q ss_pred             ceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh
Q 026304           88 CWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL  161 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~  161 (240)
                         +.........++..++.+|++++||||++      +..+.+.+.+++++.+.|||++|||++++          ..+
T Consensus        72 ---LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~----------~~~  138 (177)
T cd03222          72 ---LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVL----------DYL  138 (177)
T ss_pred             ---CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHH----------HHh
Confidence               22222333345566889999999999988      45688888888763348999999999999          889


Q ss_pred             ccceeeecc
Q 026304          162 ADTVTKLTA  170 (240)
Q Consensus       162 ad~i~~l~~  170 (240)
                      ||++++|++
T Consensus       139 ~d~i~~l~~  147 (177)
T cd03222         139 SDRIHVFEG  147 (177)
T ss_pred             CCEEEEEcC
Confidence            999999987

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.92  E-value=1.4e-25  Score=213.04  Aligned_cols=155  Identities=12%  Similarity=0.051  Sum_probs=119.3

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|++++|       ++|+||+|++|+.++|+||||||||||+ ++|+|+        .++|.++..++...  .+.
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~--~~~  417 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIA-NLLTRFYDIDEGEILLDGHDLRDYTLAS--LRN  417 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHH-HHHHhccCCCCceEEECCEEhhhcCHHH--HHh
Confidence            59999999998       8999999999999999999999999999 999997        34555554443322  223


Q ss_pred             CCeEEEccCceecceecCcchhHH-----------------------Hhh-------------------------chhhh
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-------------------------GDDAY  106 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-------------------------~~~l~  106 (240)
                      ..+|++|++.+|+. |+.+|..+.                       ..+                         .+.++
T Consensus       418 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall  496 (582)
T PRK11176        418 QVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL  496 (582)
T ss_pred             hceEEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence            46899999888764 444333321                       000                         12258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      ++|++|+|||||+      ...+++.|.++.  .++|+|++||+++.+           ..||+|++|++ ++...|+.+
T Consensus       497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~~~-----------~~~D~Ii~l~~g~i~e~g~~~  563 (582)
T PRK11176        497 RDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLSTI-----------EKADEILVVEDGEIVERGTHA  563 (582)
T ss_pred             hCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchHHH-----------HhCCEEEEEECCEEEEeCCHH
Confidence            9999999999988      236777787764  368999999999876           67999999999 888888876


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      ++
T Consensus       564 ~l  565 (582)
T PRK11176        564 EL  565 (582)
T ss_pred             HH
Confidence            54

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.92  E-value=1.5e-25  Score=192.79  Aligned_cols=156  Identities=16%  Similarity=0.077  Sum_probs=113.4

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      .+|+++|++++|       ++++||++++|++++|+|+||||||||+ ++|+|+.        ++|+++...+.. ..+ 
T Consensus        18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~i~g~~i~~~~~~-~~~-   94 (257)
T cd03288          18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS-LAFFRMVDIFDGKIVIDGIDISKLPLH-TLR-   94 (257)
T ss_pred             ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHH-HHHHcccCCCCCeEEECCEEhhhCCHH-HHh-
Confidence            479999999987       7899999999999999999999999999 9999972        234333222111 112 


Q ss_pred             CCCeEEEccCceecceecCcchhH---------H------------Hh-------------------------hchhhhc
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSF---------R------------QK-------------------------LGDDAYA  107 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~---------~------------~~-------------------------~~~~l~~  107 (240)
                      ...+|++|++.+++. ++.++...         .            ..                         +...++.
T Consensus        95 ~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          95 SRLSIILQDPILFSG-SIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             hhEEEECCCCccccc-HHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            234788888765542 32211100         0            00                         0122589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+||||++      ...+.++++++.  ++.|||++||+++.+          .. |||+++|++ ++...|+++.
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~~----------~~-~dri~~l~~G~i~~~g~~~~  240 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVSTI----------LD-ADLVLVLSRGILVECDTPEN  240 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHHH----------Hh-CCEEEEEECCEEEEeCCHHH
Confidence            999999999987      346778887763  479999999999998          64 999999999 8888887664


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       241 ~  241 (257)
T cd03288         241 L  241 (257)
T ss_pred             H
Confidence            4

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.92  E-value=5.2e-25  Score=186.32  Aligned_cols=149  Identities=13%  Similarity=0.052  Sum_probs=106.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------CCceEEeeccc---hhcccCCCeEEEccCc--eecce
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------NGRNIAMIKSS---KDTRYAIDSVVTHDGA--KLPCW   89 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------~g~~i~~~~~~---~~~~~~~~~~v~q~~~--~~~~~   89 (240)
                      ++++||++++|++++|+||||||||||+ ++|+|+..      .|. +......   ...+....+|++|++.  +.+.+
T Consensus         2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~~~~~G~-i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~   79 (230)
T TIGR02770         2 VQDLNLSLKRGEVLALVGESGSGKSLTC-LAILGLLPPGLTQTSGE-ILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF   79 (230)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCccCccccE-EEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence            5799999999999999999999999999 99999832      343 3221111   1111123589998863  33333


Q ss_pred             ecCcchhH-------------------H------------Hh--------------hchhhhccCcEEEEcCccC-----
Q 026304           90 ALPELTSF-------------------R------------QK--------------LGDDAYAKLDVIGIDEAQF-----  119 (240)
Q Consensus        90 ~~~~~~~~-------------------~------------~~--------------~~~~l~~~p~lllLDEP~~-----  119 (240)
                      ++.++..+                   .            ..              ++..++.+|++|+||||++     
T Consensus        80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~  159 (230)
T TIGR02770        80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV  159 (230)
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence            33221100                   0            00              0112588999999999988     


Q ss_pred             -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                       ...+.+.|++++++.|.|||++||+++++          ..+||++++|++ ++...|+++.+
T Consensus       160 ~~~~l~~~l~~~~~~~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~  213 (230)
T TIGR02770       160 NQARVLKLLRELRQLFGTGILLITHDLGVV----------ARIADEVAVMDDGRIVERGTVKEI  213 (230)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence             34688889988764589999999999999          899999999999 88877776543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.92  E-value=8.4e-25  Score=182.72  Aligned_cols=142  Identities=19%  Similarity=0.076  Sum_probs=100.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR   98 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~   98 (240)
                      |+||||++++||.+||+|+||||||||| |+|+|...  .|+-...-........   +     ..+.+.+|..+|..+.
T Consensus        43 L~disf~i~~Ge~vGiiG~NGaGKSTLl-kliaGi~~Pt~G~v~v~G~v~~li~l---g-----~Gf~pelTGreNi~l~  113 (249)
T COG1134          43 LKDISFEIYKGERVGIIGHNGAGKSTLL-KLIAGIYKPTSGKVKVTGKVAPLIEL---G-----AGFDPELTGRENIYLR  113 (249)
T ss_pred             ecCceEEEeCCCEEEEECCCCCcHHHHH-HHHhCccCCCCceEEEcceEehhhhc---c-----cCCCcccchHHHHHHH
Confidence            7899999999999999999999999999 99999732  2321111000000000   0     1112334444443332


Q ss_pred             Hhh------------------------------------------chhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304           99 QKL------------------------------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNA  130 (240)
Q Consensus        99 ~~~------------------------------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l  130 (240)
                      ..+                                          +-....+|++||+||..+      ++...+.+.++
T Consensus       114 ~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~  193 (249)
T COG1134         114 GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL  193 (249)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence            221                                          111367999999999844      56788888888


Q ss_pred             HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      .+ ++.|||+||||++.+          .++|||++.|++ ++...|++++..
T Consensus       194 ~~-~~~tiv~VSHd~~~I----------~~~Cd~~i~l~~G~i~~~G~~~~vi  235 (249)
T COG1134         194 VE-KNKTIVLVSHDLGAI----------KQYCDRAIWLEHGQIRMEGSPEEVI  235 (249)
T ss_pred             HH-cCCEEEEEECCHHHH----------HHhcCeeEEEeCCEEEEcCCHHHHH
Confidence            76 579999999999999          999999999999 999999887543

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.92  E-value=2.3e-25  Score=187.93  Aligned_cols=139  Identities=19%  Similarity=0.099  Sum_probs=100.0

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      +.+++++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++....      .. ..
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~l~G~~~p~~G~i~~~g~~~~~~~------~~-~~   94 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLL-RLLAGIYPPDSGTVTVRGRVSSLLG------LG-GG   94 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEEchhhc------cc-cc
Confidence            6788999988     9999999999999999999999999999 9999972        2232221000      00 00


Q ss_pred             EEEccCceecceecCcchhH-------------------HH-----------------------hhchhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSF-------------------RQ-----------------------KLGDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~-------------------~~-----------------------~~~~~l~~~p~lllLD  115 (240)
                      +       .+..++.++..+                   ..                       .+...++.+|++||||
T Consensus        95 ~-------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  167 (224)
T cd03220          95 F-------NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID  167 (224)
T ss_pred             C-------CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            1       111111111110                   00                       0122368999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ||++      +..+.+.|+++++ .|.|||++|||++++          ..+||++++|++ ++...
T Consensus       168 EP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sH~~~~~----------~~~~d~i~~l~~G~i~~~  223 (224)
T cd03220         168 EVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDPSSI----------KRLCDRALVLEKGKIRFD  223 (224)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEec
Confidence            9987      4578899998876 589999999999999          899999999998 76543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.92  E-value=1.9e-25  Score=212.61  Aligned_cols=155  Identities=15%  Similarity=0.081  Sum_probs=120.7

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .++++|++++|      ++|+||++++||.++|+|+||||||||+ ++|.|+        .++|.++..+++..  .+..
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~--l~~~  416 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLA-SLLMGYYPLTEGEIRLDGRPLSSLSHSV--LRQG  416 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcccCCCCceEEECCEEhhhCCHHH--HHhh
Confidence            59999999998      8999999999999999999999999999 999997        34555555443322  2234


Q ss_pred             CeEEEccCceecceecCcchhHHH---------------------hh-------------------------chhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ---------------------KL-------------------------GDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~---------------------~~-------------------------~~~l~~~p  109 (240)
                      .+|++|++.+|+. |+.+|..+..                     .+                         .+.++.+|
T Consensus       417 i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~  495 (592)
T PRK10790        417 VAMVQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP  495 (592)
T ss_pred             eEEEccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            6899999988875 5554443211                     00                         12258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|+|||||+      ...+.+.|+++.+  ++|+|++||+++.+           ..||+|++|++ ++...|+++++
T Consensus       496 ~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~~~l-----------~~~D~ii~l~~G~i~~~G~~~~L  561 (592)
T PRK10790        496 QILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRLSTI-----------VEADTILVLHRGQAVEQGTHQQL  561 (592)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecchHHH-----------HhCCEEEEEECCEEEEEcCHHHH
Confidence            9999999988      2367778877754  68999999999876           67999999999 99888887654

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.92  E-value=1e-24  Score=188.37  Aligned_cols=140  Identities=14%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhH-
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF-   97 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~-   97 (240)
                      ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +.... .       ..+++|...+.+.+++.++..+ 
T Consensus        40 l~~is~~i~~Ge~~~liG~NGsGKSTLl-k~L~Gl~~p~~G~-I~~~g-~-------~~~~~~~~~~~~~~tv~enl~~~  109 (264)
T PRK13546         40 LDDISLKAYEGDVIGLVGINGSGKSTLS-NIIGGSLSPTVGK-VDRNG-E-------VSVIAISAGLSGQLTGIENIEFK  109 (264)
T ss_pred             EeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCcCCCceE-EEECC-E-------EeEEecccCCCCCCcHHHHHHHH
Confidence            5799999999999999999999999999 9999972  2232 21110 0       0111121111111122111110 


Q ss_pred             ------------------H-----------------------HhhchhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304           98 ------------------R-----------------------QKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNA  130 (240)
Q Consensus        98 ------------------~-----------------------~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l  130 (240)
                                        .                       ..+...++.+|++||||||++      +..+++.|.++
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~  189 (264)
T PRK13546        110 MLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF  189 (264)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence                              0                       001223688999999999987      34788888888


Q ss_pred             HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      .+ .|.|||++||+++++          ..+||++++|++ ++...|+++.+
T Consensus       190 ~~-~g~tiIiisH~~~~i----------~~~~d~i~~l~~G~i~~~g~~~~~  230 (264)
T PRK13546        190 KE-QNKTIFFVSHNLGQV----------RQFCTKIAWIEGGKLKDYGELDDV  230 (264)
T ss_pred             HH-CCCEEEEEcCCHHHH----------HHHcCEEEEEECCEEEEeCCHHHH
Confidence            75 689999999999999          899999999998 88777776543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.92  E-value=2.4e-25  Score=187.68  Aligned_cols=147  Identities=17%  Similarity=0.156  Sum_probs=105.9

Q ss_pred             CCceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC------ceEEeeccchh
Q 026304            7 KPAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG------RNIAMIKSSKD   70 (240)
Q Consensus         7 ~~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g------~~i~~~~~~~~   70 (240)
                      ..++++++|+++.|        ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|      .++.....  .
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~~G~i~~~g~~~~~~~~--~   84 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLLDGKPISQYEH--K   84 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCcEEEECCCchHHcCH--H
Confidence            34689999999987        7899999999999999999999999999 9999972  223      32221111  1


Q ss_pred             cccCCCeEEEccCceecceecCcchhH----------------------HHhh-------------------------ch
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSF----------------------RQKL-------------------------GD  103 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~----------------------~~~~-------------------------~~  103 (240)
                      .+....+|++|+..+++ .++.++..+                      ...+                         ..
T Consensus        85 ~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lar  163 (226)
T cd03248          85 YLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIAR  163 (226)
T ss_pred             HHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHH
Confidence            11223578888765543 233222210                      0000                         11


Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .++.+|++||||||++      +..+.+.|+++.+  +.|||++|||++++          .. ||++++|++
T Consensus       164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~----------~~-~d~i~~l~~  223 (226)
T cd03248         164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRLSTV----------ER-ADQILVLDG  223 (226)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHH----------Hh-CCEEEEecC
Confidence            2589999999999988      4578888888764  58999999999998          64 999999976

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.92  E-value=1.3e-25  Score=217.52  Aligned_cols=157  Identities=18%  Similarity=0.132  Sum_probs=121.7

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++|++++|       |+|+||+|++||.++|+||||||||||+ ++|.|+        .++|.++..++.... | .
T Consensus       463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~l~~~~~~~l-r-~  539 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLL-KLLLGLYQPTEGSVLLDGVDIRQIDPADL-R-R  539 (694)
T ss_pred             eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHHH-H-h
Confidence            59999999998       8899999999999999999999999999 999997        345655555443222 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~  107 (240)
                      ..+|++|++.+|+. |+.+|..+..                      .                         +++.++.
T Consensus       540 ~i~~v~Q~~~lf~~-TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~  618 (694)
T TIGR03375       540 NIGYVPQDPRLFYG-TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR  618 (694)
T ss_pred             ccEEECCChhhhhh-hHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            35899999887764 4444332210                      0                         0122689


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.|.++.+  ++|+|++||+++.+           ..||+|++|++ ++...|+.++
T Consensus       619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl~~~-----------~~~D~iivl~~G~i~e~G~~~e  685 (694)
T TIGR03375       619 DPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-----------DLVDRIIVMDNGRIVADGPKDQ  685 (694)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-----------HhCCEEEEEeCCEEEeeCCHHH
Confidence            999999999988      3467788877753  78999999999876           68999999999 9998998776


Q ss_pred             eee
Q 026304          181 FTL  183 (240)
Q Consensus       181 ~~~  183 (240)
                      +..
T Consensus       686 Ll~  688 (694)
T TIGR03375       686 VLE  688 (694)
T ss_pred             HHH
Confidence            543

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.92  E-value=2e-25  Score=212.34  Aligned_cols=155  Identities=15%  Similarity=0.053  Sum_probs=119.7

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      .++++||++.|      |+|+||++++|+.++|+||||||||||+ ++|.|+.       ++|.++..+++... | +..
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~-~lL~g~~p~~G~I~i~g~~i~~~~~~~l-r-~~i  425 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLL-NALLGFLPYQGSLKINGIELRELDPESW-R-KHL  425 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCcEEEECCEecccCCHHHH-H-hhe
Confidence            59999999755      8999999999999999999999999999 9999973       35555555443322 2 246


Q ss_pred             eEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhccC
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYAKL  109 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~~p  109 (240)
                      +|++|++.+|+. |+.+|..+..                      .+                         ++.++++|
T Consensus       426 ~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        426 SWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             EEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            899999988875 5554443320                      00                         12258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|+|||||+      ...+.+.|.++.  .++|+|++||+++.+           ..||+|++|++ ++...|+.+++
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~~i-----------~~aD~Iivl~~G~i~e~G~~~eL  570 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLEDL-----------AQWDQIWVMQDGQIVQQGDYAEL  570 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChHHH-----------HhCCEEEEEeCCeEeecCCHHHH
Confidence            9999999998      236777777775  478999999999877           67999999999 88888887654

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=1e-24  Score=207.12  Aligned_cols=150  Identities=16%  Similarity=0.036  Sum_probs=115.1

Q ss_pred             CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304            8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .++++++|++++|    |+++||+|.+||+++|+||||||||||+ ++|+|+.  ..|. +.. .      . ..+|++|
T Consensus       338 ~~~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLl-k~L~Gl~~p~~G~-I~~-~------~-~i~y~~Q  407 (590)
T PRK13409        338 ETLVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFA-KLLAGVLKPDEGE-VDP-E------L-KISYKPQ  407 (590)
T ss_pred             ceEEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceE-EEE-e------e-eEEEecc
Confidence            4589999999998    8999999999999999999999999999 9999973  2332 221 1      1 2467888


Q ss_pred             cCceecceecCcchhHHH--------------h-----------------------hchhhhccCcEEEEcCccC-----
Q 026304           82 DGAKLPCWALPELTSFRQ--------------K-----------------------LGDDAYAKLDVIGIDEAQF-----  119 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~--------------~-----------------------~~~~l~~~p~lllLDEP~~-----  119 (240)
                      +......+++.+++.+..              .                       ++..++.+|++|||||||+     
T Consensus       408 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~  487 (590)
T PRK13409        408 YIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE  487 (590)
T ss_pred             cccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence            765555555554433210              0                       0122588999999999988     


Q ss_pred             -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCC
Q 026304          120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGK  177 (240)
Q Consensus       120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~  177 (240)
                       +..+.++|++++++.|.|||++|||++++          ..+|||+++|+++....|.
T Consensus       488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~----------~~~aDrvivl~~~~~~~g~  536 (590)
T PRK13409        488 QRLAVAKAIRRIAEEREATALVVDHDIYMI----------DYISDRLMVFEGEPGKHGH  536 (590)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEcCcceeeee
Confidence             45789999999875689999999999999          8999999999885444443

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.92  E-value=1.8e-25  Score=216.92  Aligned_cols=154  Identities=12%  Similarity=0.043  Sum_probs=117.0

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++|++++|       |+|+||+|++||.++|+||||||||||+ ++|+|+        .++|.++..++.... | +
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~l-r-~  553 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIA-KLVAGLYQPWSGEILFDGIPREEIPREVL-A-N  553 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEeHHHCCHHHH-H-h
Confidence            69999999998       8999999999999999999999999999 999997        345555544433222 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~  107 (240)
                      ..+|++|++.+|+. |+.+|..+..                      .                         +++.+++
T Consensus       554 ~i~~v~Q~~~lf~g-Ti~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~  632 (710)
T TIGR03796       554 SVAMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVR  632 (710)
T ss_pred             heeEEecCChhhhc-cHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhh
Confidence            35899999888764 4444432210                      0                         0122589


Q ss_pred             cCcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+ .     ..+.+.|+   + .++|+|++||+++.+           ..||||++|++ +++.+|++++
T Consensus       633 ~p~iliLDEptS~LD~~te~~i~~~l~---~-~~~T~IiitHrl~~i-----------~~~D~Iivl~~G~i~~~G~~~~  697 (710)
T TIGR03796       633 NPSILILDEATSALDPETEKIIDDNLR---R-RGCTCIIVAHRLSTI-----------RDCDEIIVLERGKVVQRGTHEE  697 (710)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHH---h-cCCEEEEEecCHHHH-----------HhCCEEEEEeCCEEEEecCHHH
Confidence            999999999998 2     24555544   3 579999999999887           56999999999 9998998776


Q ss_pred             ee
Q 026304          181 FT  182 (240)
Q Consensus       181 ~~  182 (240)
                      +.
T Consensus       698 Ll  699 (710)
T TIGR03796       698 LW  699 (710)
T ss_pred             HH
Confidence            43

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.92  E-value=8.2e-25  Score=206.96  Aligned_cols=152  Identities=19%  Similarity=0.054  Sum_probs=111.7

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEE
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      ..+||+++||+++|      ++++||+|++|++++|+||||||||||| ++|+|+. ..+-.+... .    . ...+|+
T Consensus         3 ~~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLl-k~i~G~~~p~~G~i~~~-~----~-~~i~~v   75 (556)
T PRK11819          3 AQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFEGEARPA-P----G-IKVGYL   75 (556)
T ss_pred             ccEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEec-C----C-CEEEEE
Confidence            35699999999988      7899999999999999999999999999 9999973 222223211 1    1 124788


Q ss_pred             EccCceecceecCcchhHH------------------------------------------------Hh-----------
Q 026304           80 THDGAKLPCWALPELTSFR------------------------------------------------QK-----------  100 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~------------------------------------------------~~-----------  100 (240)
                      +|++.+++.+++.+++.+.                                                .+           
T Consensus        76 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  155 (556)
T PRK11819         76 PQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP  155 (556)
T ss_pred             ecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC
Confidence            9887766655555443210                                                00           


Q ss_pred             ------------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHH
Q 026304          101 ------------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVL  156 (240)
Q Consensus       101 ------------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~  156 (240)
                                        +...++.+|++||||||++      ...+.++|+++    +.|||++|||++++        
T Consensus       156 ~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~----~~tviiisHd~~~~--------  223 (556)
T PRK11819        156 PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY----PGTVVAVTHDRYFL--------  223 (556)
T ss_pred             cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC----CCeEEEEeCCHHHH--------
Confidence                              0112588999999999988      23455555543    35999999999999        


Q ss_pred             HHHhhccceeeecc-eee-ccCCcc
Q 026304          157 DIIPLADTVTKLTA-RCE-LCGKRA  179 (240)
Q Consensus       157 ~L~~~ad~i~~l~~-~~~-~~g~~~  179 (240)
                        ..+||+|++|++ ++. +.|+.+
T Consensus       224 --~~~~d~i~~l~~g~i~~~~g~~~  246 (556)
T PRK11819        224 --DNVAGWILELDRGRGIPWEGNYS  246 (556)
T ss_pred             --HhhcCeEEEEeCCEEEEecCCHH
Confidence              899999999998 764 666654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.92  E-value=8.7e-25  Score=205.71  Aligned_cols=149  Identities=12%  Similarity=0.131  Sum_probs=106.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      ||+++|++++|     ++++||+|++|++++|+||||||||||| ++|+|+.  ..|. +... .    + ...+|++|.
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl-~~l~Gl~~p~~G~-i~~~-~----~-~~i~~~~q~   72 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFM-KILGGDLEPSAGN-VSLD-P----N-ERLGKLRQD   72 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEec-C----C-CEEEEEecc
Confidence            58999999998     8999999999999999999999999999 9999973  2333 2211 1    0 113677776


Q ss_pred             CceecceecCcchhH---------------------------------------------------HH------------
Q 026304           83 GAKLPCWALPELTSF---------------------------------------------------RQ------------   99 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~---------------------------------------------------~~------------   99 (240)
                      ..+++.+++.++..+                                                   ..            
T Consensus        73 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  152 (530)
T PRK15064         73 QFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL  152 (530)
T ss_pred             CCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence            544443333222110                                                   00            


Q ss_pred             ------------hhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh
Q 026304          100 ------------KLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL  161 (240)
Q Consensus       100 ------------~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~  161 (240)
                                  .+...++.+|++|||||||+      +..+.++|.   + .|.|||++|||++++          ..+
T Consensus       153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~---~-~~~tiiivsHd~~~~----------~~~  218 (530)
T PRK15064        153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLN---E-RNSTMIIISHDRHFL----------NSV  218 (530)
T ss_pred             hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH---h-CCCeEEEEeCCHHHH----------Hhh
Confidence                        00122588999999999988      234444443   3 589999999999999          899


Q ss_pred             ccceeeecc-ee-eccCCcce
Q 026304          162 ADTVTKLTA-RC-ELCGKRAF  180 (240)
Q Consensus       162 ad~i~~l~~-~~-~~~g~~~~  180 (240)
                      ||++++|++ ++ .+.|+++.
T Consensus       219 ~d~i~~l~~g~i~~~~g~~~~  239 (530)
T PRK15064        219 CTHMADLDYGELRVYPGNYDE  239 (530)
T ss_pred             cceEEEEeCCEEEEecCCHHH
Confidence            999999999 77 46776653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.92  E-value=1.4e-24  Score=208.57  Aligned_cols=160  Identities=16%  Similarity=0.084  Sum_probs=123.5

Q ss_pred             ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh-
Q 026304            9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD-   70 (240)
Q Consensus         9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~-   70 (240)
                      +||+++|+++.|         ++++||++++||+++|+||||||||||+ ++|+|+        .++|+++...+.... 
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~   81 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLM-NILGCLDKPTSGTYRVAGQDVATLDADALA   81 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence            489999999987         7899999999999999999999999999 999997        234554443322211 


Q ss_pred             -cccCCCeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhc
Q 026304           71 -TRYAIDSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYA  107 (240)
Q Consensus        71 -~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~  107 (240)
                       .+....+|++|+..+++..++.++..+...                   +                       ...++.
T Consensus        82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~  161 (648)
T PRK10535         82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN  161 (648)
T ss_pred             HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence             112345899999888877666554432110                   0                       112588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+||||+.      ++.+.++++++.+ .|.|++++||+++.+           ..|||+++|++ ++..+|++++
T Consensus       162 ~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~  229 (648)
T PRK10535        162 GGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQVA-----------AQAERVIEIRDGEIVRNPPAQE  229 (648)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHHH-----------HhCCEEEEEECCEEEeecCccc
Confidence            999999999987      4578899998876 699999999999977           46999999999 8888887764


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      .
T Consensus       230 ~  230 (648)
T PRK10535        230 K  230 (648)
T ss_pred             c
Confidence            3

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.91  E-value=3.7e-25  Score=214.68  Aligned_cols=154  Identities=14%  Similarity=0.056  Sum_probs=118.4

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++|++|+|      |+|+||+|++|+.++|+||||||||||+ ++|.|+        .++|.++..+++... | ..
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLl-klL~gl~~p~~G~I~idg~~i~~~~~~~l-r-~~  549 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLA-KLLVGFFQARSGEILLNGFSLKDIDRHTL-R-QF  549 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCCcEEEECCEEHHHcCHHHH-H-Hh
Confidence            59999999998      8999999999999999999999999999 999997        345555554443322 2 23


Q ss_pred             CeEEEccCceecceecCcchhHHH-----------------------hh-------------------------chhhhc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ-----------------------KL-------------------------GDDAYA  107 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~l~~  107 (240)
                      .+|++|++.+|+. |+.+|..+..                       .+                         ++.+++
T Consensus       550 i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~  628 (708)
T TIGR01193       550 INYLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLT  628 (708)
T ss_pred             eEEEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhh
Confidence            5899999888765 4444433210                       00                         112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.|+++   .++|+|++||+++.+           ..||+|++|++ ++...|+.++
T Consensus       629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~~~-----------~~~D~i~~l~~G~i~~~G~~~~  694 (708)
T TIGR01193       629 DSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLSVA-----------KQSDKIIVLDHGKIIEQGSHDE  694 (708)
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchHHH-----------HcCCEEEEEECCEEEEECCHHH
Confidence            999999999998      23566777653   378999999999876           67999999999 8888888765


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       695 L  695 (708)
T TIGR01193       695 L  695 (708)
T ss_pred             H
Confidence            4

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.91  E-value=7.9e-25  Score=210.16  Aligned_cols=156  Identities=21%  Similarity=0.215  Sum_probs=118.6

Q ss_pred             EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccc-hhcccCCCeEEEcc
Q 026304           13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSS-KDTRYAIDSVVTHD   82 (240)
Q Consensus        13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~-~~~~~~~~~~v~q~   82 (240)
                      ++|+++.|     |+|+|+++++||+++|+||||||||||| ++|+|...    .|. +...... .....+..+|++|+
T Consensus        71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL-~iLaG~~~~~~~sG~-I~inG~~~~~~~~~~i~yv~Q~  148 (659)
T PLN03211         71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLL-NALAGRIQGNNFTGT-ILANNRKPTKQILKRTGFVTQD  148 (659)
T ss_pred             cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCceeEE-EEECCEECchhhccceEEECcc
Confidence            45666666     9999999999999999999999999999 99999732    232 2211110 01111235899999


Q ss_pred             CceecceecCcchhHHHhh--------------------------------------------------chhhhccCcEE
Q 026304           83 GAKLPCWALPELTSFRQKL--------------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~--------------------------------------------------~~~l~~~p~ll  112 (240)
                      ..+++.+|+.+++.+...+                                                  +.+++.+|++|
T Consensus       149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL  228 (659)
T PLN03211        149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL  228 (659)
T ss_pred             cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence            8888877777665442100                                                  01158899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||++      ...+++.|+++++ +|+|||+++|+++ .+          .++||++++|++ ++.+.|+++.+
T Consensus       229 lLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i----------~~~~D~iilL~~G~iv~~G~~~~~  294 (659)
T PLN03211        229 ILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRV----------YQMFDSVLVLSEGRCLFFGKGSDA  294 (659)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHH----------HHhhceEEEecCCcEEEECCHHHH
Confidence            9999988      4579999999987 6999999999998 47          799999999999 99999987543

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.91  E-value=3.1e-24  Score=171.26  Aligned_cols=137  Identities=23%  Similarity=0.193  Sum_probs=100.5

Q ss_pred             EcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccc-----hhcccCCCeEEEc
Q 026304           13 TNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSS-----KDTRYAIDSVVTH   81 (240)
Q Consensus        13 ~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~-----~~~~~~~~~~v~q   81 (240)
                      ++++++.|     ++++||++++|++++|+||||||||||+ ++|+|+.. ....+......     ........+|++|
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll-~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLL-RAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence            56777777     8999999999999999999999999999 99999732 11122211100     0111123467777


Q ss_pred             cCceecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchH
Q 026304           82 DGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV  155 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~  155 (240)
                               +.........+...++.+|++++||||++      ...+.+.+.++.+ .+.|++++||+++++       
T Consensus        81 ---------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~-------  143 (157)
T cd00267          81 ---------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELA-------  143 (157)
T ss_pred             ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH-------
Confidence                     22222333334566789999999999987      4578888888876 478999999999999       


Q ss_pred             HHHHhhccceeeecc
Q 026304          156 LDIIPLADTVTKLTA  170 (240)
Q Consensus       156 ~~L~~~ad~i~~l~~  170 (240)
                         ..+||+++.+++
T Consensus       144 ---~~~~d~i~~l~~  155 (157)
T cd00267         144 ---ELAADRVIVLKD  155 (157)
T ss_pred             ---HHhCCEEEEEeC
Confidence               888999998864

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.91  E-value=7.4e-25  Score=206.77  Aligned_cols=156  Identities=21%  Similarity=0.143  Sum_probs=118.1

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|++++|       ++|+||++++|+.++|+||||||||||+ ++|+|+.        ++|.++...+...  ...
T Consensus       316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~i~~~~~~~--~~~  392 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLA-RLIVGIWPPTSGSVRLDGADLKQWDRET--FGK  392 (544)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEehhhCCHHH--Hhh
Confidence            69999999988       8999999999999999999999999999 9999972        3444444333221  122


Q ss_pred             CCeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~~  107 (240)
                      ..+|++|++.+++. ++.+|..+.                      ..+                         ++.+++
T Consensus       393 ~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       393 HIGYLPQDVELFPG-TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             heEEecCCcccccc-cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            45899999887754 444433210                      000                         112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      .+.+.+.|.++.. .++|+|++||+++.+           ..||+|++|++ ++...|++++
T Consensus       472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~  539 (544)
T TIGR01842       472 DPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPSLL-----------GCVDKILVLQDGRIARFGERDE  539 (544)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEeeCCHHH
Confidence            999999999988      3467788888764 589999999999865           67999999999 8888887654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       540 l  540 (544)
T TIGR01842       540 V  540 (544)
T ss_pred             H
Confidence            3

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.2e-24  Score=184.41  Aligned_cols=149  Identities=16%  Similarity=0.141  Sum_probs=119.6

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccch--hcccCCCeEEEccCceecceecC
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSK--DTRYAIDSVVTHDGAKLPCWALP   92 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~--~~~~~~~~~v~q~~~~~~~~~~~   92 (240)
                      +++|..+.-.+++|.|+||||||||+ ++|+|+.        ++|.-+.......  ....+.+|||||+..+|+.+++.
T Consensus        16 ~a~~~~p~~GvTAlFG~SGsGKTsli-n~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVr   94 (352)
T COG4148          16 DANFTLPARGITALFGPSGSGKTSLI-NMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVR   94 (352)
T ss_pred             EEeccCCCCceEEEecCCCCChhhHH-HHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEe
Confidence            67888888679999999999999999 9999982        3444333221111  11122359999999999999999


Q ss_pred             cchhHHHhh------------------------------------chhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304           93 ELTSFRQKL------------------------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNA  130 (240)
Q Consensus        93 ~~~~~~~~~------------------------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l  130 (240)
                      .|+.+..+.                                    +..++.+|++|+||||.+      ..+++..|.++
T Consensus        95 gNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL  174 (352)
T COG4148          95 GNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERL  174 (352)
T ss_pred             cchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHH
Confidence            888764321                                    233789999999999966      35899999999


Q ss_pred             HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      .++.++.|+.|||.++++          .++||+|++|++ ++.+.|+.++.-
T Consensus       175 ~~e~~IPIlYVSHS~~Ev----------~RLAd~vV~le~GkV~A~g~~e~v~  217 (352)
T COG4148         175 RDEINIPILYVSHSLDEV----------LRLADRVVVLENGKVKASGPLEEVW  217 (352)
T ss_pred             HHhcCCCEEEEecCHHHH----------HhhhheEEEecCCeEEecCcHHHHh
Confidence            998899999999999999          999999999999 999999876543

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.91  E-value=5.2e-25  Score=213.68  Aligned_cols=158  Identities=14%  Similarity=0.119  Sum_probs=116.1

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++||+++|        |+|+||++++||.++|+||||||||||+ ++|.|+        .++|+++..++....  +
T Consensus       478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~idg~~i~~~~~~~l--r  554 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLYQPTGGQVLLDGVPLVQYDHHYL--H  554 (711)
T ss_pred             eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHHH--H
Confidence            59999999998        7899999999999999999999999999 999997        245555544433221  2


Q ss_pred             CCCeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~  106 (240)
                      ...+|++|++.+|+. |+.+|..+.                      ..+                         ++.++
T Consensus       555 ~~i~~v~Q~~~lF~g-TIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl  633 (711)
T TIGR00958       555 RQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV  633 (711)
T ss_pred             hhceEEecCcccccc-CHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence            235899999888764 444433221                      000                         12258


Q ss_pred             ccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          107 AKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       107 ~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ++|++|+|||||+ .+ +..+.+.+.....++|+|++||+++.+           ..||+|++|++ +++..|+++++.
T Consensus       634 ~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i-----------~~aD~IivL~~G~ive~Gt~~eL~  701 (711)
T TIGR00958       634 RKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTV-----------ERADQILVLKKGSVVEMGTHKQLM  701 (711)
T ss_pred             cCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHH-----------HhCCEEEEEECCEEEEeeCHHHHH
Confidence            9999999999998 22 222233332222579999999999876           66999999999 999889877643

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.91  E-value=2.8e-24  Score=198.84  Aligned_cols=152  Identities=15%  Similarity=0.046  Sum_probs=106.5

Q ss_pred             CceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCe
Q 026304            8 PAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus         8 ~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      .+|++++|+++.|        |+++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +.......        
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLL-kiLaGLl~P~sGe-I~I~G~~~--------   88 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLS-NLIAGVTMPNKGT-VDIKGSAA--------   88 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHH-HHHhCCCCCCceE-EEECCEee--------
Confidence            3589999998876        7899999999999999999999999999 9999973  1222 21110000        


Q ss_pred             EEEccCceecceecCcchhH------------------------------------------HHhhchhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSF------------------------------------------RQKLGDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~l~~~p~lllLD  115 (240)
                      ++.+...+.+.+++.++..+                                          +..++..++.+|++||||
T Consensus        89 ~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD  168 (549)
T PRK13545         89 LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID  168 (549)
T ss_pred             eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            00000001111111111100                                          000123368999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ||++      +..+++.|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       169 EPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl~~i----------~~l~DrIivL~~GkIv~~G~~~e  229 (549)
T PRK13545        169 EALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSLSQV----------KSFCTKALWLHYGQVKEYGDIKE  229 (549)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEECCHHH
Confidence            9988      3468888988876 689999999999999          899999999998 8888887654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.7e-24  Score=179.70  Aligned_cols=157  Identities=17%  Similarity=0.115  Sum_probs=108.0

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--------CCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--------NGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--------~g~~i~~~~~~~~~~~~   74 (240)
                      +++|+++|+++.|     |+|+||+|++||.++|+||||||||||| ++++|...        .|+......-..+.|. 
T Consensus        29 ~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL-~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk-  106 (257)
T COG1119          29 EPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLL-SLLTGEHPPSSGDVTLLGRRFGKGETIFELRK-  106 (257)
T ss_pred             cceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHH-HHHhcccCCCCCceeeeeeeccCCcchHHHHH-
Confidence            3579999999999     9999999999999999999999999999 99999733        2222211111111121 


Q ss_pred             CCeEEEcc--C--------------ceecceecCc-----c-----hhHHH-----------------------hhchhh
Q 026304           75 IDSVVTHD--G--------------AKLPCWALPE-----L-----TSFRQ-----------------------KLGDDA  105 (240)
Q Consensus        75 ~~~~v~q~--~--------------~~~~~~~~~~-----~-----~~~~~-----------------------~~~~~l  105 (240)
                      .+|+|+..  .              ..|....++.     .     ..+..                       .+++.+
T Consensus       107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRAL  186 (257)
T COG1119         107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARAL  186 (257)
T ss_pred             HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHH
Confidence            23444310  0              0011111111     0     00000                       113447


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhc-CCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccC
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADH-DGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~-~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      +.+|++||||||+.      +..+.+.|.+++.. .+.++|+|||..+++          ....++++.+++ +++..|
T Consensus       187 v~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi----------~~~~th~lll~~g~v~~~g  255 (257)
T COG1119         187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI----------PPCFTHRLLLKEGEVVAQG  255 (257)
T ss_pred             hcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc----------ccccceEEEeeCCceeecc
Confidence            99999999999977      45788889888762 378999999999999          899999999998 777655

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.91  E-value=9.9e-25  Score=207.64  Aligned_cols=155  Identities=16%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .++++|++++|      ++|+||++++|+.++|+|+||||||||+ ++|.|+        .++|.++..++...  .+..
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~p~~G~I~i~g~~i~~~~~~~--~r~~  410 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVTRAS--LRRN  410 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEhhhCCHHH--HHhh
Confidence            59999999998      8999999999999999999999999999 999997        34555555443322  2234


Q ss_pred             CeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~~  108 (240)
                      .+|++|++.+|+. |+.+|..+..                      .+                         ++.++++
T Consensus       411 i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~  489 (588)
T PRK13657        411 IAVVFQDAGLFNR-SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD  489 (588)
T ss_pred             eEEEecCcccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            6899999888764 4444332210                      00                         1225899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++++|||||+      ...+++.|.++.  .++|+|++||+++.+           +.||+|++|++ ++...|+.+++
T Consensus       490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~~~-----------~~~D~ii~l~~G~i~~~g~~~~l  556 (588)
T PRK13657        490 PPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLSTV-----------RNADRILVFDNGRVVESGSFDEL  556 (588)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHHHH-----------HhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999988      235777777664  379999999999876           67999999998 88877776544

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.2e-24  Score=198.27  Aligned_cols=157  Identities=18%  Similarity=0.157  Sum_probs=122.9

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      ..|+++|++++|      |+++||+|++||.+||+|+|||||||++ |+|.++       .++|+++.......  -++.
T Consensus       350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTil-r~LlrF~d~sG~I~IdG~dik~~~~~S--lR~~  426 (591)
T KOG0057|consen  350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTIL-RLLLRFFDYSGSILIDGQDIKEVSLES--LRQS  426 (591)
T ss_pred             CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHH-HHHHHHhccCCcEEECCeeHhhhChHH--hhhh
Confidence            369999999999      8999999999999999999999999999 999886       46777776654332  2235


Q ss_pred             CeEEEccCceecceecCcchhHH-------------H---------hh----------------c---------hhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR-------------Q---------KL----------------G---------DDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~-------------~---------~~----------------~---------~~l~~~  108 (240)
                      +++|||+..+|.+. +..|..+.             .         ++                +         +.++.+
T Consensus       427 Ig~VPQd~~LFndT-Il~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd  505 (591)
T KOG0057|consen  427 IGVVPQDSVLFNDT-ILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD  505 (591)
T ss_pred             eeEeCCcccccchh-HHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence            69999999988763 33222211             0         00                1         125899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |+++++||||+      -.++++.+....  .++|+|++-|+++.+           .-||+|+++++ ++...|+..++
T Consensus       506 a~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l~ll-----------~~~DkI~~l~nG~v~e~gth~el  572 (591)
T KOG0057|consen  506 APILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRLDLL-----------KDFDKIIVLDNGTVKEYGTHSEL  572 (591)
T ss_pred             CCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecchhH-----------hcCCEEEEEECCeeEEeccHHHH
Confidence            99999999999      236788887743  589999999999987           78999999999 88888887654


Q ss_pred             e
Q 026304          182 T  182 (240)
Q Consensus       182 ~  182 (240)
                      .
T Consensus       573 l  573 (591)
T KOG0057|consen  573 L  573 (591)
T ss_pred             h
Confidence            4

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=1.2e-24  Score=184.90  Aligned_cols=160  Identities=14%  Similarity=0.043  Sum_probs=117.5

Q ss_pred             ceEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeec
Q 026304            9 AAVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIK   66 (240)
Q Consensus         9 ~~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~   66 (240)
                      ++++++|+++.|              ++||||+|++||+++|+|+|||||||+- |+|.|+        .++|+++..++
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlg-r~i~~L~~pt~G~i~f~g~~i~~~~   81 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLG-RLILGLEEPTSGEILFEGKDITKLS   81 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHH-HHHHcCcCCCCceEEEcCcchhhcc
Confidence            478999999877              5689999999999999999999999999 999998        35666655443


Q ss_pred             cchhc-cc----CCCeEEEccCceecceecCcchhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCC
Q 026304           67 SSKDT-RY----AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDG  135 (240)
Q Consensus        67 ~~~~~-~~----~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g  135 (240)
                      ..... +.    ...+.-......++. .+.+....+-.++..++.+|+++++|||++      +.+++++|.++.++.|
T Consensus        82 ~~~~~~~v~elL~~Vgl~~~~~~ryPh-elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~  160 (268)
T COG4608          82 KEERRERVLELLEKVGLPEEFLYRYPH-ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG  160 (268)
T ss_pred             hhHHHHHHHHHHHHhCCCHHHhhcCCc-ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence            21111 00    001111111111221 122222223334566899999999999988      5689999999998889


Q ss_pred             CEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          136 KTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       136 ~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      .|.+++|||+..+          ..+||||.+|.. +++..|+.++
T Consensus       161 lt~lFIsHDL~vv----------~~isdri~VMy~G~iVE~g~~~~  196 (268)
T COG4608         161 LTYLFISHDLSVV----------RYISDRIAVMYLGKIVEIGPTEE  196 (268)
T ss_pred             CeEEEEEEEHHhh----------hhhcccEEEEecCceeEecCHHH
Confidence            9999999999999          999999999999 8888887654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.91  E-value=1.1e-24  Score=206.62  Aligned_cols=157  Identities=17%  Similarity=0.114  Sum_probs=123.8

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++|++++|      ++|+||++++||.++|+|||||||||++ ++|.|+        .++|.++..++.... |. .
T Consensus       328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~-~LL~r~~~~~~G~I~idg~dI~~i~~~~l-r~-~  404 (567)
T COG1132         328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLI-KLLLRLYDPTSGEILIDGIDIRDISLDSL-RK-R  404 (567)
T ss_pred             eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCEehhhcCHHHH-HH-h
Confidence            48999999999      7999999999999999999999999999 999997        345777766654332 22 3


Q ss_pred             CeEEEccCceecceecCcchhHHHh----------------------h-------------------------chhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK----------------------L-------------------------GDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~l~~~  108 (240)
                      .++|+|++.+|. -|+.+|..+...                      +                         ++.++.+
T Consensus       405 I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         405 IGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             ccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            579999999988 466655443210                      0                         1125899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+      ...+.+.+.++.+  ++|+++++|.++.+          .. ||+|++|++ ++...|+++++
T Consensus       484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRlsti----------~~-aD~IiVl~~G~i~e~G~h~eL  550 (567)
T COG1132         484 PPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRLSTI----------KN-ADRIIVLDNGRIVERGTHEEL  550 (567)
T ss_pred             CCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccHhHH----------Hh-CCEEEEEECCEEEEecCHHHH
Confidence            99999999998      2357777776663  57999999999888          44 999999999 99999998775


Q ss_pred             ee
Q 026304          182 TL  183 (240)
Q Consensus       182 ~~  183 (240)
                      ..
T Consensus       551 l~  552 (567)
T COG1132         551 LA  552 (567)
T ss_pred             HH
Confidence            43

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.91  E-value=8.8e-25  Score=207.07  Aligned_cols=155  Identities=16%  Similarity=0.087  Sum_probs=117.2

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|++++|       ++|+||++++|+.++|+|+||||||||+ ++|+|+        .++|.++..++...  .+.
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl-~lL~gl~~~~~G~I~i~g~~i~~~~~~~--~~~  406 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPDSGQILLDGHDLADYTLAS--LRR  406 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCeEEECCEeHHhcCHHH--HHh
Confidence            59999999998       8899999999999999999999999999 999997        23455544433222  223


Q ss_pred             CCeEEEccCceecceecCcchhHH-----------------------Hhh-------------------------chhhh
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-------------------------GDDAY  106 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-------------------------~~~l~  106 (240)
                      ..+|++|++.+|+. |+.+|..+.                       ..+                         .+.++
T Consensus       407 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall  485 (571)
T TIGR02203       407 QVALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALL  485 (571)
T ss_pred             hceEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence            45899999887765 343332211                       000                         11258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++++|||||+      .+.+++.|.++.  .++|+|++||+++..           ..||+|++|++ ++...|+.+
T Consensus       486 ~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~~~-----------~~~D~ii~l~~g~i~~~g~~~  552 (571)
T TIGR02203       486 KDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLSTI-----------EKADRIVVMDDGRIVERGTHN  552 (571)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhHHH-----------HhCCEEEEEeCCEEEeeCCHH
Confidence            9999999999988      346778887774  368999999999776           77999999998 888777766


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      ++
T Consensus       553 ~l  554 (571)
T TIGR02203       553 EL  554 (571)
T ss_pred             HH
Confidence            53

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=9.9e-25  Score=198.67  Aligned_cols=157  Identities=21%  Similarity=0.142  Sum_probs=122.0

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|+||+|       |+|+||++++||.++|+|++|||||||+ +++.|.        .++|.++..++++.. +. 
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTll-qLl~~~~~~~~G~i~~~g~~~~~l~~~~~-~e-  412 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLL-QLLAGAWDPQQGSITLNGVEIASLDEQAL-RE-  412 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHH-HHHHhccCCCCCeeeECCcChhhCChhhH-HH-
Confidence            68999999999       9999999999999999999999999999 999984        556777766654321 21 


Q ss_pred             CCeEEEccCceecceecCcchhHH-------------Hh-----------------h--------c---------hhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR-------------QK-----------------L--------G---------DDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~-------------~~-----------------~--------~---------~~l~~  107 (240)
                      ...++.|...+|.. |+.+|+.+.             ..                 +        |         +.+++
T Consensus       413 ~i~vl~Qr~hlF~~-Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~  491 (573)
T COG4987         413 TISVLTQRVHLFSG-TLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLH  491 (573)
T ss_pred             HHhhhccchHHHHH-HHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHc
Confidence            23678887766654 333332221             00                 0        1         12589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +.++++|||||.      -.++++++.+..+  |+|+|++||++..+           +.||||++|++ +++..|++++
T Consensus       492 dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~~l-----------e~~drIivl~~Gkiie~G~~~~  558 (573)
T COG4987         492 DAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLRGL-----------ERMDRIIVLDNGKIIEEGTHAE  558 (573)
T ss_pred             CCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccccH-----------hhcCEEEEEECCeeeecCCHHh
Confidence            999999999987      3478888888764  89999999999987           88999999999 9999999887


Q ss_pred             eee
Q 026304          181 FTL  183 (240)
Q Consensus       181 ~~~  183 (240)
                      +..
T Consensus       559 Ll~  561 (573)
T COG4987         559 LLA  561 (573)
T ss_pred             hhc
Confidence            654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.91  E-value=3.4e-24  Score=189.55  Aligned_cols=162  Identities=13%  Similarity=0.066  Sum_probs=128.1

Q ss_pred             CceEEEcceeEee----------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEe
Q 026304            8 PAAVTTNQVNSGR----------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAM   64 (240)
Q Consensus         8 ~~~l~~~~ls~~~----------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~   64 (240)
                      ++.++.+++.+.|                ++++||++.+||.++|+|.||||||||- +.|.++       .|.|+++..
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG-~allrL~~s~G~I~F~G~~i~~  352 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLG-LALLRLIPSQGEIRFDGQDIDG  352 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHH-HHHHhhcCcCceEEECCccccc
Confidence            4579999999987                6899999999999999999999999998 888876       567777776


Q ss_pred             eccchhcc-cCCCeEEEccCc--eecceecCcchhHHHh-----------------------------------------
Q 026304           65 IKSSKDTR-YAIDSVVTHDGA--KLPCWALPELTSFRQK-----------------------------------------  100 (240)
Q Consensus        65 ~~~~~~~~-~~~~~~v~q~~~--~~~~~~~~~~~~~~~~-----------------------------------------  100 (240)
                      ++...... ++...+|||++.  +-|.+++.+...-...                                         
T Consensus       353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR  432 (534)
T COG4172         353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR  432 (534)
T ss_pred             cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence            65443211 123479999864  5566666432211100                                         


Q ss_pred             ----hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          101 ----LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       101 ----~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                          ++..++.+|++++|||||+      +.+++++|+++.+++|.+-+++|||+..+          ..+||+|++|++
T Consensus       433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv----------rAl~~~viVm~~  502 (534)
T COG4172         433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV----------RALCHRVIVMRD  502 (534)
T ss_pred             hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH----------HHhhceEEEEeC
Confidence                0123688999999999999      45899999999988999999999999999          999999999999


Q ss_pred             -eeeccCCcce
Q 026304          171 -RCELCGKRAF  180 (240)
Q Consensus       171 -~~~~~g~~~~  180 (240)
                       +++..|+.+.
T Consensus       503 GkiVE~G~~~~  513 (534)
T COG4172         503 GKIVEQGPTEA  513 (534)
T ss_pred             CEEeeeCCHHH
Confidence             9999998764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.91  E-value=3e-24  Score=202.09  Aligned_cols=151  Identities=21%  Similarity=0.175  Sum_probs=107.7

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEcc
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      .+|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+... .    + ...+|++|+
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G~i~~~-~----~-~~i~~~~q~  390 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLL-RTLVGELEPDSGTVKWS-E----N-ANIGYYAQD  390 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEEC-C----c-eEEEEEccc
Confidence            489999999998     8999999999999999999999999999 99999732 22223211 1    1 124677776


Q ss_pred             Cc--eecceecCcchhHH--------------Hhh------------------------chhhhccCcEEEEcCccC---
Q 026304           83 GA--KLPCWALPELTSFR--------------QKL------------------------GDDAYAKLDVIGIDEAQF---  119 (240)
Q Consensus        83 ~~--~~~~~~~~~~~~~~--------------~~~------------------------~~~l~~~p~lllLDEP~~---  119 (240)
                      ..  +++.+++.++..+.              ..+                        +..++.+|++||||||++   
T Consensus       391 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD  470 (530)
T PRK15064        391 HAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD  470 (530)
T ss_pred             ccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence            42  23333443322110              000                        122588999999999988   


Q ss_pred             ---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCcce
Q 026304          120 ---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRAF  180 (240)
Q Consensus       120 ---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~~  180 (240)
                         ...+.+.|+++    +.|||++|||++++          ..+|||+++|++ ++. ++|++..
T Consensus       471 ~~~~~~l~~~l~~~----~~tvi~vsHd~~~~----------~~~~d~i~~l~~g~i~~~~g~~~~  522 (530)
T PRK15064        471 MESIESLNMALEKY----EGTLIFVSHDREFV----------SSLATRIIEITPDGVVDFSGTYEE  522 (530)
T ss_pred             HHHHHHHHHHHHHC----CCEEEEEeCCHHHH----------HHhCCEEEEEECCeEEEcCCCHHH
Confidence               23455555543    45999999999999          899999999998 765 6776643

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.91  E-value=2.6e-24  Score=180.50  Aligned_cols=145  Identities=16%  Similarity=0.120  Sum_probs=100.0

Q ss_pred             EEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccc--hhcccCC
Q 026304           12 TTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSS--KDTRYAI   75 (240)
Q Consensus        12 ~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~--~~~~~~~   75 (240)
                      .+.+++++|      ++++||++++|++++|+||||||||||+ ++|+|+.        ++|+++...+..  ...+...
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLL-LAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS   80 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence            456777777      8999999999999999999999999999 9999972        233333221110  0111123


Q ss_pred             CeEEEccCceecceecCcchhHH------------H------h----------------------------hchhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR------------Q------K----------------------------LGDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~------------~------~----------------------------~~~~l~~~p  109 (240)
                      .+|++|++.+++ .++.+++.+.            .      .                            ++..++.+|
T Consensus        81 i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p  159 (218)
T cd03290          81 VAYAAQKPWLLN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT  159 (218)
T ss_pred             EEEEcCCCcccc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence            478898876553 3443322210            0      0                            011258899


Q ss_pred             cEEEEcCccC------hHHHHH--HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          110 DVIGIDEAQF------FEDLYE--FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~--~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++||||||++      +..+++  +++.+.+ .|.|+|++||+++.+          . .||++++|++
T Consensus       160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~----------~-~~d~i~~l~~  216 (218)
T cd03290         160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYL----------P-HADWIIAMKD  216 (218)
T ss_pred             CEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHH----------h-hCCEEEEecC
Confidence            9999999988      345666  5555554 689999999999987          5 6999998864

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.91  E-value=1.3e-24  Score=210.42  Aligned_cols=155  Identities=16%  Similarity=0.146  Sum_probs=120.3

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++|++++|       ++++||++++|+.++|+|+||||||||+ ++|+|+        .++|.++..++.... | .
T Consensus       455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~-~ll~g~~~p~~G~I~idg~~i~~~~~~~~-r-~  531 (694)
T TIGR01846       455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRLYTPQHGQVLVDGVDLAIADPAWL-R-R  531 (694)
T ss_pred             eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEehhhCCHHHH-H-H
Confidence            59999999998       8999999999999999999999999999 999997        345666655543322 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~  107 (240)
                      ..+|++|++.+++. |+.+|..+..                      .+                         ++.+++
T Consensus       532 ~i~~v~q~~~lf~~-ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       532 QMGVVLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             hCeEEccCCeehhh-hHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            35899999887764 4443332210                      00                         122589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.|+++.  .++|+|++||+++.+           ..||+|++|++ ++..+|++++
T Consensus       611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-----------~~~d~ii~l~~G~i~~~g~~~~  677 (694)
T TIGR01846       611 NPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLSTV-----------RACDRIIVLEKGQIAESGRHEE  677 (694)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHHH-----------HhCCEEEEEeCCEEEEeCCHHH
Confidence            999999999988      346888888774  478999999999887           56999999999 9988888765


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       678 l  678 (694)
T TIGR01846       678 L  678 (694)
T ss_pred             H
Confidence            4

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.4e-24  Score=198.34  Aligned_cols=157  Identities=16%  Similarity=0.085  Sum_probs=122.0

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .++.+|+++.|      ++|+||++++|+.++|+|+||||||||+ ++|.|+        .++|.+....++.  ..++.
T Consensus       320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl-~lL~G~~~~~~G~I~vng~~l~~l~~~--~~~k~  396 (559)
T COG4988         320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLL-NLLLGFLAPTQGEIRVNGIDLRDLSPE--AWRKQ  396 (559)
T ss_pred             eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCccccccCHH--HHHhH
Confidence            34556999999      8999999999999999999999999999 999997        3566666555432  22334


Q ss_pred             CeEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p  109 (240)
                      ..+++|++.+++. |+.+|..+...                                              +.+.++.++
T Consensus       397 i~~v~Q~p~lf~g-TireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~  475 (559)
T COG4988         397 ISWVSQNPYLFAG-TIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPA  475 (559)
T ss_pred             eeeeCCCCccccc-cHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCC
Confidence            5899999988875 44444322110                                              012258899


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      +++++||||+      -..+.+.|.++++  ++|++++||++..+           .-||+|++|++ +++..|+++++.
T Consensus       476 ~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~~~-----------~~~D~I~vld~G~l~~~g~~~~L~  542 (559)
T COG4988         476 SLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLEDA-----------ADADRIVVLDNGRLVEQGTHEELS  542 (559)
T ss_pred             CEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChHHH-----------hcCCEEEEecCCceeccCCHHHHh
Confidence            9999999998      2358888889876  58999999999987           77999999999 999999887764


Q ss_pred             e
Q 026304          183 L  183 (240)
Q Consensus       183 ~  183 (240)
                      .
T Consensus       543 ~  543 (559)
T COG4988         543 E  543 (559)
T ss_pred             h
Confidence            3

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.91  E-value=1.5e-24  Score=205.87  Aligned_cols=156  Identities=18%  Similarity=0.121  Sum_probs=119.7

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      ..|+++|++++|       |+|+||++++|+.++|+||||||||||+ ++|+|+        .++|.++..++...  .+
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~p~~G~I~i~g~~i~~~~~~~--~r  413 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL-QLLTRAWDPQQGEILLNGQPIADYSEAA--LR  413 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEECCEEhhhCCHHH--HH
Confidence            369999999998       8999999999999999999999999999 999997        34555555443322  22


Q ss_pred             CCCeEEEccCceecceecCcchhHHH----------------------h------------------------hchhhhc
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K------------------------LGDDAYA  107 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~------------------------~~~~l~~  107 (240)
                      ...+|++|++.+|+. |+.+|..+..                      .                        +.+.+++
T Consensus       414 ~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~  492 (574)
T PRK11160        414 QAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH  492 (574)
T ss_pred             hheeEEcccchhhcc-cHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence            335899999887764 4444432210                      0                        0112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.|.++.  +++|+|++||+++.+           ..||+|++|++ ++...|+.++
T Consensus       493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~~-----------~~~d~i~~l~~G~i~~~g~~~~  559 (574)
T PRK11160        493 DAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTGL-----------EQFDRICVMDNGQIIEQGTHQE  559 (574)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhHH-----------HhCCEEEEEeCCeEEEeCCHHH
Confidence            999999999988      346777787775  478999999999887           56999999999 8888888765


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       560 l  560 (574)
T PRK11160        560 L  560 (574)
T ss_pred             H
Confidence            4

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.4e-24  Score=203.52  Aligned_cols=156  Identities=17%  Similarity=0.115  Sum_probs=125.6

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++||+|+|        ++|+||+|+|||+++|+||||+||||+. .+|.++        .++|.++..+++....  
T Consensus       465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTia-sLL~rfY~PtsG~IllDG~~i~~~~~~~lr--  541 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIA-SLLLRFYDPTSGRILLDGVPISDINHKYLR--  541 (716)
T ss_pred             eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCeehhhcCHHHHH--
Confidence            69999999999        9999999999999999999999999999 999886        4688888887765433  


Q ss_pred             CCCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~  106 (240)
                      +.+++|.|++.+|.. ++.+|..+..                      .                         +++.++
T Consensus       542 ~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  542 RKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             HHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            346999999999876 4555443310                      0                         022369


Q ss_pred             ccCcEEEEcCccCh-H-----HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQFF-E-----DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~~-~-----~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      ++|.+|||||.|+. +     .+.+.|.++.+  +.|||++.|.++-+           +.||+|+++++ ++..-|+.+
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLSTV-----------~~Ad~Ivvi~~G~V~E~G~h~  687 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLSTV-----------RHADQIVVIDKGRVVEMGTHD  687 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhhHh-----------hhccEEEEEcCCeEEecccHH
Confidence            99999999999992 1     46667767664  69999999999998           78999999999 998888766


Q ss_pred             eee
Q 026304          180 FFT  182 (240)
Q Consensus       180 ~~~  182 (240)
                      ++.
T Consensus       688 eLl  690 (716)
T KOG0058|consen  688 ELL  690 (716)
T ss_pred             HHh
Confidence            543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.91  E-value=3.7e-24  Score=177.80  Aligned_cols=138  Identities=17%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             EEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEE
Q 026304           11 VTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        11 l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      ++++||+++|          ++++||+|++|++++|+||||||||||+ ++|+|+. ...-.+....        ..+|+
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl-~~i~G~~~~~~G~i~~~g--------~i~~~   71 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLL-SALLGELEKLSGSVSVPG--------SIAYV   71 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCCeEEEcC--------EEEEE
Confidence            3577777765          6699999999999999999999999999 9999973 2222222110        13566


Q ss_pred             EccCceecceecCcchhH---------------------HH-------------------------hhchhhhccCcEEE
Q 026304           80 THDGAKLPCWALPELTSF---------------------RQ-------------------------KLGDDAYAKLDVIG  113 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~---------------------~~-------------------------~~~~~l~~~p~lll  113 (240)
                      +|++.+++ .++.++..+                     ..                         .+...++.+|++++
T Consensus        72 ~q~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~lll  150 (204)
T cd03250          72 SQEPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYL  150 (204)
T ss_pred             ecCchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            66654432 222221111                     00                         01223689999999


Q ss_pred             EcCccC------hHHHHH-HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          114 IDEAQF------FEDLYE-FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       114 LDEP~~------~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ||||++      .+.+.+ +++++.+ .|.|||++||+++.+          .. ||++++|++
T Consensus       151 lDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~~----------~~-~d~i~~l~~  202 (204)
T cd03250         151 LDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQLL----------PH-ADQIVVLDN  202 (204)
T ss_pred             EeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHHH----------hh-CCEEEEEeC
Confidence            999988      235666 3455555 589999999999998          66 999999875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.91  E-value=1.7e-24  Score=170.76  Aligned_cols=163  Identities=20%  Similarity=0.149  Sum_probs=126.7

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCce--EEeeccc---hhc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRN--IAMIKSS---KDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~--i~~~~~~---~~~   71 (240)
                      .|.++++++.|     |-||+|+.++||.+.++||+|||||||+ |.++-+.        +.|..  ....+..   ...
T Consensus         2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssll-r~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161           2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLL-RVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHH-HHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            47899999999     8999999999999999999999999999 9886542        11211  1111111   112


Q ss_pred             ccCCCeEEEccCceecceecCcchhHH--------------------Hhh-----------------------chhhhcc
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELTSFR--------------------QKL-----------------------GDDAYAK  108 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------~~~-----------------------~~~l~~~  108 (240)
                      |. ..|+|||...++|.+++.+|+--.                    .++                       ++.++++
T Consensus        81 r~-~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmk  159 (242)
T COG4161          81 RR-NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMME  159 (242)
T ss_pred             HH-hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcC
Confidence            22 248999999999999887654210                    000                       1236999


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|++||||+      ..++.++++++.. .|+|-+++||..+.+          ...|.+++.|.+ +++..|+.+.|
T Consensus       160 pqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev~va----------~k~as~vvyme~g~ive~g~a~~f  228 (242)
T COG4161         160 PQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEVEVA----------RKTASRVVYMENGHIVEQGDASCF  228 (242)
T ss_pred             CcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeehhHH----------HhhhhheEeeecCeeEeecchhhc
Confidence            99999999988      2479999999997 799999999999999          999999999999 99999988877


Q ss_pred             eeee
Q 026304          182 TLRK  185 (240)
Q Consensus       182 ~~~~  185 (240)
                      +...
T Consensus       229 t~p~  232 (242)
T COG4161         229 TEPQ  232 (242)
T ss_pred             cCcc
Confidence            6544

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.91  E-value=6.3e-24  Score=200.82  Aligned_cols=149  Identities=21%  Similarity=0.067  Sum_probs=109.5

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .|++++|++++|      ++|+||+|++|++++|+||||||||||| ++|+|+.  ..|. +.. ..    + ...+|++
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl-~~i~G~~~p~~G~-i~~-~~----~-~~i~~v~   74 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLL-RIMAGVDKEFNGE-ARP-AP----G-IKVGYLP   74 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEe-cC----C-CEEEEEe
Confidence            489999999988      7999999999999999999999999999 9999973  2343 221 11    1 1247888


Q ss_pred             ccCceecceecCcchhHH------------------------------------------------Hh------------
Q 026304           81 HDGAKLPCWALPELTSFR------------------------------------------------QK------------  100 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~~------------------------------------------------~~------------  100 (240)
                      |++.+++.+++.+++.+.                                                .+            
T Consensus        75 Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~  154 (552)
T TIGR03719        75 QEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP  154 (552)
T ss_pred             ccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence            887666655554443210                                                00            


Q ss_pred             -----------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304          101 -----------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD  157 (240)
Q Consensus       101 -----------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~  157 (240)
                                       ++..++.+|++|||||||+      ...+.++|+++    +.|||++|||++++         
T Consensus       155 ~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~tvIiisHd~~~~---------  221 (552)
T TIGR03719       155 WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTHDRYFL---------  221 (552)
T ss_pred             ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CCeEEEEeCCHHHH---------
Confidence                             0112588999999999988      23455555443    45999999999999         


Q ss_pred             HHhhccceeeecc-eee-ccCCcc
Q 026304          158 IIPLADTVTKLTA-RCE-LCGKRA  179 (240)
Q Consensus       158 L~~~ad~i~~l~~-~~~-~~g~~~  179 (240)
                       ..+||++++|++ ++. +.|+..
T Consensus       222 -~~~~d~v~~l~~g~i~~~~g~~~  244 (552)
T TIGR03719       222 -DNVAGWILELDRGRGIPWEGNYS  244 (552)
T ss_pred             -HhhcCeEEEEECCEEEEecCCHH
Confidence             899999999998 654 556654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.91  E-value=4.5e-24  Score=176.28  Aligned_cols=136  Identities=15%  Similarity=0.056  Sum_probs=94.6

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccch-hcccCCCeEEEcc
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSK-DTRYAIDSVVTHD   82 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~-~~~~~~~~~v~q~   82 (240)
                      ||+++|++++|    +.++||++++|++++|+||||||||||+ ++|+|+.  ..|. +....... .......+|++|.
T Consensus         1 ~l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~-i~~~g~~i~~~~~~~~~~~~~~   78 (195)
T PRK13541          1 MLSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLL-RMIAGIMQPSSGN-IYYKNCNINNIAKPYCTYIGHN   78 (195)
T ss_pred             CeEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCCcE-EEECCcccChhhhhhEEeccCC
Confidence            58899999998    4459999999999999999999999999 9999972  1222 22111000 0001123677776


Q ss_pred             CceecceecCcchhHHHh--------------h-----------------------chhhhccCcEEEEcCccC------
Q 026304           83 GAKLPCWALPELTSFRQK--------------L-----------------------GDDAYAKLDVIGIDEAQF------  119 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~--------------~-----------------------~~~l~~~p~lllLDEP~~------  119 (240)
                      ..++...++.++..+...              +                       ...++.+|++++||||++      
T Consensus        79 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~  158 (195)
T PRK13541         79 LGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN  158 (195)
T ss_pred             cCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence            555555555544432110              0                       112588999999999987      


Q ss_pred             hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          120 FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       120 ~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ...+.+++++..+ .+.|||++||+++.+
T Consensus       159 ~~~l~~~l~~~~~-~~~tiii~sh~~~~i  186 (195)
T PRK13541        159 RDLLNNLIVMKAN-SGGIVLLSSHLESSI  186 (195)
T ss_pred             HHHHHHHHHHHHh-CCCEEEEEeCCcccc
Confidence            3467788876655 689999999999887

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.91  E-value=2e-24  Score=204.88  Aligned_cols=155  Identities=13%  Similarity=0.101  Sum_probs=116.7

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|++++|       ++++||++++|+.++|+||||||||||+ ++|.|+.        ++|+++...+..  ..+.
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl-~ll~g~~~p~~G~i~~~g~~~~~~~~~--~~~~  389 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVSEGDIRFHDIPLTKLQLD--SWRS  389 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHH-HHHhcccCCCCCEEEECCEEHhhCCHH--HHHh
Confidence            58999999988       8999999999999999999999999999 9999972        344444333221  1122


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~  107 (240)
                      ..+|++|++.+++. |+.+|..+..                      .                         ++..+++
T Consensus       390 ~i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~  468 (569)
T PRK10789        390 RLAVVSQTPFLFSD-TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLL  468 (569)
T ss_pred             heEEEccCCeeccc-cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence            35899999887764 4444332210                      0                         0122589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.|+++.  .++|+|++||+++.+           ..||+|++|++ ++...|+.++
T Consensus       469 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~  535 (569)
T PRK10789        469 NAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLSAL-----------TEASEILVMQHGHIAQRGNHDQ  535 (569)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchhHH-----------HcCCEEEEEeCCEEEEecCHHH
Confidence            999999999988      346778887764  489999999999876           56999999998 8888887654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       536 l  536 (569)
T PRK10789        536 L  536 (569)
T ss_pred             H
Confidence            3

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.90  E-value=2.6e-24  Score=204.65  Aligned_cols=155  Identities=17%  Similarity=0.077  Sum_probs=116.4

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      .++++|++++|      ++|+||++++|+.++|+||||||||||+ ++|.|+.        ++|.++...+...  ....
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~~--~~~~  410 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLI-NLLQRVYDPTVGQILIDGIDINTVTRES--LRKS  410 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHccCCCCCCCEEEECCEEhhhCCHHH--HHhh
Confidence            59999999998      8999999999999999999999999999 9999972        3444443332221  1223


Q ss_pred             CeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~~~  108 (240)
                      .+|++|++.+++. |+.+|..+.                      ..+                         +..++.+
T Consensus       411 i~~v~q~~~lf~~-ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~  489 (585)
T TIGR01192       411 IATVFQDAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKN  489 (585)
T ss_pred             eEEEccCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            5899999877653 444333221                      000                         1125899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+      ...+.+.|.++.  .++|+|++||+++.+           ..||+|++|++ ++...|+.+++
T Consensus       490 p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~l  556 (585)
T TIGR01192       490 APILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLSTV-----------RNADLVLFLDQGRLIEKGSFQEL  556 (585)
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHHH-----------HcCCEEEEEECCEEEEECCHHHH
Confidence            99999999988      346778887764  479999999999887           56999999999 88877776544

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.90  E-value=4.6e-24  Score=199.00  Aligned_cols=154  Identities=12%  Similarity=0.004  Sum_probs=107.4

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeecc------chhccc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKS------SKDTRY   73 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~------~~~~~~   73 (240)
                      .++|+++|+++.|     ++++||++++||+++|+||||||||||+ ++|+|+..   .|. +.....      ......
T Consensus       258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl-~~l~G~~~~~~~G~-i~~~g~~~~~~~~~~~~~  335 (490)
T PRK10938        258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLL-SLITGDHPQGYSND-LTLFGRRRGSGETIWDIK  335 (490)
T ss_pred             CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCcccCCe-EEEecccCCCCCCHHHHH
Confidence            4589999999998     8999999999999999999999999999 99999732   332 221110      000111


Q ss_pred             CCCeEEEccCceecc--eecCcch-----------------------hHHHhh------------------------chh
Q 026304           74 AIDSVVTHDGAKLPC--WALPELT-----------------------SFRQKL------------------------GDD  104 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~--~~~~~~~-----------------------~~~~~~------------------------~~~  104 (240)
                      ...+|++|+..++..  .++.++.                       .+...+                        +..
T Consensus       336 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  415 (490)
T PRK10938        336 KHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRA  415 (490)
T ss_pred             hhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHH
Confidence            234788876432111  1111100                       000000                        122


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHh-hccceeeecc-eee
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIP-LADTVTKLTA-RCE  173 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~-~ad~i~~l~~-~~~  173 (240)
                      ++.+|++||||||++      +..+.++|++++++.+.|||++|||++++          .. +||++++|++ +++
T Consensus       416 l~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~----------~~~~~d~v~~l~~G~i~  482 (490)
T PRK10938        416 LVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA----------PACITHRLEFVPDGDIY  482 (490)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh----------hhhhheeEEEecCCceE
Confidence            589999999999988      45799999999873345799999999999          77 5999999987 654

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=2.9e-24  Score=176.21  Aligned_cols=153  Identities=14%  Similarity=0.148  Sum_probs=123.3

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~   71 (240)
                      |+++.|+++.|          |+++|++|++|+++.|+|.||||||||+ +.|+|.        .++|.++..++...+.
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTll-n~iaG~l~~t~G~I~Idg~dVtk~~~~~RA   79 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLL-NAIAGDLKPTSGQILIDGVDVTKKSVAKRA   79 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHH-HHhhCccccCCceEEECceecccCCHHHHh
Confidence            56778888876          8999999999999999999999999999 999996        4678888777654433


Q ss_pred             ccCCCeEEEccCc--eecceecCcchhHHHhh-----------------------------------------chh----
Q 026304           72 RYAIDSVVTHDGA--KLPCWALPELTSFRQKL-----------------------------------------GDD----  104 (240)
Q Consensus        72 ~~~~~~~v~q~~~--~~~~~~~~~~~~~~~~~-----------------------------------------~~~----  104 (240)
                      .  ...-|||++.  ..+.+|++||..+...-                                         +|+    
T Consensus        80 ~--~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQal  157 (263)
T COG1101          80 N--LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQAL  157 (263)
T ss_pred             h--HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHH
Confidence            2  2356788864  56788888887664321                                         111    


Q ss_pred             -----hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          105 -----AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       105 -----l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                           .++.|++|+|||-|+      ...++++-.++.++.+.|.+||||.++.+          ..|.+|.++|++ ++
T Consensus       158 sL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~A----------l~yG~RlImLh~G~I  227 (263)
T COG1101         158 SLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA----------LDYGNRLIMLHSGKI  227 (263)
T ss_pred             HHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHH----------HhhCCeEEEEeCCeE
Confidence                 278999999999988      34788888898887899999999999999          999999999999 77


Q ss_pred             ecc
Q 026304          173 ELC  175 (240)
Q Consensus       173 ~~~  175 (240)
                      +.+
T Consensus       228 vlD  230 (263)
T COG1101         228 VLD  230 (263)
T ss_pred             EEE
Confidence            644

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.90  E-value=4e-24  Score=175.72  Aligned_cols=125  Identities=19%  Similarity=0.177  Sum_probs=87.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCc--eeccee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGA--KLPCWA   90 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~--~~~~~~   90 (240)
                      ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++..............+|++|++.  ++. .+
T Consensus         8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~t   85 (190)
T TIGR01166         8 LKGLNFAAERGEVLALLGANGAGKSTLL-LHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA-AD   85 (190)
T ss_pred             ecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc-cc
Confidence            7999999999999999999999999999 9999972        3444432111111111123489999862  332 35


Q ss_pred             cCcchhHHH------------h-------h-----------------------chhhhccCcEEEEcCccC------hHH
Q 026304           91 LPELTSFRQ------------K-------L-----------------------GDDAYAKLDVIGIDEAQF------FED  122 (240)
Q Consensus        91 ~~~~~~~~~------------~-------~-----------------------~~~l~~~p~lllLDEP~~------~~~  122 (240)
                      +.++..+..            .       +                       ...++.+|++|+||||++      +..
T Consensus        86 v~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~  165 (190)
T TIGR01166        86 VDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQ  165 (190)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence            544443210            0       0                       112588999999999988      457


Q ss_pred             HHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          123 LYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       123 i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      +.++|+++++ +|.|||++|||++++
T Consensus       166 ~~~~l~~~~~-~~~tili~sH~~~~~  190 (190)
T TIGR01166       166 MLAILRRLRA-EGMTVVISTHDVDLA  190 (190)
T ss_pred             HHHHHHHHHH-cCCEEEEEeeccccC
Confidence            8899999876 689999999998753

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.90  E-value=2.5e-24  Score=204.28  Aligned_cols=154  Identities=18%  Similarity=0.135  Sum_probs=115.5

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++|++++|        ++|+||++++||.++|+||||||||||+ ++|+|+.        ++|.++..+.+..  ..
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLl-klL~gl~~p~~G~I~i~g~~i~~~~~~~--~~  413 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLF-QLLLRFYDPQSGRILLDGVDLRQLDPAE--LR  413 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHH-HHHHhccCCCCCEEEECCEEHHhcCHHH--HH
Confidence            59999999987        7899999999999999999999999999 9999972        3444443332222  12


Q ss_pred             CCCeEEEccCceecceecCcchhHH----------------------Hhh-------------------------chhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR----------------------QKL-------------------------GDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~~-------------------------~~~l~  106 (240)
                      +..+|++|++.+++. |+.+|..+.                      ..+                         ++.++
T Consensus       414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~  492 (576)
T TIGR02204       414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL  492 (576)
T ss_pred             HhceEEccCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence            235899999887764 333332210                      000                         11258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|+|||||+      .+.+++.++++.  .++|+|++||+++..           ..||++++|++ ++...|+++
T Consensus       493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~~~-----------~~~d~vi~l~~g~~~~~g~~~  559 (576)
T TIGR02204       493 KDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLATV-----------LKADRIVVMDQGRIVAQGTHA  559 (576)
T ss_pred             hCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchHHH-----------HhCCEEEEEECCEEEeeecHH
Confidence            8999999999988      345777887774  479999999999776           67999999999 888777765


Q ss_pred             e
Q 026304          180 F  180 (240)
Q Consensus       180 ~  180 (240)
                      .
T Consensus       560 ~  560 (576)
T TIGR02204       560 E  560 (576)
T ss_pred             H
Confidence            4

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.90  E-value=7.9e-24  Score=181.94  Aligned_cols=148  Identities=18%  Similarity=0.092  Sum_probs=99.5

Q ss_pred             cceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCc-----------------eEEeeccc
Q 026304           14 NQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGR-----------------NIAMIKSS   68 (240)
Q Consensus        14 ~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~-----------------~i~~~~~~   68 (240)
                      .|++++|      ++++|+ +.+|++++|+||||||||||+ ++|+|+.  ..|+                 ++..... 
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLl-k~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~-   80 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTAL-KILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT-   80 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHH-HHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH-
Confidence            4677777      789994 999999999999999999999 9999973  1232                 2111100 


Q ss_pred             hhcccC-CCeEEEccCceecceecCcchh--------------HHHh-----------------------hchhhhccCc
Q 026304           69 KDTRYA-IDSVVTHDGAKLPCWALPELTS--------------FRQK-----------------------LGDDAYAKLD  110 (240)
Q Consensus        69 ~~~~~~-~~~~v~q~~~~~~~~~~~~~~~--------------~~~~-----------------------~~~~l~~~p~  110 (240)
                      ...+.. ..++++|....++. ++.++..              +...                       ++..++.+|+
T Consensus        81 ~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  159 (255)
T cd03236          81 KLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDAD  159 (255)
T ss_pred             HhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            000101 12455665444332 1111100              0000                       0122588999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccC
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCG  176 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g  176 (240)
                      ++++|||++      +..+.++++++++ .+.|||++|||++++          ..+||++++|++++.+.|
T Consensus       160 illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~~~----------~~~ad~i~~l~~~~~~~~  220 (255)
T cd03236         160 FYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLAVL----------DYLSDYIHCLYGEPGAYG  220 (255)
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHH----------HHhCCEEEEECCCCCcce
Confidence            999999988      3468899999876 589999999999999          889999999987655433

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=3.8e-24  Score=210.51  Aligned_cols=157  Identities=15%  Similarity=0.130  Sum_probs=124.4

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .++++||+|+|        |+++||.|++|+.++|+|||||||||++ ++|.++        .++|.++..+.....+  
T Consensus       350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i-~LL~RfydP~~G~V~idG~di~~~~~~~lr--  426 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLI-QLLARFYDPTSGEVLIDGEDIRNLNLKWLR--  426 (1228)
T ss_pred             ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCceEEEcCccchhcchHHHH--
Confidence            69999999999        8999999999999999999999999999 999997        4678887766544332  


Q ss_pred             CCCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~  106 (240)
                      ..+|+|+|++.+|.. |+.+|..+..                      .                         +++.++
T Consensus       427 ~~iglV~QePvlF~~-tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv  505 (1228)
T KOG0055|consen  427 SQIGLVSQEPVLFAT-TIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV  505 (1228)
T ss_pred             hhcCeeeechhhhcc-cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence            246999999977754 5554443311                      0                         012369


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|||||||+      ...+.+.|.+..  .|+|-|+++|+++.+           +.||+|++|++ +++..|+++
T Consensus       506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLStI-----------rnaD~I~v~~~G~IvE~G~h~  572 (1228)
T KOG0055|consen  506 RNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLSTI-----------RNADKIAVMEEGKIVEQGTHD  572 (1228)
T ss_pred             hCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhhh-----------hccCEEEEEECCEEEEecCHH
Confidence            9999999999999      224666666654  488999999999998           44999999999 999999988


Q ss_pred             eeee
Q 026304          180 FFTL  183 (240)
Q Consensus       180 ~~~~  183 (240)
                      ++..
T Consensus       573 ELi~  576 (1228)
T KOG0055|consen  573 ELIA  576 (1228)
T ss_pred             HHHh
Confidence            7543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.90  E-value=1.6e-23  Score=182.38  Aligned_cols=150  Identities=21%  Similarity=0.198  Sum_probs=105.0

Q ss_pred             CceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304            8 PAAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus         8 ~~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      .+.|+++|+++..   ++++||+|++|++++|+||||||||||+ ++|+|+.  ..|. +... .       ..+|++|+
T Consensus        37 ~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl-~~I~Gl~~p~~G~-I~i~-g-------~i~yv~q~  106 (282)
T cd03291          37 DNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLL-MLILGELEPSEGK-IKHS-G-------RISFSSQF  106 (282)
T ss_pred             CCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcE-EEEC-C-------EEEEEeCc
Confidence            4579999999864   9999999999999999999999999999 9999973  2332 2211 0       12455555


Q ss_pred             CceecceecCcchhH----------------------------------------------HHhhchhhhccCcEEEEcC
Q 026304           83 GAKLPCWALPELTSF----------------------------------------------RQKLGDDAYAKLDVIGIDE  116 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~----------------------------------------------~~~~~~~l~~~p~lllLDE  116 (240)
                      ..+++. ++.++..+                                              ...++..++.+|++|||||
T Consensus       107 ~~l~~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDE  185 (282)
T cd03291         107 SWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS  185 (282)
T ss_pred             cccccc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence            443321 22111100                                              0001223688999999999


Q ss_pred             ccC------hHHHHHHH-HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          117 AQF------FEDLYEFC-CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       117 P~~------~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++      ...+++.+ .++.  .+.|||++|||++++           ..||++++|++ ++...|+++.+
T Consensus       186 Pt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~-----------~~~d~i~~l~~G~i~~~g~~~~~  245 (282)
T cd03291         186 PFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEHL-----------KKADKILILHEGSSYFYGTFSEL  245 (282)
T ss_pred             CCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence            987      23455544 4443  478999999999987           47999999999 88888876654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=3.3e-23  Score=168.59  Aligned_cols=141  Identities=18%  Similarity=0.078  Sum_probs=92.7

Q ss_pred             EcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceec-
Q 026304           13 TNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWAL-   91 (240)
Q Consensus        13 ~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~-   91 (240)
                      +-+.+...++|+||++++|++++|+||||||||||| +++.+  ..|... ........+.....|++|... ...+.+ 
T Consensus         3 ~~~~~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl-~~il~--~~G~v~-~~~~~~~~~~~~~~~~~q~~~-l~~~~L~   77 (176)
T cd03238           3 VSGANVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLV-NEGLY--ASGKAR-LISFLPKFSRNKLIFIDQLQF-LIDVGLG   77 (176)
T ss_pred             ecceeeeeecceEEEEcCCCEEEEECCCCCCHHHHH-HHHhh--cCCcEE-ECCcccccccccEEEEhHHHH-HHHcCCC
Confidence            344555559999999999999999999999999999 98853  223221 111100000111245555111 000110 


Q ss_pred             -----------CcchhHHHhhchhhhcc--CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc
Q 026304           92 -----------PELTSFRQKLGDDAYAK--LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF  152 (240)
Q Consensus        92 -----------~~~~~~~~~~~~~l~~~--p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f  152 (240)
                                 .........+...++.+  |+++|||||++      ...+.+.++++.+ .|.|||++||+++++    
T Consensus        78 ~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~----  152 (176)
T cd03238          78 YLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVL----  152 (176)
T ss_pred             ccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----
Confidence                       01111122234557889  99999999988      3568888888876 699999999999887    


Q ss_pred             chHHHHHhhccceeeecc
Q 026304          153 GSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       153 ~~~~~L~~~ad~i~~l~~  170 (240)
                             ..||++++|.+
T Consensus       153 -------~~~d~i~~l~~  163 (176)
T cd03238         153 -------SSADWIIDFGP  163 (176)
T ss_pred             -------HhCCEEEEECC
Confidence                   47999999976

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=1.3e-23  Score=167.63  Aligned_cols=162  Identities=16%  Similarity=0.097  Sum_probs=115.7

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CC---------ceE--Eeeccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NG---------RNI--AMIKSS   68 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g---------~~i--~~~~~~   68 (240)
                      ..|.+++.++|+.|     .++|||++.+||+.+|+|.+|||||||| ++|++-. . .|         +..  ..++..
T Consensus         3 ~~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL-~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEa   81 (258)
T COG4107           3 DKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLL-KCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA   81 (258)
T ss_pred             CCcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHH-HHHhcccCCCCCeEEEEcCCCCchhHhhhchH
Confidence            34689999999999     8899999999999999999999999999 9998841 1 11         111  111111


Q ss_pred             hhcc--cCCCeEEEccCceecceecC--cchh-------------H-------------------------------HHh
Q 026304           69 KDTR--YAIDSVVTHDGAKLPCWALP--ELTS-------------F-------------------------------RQK  100 (240)
Q Consensus        69 ~~~~--~~~~~~v~q~~~~~~~~~~~--~~~~-------------~-------------------------------~~~  100 (240)
                      .+.+  ....|+|.|++.---.+.+.  .|..             +                               ...
T Consensus        82 eRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQ  161 (258)
T COG4107          82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQ  161 (258)
T ss_pred             HHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHH
Confidence            1111  11237888865321112221  1110             0                               001


Q ss_pred             hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          101 LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      ++..++..|+++++||||.      +..++++++.+..+.+..++++|||+..+          .-++||..+|++ +++
T Consensus       162 iARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~Va----------rLla~rlmvmk~g~vv  231 (258)
T COG4107         162 IARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVA----------RLLADRLMVMKQGQVV  231 (258)
T ss_pred             HHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHH----------HHhhhcceeecCCCEe
Confidence            1223689999999999987      56899999999887899999999999999          889999999999 888


Q ss_pred             ccCCcc
Q 026304          174 LCGKRA  179 (240)
Q Consensus       174 ~~g~~~  179 (240)
                      ..|-.+
T Consensus       232 e~GLTD  237 (258)
T COG4107         232 ESGLTD  237 (258)
T ss_pred             cccccc
Confidence            777543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.90  E-value=1.8e-23  Score=200.63  Aligned_cols=152  Identities=16%  Similarity=0.107  Sum_probs=106.8

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .++|+++|+++.|     ++++||+|.+|++++|+||||||||||| ++|+|+.  ..|. +.... .    . ..+|++
T Consensus       310 ~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G~-i~~~~-~----~-~igy~~  381 (638)
T PRK10636        310 NPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLI-KLLAGELAPVSGE-IGLAK-G----I-KLGYFA  381 (638)
T ss_pred             CceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCe-EEECC-C----E-EEEEec
Confidence            4589999999998     8999999999999999999999999999 9999973  2332 22111 0    0 135666


Q ss_pred             ccC--ceecceecCcch-------------hHHHh------------------------hchhhhccCcEEEEcCccC--
Q 026304           81 HDG--AKLPCWALPELT-------------SFRQK------------------------LGDDAYAKLDVIGIDEAQF--  119 (240)
Q Consensus        81 q~~--~~~~~~~~~~~~-------------~~~~~------------------------~~~~l~~~p~lllLDEP~~--  119 (240)
                      |..  .+.+..++.+..             .+...                        +...++.+|++|||||||+  
T Consensus       382 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~L  461 (638)
T PRK10636        382 QHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL  461 (638)
T ss_pred             CcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence            642  111211211110             00000                        0122588999999999998  


Q ss_pred             ----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCccee
Q 026304          120 ----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRAFF  181 (240)
Q Consensus       120 ----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~~~  181 (240)
                          ...+.+.|.++    +.|||+||||++++          ..+||++++|++ ++. +.|+...+
T Consensus       462 D~~~~~~l~~~L~~~----~gtvi~vSHd~~~~----------~~~~d~i~~l~~G~i~~~~g~~~~~  515 (638)
T PRK10636        462 DLDMRQALTEALIDF----EGALVVVSHDRHLL----------RSTTDDLYLVHDGKVEPFDGDLEDY  515 (638)
T ss_pred             CHHHHHHHHHHHHHc----CCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEEcCCCHHHH
Confidence                34566666554    34999999999999          999999999998 775 67776654

>PLN03130 ABC transporter C family member; Provisional

Probab=99.90  E-value=6.2e-24  Score=220.04  Aligned_cols=156  Identities=13%  Similarity=0.010  Sum_probs=124.5

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++||+++|       |+|+||+|++||.+||+|++|||||||+ ++|.|+        .++|.++..++.... |. 
T Consensus      1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl-~lL~rl~~p~~G~I~IDG~dI~~i~l~~L-R~- 1313 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSML-NALFRIVELERGRILIDGCDISKFGLMDL-RK- 1313 (1622)
T ss_pred             cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCcCCCCCceEEECCEecccCCHHHH-Hh-
Confidence            59999999999       8999999999999999999999999999 999997        467888776654432 32 


Q ss_pred             CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~  108 (240)
                      ..++++|++.+|.. |+.+|+....                     .                         +++.++++
T Consensus      1314 ~IsiVpQdp~LF~G-TIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130       1314 VLGIIPQAPVLFSG-TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred             ccEEECCCCccccc-cHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence            35899999988875 5554443210                     0                         01226899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+      ...+.+.|++..  .++|+|+++|+++.+           ..||||++|++ +++..|+|+++
T Consensus      1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~tI-----------~~~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130       1393 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTI-----------IDCDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHHH-----------HhCCEEEEEECCEEEEeCCHHHH
Confidence            99999999998      125667777664  479999999999988           45999999999 99999999875


Q ss_pred             e
Q 026304          182 T  182 (240)
Q Consensus       182 ~  182 (240)
                      .
T Consensus      1460 l 1460 (1622)
T PLN03130       1460 L 1460 (1622)
T ss_pred             H
Confidence            4

>PLN03232 ABC transporter C family member; Provisional

Probab=99.90  E-value=6e-24  Score=219.47  Aligned_cols=156  Identities=12%  Similarity=0.009  Sum_probs=122.7

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++||+++|       |+|+||+|++||.+||+||+|||||||+ ++|.|+        .++|.++..++.... | +
T Consensus      1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~-~lL~rl~~p~~G~I~IdG~di~~i~~~~l-R-~ 1310 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML-NALFRIVELEKGRIMIDDCDVAKFGLTDL-R-R 1310 (1495)
T ss_pred             cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCceEEECCEEhhhCCHHHH-H-h
Confidence            59999999999       8999999999999999999999999999 999997        457777766554322 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~  108 (240)
                      ..++++|++.+|+. |+.+|+....                     .                         +++.++++
T Consensus      1311 ~i~iVpQdp~LF~g-TIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232       1311 VLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred             hcEEECCCCeeeCc-cHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence            35899999988875 5554432210                     0                         01226899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+      ...+.+.|++..  .++|+|+++|+++.+           ..||||++|++ +++..|+++++
T Consensus      1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~ti-----------~~~DrIlVL~~G~ivE~Gt~~eL 1456 (1495)
T PLN03232       1390 SKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNTI-----------IDCDKILVLSSGQVLEYDSPQEL 1456 (1495)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence            99999999998      124666676654  479999999999888           45999999999 99999998875


Q ss_pred             e
Q 026304          182 T  182 (240)
Q Consensus       182 ~  182 (240)
                      .
T Consensus      1457 l 1457 (1495)
T PLN03232       1457 L 1457 (1495)
T ss_pred             H
Confidence            4

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.90  E-value=2.5e-23  Score=184.12  Aligned_cols=163  Identities=12%  Similarity=0.073  Sum_probs=125.1

Q ss_pred             CCceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------------hhCCceEEe
Q 026304            7 KPAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------------SDNGRNIAM   64 (240)
Q Consensus         7 ~~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------------~~~g~~i~~   64 (240)
                      ..+.|+++|+|+.|         +++|||++.+||.++|+|.||||||-.. +.++++             .++|.++..
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa-~sim~LLp~~~~~~~sg~i~f~G~dll~   81 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTA-LSILGLLPSPAAAHPSGSILFDGEDLLA   81 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHH-HHHHHhcCCCcccCccceeEEcChhhhc
Confidence            34689999999998         8999999999999999999999999998 888776             356777766


Q ss_pred             eccchhc--ccCCCeEEEccCc--eecceecCcc----hh----------------HHHh----------------h-ch
Q 026304           65 IKSSKDT--RYAIDSVVTHDGA--KLPCWALPEL----TS----------------FRQK----------------L-GD  103 (240)
Q Consensus        65 ~~~~~~~--~~~~~~~v~q~~~--~~~~~~~~~~----~~----------------~~~~----------------~-~~  103 (240)
                      .+.....  |-..++++||++.  +-|-.++...    +.                +...                + +|
T Consensus        82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGG  161 (534)
T COG4172          82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGG  161 (534)
T ss_pred             CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcc
Confidence            6544322  2234589999864  2222222210    00                0000                0 11


Q ss_pred             ---------hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          104 ---------DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       104 ---------~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                               .++.+|++||.||||.      +.+++++|+++.++.|..++++|||+..+          ..+||||++|
T Consensus       162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iV----------r~~ADrV~VM  231 (534)
T COG4172         162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIV----------RKFADRVYVM  231 (534)
T ss_pred             hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHH----------HHhhhhEEEE
Confidence                     2589999999999977      56899999999988999999999999999          9999999999


Q ss_pred             cc-eeeccCCcce
Q 026304          169 TA-RCELCGKRAF  180 (240)
Q Consensus       169 ~~-~~~~~g~~~~  180 (240)
                      .. +|+..|..+.
T Consensus       232 ~~G~ivE~~~t~~  244 (534)
T COG4172         232 QHGEIVETGTTET  244 (534)
T ss_pred             eccEEeecCcHHH
Confidence            99 9998887654

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.90  E-value=7.9e-24  Score=199.05  Aligned_cols=142  Identities=19%  Similarity=0.115  Sum_probs=108.4

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++|++++|       ++|+||++++|+.++|+||||||||||+ ++|.|+        .++|.++..++... .| +
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~-~ll~g~~~~~~G~I~~~g~~i~~~~~~~-lr-~  396 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLL-NLLLGFVDPTEGSIAVNGVPLADADADS-WR-D  396 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEehhhCCHHH-HH-h
Confidence            69999999998       8999999999999999999999999999 999997        24555555443322 12 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~  107 (240)
                      ..+|++|++.+|+. |+.+|..+..                      .+                         ++.+++
T Consensus       397 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~  475 (529)
T TIGR02857       397 QIAWVPQHPFLFAG-TIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR  475 (529)
T ss_pred             heEEEcCCCcccCc-CHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence            35899999888764 5554433210                      00                         112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      +|++++|||||+      ...+.+.+.++.  .++|+|++||+++.+           ..||+|++|
T Consensus       476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-----------~~~d~i~~l  529 (529)
T TIGR02857       476 DAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLALA-----------ERADRIVVL  529 (529)
T ss_pred             CCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHHHH-----------HhCCEEEeC
Confidence            999999999988      236777777764  479999999999877           679999875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.90  E-value=2.3e-23  Score=197.08  Aligned_cols=141  Identities=20%  Similarity=0.134  Sum_probs=103.5

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .++|+++|+++.|     ++++||+|.+|++++|+||||||||||+ ++|+|+.  ..| .+.. ...    . ..+|++
T Consensus       322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~i~G~~~p~~G-~i~~-~~~----~-~i~~v~  393 (556)
T PRK11819        322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLF-KMITGQEQPDSG-TIKI-GET----V-KLAYVD  393 (556)
T ss_pred             CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCe-EEEE-CCc----e-EEEEEe
Confidence            3589999999998     8999999999999999999999999999 9999973  233 2322 111    1 247888


Q ss_pred             ccC-ceecceecCcchhHH-----------------Hhh------------------------chhhhccCcEEEEcCcc
Q 026304           81 HDG-AKLPCWALPELTSFR-----------------QKL------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        81 q~~-~~~~~~~~~~~~~~~-----------------~~~------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |+. .+++.+++.+++.+.                 ..+                        ...++.+|++|||||||
T Consensus       394 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  473 (556)
T PRK11819        394 QSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT  473 (556)
T ss_pred             CchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            864 444444444333211                 000                        11258899999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +      +..+.++|.++    +.|||++|||++++          ..+||++++|++
T Consensus       474 ~~LD~~~~~~l~~~l~~~----~~tvi~vtHd~~~~----------~~~~d~i~~l~~  517 (556)
T PRK11819        474 NDLDVETLRALEEALLEF----PGCAVVISHDRWFL----------DRIATHILAFEG  517 (556)
T ss_pred             CCCCHHHHHHHHHHHHhC----CCeEEEEECCHHHH----------HHhCCEEEEEEC
Confidence            8      34566666654    23899999999999          999999999973

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.90  E-value=1.7e-23  Score=163.15  Aligned_cols=144  Identities=18%  Similarity=0.186  Sum_probs=109.3

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-----------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-----------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-----------~~~g~~i~~~~~~~~~~~   73 (240)
                      |+.++|++.+.     |-++||+|.+||++.|+||+|||||||+ ..+.|.           .++++++...+..   + 
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLl-s~~~G~La~~F~~~G~~~l~~~~l~~lPa~---q-   76 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLL-SWMIGALAGQFSCTGELWLNEQRLDMLPAA---Q-   76 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHH-HHHHhhcccCcceeeEEEECCeeccccchh---h-
Confidence            67899999775     8899999999999999999999999999 888884           3455555554432   1 


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh--h------------------------------c---------hhhhccCcEE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK--L------------------------------G---------DDAYAKLDVI  112 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~--~------------------------------~---------~~l~~~p~ll  112 (240)
                      +..|++||+..+|+.+++.+|+.+..-  +                              +         ..++..|+.+
T Consensus        77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~l  156 (213)
T COG4136          77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKAL  156 (213)
T ss_pred             hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCccee
Confidence            235899999999999999877644210  0                              1         1258899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      +||||.+      ++++.+++..-....|+..++||||...+           ....||+.+.
T Consensus       157 LLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dv-----------pagsrVie~~  208 (213)
T COG4136         157 LLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDV-----------PAGSRVIEMA  208 (213)
T ss_pred             eeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC-----------CCCCeeeeee
Confidence            9999987      34556655443344799999999999988           4567777654

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.89  E-value=3.3e-23  Score=173.57  Aligned_cols=141  Identities=13%  Similarity=0.027  Sum_probs=95.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR   98 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~   98 (240)
                      ++|+||+|++|++++|+||||||||||+ ++|+|+.  ..|. +..+.... .      .+.+...+++.+++.++..+.
T Consensus         3 l~~vs~~i~~Ge~~~l~G~NGsGKSTLl-k~i~Gl~~~~sG~-i~~~~~~~-~------~~~~~~~l~~~ltv~enl~~~   73 (213)
T PRK15177          3 LDKTDFVMGYHEHIGILAAPGSGKTTLT-RLLCGLDAPDEGD-FIGLRGDA-L------PLGANSFILPGLTGEENARMM   73 (213)
T ss_pred             eeeeeEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCCC-EEEecCce-e------ccccccccCCcCcHHHHHHHH
Confidence            6899999999999999999999999999 9999973  2343 21111100 0      011122233333333333221


Q ss_pred             Hh---------------------------------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhc
Q 026304           99 QK---------------------------------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADH  133 (240)
Q Consensus        99 ~~---------------------------------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~  133 (240)
                      ..                                       +...++.+|++++||||++      ...+.+.+.+..+ 
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~-  152 (213)
T PRK15177         74 ASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ-  152 (213)
T ss_pred             HHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh-
Confidence            10                                       1122588999999999966      3356666654433 


Q ss_pred             CCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          134 DGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       134 ~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                       +.++|++||+++.+          ..+||++++|++ ++.++++.+...
T Consensus       153 -~~~ii~vsH~~~~~----------~~~~d~i~~l~~G~i~~~~~~~~~~  191 (213)
T PRK15177        153 -QKGLIVLTHNPRLI----------KEHCHAFGVLLHGKITMCEDLAQAT  191 (213)
T ss_pred             -CCcEEEEECCHHHH----------HHhcCeeEEEECCeEEEeCCHHHHH
Confidence             35799999999999          889999999999 888888766543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.89  E-value=3.1e-23  Score=196.09  Aligned_cols=141  Identities=21%  Similarity=0.161  Sum_probs=102.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .++|+++|++++|     ++++||+|++|++++|+||||||||||+ ++|+|+.  ..| .+.. ...    . ..+|++
T Consensus       320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl-~~l~G~~~p~~G-~i~~-~~~----~-~i~~v~  391 (552)
T TIGR03719       320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLF-RMITGQEQPDSG-TIKI-GET----V-KLAYVD  391 (552)
T ss_pred             CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHH-HHHcCCCCCCCe-EEEE-CCc----e-EEEEEe
Confidence            3589999999998     8999999999999999999999999999 9999973  233 2322 111    0 246777


Q ss_pred             ccC-ceecceecCcchhHH-----------------Hhh------------------------chhhhccCcEEEEcCcc
Q 026304           81 HDG-AKLPCWALPELTSFR-----------------QKL------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        81 q~~-~~~~~~~~~~~~~~~-----------------~~~------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |+. .+++.+++.+++.+.                 ..+                        ...++.+|++||||||+
T Consensus       392 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt  471 (552)
T TIGR03719       392 QSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT  471 (552)
T ss_pred             CCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence            764 244444443332210                 000                        11258999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +      +..+.++|+++    +.|||++|||++++          ..+||++++|++
T Consensus       472 ~~LD~~~~~~l~~~l~~~----~~~viivsHd~~~~----------~~~~d~i~~l~~  515 (552)
T TIGR03719       472 NDLDVETLRALEEALLEF----AGCAVVISHDRWFL----------DRIATHILAFEG  515 (552)
T ss_pred             CCCCHHHHHHHHHHHHHC----CCeEEEEeCCHHHH----------HHhCCEEEEEEC
Confidence            8      34566666655    23899999999999          899999999974

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.89  E-value=3.2e-24  Score=169.97  Aligned_cols=146  Identities=20%  Similarity=0.154  Sum_probs=114.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ++++++.+.-     |+++||++.+||+++|+||+|||||||+ |+++.+        .+.|+++....+...+.  ...
T Consensus         4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStll-k~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq--~Vs   80 (223)
T COG4619           4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLL-KIVASLISPTSGTLLFEGEDVSTLKPEAYRQ--QVS   80 (223)
T ss_pred             hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHH-HHHHhccCCCCceEEEcCccccccChHHHHH--HHH
Confidence            4555654432     8999999999999999999999999999 999886        56788888776654322  236


Q ss_pred             EEEccCceecceecCcchhHHHhh--------------------------------ch---------hhhccCcEEEEcC
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKL--------------------------------GD---------DAYAKLDVIGIDE  116 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------~~---------~l~~~p~lllLDE  116 (240)
                      |+.|.+.+|+. |+++|+.|.-++                                ||         .+..-|++|||||
T Consensus        81 Y~~Q~paLfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE  159 (223)
T COG4619          81 YCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE  159 (223)
T ss_pred             HHHcCcccccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence            88888888876 567665543211                                11         1467899999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ||+      ...+-++|.++..++...++++|||.+.+          .+.+|+++-+..
T Consensus       160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa----------~rha~k~itl~~  209 (223)
T COG4619         160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQA----------IRHADKVITLQP  209 (223)
T ss_pred             chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHH----------hhhhheEEEecc
Confidence            988      34677888888766889999999999998          899999998876

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.89  E-value=5.3e-23  Score=173.35  Aligned_cols=144  Identities=19%  Similarity=0.153  Sum_probs=98.3

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceec--ceecCcchhH-----
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP--CWALPELTSF-----   97 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~--~~~~~~~~~~-----   97 (240)
                      |++++|++++|+||||||||||+ ++|+|+. .....+..............+|++|++.++.  ..++.++..+     
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl-~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~   79 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLL-RAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH   79 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence            67899999999999999999999 9999972 2222222211111111123578888764421  1222221110     


Q ss_pred             ------------------HHhh-----------------------chhhhccCcEEEEcCccC------hHHHHHHHHHH
Q 026304           98 ------------------RQKL-----------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNA  130 (240)
Q Consensus        98 ------------------~~~~-----------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l  130 (240)
                                        ...+                       ...++.+|++|++|||++      +..+.++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~  159 (223)
T TIGR03771        80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL  159 (223)
T ss_pred             cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence                              0000                       122589999999999988      45789999988


Q ss_pred             HhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCccee
Q 026304          131 ADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFF  181 (240)
Q Consensus       131 ~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~  181 (240)
                      .+ +|.|||++|||++++          ..+||++++++.++...|+++.+
T Consensus       160 ~~-~~~tvii~sH~~~~~----------~~~~d~i~~l~G~i~~~~~~~~~  199 (223)
T TIGR03771       160 AG-AGTAILMTTHDLAQA----------MATCDRVVLLNGRVIADGTPQQL  199 (223)
T ss_pred             HH-cCCEEEEEeCCHHHH----------HHhCCEEEEECCEEEeecCHHHh
Confidence            76 699999999999999          89999999994387777766543

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.89  E-value=1.7e-23  Score=200.74  Aligned_cols=158  Identities=16%  Similarity=0.189  Sum_probs=98.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h-CCce-------EEeeccch-hcccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D-NGRN-------IAMIKSSK-DTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~-~g~~-------i~~~~~~~-~~~~~   74 (240)
                      ||+++||+++|     ++++||+|++|++++|+||||||||||| ++|+|+. . .|.-       +...++.. .....
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLL-kiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~   79 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL-ALLKNEISADGGSYTFPGNWQLAWVNQETPALPQP   79 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCC
Confidence            68999999999     8999999999999999999999999999 9999972 2 2221       11111100 00001


Q ss_pred             CCeEEEccCceeccee--------------------------cCcch----hH------------------------HHh
Q 026304           75 IDSVVTHDGAKLPCWA--------------------------LPELT----SF------------------------RQK  100 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~--------------------------~~~~~----~~------------------------~~~  100 (240)
                      ..+++++....+..++                          ..+..    .+                        ...
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence            1122222110000000                          00000    00                        000


Q ss_pred             hchhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccC
Q 026304          101 LGDDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCG  176 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g  176 (240)
                      ++..++.+|++|||||||+ .+ .-.+.|.++..+.+.|||+||||.+++          ..+||++++|++ ++. +.|
T Consensus       160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l----------~~~~d~i~~L~~G~i~~~~g  229 (638)
T PRK10636        160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFL----------DPIVDKIIHIEQQSLFEYTG  229 (638)
T ss_pred             HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHH----------HHhcCEEEEEeCCEEEEecC
Confidence            1223689999999999999 22 222233333332467999999999999          999999999998 664 455


Q ss_pred             Cc
Q 026304          177 KR  178 (240)
Q Consensus       177 ~~  178 (240)
                      ..
T Consensus       230 ~~  231 (638)
T PRK10636        230 NY  231 (638)
T ss_pred             CH
Confidence            43

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.89  E-value=1.5e-23  Score=216.75  Aligned_cols=156  Identities=17%  Similarity=0.042  Sum_probs=124.1

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++||+++|       |+|+||+|++||.+||+|++|||||||+ ++|.|+        .++|.++..++.... |. 
T Consensus      1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~-~lL~rl~~~~~G~I~IdG~dI~~i~~~~L-R~- 1360 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLT-LGLFRINESAEGEIIIDGLNIAKIGLHDL-RF- 1360 (1522)
T ss_pred             cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCccCCCCeEEECCEEccccCHHHH-Hh-
Confidence            59999999999       8999999999999999999999999999 999997        467888877654432 22 


Q ss_pred             CCeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~  108 (240)
                      ..++++|++.+|+. |+.+|++...                     .                         +++.++++
T Consensus      1361 ~i~iVpQdp~LF~g-TIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957      1361 KITIIPQDPVLFSG-SLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred             cCeEECCCCcccCc-cHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence            35899999998875 5655543110                     0                         01225899


Q ss_pred             CcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+ .     ..+.+.|++..  .++|||+++|+++.+           ..||||++|++ +++..|+++++
T Consensus      1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~ti-----------~~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957      1440 TKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNTI-----------MDYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence            99999999998 1     24666666654  479999999999887           56999999999 99999998765


Q ss_pred             e
Q 026304          182 T  182 (240)
Q Consensus       182 ~  182 (240)
                      .
T Consensus      1507 l 1507 (1522)
T TIGR00957      1507 L 1507 (1522)
T ss_pred             H
Confidence            4

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.89  E-value=5.6e-23  Score=175.80  Aligned_cols=131  Identities=20%  Similarity=0.067  Sum_probs=92.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR   98 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~   98 (240)
                      |+..++++++|++++|+||||||||||+ ++|+|+.  ..|. +... ..      ..+|++|........++.+++...
T Consensus        15 l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~L~G~~~p~~G~-i~~~-g~------~i~~~~q~~~~~~~~tv~e~l~~~   85 (246)
T cd03237          15 LEVEGGSISESEVIGILGPNGIGKTTFI-KMLAGVLKPDEGD-IEIE-LD------TVSYKPQYIKADYEGTVRDLLSSI   85 (246)
T ss_pred             EEEecCCcCCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCCe-EEEC-Cc------eEEEecccccCCCCCCHHHHHHHH
Confidence            4555666678999999999999999999 9999973  2232 2111 00      134555554333333333322110


Q ss_pred             ---------------Hh-----------------------hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcC
Q 026304           99 ---------------QK-----------------------LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHD  134 (240)
Q Consensus        99 ---------------~~-----------------------~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~  134 (240)
                                     ..                       +...++.+|+++|||||++      +..+.++|++++++.
T Consensus        86 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~  165 (246)
T cd03237          86 TKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN  165 (246)
T ss_pred             hhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence                           00                       1123689999999999988      457888999987656


Q ss_pred             CCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          135 GKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       135 g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++|||++|||++++          ..+||++++|+.
T Consensus       166 ~~tiiivsHd~~~~----------~~~~d~i~~l~~  191 (246)
T cd03237         166 EKTAFVVEHDIIMI----------DYLADRLIVFEG  191 (246)
T ss_pred             CCEEEEEeCCHHHH----------HHhCCEEEEEcC
Confidence            89999999999999          889999999987

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PTZ00243 ABC transporter; Provisional

Probab=99.89  E-value=1.6e-23  Score=216.55  Aligned_cols=156  Identities=17%  Similarity=0.054  Sum_probs=122.7

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++||+++|       |+|+||+|++||.++|+|++|||||||+ ++|.|+        .++|.++..++.... | +
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl-~lLlrl~~p~~G~I~IDG~di~~i~l~~L-R-~ 1384 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVEVCGGEIRVNGREIGAYGLREL-R-R 1384 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEEcccCCHHHH-H-h
Confidence            59999999999       8999999999999999999999999999 999997        467888776654332 2 3


Q ss_pred             CCeEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~  108 (240)
                      ..++++|++.+|+. |+.+|+.....                                              +++.++++
T Consensus      1385 ~I~iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1385 QFSMIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             cceEECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence            46999999998875 56554432100                                              01124775


Q ss_pred             -CcEEEEcCccCh------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          109 -LDVIGIDEAQFF------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       109 -p~lllLDEP~~~------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                       |++|||||||+-      ..+.+.|++..  .++|||+++|+++.+           ..||+|++|++ ++..+|++++
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~ti-----------~~~DrIlVLd~G~VvE~Gt~~e 1530 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLHTV-----------AQYDKIIVMDHGAVAEMGSPRE 1530 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHHHH-----------HhCCEEEEEECCEEEEECCHHH
Confidence             899999999991      24666666653  479999999999887           67999999999 9999999877


Q ss_pred             ee
Q 026304          181 FT  182 (240)
Q Consensus       181 ~~  182 (240)
                      +.
T Consensus      1531 Ll 1532 (1560)
T PTZ00243       1531 LV 1532 (1560)
T ss_pred             HH
Confidence            54

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.89  E-value=8.5e-23  Score=190.55  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=105.3

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEcc
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      .+|+++|++++|     ++++||++.+|+.+||+|+||||||||| ++|+|.. .+...+...+.   .   ..+|+.|+
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLL-kilaG~~~~~~G~i~~~~~---~---~v~~l~Q~   74 (530)
T COG0488           2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLL-KILAGELEPDSGEVTRPKG---L---RVGYLSQE   74 (530)
T ss_pred             ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHH-HHHcCCCcCCCCeEeecCC---c---eEEEeCCC
Confidence            479999999999     8999999999999999999999999999 9999963 22222221110   0   12566665


Q ss_pred             CceecceecCc---------------------------------------------------------------------
Q 026304           83 GAKLPCWALPE---------------------------------------------------------------------   93 (240)
Q Consensus        83 ~~~~~~~~~~~---------------------------------------------------------------------   93 (240)
                      ....+..++.+                                                                     
T Consensus        75 ~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~L  154 (530)
T COG0488          75 PPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSL  154 (530)
T ss_pred             CCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhc
Confidence            54443322211                                                                     


Q ss_pred             --chhHHHhhchhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304           94 --LTSFRQKLGDDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus        94 --~~~~~~~~~~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                        ....+..++..++.+||+|||||||+ .+ +-+++|.+...+...|+|+||||-.|+          -.+|++|+.++
T Consensus       155 SGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FL----------d~V~t~I~~ld  224 (530)
T COG0488         155 SGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFL----------DNVATHILELD  224 (530)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHH----------HHHhhheEEec
Confidence              00111112233689999999999999 33 445556554433333999999999999          99999999999


Q ss_pred             c-eee-ccCC
Q 026304          170 A-RCE-LCGK  177 (240)
Q Consensus       170 ~-~~~-~~g~  177 (240)
                      . ++. +.|.
T Consensus       225 ~g~l~~y~Gn  234 (530)
T COG0488         225 RGKLTPYKGN  234 (530)
T ss_pred             CCceeEecCC
Confidence            8 543 4443

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.89  E-value=9.4e-23  Score=195.66  Aligned_cols=155  Identities=15%  Similarity=0.105  Sum_probs=105.4

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      ..+|+++|++++|     ++++||+|.+|++++|+||||||||||| ++|+|+.  ..| .+.. ...    . ..+|++
T Consensus       317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~G~~~p~~G-~i~~-~~~----~-~i~y~~  388 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLL-KLMLGQLQADSG-RIHC-GTK----L-EVAYFD  388 (635)
T ss_pred             CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCc-EEEE-CCC----c-EEEEEe
Confidence            4589999999998     8999999999999999999999999999 9999973  234 2322 111    1 136777


Q ss_pred             ccC-ceecceecCcchhHH-----------------Hhh------------------------chhhhccCcEEEEcCcc
Q 026304           81 HDG-AKLPCWALPELTSFR-----------------QKL------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        81 q~~-~~~~~~~~~~~~~~~-----------------~~~------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |.. .+++.+++.+++.+.                 ..+                        ...++.+|++|||||||
T Consensus       389 q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt  468 (635)
T PRK11147        389 QHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT  468 (635)
T ss_pred             CcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            753 344444443322110                 000                        11258899999999999


Q ss_pred             C-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec-c-eee-ccCCcce
Q 026304          119 F-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT-A-RCE-LCGKRAF  180 (240)
Q Consensus       119 ~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~-~-~~~-~~g~~~~  180 (240)
                      + .+ .-.+.|.++..+.+.|||+||||.+++          ..+||++++|+ + ++. +.|+-..
T Consensus       469 ~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~----------~~~~d~i~~l~~~g~i~~~~g~y~~  525 (635)
T PRK11147        469 NDLDVETLELLEELLDSYQGTVLLVSHDRQFV----------DNTVTECWIFEGNGKIGRYVGGYHD  525 (635)
T ss_pred             CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHH----------HHhcCEEEEEeCCCeEEEccCCHHH
Confidence            8 22 222333333332356999999999999          89999999997 5 543 4454433

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.89  E-value=6.1e-23  Score=193.89  Aligned_cols=149  Identities=16%  Similarity=0.118  Sum_probs=108.7

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .++++|++++|      ++|+||++++|+.++|+||||||||||+ ++|+|+        .++|.++...+..  .....
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~-~ll~g~~~~~~G~i~~~g~~~~~~~~~--~~~~~  398 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVTAEQPE--DYRKL  398 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEECCCCCHH--HHhhh
Confidence            69999999998      8999999999999999999999999999 999997        2455554433221  11234


Q ss_pred             CeEEEccCceecceecCcc---------hhHHHh----------------------------hchhhhccCcEEEEcCcc
Q 026304           76 DSVVTHDGAKLPCWALPEL---------TSFRQK----------------------------LGDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~---------~~~~~~----------------------------~~~~l~~~p~lllLDEP~  118 (240)
                      .++++|++.+++.. +.++         ..+...                            +++.++.+|++|+|||||
T Consensus       399 i~~v~q~~~lf~~t-i~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~t  477 (547)
T PRK10522        399 FSAVFTDFHLFDQL-LGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWA  477 (547)
T ss_pred             eEEEecChhHHHHh-hccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            58999988776542 2111         000000                            122368999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      +      ...+.+.+.+..+..++|+|++||+++.+           ..||+|++|++ ++.
T Consensus       478 s~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-----------~~~d~i~~l~~G~i~  528 (547)
T PRK10522        478 ADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-----------IHADRLLEMRNGQLS  528 (547)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-----------HhCCEEEEEECCEEE
Confidence            8      23566666655432589999999999765           68999999998 655

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.89  E-value=3.6e-23  Score=213.52  Aligned_cols=156  Identities=10%  Similarity=0.031  Sum_probs=122.5

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++||+++|       |+|+||+|++||.++|+|++|||||||+ ++|.|+       .++|.++..++... .| ..
T Consensus      1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl-~lL~rl~~~~G~I~IdG~di~~i~~~~-lR-~~ 1293 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLL-SALLRLLSTEGEIQIDGVSWNSVTLQT-WR-KA 1293 (1490)
T ss_pred             eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhhhcCCCcEEEECCEEcccCCHHH-HH-hc
Confidence            69999999999       8999999999999999999999999999 999997       34666665554332 22 23


Q ss_pred             CeEEEccCceecceecCcchhHHH---------------------h-------------------------hchhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ---------------------K-------------------------LGDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~---------------------~-------------------------~~~~l~~~p  109 (240)
                      .++++|++.+|+. |+.+|++...                     .                         +++.++++|
T Consensus      1294 is~IpQdp~LF~G-TIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271      1294 FGVIPQKVFIFSG-TFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred             eEEEeCCCccCcc-CHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence            5899999998875 5555443211                     0                         012258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ++|+|||||+      ...+.+.|++..  .++|||+++|+++.+           ..||||++|++ +++..|+|.++.
T Consensus      1373 ~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~ti-----------~~~DrIlvL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271      1373 KILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVEAL-----------LECQQFLVIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH-----------HhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999998      235677777654  479999999999887           56999999999 999999987754

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.88  E-value=1.4e-22  Score=207.83  Aligned_cols=158  Identities=17%  Similarity=0.133  Sum_probs=119.7

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----C-CceEEeeccch-hcccC
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----N-GRNIAMIKSSK-DTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~-g~~i~~~~~~~-~~~~~   74 (240)
                      +++++||++.|         |+|||+++++|++++|+||||||||||| ++|+|...    . |. +....... ....+
T Consensus       759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL-~~Lag~~~~g~~~~G~-I~i~G~~~~~~~~~  836 (1394)
T TIGR00956       759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLL-NVLAERVTTGVITGGD-RLVNGRPLDSSFQR  836 (1394)
T ss_pred             eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeE-EEECCEECChhhhc
Confidence            68999998876         8999999999999999999999999999 99999742    2 22 22111110 11122


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh-------------------------------------------------chhh
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL-------------------------------------------------GDDA  105 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~~~l  105 (240)
                      ..+|++|++.+++.+|+.+++.+...+                                                 +.++
T Consensus       837 ~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL  916 (1394)
T TIGR00956       837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVEL  916 (1394)
T ss_pred             ceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHH
Confidence            358999988777777777766542110                                                 1125


Q ss_pred             hccCc-EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccC
Q 026304          106 YAKLD-VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCG  176 (240)
Q Consensus       106 ~~~p~-lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g  176 (240)
                      +.+|+ +|+|||||+      ...+++.|+++++ .|.|||+++|+++..         +...||++++|++  ++++.|
T Consensus       917 ~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~---------~~~~~D~vl~L~~GG~iv~~G  986 (1394)
T TIGR00956       917 VAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAI---------LFEEFDRLLLLQKGGQTVYFG  986 (1394)
T ss_pred             HcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHH---------HHHhcCEEEEEcCCCEEEEEC
Confidence            88997 999999988      3579999999987 699999999999863         1578999999986  788888


Q ss_pred             Ccc
Q 026304          177 KRA  179 (240)
Q Consensus       177 ~~~  179 (240)
                      +++
T Consensus       987 ~~~  989 (1394)
T TIGR00956       987 DLG  989 (1394)
T ss_pred             Ccc
Confidence            864

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.88  E-value=9.2e-23  Score=195.11  Aligned_cols=149  Identities=21%  Similarity=0.227  Sum_probs=115.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC----ceEEeeccc--hhcccCCCeEEEccCceecceecCcc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG----RNIAMIKSS--KDTRYAIDSVVTHDGAKLPCWALPEL   94 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g----~~i~~~~~~--~~~~~~~~~~v~q~~~~~~~~~~~~~   94 (240)
                      |+|+|+++++||+++|+||||||||||| ++|+|....+    .++......  .....+..+|++|++.+++.+|+.++
T Consensus        41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL-~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~  119 (617)
T TIGR00955        41 LKNVSGVAKPGELLAVMGSSGAGKTTLM-NALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREH  119 (617)
T ss_pred             ccCCEEEEeCCeEEEEECCCCCCHHHHH-HHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHH
Confidence            8999999999999999999999999999 9999963221    112211111  11112245899999998988888877


Q ss_pred             hhHHHhh--------------------------------c-------------------hhhhccCcEEEEcCccC----
Q 026304           95 TSFRQKL--------------------------------G-------------------DDAYAKLDVIGIDEAQF----  119 (240)
Q Consensus        95 ~~~~~~~--------------------------------~-------------------~~l~~~p~lllLDEP~~----  119 (240)
                      +.+...+                                +                   .+++.+|++++||||++    
T Consensus       120 l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~  199 (617)
T TIGR00955       120 LMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS  199 (617)
T ss_pred             HHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhH
Confidence            6543210                                1                   12588999999999988    


Q ss_pred             --hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          120 --FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                        ...+++.|+++++ .|+|||+++|+++ .+          ..+||++++|++ ++++.|++++.
T Consensus       200 ~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i----------~~~~D~i~ll~~G~~v~~G~~~~~  254 (617)
T TIGR00955       200 FMAYSVVQVLKGLAQ-KGKTIICTIHQPSSEL----------FELFDKIILMAEGRVAYLGSPDQA  254 (617)
T ss_pred             HHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHH----------HHHhceEEEeeCCeEEEECCHHHH
Confidence              3479999999987 6999999999996 67          799999999999 99999987643

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.88  E-value=6.1e-23  Score=182.25  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=100.7

Q ss_pred             EEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhh------
Q 026304           36 IMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL------  101 (240)
Q Consensus        36 iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------  101 (240)
                      |+||||||||||+ ++|+|+.        ++|+++...++   .+ ...+|++|+..+++.+++.++..+....      
T Consensus         1 l~G~nGsGKSTLl-~~iaGl~~p~~G~I~i~g~~i~~~~~---~~-~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~   75 (325)
T TIGR01187         1 LLGPSGCGKTTLL-RLLAGFEQPDSGSIMLDGEDVTNVPP---HL-RHINMVFQSYALFPHMTVEENVAFGLKMRKVPRA   75 (325)
T ss_pred             CcCCCCCCHHHHH-HHHHCCCCCCceEEEECCEECCCCCH---HH-CCEEEEecCccccCCCcHHHHHHHHHhhcCCCHH
Confidence            6899999999999 9999972        34443322211   11 2358999998888888888776542110      


Q ss_pred             ------------------------------------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEE
Q 026304          102 ------------------------------------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVV  139 (240)
Q Consensus       102 ------------------------------------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi  139 (240)
                                                          ...++.+|++||||||++      +..+.+.|+++.++.|.|||
T Consensus        76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii  155 (325)
T TIGR01187        76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFV  155 (325)
T ss_pred             HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence                                                112589999999999988      45788899988765689999


Q ss_pred             EEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          140 VAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       140 ~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|||++++          ..+|||+++|++ ++...|+++++
T Consensus       156 ivTHd~~e~----------~~~~d~i~vl~~G~i~~~g~~~~~  188 (325)
T TIGR01187       156 FVTHDQEEA----------MTMSDRIAIMRKGKIAQIGTPEEI  188 (325)
T ss_pred             EEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999999          899999999999 88888877643

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PLN03073 ABC transporter F family; Provisional

Probab=99.88  E-value=2.8e-22  Score=193.92  Aligned_cols=150  Identities=13%  Similarity=0.110  Sum_probs=101.8

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      ++|+++|++++|      ++++||+|.+|++++|+||||||||||| ++|+|+.  ..| .+.. ..    +. ..+|++
T Consensus       507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLL-k~L~Gll~p~~G-~I~~-~~----~~-~igyv~  578 (718)
T PLN03073        507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTIL-KLISGELQPSSG-TVFR-SA----KV-RMAVFS  578 (718)
T ss_pred             ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCc-eEEE-CC----ce-eEEEEe
Confidence            589999999988      7899999999999999999999999999 9999973  233 2321 11    11 236777


Q ss_pred             ccCceecceecCcch-----------------hHHHh------------------------hchhhhccCcEEEEcCccC
Q 026304           81 HDGAKLPCWALPELT-----------------SFRQK------------------------LGDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        81 q~~~~~~~~~~~~~~-----------------~~~~~------------------------~~~~l~~~p~lllLDEP~~  119 (240)
                      |+...  .+++..+.                 .+...                        +...++.+|++|||||||+
T Consensus       579 Q~~~~--~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~  656 (718)
T PLN03073        579 QHHVD--GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN  656 (718)
T ss_pred             ccccc--cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            75311  11111000                 00000                        0122588999999999998


Q ss_pred             -hH--HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCcc
Q 026304          120 -FE--DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRA  179 (240)
Q Consensus       120 -~~--~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~  179 (240)
                       .+  ....++..+.+ .+.|||++|||++++          ..+||++++|++ ++. +.|+..
T Consensus       657 ~LD~~s~~~l~~~L~~-~~gtvIivSHd~~~i----------~~~~drv~~l~~G~i~~~~g~~~  710 (718)
T PLN03073        657 HLDLDAVEALIQGLVL-FQGGVLMVSHDEHLI----------SGSVDELWVVSEGKVTPFHGTFH  710 (718)
T ss_pred             CCCHHHHHHHHHHHHH-cCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEeCCCHH
Confidence             21  22223333333 234999999999999          999999999988 665 556544

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.88  E-value=1.5e-22  Score=194.25  Aligned_cols=45  Identities=18%  Similarity=0.121  Sum_probs=43.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ||+++|++++|     ++|+||+|++|++++|+||||||||||| ++|+|+
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLL-riiaG~   52 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLM-KILNGE   52 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHH-HHHcCC
Confidence            79999999999     8999999999999999999999999999 999997

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.88  E-value=7.8e-23  Score=210.21  Aligned_cols=146  Identities=15%  Similarity=0.092  Sum_probs=109.4

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------h-CCceEEeeccchhcc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------D-NGRNIAMIKSSKDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~-~g~~i~~~~~~~~~~   72 (240)
                      .|+++||+++|        |+|+||+|++|++++|+||||||||||+ ++|.|+.        + +|.++...+.. ..|
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl-~lL~gl~~p~~G~I~i~~g~~i~~~~~~-~lr  459 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTIL-KLIERLYDPTEGDIIINDSHNLKDINLK-WWR  459 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHH-HHHHHhccCCCCeEEEeCCcchhhCCHH-HHH
Confidence            58999999998        7899999999999999999999999999 9999972        2 22333222211 112


Q ss_pred             cCCCeEEEccCceecceecCcchhHH------------------------------------------------------
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFR------------------------------------------------------   98 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~------------------------------------------------------   98 (240)
                       ...++|+|++.+|+. |+.+|+.+.                                                      
T Consensus       460 -~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  537 (1466)
T PTZ00265        460 -SKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEM  537 (1466)
T ss_pred             -HhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhc
Confidence             235899998877753 444433221                                                      


Q ss_pred             -------------------------Hhh-------------------------chhhhccCcEEEEcCccC------hHH
Q 026304           99 -------------------------QKL-------------------------GDDAYAKLDVIGIDEAQF------FED  122 (240)
Q Consensus        99 -------------------------~~~-------------------------~~~l~~~p~lllLDEP~~------~~~  122 (240)
                                               ..+                         +..++.+|++|||||||+      ...
T Consensus       538 ~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~  617 (1466)
T PTZ00265        538 RKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL  617 (1466)
T ss_pred             ccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence                                     000                         122589999999999988      346


Q ss_pred             HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +.+.|.++.++.|+|+|++||+++.+           ..||+|++|++
T Consensus       618 i~~~L~~~~~~~g~TvIiIsHrls~i-----------~~aD~Iivl~~  654 (1466)
T PTZ00265        618 VQKTINNLKGNENRITIIIAHRLSTI-----------RYANTIFVLSN  654 (1466)
T ss_pred             HHHHHHHHhhcCCCEEEEEeCCHHHH-----------HhCCEEEEEeC
Confidence            88888888653589999999999877           58999999986

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.88  E-value=2.3e-22  Score=190.28  Aligned_cols=149  Identities=20%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~   71 (240)
                      .|+++|++++|          |+|+||++++|++++|+||||||||||+ ++|+|+        .++|.++...+... .
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~-~ll~g~~~p~~G~i~~~g~~i~~~~~~~-~  414 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLA-KLFCGLYIPQEGEILLDGAAVSADSRDD-Y  414 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHH-H
Confidence            69999999987          5789999999999999999999999999 999996        24455544332221 1


Q ss_pred             ccCCCeEEEccCceecceecCcch---------hHHHh-----------------------------hchhhhccCcEEE
Q 026304           72 RYAIDSVVTHDGAKLPCWALPELT---------SFRQK-----------------------------LGDDAYAKLDVIG  113 (240)
Q Consensus        72 ~~~~~~~v~q~~~~~~~~~~~~~~---------~~~~~-----------------------------~~~~l~~~p~lll  113 (240)
                      + ...++++|++.+|......+..         .....                             +.+.++.+|++++
T Consensus       415 ~-~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ili  493 (555)
T TIGR01194       415 R-DLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILL  493 (555)
T ss_pred             H-hhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            2 2358999988776543221100         00000                             0122689999999


Q ss_pred             EcCccC------hHHHHHHHH-HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          114 IDEAQF------FEDLYEFCC-NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~-~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      |||||+      ...+.+.+. .+.. .++|+|++||+++.+           ..||+|++|++ ++.
T Consensus       494 lDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~~~~-----------~~~d~i~~l~~G~i~  549 (555)
T TIGR01194       494 FDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDDQYF-----------ELADQIIKLAAGCIV  549 (555)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccHHHH-----------HhCCEEEEEECCEEE
Confidence            999988      234555443 4444 589999999999865           68999999998 654

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.87  E-value=8.3e-23  Score=192.15  Aligned_cols=129  Identities=22%  Similarity=0.192  Sum_probs=98.3

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++||+|+|      |+|+||++++|+.++|+||||||||||+ ++|.|+        .++|.++..+ ... .| ..
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~i~g~~i~~~-~~~-lr-~~  409 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLL-MLLTGLLDPLQGEVTLDGVSVSSL-QDE-LR-RR  409 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhH-HHH-HH-hh
Confidence            59999999999      8999999999999999999999999999 999997        3466666554 322 22 24


Q ss_pred             CeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~~  108 (240)
                      .+|++|++.+|+. |+.+|..+..                      .+                         ++.++.+
T Consensus       410 i~~V~Q~~~lF~~-TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~  488 (529)
T TIGR02868       410 ISVFAQDAHLFDT-TVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLAD  488 (529)
T ss_pred             eEEEccCcccccc-cHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcC
Confidence            5899999988865 4554433210                      00                         1226899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                      |++|+|||||+      ...+.+.+.++.  .++|+|++||++
T Consensus       489 ~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl  529 (529)
T TIGR02868       489 APILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL  529 (529)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence            99999999998      235677776653  478999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.87  E-value=6.3e-22  Score=203.13  Aligned_cols=157  Identities=20%  Similarity=0.169  Sum_probs=118.7

Q ss_pred             eEEEcceeEee------------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEee--
Q 026304           10 AVTTNQVNSGR------------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMI--   65 (240)
Q Consensus        10 ~l~~~~ls~~~------------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~--   65 (240)
                      .+.++||++..                  |+|+|+++++|++++|+||||||||||| ++|+|...    .|. +...  
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL-~~LaG~~~~g~~~G~-I~inG~  944 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLM-DVLAGRKTGGYIEGD-IRISGF  944 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHH-HHHcCCCCCCcccce-EEECCc
Confidence            57888887652                  7899999999999999999999999999 99999742    232 2111  


Q ss_pred             ccchhcccCCCeEEEccCceecceecCcchhHHHhh--------------------------------------------
Q 026304           66 KSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL--------------------------------------------  101 (240)
Q Consensus        66 ~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~--------------------------------------------  101 (240)
                      +.......+..+|++|++.+++.+|+.+++.+...+                                            
T Consensus       945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140        945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred             cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence            111111112358999998888877777665442110                                            


Q ss_pred             ------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeee
Q 026304          102 ------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       102 ------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                            +.+++.+|++|+|||||+      ...+++.|+++++ .|.|||+++|+++ .+          ..+||++++|
T Consensus      1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i----------~~~~D~vllL 1093 (1470)
T PLN03140       1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDI----------FEAFDELLLM 1093 (1470)
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHH----------HHhCCEEEEE
Confidence                  112589999999999988      4579999999987 6999999999998 46          7899999999


Q ss_pred             cc--eeeccCCcc
Q 026304          169 TA--RCELCGKRA  179 (240)
Q Consensus       169 ~~--~~~~~g~~~  179 (240)
                      ++  ++++.|+++
T Consensus      1094 ~~gG~~v~~G~~~ 1106 (1470)
T PLN03140       1094 KRGGQVIYSGPLG 1106 (1470)
T ss_pred             cCCCEEEEECCcc
Confidence            84  788888753

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.87  E-value=4e-22  Score=189.92  Aligned_cols=149  Identities=21%  Similarity=0.224  Sum_probs=118.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc----eEEeec-c-chhcccCCCeEEEccCceecceecCcc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR----NIAMIK-S-SKDTRYAIDSVVTHDGAKLPCWALPEL   94 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~----~i~~~~-~-~~~~~~~~~~~v~q~~~~~~~~~~~~~   94 (240)
                      |++||.++++||+.||+||+|||||||| ++|+|....|.    ++.... + .........+||.|++.+++.+||+|.
T Consensus        46 L~~vsg~~~~Gel~AimG~SGsGKtTLL-~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~Et  124 (613)
T KOG0061|consen   46 LKGVSGTAKPGELLAIMGPSGSGKTTLL-NALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRET  124 (613)
T ss_pred             eeCcEEEEecCeEEEEECCCCCCHHHHH-HHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHH
Confidence            9999999999999999999999999999 99999643321    122111 1 111222345999999999999999987


Q ss_pred             hhHHHhh--------------------------------------------------chhhhccCcEEEEcCccC-----
Q 026304           95 TSFRQKL--------------------------------------------------GDDAYAKLDVIGIDEAQF-----  119 (240)
Q Consensus        95 ~~~~~~~--------------------------------------------------~~~l~~~p~lllLDEP~~-----  119 (240)
                      +.+.+.+                                                  +.+++.+|.+|++||||+     
T Consensus       125 L~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~  204 (613)
T KOG0061|consen  125 LRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSF  204 (613)
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchh
Confidence            7665432                                                  112699999999999988     


Q ss_pred             -hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          120 -FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       120 -~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                       ..++++.|+++++ .|+|||++-|.+..-         |..+.|++++|.. +++++|++..
T Consensus       205 sA~~vv~~Lk~lA~-~grtVi~tIHQPss~---------lf~lFD~l~lLs~G~~vy~G~~~~  257 (613)
T KOG0061|consen  205 SALQVVQLLKRLAR-SGRTVICTIHQPSSE---------LFELFDKLLLLSEGEVVYSGSPRE  257 (613)
T ss_pred             hHHHHHHHHHHHHh-CCCEEEEEEeCCcHH---------HHHHHhHhhhhcCCcEEEecCHHH
Confidence             3489999999998 599999999998643         4899999999999 9999998754

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.87  E-value=1.8e-22  Score=207.58  Aligned_cols=157  Identities=15%  Similarity=0.131  Sum_probs=115.5

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh------------------------
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD------------------------   57 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~------------------------   57 (240)
                      .|+++||+|+|        |+|+||+|++|+.++|+||||||||||+ ++|.|+.-                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~-~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVM-SLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHH-HHHHHhCCCccccccccccccccccccccccc
Confidence            59999999999        8899999999999999999999999999 99999732                        


Q ss_pred             --------------------------------------CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHH
Q 026304           58 --------------------------------------NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ   99 (240)
Q Consensus        58 --------------------------------------~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~   99 (240)
                                                            +|.++..++..  ..+...+||+|++.+|+. |+.+|+.+..
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~--~lR~~i~~V~Qep~LF~g-TIreNI~~g~ 1320 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLK--DLRNLFSIVSQEPMLFNM-SIYENIKFGK 1320 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHH--HHHhhccEeCCCCccccc-cHHHHHhcCC
Confidence                                                  11222222111  112345899999988864 5554443310


Q ss_pred             ----------------------hh-------------------------chhhhccCcEEEEcCccC------hHHHHHH
Q 026304          100 ----------------------KL-------------------------GDDAYAKLDVIGIDEAQF------FEDLYEF  126 (240)
Q Consensus       100 ----------------------~~-------------------------~~~l~~~p~lllLDEP~~------~~~i~~~  126 (240)
                                            .+                         ++.++.+|++|||||||+      ...+.+.
T Consensus      1321 ~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~ 1400 (1466)
T PTZ00265       1321 EDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400 (1466)
T ss_pred             CCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHH
Confidence                                  00                         123689999999999998      2357777


Q ss_pred             HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-----e-eeccCCccee
Q 026304          127 CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-----R-CELCGKRAFF  181 (240)
Q Consensus       127 l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-----~-~~~~g~~~~~  181 (240)
                      |.++....++|+|+++|+++.+           +.||+|++|++     + +...|+.+++
T Consensus      1401 L~~~~~~~~~TvIiIaHRlsti-----------~~aD~Ivvl~~~~~~G~iv~e~Gth~eL 1450 (1466)
T PTZ00265       1401 IVDIKDKADKTIITIAHRIASI-----------KRSDKIVVFNNPDRTGSFVQAHGTHEEL 1450 (1466)
T ss_pred             HHHHhccCCCEEEEEechHHHH-----------HhCCEEEEEeCCCCCCCEEEEecCHHHH
Confidence            7777522589999999999877           67999999986     3 3467776654

>PLN03073 ABC transporter F family; Provisional

Probab=99.87  E-value=1.8e-22  Score=195.24  Aligned_cols=48  Identities=17%  Similarity=0.033  Sum_probs=44.9

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ..+|+++|++++|     |+|+||+|.+|++++|+||||||||||| ++|+|..
T Consensus       175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLL-r~l~g~~  227 (718)
T PLN03073        175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFL-RYMAMHA  227 (718)
T ss_pred             ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHH-HHHcCCC
Confidence            3489999999999     9999999999999999999999999999 9999853

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.86  E-value=3.8e-22  Score=160.33  Aligned_cols=159  Identities=14%  Similarity=0.096  Sum_probs=120.7

Q ss_pred             ceEEEcceeEee--------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeec
Q 026304            9 AAVTTNQVNSGR--------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIK   66 (240)
Q Consensus         9 ~~l~~~~ls~~~--------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~   66 (240)
                      +.++++|+|+.|              ++.|||++++|+.++|+|.||||||||. |+|+|.        .++|..+..-.
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLa-kMlaGmi~PTsG~il~n~~~L~~~D   81 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLA-KMLAGMIEPTSGEILINDHPLHFGD   81 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHH-HHHhcccCCCCceEEECCccccccc
Confidence            468999999987              6899999999999999999999999999 999997        34555443322


Q ss_pred             cchhcccCCCeEEEccCc--eecceecCcchhHHHh--------------------------------------------
Q 026304           67 SSKDTRYAIDSVVTHDGA--KLPCWALPELTSFRQK--------------------------------------------  100 (240)
Q Consensus        67 ~~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~~~~--------------------------------------------  100 (240)
                      .  ..|...+.++||++.  +-|.+.+...++...+                                            
T Consensus        82 y--~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVa  159 (267)
T COG4167          82 Y--SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVA  159 (267)
T ss_pred             h--HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHH
Confidence            1  223344578999864  2222222211111100                                            


Q ss_pred             hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          101 LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      ++..++.+|++|+.||...      +.++.+++.++.++.|++.|.|+.++..+          ..++|.|++|+. +++
T Consensus       160 LARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~i----------KHi~D~viVM~EG~vv  229 (267)
T COG4167         160 LARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI----------KHISDQVLVMHEGEVV  229 (267)
T ss_pred             HHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHh----------hhhcccEEEEecCcee
Confidence            1234688999999999955      45899999999988999999999999999          999999999999 999


Q ss_pred             ccCCcce
Q 026304          174 LCGKRAF  180 (240)
Q Consensus       174 ~~g~~~~  180 (240)
                      ..|++++
T Consensus       230 E~G~t~~  236 (267)
T COG4167         230 ERGSTAD  236 (267)
T ss_pred             ecCChhh
Confidence            8998765

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.86  E-value=2.9e-22  Score=181.50  Aligned_cols=160  Identities=20%  Similarity=0.180  Sum_probs=125.9

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|.++++++.-       ++++||++.+|+.++|+||||||||||. |+|.|.        .++|.++..+++....+  
T Consensus       334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLa-R~lvG~w~p~~G~VRLDga~l~qWd~e~lG~--  410 (580)
T COG4618         334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLA-RLLVGIWPPTSGSVRLDGADLRQWDREQLGR--  410 (580)
T ss_pred             eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHH-HHHHcccccCCCcEEecchhhhcCCHHHhcc--
Confidence            68999998853       9999999999999999999999999999 999996        45777776665544333  


Q ss_pred             CCeEEEccCceecceecCcchh-HHH-----------h----------h-------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTS-FRQ-----------K----------L-------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~-~~~-----------~----------~-------------------------~~~l~~  107 (240)
                      .+||++|+-.+|+.. +.+|.. |..           +          +                         .+.+..
T Consensus       411 hiGYLPQdVeLF~GT-IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG  489 (580)
T COG4618         411 HIGYLPQDVELFDGT-IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG  489 (580)
T ss_pred             ccCcCcccceecCCc-HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence            469999999988863 433322 210           0          0                         112588


Q ss_pred             cCcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|.+++||||.+ .     ..+.+.|.++++ +|.|+|++||.++.+           ..+|+|++|++ ++...|+.++
T Consensus       490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRPs~L-----------~~~Dkilvl~~G~~~~FG~r~e  557 (580)
T COG4618         490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRPSAL-----------ASVDKILVLQDGRIAAFGPREE  557 (580)
T ss_pred             CCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCHHHH-----------hhcceeeeecCChHHhcCCHHH
Confidence            999999999966 2     358888999887 799999999999876           88999999999 9999998876


Q ss_pred             eeeee
Q 026304          181 FTLRK  185 (240)
Q Consensus       181 ~~~~~  185 (240)
                      .....
T Consensus       558 VLa~~  562 (580)
T COG4618         558 VLAKV  562 (580)
T ss_pred             HHHHh
Confidence            54333

>PRK13409 putative ATPase RIL; Provisional

Probab=99.86  E-value=3.9e-22  Score=189.46  Aligned_cols=141  Identities=19%  Similarity=0.065  Sum_probs=94.2

Q ss_pred             ceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------------------hCCceEEeeccch
Q 026304           15 QVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------------------DNGRNIAMIKSSK   69 (240)
Q Consensus        15 ~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------------------~~g~~i~~~~~~~   69 (240)
                      +++++|      |++++ .+++|++++|+||||||||||+ ++|+|+.                   ++|+++..+....
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLl-kiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~  155 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAV-KILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL  155 (590)
T ss_pred             CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence            367777      89999 8999999999999999999999 9999972                   2222221110000


Q ss_pred             hcccCCCeEEEc----cCceecceecCcchhHH----------Hh-----------------------hchhhhccCcEE
Q 026304           70 DTRYAIDSVVTH----DGAKLPCWALPELTSFR----------QK-----------------------LGDDAYAKLDVI  112 (240)
Q Consensus        70 ~~~~~~~~~v~q----~~~~~~~~~~~~~~~~~----------~~-----------------------~~~~l~~~p~ll  112 (240)
                      .......++.+|    .+.++.. ++.+++...          ..                       ++..++.+|++|
T Consensus       156 ~~~~~~~~~~~q~~~~~p~~~~~-tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll  234 (590)
T PRK13409        156 YNGEIKVVHKPQYVDLIPKVFKG-KVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY  234 (590)
T ss_pred             hccCcceeecccchhhhhhhhcc-hHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            000001123333    2222211 333322110          00                       112258899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |||||++      +..+.++|+++++  |.|||++|||++++          ..+||++++|++
T Consensus       235 lLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~~~l----------~~~~D~v~vl~~  286 (590)
T PRK13409        235 FFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDLAVL----------DYLADNVHIAYG  286 (590)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence            9999988      3478888888864  89999999999999          999999999975

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.86  E-value=3.6e-22  Score=197.36  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=135.6

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      ..+.++++++.|      ++++|+.|++||+.|++|||||||||++ +++.|..        +.|.++.........+ .
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f-~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~-~  640 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTF-KMLTGETKPTSGEALIKGHDITVSTDFQQVR-K  640 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhH-HHHhCCccCCcceEEEecCccccccchhhhh-h
Confidence            468899999999      5799999999999999999999999999 9999972        2333333221111122 3


Q ss_pred             CCeEEEccCceecceecCcchhHHHhhch------------------------------------------hhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKLGD------------------------------------------DAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~l~~~p~ll  112 (240)
                      ..||.||.+.+++.+|..|.+.+..++.|                                          .++.+|+++
T Consensus       641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi  720 (885)
T KOG0059|consen  641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVI  720 (885)
T ss_pred             hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEE
Confidence            35999999999999999988877765422                                          148899999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeeee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLRK  185 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~~  185 (240)
                      +||||++      ++.+++++.++.+ .|+.||++||.++++          ..+|||+.+|.+ +...-|++..+..++
T Consensus       721 ~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMeE~----------EaLCtR~aImv~G~l~ciGs~q~LKsrf  789 (885)
T KOG0059|consen  721 LLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSMEEA----------EALCTRTAIMVIGQLRCIGSPQELKSRY  789 (885)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHH----------HHHhhhhheeecCeeEEecChHHHHhhc
Confidence            9999977      5689999999987 677999999999999          999999999999 887779998888777


Q ss_pred             cCC
Q 026304          186 TEE  188 (240)
Q Consensus       186 ~~~  188 (240)
                      ..+
T Consensus       790 G~g  792 (885)
T KOG0059|consen  790 GSG  792 (885)
T ss_pred             CCc
Confidence            543

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.86  E-value=5.4e-22  Score=195.48  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=124.9

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++||+|.|        ++|+||++++|+.++|+||+||||||.+ .+|.++        .++|.++..++.+..++ 
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI-~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~- 1064 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVI-SLLERFYDPDAGKVKIDGVDIKDLNLKWLRK- 1064 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHH-HHHHHhcCCCCCeEEECCcccccCCHHHHHH-
Confidence            59999999999        9999999999999999999999999998 999886        46788887776544322 


Q ss_pred             CCCeEEEccCceecceecCcchhHHH------------h----------h-------------------------chhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ------------K----------L-------------------------GDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~------------~----------~-------------------------~~~l~  106 (240)
                       ..++|.|++.+|.. |+.+|..+..            +          +                         ++.++
T Consensus      1065 -~i~lVsQEP~LF~~-TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAil 1142 (1228)
T KOG0055|consen 1065 -QIGLVSQEPVLFNG-TIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAIL 1142 (1228)
T ss_pred             -hcceeccCchhhcc-cHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHH
Confidence             35899999999875 4554443320            0          0                         12269


Q ss_pred             ccCcEEEEcCccC-h----H-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF-F----E-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~-~----~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      ++|++|||||.|+ .    + -+.+.|.+..  .|+|.|++.|.+..+           +.||.|.++++ +++..|+.+
T Consensus      1143 RnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLSTI-----------qnaD~I~Vi~~G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1143 RNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLSTI-----------QNADVIAVLKNGKVVEQGTHD 1209 (1228)
T ss_pred             cCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchhhh-----------hcCCEEEEEECCEEEecccHH
Confidence            9999999999999 2    2 3555666654  589999999999998           77999999999 999999988


Q ss_pred             eeee
Q 026304          180 FFTL  183 (240)
Q Consensus       180 ~~~~  183 (240)
                      ++..
T Consensus      1210 ~L~~ 1213 (1228)
T KOG0055|consen 1210 ELLA 1213 (1228)
T ss_pred             HHHh
Confidence            7654

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.86  E-value=1.7e-21  Score=187.61  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=100.0

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEc
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .+|+++|+++.|      ++++||++++||+++|+||||||||||+ ++|+|+. ..+..+.. +    .+ ...+|++|
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl-~lL~Gl~~~~~G~i~~-~----~~-~~i~~v~Q  522 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLF-RILGELWPVYGGRLTK-P----AK-GKLFYVPQ  522 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCeEee-c----CC-CcEEEECC
Confidence            479999999987      8999999999999999999999999999 9999973 22222321 1    11 23478888


Q ss_pred             cCceecceecCcchhH--------------------HHh--------------------------------hchhhhccC
Q 026304           82 DGAKLPCWALPELTSF--------------------RQK--------------------------------LGDDAYAKL  109 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~--------------------~~~--------------------------------~~~~l~~~p  109 (240)
                      ++.+++. ++.++..+                    ...                                ++..++.+|
T Consensus       523 ~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p  601 (659)
T TIGR00954       523 RPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKP  601 (659)
T ss_pred             CCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCC
Confidence            7765543 33332211                    000                                011258999


Q ss_pred             cEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          110 DVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       110 ~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++++|||||+ .+ +..+.+.++.++.|.|+|++||+++.+           .+||++++|+.
T Consensus       602 ~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-----------~~~d~il~l~~  653 (659)
T TIGR00954       602 QFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-----------KYHEYLLYMDG  653 (659)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-----------HhCCEEEEEeC
Confidence            9999999988 22 222223333233589999999999876           78999999964

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.85  E-value=1.9e-21  Score=199.58  Aligned_cols=148  Identities=18%  Similarity=0.089  Sum_probs=112.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch------hCCceEEeeccc----hhcccCCCeEEEccCceeccee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES------DNGRNIAMIKSS----KDTRYAIDSVVTHDGAKLPCWA   90 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~------~~g~~i~~~~~~----~~~~~~~~~~v~q~~~~~~~~~   90 (240)
                      |+|+|+++++||+++|+||||||||||| ++|+|..      ..|. +......    .....+..+|++|++..++.+|
T Consensus        77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLL-k~LaG~~~~~~~~~~G~-I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lT  154 (1394)
T TIGR00956        77 LKPMDGLIKPGELTVVLGRPGSGCSTLL-KTIASNTDGFHIGVEGV-ITYDGITPEEIKKHYRGDVVYNAETDVHFPHLT  154 (1394)
T ss_pred             eeCCEEEEECCEEEEEECCCCCCHHHHH-HHHhCCCCCCCCCceeE-EEECCEehHHHHhhcCceeEEeccccccCCCCC
Confidence            8999999999999999999999999999 9999963      2222 2221110    0111223589999888888777


Q ss_pred             cCcchhHHHh---------------------------h----------------------------chhhhccCcEEEEc
Q 026304           91 LPELTSFRQK---------------------------L----------------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        91 ~~~~~~~~~~---------------------------~----------------------------~~~l~~~p~lllLD  115 (240)
                      +.+++.+...                           +                            +..++.+|++++||
T Consensus       155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD  234 (1394)
T TIGR00956       155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD  234 (1394)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence            7665543210                           0                            01158899999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecCh-hhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDG-DYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~-~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |||+      ..++++.|++++++.|+|||+++|++ +.+          ..++|++++|++ ++++.|+++.
T Consensus       235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i----------~~l~D~v~~L~~G~iv~~G~~~~  297 (1394)
T TIGR00956       235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDA----------YELFDKVIVLYEGYQIYFGPADK  297 (1394)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH----------HHhhceEEEEeCCeEEEECCHHH
Confidence            9988      45799999999875689999999997 577          899999999999 9999998754

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.85  E-value=1.5e-21  Score=176.30  Aligned_cols=160  Identities=18%  Similarity=0.149  Sum_probs=124.4

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      -++++|++|.|      |+||||++.+|+.++++||+|+||||++ |++-++        .++|+++....++.. | +.
T Consensus       537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTim-RlLfRffdv~sGsI~iDgqdIrnvt~~SL-R-s~  613 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIM-RLLFRFFDVNSGSITIDGQDIRNVTQSSL-R-SS  613 (790)
T ss_pred             eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHH-HHHHHHhhccCceEEEcCchHHHHHHHHH-H-Hh
Confidence            69999999999      9999999999999999999999999999 999775        567888766544322 2 34


Q ss_pred             CeEEEccCceecceecCcc---------hhHHH---------hh-------------------c---------hhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPEL---------TSFRQ---------KL-------------------G---------DDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~---------~~~~~---------~~-------------------~---------~~l~~~p  109 (240)
                      +|+|||+..+|++.-..+.         .+..+         ++                   +         +.++.+|
T Consensus       614 IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P  693 (790)
T KOG0056|consen  614 IGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP  693 (790)
T ss_pred             cCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence            6999999988877433311         11110         00                   1         1258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      .+++|||.|+      ...+...|.+++.  +.|-|++.|.++-+           -.||.|+++++ +++..|..+++.
T Consensus       694 ~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLSTi-----------vnAD~ILvi~~G~IvErG~HeeLl  760 (790)
T KOG0056|consen  694 SIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLSTI-----------VNADLILVISNGRIVERGRHEELL  760 (790)
T ss_pred             cEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehhe-----------ecccEEEEEeCCeEeecCcHHHHH
Confidence            9999999988      2367778888875  77889999999987           56999999999 888889887766


Q ss_pred             eee
Q 026304          183 LRK  185 (240)
Q Consensus       183 ~~~  185 (240)
                      .|.
T Consensus       761 ~rd  763 (790)
T KOG0056|consen  761 KRD  763 (790)
T ss_pred             hcc
Confidence            553

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.85  E-value=7.1e-21  Score=177.73  Aligned_cols=146  Identities=18%  Similarity=0.111  Sum_probs=100.2

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeE
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      ....++++|++++|      ++++||.|.+|+.++|+||||+|||||| ++|.|..  ..|.-..  ...    . ..+|
T Consensus       318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLl-k~l~g~~~~~~G~v~~--g~~----v-~igy  389 (530)
T COG0488         318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLL-KLLAGELGPLSGTVKV--GET----V-KIGY  389 (530)
T ss_pred             CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHH-HHHhhhcccCCceEEe--CCc----e-EEEE
Confidence            35689999999999      7899999999999999999999999999 9997742  1221110  000    0 1245


Q ss_pred             EEccCc-eecceecCcc----------hhHHH---h------------------------hchhhhccCcEEEEcCccC-
Q 026304           79 VTHDGA-KLPCWALPEL----------TSFRQ---K------------------------LGDDAYAKLDVIGIDEAQF-  119 (240)
Q Consensus        79 v~q~~~-~~~~~~~~~~----------~~~~~---~------------------------~~~~l~~~p~lllLDEP~~-  119 (240)
                      ..|+.. +.+..++.+.          .....   +                        ++..++.+|.+|||||||+ 
T Consensus       390 f~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh  469 (530)
T COG0488         390 FDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH  469 (530)
T ss_pred             EEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence            555431 1122222111          01111   0                        1122578999999999999 


Q ss_pred             hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          120 FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       120 ~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .+ +-++.|.+...+..-|||+||||..|+          ..+|++++.+.+
T Consensus       470 LDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl----------~~va~~i~~~~~  511 (530)
T COG0488         470 LDIESLEALEEALLDFEGTVLLVSHDRYFL----------DRVATRIWLVED  511 (530)
T ss_pred             CCHHHHHHHHHHHHhCCCeEEEEeCCHHHH----------HhhcceEEEEcC
Confidence            33 455556555555778999999999999          999999999985

>PLN03140 ABC transporter G family member; Provisional

Probab=99.85  E-value=3.4e-21  Score=197.77  Aligned_cols=148  Identities=16%  Similarity=0.181  Sum_probs=111.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-----CCceEEeeccc--hhcccCCCeEEEccCceecceecCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-----NGRNIAMIKSS--KDTRYAIDSVVTHDGAKLPCWALPE   93 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-----~g~~i~~~~~~--~~~~~~~~~~v~q~~~~~~~~~~~~   93 (240)
                      |+|+|+.+++|++++|+||||||||||| ++|+|...     .|. +......  .....+..+|++|+...++.+|+.+
T Consensus       181 L~~vs~~i~~Ge~~~llGpnGSGKSTLL-k~LaG~l~~~~~~~G~-I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~E  258 (1470)
T PLN03140        181 LKDASGIIKPSRMTLLLGPPSSGKTTLL-LALAGKLDPSLKVSGE-ITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKE  258 (1470)
T ss_pred             ccCCeEEEeCCeEEEEEcCCCCCHHHHH-HHHhCCCCCCCcceeE-EEECCEechhhcccceeEEecccccCCCcCcHHH
Confidence            9999999999999999999999999999 99999732     222 2211110  1111223589999887777777665


Q ss_pred             chhHHHh-----------------------------------------------------h-------------------
Q 026304           94 LTSFRQK-----------------------------------------------------L-------------------  101 (240)
Q Consensus        94 ~~~~~~~-----------------------------------------------------~-------------------  101 (240)
                      ++.+...                                                     +                   
T Consensus       259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS  338 (1470)
T PLN03140        259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS  338 (1470)
T ss_pred             HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence            5433210                                                     0                   


Q ss_pred             ---------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecCh-hhhhcccchHHHHHhhccce
Q 026304          102 ---------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDG-DYLRRSFGSVLDIIPLADTV  165 (240)
Q Consensus       102 ---------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~-~~~~~~f~~~~~L~~~ad~i  165 (240)
                               +..++.+|+++++|||++      ..++++.|+++++..|.|||+++|++ +++          ..++|+|
T Consensus       339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i----------~~lfD~v  408 (1470)
T PLN03140        339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET----------FDLFDDI  408 (1470)
T ss_pred             cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH----------HHHhheE
Confidence                     011488999999999988      34799999999865689999999997 577          8999999


Q ss_pred             eeecc-eeeccCCcce
Q 026304          166 TKLTA-RCELCGKRAF  180 (240)
Q Consensus       166 ~~l~~-~~~~~g~~~~  180 (240)
                      ++|++ ++++.|+++.
T Consensus       409 ilL~~G~ivy~G~~~~  424 (1470)
T PLN03140        409 ILLSEGQIVYQGPRDH  424 (1470)
T ss_pred             EEeeCceEEEeCCHHH
Confidence            99999 9999998754

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.84  E-value=2e-21  Score=155.07  Aligned_cols=157  Identities=18%  Similarity=0.179  Sum_probs=111.8

Q ss_pred             eEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-------hhCCceEEeeccchhcccCCCeEEEc
Q 026304           10 AVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-------SDNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus        10 ~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-------~~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      ++.++|++.+- |-.+|.++..||++-++||||||||||| -.++|+       .+.|+++..+......|.+  .|+.|
T Consensus         3 l~qln~v~~~tRL~plS~qv~aGe~~HliGPNGaGKSTLL-A~lAGm~~~sGsi~~~G~~l~~~~~~eLArhR--AYLsQ   79 (248)
T COG4138           3 LMQLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGSGSIQFAGQPLEAWSATELARHR--AYLSQ   79 (248)
T ss_pred             eeeeccccccccccccccccccceEEEEECCCCccHHHHH-HHHhCCCCCCceEEECCcchhHHhHhHHHHHH--HHHhh
Confidence            67899999875 9999999999999999999999999999 999997       3456665554444433332  45555


Q ss_pred             cCceecceecCcchhH--------------------HHhh--------chh----------------hhccCcEEEEcCc
Q 026304           82 DGAKLPCWALPELTSF--------------------RQKL--------GDD----------------AYAKLDVIGIDEA  117 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~--------------------~~~~--------~~~----------------l~~~p~lllLDEP  117 (240)
                      ...-...+.++..+.+                    .+++        +++                +-...++|++|||
T Consensus        80 qq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP  159 (248)
T COG4138          80 QQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP  159 (248)
T ss_pred             ccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence            4322222222211111                    0111        111                1123469999999


Q ss_pred             cC-----hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          118 QF-----FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       118 ~~-----~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      .+     ++ .+..+|.+++. .|.+|||++||++..          .+.||+++.++. ++..||+.++
T Consensus       160 ~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNhT----------LrhA~~~wLL~rG~l~~~G~~~e  218 (248)
T COG4138         160 MNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNHT----------LRHAHRAWLLKRGKLLASGRREE  218 (248)
T ss_pred             CcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhhH----------HHHHHHHHHHhcCeEEeecchhh
Confidence            77     22 46667788887 899999999999999          999999999999 9999998765

>PLN03232 ABC transporter C family member; Provisional

Probab=99.84  E-value=7.6e-21  Score=196.60  Aligned_cols=149  Identities=16%  Similarity=0.158  Sum_probs=112.9

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeEE
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      .++++|++++|        |+|+||++++|+.++|+||+|||||||+ ++|.|...  .|... .       ..+..+|+
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~G~i~-~-------~~~~Iayv  684 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLI-SAMLGELSHAETSSV-V-------IRGSVAYV  684 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCcccCCCEE-E-------ecCcEEEE
Confidence            59999999998        8999999999999999999999999999 99999732  34322 1       12235899


Q ss_pred             EccCceecceecCcchhHHHh----------------------------------------------hchhhhccCcEEE
Q 026304           80 THDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLDVIG  113 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~lll  113 (240)
                      +|++.+++. |+.+|..+...                                              +++.++.+|+++|
T Consensus       685 ~Q~p~Lf~g-TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlL  763 (1495)
T PLN03232        685 PQVSWIFNA-TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYI  763 (1495)
T ss_pred             cCccccccc-cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence            999988875 56555443110                                              0122589999999


Q ss_pred             EcCccC-h-----HHHHH-HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF-F-----EDLYE-FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~-~-----~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++ .     ..+++ .+....  .++|+|++||+++.+           ..||+|++|++ ++...|+.+++
T Consensus       764 LDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~~l-----------~~aD~Ii~L~~G~i~~~Gt~~eL  826 (1495)
T PLN03232        764 FDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLHFL-----------PLMDRIILVSEGMIKEEGTFAEL  826 (1495)
T ss_pred             EcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChhhH-----------HhCCEEEEEeCCEEEEecCHHHH
Confidence            999988 2     23433 333332  479999999999876           67999999999 99988987654

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.83  E-value=3.5e-20  Score=156.64  Aligned_cols=52  Identities=29%  Similarity=0.270  Sum_probs=45.1

Q ss_pred             hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      ++.+|  ++|+||||++      ...+.++|+++++ .|.|||++|||++++           .+||++++|
T Consensus       152 l~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~~~-----------~~~d~i~~l  211 (226)
T cd03270         152 IGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDEDTI-----------RAADHVIDI  211 (226)
T ss_pred             HHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHHHH-----------HhCCEEEEe
Confidence            56787  5999999987      4578899998876 699999999999877           489999999

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.82  E-value=1.9e-20  Score=194.32  Aligned_cols=149  Identities=14%  Similarity=0.133  Sum_probs=113.2

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEE
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      .++++|++++|        |+|+||++++|+.++|+||+|||||||+ ++|.|..  ..|..+..        .+..+|+
T Consensus       614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl-~lLlG~~~~~~GG~I~l--------~~~Iayv  684 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLI-SAMLGELPPRSDASVVI--------RGTVAYV  684 (1622)
T ss_pred             ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHH-HHHHHhhccCCCceEEE--------cCeEEEE
Confidence            59999999998        8899999999999999999999999999 9999973  23123321        1235899


Q ss_pred             EccCceecceecCcchhHHHh----------------------------------------------hchhhhccCcEEE
Q 026304           80 THDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLDVIG  113 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~lll  113 (240)
                      +|++.+++. |+.+|..+...                                              +++.++.+|+++|
T Consensus       685 ~Q~p~Lfng-TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlL  763 (1622)
T PLN03130        685 PQVSWIFNA-TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYI  763 (1622)
T ss_pred             cCccccCCC-CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            999988875 56655443110                                              0122589999999


Q ss_pred             EcCccC-h-----HHHH-HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF-F-----EDLY-EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~-~-----~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++ .     ..++ +.+....  .++|+|++||+++.+           ..||+|++|++ ++...|+.+++
T Consensus       764 LDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~~l-----------~~aD~Ii~L~~G~i~e~Gt~~eL  826 (1622)
T PLN03130        764 FDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLHFL-----------SQVDRIILVHEGMIKEEGTYEEL  826 (1622)
T ss_pred             ECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHhHH-----------HhCCEEEEEeCCEEEEeCCHHHH
Confidence            999988 2     2343 3444443  479999999999876           77999999999 99988987654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.82  E-value=3.3e-20  Score=192.13  Aligned_cols=150  Identities=17%  Similarity=0.168  Sum_probs=110.2

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .++++|++++|       |+|+||++++|++++|+||||||||||+ ++|.|+.  ..|. +.. .       +..+|++
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl-~~l~g~~~~~~G~-i~~-~-------g~i~yv~  705 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGH-VHM-K-------GSVAYVP  705 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCccCCcE-EEE-C-------CEEEEEc
Confidence            79999999988       8899999999999999999999999999 9999973  2342 221 1       1247888


Q ss_pred             ccCceecceecCcchhHHH----------------------------------------------hhchhhhccCcEEEE
Q 026304           81 HDGAKLPCWALPELTSFRQ----------------------------------------------KLGDDAYAKLDVIGI  114 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~l~~~p~lllL  114 (240)
                      |++.+++ .|+.+|..+..                                              .+++.++.+|++++|
T Consensus       706 Q~~~l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illL  784 (1522)
T TIGR00957       706 QQAWIQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLF  784 (1522)
T ss_pred             CCccccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            8876654 24444332200                                              001225899999999


Q ss_pred             cCccC------hHHHHHHHHHHH-hcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAA-DHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~-~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      ...+++.+.+.. ...++|+|++||+++.+          . .||+|++|++ ++...|+++++
T Consensus       785 DEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l----------~-~~D~ii~l~~G~i~~~g~~~~l  848 (1522)
T TIGR00957       785 DDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYL----------P-QVDVIIVMSGGKISEMGSYQEL  848 (1522)
T ss_pred             cCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhh----------h-hCCEEEEecCCeEEeeCCHHHH
Confidence            99988      235666665321 11478999999999987          4 5999999999 88888876543

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.81  E-value=6.4e-20  Score=145.88  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=106.7

Q ss_pred             ceEEEcceeEee------------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEe-----------
Q 026304            9 AAVTTNQVNSGR------------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAM-----------   64 (240)
Q Consensus         9 ~~l~~~~ls~~~------------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~-----------   64 (240)
                      ..|.++|++|+|            ++++||+++.||.+++-||+|||||||| |++.+- ..++..+..           
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStll-r~LYaNY~~d~G~I~v~H~g~~vdl~~   81 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLL-RSLYANYLPDEGQILVRHEGEWVDLVT   81 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHH-HHHHhccCCCCceEEEEeCcchhhhhc
Confidence            368999999998            7899999999999999999999999999 999884 233222211           


Q ss_pred             eccch--hcccCCCeEEEccCceecceecCcchh-------------------HHHhh---------------ch-----
Q 026304           65 IKSSK--DTRYAIDSVVTHDGAKLPCWALPELTS-------------------FRQKL---------------GD-----  103 (240)
Q Consensus        65 ~~~~~--~~~~~~~~~v~q~~~~~~~~~~~~~~~-------------------~~~~~---------------~~-----  103 (240)
                      ..+..  ..|....|||+|.-...|..+..+...                   +..++               +|     
T Consensus        82 a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV  161 (235)
T COG4778          82 AEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV  161 (235)
T ss_pred             cChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence            11111  223344588888544444332221110                   01110               11     


Q ss_pred             ----hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          104 ----DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       104 ----~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                          -++.+.++|+|||||+      +.-++++|.+.+. .|..++=+=||-+..          ...|||++.+..
T Consensus       162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHDeevr----------e~vadR~~~~~~  227 (235)
T COG4778         162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHDEEVR----------EAVADRLLDVSA  227 (235)
T ss_pred             hhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeeccHHHH----------HHHhhheeeccc
Confidence                2578999999999977      4568899998876 799999999999888          899999998764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=2.8e-20  Score=149.88  Aligned_cols=134  Identities=20%  Similarity=0.097  Sum_probs=96.6

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +++.+|++...     +.++||++.+||++.|.||||||||||| |+|+|+.        ++|..+...+...  + ...
T Consensus         2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLL-RilaGLl~p~~G~v~~~~~~i~~~~~~~--~-~~l   77 (209)
T COG4133           2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLL-RILAGLLRPDAGEVYWQGEPIQNVRESY--H-QAL   77 (209)
T ss_pred             cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHH-HHHHcccCCCCCeEEecCCCCccchhhH--H-HHH
Confidence            67888898876     8999999999999999999999999999 9999982        2222222211100  0 112


Q ss_pred             eEEEccCceecceecCcchhHHHhhch---------------------------------------hhhccCcEEEEcCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKLGD---------------------------------------DAYAKLDVIGIDEA  117 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~l~~~p~lllLDEP  117 (240)
                      -|+-+.+.+-+.+|+.||+.|...+.+                                       ..+..+++.|||||
T Consensus        78 ~yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP  157 (209)
T COG4133          78 LYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP  157 (209)
T ss_pred             HHhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence            355566677788899998888765311                                       13789999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ++      ...+-.++..-+. .|-.||.+||..-..
T Consensus       158 ~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~~  193 (209)
T COG4133         158 FTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLPI  193 (209)
T ss_pred             ccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccCC
Confidence            77      2245556666665 688999999987544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.81  E-value=5.9e-20  Score=189.87  Aligned_cols=147  Identities=18%  Similarity=0.191  Sum_probs=107.0

Q ss_pred             EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCce
Q 026304           11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAK   85 (240)
Q Consensus        11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~   85 (240)
                      ++++++++.+   |+|+||+|++|++++|+||||||||||| ++|.|+.  ..|. +.. .       +..+|++|++.+
T Consensus       429 ~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl-~~l~G~~~~~~G~-i~~-~-------g~iayv~Q~~~l  498 (1490)
T TIGR01271       429 LFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLL-MMIMGELEPSEGK-IKH-S-------GRISFSPQTSWI  498 (1490)
T ss_pred             ccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCce-EEE-C-------CEEEEEeCCCcc
Confidence            4555665543   8999999999999999999999999999 9999973  2332 221 1       124788888877


Q ss_pred             ecceecCcchhHHH------------------h----------------------------hchhhhccCcEEEEcCccC
Q 026304           86 LPCWALPELTSFRQ------------------K----------------------------LGDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        86 ~~~~~~~~~~~~~~------------------~----------------------------~~~~l~~~p~lllLDEP~~  119 (240)
                      ++. |+.+|..+..                  .                            ++..++.+|+++|||||++
T Consensus       499 ~~~-Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s  577 (1490)
T TIGR01271       499 MPG-TIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFT  577 (1490)
T ss_pred             CCc-cHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            764 5555443210                  0                            0112589999999999988


Q ss_pred             ------hHHHHHH-HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          120 ------FEDLYEF-CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       120 ------~~~i~~~-l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                            ...+++. +.++.  .++|+|++||+++.+          . .||+|++|++ ++...|+++.+
T Consensus       578 aLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~~----------~-~ad~ii~l~~g~i~~~g~~~~l  634 (1490)
T TIGR01271       578 HLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEHL----------K-KADKILLLHEGVCYFYGTFSEL  634 (1490)
T ss_pred             cCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHHH----------H-hCCEEEEEECCEEEEEcCHHHH
Confidence                  3356653 45554  489999999999987          4 5999999999 88888876543

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=2.7e-19  Score=179.69  Aligned_cols=156  Identities=17%  Similarity=0.048  Sum_probs=121.1

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++|++.+|       |++|||+|++||.+||+|..|||||||+ .++-++        .++|.++..+.-+. .|.+
T Consensus      1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~-~aLFRl~e~~~G~I~IDgvdI~~igL~d-LRsr 1215 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLI-LALFRLVEPAEGEILIDGVDISKIGLHD-LRSR 1215 (1381)
T ss_pred             eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHH-HHHHHhcCccCCeEEEcCeecccccHHH-HHhc
Confidence            69999999999       9999999999999999999999999998 888775        46788887765433 3333


Q ss_pred             CCeEEEccCceecceecCcchhHHHh----------------------------------------------hchhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~  108 (240)
                       .+++||++.+|.. |+..|++-...                                              +++.++++
T Consensus      1216 -lsIIPQdPvLFsG-TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1216 -LSIIPQDPVLFSG-TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred             -CeeeCCCCceecC-ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence             4899999999876 34433221100                                              12336899


Q ss_pred             CcEEEEcCccC-----hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF-----FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~-----~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      .+||+|||+|+     .+ .+.+.|++.-  .+.||+.+.|.++-+           --||||++|++ ++...++|..+
T Consensus      1294 skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~TV-----------md~DrVlVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNTV-----------MDSDRVLVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred             CCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccchh-----------hhcCeEEEeeCCeEeecCChHHH
Confidence            99999999998     22 2444555443  378999999999998           45999999999 99999999865


Q ss_pred             e
Q 026304          182 T  182 (240)
Q Consensus       182 ~  182 (240)
                      .
T Consensus      1361 l 1361 (1381)
T KOG0054|consen 1361 L 1361 (1381)
T ss_pred             H
Confidence            4

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.79  E-value=2.5e-19  Score=154.15  Aligned_cols=58  Identities=26%  Similarity=0.261  Sum_probs=49.2

Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc-eeecc
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA-RCELC  175 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~-~~~~~  175 (240)
                      |++++||||++      ...+.+.|+++.+ .|.|||++||+++++          . .||+++.|      ++ +++++
T Consensus       191 p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~i----------~-~aD~ii~Lgp~~g~~~G~iv~~  258 (261)
T cd03271         191 KTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDVI----------K-CADWIIDLGPEGGDGGGQVVAS  258 (261)
T ss_pred             CcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------H-hCCEEEEecCCcCCCCCEEEEe
Confidence            79999999988      3578888998886 689999999999988          4 69999999      56 77777


Q ss_pred             CCc
Q 026304          176 GKR  178 (240)
Q Consensus       176 g~~  178 (240)
                      |++
T Consensus       259 Gt~  261 (261)
T cd03271         259 GTP  261 (261)
T ss_pred             CCC
Confidence            653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.78  E-value=9.3e-19  Score=145.01  Aligned_cols=134  Identities=15%  Similarity=0.108  Sum_probs=85.9

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCc---eEEeeccc--hhcccCCCeEEEccCceecce
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGR---NIAMIKSS--KDTRYAIDSVVTHDGAKLPCW   89 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~---~i~~~~~~--~~~~~~~~~~v~q~~~~~~~~   89 (240)
                      +++++++.+| +++|+||||||||||+ ++|+|+.       +.+.   ++......  ........+++||++..+...
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll-~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~   91 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNII-DAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI   91 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHH-HHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE
Confidence            7899999999 9999999999999999 9998762       1111   11111110  001112348899976543111


Q ss_pred             -ecCcchhHHH----------h----------hchhhh----ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEE
Q 026304           90 -ALPELTSFRQ----------K----------LGDDAY----AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTV  138 (240)
Q Consensus        90 -~~~~~~~~~~----------~----------~~~~l~----~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tv  138 (240)
                       ..........          .          ++..++    .+|++++||||++      ...+.+.|+++.+  +.+|
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~ti  169 (197)
T cd03278          92 ISQGDVSEIIEAPGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQF  169 (197)
T ss_pred             EehhhHHHHHhCCCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEE
Confidence             0000000000          0          011122    4669999999987      3468888888754  6899


Q ss_pred             EEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          139 VVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       139 i~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |++||+++++           .+||+++.+..
T Consensus       170 IiitH~~~~~-----------~~~d~v~~~~~  190 (197)
T cd03278         170 IVITHRKGTM-----------EAADRLYGVTM  190 (197)
T ss_pred             EEEECCHHHH-----------hhcceEEEEEe
Confidence            9999999876           58999998875

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.78  E-value=8.5e-20  Score=161.37  Aligned_cols=151  Identities=20%  Similarity=0.191  Sum_probs=105.2

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++|+.+.|      +.+||++|++||++.|+|.||||||||+ +.+.|+        .++|+++..-... +.| +.
T Consensus       322 ~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~-~LLtGL~~PqsG~I~ldg~pV~~e~le-dYR-~L  398 (546)
T COG4615         322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLA-MLLTGLYQPQSGEILLDGKPVSAEQLE-DYR-KL  398 (546)
T ss_pred             ceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHH-HHHhcccCCCCCceeECCccCCCCCHH-HHH-HH
Confidence            59999999999      7799999999999999999999999999 999997        3456655432221 111 12


Q ss_pred             CeEEEccCceecceecCcc------hhH-HHhh--------------------c--------hhhhccCcEEEEcC----
Q 026304           76 DSVVTHDGAKLPCWALPEL------TSF-RQKL--------------------G--------DDAYAKLDVIGIDE----  116 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~------~~~-~~~~--------------------~--------~~l~~~p~lllLDE----  116 (240)
                      ..-+|.|..+|+.+--.++      ... ..++                    |        -.++.+.+++++||    
T Consensus       399 fSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAAD  478 (546)
T COG4615         399 FSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAAD  478 (546)
T ss_pred             HHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhcc
Confidence            2334555555544322221      110 0000                    0        11478999999999    


Q ss_pred             --ccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          117 --AQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       117 --P~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                        |.|++.+.+.+.-+.++.|+||+.+|||-..-           ..|||++.+.+ +|..
T Consensus       479 QDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF-----------~~ADrll~~~~G~~~e  528 (546)
T COG4615         479 QDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYF-----------IHADRLLEMRNGQLSE  528 (546)
T ss_pred             CChHHHHHHHHHHhHHHHHhCCeEEEEecCchhh-----------hhHHHHHHHhcCceee
Confidence              45566777666555455899999999997664           78999999999 7764

>PTZ00243 ABC transporter; Provisional

Probab=99.77  E-value=7.8e-19  Score=181.98  Aligned_cols=138  Identities=28%  Similarity=0.291  Sum_probs=99.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR   98 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~   98 (240)
                      |+|+||+|++|++++|+||||||||||| ++|.|+.  ..|. +..       + +..+|++|++.+++ .|+.+|..+.
T Consensus       676 L~~isl~i~~G~~~~IiG~nGsGKSTLL-~~i~G~~~~~~G~-i~~-------~-~~i~yv~Q~~~l~~-~Tv~enI~~~  744 (1560)
T PTZ00243        676 LRDVSVSVPRGKLTVVLGATGSGKSTLL-QSLLSQFEISEGR-VWA-------E-RSIAYVPQQAWIMN-ATVRGNILFF  744 (1560)
T ss_pred             EeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcE-EEE-------C-CeEEEEeCCCccCC-CcHHHHHHcC
Confidence            8999999999999999999999999999 9999973  2343 221       1 23589999887664 3555443221


Q ss_pred             H---------------------hh-------------------------chhhhccCcEEEEcCccC-h-----HHHHHH
Q 026304           99 Q---------------------KL-------------------------GDDAYAKLDVIGIDEAQF-F-----EDLYEF  126 (240)
Q Consensus        99 ~---------------------~~-------------------------~~~l~~~p~lllLDEP~~-~-----~~i~~~  126 (240)
                      .                     .+                         ...++.+|+++|||||++ .     ..+++.
T Consensus       745 ~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~  824 (1560)
T PTZ00243        745 DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEE  824 (1560)
T ss_pred             ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence            0                     00                         112589999999999988 2     234443


Q ss_pred             HHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          127 CCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       127 l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +..... .|+|+|++||+++.+           ..||+|++|++ ++...|+.+.+
T Consensus       825 ~~~~~~-~~~TvIlvTH~~~~~-----------~~ad~ii~l~~G~i~~~G~~~~l  868 (1560)
T PTZ00243        825 CFLGAL-AGKTRVLATHQVHVV-----------PRADYVVALGDGRVEFSGSSADF  868 (1560)
T ss_pred             HHHHhh-CCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEEecCHHHH
Confidence            222122 489999999999987           57999999999 88888887553

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.77  E-value=1.8e-18  Score=158.92  Aligned_cols=155  Identities=17%  Similarity=0.176  Sum_probs=120.5

Q ss_pred             CCceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304            7 KPAAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      .++.+++++++..- ++|+||++.+||+++|.|-.|||+|-|+ ++|.|.        .++|+++...++....+.+ .+
T Consensus       260 ~~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~-~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G-i~  337 (500)
T COG1129         260 GEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELA-RALFGARPASSGEILLDGKPVRIRSPRDAIKAG-IA  337 (500)
T ss_pred             CCcEEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHH-HHHhCCCcCCCceEEECCEEccCCCHHHHHHcC-CE
Confidence            35689999999875 8999999999999999999999999999 999996        4567777665554444444 36


Q ss_pred             EEEccC---ceecceecCcchhHHHh------------------------------------------------hchhhh
Q 026304           78 VVTHDG---AKLPCWALPELTSFRQK------------------------------------------------LGDDAY  106 (240)
Q Consensus        78 ~v~q~~---~~~~~~~~~~~~~~~~~------------------------------------------------~~~~l~  106 (240)
                      |++.+.   .++..+++.+|..+...                                                ++..+.
T Consensus       338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~  417 (500)
T COG1129         338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLA  417 (500)
T ss_pred             eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHh
Confidence            777543   23444444443322200                                                012258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      .+|++|||||||-      ..+++++++++++ +|++||++|-+++++          ..+||||++|++ ++..
T Consensus       418 ~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSElpEl----------l~~~DRIlVm~~Gri~~  481 (500)
T COG1129         418 TDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSELPEL----------LGLSDRILVMREGRIVG  481 (500)
T ss_pred             cCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCChHHH----------HhhCCEEEEEECCEEEE
Confidence            8999999999987      5689999999998 799999999999999          999999999999 7764

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.76  E-value=4.3e-18  Score=142.52  Aligned_cols=147  Identities=18%  Similarity=0.100  Sum_probs=91.4

Q ss_pred             eEEEcceeEee--ecCCCCccc-CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec----cch---hcccCCCeEE
Q 026304           10 AVTTNQVNSGR--DRVGLPHRN-SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK----SSK---DTRYAIDSVV   79 (240)
Q Consensus        10 ~l~~~~ls~~~--l~~vsl~i~-~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~----~~~---~~~~~~~~~v   79 (240)
                      .|+++|+. +|  -.+++|+.. +|++++|+||||||||||+ ++|.+..+ |.......    ...   .......+++
T Consensus         5 ~i~l~nf~-~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll-~~i~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (213)
T cd03279           5 KLELKNFG-PFREEQVIDFTGLDNNGLFLICGPTGAGKSTIL-DAITYALY-GKTPRYGRQENLRSVFAPGEDTAEVSFT   81 (213)
T ss_pred             EEEEECCc-CcCCceEEeCCCCCccCEEEEECCCCCCHHHHH-HHheeeEe-cCccccccchhHHHHhcCCCccEEEEEE
Confidence            57888888 65  456777654 5899999999999999999 99986322 11111000    000   0001112556


Q ss_pred             EccCcee------cceecCcchh--------HHHh-----------------hchhhh----------ccCcEEEEcCcc
Q 026304           80 THDGAKL------PCWALPELTS--------FRQK-----------------LGDDAY----------AKLDVIGIDEAQ  118 (240)
Q Consensus        80 ~q~~~~~------~~~~~~~~~~--------~~~~-----------------~~~~l~----------~~p~lllLDEP~  118 (240)
                      +|.....      ..++..+...        +...                 +...++          .+|++++||||+
T Consensus        82 f~~~~~~~~~~r~~gl~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~  161 (213)
T cd03279          82 FQLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGF  161 (213)
T ss_pred             EEECCeEEEEEEecCCCHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCc
Confidence            6553221      0111000000        0000                 011133          267999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +      ...+.+.+.++++ .+.|||++|||++++          ..+||+++++++
T Consensus       162 ~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~~~----------~~~~~~i~~~~~  208 (213)
T cd03279         162 GTLDPEALEAVATALELIRT-ENRMVGVISHVEELK----------ERIPQRLEVIKT  208 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchHHH----------HhhCcEEEEEec
Confidence            7      3468888888876 589999999999999          899999999875

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=8.7e-19  Score=156.03  Aligned_cols=157  Identities=18%  Similarity=0.087  Sum_probs=118.2

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .+.+++++|.|      |+++||++++|+.++++||+|+||||++ +++.++        .++|+++....+...  ++.
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~-rllfRFyD~~sG~I~id~qdir~vtq~sl--R~a  338 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTIL-RLLFRFYDVNSGSITIDGQDIRDVTQQSL--RRA  338 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHH-HHHHHHhCCcCceEEEcchhHHHhHHHHH--HHH
Confidence            47889999999      9999999999999999999999999999 999775        356666654433322  234


Q ss_pred             CeEEEccCceecceecCcc---------hhH------------HHhh-------------------------chhhhccC
Q 026304           76 DSVVTHDGAKLPCWALPEL---------TSF------------RQKL-------------------------GDDAYAKL  109 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~---------~~~------------~~~~-------------------------~~~l~~~p  109 (240)
                      +|+|||+..+|.+.-..++         .+.            ...+                         +..++.+|
T Consensus       339 Ig~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p  418 (497)
T COG5265         339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP  418 (497)
T ss_pred             hCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence            6899999888765322110         000            0000                         12258999


Q ss_pred             cEEEEcCccCh------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          110 DVIGIDEAQFF------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       110 ~lllLDEP~~~------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      ++|++||.|+.      .++...|++..  .|.|-+++.|.++-+           --||.|++|++ +++..|+.+++.
T Consensus       419 ~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlsti-----------~~adeiivl~~g~i~erg~h~~ll  485 (497)
T COG5265         419 PILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLSTI-----------IDADEIIVLDNGRIVERGTHEELL  485 (497)
T ss_pred             CEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhhc-----------cCCceEEEeeCCEEEecCcHHHHH
Confidence            99999999882      25777777776  488999999999987           56999999999 999999877654

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.76  E-value=3.1e-19  Score=161.96  Aligned_cols=158  Identities=16%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceE---------EeeccchhcccCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNI---------AMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i---------~~~~~~~~~~~~~   75 (240)
                      -|.+.+++..|     |.+-++++..|..|||+|+||+|||||| |+|+.-.+.+-.+         .........-...
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLL-Raia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~  158 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLL-RAIANGQVSGFHVEQEVRGDDTEALQSVLESDTER  158 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHH-HHHHhcCcCccCchhheeccchHHHhhhhhccHHH
Confidence            47778888888     8999999999999999999999999999 9998743222111         0000000000000


Q ss_pred             CeEEEccC-------------------------ceecceecCcchhHHHhhchhhhccCcEEEEcCccChH--HHHHHHH
Q 026304           76 DSVVTHDG-------------------------AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFE--DLYEFCC  128 (240)
Q Consensus        76 ~~~v~q~~-------------------------~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~--~i~~~l~  128 (240)
                      ..++.++.                         +..+.-++.+.+.+...++.++..+||+|||||||+..  .-+.+|.
T Consensus       159 ~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe  238 (582)
T KOG0062|consen  159 LDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLE  238 (582)
T ss_pred             HHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHH
Confidence            01111111                         11222234444555555667789999999999999943  2345666


Q ss_pred             HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCc
Q 026304          129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKR  178 (240)
Q Consensus       129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~  178 (240)
                      ......+.|+|+||||-.|+          -..|..|+.+++ ++. +-|.-
T Consensus       239 ~yL~t~~~T~liVSHDr~FL----------n~V~tdIIH~~~~kL~~YkGN~  280 (582)
T KOG0062|consen  239 NYLQTWKITSLIVSHDRNFL----------NTVCTDIIHLENLKLDYYKGNY  280 (582)
T ss_pred             HHHhhCCceEEEEeccHHHH----------HHHHHHHHHHhhhhhhhhcCcH
Confidence            66555789999999999999          899999999998 765 34443

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=2e-18  Score=170.77  Aligned_cols=151  Identities=19%  Similarity=0.153  Sum_probs=117.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc-----eEEeeccchhcccCCCeEEEccCceecceecCcch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR-----NIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELT   95 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~-----~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~   95 (240)
                      |+||+--+.||-+++|+|+||||||||| ++|+|-...|.     .+...+.....-.+..||+.|.+.-.+..||+|.+
T Consensus       807 L~~V~G~~kPG~LTALMG~SGAGKTTLL-dvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL  885 (1391)
T KOG0065|consen  807 LNNVSGAFKPGVLTALMGESGAGKTTLL-DVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESL  885 (1391)
T ss_pred             hhcCceEecCCceeehhcCCCCchHHHH-HHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHH
Confidence            8999999999999999999999999999 99998522221     12222222122233469999998888999999877


Q ss_pred             hHHHhhc-------------------------------------------------hhhhccC-cEEEEcCccC----h-
Q 026304           96 SFRQKLG-------------------------------------------------DDAYAKL-DVIGIDEAQF----F-  120 (240)
Q Consensus        96 ~~~~~~~-------------------------------------------------~~l~~~p-~lllLDEP~~----~-  120 (240)
                      .+.+.+.                                                 -+++.+| .+|+|||||+    + 
T Consensus       886 ~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqa  965 (1391)
T KOG0065|consen  886 RFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQA  965 (1391)
T ss_pred             HHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHH
Confidence            7654431                                                 1258899 8999999999    2 


Q ss_pred             -HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccCCcceee
Q 026304          121 -EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCGKRAFFT  182 (240)
Q Consensus       121 -~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g~~~~~~  182 (240)
                       -.+++.++++++ .|.||+|+-|.++..         |.+..|+++.|+.  ++++.|+..+-.
T Consensus       966 A~~i~~~lrkla~-tGqtIlCTIHQPS~~---------ife~FD~LLLLkrGGqtVY~G~lG~~s 1020 (1391)
T KOG0065|consen  966 AAIVMRFLRKLAD-TGQTILCTIHQPSID---------IFEAFDELLLLKRGGQTVYFGPLGENS 1020 (1391)
T ss_pred             HHHHHHHHHHHHh-cCCeEEEEecCCcHH---------HHHHHhHHHHHhcCCeEEEecCccccc
Confidence             269999999998 899999999998754         5888999999998  899999876543

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.75  E-value=7.9e-18  Score=140.17  Aligned_cols=146  Identities=16%  Similarity=0.143  Sum_probs=88.8

Q ss_pred             EEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc----CchhCC-ceEEeeccch--hcccCCCeEEEccC
Q 026304           11 VTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR----SESDNG-RNIAMIKSSK--DTRYAIDSVVTHDG   83 (240)
Q Consensus        11 l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~----gl~~~g-~~i~~~~~~~--~~~~~~~~~v~q~~   83 (240)
                      |+++|.. +|.+..++++.+| +++|+||||||||||+ ++|.    |....+ ..+.......  .......++++|+.
T Consensus         4 l~l~nfr-~~~~~~~l~~~~g-~~~i~G~NGsGKTTLl-~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~   80 (204)
T cd03240           4 LSIRNIR-SFHERSEIEFFSP-LTLIVGQNGAGKTTII-EALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENA   80 (204)
T ss_pred             EEEECcc-cccCceEEecCCC-eEEEECCCCCCHHHHH-HHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence            4555543 2234456677788 9999999999999999 9984    543221 1110000000  00111135666655


Q ss_pred             -----ceecceecCcchhHH-----------------------------HhhchhhhccCcEEEEcCccC------hH-H
Q 026304           84 -----AKLPCWALPELTSFR-----------------------------QKLGDDAYAKLDVIGIDEAQF------FE-D  122 (240)
Q Consensus        84 -----~~~~~~~~~~~~~~~-----------------------------~~~~~~l~~~p~lllLDEP~~------~~-~  122 (240)
                           .....+++.++..+.                             ..+...++.+|+++++|||++      .. .
T Consensus        81 ~~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~  160 (204)
T cd03240          81 NGKKYTITRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES  160 (204)
T ss_pred             CCCEEEEEEEhhHhhceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence                 122222333322110                             001223467999999999987      35 6


Q ss_pred             HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          123 LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       123 i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +.+++.++.++.+.+||++||+++.+           ..||+++.|..
T Consensus       161 l~~~l~~~~~~~~~~iiiitH~~~~~-----------~~~d~i~~l~~  197 (204)
T cd03240         161 LAEIIEERKSQKNFQLIVITHDEELV-----------DAADHIYRVEK  197 (204)
T ss_pred             HHHHHHHHHhccCCEEEEEEecHHHH-----------hhCCEEEEEee
Confidence            88888888763388999999998876           57999998865

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.75  E-value=3.6e-18  Score=140.28  Aligned_cols=151  Identities=12%  Similarity=0.150  Sum_probs=109.8

Q ss_pred             ceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc------------hhCCceEEeecc
Q 026304            9 AAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE------------SDNGRNIAMIKS   67 (240)
Q Consensus         9 ~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl------------~~~g~~i~~~~~   67 (240)
                      +.+.++|++..+         ++++|+++.+||+-+++|.+|||||-.. +.|+|.            .++..++..+++
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiA-K~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIA-KAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHH-HHHhcccccceEEEhhhcccccchhhcCCh
Confidence            357788888876         7899999999999999999999999999 999996            344455555555


Q ss_pred             chhccc--CCCeEEEccCce---------------ecceecCcch------------hHHHhh-----------------
Q 026304           68 SKDTRY--AIDSVVTHDGAK---------------LPCWALPELT------------SFRQKL-----------------  101 (240)
Q Consensus        68 ~~~~~~--~~~~~v~q~~~~---------------~~~~~~~~~~------------~~~~~~-----------------  101 (240)
                      ..+++.  ....++||++..               .+.+|..+..            .+..+.                 
T Consensus        81 r~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT  160 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT  160 (330)
T ss_pred             HHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence            433221  112567776531               2223332211            111111                 


Q ss_pred             ---------chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee
Q 026304          102 ---------GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT  166 (240)
Q Consensus       102 ---------~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~  166 (240)
                               +-.++.+|++|+.||||+      +.+++.+|.++.+..|+||++++||+..+          .++||+|-
T Consensus       161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~i----------s~W~d~i~  230 (330)
T COG4170         161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMI----------SQWADKIN  230 (330)
T ss_pred             cCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHH----------HHHhhheE
Confidence                     011478999999999988      45899999999887899999999999999          99999999


Q ss_pred             eecc
Q 026304          167 KLTA  170 (240)
Q Consensus       167 ~l~~  170 (240)
                      +|.-
T Consensus       231 VlYC  234 (330)
T COG4170         231 VLYC  234 (330)
T ss_pred             EEEe
Confidence            9864

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.73  E-value=2.6e-17  Score=136.59  Aligned_cols=113  Identities=12%  Similarity=-0.008  Sum_probs=75.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF   97 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~   97 (240)
                      .++++++  .|++++|+||||||||||+ |+|+|..   ..|..+...           .+++|...++..+++.++...
T Consensus        17 ~n~i~l~--~g~~~~ltGpNg~GKSTll-r~i~~~~~l~~~G~~v~a~-----------~~~~q~~~l~~~~~~~d~l~~   82 (199)
T cd03283          17 ANDIDME--KKNGILITGSNMSGKSTFL-RTIGVNVILAQAGAPVCAS-----------SFELPPVKIFTSIRVSDDLRD   82 (199)
T ss_pred             cceEEEc--CCcEEEEECCCCCChHHHH-HHHHHHHHHHHcCCEEecC-----------ccCcccceEEEeccchhcccc
Confidence            4566555  4799999999999999999 9999853   366654321           133444455666665554322


Q ss_pred             HH--------hhchh--hhc--cCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhh
Q 026304           98 RQ--------KLGDD--AYA--KLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        98 ~~--------~~~~~--l~~--~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ..        ++...  .+.  +|+++++|||+.      ...+. .+++++.+ .+.++|++||+++.+
T Consensus        83 ~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~  151 (199)
T cd03283          83 GISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELA  151 (199)
T ss_pred             ccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHH
Confidence            11        11111  233  899999999966      22343 46777765 689999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.72  E-value=1.1e-18  Score=135.60  Aligned_cols=96  Identities=24%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALP   92 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~   92 (240)
                      |+++||++++|++++|+||||||||||+ ++|+|..        ++|.++....  ........++++|+..+++.+++.
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl-~~l~g~~~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~tv~   77 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLL-KALAGLLPPDSGSILINGKDISDID--IEELRRRIGYVPQDPQLFPGLTVR   77 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHH-HHHTTSSHESEEEEEETTEEGTTSH--HHHHHHTEEEEESSHCHHTTSBHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccce-eeecccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence            6899999999999999999999999999 9999973        2333332211  111222358999987777777665


Q ss_pred             cchh------HHHh---------------------------hchhhhccCcEEEEcCccC
Q 026304           93 ELTS------FRQK---------------------------LGDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        93 ~~~~------~~~~---------------------------~~~~l~~~p~lllLDEP~~  119 (240)
                      ++..      +...                           +...++.+|++|+||||++
T Consensus        78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4421      0000                           1223689999999999985

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.72  E-value=8.1e-18  Score=153.63  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=101.4

Q ss_pred             CCCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceE-------Eeeccchh
Q 026304            6 LKPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNI-------AMIKSSKD   70 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i-------~~~~~~~~   70 (240)
                      .+++.+.++|++|+|      +++++|-+..++.++++||||+|||||| +++.|..  ..|.-.       ..+.++..
T Consensus       385 ~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLl-Kl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~  463 (614)
T KOG0927|consen  385 IPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLL-KLITGDLQPTIGMVSRHSHNKLPRYNQHLA  463 (614)
T ss_pred             CCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhH-HHHhhccccccccccccccccchhhhhhhH
Confidence            456789999999999      7899999999999999999999999999 9999962  222211       11111000


Q ss_pred             cccCCCeEEEccCceeccee-cCcchhH---HHh------------------------hchhhhccCcEEEEcCccC-hH
Q 026304           71 TRYAIDSVVTHDGAKLPCWA-LPELTSF---RQK------------------------LGDDAYAKLDVIGIDEAQF-FE  121 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~-~~~~~~~---~~~------------------------~~~~l~~~p~lllLDEP~~-~~  121 (240)
                      .......  +-.....+.+. ..+...+   ..+                        +....+..|.+|+|||||+ .+
T Consensus       464 e~ldl~~--s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD  541 (614)
T KOG0927|consen  464 EQLDLDK--SSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD  541 (614)
T ss_pred             hhcCcch--hHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC
Confidence            0000000  00000000010 0000011   111                        1222589999999999999 33


Q ss_pred             -HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc--eeeccCCc
Q 026304          122 -DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA--RCELCGKR  178 (240)
Q Consensus       122 -~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~--~~~~~g~~  178 (240)
                       +-++.+.+..++..-+||++|||..++          ..+++++++..+  ...+.|+.
T Consensus       542 i~tid~laeaiNe~~Ggvv~vSHDfrlI----------~qVaeEi~~c~~~~~~~~~G~i  591 (614)
T KOG0927|consen  542 IETIDALAEAINEFPGGVVLVSHDFRLI----------SQVAEEIWVCENGTVTKWDGDI  591 (614)
T ss_pred             chhHHHHHHHHhccCCceeeeechhhHH----------HHHHHHhHhhccCceeecCccH
Confidence             455666666555677899999999999          999999999988  33455554

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.72  E-value=1.1e-17  Score=152.65  Aligned_cols=161  Identities=16%  Similarity=0.190  Sum_probs=100.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC---CceEEeec----cchh-------
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN---GRNIAMIK----SSKD-------   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~---g~~i~~~~----~~~~-------   70 (240)
                      -+.+.++|+.|     ++|++|++.+|+.+||+|||||||||+| ++|.|-...   ..++..+.    ++..       
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L-~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~  153 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFL-RAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVV  153 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHH-HHHhcCCCCCCcccchhhhcccCCCchHHHHHHHh
Confidence            58899999998     8999999999999999999999999999 999984110   00000000    0000       


Q ss_pred             -------cccC--CCeEEEc-cC-c------eec-------------------------------ceecCcchhHHHhhc
Q 026304           71 -------TRYA--IDSVVTH-DG-A------KLP-------------------------------CWALPELTSFRQKLG  102 (240)
Q Consensus        71 -------~~~~--~~~~v~q-~~-~------~~~-------------------------------~~~~~~~~~~~~~~~  102 (240)
                             .+..  ...+..+ +. .      ++.                               ...+.+...++..++
T Consensus       154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA  233 (614)
T KOG0927|consen  154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA  233 (614)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence                   0000  0000000 00 0      000                               001112222223334


Q ss_pred             hhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCC-EEEEEecChhhhhcccchHHHHHhhccceeeecc-e-eeccCC
Q 026304          103 DDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGK-TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R-CELCGK  177 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~-tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~-~~~~g~  177 (240)
                      ..+..+|++|||||||+ .+ +-...|.+...+... ++++++|+-+++          -.+|++|+.++. + +.+.|+
T Consensus       234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfl----------n~vCT~Ii~l~~kkl~~y~Gn  303 (614)
T KOG0927|consen  234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFL----------NGVCTNIIHLDNKKLIYYEGN  303 (614)
T ss_pred             HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhh----------hhHhhhhheecccceeeecCC
Confidence            55789999999999999 33 334455554433555 899999999999          899999999999 6 566676


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      -+++
T Consensus       304 ydqy  307 (614)
T KOG0927|consen  304 YDQY  307 (614)
T ss_pred             HHHH
Confidence            5543

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.71  E-value=6.6e-17  Score=134.10  Aligned_cols=136  Identities=15%  Similarity=0.055  Sum_probs=80.6

Q ss_pred             ecCCCCcccCcE-EEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceec-ceecCcc-
Q 026304           21 DRVGLPHRNSGE-IHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP-CWALPEL-   94 (240)
Q Consensus        21 l~~vsl~i~~Ge-~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~-~~~~~~~-   94 (240)
                      ..++||++.+|+ +++|+||||||||||| ++|.-..   -.|..+... ..  ..   .++..|....+. ...+.+. 
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll-~~i~~~~~~~~~G~~vp~~-~~--~~---~~~~~~~~~~lg~~~~l~~~~   89 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTL-KTLGLLTLMAQSGLPIPAA-EG--SS---LPVFENIFADIGDEQSIEQSL   89 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHH-HHHHHHHHHHHcCCCcccc-cc--cc---CcCccEEEEecCchhhhhcCc
Confidence            468999999994 8999999999999999 9987111   111111100 00  00   111112110000 0001110 


Q ss_pred             ------hhHHHhhchhhhccCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh
Q 026304           95 ------TSFRQKLGDDAYAKLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL  161 (240)
Q Consensus        95 ------~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~  161 (240)
                            ......+. ..+.+|+++++|||+.      ...+. .+++++.+ .+.++|++||+. .+          ..+
T Consensus        90 s~fs~g~~~~~~i~-~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~-~l----------~~~  156 (200)
T cd03280          90 STFSSHMKNIARIL-QHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG-EL----------KAY  156 (200)
T ss_pred             chHHHHHHHHHHHH-HhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH-HH----------HHH
Confidence                  00011111 1257999999999977      23454 46677765 689999999985 45          689


Q ss_pred             ccceeeecc-eeeccC
Q 026304          162 ADTVTKLTA-RCELCG  176 (240)
Q Consensus       162 ad~i~~l~~-~~~~~g  176 (240)
                      ||+++.|++ .+.+.+
T Consensus       157 ~d~~~~l~~g~l~~~~  172 (200)
T cd03280         157 AYKREGVENASMEFDP  172 (200)
T ss_pred             HhcCCCeEEEEEEEec
Confidence            999999988 766553

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.69  E-value=2.5e-17  Score=138.00  Aligned_cols=50  Identities=14%  Similarity=0.187  Sum_probs=41.1

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +|+++++|||++      ...+.+.++++++  +.++|++||+. .+          .++||++++|..
T Consensus       149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~-~~----------~~~~d~v~~~~~  204 (212)
T cd03274         149 PTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN-NM----------FELADRLVGIYK  204 (212)
T ss_pred             CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH-HH----------HHhCCEEEEEEe
Confidence            479999999988      4578888888753  57899999995 45          689999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.69  E-value=7.3e-17  Score=162.38  Aligned_cols=151  Identities=19%  Similarity=0.198  Sum_probs=114.4

Q ss_pred             CceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--hhCCceEEeeccchhcccCCCe
Q 026304            8 PAAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus         8 ~~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ...++++|.++++        |+||||++++|+.++|+||-|||||+|| .+|.|.  ...|. +..        .+..+
T Consensus       516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL-~AiLGEm~~~sG~-v~v--------~gsia  585 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLL-SAILGEMPKLSGS-VAV--------NGSVA  585 (1381)
T ss_pred             CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHH-HHHhcCcccccce-EEE--------cCeEE
Confidence            3479999999986        8999999999999999999999999999 999995  33442 211        11247


Q ss_pred             EEEccCceecceecCcchhHHHh----------------------------------------------hchhhhccCcE
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK----------------------------------------------LGDDAYAKLDV  111 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~l~~~p~l  111 (240)
                      |++|.+++++. |+.+|..|...                                              +++...++.|+
T Consensus       586 Yv~Q~pWI~ng-TvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI  664 (1381)
T KOG0054|consen  586 YVPQQPWIQNG-TVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI  664 (1381)
T ss_pred             EeccccHhhCC-cHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence            89998887765 56666544211                                              11225899999


Q ss_pred             EEEcCccCh------HHH-HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          112 IGIDEAQFF------EDL-YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       112 llLDEP~~~------~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      +|||.|.+.      ..+ -+.++.+.  +++|+|++||.++++           ..||.|++|++ ++...|+.+++.
T Consensus       665 YLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHql~~L-----------~~ad~Iivl~~G~I~~~Gty~el~  730 (1381)
T KOG0054|consen  665 YLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQLQFL-----------PHADQIIVLKDGKIVESGTYEELL  730 (1381)
T ss_pred             EEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCchhhh-----------hhCCEEEEecCCeEecccCHHHHH
Confidence            999999761      233 34444443  479999999999887           88999999999 999999876544

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.67  E-value=2.8e-16  Score=130.49  Aligned_cols=137  Identities=16%  Similarity=0.085  Sum_probs=79.4

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecC----cc-hh
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALP----EL-TS   96 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~----~~-~~   96 (240)
                      -..++++.+|++++|+||||||||||| ++|.+..+.++.-... +....+.   ++..|   .+..+...    +. ..
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll-~~i~~~~~~~~~g~~~-~~~~~~i---~~~dq---i~~~~~~~d~i~~~~s~   91 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYL-RSIGLAVLLAQIGCFV-PAESASI---PLVDR---IFTRIGAEDSISDGRST   91 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHH-HHHHHHHHHHHcCCCc-ccccccc---CCcCE---EEEEecCcccccCCcee
Confidence            356677778999999999999999999 9998653311100011 1111111   11111   11111111    00 01


Q ss_pred             HHH---hh--chhhhccCcEEEEcCccC------hHHHHH-HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304           97 FRQ---KL--GDDAYAKLDVIGIDEAQF------FEDLYE-FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus        97 ~~~---~~--~~~l~~~p~lllLDEP~~------~~~i~~-~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                      +..   ++  .-..+.+|+++++|||+.      ...+.. +++.+.+ .+.++|++||+.+++           ..|++
T Consensus        92 ~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~-----------~~~~~  159 (202)
T cd03243          92 FMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELA-----------DLPEQ  159 (202)
T ss_pred             HHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHH-----------HHhhc
Confidence            110   01  112357999999999966      223433 4555655 689999999998776           57777


Q ss_pred             eeeecc-eeeccCCc
Q 026304          165 VTKLTA-RCELCGKR  178 (240)
Q Consensus       165 i~~l~~-~~~~~g~~  178 (240)
                      +..+.. ++...+..
T Consensus       160 ~~~l~~~~~~~~~~~  174 (202)
T cd03243         160 VPGVKNLHMEELITT  174 (202)
T ss_pred             CCCeEEEEEEEEecC
Confidence            777776 66655543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.63  E-value=3.1e-15  Score=122.57  Aligned_cols=156  Identities=19%  Similarity=0.118  Sum_probs=102.1

Q ss_pred             CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccc--hhcc---cCC
Q 026304            8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSS--KDTR---YAI   75 (240)
Q Consensus         8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~--~~~~---~~~   75 (240)
                      ...|++.++.|+|      +-|+|++++.|....++|.||||||||| ++++|-.. .+..+......  .+..   .+.
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlL-KiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd   89 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLL-KILSGKHMVGGGVVQVLGRSAFHDTSLESSGD   89 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhH-HHhcCcccccCCeEEEcCcCccccccccccCc
Confidence            4579999999999      7799999999999999999999999999 99999522 11111111100  0000   000


Q ss_pred             CeEEE----------ccCceecceecCcch------hH--HHhh----------------ch---------hhhccCcEE
Q 026304           76 DSVVT----------HDGAKLPCWALPELT------SF--RQKL----------------GD---------DAYAKLDVI  112 (240)
Q Consensus        76 ~~~v~----------q~~~~~~~~~~~~~~------~~--~~~~----------------~~---------~l~~~p~ll  112 (240)
                      ..|+-          .+-.+..++++....      ++  ..++                .+         -+++.-++|
T Consensus        90 l~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVL  169 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVL  169 (291)
T ss_pred             eeEecccccccccccccccccccccHHHHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEE
Confidence            00110          000000011111000      00  0000                01         146777999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +|||.|.      +.++++++++-.+++|.||+.+||..+-+          ..++.+++.++. ++..
T Consensus       170 LLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGL----------e~Wpthl~yi~~Gkl~~  228 (291)
T KOG2355|consen  170 LLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGL----------ETWPTHLVYIKSGKLVD  228 (291)
T ss_pred             EeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccch----------hhcchhEEEecCCeeee
Confidence            9999977      45899999999988999999999999988          899999999998 7654

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.63  E-value=9.5e-16  Score=128.76  Aligned_cols=140  Identities=15%  Similarity=0.133  Sum_probs=86.9

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchh----
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTS----   96 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~----   96 (240)
                      .++++++..+ ++++|+|||||||||+| |.+++..+.++.-...+... .+   .+++.+   +++.++..++..    
T Consensus        21 ~n~~~l~~~~-~~~~l~Gpn~sGKstll-r~i~~~~~l~~~g~~vp~~~-~~---i~~~~~---i~~~~~~~~~ls~g~s   91 (216)
T cd03284          21 PNDTELDPER-QILLITGPNMAGKSTYL-RQVALIALLAQIGSFVPASK-AE---IGVVDR---IFTRIGASDDLAGGRS   91 (216)
T ss_pred             eeeEEecCCc-eEEEEECCCCCChHHHH-HHHHHHHHHhccCCeecccc-ce---ecceee---EeccCCchhhhccCcc
Confidence            7889999887 99999999999999999 99987655443222222111 11   133322   333333333221    


Q ss_pred             -HHH---hhchh--hhccCcEEEEcCc---cC-hH---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcc
Q 026304           97 -FRQ---KLGDD--AYAKLDVIGIDEA---QF-FE---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLAD  163 (240)
Q Consensus        97 -~~~---~~~~~--l~~~p~lllLDEP---~~-~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad  163 (240)
                       +..   .+...  .+.+|+++|||||   |+ .+   ....++..+.+..+.++|++||+.+..           .++|
T Consensus        92 ~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~-----------~l~~  160 (216)
T cd03284          92 TFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELT-----------ELEG  160 (216)
T ss_pred             hHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHH-----------HHhh
Confidence             111   11111  2469999999999   76 22   234455556552388999999997554           7888


Q ss_pred             ceeeecc-eeeccCCcce
Q 026304          164 TVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       164 ~i~~l~~-~~~~~g~~~~  180 (240)
                      ++..+++ .+...+..+.
T Consensus       161 ~~~~v~~~~~~~~~~~~~  178 (216)
T cd03284         161 KLPRVKNFHVAVKEKGGG  178 (216)
T ss_pred             cCCCeEEEEEEEEeeCCe
Confidence            8776666 5555555444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.63  E-value=8.9e-16  Score=151.72  Aligned_cols=65  Identities=23%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             hhccC---cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304          105 AYAKL---DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T  169 (240)
Q Consensus       105 l~~~p---~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~  169 (240)
                      ++.+|   ++++||||++      ...++++|+++.+ .|.|||++||+++.+           ..||+++.|      +
T Consensus       845 L~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~i-----------~~aD~ii~Lgp~~G~~  912 (943)
T PRK00349        845 LSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDVI-----------KTADWIIDLGPEGGDG  912 (943)
T ss_pred             HhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH-----------HhCCEEEEecCCcCCC
Confidence            47788   9999999987      4578889999886 699999999999987           479999999      4


Q ss_pred             c-eeeccCCccee
Q 026304          170 A-RCELCGKRAFF  181 (240)
Q Consensus       170 ~-~~~~~g~~~~~  181 (240)
                      + ++++.|+++.+
T Consensus       913 ~G~Iv~~Gt~~el  925 (943)
T PRK00349        913 GGEIVATGTPEEV  925 (943)
T ss_pred             CCEEEEeCCHHHH
Confidence            6 88888887654

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.63  E-value=9.6e-16  Score=130.42  Aligned_cols=50  Identities=14%  Similarity=0.158  Sum_probs=40.7

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +|+++++|||++      ...+++.|+++.+  +.+||++||+.+ +          ..+||++++|.-
T Consensus       180 ~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~~-~----------~~~~d~i~~l~~  235 (243)
T cd03272         180 PAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRPE-L----------LEVADKFYGVKF  235 (243)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH-H----------HhhCCEEEEEEE
Confidence            589999999988      3467888888754  788888888865 5          689999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.62  E-value=1.7e-15  Score=156.04  Aligned_cols=63  Identities=19%  Similarity=0.134  Sum_probs=54.5

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-eee
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-RCE  173 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-~~~  173 (240)
                      .+|+++|||||++      ...++++|.++++ .|.|||++||+++++           .+||++++|.      . +++
T Consensus       829 ~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~i-----------~~aDrVi~L~p~gg~~~G~iv  896 (1809)
T PRK00635        829 KKPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHVV-----------KVADYVLELGPEGGNLGGYLL  896 (1809)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH-----------HhCCEEEEEccCCCCCCCEEE
Confidence            5999999999988      4578999999986 699999999999977           6899999995      4 788


Q ss_pred             ccCCccee
Q 026304          174 LCGKRAFF  181 (240)
Q Consensus       174 ~~g~~~~~  181 (240)
                      ..|+++.+
T Consensus       897 ~~Gtpeel  904 (1809)
T PRK00635        897 ASCSPEEL  904 (1809)
T ss_pred             EeCCHHHH
Confidence            88888654

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.61  E-value=4.8e-15  Score=146.27  Aligned_cols=61  Identities=25%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc-eeec
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA-RCEL  174 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~-~~~~  174 (240)
                      +|++++||||++      ...++++|+++.+ .|.|||+++|+++++           ..||+++.|      ++ ++++
T Consensus       849 ~p~llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~i-----------~~aD~ii~Lgp~~G~~gG~iv~  916 (924)
T TIGR00630       849 GRTLYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDVI-----------KTADYIIDLGPEGGDGGGTIVA  916 (924)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH-----------HhCCEEEEecCCccCCCCEEEE
Confidence            599999999988      4578899999886 699999999999987           469999999      56 8888


Q ss_pred             cCCcce
Q 026304          175 CGKRAF  180 (240)
Q Consensus       175 ~g~~~~  180 (240)
                      +|+++.
T Consensus       917 ~G~~~~  922 (924)
T TIGR00630       917 SGTPEE  922 (924)
T ss_pred             eCCHHH
Confidence            887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.61  E-value=2e-15  Score=125.14  Aligned_cols=135  Identities=14%  Similarity=0.013  Sum_probs=79.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEe-ecc--chhcc----cCCCeEEEccCceecceecCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAM-IKS--SKDTR----YAIDSVVTHDGAKLPCWALPE   93 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~-~~~--~~~~~----~~~~~~v~q~~~~~~~~~~~~   93 (240)
                      ++++++++.+| +.+|+||||||||||+ ..|... ..|..... ...  ....+    .....+.++....++. ....
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll-~ai~~~-l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-~~~~   87 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAIL-TALTIG-LGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-PLCV   87 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHH-HHHHHH-hcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC-cCCH
Confidence            57788888887 8899999999999999 887532 11211000 000  00000    0112344544332221 0000


Q ss_pred             c--hhH---H--------------------Hhhchhh----hccCcEEEEcCccC------hHHHHHHHHHHHhc--CCC
Q 026304           94 L--TSF---R--------------------QKLGDDA----YAKLDVIGIDEAQF------FEDLYEFCCNAADH--DGK  136 (240)
Q Consensus        94 ~--~~~---~--------------------~~~~~~l----~~~p~lllLDEP~~------~~~i~~~l~~l~~~--~g~  136 (240)
                      .  ...   .                    ..++..+    +.+|++++||||++      ...+.++|.++..+  .+.
T Consensus        88 ~~~~~~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~  167 (198)
T cd03276          88 LSQDMARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQ  167 (198)
T ss_pred             HHHHHHHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcE
Confidence            0  000   0                    0011123    47999999999987      34688888887653  246


Q ss_pred             EEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          137 TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       137 tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +|+++||+++.+          ..+ |+|.+|+.
T Consensus       168 ~iii~th~~~~i----------~~~-d~v~~~~~  190 (198)
T cd03276         168 FIFITPQDISGL----------ASS-DDVKVFRM  190 (198)
T ss_pred             EEEEECCccccc----------ccc-cceeEEEe
Confidence            899999999999          665 99998874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.59  E-value=6.2e-15  Score=127.50  Aligned_cols=140  Identities=15%  Similarity=0.089  Sum_probs=87.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhh-c
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL-G  102 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-~  102 (240)
                      .-++|+||||||||||+ +.|+|+.        ++|+++.......... ...++++|.. +...+++.++......+ .
T Consensus       112 ~~~~i~g~~g~GKttl~-~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~-~~~~~~~q~~-~~~r~~v~~~~~k~~~~~~  188 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLL-RDLARILSTGISQLGLRGKKVGIVDERSEIA-GCVNGVPQHD-VGIRTDVLDGCPKAEGMMM  188 (270)
T ss_pred             eEEEEEcCCCCCHHHHH-HHHhCccCCCCceEEECCEEeecchhHHHHH-HHhccccccc-ccccccccccchHHHHHHH
Confidence            67899999999999999 9999973        4566765432111111 1224666654 34445555543222111 1


Q ss_pred             hhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc--hHHHH--Hhhccceeeecc-eeeccCC
Q 026304          103 DDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG--SVLDI--IPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~--~~~~L--~~~ad~i~~l~~-~~~~~g~  177 (240)
                      -...++|++|++|||...+.+..++..+ + .|.++|+++|+.+.. +...  ....|  ..++||+++|++ +  ..|+
T Consensus       189 ~i~~~~P~villDE~~~~e~~~~l~~~~-~-~G~~vI~ttH~~~~~-~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~  263 (270)
T TIGR02858       189 LIRSMSPDVIVVDEIGREEDVEALLEAL-H-AGVSIIATAHGRDVE-DLYKRPVFKELIENEAFERYVVLSRRK--GPGT  263 (270)
T ss_pred             HHHhCCCCEEEEeCCCcHHHHHHHHHHH-h-CCCEEEEEechhHHH-HHHhChHHHHHHhcCceEEEEEEecCC--CCCc
Confidence            1234799999999998876666666665 3 599999999986653 1110  01111  356899999987 4  4455


Q ss_pred             cc
Q 026304          178 RA  179 (240)
Q Consensus       178 ~~  179 (240)
                      +.
T Consensus       264 ~~  265 (270)
T TIGR02858       264 VE  265 (270)
T ss_pred             ee
Confidence            43

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.59  E-value=3.1e-15  Score=134.30  Aligned_cols=149  Identities=17%  Similarity=0.136  Sum_probs=91.8

Q ss_pred             CCCCCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCC
Q 026304            4 SNLKPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         4 ~~~~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~   75 (240)
                      +.+.+|.|-+.+|+|+|      +..++|-|.-...++|+||||.|||||| +++.|-.  -+|.- .     ...|.. 
T Consensus       580 ~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlL-kLL~Gkl~P~~GE~-R-----KnhrL~-  651 (807)
T KOG0066|consen  580 TKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLL-KLLIGKLDPNDGEL-R-----KNHRLR-  651 (807)
T ss_pred             CCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHH-HHHhcCCCCCcchh-h-----ccceee-
Confidence            44678899999999999      7899999999999999999999999999 9998841  11210 0     000110 


Q ss_pred             CeEEEccCc--eeccee------------------------------------cCcchhHHHhhchhhhccCcEEEEcCc
Q 026304           76 DSVVTHDGA--KLPCWA------------------------------------LPELTSFRQKLGDDAYAKLDVIGIDEA  117 (240)
Q Consensus        76 ~~~v~q~~~--~~~~~~------------------------------------~~~~~~~~~~~~~~l~~~p~lllLDEP  117 (240)
                      +|+.-|...  +....+                                    +.+....+..+....+..|++||||||
T Consensus       652 iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP  731 (807)
T KOG0066|consen  652 IGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP  731 (807)
T ss_pred             eechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC
Confidence            122111100  000000                                    000000000011123689999999999


Q ss_pred             cC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          118 QF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       118 ~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |+ .+ +-++.|.+...+....|||||||-.++          .+.--..+++.+
T Consensus       732 TNNLDIESIDALaEAIney~GgVi~VsHDeRLi----------~eT~C~LwVvE~  776 (807)
T KOG0066|consen  732 TNNLDIESIDALAEAINEYNGGVIMVSHDERLI----------VETDCNLWVVEN  776 (807)
T ss_pred             CCCcchhhHHHHHHHHHhccCcEEEEeccccee----------eecCceEEEEcc
Confidence            98 22 445555555555677899999998887          554445666655

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.58  E-value=1.1e-14  Score=132.13  Aligned_cols=163  Identities=17%  Similarity=0.140  Sum_probs=123.3

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceE-Eeeccchhc
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNI-AMIKSSKDT   71 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i-~~~~~~~~~   71 (240)
                      ..+.|++++|+..-      +++|||++.+||+++|.|-.|-|-+.|+ ..|+|+.        ++|+++ ...++....
T Consensus       254 g~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~-eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r  332 (501)
T COG3845         254 GEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV-EAISGLRKPASGRILLNGKDVLGRLSPRERR  332 (501)
T ss_pred             CCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHH-HHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence            35689999999875      8999999999999999999999999999 9999983        466665 333443333


Q ss_pred             ccCCCeEEEccC---ceecceecCcchhHHHh------------------------------------------------
Q 026304           72 RYAIDSVVTHDG---AKLPCWALPELTSFRQK------------------------------------------------  100 (240)
Q Consensus        72 ~~~~~~~v~q~~---~~~~~~~~~~~~~~~~~------------------------------------------------  100 (240)
                      +.+ .+|+|.+.   .+...+++.+|.-+...                                                
T Consensus       333 ~~G-~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK  411 (501)
T COG3845         333 RLG-LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQK  411 (501)
T ss_pred             hcC-CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceeh
Confidence            333 36777543   23333444433222110                                                


Q ss_pred             --hchhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          101 --LGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       101 --~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                        ++.++..+|++|++.+||.      ...+.+.|.+.++ .|+.|+++|-|++++          +.+||||.+|.+ +
T Consensus       412 ~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLDEi----------l~lsDrIaVi~~Gr  480 (501)
T COG3845         412 LILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLDEI----------LELSDRIAVIYEGR  480 (501)
T ss_pred             hhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHHHH----------HHhhheeeeeeCCc
Confidence              1234689999999999988      3468888889887 799999999999999          999999999999 8


Q ss_pred             eeccCCcceee
Q 026304          172 CELCGKRAFFT  182 (240)
Q Consensus       172 ~~~~g~~~~~~  182 (240)
                      +..+.++++.+
T Consensus       481 i~~~~~~~~~t  491 (501)
T COG3845         481 IVGIVPPEEAT  491 (501)
T ss_pred             eecccccccCC
Confidence            88877776544

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.58  E-value=1.5e-14  Score=120.42  Aligned_cols=120  Identities=18%  Similarity=0.084  Sum_probs=72.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC---CceEEeeccchhcccCCC-eEEEccC---ceeccee-cC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN---GRNIAMIKSSKDTRYAID-SVVTHDG---AKLPCWA-LP   92 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~---g~~i~~~~~~~~~~~~~~-~~v~q~~---~~~~~~~-~~   92 (240)
                      .+|++|++.+|++++|+||||+||||++ ++++++.+.   |..+    +....+.... .+...-.   ......+ ..
T Consensus        19 ~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~G~~v----pa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs   93 (204)
T cd03282          19 PNDIYLTRGSSRFHIITGPNMSGKSTYL-KQIALLAIMAQIGCFV----PAEYATLPIFNRLLSRLSNDDSMERNLSTFA   93 (204)
T ss_pred             EeeeEEeeCCCcEEEEECCCCCCHHHHH-HHHHHHHHHHHcCCCc----chhhcCccChhheeEecCCccccchhhhHHH
Confidence            7899999999999999999999999999 999886432   2221    1111111110 1111100   0000000 00


Q ss_pred             -cchhHHHhhchhhhccCcEEEEcCccC---h----HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           93 -ELTSFRQKLGDDAYAKLDVIGIDEAQF---F----EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        93 -~~~~~~~~~~~~l~~~p~lllLDEP~~---~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                       +...+.  ..-..+.+|+++++|||..   -    .....++..+.+ .+.++|++||+.+++
T Consensus        94 ~e~~~~~--~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~  154 (204)
T cd03282          94 SEMSETA--YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIA  154 (204)
T ss_pred             HHHHHHH--HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHH
Confidence             011111  1112467899999999944   1    124556777776 689999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.57  E-value=1.8e-14  Score=115.62  Aligned_cols=132  Identities=17%  Similarity=0.073  Sum_probs=78.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc-eEEeeccchhcccCCCeEEEccCc--eecceecCcchhH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR-NIAMIKSSKDTRYAIDSVVTHDGA--KLPCWALPELTSF   97 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~-~i~~~~~~~~~~~~~~~~v~q~~~--~~~~~~~~~~~~~   97 (240)
                      ....++.+.++.++.|+|||||||||++ +.+........ .+..   ....+.+  ..++....  .+....+......
T Consensus        11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l-~~i~~~~~~~~~~~~~---~~~~~~g--~~~~~~~~~~i~~~~~lS~G~~~   84 (162)
T cd03227          11 FVPNDVTFGEGSLTIITGPNGSGKSTIL-DAIGLALGGAQSATRR---RSGVKAG--CIVAAVSAELIFTRLQLSGGEKE   84 (162)
T ss_pred             EeccEEecCCCCEEEEECCCCCCHHHHH-HHHHHHHHhcchhhhc---cCcccCC--CcceeeEEEEehheeeccccHHH
Confidence            3445556666679999999999999999 98755322111 0000   0000000  11111110  1111112222222


Q ss_pred             HHhhchhhhc----cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceee
Q 026304           98 RQKLGDDAYA----KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTK  167 (240)
Q Consensus        98 ~~~~~~~l~~----~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~  167 (240)
                      ...+...+..    +|+++++|||+.      ...+.+.+.++..+ +.++|++||+.+..           ..+|+++.
T Consensus        85 ~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~~~-----------~~~d~~~~  152 (162)
T cd03227          85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPELA-----------ELADKLIH  152 (162)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHH-----------HhhhhEEE
Confidence            2223333333    899999999966      34677788887764 88999999999987           56899999


Q ss_pred             ecc
Q 026304          168 LTA  170 (240)
Q Consensus       168 l~~  170 (240)
                      |..
T Consensus       153 l~~  155 (162)
T cd03227         153 IKK  155 (162)
T ss_pred             EEE
Confidence            875

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.57  E-value=4.6e-15  Score=126.96  Aligned_cols=51  Identities=14%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .|+++++|||++      ...+.+.|+++++ .|.+||++||+.++.           .+||++++|..
T Consensus       177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~~~-----------~~~d~i~~~~~  233 (247)
T cd03275         177 PAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEEFF-----------SKADALVGVYR  233 (247)
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHHHH-----------hhCCeEEEEEe
Confidence            489999999988      3468888888876 589999999997655           78999999875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.57  E-value=6.1e-15  Score=126.38  Aligned_cols=50  Identities=12%  Similarity=0.133  Sum_probs=40.4

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      .+|+++++|||++      ...+.+.|+++.  .|.+||++||+.+.           ...||+++-++
T Consensus       187 ~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~~~-----------~~~~d~v~~~~  242 (251)
T cd03273         187 KPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKEGM-----------FNNANVLFRTR  242 (251)
T ss_pred             cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCHHH-----------HHhCCEEEEEE
Confidence            4789999999987      346788888874  48899999999554           47899998765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.57  E-value=1.2e-14  Score=122.56  Aligned_cols=139  Identities=18%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccCceecceecCcchh
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDGAKLPCWALPELTS   96 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~~~~~~~~~~~~~~   96 (240)
                      .+|++++..+|++++|.||||+||||++ +.++-..+   -|-.   .+.. ....+.. .++.+-+ +.... ..+...
T Consensus        20 ~~~~~~~~~~~~~~~l~G~n~~GKstll-~~i~~~~~la~~g~~---vpa~-~~~~~~~~~il~~~~-l~d~~-~~~lS~   92 (222)
T cd03285          20 PNDVTLTRGKSRFLIITGPNMGGKSTYI-RQIGVIVLMAQIGCF---VPCD-SADIPIVDCILARVG-ASDSQ-LKGVST   92 (222)
T ss_pred             EeeEEEeecCCeEEEEECCCCCChHHHH-HHHHHHHHHHHhCCC---cCcc-cEEEeccceeEeeec-cccch-hcCcCh
Confidence            7899999999999999999999999999 98763211   1210   0100 0000000 0111000 00000 011111


Q ss_pred             HHH---hhchhh--hccCcEEEEcCc---cC-hH---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304           97 FRQ---KLGDDA--YAKLDVIGIDEA---QF-FE---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus        97 ~~~---~~~~~l--~~~p~lllLDEP---~~-~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                      +..   .+...+  +.+|+++|||||   |+ .+   .....++.+.++.+.++|++||+ ..+          .++||+
T Consensus        93 ~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~-~el----------~~~~~~  161 (222)
T cd03285          93 FMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHF-HEL----------TALADE  161 (222)
T ss_pred             HHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEech-HHH----------HHHhhc
Confidence            111   111122  579999999999   66 22   23333455554357899999996 556          689999


Q ss_pred             eeeecc-eeeccCC
Q 026304          165 VTKLTA-RCELCGK  177 (240)
Q Consensus       165 i~~l~~-~~~~~g~  177 (240)
                      +..+++ ++..++.
T Consensus       162 ~~~i~~g~~~~~~~  175 (222)
T cd03285         162 VPNVKNLHVTALTD  175 (222)
T ss_pred             CCCeEEEEEEEEEe
Confidence            998888 6665543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.56  E-value=5.4e-14  Score=114.71  Aligned_cols=136  Identities=13%  Similarity=0.063  Sum_probs=77.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccc------hhcccC----CCeEEEccC-ceecce
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSS------KDTRYA----IDSVVTHDG-AKLPCW   89 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~------~~~~~~----~~~~v~q~~-~~~~~~   89 (240)
                      .++..+...++.+.+|+||||||||++| ..|.-. ..|+........      ...+.+    ...+.+... .+++.-
T Consensus        12 ~~~~~~~~~~~~~~~i~G~NGsGKSnil-~Ai~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~   89 (178)
T cd03239          12 YRDETVVGGSNSFNAIVGPNGSGKSNIV-DAICFV-LGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQG   89 (178)
T ss_pred             CCCCEEecCCCceEEEECCCCCCHHHHH-HHHHHH-cCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCC
Confidence            3555555544449999999999999999 776421 111111000000      000000    012222211 122221


Q ss_pred             ecCcch----hHHHhhchhh----hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchH
Q 026304           90 ALPELT----SFRQKLGDDA----YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV  155 (240)
Q Consensus        90 ~~~~~~----~~~~~~~~~l----~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~  155 (240)
                      ...+..    .....+...+    +.+|+++++|||++      ...+.+.+.++.+ .|.++|++||+++.+       
T Consensus        90 ~~~~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~~~-------  161 (178)
T cd03239          90 KVEQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKEMF-------  161 (178)
T ss_pred             cCcccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH-------
Confidence            111211    1111122223    26899999999987      3467888888876 589999999998876       


Q ss_pred             HHHHhhccceeeecc
Q 026304          156 LDIIPLADTVTKLTA  170 (240)
Q Consensus       156 ~~L~~~ad~i~~l~~  170 (240)
                          ..||+++.+..
T Consensus       162 ----~~adrvi~i~~  172 (178)
T cd03239         162 ----ENADKLIGVLF  172 (178)
T ss_pred             ----hhCCeEEEEEE
Confidence                57999998865

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.56  E-value=9.9e-15  Score=136.84  Aligned_cols=143  Identities=17%  Similarity=0.117  Sum_probs=93.8

Q ss_pred             CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEc
Q 026304            8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      ..+|+++|++..-      +++.+|++++|+.+.|.||||||||||+ |+|+|+..-|.-.-.+|...     ..-|+||
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLl-RaiaGLWP~g~G~I~~P~~~-----~~lflpQ  463 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLL-RALAGLWPWGSGRISMPADS-----ALLFLPQ  463 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHH-HHHhccCccCCCceecCCCC-----ceEEecC
Confidence            4689999999875      8999999999999999999999999999 99999843332111222110     0134555


Q ss_pred             cCceecceecCc------------------------chhHHHh--------------------hchhhhccCcEEEEcCc
Q 026304           82 DGAKLPCWALPE------------------------LTSFRQK--------------------LGDDAYAKLDVIGIDEA  117 (240)
Q Consensus        82 ~~~~~~~~~~~~------------------------~~~~~~~--------------------~~~~l~~~p~lllLDEP  117 (240)
                      .+.+... ++.+                        .-++..+                    +++.++++|++++|||.
T Consensus       464 ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA  542 (604)
T COG4178         464 RPYLPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA  542 (604)
T ss_pred             CCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence            4432211 1110                        0011111                    12336899999999999


Q ss_pred             cC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          118 QF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       118 ~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |+ .     ..+++++++-.  .+.|||.|+|.....           .+.++.+.+.+
T Consensus       543 TsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~tl~-----------~~h~~~l~l~~  588 (604)
T COG4178         543 TSALDEETEDRLYQLLKEEL--PDATVISVGHRPTLW-----------NFHSRQLELLD  588 (604)
T ss_pred             hhccChHHHHHHHHHHHhhC--CCCEEEEeccchhhH-----------HHHhhheeecc
Confidence            88 2     24555554433  589999999998765           66666665544

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=1.3e-13  Score=125.75  Aligned_cols=150  Identities=15%  Similarity=0.169  Sum_probs=97.8

Q ss_pred             CCCceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-h-hCCceEEeeccchhcccCCC
Q 026304            6 LKPAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-S-DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~-~~g~~i~~~~~~~~~~~~~~   76 (240)
                      .++|.+++.+|++.|       +.+++++++.-+.++++|+||+||||++ +++.+- . ..|  +....+    |.+ .
T Consensus       358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~l-Ki~~~~l~~~rg--i~~~~~----r~r-i  429 (582)
T KOG0062|consen  358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLL-KILKGDLTPTRG--IVGRHP----RLR-I  429 (582)
T ss_pred             CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHH-HHHhccCCcccc--eeeecc----cce-e
Confidence            456789999999998       7799999999999999999999999999 999873 2 112  111111    111 2


Q ss_pred             eEEEccCce---------------ecceecCcchhHH------------------------HhhchhhhccCcEEEEcCc
Q 026304           77 SVVTHDGAK---------------LPCWALPELTSFR------------------------QKLGDDAYAKLDVIGIDEA  117 (240)
Q Consensus        77 ~~v~q~~~~---------------~~~~~~~~~~~~~------------------------~~~~~~l~~~p~lllLDEP  117 (240)
                      +|.+|...-               ++..+-++.....                        ..++...+.+|.+|+||||
T Consensus       430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEP  509 (582)
T KOG0062|consen  430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEP  509 (582)
T ss_pred             cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCC
Confidence            333432211               1111111111100                        1112224789999999999


Q ss_pred             cC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          118 QF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       118 ~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      |+ .+ +-++.|.+..+..+-.|||||||.+++          ...|+.+++.++ ++.
T Consensus       510 TNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi----------~~~c~E~Wvve~g~vt  558 (582)
T KOG0062|consen  510 TNHLDRDSLGALAKALKNFNGGVVLVSHDEEFI----------SSLCKELWVVEDGKVT  558 (582)
T ss_pred             CccccHHHHHHHHHHHHhcCCcEEEEECcHHHH----------hhcCceeEEEcCCcEE
Confidence            99 22 334444333333677899999999999          999999999987 543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.49  E-value=1.5e-13  Score=123.84  Aligned_cols=148  Identities=18%  Similarity=0.132  Sum_probs=92.6

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC----ceEEeeccchhcccCCCeEE
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG----RNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g----~~i~~~~~~~~~~~~~~~~v   79 (240)
                      +++..++++.|    |+-=.-+|..||+++++||||-||||+. ++|+|..  ..|    ..+...++.....+.  +-|
T Consensus       342 lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFv-k~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~--gtV  418 (591)
T COG1245         342 LVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFV-KLLAGVIKPDEGSEEDLKVSYKPQYISPDYD--GTV  418 (591)
T ss_pred             eeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHH-HHHhccccCCCCCCccceEeecceeecCCCC--CcH
Confidence            45556666665    4444556778899999999999999999 9999962  223    233333322211110  111


Q ss_pred             Ec-----------cCce----ecceecCcch-----------hHHHhhchhhhccCcEEEEcCccC------hHHHHHHH
Q 026304           80 TH-----------DGAK----LPCWALPELT-----------SFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFC  127 (240)
Q Consensus        80 ~q-----------~~~~----~~~~~~~~~~-----------~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l  127 (240)
                      .+           ..+.    ...+.+....           ..+..++..+..++|+.+||||.+      +..+.+.|
T Consensus       419 ~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI  498 (591)
T COG1245         419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI  498 (591)
T ss_pred             HHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence            10           0000    0001111000           000111223688999999999977      22567888


Q ss_pred             HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          128 CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       128 ~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++.....++|.+++.||+-++          .-++||++++..
T Consensus       499 RR~~e~~~kta~vVdHDi~~~----------dyvsDr~ivF~G  531 (591)
T COG1245         499 RRFIENNEKTALVVDHDIYMI----------DYVSDRLIVFEG  531 (591)
T ss_pred             HHHHhhcCceEEEEecceehh----------hhhhceEEEEec
Confidence            998887889999999999998          888999999876

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.43  E-value=1.6e-12  Score=108.90  Aligned_cols=54  Identities=7%  Similarity=0.028  Sum_probs=42.3

Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCC-CEEEEEecChhhhhcccchHHHHHhhccce--eeec
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDG-KTVVVAGLDGDYLRRSFGSVLDIIPLADTV--TKLT  169 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g-~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i--~~l~  169 (240)
                      +.+|+++++|||++      ...+++.+.++.++.| .++|++||++...          .++||++  ++|.
T Consensus       146 ~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~----------~~~~~~~~v~~l~  208 (213)
T cd03277         146 LTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPG----------LNYHEKMTVLCVY  208 (213)
T ss_pred             ccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccC----------CcccCceEEEEEe
Confidence            47999999999987      3478888888876324 5899999999888          7888754  4444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=5.8e-14  Score=126.18  Aligned_cols=154  Identities=14%  Similarity=0.149  Sum_probs=92.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--h-CCceEEeeccc--------hh---
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--D-NGRNIAMIKSS--------KD---   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~-~g~~i~~~~~~--------~~---   70 (240)
                      -|.++|.+.+.     +.+-||.|..|..++++||||-|||||| +.|+.-.  + ...++..-.+.        ..   
T Consensus       264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLL-kHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl  342 (807)
T KOG0066|consen  264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLL-KHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL  342 (807)
T ss_pred             cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHH-HHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence            47888888775     7899999999999999999999999999 8886521  0 11111110000        00   


Q ss_pred             ----ccc---------------------------------------------CCCeEEEc-cCceecceecCcchhHHHh
Q 026304           71 ----TRY---------------------------------------------AIDSVVTH-DGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        71 ----~~~---------------------------------------------~~~~~v~q-~~~~~~~~~~~~~~~~~~~  100 (240)
                          .|.                                             -..|+-|. .-.-.|...+.+.+.++..
T Consensus       343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS  422 (807)
T KOG0066|consen  343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS  422 (807)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence                000                                             00000000 0000111112222233333


Q ss_pred             hchhhhccCcEEEEcCccC-hH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          101 LGDDAYAKLDVIGIDEAQF-FE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~-~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      ++..+...|-+|.|||||+ .+ .-+=+|..+.+-..+|+++||||-.|+          ...|..|+.|++ ++.+
T Consensus       423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFL----------D~VCtdIIHLD~qkLhy  489 (807)
T KOG0066|consen  423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFL----------DSVCTDIIHLDNQKLHY  489 (807)
T ss_pred             HHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchH----------HHHHHHHhhhhhhhhhh
Confidence            3455789999999999998 22 111123333333456999999999999          999999999998 7654

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.42  E-value=6.4e-13  Score=111.97  Aligned_cols=121  Identities=16%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEcc---CceecceecC-
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHD---GAKLPCWALP-   92 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~---~~~~~~~~~~-   92 (240)
                      .++++|.+.+|++++|+||||+||||++ +++++..+   .|.-+...    ..+.... .+..+-   ..+....+-. 
T Consensus        21 ~n~i~~~~~~g~~~~itG~N~~GKStll-~~i~~~~~la~~G~~v~a~----~~~~~~~~~i~~~~~~~d~~~~~~StF~   95 (222)
T cd03287          21 PNDIHLSAEGGYCQIITGPNMGGKSSYI-RQVALITIMAQIGSFVPAS----SATLSIFDSVLTRMGASDSIQHGMSTFM   95 (222)
T ss_pred             EEeEEEEecCCcEEEEECCCCCCHHHHH-HHHHHHHHHHhCCCEEEcC----ceEEeccceEEEEecCccccccccchHH
Confidence            7899999999999999999999999999 99998532   33322211    0111100 111110   0111111100 


Q ss_pred             -cchhHHHhhchhhhccCcEEEEcCc---cC-hH---HHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           93 -ELTSFRQKLGDDAYAKLDVIGIDEA---QF-FE---DLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        93 -~~~~~~~~~~~~l~~~p~lllLDEP---~~-~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                       +..++...+  ..+.++.++|+|||   |+ .+   ....+++.+.+..+.++|++||+.+..
T Consensus        96 ~e~~~~~~il--~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~  157 (222)
T cd03287          96 VELSETSHIL--SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLG  157 (222)
T ss_pred             HHHHHHHHHH--HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHH
Confidence             111111111  12568999999999   43 22   235567777763488999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.42  E-value=2.2e-12  Score=119.18  Aligned_cols=147  Identities=18%  Similarity=0.119  Sum_probs=96.2

Q ss_pred             CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeE
Q 026304            8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus         8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      +.+|++++|+..-       ++++||+|++|+-+.|+||||||||+|+ |.+.|+..  .|+-........    ...-|
T Consensus       431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLl-RvlggLWp~~~G~l~k~~~~~~----~~lff  505 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLL-RVLGGLWPSTGGKLTKPTDGGP----KDLFF  505 (659)
T ss_pred             cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHH-HHHhcccccCCCeEEecccCCC----CceEE
Confidence            3589999999874       7899999999999999999999999999 99999832  232211111100    11134


Q ss_pred             EEccCc----------eecceecC---------cchhHH---------Hh-------------------------hchhh
Q 026304           79 VTHDGA----------KLPCWALP---------ELTSFR---------QK-------------------------LGDDA  105 (240)
Q Consensus        79 v~q~~~----------~~~~~~~~---------~~~~~~---------~~-------------------------~~~~l  105 (240)
                      +||.+.          ++|.....         +...+.         .+                         +++.+
T Consensus       506 lPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLf  585 (659)
T KOG0060|consen  506 LPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLF  585 (659)
T ss_pred             ecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHH
Confidence            454332          22211110         001111         11                         12225


Q ss_pred             hccCcEEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          106 YAKLDVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       106 ~~~p~lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .++|++-+|||.|+.  .++-..+-+..++.|+|.|-|+|.....           .+=|.++.|+.
T Consensus       586 y~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~-----------kfHd~~L~~~g  641 (659)
T KOG0060|consen  586 YHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLW-----------KFHDYVLRMDG  641 (659)
T ss_pred             hcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHH-----------hhhhEEEEecC
Confidence            899999999999993  3566666666666899999999998765           66677776653

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.39  E-value=1.5e-12  Score=109.16  Aligned_cols=116  Identities=16%  Similarity=0.092  Sum_probs=64.3

Q ss_pred             CCcccCc--EEEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceec-ceecCcch-hH
Q 026304           25 LPHRNSG--EIHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP-CWALPELT-SF   97 (240)
Q Consensus        25 sl~i~~G--e~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~-~~~~~~~~-~~   97 (240)
                      ++.+.++  .+++|+||||+|||||| |.+....   ..|.-+..    ...+   .++..|....+. ..++.+.. .+
T Consensus        21 d~~l~~~~~~~~~itGpNg~GKStlL-k~i~~~~~la~~G~~v~a----~~~~---~~~~d~i~~~l~~~~si~~~~S~f   92 (213)
T cd03281          21 DTEIGGGGPSIMVITGPNSSGKSVYL-KQVALIVFLAHIGSFVPA----DSAT---IGLVDKIFTRMSSRESVSSGQSAF   92 (213)
T ss_pred             eEEecCCCceEEEEECCCCCChHHHH-HHHHHHHHHHhCCCeeEc----CCcE---EeeeeeeeeeeCCccChhhccchH
Confidence            3444444  89999999999999999 9887432   12322211    0111   123222211111 11111111 11


Q ss_pred             HHh-----hchhhhccCcEEEEcCccC----h---HHHHHHHHHHHhc--CCCEEEEEecChhhh
Q 026304           98 RQK-----LGDDAYAKLDVIGIDEAQF----F---EDLYEFCCNAADH--DGKTVVVAGLDGDYL  148 (240)
Q Consensus        98 ~~~-----~~~~l~~~p~lllLDEP~~----~---~~i~~~l~~l~~~--~g~tvi~vtHd~~~~  148 (240)
                      ...     .....+.+|.++++|||+.    .   ..+..+++++.+.  .+.++|++||+.+.+
T Consensus        93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~  157 (213)
T cd03281          93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF  157 (213)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence            111     1123467999999999966    1   1234577777652  135899999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.35  E-value=2.5e-12  Score=105.42  Aligned_cols=43  Identities=9%  Similarity=-0.065  Sum_probs=30.8

Q ss_pred             hccCcEEEEcCccC------hHHH-HHHHHHHHhcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQF------FEDL-YEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      +.+|+++|+|||+.      ...+ ..+++.+.++.+.++|++||+.+..
T Consensus        76 ~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~  125 (185)
T smart00534       76 ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELT  125 (185)
T ss_pred             CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHH
Confidence            34999999999966      2233 3455666552388999999999644

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.32  E-value=3e-12  Score=114.58  Aligned_cols=137  Identities=21%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-Cc--------eEEeeccchhcccCCCeEEEccC--ceecc-
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GR--------NIAMIKSSKDTRYAIDSVVTHDG--AKLPC-   88 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~--------~i~~~~~~~~~~~~~~~~v~q~~--~~~~~-   88 (240)
                      ++|+||++++|++++|+|+|||||||+| ++|.|.... +.        .+. .+........-..+-|+.+  .+... 
T Consensus       399 lr~vNL~ikpGdvvaVvGqSGaGKttll-Rmi~G~~~~~~ee~y~p~sg~v~-vp~nt~~a~iPge~Ep~f~~~tilehl  476 (593)
T COG2401         399 LRNLNLEIKPGDVVAVVGQSGAGKTTLL-RMILGAQKGRGEEKYRPDSGKVE-VPKNTVSALIPGEYEPEFGEVTILEHL  476 (593)
T ss_pred             eeceeeEecCCCeEEEEecCCCCcchHH-HHHHHHhhcccccccCCCCCcee-ccccchhhccCcccccccCchhHHHHH
Confidence            7899999999999999999999999999 999996321 11        010 0000000000000111100  00000 


Q ss_pred             --ee--------------cCcc-------------hhHHHhhchhhhccCcEEEEcCccC------hHHHHHHHHHHHhc
Q 026304           89 --WA--------------LPEL-------------TSFRQKLGDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADH  133 (240)
Q Consensus        89 --~~--------------~~~~-------------~~~~~~~~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~  133 (240)
                        .+              +.+.             .....+++..+...|.+++.||-.+      ...+..-+.+++.+
T Consensus       477 ~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe  556 (593)
T COG2401         477 RSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE  556 (593)
T ss_pred             hhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence              00              0000             0111112333678999999999866      23567777888877


Q ss_pred             CCCEEEEEecChhhhhcccchHHHHHhh-ccceeeec
Q 026304          134 DGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLT  169 (240)
Q Consensus       134 ~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~  169 (240)
                      .|.|++++||..++.          .++ -|+++.+.
T Consensus       557 ~giTlivvThrpEv~----------~AL~PD~li~vg  583 (593)
T COG2401         557 AGITLIVVTHRPEVG----------NALRPDTLILVG  583 (593)
T ss_pred             hCCeEEEEecCHHHH----------hccCCceeEEee
Confidence            899999999999998          667 56666543

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.31  E-value=1.9e-11  Score=102.78  Aligned_cols=121  Identities=15%  Similarity=0.048  Sum_probs=69.8

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC---CceEEeeccchhcccCCC-eEEEcc---Cceecceec--
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN---GRNIAMIKSSKDTRYAID-SVVTHD---GAKLPCWAL--   91 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~---g~~i~~~~~~~~~~~~~~-~~v~q~---~~~~~~~~~--   91 (240)
                      -+|++|+..+|++++|+||||+||||++ +.+++..+.   |-.+   +.. ..+.... .+..+-   ..+....+-  
T Consensus        20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l-~~i~~~~~la~~G~~v---pa~-~~~i~~~~~i~~~~~~~d~~~~~~StF~   94 (218)
T cd03286          20 PNDVDLGATSPRILVLTGPNMGGKSTLL-RTVCLAVIMAQMGMDV---PAK-SMRLSLVDRIFTRIGARDDIMKGESTFM   94 (218)
T ss_pred             EeeeEEeecCCcEEEEECCCCCchHHHH-HHHHHHHHHHHcCCcc---Ccc-ccEeccccEEEEecCcccccccCcchHH
Confidence            6899999999999999999999999999 999876332   2211   111 1111110 111110   000111000  


Q ss_pred             CcchhHHHhhchhhhccCcEEEEcCccC----h--HHHHHH-HHHHHhcCCCEEEEEecChhhh
Q 026304           92 PELTSFRQKLGDDAYAKLDVIGIDEAQF----F--EDLYEF-CCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        92 ~~~~~~~~~~~~~l~~~p~lllLDEP~~----~--~~i~~~-l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      .+..++...+  ..+.+|.++|+|||..    .  ..+... ++.+.+..+.+++++||+.+.+
T Consensus        95 ~e~~~~~~il--~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~  156 (218)
T cd03286          95 VELSETANIL--RHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLC  156 (218)
T ss_pred             HHHHHHHHHH--HhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHH
Confidence            0111111111  1257899999999943    1  233333 5566552389999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.29  E-value=1.2e-11  Score=118.27  Aligned_cols=64  Identities=22%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-eee
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-RCE  173 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-~~~  173 (240)
                      ...-+++|||||.      ...+++.|.++.+ .|-|||++.|+++.+           ..||+|+-|-      . .++
T Consensus       842 tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLdVI-----------k~AD~IIDLGPeGG~~GG~iv  909 (935)
T COG0178         842 TGKTLYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLDVI-----------KTADWIIDLGPEGGDGGGEIV  909 (935)
T ss_pred             CCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccceE-----------eecCEEEEcCCCCCCCCceEE
Confidence            3447999999988      3478888899998 799999999999987           8899999883      2 677


Q ss_pred             ccCCcceee
Q 026304          174 LCGKRAFFT  182 (240)
Q Consensus       174 ~~g~~~~~~  182 (240)
                      +.|+|+++.
T Consensus       910 a~GTPeeva  918 (935)
T COG0178         910 ASGTPEEVA  918 (935)
T ss_pred             EecCHHHHH
Confidence            777776543

>TIGR01069 mutS2 MutS2 family protein

Probab=99.29  E-value=3.8e-12  Score=124.37  Aligned_cols=131  Identities=11%  Similarity=0.051  Sum_probs=76.8

Q ss_pred             eEEEcceeEeeecC-----CCCcccCc-EEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEE
Q 026304           10 AVTTNQVNSGRDRV-----GLPHRNSG-EIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus        10 ~l~~~~ls~~~l~~-----vsl~i~~G-e~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .+.++++.+-++++     +|+.+..+ ++++|+||||+|||||| ++++|..+   .|..+.   .......   ++..
T Consensus       295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlL-K~i~~~~l~aq~G~~Vp---a~~~~~~---~~~d  367 (771)
T TIGR01069       295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTL-KTLGLLALMFQSGIPIP---ANEHSEI---PYFE  367 (771)
T ss_pred             CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHH-HHHHHHHHHHHhCCCcc---CCccccc---cchh
Confidence            47777777666543     78888877 89999999999999999 99988632   232211   1110111   1111


Q ss_pred             ccCceec-ceecCcch-hHHHh---hchh--hhccCcEEEEcCccC------hHHH-HHHHHHHHhcCCCEEEEEecChh
Q 026304           81 HDGAKLP-CWALPELT-SFRQK---LGDD--AYAKLDVIGIDEAQF------FEDL-YEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus        81 q~~~~~~-~~~~~~~~-~~~~~---~~~~--l~~~p~lllLDEP~~------~~~i-~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                      |....+. ..++.+.. .|...   +...  .+.+|.++|+|||..      ...+ ..++..+.+ .|.++|++||+.+
T Consensus       368 ~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~e  446 (771)
T TIGR01069       368 EIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYKE  446 (771)
T ss_pred             heeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHH
Confidence            1110000 01111111 11100   1111  135899999999966      2234 456677766 6899999999988


Q ss_pred             hh
Q 026304          147 YL  148 (240)
Q Consensus       147 ~~  148 (240)
                      +.
T Consensus       447 L~  448 (771)
T TIGR01069       447 LK  448 (771)
T ss_pred             HH
Confidence            65

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.26  E-value=2.4e-11  Score=105.66  Aligned_cols=50  Identities=10%  Similarity=-0.006  Sum_probs=42.3

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +|+++++|||++      ...+.+.+.++.+  +.++|++||+++.           ..+||+++.|.+
T Consensus       192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~~-----------~~~~d~~~~l~~  247 (276)
T cd03241         192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQV-----------AAMADNHFLVEK  247 (276)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHHH-----------HHhcCcEEEEEE
Confidence            999999999977      3467888888754  6899999999984           479999999876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.25  E-value=9.5e-12  Score=114.06  Aligned_cols=129  Identities=16%  Similarity=0.065  Sum_probs=83.9

Q ss_pred             EEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEcc
Q 026304           11 VTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus        11 l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      |.++|+-+--      +..++|+|++|-.+.|+||||||||+|+ |+|.|+.  .+|.  ...|+..     ..-|+||.
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLf-RILggLWPvy~g~--L~~P~~~-----~mFYIPQR  553 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLF-RILGGLWPVYNGL--LSIPRPN-----NIFYIPQR  553 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHH-HHHhccCcccCCe--eecCCCc-----ceEeccCC
Confidence            4555554432      6789999999999999999999999999 9999983  2332  2222211     12345554


Q ss_pred             Cc----------eecceecC----------cchhHH---------Hh-----------------------hchhhhccCc
Q 026304           83 GA----------KLPCWALP----------ELTSFR---------QK-----------------------LGDDAYAKLD  110 (240)
Q Consensus        83 ~~----------~~~~~~~~----------~~~~~~---------~~-----------------------~~~~l~~~p~  110 (240)
                      +.          .+|+. ..          +...+.         .+                       ++....++|+
T Consensus       554 PYms~gtlRDQIIYPdS-~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPk  632 (728)
T KOG0064|consen  554 PYMSGGTLRDQIIYPDS-SEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPK  632 (728)
T ss_pred             CccCcCcccceeecCCc-HHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcc
Confidence            32          22211 11          000000         00                       0122589999


Q ss_pred             EEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          111 VIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       111 lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      +-+|||.|+.  -++-..+-+.++..|.+.+-+||.+...
T Consensus       633 yalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrpslw  672 (728)
T KOG0064|consen  633 YALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRPSLW  672 (728)
T ss_pred             hhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCccHH
Confidence            9999999993  3566677777777899999999999865

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.24  E-value=1.2e-11  Score=111.87  Aligned_cols=55  Identities=29%  Similarity=0.175  Sum_probs=46.8

Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++++.+++++|||++      +-.....++++++ .+++|++|.||+..+          ..++|-|.++..
T Consensus       228 l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~-~~k~ViVVEHDLavL----------D~lsD~vhI~YG  288 (591)
T COG1245         228 LLRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-DGKYVIVVEHDLAVL----------DYLSDFVHILYG  288 (591)
T ss_pred             HhccCCEEEEcCCcccccHHHHHHHHHHHHHHhc-cCCeEEEEechHHHH----------HHhhheeEEEec
Confidence            589999999999998      2256778889987 589999999999888          788998888764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.24  E-value=7.5e-11  Score=122.34  Aligned_cols=62  Identities=16%  Similarity=0.119  Sum_probs=52.2

Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec------c-eeecc
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT------A-RCELC  175 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~------~-~~~~~  175 (240)
                      +.+++|||||.      ...+++.|.++.+ .|-|||++.||++.+           ..||+|+-|-      . +++++
T Consensus      1721 ~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~~~i-----------~~aD~iidlgp~gG~~GG~iva~ 1788 (1809)
T PRK00635       1721 PTLFLLDEIATSLDNQQKSALLVQLRTLVS-LGHSVIYIDHDPALL-----------KQADYLIEMGPGSGKTGGKILFS 1788 (1809)
T ss_pred             CcEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHH-----------HhCCEEEEcCCCcccCCCEEEEE
Confidence            68999999988      3478888999997 799999999999998           5599999984      2 78888


Q ss_pred             CCcceee
Q 026304          176 GKRAFFT  182 (240)
Q Consensus       176 g~~~~~~  182 (240)
                      |+|+++.
T Consensus      1789 Gtp~~i~ 1795 (1809)
T PRK00635       1789 GPPKDIS 1795 (1809)
T ss_pred             eCHHHHh
Confidence            8887653

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.20  E-value=5.1e-11  Score=105.24  Aligned_cols=137  Identities=14%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhccc---CCCeEEEccCceecceecCcchhHHHh
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRY---AIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~---~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      +++.+..|+.++|+||+|||||||+ +.+.++......+..+........   ....+..+...  .   ......+...
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~--~---~~~~~~~~~~  210 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGG--Q---GLAKVTPKDL  210 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCC--C---CcCccCHHHH
Confidence            3466789999999999999999999 999987443333322221110000   01112211100  0   0111222223


Q ss_pred             hchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          101 LGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      +...+-++|++|++|||... +.+++++.+.. .+.+++.++|..+..           ...+|+..|.. .....|.+.
T Consensus       211 l~~~Lr~~pd~ii~gE~r~~-e~~~~l~a~~~-g~~~~i~T~Ha~~~~-----------~~~~Rl~~l~~~~~~~~g~~~  277 (308)
T TIGR02788       211 LQSCLRMRPDRIILGELRGD-EAFDFIRAVNT-GHPGSITTLHAGSPE-----------EAFEQLALMVKSSQAGLGLDF  277 (308)
T ss_pred             HHHHhcCCCCeEEEeccCCH-HHHHHHHHHhc-CCCeEEEEEeCCCHH-----------HHHHHHHHHhhccccccCCCH
Confidence            33345689999999999874 56777777653 334679999998844           55788877765 454445443

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.19  E-value=8e-11  Score=117.61  Aligned_cols=144  Identities=19%  Similarity=0.182  Sum_probs=112.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-----------hhCCceEEeeccchhcccCCCeEEEccCceecce
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-----------SDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW   89 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-----------~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~   89 (240)
                      ++|+|.-+++|+.+.++||.|||||||| +.++|-           .++|.+...+.+     .+...|.+|.+.-++.+
T Consensus       131 l~~~sg~~~pg~m~lvLG~pgsG~ttll-kal~g~~~~~~~~~~~isy~G~~~~e~~~-----~~~~aY~~e~DvH~p~l  204 (1391)
T KOG0065|consen  131 LKDISGIIKPGEMTLVLGPPGSGKTTLL-KALAGKLDNFLKSSGEITYNGHDLKEFVP-----KKTVAYNSEQDVHFPEL  204 (1391)
T ss_pred             ecCcceeEcCCceEEEecCCCCchHHHH-HHHhCCCcccccCCCceeECCCccccccc-----CceEEecccccccccee
Confidence            8999999999999999999999999999 999994           223333322222     22347888988889999


Q ss_pred             ecCcchhHHHhh----------------------------------------------ch---------hhhccCcEEEE
Q 026304           90 ALPELTSFRQKL----------------------------------------------GD---------DAYAKLDVIGI  114 (240)
Q Consensus        90 ~~~~~~~~~~~~----------------------------------------------~~---------~l~~~p~lllL  114 (240)
                      |+.+.+++..+.                                              +|         .++.++.++++
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~  284 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW  284 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence            998777665432                                              00         13789999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChh-hhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGD-YLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~-~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ||++.      .-++.+.|+++++..+.|++++-|... .+          ..+.|+|++|.+ +++++|+.+.
T Consensus       285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~----------~~lFD~v~lL~eG~~iy~Gp~d~  348 (1391)
T KOG0065|consen  285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEI----------YDLFDDVILLSEGYQIYQGPRDE  348 (1391)
T ss_pred             ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHH----------HHhhhheeeeeccceEEeccHHH
Confidence            99977      237888889988777889998888764 34          789999999999 9999998653

>PRK13695 putative NTPase; Provisional

Probab=99.18  E-value=1.3e-10  Score=94.11  Aligned_cols=57  Identities=21%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             hhccCcEEEEcCccCh----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          105 AYAKLDVIGIDEAQFF----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       105 l~~~p~lllLDEP~~~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      .+.+|++|++|||...    ..+.+.+.++.+ .+.++|+++|+. .+          ..++|+|..+.+ ++.
T Consensus        93 ~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~-~~~~~i~v~h~~-~~----------~~~~~~i~~~~~~~i~  154 (174)
T PRK13695         93 ALEEADVIIIDEIGKMELKSPKFVKAVEEVLD-SEKPVIATLHRR-SV----------HPFVQEIKSRPGGRVY  154 (174)
T ss_pred             ccCCCCEEEEECCCcchhhhHHHHHHHHHHHh-CCCeEEEEECch-hh----------HHHHHHHhccCCcEEE
Confidence            4568999999996432    356788888875 799999999994 55          578999999888 554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.11  E-value=2e-10  Score=97.34  Aligned_cols=143  Identities=19%  Similarity=0.162  Sum_probs=78.2

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccCCCeEEEcc----Cce-----ecce
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYAIDSVVTHD----GAK-----LPCW   89 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~~~~~v~q~----~~~-----~~~~   89 (240)
                      +...+++|+++.|+||||||||||.++++.+..-.|..+..+.....     ......++-.+.    +.+     ++..
T Consensus        17 l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~   96 (230)
T PRK08533         17 LGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLL   96 (230)
T ss_pred             hCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccc
Confidence            34458999999999999999999954888876556665554432210     000000110000    000     0100


Q ss_pred             ec-CcchhHHHhh-chhhhccCcEEEEcCccC-h---------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304           90 AL-PELTSFRQKL-GDDAYAKLDVIGIDEAQF-F---------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD  157 (240)
Q Consensus        90 ~~-~~~~~~~~~~-~~~l~~~p~lllLDEP~~-~---------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~  157 (240)
                      .. .+...+...+ ......+|+++++|||++ .         .++.++++.+++ .|.|+++ ||+.......+.  ..
T Consensus        97 ~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~-t~~~~~~~~~~~--~~  172 (230)
T PRK08533         97 SGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIIL-TANPKELDESVL--TI  172 (230)
T ss_pred             cChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEE-Eecccccccccc--ee
Confidence            00 0001111111 111235799999999976 2         357777777766 5776554 666554322221  23


Q ss_pred             HHhhccceeeecc
Q 026304          158 IIPLADTVTKLTA  170 (240)
Q Consensus       158 L~~~ad~i~~l~~  170 (240)
                      +..+||-|+.|+.
T Consensus       173 ~~~~~DgvI~L~~  185 (230)
T PRK08533        173 LRTAATMLIRLEV  185 (230)
T ss_pred             EEEeeeEEEEEEE
Confidence            4677888888875

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.11  E-value=1e-10  Score=114.70  Aligned_cols=179  Identities=13%  Similarity=0.043  Sum_probs=92.3

Q ss_pred             CCCCccc-CcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccCceecceecCcch-h
Q 026304           23 VGLPHRN-SGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDGAKLPCWALPELT-S   96 (240)
Q Consensus        23 ~vsl~i~-~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~~~~~~~~~~~~~-~   96 (240)
                      ..++.+. .+.++.|+|||++||||+| |.+....+   .|-.+..   ....+.+.. .+....+.   ..++.... .
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~l-ktigl~~~maq~G~~vpa---~~~~~i~~~~~i~~~ig~---~~si~~~lSt  390 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTL-KTLGLAALMAKSGLPIPA---NEPSEIPVFKEIFADIGD---EQSIEQSLST  390 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHH-HHHHHHHHHHHhCCCccc---CCCccccccceEEEecCC---ccchhhchhH
Confidence            4455554 4568999999999999999 98865422   2322211   100111110 11111000   00111111 1


Q ss_pred             HHHh---hchh--hhccCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304           97 FRQK---LGDD--AYAKLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus        97 ~~~~---~~~~--l~~~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                      |...   ....  .+.+|.++|+|||..      ...+. .++..+.+ .|.++|++||+.+..          ...+++
T Consensus       391 fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el~----------~~~~~~  459 (782)
T PRK00409        391 FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKELK----------ALMYNR  459 (782)
T ss_pred             HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHHH----------HHHhcC
Confidence            1110   0111  136899999999966      22343 45666665 689999999999888          666676


Q ss_pred             eeeecceeeccCCcceeeeeecCCCcEEEeCCcceEEeecchhhccCcccccccccccccc
Q 026304          165 VTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYVNGQVVIGAARNVLEFH  225 (240)
Q Consensus       165 i~~l~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~y~~~c~~~~~~~~~~~~~~~~~~~~~  225 (240)
                      ..+....+.++...-.++.++..|.      ....|.-.+.+.+.........|+.++...
T Consensus       460 ~~v~~~~~~~d~~~l~~~Ykl~~G~------~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~  514 (782)
T PRK00409        460 EGVENASVEFDEETLRPTYRLLIGI------PGKSNAFEIAKRLGLPENIIEEAKKLIGED  514 (782)
T ss_pred             CCeEEEEEEEecCcCcEEEEEeeCC------CCCcHHHHHHHHhCcCHHHHHHHHHHHhhh
Confidence            6655444443322112233332221      123344444555555566666666666443

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.10  E-value=7e-10  Score=91.91  Aligned_cols=107  Identities=20%  Similarity=0.188  Sum_probs=62.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchhC--CceEEeec-cchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESDN--GRNIAMIK-SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL  109 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~~--g~~i~~~~-~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p  109 (240)
                      ++.|.||+||||||++ +.+.+....  +..+.... +..........++.|...      -.+...+...+...+..+|
T Consensus         3 lilI~GptGSGKTTll-~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~v------g~~~~~~~~~i~~aLr~~p   75 (198)
T cd01131           3 LVLVTGPTGSGKSTTL-AAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREV------GLDTLSFENALKAALRQDP   75 (198)
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHhhhcCCcEEEEEcCCccccccCccceeeeccc------CCCccCHHHHHHHHhcCCc
Confidence            7899999999999999 877765321  22333221 111111111123333211      0011223333444456799


Q ss_pred             cEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          110 DVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       110 ~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      +++++|||...+.+...+ +.+. .|..++.++|..+..
T Consensus        76 d~ii~gEird~e~~~~~l-~~a~-~G~~v~~t~Ha~~~~  112 (198)
T cd01131          76 DVILVGEMRDLETIRLAL-TAAE-TGHLVMSTLHTNSAA  112 (198)
T ss_pred             CEEEEcCCCCHHHHHHHH-HHHH-cCCEEEEEecCCcHH
Confidence            999999997654444434 5555 689999999998765

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.09  E-value=3.7e-10  Score=91.62  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      .+.--+.+||||.+      +.+++..|+++++ .|.-+||+||.+-.+
T Consensus       144 f~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPiLl  191 (233)
T COG3910         144 FNGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPILL  191 (233)
T ss_pred             hccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChhhe
Confidence            56778999999966      3468888889987 799999999998655

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.07  E-value=3.5e-11  Score=89.77  Aligned_cols=59  Identities=14%  Similarity=-0.053  Sum_probs=41.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC--chhCCceEEeeccchhcccCCCeEEEcc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS--ESDNGRNIAMIKSSKDTRYAIDSVVTHD   82 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g--l~~~g~~i~~~~~~~~~~~~~~~~v~q~   82 (240)
                      |++++|++++|++++|+||||||||||+ +++..  ..+.|.++..++.....+  ..++++|+
T Consensus         5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl-~~l~~G~i~~~g~di~~~~~~~~~~--~~~~~~q~   65 (107)
T cd00820           5 LHGVLVDVYGKVGVLITGDSGIGKTELA-LELIKRKHRLVGDDNVEIREDSKDE--LIGRNPEL   65 (107)
T ss_pred             EEeeEEEEcCCEEEEEEcCCCCCHHHHH-HHhhCCeEEEeeEeHHHhhhhhcCC--EEEEechh
Confidence            7899999999999999999999999999 88763  234455544433222222  23566665

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.01  E-value=2.8e-09  Score=86.57  Aligned_cols=137  Identities=16%  Similarity=0.056  Sum_probs=74.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccCCCeEEEc----cCc-ee----c-ceecCcch--
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYAIDSVVTH----DGA-KL----P-CWALPELT--   95 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~~~~~v~q----~~~-~~----~-~~~~~~~~--   95 (240)
                      ++.|.||.|+|||||.++++....-.|..+..+.....     .+....++-..    .+. .+    + .+...+..  
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~   80 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR   80 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence            36899999999999986665554456666655542210     01000011000    000 00    0 00000000  


Q ss_pred             -hHHHhhc-hhhhccCcEEEEcCccCh---------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304           96 -SFRQKLG-DDAYAKLDVIGIDEAQFF---------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus        96 -~~~~~~~-~~l~~~p~lllLDEP~~~---------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                       .+...+. .....+|+++++|||+..         ..+.++++.+++ .|.|+|+++|+...... ......+..+||.
T Consensus        81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~-~~~~~~~~~~aD~  158 (187)
T cd01124          81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGT-GFGGGDVEYLVDG  158 (187)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCc-ccCcCceeEeeeE
Confidence             1111111 113468999999999762         245667777776 69999999998875211 1112234788999


Q ss_pred             eeeecce
Q 026304          165 VTKLTAR  171 (240)
Q Consensus       165 i~~l~~~  171 (240)
                      ++.|+..
T Consensus       159 ii~l~~~  165 (187)
T cd01124         159 VIRLRLD  165 (187)
T ss_pred             EEEEEEE
Confidence            9998753

A related protein is found in archaea.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.00  E-value=2.4e-09  Score=84.21  Aligned_cols=136  Identities=15%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchhcc-----c-CCC-eEEEccCceecceecCcchhHHH--hhc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKDTR-----Y-AID-SVVTHDGAKLPCWALPELTSFRQ--KLG  102 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~~~-----~-~~~-~~v~q~~~~~~~~~~~~~~~~~~--~~~  102 (240)
                      +++|.||+|+||||++ +.+++. ...|..+..+.......     . ... ....+....+...+.........  ...
T Consensus         1 ~~~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (165)
T cd01120           1 LILVFGPTGSGKTTLA-LQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAER   79 (165)
T ss_pred             CeeEeCCCCCCHHHHH-HHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHH
Confidence            4789999999999999 777664 33455555443221100     0 000 00000111111111111111100  011


Q ss_pred             hhhhccCcEEEEcCccCh---------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccc---hHHHHHhhccc
Q 026304          103 DDAYAKLDVIGIDEAQFF---------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG---SVLDIIPLADT  164 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~~---------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~---~~~~L~~~ad~  164 (240)
                      .....+|+++++|||+..               .+.+..+.+..++.+.++++++|........++   ....+..+||-
T Consensus        80 ~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~  159 (165)
T cd01120          80 LRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADT  159 (165)
T ss_pred             HHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccCcccccCccceeeecce
Confidence            223568999999999742               122323333333369999999998865533221   11334555666


Q ss_pred             eeeec
Q 026304          165 VTKLT  169 (240)
Q Consensus       165 i~~l~  169 (240)
                      ++.++
T Consensus       160 ~~~l~  164 (165)
T cd01120         160 VIVLS  164 (165)
T ss_pred             EEEEe
Confidence            66553

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.98  E-value=2.4e-09  Score=90.76  Aligned_cols=142  Identities=16%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhc-----ccCCCeEEEccC----c--eec----ce
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDT-----RYAIDSVVTHDG----A--KLP----CW   89 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~-----~~~~~~~v~q~~----~--~~~----~~   89 (240)
                      .--+++|.++.|.|++|||||||...++.+..-.|..+..+......     +....++-..+.    .  .++    ..
T Consensus        19 ~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~   98 (234)
T PRK06067         19 GGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGF   98 (234)
T ss_pred             CCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccc
Confidence            44689999999999999999999955545443456666555422110     000001100000    0  000    00


Q ss_pred             ec--CcchhHHHhhchhh-hccCcEEEEcCccC------hH---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304           90 AL--PELTSFRQKLGDDA-YAKLDVIGIDEAQF------FE---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD  157 (240)
Q Consensus        90 ~~--~~~~~~~~~~~~~l-~~~p~lllLDEP~~------~~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~  157 (240)
                      ..  .....+...+.... -.+|+++++|||++      ..   .++..++.+++ .+.|+++++|+..+..+   ....
T Consensus        99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~---~~~~  174 (234)
T PRK06067         99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEE---LLSR  174 (234)
T ss_pred             ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHH---HHHH
Confidence            00  01111111111111 13999999999974      12   33344555565 68999999998765321   1133


Q ss_pred             HHhhccceeeecc
Q 026304          158 IIPLADTVTKLTA  170 (240)
Q Consensus       158 L~~~ad~i~~l~~  170 (240)
                      +..++|-++.|+.
T Consensus       175 ~~~l~DgvI~L~~  187 (234)
T PRK06067        175 IRSICDVYLKLRA  187 (234)
T ss_pred             HHhheEEEEEEEe
Confidence            4677888887764

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.96  E-value=1.3e-09  Score=100.31  Aligned_cols=143  Identities=21%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCc-eEEee--ccch-----------hcccCCCeEEEccCc--
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGR-NIAMI--KSSK-----------DTRYAIDSVVTHDGA--   84 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~-~i~~~--~~~~-----------~~~~~~~~~v~q~~~--   84 (240)
                      ++++ |.+.+|++++|+|+||+|||||+ ++|+|+.-... .+...  ....           ....+...++.+...  
T Consensus       149 id~l-~~i~~Gq~i~I~G~sG~GKStLl-~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~  226 (438)
T PRK07721        149 IDSL-LTVGKGQRVGIFAGSGVGKSTLM-GMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPA  226 (438)
T ss_pred             hhee-eeecCCcEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCH
Confidence            7899 99999999999999999999999 99998732111 11111  0000           000111123332111  


Q ss_pred             eecceecCcchhHHHhhchhhhccCcEEEEc-----------------CccC--------hHHHHHHHHHHHh-cCCC--
Q 026304           85 KLPCWALPELTSFRQKLGDDAYAKLDVIGID-----------------EAQF--------FEDLYEFCCNAAD-HDGK--  136 (240)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~l~~~p~lllLD-----------------EP~~--------~~~i~~~l~~l~~-~~g~--  136 (240)
                      ........-......++..+  .+-=+|++|                 ||-.        +..+.+++.++.. ..|.  
T Consensus       227 ~~r~~~~~~a~~iAEyfr~~--g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT  304 (438)
T PRK07721        227 LMRIKGAYTATAIAEYFRDQ--GLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSIT  304 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHC--CCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCee
Confidence            00000000001111112110  122245556                 7622        4467777777763 2575  


Q ss_pred             ---EEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          137 ---TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       137 ---tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                         ||++.+||++.            .+||++..+.+ +++.+++.+
T Consensus       305 ~~~TVlv~~hdm~e------------~i~d~v~~i~dG~Ivls~~la  339 (438)
T PRK07721        305 AFYTVLVDGDDMNE------------PIADTVRGILDGHFVLDRQLA  339 (438)
T ss_pred             eEEEEEEECCCCCc------------hhhhhEEEecCEEEEEeccHH
Confidence               99999999983            68999999999 888887754

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=98.93  E-value=3.5e-09  Score=91.76  Aligned_cols=31  Identities=26%  Similarity=0.233  Sum_probs=25.9

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +++.++++.+| +.+|+|||||||||++ .+|.
T Consensus        12 ~~~~~~~~~~~-~~~i~G~NGsGKS~ll-~Ai~   42 (270)
T cd03242          12 YAELELEFEPG-VTVLVGENAQGKTNLL-EAIS   42 (270)
T ss_pred             cceeEEecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence            56677777776 7999999999999998 7764

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00416 sms DNA repair protein RadA

Probab=98.87  E-value=7.6e-09  Score=95.90  Aligned_cols=137  Identities=15%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcchhHHHh
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      --+++|+++.|.|++|+|||||++.++..+.-.|.++.++....     ..|....++..+...++....+   ..+...
T Consensus        89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~---~~I~~~  165 (454)
T TIGR00416        89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNW---EQICAN  165 (454)
T ss_pred             CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCH---HHHHHH
Confidence            36899999999999999999999555444444455554443221     1111111222221111111111   111111


Q ss_pred             hchhhhccCcEEEEcCccC---------------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce
Q 026304          101 LGDDAYAKLDVIGIDEAQF---------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV  165 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~---------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i  165 (240)
                      +   .-.+|+++++|.-++               ..+++..|.+++++.|.|+++++|....-  .+.....+..++|.|
T Consensus       166 i---~~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg--~~aG~~~le~lvD~V  240 (454)
T TIGR00416       166 I---EEENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEG--SIAGPKVLEHMVDTV  240 (454)
T ss_pred             H---HhcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCC--ccCCcccEeeeceEE
Confidence            1   125899999997643               12344456677666899999999976531  111123347789999


Q ss_pred             eeecc
Q 026304          166 TKLTA  170 (240)
Q Consensus       166 ~~l~~  170 (240)
                      +.|+.
T Consensus       241 I~Le~  245 (454)
T TIGR00416       241 LYFEG  245 (454)
T ss_pred             EEEec
Confidence            99875

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.81  E-value=1.4e-08  Score=83.17  Aligned_cols=114  Identities=16%  Similarity=0.046  Sum_probs=65.2

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeeccchhc--ccCCCeEEEccCc--eecceecCcchhH
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDT--RYAIDSVVTHDGA--KLPCWALPELTSF   97 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~~~~~--~~~~~~~v~q~~~--~~~~~~~~~~~~~   97 (240)
                      -+.+.+.+|+.++|+||||||||||+ +.|.++.... ..+..-.+....  .....++.++...  ..+..+..+..  
T Consensus        17 ~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--   93 (186)
T cd01130          17 YLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL--   93 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH--
Confidence            34567899999999999999999999 9999974332 222221111110  0111233333221  11122222222  


Q ss_pred             HHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCE-EEEEecChh
Q 026304           98 RQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKT-VVVAGLDGD  146 (240)
Q Consensus        98 ~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~t-vi~vtHd~~  146 (240)
                          ...+-.+|++++++|-...+ ..++++. +. .|.. ++.+-|-.+
T Consensus        94 ----~~~lR~~pd~i~igEir~~e-a~~~~~a-~~-tGh~g~~~T~Ha~s  136 (186)
T cd01130          94 ----RSALRMRPDRIIVGEVRGGE-ALDLLQA-MN-TGHPGGMTTIHANS  136 (186)
T ss_pred             ----HHHhccCCCEEEEEccCcHH-HHHHHHH-Hh-cCCCCceeeecCCC
Confidence                22234689999999996643 4565554 44 5776 777777544

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.76  E-value=2.5e-08  Score=84.10  Aligned_cols=40  Identities=18%  Similarity=0.113  Sum_probs=28.6

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEee
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMI   65 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~   65 (240)
                      --+++|+++.|.||+|+|||||...++......|..+..+
T Consensus        15 GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~i   54 (229)
T TIGR03881        15 GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYV   54 (229)
T ss_pred             CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence            4689999999999999999999834443322345554443

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=98.75  E-value=1.7e-08  Score=84.55  Aligned_cols=51  Identities=14%  Similarity=0.189  Sum_probs=35.9

Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      ....++++||||..      +..+.++|+++.+  +.-+|++||+....           ..||+.+.+.
T Consensus       156 ~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~~~~-----------~~a~~~~~v~  212 (220)
T PF02463_consen  156 YKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNPEMF-----------EDADKLIGVT  212 (220)
T ss_dssp             CS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-HHHH-----------TT-SEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccc--cccccccccccccc-----------cccccccccc
Confidence            46788999999966      4578888888764  47799999998776           7788887654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.74  E-value=2.4e-08  Score=99.05  Aligned_cols=120  Identities=18%  Similarity=0.153  Sum_probs=65.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccC---ceecceec--
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDG---AKLPCWAL--   91 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~---~~~~~~~~--   91 (240)
                      -+|+++. ..+.++.|.|||++||||+| |.++-..+   -|-.+..    ...+.+.. .+..+.+   .+....+-  
T Consensus       598 pnd~~l~-~~~~~~iiTGpN~~GKSt~l-r~v~l~~ilAq~G~~VPa----~~a~i~~~d~I~triga~d~i~~g~STF~  671 (854)
T PRK05399        598 PNDCDLD-EERRLLLITGPNMAGKSTYM-RQVALIVLLAQIGSFVPA----ESARIGIVDRIFTRIGASDDLASGRSTFM  671 (854)
T ss_pred             ecceeeC-CCCcEEEEECCCCCCcHHHH-HHHHHHHHHHhcCCceec----cceEecccCeeeeccCcccccccCcccHH
Confidence            3566666 66789999999999999999 98765422   2222211    11111110 1111111   11111110  


Q ss_pred             CcchhHHHhhchhhhccCcEEEEcCc---cC----hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           92 PELTSFRQKLGDDAYAKLDVIGIDEA---QF----FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        92 ~~~~~~~~~~~~~l~~~p~lllLDEP---~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      .+.......+  ..+.++.++|+|||   |+    ....+.++..+.+..+.+++++||+.+..
T Consensus       672 ~E~~~~~~il--~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~  733 (854)
T PRK05399        672 VEMTETANIL--NNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELT  733 (854)
T ss_pred             HHHHHHHHHH--HhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHH
Confidence            0111111111  12468999999999   66    23456667777763358999999995544

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.73  E-value=6.7e-08  Score=86.66  Aligned_cols=111  Identities=21%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeec-cchhcccCCCeEEEccCceecceecCcchhHHHhhchhh
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIK-SSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA  105 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~-~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l  105 (240)
                      .++.++.|.||+||||||++ +.+.+...  .+..+.... +..........++.|...      ......+...+...+
T Consensus       120 ~~~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~ev------g~~~~~~~~~l~~~l  192 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREV------GLDTLSFANALRAAL  192 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhhhccCccceEEcccc------CCCCcCHHHHHHHhh
Confidence            46889999999999999999 88877432  123333332 111111111122222111      011123333344456


Q ss_pred             hccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      -++|++|++||+...... ....+.+. .|.+|+.+.|-.+-.
T Consensus       193 r~~pd~i~vgEird~~~~-~~~l~aa~-tGh~v~~T~Ha~~~~  233 (343)
T TIGR01420       193 REDPDVILIGEMRDLETV-ELALTAAE-TGHLVFGTLHTNSAA  233 (343)
T ss_pred             ccCCCEEEEeCCCCHHHH-HHHHHHHH-cCCcEEEEEcCCCHH
Confidence            689999999999654333 33334455 699999999986554

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.71  E-value=2.6e-09  Score=98.16  Aligned_cols=29  Identities=17%  Similarity=0.007  Sum_probs=28.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLR   50 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~   50 (240)
                      |++||+++++||+++|+||||||||||| +
T Consensus        22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLL-r   50 (504)
T TIGR03238        22 LVKFNKELPSSSLLFLCGSSGDGKSEIL-A   50 (504)
T ss_pred             HhCCceeecCCCEEEEECCCCCCHHHHH-h
Confidence            8899999999999999999999999999 8

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.70  E-value=4.7e-08  Score=88.44  Aligned_cols=136  Identities=18%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcchhHHHhh
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPELTSFRQKL  101 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~  101 (240)
                      -+.+|+++.|.|++|+|||||++.+...+.-.|.++.++....     ..|....++..+...++....   ...+...+
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~i  154 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETN---LEDILASI  154 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCc---HHHHHHHH
Confidence            5889999999999999999999444433333445555443211     111111121111111111111   11121211


Q ss_pred             chhhhccCcEEEEcCccCh---------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcccee
Q 026304          102 GDDAYAKLDVIGIDEAQFF---------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVT  166 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~~---------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~  166 (240)
                         .-.+|+++++|+-++.               .++...|.+++++.++++++++|-...-  .+.....|..++|.++
T Consensus       155 ---~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g--~~aG~~~leh~vD~Vi  229 (372)
T cd01121         155 ---EELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEG--SIAGPKVLEHMVDTVL  229 (372)
T ss_pred             ---HhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCC--cccCcccchhhceEEE
Confidence               1358999999997441               1344556677766899999999954321  1222345578899998


Q ss_pred             eecc
Q 026304          167 KLTA  170 (240)
Q Consensus       167 ~l~~  170 (240)
                      .++.
T Consensus       230 ~le~  233 (372)
T cd01121         230 YFEG  233 (372)
T ss_pred             EEEc
Confidence            8864

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK09183 transposase/IS protein; Provisional

Probab=98.64  E-value=7.2e-08  Score=83.19  Aligned_cols=138  Identities=14%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ   99 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~   99 (240)
                      |.+++| +++|+.+.|+||+|+|||+|+ .+|... ...|..+...+......    .+.       ... ....  +..
T Consensus        93 L~~~~~-i~~~~~v~l~Gp~GtGKThLa-~al~~~a~~~G~~v~~~~~~~l~~----~l~-------~a~-~~~~--~~~  156 (259)
T PRK09183         93 LRSLSF-IERNENIVLLGPSGVGKTHLA-IALGYEAVRAGIKVRFTTAADLLL----QLS-------TAQ-RQGR--YKT  156 (259)
T ss_pred             HhcCCc-hhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEEeHHHHHH----HHH-------HHH-HCCc--HHH
Confidence            667888 999999999999999999999 888543 23455544332111000    000       000 0000  101


Q ss_pred             hhchhhhccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc-chHHHHHhhccceeeecce
Q 026304          100 KLGDDAYAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF-GSVLDIIPLADTVTKLTAR  171 (240)
Q Consensus       100 ~~~~~l~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f-~~~~~L~~~ad~i~~l~~~  171 (240)
                      .+. .....|+++++||-..       ...+.+++....+ .+.+||.+-..+....+.| +....-.++.||++.....
T Consensus       157 ~~~-~~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~-~~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~~~~~  234 (259)
T PRK09183        157 TLQ-RGVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYE-KGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHV  234 (259)
T ss_pred             HHH-HHhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHh-cCcEEEecCCCHHHHHHHhcCchhHHHHHHHHHhcceEE
Confidence            111 1246899999999844       1246676666544 4555444444566666666 3332234566777644434


Q ss_pred             eeccC
Q 026304          172 CELCG  176 (240)
Q Consensus       172 ~~~~g  176 (240)
                      +...|
T Consensus       235 i~~~g  239 (259)
T PRK09183        235 VQIKG  239 (259)
T ss_pred             EeecC
Confidence            44444

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.64  E-value=5.1e-08  Score=82.97  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=56.5

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCC-CeEEEccCceecceecC-cchhH
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAI-DSVVTHDGAKLPCWALP-ELTSF   97 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~-~~~v~q~~~~~~~~~~~-~~~~~   97 (240)
                      ++.+.-....++.|.|||.+||||+| |.++-..+   -|--+   + ......+. ..+..+-+   ..-++. +...|
T Consensus        35 di~~~~~~~~~~iiTGpN~sGKSt~l-k~i~~~~ilaq~G~~V---P-A~~~~i~~~d~I~t~~~---~~d~~~~~~S~F  106 (235)
T PF00488_consen   35 DIELSNNKSRIIIITGPNMSGKSTFL-KQIGLIVILAQIGCFV---P-AESAEIPIFDRIFTRIG---DDDSIESGLSTF  106 (235)
T ss_dssp             EEEESSSSSSEEEEESSTTSSHHHHH-HHHHHHHHHHTTT--B---S-SSEEEEE--SEEEEEES------SSTTSSSHH
T ss_pred             eeecCCCceeEEEEeCCCccchhhHH-HHHHHHhhhhhcCcee---e-ecccccccccEEEeecc---cccccccccccH
Confidence            44443333459999999999999999 98854322   12111   1 10011000 01111100   000111 11111


Q ss_pred             HHhh---ch--hhhccCcEEEEcCc---cCh----HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           98 RQKL---GD--DAYAKLDVIGIDEA---QFF----EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        98 ~~~~---~~--~l~~~p~lllLDEP---~~~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ...+   ..  ..+.+..++|+||+   |+-    .-...++..+.++.+..++++||+.+..
T Consensus       107 ~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~  169 (235)
T PF00488_consen  107 MAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELA  169 (235)
T ss_dssp             HHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGG
T ss_pred             HHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhH
Confidence            1111   11  12456779999999   331    2345556666652477899999999775

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.59  E-value=9.9e-08  Score=82.37  Aligned_cols=160  Identities=17%  Similarity=0.102  Sum_probs=90.8

Q ss_pred             EEEcceeEee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----ccc-C-CCeEEE
Q 026304           11 VTTNQVNSGR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----TRY-A-IDSVVT   80 (240)
Q Consensus        11 l~~~~ls~~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~~~-~-~~~~v~   80 (240)
                      |..+.|+.++  |+.+.--+.+|+++.|.||+|+|||||+..++...... |..+..++-...     .+. . ..++-+
T Consensus         8 ~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~   87 (271)
T cd01122           8 LSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKRL   87 (271)
T ss_pred             ccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCCc
Confidence            3344566666  88887789999999999999999999984444333333 666655542210     010 0 000000


Q ss_pred             c----------------------cCcee--cceecCcchhHHHhhchh-hhccCcEEEEcCccC--------------hH
Q 026304           81 H----------------------DGAKL--PCWALPELTSFRQKLGDD-AYAKLDVIGIDEAQF--------------FE  121 (240)
Q Consensus        81 q----------------------~~~~~--~~~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~--------------~~  121 (240)
                      +                      .+.++  ..........+...+... .-.+|+++++|..+.              ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~  167 (271)
T cd01122          88 HLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALD  167 (271)
T ss_pred             ccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHH
Confidence            0                      00000  000000011111111111 124799999998744              12


Q ss_pred             HHHHHHHHHHhcCCCEEEEEecChhhhh------------cccchHHHHHhhccceeeecc
Q 026304          122 DLYEFCCNAADHDGKTVVVAGLDGDYLR------------RSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       122 ~i~~~l~~l~~~~g~tvi~vtHd~~~~~------------~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +++..|++++++.++||++++|-.....            ..+..+..+...||-++.|..
T Consensus       168 ~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~i~~~aD~vi~l~r  228 (271)
T cd01122         168 EIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAAIGQLADNVIALER  228 (271)
T ss_pred             HHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHhHhhhccEEEEEEe
Confidence            4556677777778999999998654321            124456677899999999976

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.58  E-value=1e-07  Score=94.83  Aligned_cols=65  Identities=23%  Similarity=0.190  Sum_probs=55.2

Q ss_pred             hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304          105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA  170 (240)
Q Consensus       105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~  170 (240)
                      ++.+|  +++|||||++      ...++++|+++.+ .|.|||+++||++++          . .||++++|      ++
T Consensus       502 L~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~~i----------~-~aD~vi~LgpgaG~~~  569 (924)
T TIGR00630       502 IGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEETI----------R-AADYVIDIGPGAGIHG  569 (924)
T ss_pred             HhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHHHH----------h-hCCEEEEecccccCCC
Confidence            45665  8999999988      4579999999987 699999999999988          5 89999999      67


Q ss_pred             -eeeccCCccee
Q 026304          171 -RCELCGKRAFF  181 (240)
Q Consensus       171 -~~~~~g~~~~~  181 (240)
                       ++++.|+++.+
T Consensus       570 G~Iv~~g~~~el  581 (924)
T TIGR00630       570 GEVVASGTPEEI  581 (924)
T ss_pred             CEEeeccCHHHH
Confidence             88888887654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.57  E-value=1.2e-07  Score=94.67  Aligned_cols=65  Identities=22%  Similarity=0.207  Sum_probs=55.6

Q ss_pred             hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304          105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA  170 (240)
Q Consensus       105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~  170 (240)
                      +..+|  ++++||||++      ...++++|+++++ .|.|||+++||++++          . .||+|++|      ++
T Consensus       504 L~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~~i----------~-~aD~vi~LgpgaG~~~  571 (943)
T PRK00349        504 IGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDEDTI----------R-AADYIVDIGPGAGVHG  571 (943)
T ss_pred             HhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------H-hCCEEEEeccccCCCC
Confidence            45675  9999999988      4579999999986 799999999999988          5 69999999      77


Q ss_pred             -eeeccCCccee
Q 026304          171 -RCELCGKRAFF  181 (240)
Q Consensus       171 -~~~~~g~~~~~  181 (240)
                       ++++.|+++.+
T Consensus       572 G~iv~~g~~~e~  583 (943)
T PRK00349        572 GEVVASGTPEEI  583 (943)
T ss_pred             CEEeeccCHHHH
Confidence             88888887654

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.52  E-value=3.8e-07  Score=84.49  Aligned_cols=141  Identities=17%  Similarity=0.089  Sum_probs=77.0

Q ss_pred             ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcc
Q 026304           21 DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPEL   94 (240)
Q Consensus        21 l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~   94 (240)
                      |+.+ .--+.+|+++.|.|+.|+|||||+++++....-.|.++.++....     ..|....++-.+.-.+...   .+.
T Consensus        69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e---~~l  145 (446)
T PRK11823         69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAE---TNL  145 (446)
T ss_pred             HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCC---CCH
Confidence            4443 346889999999999999999999444433333455554443221     0111001111111001111   111


Q ss_pred             hhHHHhhchhhhccCcEEEEcCccCh---------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHH
Q 026304           95 TSFRQKLGDDAYAKLDVIGIDEAQFF---------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDII  159 (240)
Q Consensus        95 ~~~~~~~~~~l~~~p~lllLDEP~~~---------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~  159 (240)
                      ..+...+   .-.+|+++++|+.++.               .++...|.+++++.+.++++++|-...- . +.....+.
T Consensus       146 ~~i~~~i---~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hvtk~~-~-~ag~~~le  220 (446)
T PRK11823        146 EAILATI---EEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHVTKEG-A-IAGPRVLE  220 (446)
T ss_pred             HHHHHHH---HhhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeccCCC-C-cCCcchhh
Confidence            1111111   1258999999998641               1344456667666899999999954321 1 11123457


Q ss_pred             hhccceeeec
Q 026304          160 PLADTVTKLT  169 (240)
Q Consensus       160 ~~ad~i~~l~  169 (240)
                      .++|.++.+.
T Consensus       221 hlvD~Vi~le  230 (446)
T PRK11823        221 HMVDTVLYFE  230 (446)
T ss_pred             hhCeEEEEEE
Confidence            7889888776

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.50  E-value=7.1e-07  Score=67.36  Aligned_cols=26  Identities=42%  Similarity=0.598  Sum_probs=22.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .+..+.|+||+|+||||++ +.++...
T Consensus         1 ~~~~~~l~G~~G~GKTtl~-~~l~~~~   26 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLA-RALAREL   26 (148)
T ss_pred             CCCEEEEECCCCCcHHHHH-HHHHhcc
Confidence            3678999999999999999 8887653

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.48  E-value=1.7e-06  Score=85.73  Aligned_cols=68  Identities=19%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ..+|.++++|||..       ...+.+.++++++ .|.+++++||+++.+.+. +....+...|++.++|.+ +....
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d~~~s-~~a~~i~~~~~t~i~L~n~~a~~~  725 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISDAERS-GIIDVLKESCPTKICLPNGAAREP  725 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHhcC-chHHHHHhcCCeEEECCCcccccc
Confidence            46899999999955       3467888888876 689999999999987332 445555688999999987 65433

>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.47  E-value=2.4e-06  Score=77.78  Aligned_cols=136  Identities=17%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc-----hhCCceEEeeccch-hcccCCCeEEEc--------------cCce
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE-----SDNGRNIAMIKSSK-DTRYAIDSVVTH--------------DGAK   85 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-----~~~g~~i~~~~~~~-~~~~~~~~~v~q--------------~~~~   85 (240)
                      +-|++| ++.|+|.+--|||||| +.|..-     .=+|++...-.+.. ..|.-....|..              +...
T Consensus       240 MGIp~G-vTlIvGGGyHGKSTLL-~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~  317 (448)
T PF09818_consen  240 MGIPKG-VTLIVGGGYHGKSTLL-EALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTC  317 (448)
T ss_pred             EeeCCc-EEEEECCCCccHHHHH-HHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCc
Confidence            458899 9999999999999999 888542     12455433222111 011000000110              1111


Q ss_pred             ecceecCcchhHHHhhchhhhccCcEEEEcCccC------hH---------------HHHHHHHHHHhcCCCEEEEEecC
Q 026304           86 LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF------FE---------------DLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~------~~---------------~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      |......+.....+.+...+-...++||+||=|+      ++               -+.+.++++.++.|.+.|+|+=-
T Consensus       318 FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg  397 (448)
T PF09818_consen  318 FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG  397 (448)
T ss_pred             ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc
Confidence            2222223333444444445667899999999866      11               24566677766689877777665


Q ss_pred             hhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          145 GDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       145 ~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      ....          ...||+|+.|++ ++.
T Consensus       398 sgdy----------~~vAD~Vi~Md~Y~~~  417 (448)
T PF09818_consen  398 SGDY----------FDVADRVIMMDEYRPK  417 (448)
T ss_pred             chhh----------HhhCCEEEEecCccch
Confidence            5555          799999999998 654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.46  E-value=1.5e-07  Score=63.20  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             ecCCCCcccC-cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNS-GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~-Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++.++++.+ |+++.|.|||||||||++ ..+.-+
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTll-DAi~~~   46 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLL-DAIQTV   46 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence            5667788875 579999999999999999 877543

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=98.40  E-value=1.3e-06  Score=73.41  Aligned_cols=142  Identities=18%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccCCCeEEEc----cCceecceecCcc--
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYAIDSVVTH----DGAKLPCWALPEL--   94 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~~~~~v~q----~~~~~~~~~~~~~--   94 (240)
                      --+++|.++.|.|+.|+|||++.++++....-.|..+..+.....     .+....++-.+    ....+-.....+.  
T Consensus        11 gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   90 (224)
T TIGR03880        11 GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKT   90 (224)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHh
Confidence            358899999999999999999985665543344666554432211     01000011000    0000000000000  


Q ss_pred             --hhHHHhhchh-hhccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc-hHHHHH
Q 026304           95 --TSFRQKLGDD-AYAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG-SVLDII  159 (240)
Q Consensus        95 --~~~~~~~~~~-l~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~-~~~~L~  159 (240)
                        ..+...+... .-..++.+++|=.+.           +..+.++++.+++ .|.|+++++|....  ++.. ....+.
T Consensus        91 ~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~~~--~~~~~~~~~~~  167 (224)
T TIGR03880        91 SLNRIKNELPILIKELGASRVVIDPISLLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEADKT--NVFASKYGLIE  167 (224)
T ss_pred             hHHHHHHHHHHHHHHhCCCEEEEcChHHHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEcccCC--CCCccCCCceE
Confidence              0111111110 123688999994332           2356777778876 79999999996421  0000 011237


Q ss_pred             hhccceeeecc
Q 026304          160 PLADTVTKLTA  170 (240)
Q Consensus       160 ~~ad~i~~l~~  170 (240)
                      .+||.|+.|+.
T Consensus       168 ~l~D~vI~L~~  178 (224)
T TIGR03880       168 YLADGVIILKY  178 (224)
T ss_pred             EEEeEEEEEee
Confidence            78999999964

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.38  E-value=6.4e-07  Score=81.07  Aligned_cols=55  Identities=25%  Similarity=0.080  Sum_probs=40.3

Q ss_pred             hccCcEEEEcCccCh-----H-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          106 YAKLDVIGIDEAQFF-----E-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       106 ~~~p~lllLDEP~~~-----~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      -..+++.+.|||.+.     . ..-..+++..-+.++|-++|.||.-.+          --+|||+++...
T Consensus       472 GKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIma----------TYladrvivf~G  532 (592)
T KOG0063|consen  472 GKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMA----------TYLADRVIVFEG  532 (592)
T ss_pred             CCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHH----------HhhcceeEEEec
Confidence            457899999999661     1 223344554433678999999998777          778999998875

>PRK13764 ATPase; Provisional

Probab=98.37  E-value=3.5e-06  Score=80.30  Aligned_cols=136  Identities=17%  Similarity=0.105  Sum_probs=74.8

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAY  106 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~  106 (240)
                      ...+..+.|.||.||||||++ +.+.... -.++.+..+.........  ..+.|    +..  ...  .+.......+.
T Consensus       254 ~~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El~~~--~~i~q----~~~--~~~--~~~~~~~~lLR  322 (602)
T PRK13764        254 EERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDLQVP--PEITQ----YSK--LEG--SMEETADILLL  322 (602)
T ss_pred             HhcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccccCC--CcceE----Eee--ccc--cHHHHHHHHHh
Confidence            345667899999999999999 8887653 334444333211111110  11111    100  000  11111112256


Q ss_pred             ccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc------hHHHHHhhccceeeecc-ee--eccCC
Q 026304          107 AKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG------SVLDIIPLADTVTKLTA-RC--ELCGK  177 (240)
Q Consensus       107 ~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~------~~~~L~~~ad~i~~l~~-~~--~~~g~  177 (240)
                      .+||++++||.-.. +-++++..++. .|..++.+-|-.+-. +.+.      ....+..++|+|+.+++ ++  +++.+
T Consensus       323 ~rPD~IivGEiRd~-Et~~~~~~l~~-ag~GvigTlHA~sa~-~Ai~Rl~~~v~lg~i~~iID~IV~I~~G~I~~v~~~~  399 (602)
T PRK13764        323 VRPDYTIYDEMRKT-EDFKIFADMRL-AGVGMVGVVHATRPI-DAIQRFIGRVELGMIPQIVDTVIFIEDGEVSKVYDLE  399 (602)
T ss_pred             hCCCEEEECCCCCH-HHHHHHHHHHH-cCCeEEEEECCCCHH-HHHHHHHhhhhhchHHHhhcEEEEEeCCEEEEEEeee
Confidence            79999999999553 34566666655 577788888822111 0011      11122678999999998 66  44444

>cd01394 radB RadB

Probab=98.34  E-value=1.2e-06  Score=73.12  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--hcccC-CCeEEEc---cCc-eecceecCcchhHHH
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--DTRYA-IDSVVTH---DGA-KLPCWALPELTSFRQ   99 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~~~~~-~~~~v~q---~~~-~~~~~~~~~~~~~~~   99 (240)
                      -+++|.++.|.|++|||||||.+.++......|..+..+....  ..+.. ..+...+   ... .+......+......
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (218)
T cd01394          15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQ   94 (218)
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHH
Confidence            5889999999999999999998555544334455555442211  00000 0000000   000 011111111111111


Q ss_pred             hhchhhhccCcEEEEcCccCh---------------HHH---HHHHHHHHhcCCCEEEEEecChhhhhc----ccchHHH
Q 026304          100 KLGDDAYAKLDVIGIDEAQFF---------------EDL---YEFCCNAADHDGKTVVVAGLDGDYLRR----SFGSVLD  157 (240)
Q Consensus       100 ~~~~~l~~~p~lllLDEP~~~---------------~~i---~~~l~~l~~~~g~tvi~vtHd~~~~~~----~f~~~~~  157 (240)
                      .+....-.+++++++|=.++.               .++   +..|+.++++.+++||+++|-......    +.++ ..
T Consensus        95 ~~~~~~~~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~~~~~~~~~~~p~~g-~~  173 (218)
T cd01394          95 ETETFADEKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITNQVYSDVGSGSVRPLGG-HT  173 (218)
T ss_pred             HHHHHHhcCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCEEcCCCCcccccCC-cc
Confidence            111112235999999987541               122   233566766689999999985432210    0000 12


Q ss_pred             HHhhccceeeecc
Q 026304          158 IIPLADTVTKLTA  170 (240)
Q Consensus       158 L~~~ad~i~~l~~  170 (240)
                      +..++|.++.|+.
T Consensus       174 ~~~~~d~~i~l~~  186 (218)
T cd01394         174 LEHWSKVILRLEK  186 (218)
T ss_pred             hhcceeEEEEEEE
Confidence            4667788888874

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.34  E-value=8.6e-07  Score=81.39  Aligned_cols=45  Identities=18%  Similarity=0.090  Sum_probs=36.2

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .++-+.++..|      ++. .|.+.+|+.++|+|+||+|||||+ ++|++..
T Consensus       130 ~~~r~~i~~~l~TGiraID~-ll~I~~Gqri~I~G~sG~GKTtLl-~~Ia~~~  180 (432)
T PRK06793        130 AFEREEITDVFETGIKSIDS-MLTIGIGQKIGIFAGSGVGKSTLL-GMIAKNA  180 (432)
T ss_pred             chheechhhccCCCCEEEec-cceecCCcEEEEECCCCCChHHHH-HHHhccC
Confidence            34555555544      455 599999999999999999999999 9999864

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.31  E-value=2.1e-06  Score=80.43  Aligned_cols=143  Identities=12%  Similarity=0.002  Sum_probs=75.7

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHc-CchhCCceEEeeccch-----hcccCCCeEEEcc----Ccee-cc------
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIR-SESDNGRNIAMIKSSK-----DTRYAIDSVVTHD----GAKL-PC------   88 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~-gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~----~~~~-~~------   88 (240)
                      =-+++|..+.|.||+|||||||.++.+. |..-.|.+...+.-..     .......++-.+.    +.+. ..      
T Consensus        16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~   95 (484)
T TIGR02655        16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPE   95 (484)
T ss_pred             CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhc
Confidence            3589999999999999999999955554 3333255544332111     0000001111110    0000 00      


Q ss_pred             ----eecCcchhHHHhhchh-hhccCcEEEEc--Cc-----cC----hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc
Q 026304           89 ----WALPELTSFRQKLGDD-AYAKLDVIGID--EA-----QF----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF  152 (240)
Q Consensus        89 ----~~~~~~~~~~~~~~~~-l~~~p~lllLD--EP-----~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f  152 (240)
                          ....+...+...+... .-.+++.+++|  -+     ..    +..++++++.+++ .|.|+++++|+.+..... 
T Consensus        96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~-~g~TvLLtsh~~~~~~~~-  173 (484)
T TIGR02655        96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQ-IGVTTVMTTERIEEYGPI-  173 (484)
T ss_pred             cccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHH-CCCEEEEEecCccccccc-
Confidence                0001111122221111 12478888888  22     11    3467778888876 799999999998653110 


Q ss_pred             chHHHHHhhccceeeecc
Q 026304          153 GSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       153 ~~~~~L~~~ad~i~~l~~  170 (240)
                      ........+||.|+.|+.
T Consensus       174 ~~~~~~e~laDgVI~L~~  191 (484)
T TIGR02655       174 ARYGVEEFVSDNVVILRN  191 (484)
T ss_pred             ccCCceeEeeeeEEEEEE
Confidence            000011568999999985

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=98.30  E-value=3.7e-06  Score=75.80  Aligned_cols=110  Identities=23%  Similarity=0.176  Sum_probs=62.5

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeec-cchhc---ccCCCeEEEccCceecceecCcchhHHHh
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIK-SSKDT---RYAIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~-~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      ++|.+++|+||+||||||+| +.|.+...    .+..+.... +....   .....+++.|...  +    .+...+...
T Consensus       132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~----~~~~~~~~~  204 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLL-AAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--P----RHLNNFAAG  204 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHH-HHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--c----ccccCHHHH
Confidence            48899999999999999999 99988632    123333221 11110   0001134444321  0    011123333


Q ss_pred             hchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304          101 LGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY  147 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~  147 (240)
                      +...+-++|+++++.|.-..+.+...+ +.+. .|..|+-+-|-.+.
T Consensus       205 l~~aLR~~Pd~i~vGEiRd~et~~~al-~aa~-tGh~v~tTlHa~~~  249 (358)
T TIGR02524       205 VRNALRRKPHAILVGEARDAETISAAL-EAAL-TGHPVYTTLHSSGV  249 (358)
T ss_pred             HHHHhccCCCEEeeeeeCCHHHHHHHH-HHHH-cCCcEEEeeccCCH
Confidence            333455799999999975443333444 4444 68888888886543

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG3044 Predicted ATPase of the ABC class [General function prediction only]

Probab=98.29  E-value=2.7e-06  Score=76.63  Aligned_cols=134  Identities=20%  Similarity=0.140  Sum_probs=78.4

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-----hCCceEEeeccch-hcccCCCeEEE-ccCce-ecce------
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-----DNGRNIAMIKSSK-DTRYAIDSVVT-HDGAK-LPCW------   89 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-----~~g~~i~~~~~~~-~~~~~~~~~v~-q~~~~-~~~~------   89 (240)
                      .-+-|++| ++.|+|+|--|||||+ ..|..-.     =+|+....-.... .....-...++ ++-.+ +..+      
T Consensus       236 ~gmgIp~g-it~ItG~nfhGKTTLl-~Aie~gvdnHipGDGRE~vVTd~~lakaeae~gr~vsg~D~SlFi~~LPggkdT  313 (554)
T COG3044         236 VGMGIPQG-ITLITGGNFHGKTTLL-TAIERGVDNHIPGDGRERVVTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDT  313 (554)
T ss_pred             eccCCCcc-eEEEecCCccchhHHH-HHHHhcccccCCCCCceEEEehhhhhhhhcccceeeeccchHHHHHhCCCCCCC
Confidence            44678999 9999999999999999 8885531     2444322211110 00100001111 11111 1111      


Q ss_pred             ------ecCcchhHHHhhchhhhccCcEEEEcCccC-------------------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304           90 ------ALPELTSFRQKLGDDAYAKLDVIGIDEAQF-------------------FEDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus        90 ------~~~~~~~~~~~~~~~l~~~p~lllLDEP~~-------------------~~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                            +..+...+..++...+-...+.||+||-++                   ...+.+.+.++.. .+.++|.+|--
T Consensus       314 p~fvtgdASGStsmAa~IQeaiEagak~lliDED~sAtNllvrdVlake~eG~rtl~pl~dei~s~~g-d~iS~iaVtgg  392 (554)
T COG3044         314 PDFVTGDASGSTSMAAWIQEAIEAGAKTLLIDEDTSATNLLVRDVLAKESEGERTLTPLVDEIGSLRG-DLISTIAVTGG  392 (554)
T ss_pred             cccccCCCCchhHHHHHHHHHHHcCCcEEEEccCcchhheehhhHHHHHhcCcccchHHHHhhhhhcc-CceEEEEEecc
Confidence                  112233344444444567899999999866                   1134444444443 35888888888


Q ss_pred             hhhhhcccchHHHHHhhccceeeecc
Q 026304          145 GDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       145 ~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++..          ...+||+++|++
T Consensus       393 lddl----------la~aDRaIvMeD  408 (554)
T COG3044         393 LDDL----------LAVADRAIVMED  408 (554)
T ss_pred             chhh----------hhhcceEEEecc
Confidence            8777          899999999997

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.27  E-value=2.3e-06  Score=71.34  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+||||||||+.+.+.|.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~~~   33 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLTGE   33 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999994467664

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.27  E-value=2.9e-06  Score=64.70  Aligned_cols=101  Identities=24%  Similarity=0.140  Sum_probs=55.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcch---hHHHhhchhh
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELT---SFRQKLGDDA  105 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~---~~~~~~~~~l  105 (240)
                      .+..+.|+||.|+||||++ +.+..... .+..+.........               .........   ..........
T Consensus        18 ~~~~v~i~G~~G~GKT~l~-~~i~~~~~~~~~~v~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~   81 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLA-RAIANELFRPGAPFLYLNASDLL---------------EGLVVAELFGHFLVRLLFELAE   81 (151)
T ss_pred             CCCeEEEECCCCCCHHHHH-HHHHHHhhcCCCCeEEEehhhhh---------------hhhHHHHHhhhhhHhHHHHhhc
Confidence            5788999999999999999 88876432 12222222111000               000000000   0001111123


Q ss_pred             hccCcEEEEcCccC-----hHHHHHHHHHHHh----cCCCEEEEEecChh
Q 026304          106 YAKLDVIGIDEAQF-----FEDLYEFCCNAAD----HDGKTVVVAGLDGD  146 (240)
Q Consensus       106 ~~~p~lllLDEP~~-----~~~i~~~l~~l~~----~~g~tvi~vtHd~~  146 (240)
                      ..++.+|++||...     ...+.+.+.....    ..+..+|+++++..
T Consensus        82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            46789999999974     2345666665542    14788999998765

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.26  E-value=3e-06  Score=70.05  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=24.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|++++|+||+|||||||+ +.|.+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~-~~l~~~   28 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLV-KALLER   28 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence            58999999999999999999 999885

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.26  E-value=2.2e-05  Score=65.19  Aligned_cols=142  Identities=17%  Similarity=0.102  Sum_probs=86.1

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcc----------cCCCeEEEccC-ceecc--eec
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTR----------YAIDSVVTHDG-AKLPC--WAL   91 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~----------~~~~~~v~q~~-~~~~~--~~~   91 (240)
                      .--|+-|.++.|-|+||+|||-|..+.+.|+..+|..+.......-.+          +....+..... ..++.  ..+
T Consensus        22 GGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~  101 (235)
T COG2874          22 GGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPV  101 (235)
T ss_pred             cCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccc
Confidence            344788999999999999999999899999988998888765432111          00000000000 00110  011


Q ss_pred             Ccch----hHHHhh-chhhhccCcEEEEcCccC---------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304           92 PELT----SFRQKL-GDDAYAKLDVIGIDEAQF---------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD  157 (240)
Q Consensus        92 ~~~~----~~~~~~-~~~l~~~p~lllLDEP~~---------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~  157 (240)
                      ..+.    .+...+ ......+-+++++|=-+.         ..+++..++.+.+ .|++|+++-|--.+-+   +...+
T Consensus       102 ~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d-~gKvIilTvhp~~l~e---~~~~r  177 (235)
T COG2874         102 NWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSD-LGKVIILTVHPSALDE---DVLTR  177 (235)
T ss_pred             ccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHh-CCCEEEEEeChhhcCH---HHHHH
Confidence            1111    111111 111256888999996533         2367777888887 7999999988654431   24566


Q ss_pred             HHhhccceeeecc
Q 026304          158 IIPLADTVTKLTA  170 (240)
Q Consensus       158 L~~~ad~i~~l~~  170 (240)
                      +...||-.+.|+.
T Consensus       178 irs~~d~~l~L~~  190 (235)
T COG2874         178 IRSACDVYLRLRL  190 (235)
T ss_pred             HHHhhheeEEEEh
Confidence            6788998887764

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=98.25  E-value=2e-06  Score=85.24  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=59.4

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCC-eEEEccC---ceecceec--Cc
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAID-SVVTHDG---AKLPCWAL--PE   93 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~-~~v~q~~---~~~~~~~~--~~   93 (240)
                      |+++. ....++.|.|||.+||||+| |.++=..+   -|--+    |....+.+.. .+..+.+   .+....+-  .+
T Consensus       585 di~l~-~~~~~~iITGPNmgGKSt~l-rqvali~imAq~G~~V----PA~~a~i~~~D~Iftrig~~d~i~~g~STF~~E  658 (840)
T TIGR01070       585 DLEMA-HNRRMLLITGPNMGGKSTYM-RQTALIALLAQIGSFV----PAESAELPLFDRIFTRIGASDDLASGRSTFMVE  658 (840)
T ss_pred             eeecC-CCccEEEEECCCCCCchHHH-HHHHHHHHHHhcCCCc----cchheEeccccEEEEecCcccchhcCcchHHHH
Confidence            44444 33468999999999999999 87753322   12211    1111111111 1111111   11111100  01


Q ss_pred             chhHHHhhchhhhccCcEEEEcCc---cC-hH--H-HHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           94 LTSFRQKLGDDAYAKLDVIGIDEA---QF-FE--D-LYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        94 ~~~~~~~~~~~l~~~p~lllLDEP---~~-~~--~-i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ..+....+  ..+.++.++|+||+   |+ .+  . ...++..+.+..+..++++||..+..
T Consensus       659 m~e~a~IL--~~at~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~  718 (840)
T TIGR01070       659 MTEAANIL--HNATENSLVLFDEIGRGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELT  718 (840)
T ss_pred             HHHHHHHH--hhCCCCEEEEEccCCCCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHH
Confidence            11111111  12568999999999   54 21  2 33344444443577899999998765

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.24  E-value=2.7e-05  Score=66.17  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=43.7

Q ss_pred             hccCcEEEEcCccC------------hHHHHHHHHHHHhcCCCEEEEEecChhhhh------cccchHHHHHhhccceee
Q 026304          106 YAKLDVIGIDEAQF------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLR------RSFGSVLDIIPLADTVTK  167 (240)
Q Consensus       106 ~~~p~lllLDEP~~------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~------~~f~~~~~L~~~ad~i~~  167 (240)
                      ..+|+++++| |..            ...+++.|.+++++.|.+|++++|......      +-.-++..|..-++.++.
T Consensus       109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~~~~~~~~~~~rGssal~~~~r~~~~  187 (239)
T cd01125         109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGSAKDGDTQEAARGASALVDGARWVRA  187 (239)
T ss_pred             hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCcccccCcccccccCcHHHHhcccceEEE
Confidence            4799999999 631            235778888888767999999999874321      223345555555666666


Q ss_pred             ecc
Q 026304          168 LTA  170 (240)
Q Consensus       168 l~~  170 (240)
                      +..
T Consensus       188 l~~  190 (239)
T cd01125         188 LTR  190 (239)
T ss_pred             Eee
Confidence            654

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.22  E-value=5.7e-07  Score=82.61  Aligned_cols=34  Identities=18%  Similarity=-0.015  Sum_probs=32.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++++ |++.+|++++|+|+||+|||||+ ++|+|+.
T Consensus       146 ID~l-l~I~~GQ~igI~G~sGaGKSTLl-~~I~g~~  179 (434)
T PRK07196        146 INGL-LTIGKGQRVGLMAGSGVGKSVLL-GMITRYT  179 (434)
T ss_pred             ccce-EeEecceEEEEECCCCCCccHHH-HHHhccc
Confidence            8899 99999999999999999999999 9999863

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=3.7e-06  Score=75.84  Aligned_cols=113  Identities=18%  Similarity=0.145  Sum_probs=70.4

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccCceecceecCcchhHHHhh
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDGAKLPCWALPELTSFRQKL  101 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~  101 (240)
                      -+-+|.++.|=|..|.||||||+++.+.+.-.+ ++.+....+     ..|....++-..+-.++....+.+......  
T Consensus        89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~--  165 (456)
T COG1066          89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE--  165 (456)
T ss_pred             CcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH--
Confidence            367899999999999999999988888765555 555543221     111111111112222333333332222221  


Q ss_pred             chhhhccCcEEEEcCccC---------------hHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304          102 GDDAYAKLDVIGIDEAQF---------------FEDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~---------------~~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                          -.+|+++++|=.+.               .++....|.+++++.+++++++.|---
T Consensus       166 ----~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTK  221 (456)
T COG1066         166 ----QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTK  221 (456)
T ss_pred             ----hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcc
Confidence                26999999997743               235666677888878999999999553

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.20  E-value=5.9e-06  Score=68.55  Aligned_cols=143  Identities=13%  Similarity=0.144  Sum_probs=70.9

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--hcccCCC--eEEEc---cC-ceecceecCcchhHH
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--DTRYAID--SVVTH---DG-AKLPCWALPELTSFR   98 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~~~~~~~--~~v~q---~~-~~~~~~~~~~~~~~~   98 (240)
                      -+++|.++.|.||+|||||||.+..+....-.|..+..+....  ..+....  .. ++   +. ..+...+..+.....
T Consensus         8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~   86 (209)
T TIGR02237         8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDR-PERALSNFIVFEVFDFDEQGVAI   86 (209)
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhC-hHHHhcCEEEEECCCHHHHHHHH
Confidence            4789999999999999999998555544333455554443221  0000000  00 00   00 011111111111112


Q ss_pred             Hhhchhh-hccCcEEEEcCccCh-------------HH---HHHHHHHHHhcCCCEEEEEecChhhhhc-ccchH--HHH
Q 026304           99 QKLGDDA-YAKLDVIGIDEAQFF-------------ED---LYEFCCNAADHDGKTVVVAGLDGDYLRR-SFGSV--LDI  158 (240)
Q Consensus        99 ~~~~~~l-~~~p~lllLDEP~~~-------------~~---i~~~l~~l~~~~g~tvi~vtHd~~~~~~-~f~~~--~~L  158 (240)
                      ..+...+ -.+|+++++|--++.             ..   ++..|.+++++.+.+++++.|-...... .+.+.  ..+
T Consensus        87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~~~~~~~~~~gg~~~  166 (209)
T TIGR02237        87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTDVNNGTLRPLGGHLL  166 (209)
T ss_pred             HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEecCCCCCcCCCcchh
Confidence            2211111 127999999987431             02   2334566666689999999885432211 00000  123


Q ss_pred             Hhhccceeeecc
Q 026304          159 IPLADTVTKLTA  170 (240)
Q Consensus       159 ~~~ad~i~~l~~  170 (240)
                      ..++|-++.|+.
T Consensus       167 ~~~~d~vi~l~~  178 (209)
T TIGR02237       167 EHWSKVILRLEK  178 (209)
T ss_pred             heeeeEEEEEEe
Confidence            566777776654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=98.20  E-value=2.3e-06  Score=72.46  Aligned_cols=144  Identities=15%  Similarity=0.092  Sum_probs=79.9

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----ccc--CCCeEEE---ccCceec--------
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----TRY--AIDSVVT---HDGAKLP--------   87 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~~~--~~~~~v~---q~~~~~~--------   87 (240)
                      -+++|+++.|.|+.|+|||||+++++...... |..+..++-...     .|.  ...++-.   +...+..        
T Consensus         9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (242)
T cd00984           9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLSDEDWERLAE   88 (242)
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHH
Confidence            57899999999999999999985666655444 666655542210     010  0000000   0000000        


Q ss_pred             --------ceec-----CcchhHHHhhchh-hhccCcEEEEcCccC-------------hHHHHHHHHHHHhcCCCEEEE
Q 026304           88 --------CWAL-----PELTSFRQKLGDD-AYAKLDVIGIDEAQF-------------FEDLYEFCCNAADHDGKTVVV  140 (240)
Q Consensus        88 --------~~~~-----~~~~~~~~~~~~~-l~~~p~lllLDEP~~-------------~~~i~~~l~~l~~~~g~tvi~  140 (240)
                              .+.+     .....+...+... ...+|+++++|=-+.             ...++..|++++++.+.++++
T Consensus        89 ~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~~~~ii~  168 (242)
T cd00984          89 AIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIA  168 (242)
T ss_pred             HHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence                    0000     0001111111110 123899999994321             125677778888778999999


Q ss_pred             EecChhhhh---------cccchHHHHHhhccceeeecc
Q 026304          141 AGLDGDYLR---------RSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       141 vtHd~~~~~---------~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++|-.....         ..+..+..+...||-++.|..
T Consensus       169 ~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~aD~vi~l~~  207 (242)
T cd00984         169 LSQLSRGVESRADKRPMLSDLRESGSIEQDADVVMFLYR  207 (242)
T ss_pred             ecccChhhhccCCCCCCHHHHhhhcccccCCCEEEEEec
Confidence            999543321         234444556778899988876

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.18  E-value=1.8e-06  Score=79.65  Aligned_cols=33  Identities=21%  Similarity=0.008  Sum_probs=31.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++ |.+.+|+.++|+|+||+|||||+ ++|++.
T Consensus       154 iD~l-~~i~~Gq~~~I~G~sG~GKStLl-~~I~~~  186 (440)
T TIGR01026       154 IDGL-LTVGKGQRIGIFAGSGVGKSTLL-GMIARN  186 (440)
T ss_pred             eeec-cccCCCcEEEEECCCCCCHHHHH-HHHhCC
Confidence            7788 99999999999999999999999 999986

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PLN03210 Resistant to P

Probab=98.17  E-value=5.3e-06  Score=85.26  Aligned_cols=30  Identities=27%  Similarity=0.094  Sum_probs=26.8

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++....+++++|+|++|+|||||+ +.+.+
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA-~~l~~  229 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIA-RALFS  229 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHH-HHHHH
Confidence            4677889999999999999999999 98855

syringae 6; Provisional

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=98.17  E-value=3.8e-06  Score=70.82  Aligned_cols=26  Identities=27%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      -+++|+++.|.||+|||||||+ ..++
T Consensus        15 Gi~~g~i~~i~G~~GsGKT~l~-~~l~   40 (235)
T cd01123          15 GIETGSITEIFGEFGSGKTQLC-HQLA   40 (235)
T ss_pred             CCCCCeEEEEECCCCCCHHHHH-HHHH
Confidence            4889999999999999999999 5443

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>TIGR00235 udk uridine kinase

Probab=98.16  E-value=1.2e-06  Score=72.89  Aligned_cols=26  Identities=38%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|++++|+||||||||||+ +.|.++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~-~~l~~~   29 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVA-RKIYEQ   29 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHH-HHHHHH
Confidence            68999999999999999999 999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.16  E-value=9e-06  Score=72.19  Aligned_cols=36  Identities=17%  Similarity=0.352  Sum_probs=28.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI   65 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~   65 (240)
                      .+|++++++|||||||||++ ..|++. ...|..+...
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~-~kLA~~l~~~g~~V~Li  148 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTI-GKLAHKYKAQGKKVLLA  148 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCeEEEE
Confidence            57999999999999999999 777775 3445555543

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.14  E-value=1.5e-06  Score=71.06  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .|++++|+||||||||||+ ++|++.
T Consensus         1 ~g~~i~l~G~sGsGKsTl~-~~l~~~   25 (186)
T PRK10078          1 MGKLIWLMGPSGSGKDSLL-AALRQR   25 (186)
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHhcc
Confidence            3789999999999999999 999875

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.14  E-value=5.7e-06  Score=76.61  Aligned_cols=99  Identities=27%  Similarity=0.325  Sum_probs=56.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL  109 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p  109 (240)
                      -+.|.||.|+|||+|+ +.+.....   .+..+..++......    .+       ...+.-.....+...    ...++
T Consensus       132 ~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~~~f~~----~~-------~~~~~~~~~~~f~~~----~~~~~  195 (440)
T PRK14088        132 PLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSEKFLN----DL-------VDSMKEGKLNEFREK----YRKKV  195 (440)
T ss_pred             eEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEHHHHHH----HH-------HHHHhcccHHHHHHH----HHhcC
Confidence            4899999999999999 88876322   123333322111000    00       000000001112111    12379


Q ss_pred             cEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEe-cChhhh
Q 026304          110 DVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAG-LDGDYL  148 (240)
Q Consensus       110 ~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vt-Hd~~~~  148 (240)
                      ++|++|||++       +.+++..+..+.+ .|+.+|++| |++..+
T Consensus       196 dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~l  241 (440)
T PRK14088        196 DVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKL  241 (440)
T ss_pred             CEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHHH
Confidence            9999999976       2467788888876 567777766 777766

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.14  E-value=3e-06  Score=78.10  Aligned_cols=46  Identities=24%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304            8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus         8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +..++.++++..|      ++.++ .+.+|+.++|+||||+|||||+ ++|+++
T Consensus       137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL-~~Ia~l  188 (450)
T PRK06002        137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLL-AMLARA  188 (450)
T ss_pred             CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHH-HHHhCC
Confidence            3468889999888      66675 8999999999999999999999 999987

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.14  E-value=1.4e-05  Score=67.16  Aligned_cols=145  Identities=17%  Similarity=0.163  Sum_probs=72.6

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--hcccC-CCeE----EEccCceecceecCcchhHH
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--DTRYA-IDSV----VTHDGAKLPCWALPELTSFR   98 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~~~~~-~~~~----v~q~~~~~~~~~~~~~~~~~   98 (240)
                      --+++|.++.|.||.|+|||||.+.++......|..+..+.-..  ..+.. ...-    +.+....+...+..+.....
T Consensus        18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   97 (225)
T PRK09361         18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAI   97 (225)
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence            35789999999999999999998555544434455555443220  00100 0000    00000011111111111111


Q ss_pred             HhhchhhhccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhhhc-ccch--HHH
Q 026304           99 QKLGDDAYAKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRR-SFGS--VLD  157 (240)
Q Consensus        99 ~~~~~~l~~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~-~f~~--~~~  157 (240)
                      ..+...+..+++++++|--++.                  .+++..|++++++.+.+|+++.|-...... ....  ...
T Consensus        98 ~~~~~~~~~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq~~~~~~~~~~~~~gg~~  177 (225)
T PRK09361         98 RKAEKLAKENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQVYSDIDSDGLRPLGGHT  177 (225)
T ss_pred             HHHHHHHHhcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccceecCCCCcccCCCcch
Confidence            1111111168999999987431                  112233556666689999999885432210 0000  112


Q ss_pred             HHhhccceeeecc
Q 026304          158 IIPLADTVTKLTA  170 (240)
Q Consensus       158 L~~~ad~i~~l~~  170 (240)
                      +..+||-++.|+.
T Consensus       178 ~~~~~d~ii~l~~  190 (225)
T PRK09361        178 LEHWSKTILRLEK  190 (225)
T ss_pred             hhhhccEEEEEEE
Confidence            4667777777753

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.12  E-value=8.5e-06  Score=75.91  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=33.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC-ceEEee
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG-RNIAMI   65 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g-~~i~~~   65 (240)
                      +++.++.+..|.+++++||||+||||++ ..|++..  ..| +.+..+
T Consensus       246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTi-aKLA~~~~~~~G~~kV~LI  292 (484)
T PRK06995        246 LDSEDALLDRGGVFALMGPTGVGKTTTT-AKLAARCVMRHGASKVALL  292 (484)
T ss_pred             ccCccccccCCcEEEEECCCCccHHHHH-HHHHHHHHHhcCCCeEEEE
Confidence            4567777889999999999999999999 7777753  233 355444

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.12  E-value=9.9e-07  Score=71.84  Aligned_cols=32  Identities=34%  Similarity=0.348  Sum_probs=25.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++++++.+| +++|+||||+||||++ .+|.-
T Consensus        10 ~~~~~i~f~~g-~~vi~G~Ng~GKStil-~ai~~   41 (202)
T PF13476_consen   10 FKDLEIDFSPG-LNVIYGPNGSGKSTIL-EAIRY   41 (202)
T ss_dssp             EEEEEEE--SE-EEEEEESTTSSHHHHH-HHHHH
T ss_pred             CcceEEEcCCC-cEEEECCCCCCHHHHH-HHHHH
Confidence            46777788776 9999999999999999 87754

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=98.11  E-value=3e-05  Score=67.07  Aligned_cols=107  Identities=21%  Similarity=0.174  Sum_probs=58.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      .++.++.|.||+||||||++ +.+..... .+..+..+........  .+. .|... .+    .....+...+...+-+
T Consensus        78 ~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E~~~--~~~-~q~~v-~~----~~~~~~~~~l~~~lR~  148 (264)
T cd01129          78 KPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVEYQI--PGI-NQVQV-NE----KAGLTFARGLRAILRQ  148 (264)
T ss_pred             cCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCceecC--CCc-eEEEe-CC----cCCcCHHHHHHHHhcc
Confidence            35669999999999999999 86654322 2333333321111111  111 11000 00    1112233333334457


Q ss_pred             cCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304          108 KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus       108 ~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                      +||+++++|....+.....+ +.+. .|..++.+.|-.+
T Consensus       149 ~PD~i~vgEiR~~e~a~~~~-~aa~-tGh~v~tTlHa~~  185 (264)
T cd01129         149 DPDIIMVGEIRDAETAEIAV-QAAL-TGHLVLSTLHTND  185 (264)
T ss_pred             CCCEEEeccCCCHHHHHHHH-HHHH-cCCcEEEEeccCC
Confidence            99999999996654444444 4444 5777777777544

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.11  E-value=3.9e-05  Score=76.57  Aligned_cols=62  Identities=21%  Similarity=0.073  Sum_probs=44.9

Q ss_pred             hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      ..+|.++++|||..       ...+.+.++.+++ .|.+++++||+++.+.+. +....+...|+..++|.
T Consensus       685 ~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d~~~s-~i~~~ilen~~t~I~Lp  753 (852)
T PRK13891        685 KGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSDAANS-GILDVIVESTATKIFLP  753 (852)
T ss_pred             cCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHhhC-chHHHHHHcCCcceecC
Confidence            57899999999955       3467788888876 688999999999988442 22344555566555554

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.11  E-value=1.5e-06  Score=66.33  Aligned_cols=113  Identities=22%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhC------CceEEeeccchhc-ccCCC-eEEEccCceecceecCcchhHHHh
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDN------GRNIAMIKSSKDT-RYAID-SVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~------g~~i~~~~~~~~~-~~~~~-~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      +.+.++.|.||.|+||||++ +.+......      ..++..+...... ..... .+..+-......  -.....+...
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~l~~~   78 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLI-KRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQTSDELRSL   78 (131)
T ss_dssp             -----EEEEE-TTSSHHHHH-HHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-HHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHH-HHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cCCHHHHHHH
Confidence            35678999999999999999 666543111      2222222111100 00000 000000000000  0011112222


Q ss_pred             hchhhhcc-CcEEEEcCccCh--HHHHHHHHHHHhcCCCEEEEEecC
Q 026304          101 LGDDAYAK-LDVIGIDEAQFF--EDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus       101 ~~~~l~~~-p~lllLDEP~~~--~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      +...+-.. ..+|++||.+..  ..+++.|+.+.++.+.++|+++++
T Consensus        79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence            22222223 359999999665  367888888877678899999987

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.10  E-value=4.2e-05  Score=75.96  Aligned_cols=63  Identities=14%  Similarity=0.023  Sum_probs=44.5

Q ss_pred             hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ..+|.++++|||..       .+.+.+.++.+++ .|..++++||+++.+... +....|.+-|...++|.+
T Consensus       640 ~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s-~~~~~i~~~~~t~I~lpn  709 (800)
T PRK13898        640 DGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSVEDASKS-AISDTLVQQTATQIFLPN  709 (800)
T ss_pred             cCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHhC-hhHHHHHHhCCeEEEcCC
Confidence            45899999999955       3367778888876 788999999999887443 334444555555444544

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.10  E-value=1.9e-06  Score=70.12  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=23.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +|++++|+|+|||||||++ ++++++
T Consensus         2 ~ge~i~l~G~sGsGKSTl~-~~la~~   26 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIG-SKIAAL   26 (176)
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHHh
Confidence            6999999999999999999 999985

>TIGR00767 rho transcription termination factor Rho

Probab=98.09  E-value=2.3e-06  Score=77.58  Aligned_cols=45  Identities=22%  Similarity=0.190  Sum_probs=41.1

Q ss_pred             eEEEcceeEee------ec-----------CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           10 AVTTNQVNSGR------DR-----------VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        10 ~l~~~~ls~~~------l~-----------~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++||++.|      |+           |+++.+.+|+.++|+||.|+|||||+ +.|...
T Consensus       130 ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~-~~i~~~  191 (415)
T TIGR00767       130 RVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLL-QKIAQA  191 (415)
T ss_pred             CeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHH-HHHHHh
Confidence            58999999999      75           89999999999999999999999999 888764

Members of this family differ in the specificity of RNA binding.

>PF13173 AAA_14: AAA domain

Probab=98.06  E-value=1.3e-05  Score=61.46  Aligned_cols=100  Identities=23%  Similarity=0.237  Sum_probs=57.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLD  110 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  110 (240)
                      +++++|.||-|+||||++ +.+..-.....++..++-             .+.. .......+   +...+......++.
T Consensus         2 ~~~~~l~G~R~vGKTtll-~~~~~~~~~~~~~~yi~~-------------~~~~-~~~~~~~~---~~~~~~~~~~~~~~   63 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLL-KQLAKDLLPPENILYINF-------------DDPR-DRRLADPD---LLEYFLELIKPGKK   63 (128)
T ss_pred             CCeEEEECCCCCCHHHHH-HHHHHHhcccccceeecc-------------CCHH-HHHHhhhh---hHHHHHHhhccCCc
Confidence            578999999999999999 655532222222222211             0000 00000000   11111111113678


Q ss_pred             EEEEcCccChHHHHHHHHHHHhcC-CCEEEEEecChhhh
Q 026304          111 VIGIDEAQFFEDLYEFCCNAADHD-GKTVVVAGLDGDYL  148 (240)
Q Consensus       111 lllLDEP~~~~~i~~~l~~l~~~~-g~tvi~vtHd~~~~  148 (240)
                      ++++||.+......+.++.+.+.. +..|++++......
T Consensus        64 ~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l  102 (128)
T PF13173_consen   64 YIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL  102 (128)
T ss_pred             EEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence            999999988777778888887743 47888888876544

>PRK08181 transposase; Validated

Probab=98.04  E-value=1.6e-05  Score=68.91  Aligned_cols=132  Identities=15%  Similarity=0.172  Sum_probs=71.2

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAY  106 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~  106 (240)
                      +.+++-+.|+||.|+|||.|+ ..|.... -.|..+...+.......    +       .....-........     .+
T Consensus       103 ~~~~~nlll~Gp~GtGKTHLa-~Aia~~a~~~g~~v~f~~~~~L~~~----l-------~~a~~~~~~~~~l~-----~l  165 (269)
T PRK08181        103 LAKGANLLLFGPPGGGKSHLA-AAIGLALIENGWRVLFTRTTDLVQK----L-------QVARRELQLESAIA-----KL  165 (269)
T ss_pred             HhcCceEEEEecCCCcHHHHH-HHHHHHHHHcCCceeeeeHHHHHHH----H-------HHHHhCCcHHHHHH-----HH
Confidence            457888999999999999999 8776532 23544433321110000    0       00000000001111     25


Q ss_pred             ccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCC
Q 026304          107 AKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGK  177 (240)
Q Consensus       107 ~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~  177 (240)
                      .++++|++||...       ...+.+++....+ .+.+||.+-..+....+.|+....-.++.||++.....+...|.
T Consensus       166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~  242 (269)
T PRK08181        166 DKFDLLILDDLAYVTKDQAETSVLFELISARYE-RRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE  242 (269)
T ss_pred             hcCCEEEEeccccccCCHHHHHHHHHHHHHHHh-CCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCc
Confidence            6899999999943       2357777766544 34444444445555655554443335566777653334444553

>PRK06893 DNA replication initiation factor; Validated

Probab=98.04  E-value=2.2e-05  Score=66.40  Aligned_cols=87  Identities=20%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLD  110 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  110 (240)
                      -.+.|.||.|+|||+|+ +.++.... .+..+..++...             ...+.       ..+..     .+.+++
T Consensus        40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~y~~~~~-------------~~~~~-------~~~~~-----~~~~~d   93 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLL-KAVSNHYLLNQRTAIYIPLSK-------------SQYFS-------PAVLE-----NLEQQD   93 (229)
T ss_pred             CeEEEECCCCCCHHHHH-HHHHHHHHHcCCCeEEeeHHH-------------hhhhh-------HHHHh-----hcccCC
Confidence            46789999999999999 98876422 232222221100             00000       01111     135789


Q ss_pred             EEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304          111 VIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus       111 lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                      +|++||+..       ...+.+++.+..+ .|.+++++|++.
T Consensus        94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~-~~~~illits~~  134 (229)
T PRK06893         94 LVCLDDLQAVIGNEEWELAIFDLFNRIKE-QGKTLLLISADC  134 (229)
T ss_pred             EEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCcEEEEeCCC
Confidence            999999966       2357777777765 577777666654

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.04  E-value=1.3e-05  Score=67.15  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHH
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      --+++|+++.|.||+|+|||||++.++
T Consensus        14 GG~~~g~v~~I~G~~GsGKT~l~~~ia   40 (226)
T cd01393          14 GGIPTGRITEIFGEFGSGKTQLCLQLA   40 (226)
T ss_pred             CCCcCCcEEEEeCCCCCChhHHHHHHH
Confidence            358899999999999999999993433

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=98.03  E-value=3.5e-05  Score=66.57  Aligned_cols=107  Identities=21%  Similarity=0.174  Sum_probs=58.0

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeeccchhcccCC-CeEEEccCceecceecCcchhHHHhhchhh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDTRYAI-DSVVTHDGAKLPCWALPELTSFRQKLGDDA  105 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~~~~~~~~~-~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l  105 (240)
                      +..+..+.|.||.||||||++ +.+....... ..+..+.......... .....+        ...+...+...+...+
T Consensus       124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~--------~~~~~~~~~~~l~~~L  194 (270)
T PF00437_consen  124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQ--------TRRDEISYEDLLKSAL  194 (270)
T ss_dssp             HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEE--------EETTTBSHHHHHHHHT
T ss_pred             cccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccceeecccceEEEE--------eecCcccHHHHHHHHh
Confidence            556899999999999999999 8887653333 4444332211111110 011110        0023333333344445


Q ss_pred             hccCcEEEEcCccChHHHHHHHHHHHhcCCCEE-EEEecChh
Q 026304          106 YAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTV-VVAGLDGD  146 (240)
Q Consensus       106 ~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tv-i~vtHd~~  146 (240)
                      =++|++++++|-... +..+.+ +.+. .|..+ +.+.|-.+
T Consensus       195 R~~pD~iiigEiR~~-e~~~~~-~a~~-tGh~~~~tT~Ha~s  233 (270)
T PF00437_consen  195 RQDPDVIIIGEIRDP-EAAEAI-QAAN-TGHLGSLTTLHANS  233 (270)
T ss_dssp             TS--SEEEESCE-SC-HHHHHH-HHHH-TT-EEEEEEEE-SS
T ss_pred             cCCCCcccccccCCH-hHHHHH-Hhhc-cCCceeeeeeecCC
Confidence            579999999999664 444553 4444 68888 77777543

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.02  E-value=6.1e-05  Score=57.05  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.|.||.|+||||++ +.++..
T Consensus         1 ill~G~~G~GKT~l~-~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLA-RALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHH-HHHHHH
T ss_pred             CEEECcCCCCeeHHH-HHHHhh
Confidence            478999999999999 988753

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=98.02  E-value=2e-05  Score=74.23  Aligned_cols=155  Identities=14%  Similarity=0.084  Sum_probs=79.4

Q ss_pred             cceeEee--ecCCC-CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----c---ccCCC-----
Q 026304           14 NQVNSGR--DRVGL-PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----T---RYAID-----   76 (240)
Q Consensus        14 ~~ls~~~--l~~vs-l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~---~~~~~-----   76 (240)
                      +.++.+.  |+.+- --+++|.++.|.|++|+|||||.++.+...... |..+..+.-...     .   ..+..     
T Consensus        11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~   90 (509)
T PRK09302         11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLI   90 (509)
T ss_pred             ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence            3444444  55553 369999999999999999999995555432223 655544432110     0   01100     


Q ss_pred             ---eEEEccCceec-ce---ecCcchhHHHhhchh-hhccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCE
Q 026304           77 ---SVVTHDGAKLP-CW---ALPELTSFRQKLGDD-AYAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKT  137 (240)
Q Consensus        77 ---~~v~q~~~~~~-~~---~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~t  137 (240)
                         .+...+....+ ..   .-.+...+...+... .-.+|+.+++|=-+.           +..+.++++.+.+ .|.|
T Consensus        91 ~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~-~g~T  169 (509)
T PRK09302         91 DEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQ-KGVT  169 (509)
T ss_pred             hCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHh-CCCE
Confidence               01110000000 00   000111122222111 135789999995532           2345666666665 7999


Q ss_pred             EEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          138 VVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       138 vi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +++++|+...... .........+||.|+.|+.
T Consensus       170 vLlt~~~~~~~~~-~~~~~~~~~laDgVI~L~~  201 (509)
T PRK09302        170 AVITGERGDEYGP-LTRYGVEEFVSDCVIILRN  201 (509)
T ss_pred             EEEEECCccCcCC-ccccCceEEEeeEEEEEeE
Confidence            9999998652100 0000011458999999875

>TIGR00618 sbcc exonuclease SbcC

Probab=97.98  E-value=1.5e-05  Score=81.10  Aligned_cols=52  Identities=12%  Similarity=0.072  Sum_probs=46.7

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +|++||+|||+.      ...+++.|.++.. .|.+|+++||++++.          ..+||+|.+++.
T Consensus       978 ~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~~----------~~~~~~i~v~~~ 1035 (1042)
T TIGR00618       978 VLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEFR----------ERIPHRILVKKT 1035 (1042)
T ss_pred             CCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHH----------HhhCCEEEEEEC
Confidence            799999999977      4578899999986 799999999999999          999999999864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK06526 transposase; Provisional

Probab=97.98  E-value=2.1e-05  Score=67.73  Aligned_cols=129  Identities=14%  Similarity=0.199  Sum_probs=66.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      ..++-+.|+||.|+|||+|+ ..|... .-.|..+........        +.+.   ..... .+  .+...+  ..+.
T Consensus        96 ~~~~nlll~Gp~GtGKThLa-~al~~~a~~~g~~v~f~t~~~l--------~~~l---~~~~~-~~--~~~~~l--~~l~  158 (254)
T PRK06526         96 TGKENVVFLGPPGTGKTHLA-IGLGIRACQAGHRVLFATAAQW--------VARL---AAAHH-AG--RLQAEL--VKLG  158 (254)
T ss_pred             hcCceEEEEeCCCCchHHHH-HHHHHHHHHCCCchhhhhHHHH--------HHHH---HHHHh-cC--cHHHHH--HHhc
Confidence            56788999999999999999 777542 223443322211100        0000   00000 00  000111  1246


Q ss_pred             cCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEec-ChhhhhcccchHHHHHhhccceeeecceeeccC
Q 026304          108 KLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGL-DGDYLRRSFGSVLDIIPLADTVTKLTARCELCG  176 (240)
Q Consensus       108 ~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtH-d~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g  176 (240)
                      ++++|++||...       ...+.+++....+ .+ .+|++|+ ..+...+.|+.-..-.++.||++.....+...|
T Consensus       159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-~~-s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g  233 (254)
T PRK06526        159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-RA-SLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKG  233 (254)
T ss_pred             cCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-cC-CEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecC
Confidence            799999999843       2235566654443 34 4555555 445555666654444566677765433444444

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.97  E-value=7e-05  Score=62.91  Aligned_cols=141  Identities=21%  Similarity=0.190  Sum_probs=72.2

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccchh-----c---ccCCC--------eEEEccCcee-cc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSKD-----T---RYAID--------SVVTHDGAKL-PC   88 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~~-----~---~~~~~--------~~v~q~~~~~-~~   88 (240)
                      -+++|.++.|.||+|+|||+|.++.+.....+ |..+..+.-...     .   .++..        .+.+.+.... ..
T Consensus        15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~   94 (226)
T PF06745_consen   15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG   94 (226)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred             CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence            47899999999999999999986666544444 666655532211     0   01100        0111110000 00


Q ss_pred             eecCcchhHHHhhchh-hhccCcEEEEcCccC----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHH
Q 026304           89 WALPELTSFRQKLGDD-AYAKLDVIGIDEAQF----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLD  157 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~  157 (240)
                      ....+...+...+... --.+|+.+++|--+.          +..+..+...+++ .|.|+++++|-...  ..-.....
T Consensus        95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~-~~~t~llt~~~~~~--~~~~~~~~  171 (226)
T PF06745_consen   95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS-RGVTTLLTSEMPSG--SEDDGTFG  171 (226)
T ss_dssp             -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH-TTEEEEEEEEESSS--SSSSSSTS
T ss_pred             ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEEccccC--cccccccc
Confidence            0011112222222221 124779999996533          2234445555554 78998988882110  00111222


Q ss_pred             HHh-hccceeeecc
Q 026304          158 IIP-LADTVTKLTA  170 (240)
Q Consensus       158 L~~-~ad~i~~l~~  170 (240)
                      +.. +||-|+.|+.
T Consensus       172 i~~~l~D~vI~L~~  185 (226)
T PF06745_consen  172 IEHYLADGVIELRY  185 (226)
T ss_dssp             HHHHHSSEEEEEEE
T ss_pred             hhhhcccEEEEEEE
Confidence            355 8999999985

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=97.97  E-value=0.00011  Score=73.15  Aligned_cols=63  Identities=19%  Similarity=0.105  Sum_probs=46.8

Q ss_pred             hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      -.+|.++++|||..       ...+.+.++.+++ .|.+++++||+++.+.+. +....+...|+..++|.+
T Consensus       633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~d~~~s-~~~~~il~n~~t~i~L~~  702 (811)
T PRK13873        633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLADIDGS-AIAPAIIESCPTRIFLPN  702 (811)
T ss_pred             cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHhcC-chHHHHHHhCCeeEEcCC
Confidence            34899999999955       2357778888876 689999999999877443 334556667776666665

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.95  E-value=9.5e-05  Score=58.92  Aligned_cols=39  Identities=23%  Similarity=0.176  Sum_probs=29.9

Q ss_pred             hccCcEEEEcCccC----hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304          106 YAKLDVIGIDEAQF----FEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus       106 ~~~p~lllLDEP~~----~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                      ...+|++++||.--    ...+.+.+.+..+ .++.+|.+-|.-
T Consensus        98 ~~~aDvIIIDEIGpMElks~~f~~~ve~vl~-~~kpliatlHrr  140 (179)
T COG1618          98 LEEADVIIIDEIGPMELKSKKFREAVEEVLK-SGKPLIATLHRR  140 (179)
T ss_pred             hhcCCEEEEecccchhhccHHHHHHHHHHhc-CCCcEEEEEecc
Confidence            45689999999833    3468888888886 678888888854

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
2orv_A	234	Human Thymidine Kinase 1 In Complex With Tp4a Lengt		6e-36
1xbt_A	193	Crystal Structure Of Human Thymidine Kinase 1 Lengt		8e-36
2wvj_A	193	Mutation Of Thr163 To Ser In Human Thymidine Kinase		2e-35
1w4r_A	195	Structure Of A Type Ii Thymidine Kinase With Bound		2e-34
2j87_A	177	Structure Of Vaccinia Virus Thymidine Kinase In Com		5e-32
2ja1_A	197	Thymidine Kinase From B. Cereus With Ttp Bound As P		2e-21
1xx6_A	191	X-Ray Structure Of Clostridium Acetobutylicum Thymi		9e-21
2uz3_A	243	Crystal Structure Of Thymidine Kinase With Dttp Fro		1e-20
2b8t_A	223	Crystal Structure Of Thymidine Kinase From U.Urealy		1e-20
2j9r_A	214	Thymidine Kinase From B. Anthracis In Complex With		1e-20
3e2i_A	219	Crystal Structure Of Thymidine Kinase From S. Aureu		5e-20
2orw_A	184	Thermotoga Maritima Thymidine Kinase 1 Like Enzyme		8e-18

>pdb|2ORV|A Chain A, Human Thymidine Kinase 1 In Complex With Tp4a Length = 234

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70
Query: 84  AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
             +   ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA L
Sbjct: 71  NTM--EALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 124
Query: 144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPV 203
           DG + R+ FG++L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  V
Sbjct: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSV 184
Query: 204 CRQHY 208
           CR  Y
Sbjct: 185 CRLCY 189

>pdb|1XBT|A Chain A, Crystal Structure Of Human Thymidine Kinase 1 Length = 193

Iteration: 1
 Score =  146 bits (369), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70
Query: 84  AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
             +   ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA L
Sbjct: 71  NTM--EALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 124
Query: 144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPV 203
           DG + R+ FG++L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  V
Sbjct: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSV 184
Query: 204 CRQHY 208
           CR  Y
Sbjct: 185 CRLCY 189

>pdb|2WVJ|A Chain A, Mutation Of Thr163 To Ser In Human Thymidine Kinase Shifts The Specificity From Thymidine Towards The Nucleoside Analogue Azidothymidine Length = 193

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/185 (43%), Positives = 112/185 (60%), Gaps = 7/185 (3%)
Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70
Query: 84  AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
             +   ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA L
Sbjct: 71  NTM--EALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAAL 124
Query: 144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPV 203
           DG + R+ FG++L+++PLA++V KLTA C  C + A ++ R        +IGGAD Y  V
Sbjct: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYSKRLGTEKEVEVIGGADKYHSV 184
Query: 204 CRQHY 208
           CR  Y
Sbjct: 185 CRLCY 189

>pdb|1W4R|A Chain A, Structure Of A Type Ii Thymidine Kinase With Bound Dttp Length = 195

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/181 (44%), Positives = 110/181 (60%), Gaps = 7/181 (3%)
Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
           +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD   + 
Sbjct: 17  KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTME 75
Query: 88  CWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
             ALP      + +  +A   + VIGIDE QFF D+ EFC  A  + GKTV+VA LDG +
Sbjct: 76  --ALP--ACLLRDVAQEALG-VAVIGIDEGQFFPDIVEFC-EAMANAGKTVIVAALDGTF 129
Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPVCRQH 207
            R+ FG++L+++PLA++V KLTA C  C + A +T R        +IGGAD Y  VCR  
Sbjct: 130 QRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLC 189
Query: 208 Y 208
           Y
Sbjct: 190 Y 190

>pdb|2J87|A Chain A, Structure Of Vaccinia Virus Thymidine Kinase In Complex With Dttp: Insights For Drug Design Length = 177

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 100/181 (55%), Gaps = 7/181 (3%)
Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
           N G I +I+GPMF+GK+T L+RR+R           IK S D RY    + THD      
Sbjct: 2   NGGHIQLIIGPMFSGKSTELIRRVRRYQIAQYKCVTIKYSNDNRYG-TGLWTHDKNNFEA 60
Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148
               +L    Q + D       VIGIDE QFF D+ EFC   A+ +GK V+VA LDG + 
Sbjct: 61  LEATKLCDVLQSITD-----FSVIGIDEGQFFPDIVEFCERMAN-EGKIVIVAALDGTFQ 114
Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXIIGGADVYMPVCRQHY 208
           R+ F ++L+++ L++ V KLTA C  C K A F+ R        IIGG D+Y  VCR+ Y
Sbjct: 115 RKPFNNILNLLILSEMVVKLTAVCMKCFKEASFSKRLGEETEIEIIGGNDMYQSVCRKCY 174
Query: 209 V 209
           V
Sbjct: 175 V 175

>pdb|2JA1|A Chain A, Thymidine Kinase From B. Cereus With Ttp Bound As Phosphate Donor Length = 197

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 66/185 (35%), Positives = 98/185 (52%), Gaps = 12/185 (6%)
Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
            +G I VI G MF+GK+  L+RR+R      ++  + K   D RY+ + VV+H+G K+  
Sbjct: 8   QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVK- 66
Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDY 147
            A+P   S  + + +    +LDVI IDE QFF+ D+ E     A+  G  V+VAGLD D+
Sbjct: 67  -AVP--VSASKDIFEHITEELDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDF 122
Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLR------KXXXXXXXIIGGADVYM 201
               FG V  ++ +A+ VTKL A C +CG  A  T R              ++G ++ Y 
Sbjct: 123 RGLPFGQVPQLMAIAEHVTKLQAVCSVCGSPASRTQRLIDGEPAAFDDPIILVGASESYE 182
Query: 202 PVCRQ 206
           P CR 
Sbjct: 183 PRCRH 187

>pdb|1XX6|A Chain A, X-Ray Structure Of Clostridium Acetobutylicum Thymidine Kinase With Adp. Northeast Structural Genomics Target Car26. Length = 191

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
           ++ G + VI+GP ++GK+  L+RRIR      + I + K   D RY+ + VV+H G K  
Sbjct: 5   KDHGWVEVIVGPXYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHXGEKEQ 64
Query: 88  CWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
             A+       +   +D     +VI IDE QFF+D      N     G+ V+ AGLD D+
Sbjct: 65  AVAIKNSREILKYFEEDT----EVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDXDF 120
Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLR------KXXXXXXXIIGGADVYM 201
             + FG + ++  +A+ V K+ A C +CG  A  T R              +IG  + Y 
Sbjct: 121 RGKPFGPIPELXAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAXESYE 180
Query: 202 PVCRQHYVNGQ 212
             CR+ +V  Q
Sbjct: 181 ARCRKCHVVPQ 191

>pdb|2UZ3|A Chain A, Crystal Structure Of Thymidine Kinase With Dttp From U. Urealyticum Length = 243

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           G I  I GPMFAGKT  L+RR+           + K   DTR +I ++ +  G  LP   
Sbjct: 32  GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVE 90
Query: 91  L---PELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
           +   PE+ ++   + +    +  VIGIDE QFF+D      N    +G  V+++GLD ++
Sbjct: 91  VESAPEILNY--IMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 148
Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXI------IGGADVYM 201
               FG +  +   AD +TKLTA C  CG  A  +LRK              IG  + Y 
Sbjct: 149 KGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYS 208
Query: 202 PVCRQHY 208
            VCR H+
Sbjct: 209 AVCRHHH 215

>pdb|2B8T|A Chain A, Crystal Structure Of Thymidine Kinase From U.Urealyticum In Complex With Thymidine Length = 223

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 90/187 (48%), Gaps = 12/187 (6%)
Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           G I  I GPMFAGKT  L+RR+           + K   DTR +I ++ +  G  LP   
Sbjct: 12  GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVE 70
Query: 91  L---PELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
           +   PE+ ++   + +    +  VIGIDE QFF+D      N    +G  V+++GLD ++
Sbjct: 71  VESAPEILNY--IMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNF 128
Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXI------IGGADVYM 201
               FG +  +   AD +TKLTA C  CG  A  +LRK              IG  + Y 
Sbjct: 129 KGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYS 188
Query: 202 PVCRQHY 208
            VCR H+
Sbjct: 189 AVCRHHH 195

>pdb|2J9R|A Chain A, Thymidine Kinase From B. Anthracis In Complex With Dt Length = 214

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/185 (35%), Positives = 96/185 (51%), Gaps = 12/185 (6%)
Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
            +G I VI G MF+GK+  L+RR+R      ++  + K   D RY+ + VV+H+G K+  
Sbjct: 26  QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVK- 84
Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDY 147
            A+P   S  + +      ++DVI IDE QFF+ D+ E     A+  G  V+VAGLD D+
Sbjct: 85  -AVP--VSASKDIFKHITEEMDVIAIDEVQFFDGDIVEVVQVLANR-GYRVIVAGLDQDF 140
Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLR------KXXXXXXXIIGGADVYM 201
               FG V  ++ +A+ VTKL A C  CG  A  T R              ++G ++ Y 
Sbjct: 141 RGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEPAAFDDPIILVGASESYE 200
Query: 202 PVCRQ 206
           P CR 
Sbjct: 201 PRCRH 205

>pdb|3E2I|A Chain A, Crystal Structure Of Thymidine Kinase From S. Aureus Length = 219

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 10/187 (5%)
Query: 29  NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPC 88
           +SG I  I G  F+GK+  L+RR+R      + + + K + D RY  + VV+H+G  +  
Sbjct: 26  HSGWIECITGSXFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA 85
Query: 89  WALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL 148
             + + +    ++       +DVIGIDE QFF+D           DG  V+VAGLD D+ 
Sbjct: 86  INISKAS----EIXTHDLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDXDFR 141
Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKXXXXXXXI------IGGADVYMP 202
              F     +  +++ VTKL A C +CG  +  T R        I      +G  + Y P
Sbjct: 142 GEPFEPXPKLXAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEP 201
Query: 203 VCRQHYV 209
            CR H++
Sbjct: 202 RCRAHHI 208

>pdb|2ORW|A Chain A, Thermotoga Maritima Thymidine Kinase 1 Like Enzyme In Complex With Tp4a Length = 184

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 7/181 (3%)
Query: 30  SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89
           SG++ VI GPM++GKTT LL  +       + +A+ K   D+RY    +V+H G  +   
Sbjct: 2   SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAH 61
Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYL 148
            +      R+ + +D       + IDE QFF   L+E   +  D  G  V  AGLD  + 
Sbjct: 62  VIERPEEMRKYIEEDTRG----VFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHK 116
Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGK-RAFFTLRKXXXXXXXIIGGADVYMPVCRQH 207
           +  F +   ++ LADTV K  A C  CG+  A  TL+         +GG + Y+ VCR  
Sbjct: 117 QNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDC 176
Query: 208 Y 208
           Y
Sbjct: 177 Y 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	3e-82
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	3e-80
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	6e-80
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	3e-79
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	2e-77
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	7e-76
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	1e-75

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 Length = 191

 Score =  243 bits (622), Expect = 3e-82
 Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 10/191 (5%)

Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
           ++ G + VI+GPM++GK+  L+RRIR      + I + K   D RY+ + VV+H G K  
Sbjct: 5   KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQ 64

Query: 88  CWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
             A+       +   +D     +VI IDE QFF+D      N     G+ V+ AGLD D+
Sbjct: 65  AVAIKNSREILKYFEEDT----EVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120

Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE------ETETEIIGGADVYM 201
             + FG + +++ +A+ V K+ A C +CG  A  T R         +    +IG  + Y 
Sbjct: 121 RGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYE 180

Query: 202 PVCRQHYVNGQ 212
             CR+ +V  Q
Sbjct: 181 ARCRKCHVVPQ 191

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* Length = 214

 Score =  239 bits (611), Expect = 3e-80
 Identities = 59/189 (31%), Positives = 92/189 (48%), Gaps = 10/189 (5%)

Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
             +G I VI G MF+GK+  L+RR+R      ++  + K   D RY+ + VV+H+G K+ 
Sbjct: 25  NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVK 84

Query: 88  CWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
              +       + + ++     DVI IDE QFF+           + G  V+VAGLD D+
Sbjct: 85  AVPVSASKDIFKHITEEM----DVIAIDEVQFFDGDIVEVVQVLANRGYRVIVAGLDQDF 140

Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE------ETETEIIGGADVYM 201
               FG V  ++ +A+ VTKL A C  CG  A  T R  +      +    ++G ++ Y 
Sbjct: 141 RGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLIDGEPAAFDDPIILVGASESYE 200

Query: 202 PVCRQHYVN 210
           P CR  +  
Sbjct: 201 PRCRHCHAV 209

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* Length = 223

 Score =  238 bits (609), Expect = 6e-80
 Identities = 60/192 (31%), Positives = 88/192 (45%), Gaps = 8/192 (4%)

Query: 26  PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAK 85
             +  G I  I GPMFAGKT  L+RR+           + K   DTR    ++ +  G  
Sbjct: 7   FSKKIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGTS 65

Query: 86  LPCWALPELTSFRQKLGDDAYA-KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLD 144
           LP   +         +  +++  +  VIGIDE QFF+D      N    +G  V+++GLD
Sbjct: 66  LPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLD 125

Query: 145 GDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE------ETETEIIGGAD 198
            ++    FG +  +   AD +TKLTA C  CG  A  +LRK +        +   IG  +
Sbjct: 126 KNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQE 185

Query: 199 VYMPVCRQHYVN 210
            Y  VCR H+  
Sbjct: 186 FYSAVCRHHHKV 197

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} Length = 219

 Score =  236 bits (604), Expect = 3e-79
 Identities = 58/191 (30%), Positives = 92/191 (48%), Gaps = 10/191 (5%)

Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
            +SG I  I G MF+GK+  L+RR+R      + + + K + D RY  + VV+H+G  + 
Sbjct: 25  YHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIE 84

Query: 88  CWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
              + + +             +DVIGIDE QFF+D           DG  V+VAGLD D+
Sbjct: 85  AINISKASEIMTH----DLTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDF 140

Query: 148 LRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE------ETETEIIGGADVYM 201
               F  +  ++ +++ VTKL A C +CG  +  T R         +    ++G  + Y 
Sbjct: 141 RGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYE 200

Query: 202 PVCRQHYVNGQ 212
           P CR H++   
Sbjct: 201 PRCRAHHIVAP 211

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* Length = 195

 Score =  231 bits (590), Expect = 2e-77
 Identities = 81/182 (44%), Positives = 109/182 (59%), Gaps = 7/182 (3%)

Query: 27  HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKL 86
            +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD   +
Sbjct: 16  SKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTM 74

Query: 87  PCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD 146
                  L    Q+        + VIGIDE QFF D+ EFC   A+  GKTV+VA LDG 
Sbjct: 75  EALPACLLRDVAQE-----ALGVAVIGIDEGQFFPDIVEFCEAMANA-GKTVIVAALDGT 128

Query: 147 YLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQ 206
           + R+ FG++L+++PLA++V KLTA C  C + A +T R   E E E+IGGAD Y  VCR 
Sbjct: 129 FQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRL 188

Query: 207 HY 208
            Y
Sbjct: 189 CY 190

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 Length = 234

 Score =  228 bits (583), Expect = 7e-76
 Identities = 83/186 (44%), Positives = 111/186 (59%), Gaps = 7/186 (3%)

Query: 24  GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG 83
           G P +  G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY+  S  THD 
Sbjct: 12  GSPSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDR 70

Query: 84  AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGL 143
             +       L    Q+        + VIGIDE QFF D+ EFC   A+  GKTV+VA L
Sbjct: 71  NTMEALPACLLRDVAQE-----ALGVAVIGIDEGQFFPDIVEFCEAMANA-GKTVIVAAL 124

Query: 144 DGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEETETEIIGGADVYMPV 203
           DG + R+ FG++L+++PLA++V KLTA C  C + A +T R   E E E+IGGAD Y  V
Sbjct: 125 DGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTEKEVEVIGGADKYHSV 184

Query: 204 CRQHYV 209
           CR  Y 
Sbjct: 185 CRLCYF 190

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* Length = 184

 Score =  226 bits (578), Expect = 1e-75
 Identities = 60/181 (33%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 30  SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW 89
           SG++ VI GPM++GKTT LL  +       + +A+ K   D+RY    +V+H G  +   
Sbjct: 2   SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAH 61

Query: 90  ALPELTSFRQKLGDDAYAKLDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYL 148
            +      R+ + +D       + IDE QFF   L+E   +  D  G  V  AGLD  + 
Sbjct: 62  VIERPEEMRKYIEEDT----RGVFIDEVQFFNPSLFEVVKDLLDR-GIDVFCAGLDLTHK 116

Query: 149 RRSFGSVLDIIPLADTVTKLTARCELCGKR-AFFTLRKTEETETEIIGGADVYMPVCRQH 207
           +  F +   ++ LADTV K  A C  CG+  A  TL+     E   +GG + Y+ VCR  
Sbjct: 117 QNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDC 176

Query: 208 Y 208
           Y
Sbjct: 177 Y 177

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	99.98
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.98
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.98
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.97
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.97
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.97
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.97
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.97
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.97
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.97
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.97
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.97
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.97
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.96
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.96
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.96
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.96
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	99.96
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.96
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.96
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.95
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	99.95
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.95
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.95
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	99.95
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	99.94
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.94
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	99.94
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.94
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.94
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.94
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.94
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.93
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.93
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.93
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	99.93
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.92
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.92
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	99.92
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.91
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.91
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.9
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.9
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.9
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.89
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.89
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.87
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.85
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.84
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.84
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.83
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.81
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.79
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.79
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.78
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.78
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.77
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.77
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.77
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.75
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.75
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.73
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.72
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.72
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.72
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.71
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.69
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.67
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.66
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.65
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.65
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.64
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.64
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.63
2og2_A	359	Putative signal recognition particle receptor; nuc	99.6
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.6
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.57
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.56
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.55
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.54
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.53
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.53
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.51
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.5
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.46
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.43
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.43
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.43
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.42
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.42
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.41
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.4
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.4
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.38
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.38
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.37
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.36
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.36
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.36
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.36
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.34
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.3
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.27
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.24
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.24
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.24
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.2
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.18
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.18
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.16
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.11
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.1
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.89
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.89
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	98.87
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.84
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.83
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.82
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.81
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.8
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.79
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.78
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.76
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.74
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.73
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.7
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.67
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.65
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.64
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.64
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.61
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.58
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.58
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.57
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.56
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.53
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.5
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.49
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.47
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.44
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.44
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.44
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.4
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.38
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.38
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.38
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.36
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.35
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.35
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.35
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.32
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.32
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.31
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.29
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.24
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.21
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.2
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.19
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.17
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.16
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.14
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.14
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.12
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.11
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.1
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.1
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.1
3bos_A	242	Putative DNA replication factor; P-loop containing	98.08
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.07
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.07
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.06
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.06
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.05
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.04
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.04
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.02
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.01
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	98.01
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	98.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.01
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.01
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.01
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.0
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.0
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.0
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.0
3io5_A	333	Recombination and repair protein; storage dimer, i	97.99
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.99
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.99
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.99
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.95
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.93
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.93
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.89
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.86
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.86
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.84
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.83
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.82
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.82
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.81
3ice_A	422	Transcription termination factor RHO; transcriptio	97.78
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.78
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.75
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.74
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.72
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.7
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.7
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.68
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.67
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	97.66
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.65
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.65
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.64
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.62
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.59
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.56
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.54
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.52
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.52
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.5
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.5
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.5
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.48
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.47
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.46
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.45
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.41
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.4
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.38
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.38
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.37
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.36
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.36
2qgz_A	308	Helicase loader, putative primosome component; str	97.34
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.34
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.33
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.32
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.32
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.32
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.3
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.3
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.3
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.29
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.29
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.27
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.27
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.26
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.24
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.23
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.23
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.22
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.2
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.19
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.19
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.18
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.18
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.17
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.17
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.16
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.15
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.15
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.15
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.14
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.13
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.12
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.11
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.11
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.1
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.1
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.09
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.09
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.08
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.05
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.04
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	97.04
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.04
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.01
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.01
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.01
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.0
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.0
1via_A	175	Shikimate kinase; structural genomics, transferase	96.99
3co5_A	143	Putative two-component system transcriptional RES	96.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.98
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.97
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.96
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.96
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.96
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	96.96
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	96.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.92
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.92
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.91
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.88
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.86
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.86
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.85
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.85
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.8
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.79
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.79
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.78
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.75
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.75
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.74
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.71
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.71
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.7
3pvs_A	447	Replication-associated recombination protein A; ma	96.69
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.68
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.66
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.66
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.66
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.66
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.65
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.64
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.63
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.61
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.59
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.59
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.58
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.56
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.56
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.55
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.5
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.49
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.48
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.46
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.44
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.44
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.42
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.38
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.37
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.36
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.35
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.35
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.33
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.33
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.32
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.31
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.31
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.3
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.29
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.29
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.29
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.27
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.27
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.26
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.26
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.25
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.25
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.25
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.25
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.25
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.25
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.23
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.23
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.23
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.22
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.2
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.2
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.2
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.17
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.17
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.16
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.13
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.12
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	96.12
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.12
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.12
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.1
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.1
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.09
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.09
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.09
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.07
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.07
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.06
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.06
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.06
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.04
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.01
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.01
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.0
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.99
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.99
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.99
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.94
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.94
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.94
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.94
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.93
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.93
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.92
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.91
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.91
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.91
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.9
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.89
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	95.89
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.88
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.87
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.87
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.85
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.85
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.83
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.82
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.82
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.82
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.81
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.81
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.81
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.81
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.81
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.8
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.79
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.79
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	95.77
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.77
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.73
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.73
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.72
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.7
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.7
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.7
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.69
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.69
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.68
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.67
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.64
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.64
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.62
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.62
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.62
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.62
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.62
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.62
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.62
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.62
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.61
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.61
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.61
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	95.6
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	95.59
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.59
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.59
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.57
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.57
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.54
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.54
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.53
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.5
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.5
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.5
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.46
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.39
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.35
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.35
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.34
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.28
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.27

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1.4e-34  Score=258.17  Aligned_cols=164  Identities=14%  Similarity=0.088  Sum_probs=134.5

Q ss_pred             CCceEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccch
Q 026304            7 KPAAVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSK   69 (240)
Q Consensus         7 ~~~~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~   69 (240)
                      ..+||+++||+++|         |+||||+|++||+++|+||||||||||+ |+|+|+        .++|+++...+...
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLl-r~i~GL~~p~~G~I~i~G~~i~~~~~~~   99 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTEGSVLVDGQELTTLSESE   99 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHHH
Confidence            34589999999998         7899999999999999999999999999 999997        35677665544332


Q ss_pred             hc-ccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhh
Q 026304           70 DT-RYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAY  106 (240)
Q Consensus        70 ~~-~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~  106 (240)
                      .. ..+..+|+||+..+++.+|+.+++.+....                                          +..++
T Consensus       100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~  179 (366)
T 3tui_C          100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALA  179 (366)
T ss_dssp             HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTT
T ss_pred             HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHh
Confidence            11 123469999999999999998887654221                                          11258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|||||||+      +..++++|++++++.|+|||++|||++.+          ..+||||++|++ +++..|+++
T Consensus       180 ~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~----------~~~aDrv~vl~~G~iv~~g~~~  249 (366)
T 3tui_C          180 SNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV----------KRICDCVAVISNGELIEQDTVS  249 (366)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEECCBHH
T ss_pred             cCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEEcCHH
Confidence            9999999999988      45799999999875799999999999999          999999999999 999999876


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      .+
T Consensus       250 ev  251 (366)
T 3tui_C          250 EV  251 (366)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=2e-34  Score=256.83  Aligned_cols=162  Identities=19%  Similarity=0.160  Sum_probs=131.0

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      ++|+++||+++|     |+|+||+|++||+++|+||||||||||| |+|+|+        .++|+++.........+.+.
T Consensus         3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~   81 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLL-RCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR   81 (359)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred             cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHH-HHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence            379999999999     9999999999999999999999999999 999997        45777764321111122234


Q ss_pred             CeEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEE
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIG  113 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lll  113 (240)
                      .+|+||+..+++.+|+.+|+.+...                   +                       +..++.+|++||
T Consensus        82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLL  161 (359)
T 3fvq_A           82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELIL  161 (359)
T ss_dssp             CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            6999999999999999877654211                   0                       122689999999


Q ss_pred             EcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      +.++++.+.++.++.|+|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       162 LDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea----------~~~aDri~vl~~G~i~~~g~~~el  226 (359)
T 3fvq_A          162 LDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA----------LQYADRIAVMKQGRILQTASPHEL  226 (359)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHHCCEEEEEECCEEEEEeCHHHH
Confidence            999988      34677777777655799999999999999          999999999999 99999887654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=3.5e-34  Score=247.42  Aligned_cols=164  Identities=16%  Similarity=0.120  Sum_probs=126.0

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      ..++|+++||+++|      |++|||+|++||+++|+||||||||||+ ++|+|+        .++|+++..........
T Consensus         4 ~~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl-~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~   82 (275)
T 3gfo_A            4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLF-QNFNGILKPSSGRILFDNKPIDYSRKGIMKL   82 (275)
T ss_dssp             CCEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCCSHHHHHHH
T ss_pred             cCcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHcCCCCCCeEEEECCEECCcccccHHHH
Confidence            34689999999999      8999999999999999999999999999 999997        34565552111111111


Q ss_pred             cCCCeEEEccCc-eecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304           73 YAIDSVVTHDGA-KLPCWALPELTSFRQKL------------------------------------------GDDAYAKL  109 (240)
Q Consensus        73 ~~~~~~v~q~~~-~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p  109 (240)
                      ....+|+||++. .+...++.+++.+....                                          +..++.+|
T Consensus        83 ~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P  162 (275)
T 3gfo_A           83 RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP  162 (275)
T ss_dssp             HHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             hCcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            123589999752 23356777665443210                                          11258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++|||||||+      +..++++|++++++.|+|||++|||++++          ..+||||++|++ +++.+|+++.+
T Consensus       163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~----------~~~~drv~~l~~G~i~~~g~~~~~  231 (275)
T 3gfo_A          163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV----------PLYCDNVFVMKEGRVILQGNPKEV  231 (275)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG----------GGGCSEEEEEETTEEEEEECHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999988      45799999999732599999999999999          899999999999 99999987653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=7.1e-34  Score=254.94  Aligned_cols=157  Identities=24%  Similarity=0.194  Sum_probs=132.0

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++||+++|     |+++||++++||+++|+||||||||||| |+|+|+        .++|+++...++.   + +..
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~p~~G~I~i~G~~~~~~~~~---~-r~i   77 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLETITSGDLFIGEKRMNDTPPA---E-RGV   77 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCGG---G-SCE
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHH-HHHHcCCCCCCeEEEECCEECCCCCHH---H-CCE
Confidence            69999999999     8999999999999999999999999999 999997        3566665443332   1 235


Q ss_pred             eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL  114 (240)
                      +|+||+..+++.+|+.+|+.+....                                          +..++.+|++|||
T Consensus        78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL  157 (381)
T 3rlf_A           78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL  157 (381)
T ss_dssp             EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999887664221                                          1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +.++++.|+++.++.|+|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea----------~~~aDri~vl~~G~i~~~g~~~~l  221 (381)
T 3rlf_A          158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA----------MTLADKIVVLDAGRVAQVGKPLEL  221 (381)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEEeCHHHH
Confidence            99988      45788999999765699999999999999          999999999999 99988887653

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=8.4e-34  Score=244.01  Aligned_cols=161  Identities=17%  Similarity=0.121  Sum_probs=127.1

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++|+++|+++.|     |+++||+|++||+++|+||||||||||+ ++|+|+        .++|+++...+.....  .
T Consensus         9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~--~   85 (266)
T 4g1u_C            9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLL-RLLTGYLSPSHGECHLLGQNLNSWQPKALA--R   85 (266)
T ss_dssp             CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHH-HHHTSSSCCSSCEEEETTEETTTSCHHHHH--H
T ss_pred             cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEECCEECCcCCHHHHh--h
Confidence            3589999999999     9999999999999999999999999999 999997        2345444332222111  1


Q ss_pred             CCeEEEccCceecceecCcchhHHHh-----------------h-----------------------chhhhc------c
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQK-----------------L-----------------------GDDAYA------K  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~-----------------~-----------------------~~~l~~------~  108 (240)
                      ..+|++|...++..+++.+++.+...                 +                       +..++.      +
T Consensus        86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~  165 (266)
T 4g1u_C           86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT  165 (266)
T ss_dssp             HEEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred             eEEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence            24899998877676777665433210                 0                       112577      9


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|||||||+      +.+++++|++++++.++|||++|||++++          ..+|||+++|++ +++..|+++++
T Consensus       166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~----------~~~~d~v~vl~~G~i~~~g~~~~~  235 (266)
T 4g1u_C          166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLA----------ALYADRIMLLAQGKLVACGTPEEV  235 (266)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999999988      45799999999875568999999999999          899999999999 99999988754

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=9.4e-34  Score=239.56  Aligned_cols=161  Identities=20%  Similarity=0.151  Sum_probs=124.1

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhc-
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDT-   71 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~-   71 (240)
                      ||+++||+++|         |+++||++++||+++|+||||||||||+ ++|+|+        .++|+++...+..... 
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   79 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDLDDDELTK   79 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCceEEEECCEEcccCCHHHHHH
Confidence            58999999988         7899999999999999999999999999 999997        3455554433322211 


Q ss_pred             -ccCCCeEEEccCceecceecCcchhHHHhh----------------------------------------------chh
Q 026304           72 -RYAIDSVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------GDD  104 (240)
Q Consensus        72 -~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~  104 (240)
                       +....+|++|++.+++.+++.++..+....                                              +..
T Consensus        80 ~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra  159 (235)
T 3tif_A           80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (235)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             HhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence             112258999999988888887766442100                                              112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|||||||+      ..+++++|++++++.|+|||++|||++ .          ..+|||+++|++ ++...++
T Consensus       160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~----------~~~~d~i~~l~~G~i~~~~~  228 (235)
T 3tif_A          160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V----------ARFGERIIYLKDGEVEREEK  228 (235)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H----------HTTSSEEEEEETTEEEEEEE
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H----------HHhCCEEEEEECCEEEEEcC
Confidence            589999999999988      457999999997645999999999998 4          479999999999 8887776


Q ss_pred             cceee
Q 026304          178 RAFFT  182 (240)
Q Consensus       178 ~~~~~  182 (240)
                      ++.+.
T Consensus       229 ~~~~~  233 (235)
T 3tif_A          229 LRGFD  233 (235)
T ss_dssp             CC---
T ss_pred             hhhhc
Confidence            65543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=2.2e-33  Score=238.03  Aligned_cols=161  Identities=17%  Similarity=0.152  Sum_probs=125.0

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      ..+||+++|++++|     |+++||++++||+++|+||||||||||+ ++|+|+        .++|+++...++....+ 
T Consensus         3 ~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~-   80 (240)
T 1ji0_A            3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTL-SAIAGLVRAQKGKIIFNGQDITNKPAHVINR-   80 (240)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH-
T ss_pred             CCceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCceEEECCEECCCCCHHHHHh-
Confidence            34589999999999     8999999999999999999999999999 999997        24455443222111112 


Q ss_pred             CCCeEEEccCceecceecCcchhHHH------------------hh------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ------------------KL------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~------------------~~------------------------~~~l~~~p~l  111 (240)
                      ...+|++|+..+++.+|+.++..+..                  .+                        +..++.+|++
T Consensus        81 ~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l  160 (240)
T 1ji0_A           81 MGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL  160 (240)
T ss_dssp             TTEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            23589999988777766655433210                  00                        1125899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      |||||||+      +..++++|+++++ .|+|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       161 llLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~  225 (240)
T 1ji0_A          161 LMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGA----------LKVAHYGYVLETGQIVLEGKASE  225 (240)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHH----------HHHCSEEEEEETTEEEEEEEHHH
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEEEEEcCHHH
Confidence            99999988      4578999999976 699999999999999          899999999998 8877776654

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.98  E-value=3.9e-33  Score=238.73  Aligned_cols=160  Identities=16%  Similarity=0.120  Sum_probs=123.8

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .+||+++|++++|     |+++||++++||+++|+||||||||||+ ++|+|+        .++|+++...++....+. 
T Consensus         5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~-   82 (257)
T 1g6h_A            5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLI-NVITGFLKADEGRVYFENKDITNKEPAELYHY-   82 (257)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHH-
T ss_pred             CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEEECCEECCCCCHHHHHhC-
Confidence            4589999999999     8999999999999999999999999999 999997        234544422211111122 


Q ss_pred             CCeEEEccCceecceecCcchhHHH-------------------------h-------h---------------------
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ-------------------------K-------L---------------------  101 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~-------------------------~-------~---------------------  101 (240)
                      ..+|++|+..+++.+++.++..+..                         .       +                     
T Consensus        83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv  162 (257)
T 1g6h_A           83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLV  162 (257)
T ss_dssp             TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHH
T ss_pred             CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHH
Confidence            3589999887777666654432210                         0       0                     


Q ss_pred             --chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-ee
Q 026304          102 --GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       102 --~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                        +..++.+|++|||||||+      +..++++|+++++ .|+|||++|||++++          ..+||++++|++ ++
T Consensus       163 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~i  231 (257)
T 1g6h_A          163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIV----------LNYIDHLYVMFNGQI  231 (257)
T ss_dssp             HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTT----------GGGCSEEEEEETTEE
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHH----------HHhCCEEEEEECCEE
Confidence              112589999999999988      4579999999987 599999999999999          899999999998 88


Q ss_pred             eccCCcce
Q 026304          173 ELCGKRAF  180 (240)
Q Consensus       173 ~~~g~~~~  180 (240)
                      ...|+++.
T Consensus       232 ~~~g~~~~  239 (257)
T 1g6h_A          232 IAEGRGEE  239 (257)
T ss_dssp             EEEEESHH
T ss_pred             EEEeCHHH
Confidence            77776654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.98  E-value=5e-33  Score=238.80  Aligned_cols=160  Identities=18%  Similarity=0.175  Sum_probs=126.5

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccch-hcccC
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSK-DTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~-~~~~~   74 (240)
                      .||+++||+++|     |+++||+|++||+++|+||||||||||+ ++|+|+        .++|+++. .+... .....
T Consensus        23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~-~~~~~~~~~~~  100 (263)
T 2olj_A           23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFL-RCLNLLEDFDEGEIIIDGINLK-AKDTNLNKVRE  100 (263)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEESS-STTCCHHHHHH
T ss_pred             heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHH-HHHHcCCCCCCcEEEECCEECC-CccccHHHHhC
Confidence            379999999999     8999999999999999999999999999 999997        24555442 11111 11111


Q ss_pred             CCeEEEccCceecceecCcchhHHH-hh------------------------------------------chhhhccCcE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ-KL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~-~~------------------------------------------~~~l~~~p~l  111 (240)
                      ..+|++|+..+++.+++.+++.+.. ..                                          +..++.+|++
T Consensus       101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l  180 (263)
T 2olj_A          101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI  180 (263)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE
Confidence            2589999988888888877765521 00                                          1115899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||||||+      +..++++|+++++ +|+|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       181 llLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~  246 (263)
T 2olj_A          181 MLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEMGFA----------REVGDRVLFMDGGYIIEEGKPEDL  246 (263)
T ss_dssp             EEEESTTTTSCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence            99999988      4579999999987 599999999999999          899999999998 88877776543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.98  E-value=1.6e-32  Score=246.14  Aligned_cols=157  Identities=20%  Similarity=0.127  Sum_probs=131.4

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEe------eccchh
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAM------IKSSKD   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~------~~~~~~   70 (240)
                      +|+++|++++|     |+++||++++||+++|+||||||||||| |+|+|+        .++|+++..      .++.  
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--   79 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--   79 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHH-HHHHcCCCCCccEEEECCEECccccccccCCHh--
Confidence            69999999999     8999999999999999999999999999 999997        457777654      2221  


Q ss_pred             cccCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhcc
Q 026304           71 TRYAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAK  108 (240)
Q Consensus        71 ~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~  108 (240)
                       + +..+|+||+..+++.+++.+++.+....                                          +..++.+
T Consensus        80 -~-r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~  157 (372)
T 1g29_1           80 -D-RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRK  157 (372)
T ss_dssp             -G-SSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred             -H-CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence             2 2358999999999999998887663211                                          1125899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++||||||++      +.++++.|+++.++.|+|+|++|||++++          ..+|||+++|++ ++...|+++++
T Consensus       158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~l  227 (372)
T 1g29_1          158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA----------MTMGDRIAVMNRGVLQQVGSPDEV  227 (372)
T ss_dssp             CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH----------HHhCCEEEEEeCCEEEEeCCHHHH
Confidence            99999999988      45788999998764699999999999999          999999999999 99888887653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.97  E-value=1.1e-32  Score=235.93  Aligned_cols=159  Identities=19%  Similarity=0.159  Sum_probs=126.2

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccC
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~   74 (240)
                      .++|+++||+++|     |+++||++++|++++|+||||||||||+ ++|+|+.        ++|+++..  .....+ .
T Consensus        13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~--~~~~~~-~   88 (256)
T 1vpl_A           13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL-RIISTLIKPSSGIVTVFGKNVVE--EPHEVR-K   88 (256)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTT--CHHHHH-T
T ss_pred             CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCc--cHHHHh-h
Confidence            3589999999999     9999999999999999999999999999 9999972        34443321  011112 2


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll  112 (240)
                      ..+|++|+..+++.+|+.+++.+...+                                          +..++.+|++|
T Consensus        89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll  168 (256)
T 1vpl_A           89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLA  168 (256)
T ss_dssp             TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            358999998888888887776542110                                          11258999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||||+      +..++++|+++++ .|+|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       169 lLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~  233 (256)
T 1vpl_A          169 ILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEV----------EFLCDRIALIHNGTIVETGTVEEL  233 (256)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHH----------TTTCSEEEEEETTEEEEEEEHHHH
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH----------HHHCCEEEEEECCEEEEecCHHHH
Confidence            9999988      4578999999876 699999999999999          899999999999 88877776544

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.97  E-value=1e-32  Score=231.56  Aligned_cols=156  Identities=12%  Similarity=0.026  Sum_probs=122.2

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--ccc
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~   73 (240)
                      +||+++|++++|     ++++||++++|++++|+||||||||||+ ++|+|+        .++|+++...+....  .+.
T Consensus         3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~   81 (224)
T 2pcj_A            3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLL-YILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN   81 (224)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHH-HHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred             cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence            489999999999     8999999999999999999999999999 999997        245555433221111  111


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      ...+|++|+..+++.+++.++..+....                                          +..++.+|++
T Consensus        82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l  161 (224)
T 2pcj_A           82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL  161 (224)
T ss_dssp             HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE
T ss_pred             CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            2358999998888888887776542110                                          1115899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      |||||||+      +..++++|+++++ +|.|||++|||++++           .+||++++|++ ++...|+
T Consensus       162 llLDEPt~~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~-----------~~~d~v~~l~~G~i~~~g~  222 (224)
T 2pcj_A          162 LFADEPTGNLDSANTKRVMDIFLKINE-GGTSIVMVTHERELA-----------ELTHRTLEMKDGKVVGEIT  222 (224)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH-----------TTSSEEEEEETTEEEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHHHH-----------HhCCEEEEEECCEEEEEee
Confidence            99999988      4578999999987 499999999998876           68999999998 8776654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.97  E-value=6.7e-33  Score=237.92  Aligned_cols=161  Identities=19%  Similarity=0.153  Sum_probs=126.6

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEe----------
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAM----------   64 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~----------   64 (240)
                      .+||+++||+++|     ++++||+|++|++++|+||||||||||+ ++|+|+        .++|+++..          
T Consensus         4 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-k~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~   82 (262)
T 1b0u_A            4 ENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV   82 (262)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred             CceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence            4589999999999     8999999999999999999999999999 999997        345655431          


Q ss_pred             eccch--hcccCCCeEEEccCceecceecCcchhHHH-h-------------------h---------------------
Q 026304           65 IKSSK--DTRYAIDSVVTHDGAKLPCWALPELTSFRQ-K-------------------L---------------------  101 (240)
Q Consensus        65 ~~~~~--~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-~-------------------~---------------------  101 (240)
                      .+...  ..+ ...+|++|+..+++.+++.+++.+.. .                   +                     
T Consensus        83 ~~~~~~~~~~-~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qR  161 (262)
T 1b0u_A           83 ADKNQLRLLR-TRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQR  161 (262)
T ss_dssp             SCHHHHHHHH-HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHH
T ss_pred             cChhhHHHHh-cceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHH
Confidence            11110  112 22589999988888878776665421 0                   0                     


Q ss_pred             ---chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-e
Q 026304          102 ---GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-R  171 (240)
Q Consensus       102 ---~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~  171 (240)
                         +..++.+|++|||||||+      +..++++|+++++ .|+|||++|||++++          ..+||++++|++ +
T Consensus       162 v~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~  230 (262)
T 1b0u_A          162 VSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFA----------RHVSSHVIFLHQGK  230 (262)
T ss_dssp             HHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHH----------HHHCSEEEEEETTE
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCE
Confidence               111589999999999988      4578999999987 599999999999999          899999999999 8


Q ss_pred             eeccCCccee
Q 026304          172 CELCGKRAFF  181 (240)
Q Consensus       172 ~~~~g~~~~~  181 (240)
                      ++..|+++.+
T Consensus       231 i~~~g~~~~~  240 (262)
T 1b0u_A          231 IEEEGDPEQV  240 (262)
T ss_dssp             EEEEECHHHH
T ss_pred             EEEeCCHHHH
Confidence            8877776543

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.1e-32  Score=246.18  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=129.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++++||++++||+++|+||||||||||| |+|+|+        .++|+++...++.   + +..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~---~-r~i   77 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLL-YTIAGIYKPTSGKIYFDEKDVTELPPK---D-RNV   77 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-TTE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHH-HHHhcCCCCCceEEEECCEECCcCCHh---H-CcE
Confidence            69999999999     8999999999999999999999999999 999997        3455555333221   2 235


Q ss_pred             eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL  114 (240)
                      +|+||+..+++.+++.++..+....                                          +..++.+|++|||
T Consensus        78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL  157 (362)
T 2it1_A           78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLL  157 (362)
T ss_dssp             EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            8999999999999998887663210                                          1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +.++.+.|+++.++.|+|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~~  221 (362)
T 2it1_A          158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEA----------LAMADRIAVIREGEILQVGTPDEV  221 (362)
T ss_dssp             ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99988      45788999998764699999999999999          999999999999 99888887654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.97  E-value=8.9e-33  Score=246.52  Aligned_cols=157  Identities=16%  Similarity=0.061  Sum_probs=128.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     ++++||++++||+++|+||||||||||| |+|+|+        .++|+++...++.   + +..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~---~-r~i   77 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTL-LMLAGIYKPTSGEIYFDDVLVNDIPPK---Y-REV   77 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-TTE
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHH-HHHHCCCCCCccEEEECCEECCCCChh---h-CcE
Confidence            69999999999     8999999999999999999999999999 999997        3455554333221   2 235


Q ss_pred             eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL  114 (240)
                      +|+||+..+++.+|+.+++.+...                   +                       +..++.+|++|||
T Consensus        78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLL  157 (359)
T 2yyz_A           78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLF  157 (359)
T ss_dssp             EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            899999999999888877654211                   0                       1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +.++++.|+++.++.|+|+|++|||++++          ..+|||+++|++ ++...|+++++
T Consensus       158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~----------~~~adri~vl~~G~i~~~g~~~~l  221 (359)
T 2yyz_A          158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEA----------MTMASRIAVFNQGKLVQYGTPDEV  221 (359)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            99988      45788999998764699999999999999          999999999999 99888887653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.97  E-value=1.4e-32  Score=244.73  Aligned_cols=160  Identities=21%  Similarity=0.167  Sum_probs=131.1

Q ss_pred             CCceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304            7 KPAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus         7 ~~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      ..++|+++|++++|      |+++||+|++||+++|+||||||||||| |+|+|+        .++|+++...++   .+
T Consensus        11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~---~~   86 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTIL-RLIAGLERPTKGDVWIGGKRVTDLPP---QK   86 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTCCG---GG
T ss_pred             CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEECCEECCcCCh---hh
Confidence            35689999999998      7899999999999999999999999999 999997        345555432221   12


Q ss_pred             cCCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCc
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLD  110 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~  110 (240)
                       +..+|+||+..+++.+|+.++..+....                                          +..++.+|+
T Consensus        87 -r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~  165 (355)
T 1z47_A           87 -RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQ  165 (355)
T ss_dssp             -SSEEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             -CcEEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence             2358999999999999998887653210                                          112589999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +||||||++      +.++++.|+++.++.|+|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~l  233 (355)
T 1z47_A          166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEA----------LEVADRVLVLHEGNVEQFGTPEEV  233 (355)
T ss_dssp             EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            999999988      45788999998764699999999999999          999999999999 99888887653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.97  E-value=1.5e-32  Score=246.12  Aligned_cols=157  Identities=19%  Similarity=0.127  Sum_probs=123.0

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|++++|     |+++||++++||+++|+||||||||||| |+|+|+        .++|+++...++.   + +..
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~---~-r~i   85 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRIYFGDRDVTYLPPK---D-RNI   85 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-GTE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCceEEEECCEECCCCChh---h-CcE
Confidence            69999999999     8999999999999999999999999999 999997        3456555333221   2 235


Q ss_pred             eEEEccCceecceecCcchhHHHh-------------------h-----------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-------------------L-----------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-------------------~-----------------------~~~l~~~p~lllL  114 (240)
                      +|+||+..+++.+|+.+++.+...                   +                       +..++.+|++|||
T Consensus        86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL  165 (372)
T 1v43_A           86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM  165 (372)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            899999999999888877644210                   0                       1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||++      +.++++.|+++.++.|.|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       166 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a----------~~~adri~vl~~G~i~~~g~~~~l  229 (372)
T 1v43_A          166 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA----------MTMGDRIAVMNRGQLLQIGSPTEV  229 (372)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             cCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            99988      45788999998764599999999999999          999999999999 99888887654

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.97  E-value=3.1e-32  Score=242.19  Aligned_cols=157  Identities=18%  Similarity=0.149  Sum_probs=129.0

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ||+++|++++|    ++++||++++||+++|+||||||||||| |+|+|+        .++|+++...++   .+. ..+
T Consensus         1 ml~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~~~g~~i~~~~~---~~r-~ig   75 (348)
T 3d31_A            1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFL-ELIAGFHVPDSGRILLDGKDVTDLSP---EKH-DIA   75 (348)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHH-HHHHTSSCCSEEEEEETTEECTTSCH---HHH-TCE
T ss_pred             CEEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHH-HHHHcCCCCCCcEEEECCEECCCCch---hhC-cEE
Confidence            58999999998    8999999999999999999999999999 999997        345555432221   122 358


Q ss_pred             EEEccCceecceecCcchhHHHhh---------------------------------------chhhhccCcEEEEcCcc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKL---------------------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |+||+..+++.+|+.+++.+....                                       +..++.+|++||||||+
T Consensus        76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~  155 (348)
T 3d31_A           76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (348)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence            999999999999998887653210                                       11258999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +      +.++.+.|+++.++.|+|+|++|||++++          ..+|||+++|++ ++...|+++++
T Consensus       156 s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~----------~~~adri~vl~~G~i~~~g~~~~~  215 (348)
T 3d31_A          156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA----------RIMADRIAVVMDGKLIQVGKPEEI  215 (348)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH----------HHHCSEEEEESSSCEEEEECHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence            8      45788999998765699999999999999          999999999999 88888887654

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.97  E-value=5.1e-32  Score=241.40  Aligned_cols=161  Identities=20%  Similarity=0.098  Sum_probs=128.8

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccc-hhccc
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSS-KDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~-~~~~~   73 (240)
                      ||+++|++++|       |+++||++++||+++|+||||||||||| |+|+|+        .++|+++...... .....
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLL-r~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~   81 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHH-HHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence            69999999998       4599999999999999999999999999 999997        3567776541000 00111


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      +..+|+||+..+++.+++.++..+....                                          +..++.+|++
T Consensus        82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l  161 (353)
T 1oxx_K           82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (353)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence            2358999999999998888776542110                                          1125899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||||++      +.++++.|+++.++.|+|+|++|||++++          ..+||||++|++ ++...|+++++
T Consensus       162 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~----------~~~adri~vl~~G~i~~~g~~~~l  228 (353)
T 1oxx_K          162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI----------FAIADRVGVLVKGKLVQVGKPEDL  228 (353)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999988      45789999998764699999999999999          999999999999 88888887653

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.97  E-value=2.7e-32  Score=231.29  Aligned_cols=156  Identities=19%  Similarity=0.067  Sum_probs=122.7

Q ss_pred             eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304           10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      ||+++|++++|   ++++||++++ ++++|+||||||||||+ ++|+|+.        ++|+++...+   ..+ ...+|
T Consensus         1 ml~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~-~~i~~   74 (240)
T 2onk_A            1 MFLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFL-ELIAGIVKPDRGEVRLNGADITPLP---PER-RGIGF   74 (240)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSC---TTT-SCCBC
T ss_pred             CEEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHH-HHHhCCCCCCceEEEECCEECCcCc---hhh-CcEEE
Confidence            58999999999   9999999999 99999999999999999 9999972        3444432111   112 23589


Q ss_pred             EEccCceecceecCcchhHHH----------h-------h-----------------------chhhhccCcEEEEcCcc
Q 026304           79 VTHDGAKLPCWALPELTSFRQ----------K-------L-----------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~~~~~----------~-------~-----------------------~~~l~~~p~lllLDEP~  118 (240)
                      ++|+..+++.+++.++..+..          +       +                       +..++.+|++|||||||
T Consensus        75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  154 (240)
T 2onk_A           75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            999988888777766543310          0       0                       11258999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +      +..++++|++++++.|+|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~d~i~~l~~G~i~~~g~~~~~  214 (240)
T 2onk_A          155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA----------AMLADEVAVMLNGRIVEKGKLKEL  214 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence            8      45789999998754589999999999999          899999999999 88877776543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.97  E-value=5.9e-31  Score=226.39  Aligned_cols=160  Identities=15%  Similarity=0.110  Sum_probs=118.1

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch----------hCCceEEeeccchhcc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES----------DNGRNIAMIKSSKDTR   72 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~----------~~g~~i~~~~~~~~~~   72 (240)
                      .+||+++||+++|     ++++||+|++|++++|+||||||||||+ ++|+|+.          ++|+++...++....+
T Consensus        18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLS-ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            4589999999999     8999999999999999999999999999 9999972          2333322111111112


Q ss_pred             cCCCeEEEccCceecceecCcchhHH--------------------------Hhh-------------------------
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFR--------------------------QKL-------------------------  101 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~--------------------------~~~-------------------------  101 (240)
                      . ..+|++|++.+++.+++.++..+.                          ..+                         
T Consensus        97 ~-~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i  175 (267)
T 2zu0_C           97 E-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI  175 (267)
T ss_dssp             H-TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred             C-CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence            1 247899988776655443332110                          000                         


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eee
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCE  173 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~  173 (240)
                      +..++.+|++|||||||+      +..++++|+++++ .|+|||++|||++++          ..+ ||++++|++ ++.
T Consensus       176 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~----------~~~~~d~v~~l~~G~i~  244 (267)
T 2zu0_C          176 LQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRIL----------DYIKPDYVHVLYQGRIV  244 (267)
T ss_dssp             HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGGG----------GTSCCSEEEEEETTEEE
T ss_pred             HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHHH----------HhhcCCEEEEEECCEEE
Confidence            112589999999999988      4578888888865 589999999999998          776 999999998 888


Q ss_pred             ccCCcce
Q 026304          174 LCGKRAF  180 (240)
Q Consensus       174 ~~g~~~~  180 (240)
                      ..|+++.
T Consensus       245 ~~g~~~~  251 (267)
T 2zu0_C          245 KSGDFTL  251 (267)
T ss_dssp             EEECTTH
T ss_pred             EEcCHHH
Confidence            7777654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.97  E-value=7.3e-31  Score=223.73  Aligned_cols=157  Identities=15%  Similarity=0.083  Sum_probs=118.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc----------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE----------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl----------~~~g~~i~~~~~~~~~~~~   74 (240)
                      ||+++|++++|     |+++||++++|++++|+||||||||||+ ++|+|+          .++|+++...+.....+ .
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl-k~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~-~   80 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLG-KILAGDPEYTVERGEILLDGENILELSPDERAR-K   80 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH-T
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCceEEEECCEECCCCCHHHHHh-C
Confidence            79999999999     8999999999999999999999999999 999996          12343332221111112 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH---------------h---------h-----------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ---------------K---------L-----------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~---------------~---------~-----------------------~~~l~~  107 (240)
                      ..+|++|++.+++.+++.++..+..               .         +                       ...++.
T Consensus        81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~  160 (250)
T 2d2e_A           81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL  160 (250)
T ss_dssp             TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred             cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence            2478899887777666655442210               0         0                       111588


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhh-ccceeeecc-eeeccCCcc
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPL-ADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-ad~i~~l~~-~~~~~g~~~  179 (240)
                      +|++|||||||+      +..++++|+++.+ .|+|||++|||++++          ..+ ||++++|++ ++...|+++
T Consensus       161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~----------~~~~~d~v~~l~~G~i~~~g~~~  229 (250)
T 2d2e_A          161 EPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRIL----------NYIQPDKVHVMMDGRVVATGGPE  229 (250)
T ss_dssp             CCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGGG----------GTSCCSEEEEEETTEEEEEESHH
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHH----------HHhcCCEEEEEECCEEEEEeCHH
Confidence            999999999988      4578899998865 689999999999999          788 599999999 888777765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.97  E-value=3.7e-31  Score=228.97  Aligned_cols=160  Identities=14%  Similarity=0.039  Sum_probs=120.5

Q ss_pred             CceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEE--eeccchhcc
Q 026304            8 PAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIA--MIKSSKDTR   72 (240)
Q Consensus         8 ~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~--~~~~~~~~~   72 (240)
                      .+||+++||+++|     |+++||+|++||+++|+||||||||||+ ++|+|+        .++|+++.  ..+.. ..+
T Consensus        19 ~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~~~~~~~~-~~~   96 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLL-NILNAYEPATSGTVNLFGKMPGKVGYSAE-TVR   96 (279)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTBCCC---CCHH-HHH
T ss_pred             CceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCeEEEECCEEcccccCCHH-HHc
Confidence            4589999999999     8999999999999999999999999999 999997        24555442  21111 112


Q ss_pred             cCCCeEEEccCce-e-cceecCcchhHH-----------------------Hhh-----------------------chh
Q 026304           73 YAIDSVVTHDGAK-L-PCWALPELTSFR-----------------------QKL-----------------------GDD  104 (240)
Q Consensus        73 ~~~~~~v~q~~~~-~-~~~~~~~~~~~~-----------------------~~~-----------------------~~~  104 (240)
                       ...+|++|+..+ + ..+++.+++.+.                       ..+                       +..
T Consensus        97 -~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAra  175 (279)
T 2ihy_A           97 -QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARA  175 (279)
T ss_dssp             -TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred             -CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHH
Confidence             235899997542 2 223554433210                       000                       112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEE--EEEecChhhhhcccchHHHHHhhccceeeecc-eeecc
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTV--VVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELC  175 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tv--i~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~  175 (240)
                      ++.+|++|||||||+      +..++++|++++++ |+||  |++|||++++          ..+||++++|++ ++...
T Consensus       176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~----------~~~~d~v~~l~~G~i~~~  244 (279)
T 2ihy_A          176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEI----------TANFSKILLLKDGQSIQQ  244 (279)
T ss_dssp             HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGC----------CTTCCEEEEEETTEEEEE
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHH----------HHhCCEEEEEECCEEEEE
Confidence            589999999999988      45789999999874 8999  9999999999          899999999999 88888


Q ss_pred             CCccee
Q 026304          176 GKRAFF  181 (240)
Q Consensus       176 g~~~~~  181 (240)
                      |+++.+
T Consensus       245 g~~~~~  250 (279)
T 2ihy_A          245 GAVEDI  250 (279)
T ss_dssp             EEHHHH
T ss_pred             CCHHHH
Confidence            876543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.96  E-value=2.5e-30  Score=220.86  Aligned_cols=153  Identities=15%  Similarity=0.106  Sum_probs=120.1

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEc
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .||+++|++++|      ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+.        .....+|++|
T Consensus         3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl-~~l~Gl~~p~~G~I~--------~~~~i~~v~q   73 (253)
T 2nq2_C            3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLL-DLLLGIHRPIQGKIE--------VYQSIGFVPQ   73 (253)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHH-HHHTTSSCCSEEEEE--------ECSCEEEECS
T ss_pred             ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcEEE--------EeccEEEEcC
Confidence            379999999988      7899999999999999999999999999 99999732 222232        1123589999


Q ss_pred             cCceecceecCcchhHHH----------------h-------h-----------------------chhhhccCcEEEEc
Q 026304           82 DGAKLPCWALPELTSFRQ----------------K-------L-----------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~----------------~-------~-----------------------~~~l~~~p~lllLD  115 (240)
                      +..+++.+++.++..+..                .       +                       +..++.+|++||||
T Consensus        74 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD  153 (253)
T 2nq2_C           74 FFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD  153 (253)
T ss_dssp             CCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES
T ss_pred             CCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            887776666655443210                0       0                       11258999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||++      +..++++|+++.++.|+|||++|||++++          ..+||++++|++ + ...|+++++
T Consensus       154 EPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~----------~~~~d~v~~l~~G~-~~~g~~~~~  215 (253)
T 2nq2_C          154 EPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV----------VAIANKTLLLNKQN-FKFGETRNI  215 (253)
T ss_dssp             SSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHH----------HHHCSEEEEEETTE-EEEEEHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH----------HHhCCEEEEEeCCe-EecCCHHHH
Confidence            9988      45789999998764499999999999999          899999999998 8 777776543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.96  E-value=8.8e-31  Score=229.18  Aligned_cols=157  Identities=16%  Similarity=0.153  Sum_probs=123.8

Q ss_pred             ceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      ..|+++||+|+|      |+++||+|++|++++|+||||||||||+ ++|+|+        .++|.++..++.... | .
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~G~~i~~~~~~~~-r-~  128 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTIL-RLLFRFYDISSGCIRIDGQDISQVTQASL-R-S  128 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHH-HHHTTSSCCSEEEEEETTEETTSBCHHHH-H-H
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHH-HHHHcCCCCCCcEEEECCEEcccCCHHHH-h-c
Confidence            369999999999      8999999999999999999999999999 999997        356666544432221 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~  107 (240)
                      ..+|++|++.+|+. |+.+|+.+..                      .+                         +..++.
T Consensus       129 ~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~  207 (306)
T 3nh6_A          129 HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK  207 (306)
T ss_dssp             TEEEECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCccCcc-cHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence            35899999988854 6665543311                      00                         112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|||||||+      ...+++.|+++.+  ++|+|++|||++.+          .. ||+|++|++ +++..|++++
T Consensus       208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~----------~~-aD~i~vl~~G~iv~~G~~~e  274 (306)
T 3nh6_A          208 APGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRLSTV----------VN-ADQILVIKDGCIVERGRHEA  274 (306)
T ss_dssp             CCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSHHHH----------HT-CSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcChHHH----------Hc-CCEEEEEECCEEEEECCHHH
Confidence            999999999988      3478888888864  68999999999998          65 999999999 9999998875


Q ss_pred             ee
Q 026304          181 FT  182 (240)
Q Consensus       181 ~~  182 (240)
                      +.
T Consensus       275 l~  276 (306)
T 3nh6_A          275 LL  276 (306)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.96  E-value=2.5e-30  Score=222.91  Aligned_cols=158  Identities=12%  Similarity=0.068  Sum_probs=118.5

Q ss_pred             ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304            9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus         9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      .+|+++||+++|        |+++||+|++|++++|+||||||||||+ ++|+|+        .++|+++...+.. ..+
T Consensus        15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~i~~~~~~-~~~   92 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTGGKVLLDGEPLVQYDHH-YLH   92 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGBCHH-HHH
T ss_pred             ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEcccCCHH-HHh
Confidence            489999999987        6789999999999999999999999999 999997        2345444222111 111


Q ss_pred             cCCCeEEEccCceecceecCcchhHH-----------------------Hhh-------------------------chh
Q 026304           73 YAIDSVVTHDGAKLPCWALPELTSFR-----------------------QKL-------------------------GDD  104 (240)
Q Consensus        73 ~~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~~-------------------------~~~  104 (240)
                       ...+|++|++.+++. ++.+++.+.                       ..+                         +..
T Consensus        93 -~~i~~v~Q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAra  170 (271)
T 2ixe_A           93 -TQVAAVGQEPLLFGR-SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARA  170 (271)
T ss_dssp             -HHEEEECSSCCCCSS-BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHH
T ss_pred             -ccEEEEecCCccccc-cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHH
Confidence             225899998877653 554433210                       000                         112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|||||||+      +..++++|+++.++.|+|||++|||++.+          . .||++++|++ ++...|+
T Consensus       171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~----------~-~~d~v~~l~~G~i~~~g~  239 (271)
T 2ixe_A          171 LIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLA----------E-RAHHILFLKEGSVCEQGT  239 (271)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHH----------T-TCSEEEEEETTEEEEEEC
T ss_pred             HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEECC
Confidence            589999999999988      45788888888654589999999999988          5 4999999999 8887777


Q ss_pred             ccee
Q 026304          178 RAFF  181 (240)
Q Consensus       178 ~~~~  181 (240)
                      ++.+
T Consensus       240 ~~~l  243 (271)
T 2ixe_A          240 HLQL  243 (271)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.96  E-value=3.5e-30  Score=219.41  Aligned_cols=160  Identities=16%  Similarity=0.127  Sum_probs=121.5

Q ss_pred             ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccc-----hhcccCCCeEEEc
Q 026304            9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSS-----KDTRYAIDSVVTH   81 (240)
Q Consensus         9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~-----~~~~~~~~~~v~q   81 (240)
                      .||+++|++++. ++++||++++|++++|+||||||||||+ ++|+|+. ..|. +......     ........+|++|
T Consensus         3 ~~l~~~~l~~~~vl~~vsl~i~~Ge~~~liG~NGsGKSTLl-k~l~Gl~~p~G~-i~~~g~~~~~~~~~~~~~~i~~v~q   80 (249)
T 2qi9_C            3 IVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGS-IQFAGQPLEAWSATKLALHRAYLSQ   80 (249)
T ss_dssp             EEEEEEEEEETTTEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCEEE-EEETTEEGGGSCHHHHHHHEEEECS
T ss_pred             cEEEEEceEEEEEEeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCeE-EEECCEECCcCCHHHHhceEEEECC
Confidence            379999999864 9999999999999999999999999999 9999973 1232 2211110     0011112589999


Q ss_pred             cCceecceecCcchhHH--------------Hhh-----------------------chhhhccCc-------EEEEcCc
Q 026304           82 DGAKLPCWALPELTSFR--------------QKL-----------------------GDDAYAKLD-------VIGIDEA  117 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--------------~~~-----------------------~~~l~~~p~-------lllLDEP  117 (240)
                      +..+++.+++.+++.+.              ..+                       +..++.+|+       +||||||
T Consensus        81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEP  160 (249)
T 2qi9_C           81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP  160 (249)
T ss_dssp             CCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESST
T ss_pred             CCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECC
Confidence            98877777776554321              000                       112588999       9999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |+      +..++++|+++.+ +|+|||++|||++++          ..+||++++|++ ++...|+++.+
T Consensus       161 ts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~~  220 (249)
T 2qi9_C          161 MNSLDVAQQSALDKILSALSQ-QGLAIVMSSHDLNHT----------LRHAHRAWLLKGGKMLASGRREEV  220 (249)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHHH
Confidence            88      4578999999976 599999999999999          899999999998 88877776543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.96  E-value=3.3e-30  Score=218.80  Aligned_cols=155  Identities=16%  Similarity=0.127  Sum_probs=117.3

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~   75 (240)
                      ||+++|++++|      ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++...+..  .....
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g~~~~~~~~~--~~~~~   77 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLE--NWRSQ   77 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHH-HHHTTSSCCSBSCEEETTEESTTTSCS--CCTTT
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHH--HHHhh
Confidence            58999999998      8899999999999999999999999999 9999972        344443221111  11223


Q ss_pred             CeEEEccCceecceecCcchhHH--------------Hh----------------------------------hchhhhc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR--------------QK----------------------------------LGDDAYA  107 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~--------------~~----------------------------------~~~~l~~  107 (240)
                      .+|++|++.+++. |+.+++.+.              ..                                  ++..++.
T Consensus        78 i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~  156 (243)
T 1mv5_A           78 IGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR  156 (243)
T ss_dssp             CCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCccccc-cHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence            5899998877653 554443221              00                                  0112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|||||||+      ...+++.|+++.  .|+|||++|||++.+          . .||++++|++ ++...|+++.
T Consensus       157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~  223 (243)
T 1mv5_A          157 NPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRLSTI----------V-DADKIYFIEKGQITGSGKHNE  223 (243)
T ss_dssp             CCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSHHHH----------H-HCSEEEEEETTEECCCSCHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCChHHH----------H-hCCEEEEEECCEEEEeCCHHH
Confidence            999999999988      457899999886  489999999999987          5 5999999999 8887787654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       224 ~  224 (243)
T 1mv5_A          224 L  224 (243)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=99.96  E-value=1.3e-29  Score=207.20  Aligned_cols=176  Identities=46%  Similarity=0.755  Sum_probs=149.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      ..|+++.|.||+||||||.|++.+..+...|+.+..+++..+.|+. .+++++.+...++..+....++...     ..+
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~~~A~~~~~~~d~~~~-----~~~   91 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQE-----ALG   91 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHHSEEEEESSGGGGHHH-----HHT
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCcccceecCCHHHHHHh-----ccC
Confidence            3699999999999999977769998888889999988888777765 4566655444444444444444433     357


Q ss_pred             CcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecCC
Q 026304          109 LDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTEE  188 (240)
Q Consensus       109 p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~~  188 (240)
                      .++|++||.+|+.++.+.+..+++ .|+.||++++|.++.+++|+++.+|..+||+|..|+..|..||.+++++.|+..+
T Consensus        92 ~DvIlIDEaQFfk~~ve~~~~L~~-~gk~VI~~GL~~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~Cg~~A~~~~R~~~~  170 (195)
T 1w4r_A           92 VAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGTE  170 (195)
T ss_dssp             CSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEEEESBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSCC
T ss_pred             CCEEEEEchhhhHHHHHHHHHHHH-CCCeEEEEecccccccccchhHHHHHHhcCeEEEeeeEecccCCeeeeEEEEcCC
Confidence            899999999998668888889886 8999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEeCCcceEEeecchhhccC
Q 026304          189 TETEIIGGADVYMPVCRQHYVNG  211 (240)
Q Consensus       189 ~~~~~~g~~~~y~~~c~~~~~~~  211 (240)
                      ++++.+||++.|.++||+||..+
T Consensus       171 ~~~i~IGg~e~Y~~~CR~c~~~~  193 (195)
T 1w4r_A          171 KEVEVIGGADKYHSVCRLCYFKK  193 (195)
T ss_dssp             CSSCCCCCTTTEEEECHHHHTC-
T ss_pred             CCEEEECCCCcEEEccHHHhhcc
Confidence            99999999999999999999754

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.96  E-value=5.4e-30  Score=218.05  Aligned_cols=155  Identities=18%  Similarity=0.136  Sum_probs=116.8

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      -++++||+++|       |+++||+|++||+++|+||||||||||+ ++|+|+        .++|+++...+... .+ .
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~i~g~~~~~~~~~~-~~-~   83 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFYIPENGQVLIDGHDLALADPNW-LR-R   83 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHH-HH-H
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHH-HH-h
Confidence            58999999998       7899999999999999999999999999 999997        23454432221111 11 2


Q ss_pred             CCeEEEccCceecceecCcchhHH----------------------Hh---------------h----------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR----------------------QK---------------L----------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~----------------------~~---------------~----------~~~l~~  107 (240)
                      ..+|++|++.+++ .|+.+++.+.                      ..               +          +..++.
T Consensus        84 ~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~  162 (247)
T 2ff7_A           84 QVGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN  162 (247)
T ss_dssp             HEEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             cEEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence            2589999887765 3555443220                      00               0          112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|||||||+      ...++++|+++.  .|+|||++|||++.+          . .||++++|++ ++...|++++
T Consensus       163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~  229 (247)
T 2ff7_A          163 NPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRLSTV----------K-NADRIIVMEKGKIVEQGKHKE  229 (247)
T ss_dssp             CCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSGGGG----------T-TSSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHHH----------H-hCCEEEEEECCEEEEECCHHH
Confidence            999999999988      457889999884  489999999999987          5 5999999999 8887777654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       230 l  230 (247)
T 2ff7_A          230 L  230 (247)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.96  E-value=8.8e-30  Score=218.93  Aligned_cols=155  Identities=19%  Similarity=0.128  Sum_probs=116.3

Q ss_pred             eEEEcceeEee----------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhc
Q 026304           10 AVTTNQVNSGR----------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDT   71 (240)
Q Consensus        10 ~l~~~~ls~~~----------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~   71 (240)
                      ||+++|++++|          ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++..   . ..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~~~~---~-~~   76 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLL-QIVAGLIEPTSGDVLYDGERKKG---Y-EI   76 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCH---H-HH
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCCcEEEECCEECch---H-Hh
Confidence            68999999876          5689999999999999999999999999 9999972        34443321   1 11


Q ss_pred             ccCCCeEEEccC-ceecceecCcchhHH------------------Hh--h-----------------------chhhhc
Q 026304           72 RYAIDSVVTHDG-AKLPCWALPELTSFR------------------QK--L-----------------------GDDAYA  107 (240)
Q Consensus        72 ~~~~~~~v~q~~-~~~~~~~~~~~~~~~------------------~~--~-----------------------~~~l~~  107 (240)
                      + ...+|++|++ ..+..+++.++..+.                  ..  +                       ...++.
T Consensus        77 ~-~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~  155 (266)
T 2yz2_A           77 R-RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH  155 (266)
T ss_dssp             G-GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             h-hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence            2 2358999974 333334443332210                  00  0                       112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|||||||+      +..++++|+++++ .|.|||++|||++++          ..+||++++|++ ++...|+++.
T Consensus       156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tii~vtHd~~~~----------~~~~d~v~~l~~G~i~~~g~~~~  224 (266)
T 2yz2_A          156 EPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKTVILISHDIETV----------INHVDRVVVLEKGKKVFDGTRME  224 (266)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCTTT----------GGGCSEEEEEETTEEEEEEEHHH
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEeCCHHH
Confidence            999999999988      4578999999987 499999999999999          889999999998 8887777654


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       225 ~  225 (266)
T 2yz2_A          225 F  225 (266)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.96  E-value=8.7e-30  Score=212.36  Aligned_cols=145  Identities=11%  Similarity=0.103  Sum_probs=114.3

Q ss_pred             ceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCC
Q 026304            9 AAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus         9 ~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~   76 (240)
                      .+|+++|++++|    ++++||+|++|++++|+||||||||||+ ++|+|+.        ++|+++.      ..+ ...
T Consensus         9 ~~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLl-k~l~Gl~~p~~G~I~~~g~~~~------~~~-~~i   80 (214)
T 1sgw_A            9 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLL-KTISTYLKPLKGEIIYNGVPIT------KVK-GKI   80 (214)
T ss_dssp             CEEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGG------GGG-GGE
T ss_pred             ceEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCeEEEECCEEhh------hhc-CcE
Confidence            489999999998    8999999999999999999999999999 9999972        2343321      112 235


Q ss_pred             eEEEccCceecceecCcchhHHHh-----------------h----------------------chhhhccCcEEEEcCc
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQK-----------------L----------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~-----------------~----------------------~~~l~~~p~lllLDEP  117 (240)
                      +|++|++.+++.+++.+++.+...                 +                      ...++.+|++||||||
T Consensus        81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP  160 (214)
T 1sgw_A           81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP  160 (214)
T ss_dssp             EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            899999888777777666544210                 0                      1125899999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeeccee
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARC  172 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~  172 (240)
                      ++      +..++++|+++.+ .|+|||++|||++++          ..+||+++.+..++
T Consensus       161 ts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~~~----------~~~~d~v~~~~~~~  210 (214)
T 1sgw_A          161 VVAIDEDSKHKVLKSILEILK-EKGIVIISSREELSY----------CDVNENLHKYSTKI  210 (214)
T ss_dssp             TTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSCCTT----------SSEEEEGGGGBC--
T ss_pred             CcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEeCCcc
Confidence            88      4679999999876 489999999999999          89999999876543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.95  E-value=2.3e-29  Score=215.63  Aligned_cols=156  Identities=13%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             ceEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~   73 (240)
                      .+|+++||+++|        |+++||+|++|++++|+||||||||||+ ++|+|+.       ++|+++...+.. ..+ 
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~~~G~I~i~g~~i~~~~~~-~~~-   92 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-KLLYRFYDAEGDIKIGGKNVNKYNRN-SIR-   92 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGBCHH-HHH-
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHH-HHHhccCCCCeEEEECCEEhhhcCHH-HHh-
Confidence            479999999988        6789999999999999999999999999 9999973       233333211111 112 


Q ss_pred             CCCeEEEccCceecceecCcchhHH----------H---h----------------------------------hchhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR----------Q---K----------------------------------LGDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~----------~---~----------------------------------~~~~l~  106 (240)
                      ...+|++|++.+++ .|+.+++.+.          .   .                                  ++..++
T Consensus        93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  171 (260)
T 2ghi_A           93 SIIGIVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL  171 (260)
T ss_dssp             TTEEEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred             ccEEEEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence            23589999987765 3655443220          0   0                                  011258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|||||||+      ...+++.|+++.  .++|||++|||++.+          . .||++++|++ ++...|+++
T Consensus       172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~tviivtH~~~~~----------~-~~d~i~~l~~G~i~~~g~~~  238 (260)
T 2ghi_A          172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIAHRLSTI----------S-SAESIILLNKGKIVEKGTHK  238 (260)
T ss_dssp             HCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGS----------T-TCSEEEEEETTEEEEEECHH
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCHHHH----------H-hCCEEEEEECCEEEEECCHH
Confidence            9999999999988      457888888885  379999999999988          5 5999999999 888777765


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      .+
T Consensus       239 ~l  240 (260)
T 2ghi_A          239 DL  240 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=99.95  E-value=3e-28  Score=201.65  Aligned_cols=179  Identities=32%  Similarity=0.589  Sum_probs=144.1

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      ..|.+..|.||+||||||.|++.+..+...|+++..+.+..+.|++...++++.+...++..+....++...+    ..+
T Consensus        26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i----~~~  101 (219)
T 3e2i_A           26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD----LTN  101 (219)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC----CTT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH----hcC
Confidence            5799999999999999995558888888888888888877777776556777877777776666544443322    358


Q ss_pred             CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304          109 LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE  187 (240)
Q Consensus       109 p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~  187 (240)
                      ++++++||.+|+. ++++.+.++++ .|+.||+.+.|.+|.+++|+++.+|..+||+|..|+..|..||.+++++.|+.+
T Consensus       102 ~dvV~IDEaQFf~~~~v~~l~~la~-~gi~Vi~~GLd~DF~~~~F~~~~~Ll~~Ad~v~kl~aiC~~CG~~A~~~~R~~~  180 (219)
T 3e2i_A          102 VDVIGIDEVQFFDDEIVSIVEKLSA-DGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLIN  180 (219)
T ss_dssp             CSEEEECCGGGSCTHHHHHHHHHHH-TTCEEEEEEESBCTTSCBCTTHHHHHHHCSEEEEECEECTTTCSEECEEEEEET
T ss_pred             CCEEEEechhcCCHHHHHHHHHHHH-CCCEEEEeecccccccCCCccHHHHHHhcceEEEeeeEccCCCCcceEEEEEEC
Confidence            8999999999976 68999999996 899999999999999999999999999999999999999999999999999976


Q ss_pred             C------CcEEEeCCcceEEeecchhhccCc
Q 026304          188 E------TETEIIGGADVYMPVCRQHYVNGQ  212 (240)
Q Consensus       188 ~------~~~~~~g~~~~y~~~c~~~~~~~~  212 (240)
                      +      ++++.+|+++.|.++||+||....
T Consensus       181 g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~~~  211 (219)
T 3e2i_A          181 GKPAKIDDPIILVGANESYEPRCRAHHIVAP  211 (219)
T ss_dssp             TEECBTTCCSCCSSCCEEEEEECGGGCCCBC
T ss_pred             CcccccCCCEEEECCCccEEEcCHHhhcCcc
Confidence            3      677889999999999999997653

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.95  E-value=3e-29  Score=226.03  Aligned_cols=156  Identities=12%  Similarity=0.040  Sum_probs=119.3

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccC
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~   74 (240)
                      ..|+++||+++|       |+++||+|++||+++|+||||||||||| ++|+|+.       ++|+++...++... +. 
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLL-r~iaGl~~~~G~I~i~G~~i~~~~~~~~-rr-   94 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLL-SAFLRLLNTEGEIQIDGVSWDSITLEQW-RK-   94 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTCSEEEEEEEESSCBTTSSCHHHH-HH-
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHH-HHHhCCCCCCeEEEECCEECCcCChHHH-hC-
Confidence            479999999999       8999999999999999999999999999 9999973       45555433332211 22 


Q ss_pred             CCeEEEccCceecceecCcchhHH------------Hh------------------------h----------chhhhcc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFR------------QK------------------------L----------GDDAYAK  108 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~------------~~------------------------~----------~~~l~~~  108 (240)
                      ..+|+||+..+|+ .++.+|+.+.            ..                        +          +..++.+
T Consensus        95 ~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~  173 (390)
T 3gd7_A           95 AFGVIPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK  173 (390)
T ss_dssp             TEEEESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence            3589999998886 4665544210            00                        1          1226899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++||||||++      +.++.+.|+++.  .++|+|++|||++.+           ..||||++|++ ++...|+++++
T Consensus       174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e~~-----------~~aDri~vl~~G~i~~~g~~~el  240 (390)
T 3gd7_A          174 AKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIEAM-----------LECDQFLVIEENKVRQYDSILEL  240 (390)
T ss_dssp             CCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSGGG-----------TTCSEEEEEETTEEEEESSHHHH
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence            99999999988      346777777653  479999999998755           66999999999 99999987654

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.95  E-value=1.1e-28  Score=207.69  Aligned_cols=151  Identities=20%  Similarity=0.194  Sum_probs=109.4

Q ss_pred             CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEE
Q 026304            8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVV   79 (240)
Q Consensus         8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v   79 (240)
                      ..+|+++|++++|       |+++||+|++|++++|+||||||||||+ ++|+|+.. ..-.+...        +..+|+
T Consensus         4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~i~~~--------g~i~~v   74 (229)
T 2pze_A            4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHS--------GRISFC   74 (229)
T ss_dssp             CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEEC--------SCEEEE
T ss_pred             cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCccEEEEC--------CEEEEE
Confidence            3489999999998       7899999999999999999999999999 99999732 21222211        124778


Q ss_pred             EccCceecceecCcchhHH------------------H----------------------------hhchhhhccCcEEE
Q 026304           80 THDGAKLPCWALPELTSFR------------------Q----------------------------KLGDDAYAKLDVIG  113 (240)
Q Consensus        80 ~q~~~~~~~~~~~~~~~~~------------------~----------------------------~~~~~l~~~p~lll  113 (240)
                      +|++.+++. ++.++..+.                  .                            .++..++.+|++||
T Consensus        75 ~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lll  153 (229)
T 2pze_A           75 SQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL  153 (229)
T ss_dssp             CSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             ecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            887766553 544433210                  0                            00122689999999


Q ss_pred             EcCccC------hHHHHHHH-HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          114 IDEAQF------FEDLYEFC-CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       114 LDEP~~------~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||++      ...+++.+ .++.  .++|||++|||++++          . .||++++|++ ++...|+++.+
T Consensus       154 LDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~~  216 (229)
T 2pze_A          154 LDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEHL----------K-KADKILILHEGSSYFYGTFSEL  216 (229)
T ss_dssp             EESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHHH----------H-HCSEEEEEETTEEEEEECHHHH
T ss_pred             EECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHHH----------H-hCCEEEEEECCEEEEECCHHHH
Confidence            999988      23455542 3332  378999999999887          5 5999999999 88877776543

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=99.95  E-value=1.9e-27  Score=197.08  Aligned_cols=179  Identities=35%  Similarity=0.582  Sum_probs=135.7

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      -.+|.+..+.||+||||||.+++.+..+...|+++..+.+..+.|++...++.+.+...+...+.+..++...+    ..
T Consensus        25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~----~~  100 (214)
T 2j9r_A           25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHI----TE  100 (214)
T ss_dssp             CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGC----CS
T ss_pred             CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHH----hc
Confidence            46799999999999999999988888888889998888777776665444555554444444443332222211    12


Q ss_pred             cCcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304          108 KLDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT  186 (240)
Q Consensus       108 ~p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~  186 (240)
                      +.++|++||.+++. ++++.+.++++ .|+.||++++|.+|.+++|+++.+|.++||.|..|+..|..||.+++++.|+.
T Consensus       101 ~~dvViIDEaQF~~~~~V~~l~~l~~-~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~aiC~~Cg~~A~~~~R~~  179 (214)
T 2j9r_A          101 EMDVIAIDEVQFFDGDIVEVVQVLAN-RGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQAVCSACGSPASRTQRLI  179 (214)
T ss_dssp             SCCEEEECCGGGSCTTHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCCBCTTTSSBCCEEEEEE
T ss_pred             CCCEEEEECcccCCHHHHHHHHHHhh-CCCEEEEEecccccccCccccHHHHHHhcccEEeeeeEecCcCCcceEEEEEe
Confidence            58999999999963 55688999887 69999999999999999999999999999999999999999999999999997


Q ss_pred             CCCc------EEEeCCcceEEeecchhhccC
Q 026304          187 EETE------TEIIGGADVYMPVCRQHYVNG  211 (240)
Q Consensus       187 ~~~~------~~~~g~~~~y~~~c~~~~~~~  211 (240)
                      ++.+      ++.+|+++.|.++||+||...
T Consensus       180 ~g~~a~~~g~~i~iGg~e~Y~~~CR~c~~~~  210 (214)
T 2j9r_A          180 DGEPAAFDDPIILVGASESYEPRCRHCHAVP  210 (214)
T ss_dssp             TTEECCTTSCSCCCCSTTTEEEECTTTCCCC
T ss_pred             CCCccccCCCEEEECCCCcEEEcchHhhcCc
Confidence            6544      788999999999999999753

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=99.94  E-value=1.2e-26  Score=190.23  Aligned_cols=177  Identities=33%  Similarity=0.594  Sum_probs=135.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      .+|.++.++||+||||||.+++.+..+...|+.+..+.+..+.|++...++.+.+...+...+.+..++...+.    .+
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~----~~   81 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE----ED   81 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC----TT
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh----cc
Confidence            57999999999999999998788887778898888887666666554445555554444444444333333221    25


Q ss_pred             CcEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304          109 LDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE  187 (240)
Q Consensus       109 p~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~  187 (240)
                      .++|++||.+++ .++++.++++++ .|+.||++++|.++.+++|+.+..|.++||.|..|+..|..||.+++++.|+..
T Consensus        82 ~dvViIDEaqfl~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~~iC~~Cg~~a~~~~r~~~  160 (191)
T 1xx6_A           82 TEVIAIDEVQFFDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQAICVVCGNPATRTQRLIN  160 (191)
T ss_dssp             CSEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCEECTTTSSEECEEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeeeeEccccCCcceEEEEEcC
Confidence            799999999996 466888999887 599999999999999999999999999999999999999899999999999876


Q ss_pred             CCc------EEEeCCcceEEeecchhhcc
Q 026304          188 ETE------TEIIGGADVYMPVCRQHYVN  210 (240)
Q Consensus       188 ~~~------~~~~g~~~~y~~~c~~~~~~  210 (240)
                      +..      ++.+||.+.|.++||+||..
T Consensus       161 g~~~~~~~~~v~igg~~~Y~~~Cr~~~~~  189 (191)
T 1xx6_A          161 GKPAFYDDPVVLIGAMESYEARCRKCHVV  189 (191)
T ss_dssp             TEECCTTCCCC-----EEEEEECTTTCCC
T ss_pred             CCccccCCCEEEECCcCcEEEcchHhhcC
Confidence            644      78899999999999999974

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.94  E-value=3.5e-28  Score=205.63  Aligned_cols=149  Identities=16%  Similarity=0.142  Sum_probs=107.6

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEc
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      +|+++|++++|       ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+...        +..+|++|
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~I~~~--------g~i~~v~Q   73 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLL-SALLAEMDKVEGHVAIK--------GSVAYVPQ   73 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTCSEEEEEEEEEC--------SCEEEECS
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCceEEEC--------CEEEEEcC
Confidence            69999999988       7899999999999999999999999999 99999731 11122111        12467777


Q ss_pred             cCceecceecCcchhHH----------------------------------------------HhhchhhhccCcEEEEc
Q 026304           82 DGAKLPCWALPELTSFR----------------------------------------------QKLGDDAYAKLDVIGID  115 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~----------------------------------------------~~~~~~l~~~p~lllLD  115 (240)
                      ++.+ ...++.+++.+.                                              ..++..++.+|++||||
T Consensus        74 ~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD  152 (237)
T 2cbz_A           74 QAWI-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD  152 (237)
T ss_dssp             SCCC-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred             CCcC-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            6643 234443332110                                              00122368999999999


Q ss_pred             CccC------hHHHHHHHH---HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          116 EAQF------FEDLYEFCC---NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       116 EP~~------~~~i~~~l~---~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||++      ...+++.+.   ++ . .|+|||++|||++.+          . .||++++|++ ++...|+++.+
T Consensus       153 EPts~LD~~~~~~i~~~l~~~~~~-~-~~~tviivtH~~~~~----------~-~~d~v~~l~~G~i~~~g~~~~~  215 (237)
T 2cbz_A          153 DPLSAVDAHVGKHIFENVIGPKGM-L-KNKTRILVTHSMSYL----------P-QVDVIIVMSGGKISEMGSYQEL  215 (237)
T ss_dssp             STTTTSCHHHHHHHHHHTTSTTST-T-TTSEEEEECSCSTTG----------G-GSSEEEEEETTEEEEEECHHHH
T ss_pred             CcccccCHHHHHHHHHHHHHHHhh-c-CCCEEEEEecChHHH----------H-hCCEEEEEeCCEEEEeCCHHHH
Confidence            9988      335666663   22 2 489999999999987          5 6999999999 88877776543

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=99.94  E-value=4.1e-27  Score=196.84  Aligned_cols=178  Identities=46%  Similarity=0.752  Sum_probs=141.1

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      -..|.+..+.|++||||||.|++.+..+...|+++..+.+..+.|++ ..++++.+.......+....++...     +.
T Consensus        16 ~~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~-----~~   89 (234)
T 2orv_A           16 KTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQE-----AL   89 (234)
T ss_dssp             --CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHH-----HT
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHH-----hc
Confidence            34699999999999999998878888888889998888877777776 5566666554444444433332222     35


Q ss_pred             cCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeecC
Q 026304          108 KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKTE  187 (240)
Q Consensus       108 ~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~~  187 (240)
                      +.+++++||.+++..+.++++.+.+ .|+.||++++|.+|.+++|+++.+|..+||.|..|+..|..||.++.++.|+..
T Consensus        90 ~~dvViIDEaQF~~~v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~VtelkaIC~~Cg~~A~~t~R~~~  168 (234)
T 2orv_A           90 GVAVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLTAVCMECFREAAYTKRLGT  168 (234)
T ss_dssp             TCSEEEESSGGGCTTHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECCEECTTTCSEECEEEESSC
T ss_pred             cCCEEEEEchhhhhhHHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeeeeEecCcCCcceEEEEEcC
Confidence            7899999999997667777777776 799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEeCCcceEEeecchhhccCc
Q 026304          188 ETETEIIGGADVYMPVCRQHYVNGQ  212 (240)
Q Consensus       188 ~~~~~~~g~~~~y~~~c~~~~~~~~  212 (240)
                      +++++.+|+++.|.++||+||....
T Consensus       169 ~~~~i~IGg~e~Y~~~CR~c~~~~~  193 (234)
T 2orv_A          169 EKEVEVIGGADKYHSVCRLCYFKKA  193 (234)
T ss_dssp             CCSSCCCCCTTTEEEECHHHHHC--
T ss_pred             CCCEEEECCCCcEEEccHHhhhccc
Confidence            9999999999999999999997543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.94  E-value=1.2e-27  Score=205.23  Aligned_cols=154  Identities=17%  Similarity=0.082  Sum_probs=112.2

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh--cccCCCe-
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD--TRYAIDS-   77 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~--~~~~~~~-   77 (240)
                      ||+++|++++|         ++++||+++ |++++|+||||||||||+ ++|+|+....-.+........  ......+ 
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLl-k~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~   78 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLL-RAISGLLPYSGNIFINGMEVRKIRNYIRYST   78 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHH-HHHTTSSCCEEEEEETTEEGGGCSCCTTEEE
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHH-HHHhCCCCCCcEEEECCEECcchHHhhheEE
Confidence            58899999876         678999999 999999999999999999 999997421112221110000  1122357 


Q ss_pred             EEEccCceecceecCcchhHHHh---------------h------------------------chhhhccCcEEEEcCcc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK---------------L------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~---------------~------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |++|++.+  .+++.++..+...               +                        +..++.+|++|||||||
T Consensus        79 ~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt  156 (263)
T 2pjz_A           79 NLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF  156 (263)
T ss_dssp             CCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred             EeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence            88998765  5566655543210               0                        11258999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcc-ceeeecc-eeeccCCccee
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLAD-TVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad-~i~~l~~-~~~~~g~~~~~  181 (240)
                      +      +..++++|+++.   . |||++|||++++          ..+|| ++++|++ ++...|+++++
T Consensus       157 s~LD~~~~~~l~~~L~~~~---~-tviivtHd~~~~----------~~~~d~~i~~l~~G~i~~~g~~~~l  213 (263)
T 2pjz_A          157 ENVDAARRHVISRYIKEYG---K-EGILVTHELDML----------NLYKEYKAYFLVGNRLQGPISVSEL  213 (263)
T ss_dssp             TTCCHHHHHHHHHHHHHSC---S-EEEEEESCGGGG----------GGCTTSEEEEEETTEEEEEEEHHHH
T ss_pred             cccCHHHHHHHHHHHHHhc---C-cEEEEEcCHHHH----------HHhcCceEEEEECCEEEEecCHHHH
Confidence            8      346777776653   2 999999999999          89999 9999999 88888887654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=9.8e-28  Score=226.83  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=122.9

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      ..|+++|++++|       |+|+||++++||+++|+||||||||||+ ++|.|+        .++|+++...+.... | 
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll-~~l~g~~~~~~G~i~i~g~~i~~~~~~~~-r-  416 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDELDVRTVKLKDL-R-  416 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHH-HTTTTSSCCSEEEEEESSSBGGGBCHHHH-H-
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHH-HHHhCCccCCCcEEEECCEEcccCCHHHH-H-
Confidence            369999999998       8999999999999999999999999999 999997        346666544432221 2 


Q ss_pred             CCCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~  106 (240)
                      +..+|++|++.+++. |+.+|..+..                      .                         ++..++
T Consensus       417 ~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~  495 (587)
T 3qf4_A          417 GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV  495 (587)
T ss_dssp             HHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred             hheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence            235899999988864 6665543210                      0                         011258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|+|||||+      ...+.+.++++.  .|+|+|++|||++.+           ..||||++|++ +++..|+++
T Consensus       496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~~-----------~~~d~i~vl~~G~i~~~g~~~  562 (587)
T 3qf4_A          496 KKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPTA-----------LLADKILVLHEGKVAGFGTHK  562 (587)
T ss_dssp             TCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHHH-----------TTSSEEEEEETTEEEEEECHH
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHHH-----------HhCCEEEEEECCEEEEECCHH
Confidence            9999999999988      346888888774  489999999999987           48999999999 999999887


Q ss_pred             eee
Q 026304          180 FFT  182 (240)
Q Consensus       180 ~~~  182 (240)
                      ++.
T Consensus       563 el~  565 (587)
T 3qf4_A          563 ELL  565 (587)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.94  E-value=9.6e-28  Score=226.51  Aligned_cols=155  Identities=15%  Similarity=0.080  Sum_probs=121.2

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .++++|++++|       |+|+||++++||+++|+||||||||||+ ++|.|+        .++|+++...+... .| .
T Consensus       339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~r-~  415 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI-NLIPRFYDVTSGQILIDGHNIKDFLTGS-LR-N  415 (578)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-TTTTTSSCCSEEEEEETTEEGGGSCHHH-HH-H
T ss_pred             eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHH-HHHhcCCCCCCcEEEECCEEhhhCCHHH-Hh-h
Confidence            69999999998       8999999999999999999999999999 999997        34566554333222 12 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~~  107 (240)
                      ..+|++|++.+++. |+.+|..+..                      .+                         +..++.
T Consensus       416 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~  494 (578)
T 4a82_A          416 QIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  494 (578)
T ss_dssp             TEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             heEEEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence            35899999988875 6665543210                      00                         112589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+.+.++++.  .++|+|++|||++.+          . .||||++|++ ++...|++++
T Consensus       495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~----------~-~~d~i~~l~~G~i~~~g~~~e  561 (578)
T 4a82_A          495 NPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLSTI----------T-HADKIVVIENGHIVETGTHRE  561 (578)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGGT----------T-TCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECCHHH
Confidence            999999999988      346778887774  478999999999988          4 5999999999 9999998876


Q ss_pred             e
Q 026304          181 F  181 (240)
Q Consensus       181 ~  181 (240)
                      +
T Consensus       562 l  562 (578)
T 4a82_A          562 L  562 (578)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.94  E-value=3.8e-27  Score=222.60  Aligned_cols=156  Identities=15%  Similarity=0.077  Sum_probs=120.3

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .+++++|++++|       ++|+||++++||+++|+||||||||||+ ++|+|+        .++|+++...+... .| 
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~-  416 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIA-NLFTRFYDVDSGSICLDGHDVRDYKLTN-LR-  416 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECCEEhhhCCHHH-Hh-
Confidence            379999999998       7899999999999999999999999999 999997        24555554332221 12 


Q ss_pred             CCCeEEEccCceecceecCcchhHHH-----------------------hh-------------------------chhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ-----------------------KL-------------------------GDDA  105 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~l  105 (240)
                      ...+|++|++.+++. |+.+|..+..                       .+                         +..+
T Consensus       417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral  495 (582)
T 3b5x_A          417 RHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL  495 (582)
T ss_pred             cCeEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence            235899999887764 5554443211                       00                         1125


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|+|||||+      ...+.+.++++.  +|+|+|++|||++.+          . .||+|++|++ ++...|++
T Consensus       496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~----------~-~~d~i~~l~~G~i~~~g~~  562 (582)
T 3b5x_A          496 LRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHRLSTI----------E-QADEILVVDEGEIIERGRH  562 (582)
T ss_pred             HcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------H-hCCEEEEEECCEEEEECCH
Confidence            89999999999988      346888888875  389999999999987          4 7999999999 88888887


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +++
T Consensus       563 ~~l  565 (582)
T 3b5x_A          563 ADL  565 (582)
T ss_pred             HHH
Confidence            654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=1.6e-27  Score=225.92  Aligned_cols=156  Identities=19%  Similarity=0.161  Sum_probs=121.6

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      .|+++|++++|      |+|+||++++||+++|+||||||||||+ ++|.|+        .++|.++...+.... | ..
T Consensus       354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll-~~l~g~~~p~~G~i~~~g~~i~~~~~~~~-r-~~  430 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIV-NLLMRFYDVDRGQILVDGIDIRKIKRSSL-R-SS  430 (598)
T ss_dssp             CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHH-HHHTTSSCCSEEEEEETTEEGGGSCHHHH-H-HH
T ss_pred             eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCcCCCCeEEEECCEEhhhCCHHHH-H-hc
Confidence            59999999998      8999999999999999999999999999 999997        345665544332221 2 23


Q ss_pred             CeEEEccCceecceecCcchhHH----------------------Hh-------------------------hchhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFR----------------------QK-------------------------LGDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~~l~~~  108 (240)
                      .++++|++.+++. |+.+|..+.                      ..                         ++..++.+
T Consensus       431 i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~  509 (598)
T 3qf4_B          431 IGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN  509 (598)
T ss_dssp             EEEECTTCCCCSS-BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred             eEEEeCCCccccc-cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            5899999888764 555443221                      00                         01225899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|+|||||+      ...+.+.++++.  .|+|+|++||+++.+          . .||+|++|++ +++..|+++++
T Consensus       510 p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~~----------~-~~d~i~~l~~G~i~~~g~~~~l  576 (598)
T 3qf4_B          510 PKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNTI----------K-NADLIIVLRDGEIVEMGKHDEL  576 (598)
T ss_dssp             CSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTHH----------H-HCSEEEEECSSSEEECSCHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECCHHHH
Confidence            99999999988      346888888875  489999999999988          4 4999999999 99999988764


Q ss_pred             e
Q 026304          182 T  182 (240)
Q Consensus       182 ~  182 (240)
                      .
T Consensus       577 ~  577 (598)
T 3qf4_B          577 I  577 (598)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.93  E-value=3.8e-27  Score=222.60  Aligned_cols=156  Identities=13%  Similarity=0.063  Sum_probs=120.5

Q ss_pred             ceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            9 AAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         9 ~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .+|+++|++++|       |+|+||++++||+++|+||||||||||+ ++|+|+        .++|+++...+... .| 
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl-~~l~g~~~p~~G~i~~~g~~~~~~~~~~-~~-  416 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLAS-LR-  416 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHH-HH-
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHH-HHHhhccCCCCCeEEECCEEccccCHHH-HH-
Confidence            479999999988       7899999999999999999999999999 999997        24555543332211 12 


Q ss_pred             CCCeEEEccCceecceecCcchhHHH-----------------------hh-------------------------chhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ-----------------------KL-------------------------GDDA  105 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~l  105 (240)
                      ...+|++|++.+++. |+.+|..+..                       .+                         +..+
T Consensus       417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral  495 (582)
T 3b60_A          417 NQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL  495 (582)
T ss_dssp             HTEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred             hhCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence            235899999888764 6655443311                       00                         1125


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|+|||||+      ...+.+.++++.+  |+|+|++|||++.+          . .||+|++|++ ++...|++
T Consensus       496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~----------~-~~d~i~~l~~G~i~~~g~~  562 (582)
T 3b60_A          496 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI----------E-QADEIVVVEDGIIVERGTH  562 (582)
T ss_dssp             HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT----------T-TCSEEEEEETTEEEEEECH
T ss_pred             HhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccHHHH----------H-hCCEEEEEECCEEEEecCH
Confidence            89999999999988      3468888888853  89999999999987          4 7999999999 88888887


Q ss_pred             cee
Q 026304          179 AFF  181 (240)
Q Consensus       179 ~~~  181 (240)
                      +++
T Consensus       563 ~~l  565 (582)
T 3b60_A          563 SEL  565 (582)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.93  E-value=6.6e-27  Score=203.28  Aligned_cols=150  Identities=18%  Similarity=0.169  Sum_probs=98.7

Q ss_pred             ceEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCc
Q 026304            9 AAVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGA   84 (240)
Q Consensus         9 ~~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~   84 (240)
                      ++|+++|+++.+   ++++||+|++|++++|+||||||||||+ ++|+|+.. ....+...        +..+|++|++.
T Consensus        39 ~~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~I~~~--------g~i~~v~Q~~~  109 (290)
T 2bbs_A           39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLL-MMIMGELEPSEGKIKHS--------GRISFCSQNSW  109 (290)
T ss_dssp             -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHTTSSCEEEEEEECC--------SCEEEECSSCC
T ss_pred             ceEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHH-HHHhcCCCCCCcEEEEC--------CEEEEEeCCCc
Confidence            479999999977   9999999999999999999999999999 99999732 11112111        12477888766


Q ss_pred             eecceecCcchh-----------H---------HH-------------------------hhchhhhccCcEEEEcCccC
Q 026304           85 KLPCWALPELTS-----------F---------RQ-------------------------KLGDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        85 ~~~~~~~~~~~~-----------~---------~~-------------------------~~~~~l~~~p~lllLDEP~~  119 (240)
                      +++. ++.+++.           .         ..                         .++..++.+|++||||||++
T Consensus       110 l~~~-tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts  188 (290)
T 2bbs_A          110 IMPG-TIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG  188 (290)
T ss_dssp             CCSS-BHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred             cCcc-cHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence            6553 4443321           0         00                         00122689999999999988


Q ss_pred             ------hHHHHHHH-HHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          120 ------FEDLYEFC-CNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       120 ------~~~i~~~l-~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                            +..+++.+ +++ . .|+|||++|||++.+          . .||++++|++ ++...|+++.+
T Consensus       189 ~LD~~~~~~i~~~ll~~~-~-~~~tviivtHd~~~~----------~-~~d~i~~l~~G~i~~~g~~~~l  245 (290)
T 2bbs_A          189 YLDVLTEKEIFESCVCKL-M-ANKTRILVTSKMEHL----------K-KADKILILHEGSSYFYGTFSEL  245 (290)
T ss_dssp             TCCHHHHHHHHHHCCCCC-T-TTSEEEEECCCHHHH----------H-HSSEEEEEETTEEEEEECHHHH
T ss_pred             cCCHHHHHHHHHHHHHHh-h-CCCEEEEEecCHHHH----------H-cCCEEEEEECCeEEEeCCHHHH
Confidence                  23455542 333 2 489999999999887          5 5999999999 88877877654

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=99.93  E-value=3.1e-25  Score=185.80  Aligned_cols=182  Identities=34%  Similarity=0.565  Sum_probs=137.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhh-hc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA-YA  107 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l-~~  107 (240)
                      .+|.++.+.||+|+||||++++.+..+...|..+..+.+..+.+ +...+..+.+..++...+.....+...+.... -.
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~   88 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFND   88 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCT
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCC
Confidence            46999999999999999988787777777787777765544444 32223333332233333332223333221111 13


Q ss_pred             cCcEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCcceeeeeec
Q 026304          108 KLDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFFTLRKT  186 (240)
Q Consensus       108 ~p~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~~~~~~  186 (240)
                      ++++|++||.+++ .++++.+..+++ .|++||+++|+.++.+++|+.+..|..+||+|..|+..|..||.++.++.|..
T Consensus        89 ~~dvViIDEaQ~l~~~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~~ic~~Cg~~a~~~~r~~  167 (223)
T 2b8t_A           89 ETKVIGIDEVQFFDDRICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKI  167 (223)
T ss_dssp             TCCEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECCEECTTTCSEECEEEEEE
T ss_pred             CCCEEEEecCccCcHHHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecceeccccCCccceeEEec
Confidence            5899999999885 467888888887 69999999999999999999999999999999999999999999999999987


Q ss_pred             CCCc------EEEeCCcceEEeecchhhccCc
Q 026304          187 EETE------TEIIGGADVYMPVCRQHYVNGQ  212 (240)
Q Consensus       187 ~~~~------~~~~g~~~~y~~~c~~~~~~~~  212 (240)
                      .+..      ++.+|+.+.|.++||+||....
T Consensus       168 ~g~~~~~~~~~v~iGg~~~Y~~~Cr~c~~~~~  199 (223)
T 2b8t_A          168 DGKHADYNDDIVKIGCQEFYSAVCRHHHKVPN  199 (223)
T ss_dssp             TTEECCTTSCSCCCCSTTTEEEECGGGCCCTT
T ss_pred             CCCccccCCCeEEECCcceEEeeChhhhcCcc
Confidence            6543      6778999999999999997543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.92  E-value=1.6e-25  Score=209.69  Aligned_cols=154  Identities=16%  Similarity=0.057  Sum_probs=117.3

Q ss_pred             CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304            8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .++++++|+++.|    ++++||+|++||+++|+||||||||||+ ++|+|+.  ..|. +..       . ...+|++|
T Consensus       285 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~-i~~-------~-~~i~~v~Q  354 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGK-IEW-------D-LTVAYKPQ  354 (538)
T ss_dssp             CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBCC-CCC-------C-CCEEEECS
T ss_pred             CeEEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeE-EEE-------C-ceEEEEec
Confidence            3589999999998    7889999999999999999999999999 9999973  2333 211       1 12478888


Q ss_pred             cCceecceecCcchhHH--H---------h---------------------------hchhhhccCcEEEEcCccC----
Q 026304           82 DGAKLPCWALPELTSFR--Q---------K---------------------------LGDDAYAKLDVIGIDEAQF----  119 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~---------~---------------------------~~~~l~~~p~lllLDEP~~----  119 (240)
                      +.......++.++....  .         .                           ++..++.+|++|||||||+    
T Consensus       355 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~  434 (538)
T 1yqt_A          355 YIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV  434 (538)
T ss_dssp             SCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred             CCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence            86655555554433221  0         0                           0112589999999999998    


Q ss_pred             --hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCccee
Q 026304          120 --FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFF  181 (240)
Q Consensus       120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~  181 (240)
                        +..++++|++++++.|.|||++|||++++          ..+||||++|++   .+...|+|+.+
T Consensus       435 ~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~----------~~~~drv~vl~~~~~~~~~~g~~~~~  491 (538)
T 1yqt_A          435 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMI----------DYVSDRLMVFEGEPGKYGRALPPMGM  491 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEECSCHHHH----------HHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEeCCcceEeecCCHHHH
Confidence              45789999998754689999999999999          999999999986   34456777653

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.92  E-value=2.1e-25  Score=211.25  Aligned_cols=154  Identities=17%  Similarity=0.067  Sum_probs=117.9

Q ss_pred             CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeEEEc
Q 026304            8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .++++++|+++.|    ++++||++.+||+++|+||||||||||+ ++|+|+..  .|. +..       . ...+|++|
T Consensus       355 ~~~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLl-k~l~Gl~~p~~G~-I~~-------~-~~i~~v~Q  424 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFV-KMLAGVEEPTEGK-VEW-------D-LTVAYKPQ  424 (607)
T ss_dssp             CEEEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHH-HHHHTSSCCSBSC-CCC-------C-CCEEEECS
T ss_pred             ceEEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHH-HHHhcCCCCCceE-EEE-------e-eEEEEEec
Confidence            3589999999998    7888899999999999999999999999 99999732  332 211       1 12478999


Q ss_pred             cCceecceecCcchhHH--Hh-------------h-----------------------chhhhccCcEEEEcCccC----
Q 026304           82 DGAKLPCWALPELTSFR--QK-------------L-----------------------GDDAYAKLDVIGIDEAQF----  119 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~-------------~-----------------------~~~l~~~p~lllLDEP~~----  119 (240)
                      +......+++.++....  ..             +                       +..++.+|++|||||||+    
T Consensus       425 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~  504 (607)
T 3bk7_A          425 YIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV  504 (607)
T ss_dssp             SCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred             CccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH
Confidence            87655556665443321  00             0                       112589999999999988    


Q ss_pred             --hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCccee
Q 026304          120 --FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFF  181 (240)
Q Consensus       120 --~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~  181 (240)
                        +..++++|++++++.|.|||++|||++++          ..+|||+++|++   .+...|+|+.+
T Consensus       505 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~----------~~~adrv~vl~~~~g~~~~~g~p~~~  561 (607)
T 3bk7_A          505 EQRLAVSRAIRHLMEKNEKTALVVEHDVLMI----------DYVSDRLIVFEGEPGRHGRALPPMGM  561 (607)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEECSCHHHH----------HHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEcCCcceEEecCCHHHH
Confidence              45789999998755799999999999999          999999999985   33456777653

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=99.92  E-value=4e-25  Score=179.99  Aligned_cols=176  Identities=34%  Similarity=0.531  Sum_probs=133.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL  109 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p  109 (240)
                      +|.++.+.||+||||||++++.+..+...|+++..+.+..+.|++...+..+.+.......+.+...+...+    ..++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~----~~~~   77 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYI----EEDT   77 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGC----CTTE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHh----cCCC
Confidence            488999999999999999867776666677777666555555544333333333222222222222222111    1368


Q ss_pred             cEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccC-CcceeeeeecC
Q 026304          110 DVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCG-KRAFFTLRKTE  187 (240)
Q Consensus       110 ~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g-~~~~~~~~~~~  187 (240)
                      ++|++||.++. .++.+.++.+++ .+..|++++++.++.+++|+....|..+||.+..|+..|..|| .++.++.|+..
T Consensus        78 dvviIDE~Q~~~~~~~~~l~~l~~-~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ic~~cg~~~a~~~~r~~~  156 (184)
T 2orw_A           78 RGVFIDEVQFFNPSLFEVVKDLLD-RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG  156 (184)
T ss_dssp             EEEEECCGGGSCTTHHHHHHHHHH-TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBCCTTTCCSCBCEEEECSS
T ss_pred             CEEEEECcccCCHHHHHHHHHHHH-CCCCEEEEeeccccccCCccchHHHHHHhhheEEeeeecCCCCCeeceeEEEEcC
Confidence            89999999986 468888888887 5999999999999999999999999999999999999888899 99999999999


Q ss_pred             CCcEEEeCCcceEEeecchhhcc
Q 026304          188 ETETEIIGGADVYMPVCRQHYVN  210 (240)
Q Consensus       188 ~~~~~~~g~~~~y~~~c~~~~~~  210 (240)
                      +++++.+|+.+.|.++||+||..
T Consensus       157 ~~~~~~ig~~~~Y~~~cr~~~~~  179 (184)
T 2orw_A          157 GEEEIDVGGQEKYIAVCRDCYNT  179 (184)
T ss_dssp             CSCSCCCCSTTTEEEECHHHHHH
T ss_pred             CCCEEEECCCCcEEEccHHHHhh
Confidence            99999999999999999999964

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.91  E-value=1.9e-24  Score=202.20  Aligned_cols=144  Identities=15%  Similarity=0.044  Sum_probs=104.7

Q ss_pred             CceEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEc
Q 026304            8 PAAVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTH   81 (240)
Q Consensus         8 ~~~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q   81 (240)
                      .++++++++++.|    +..+||++++||+++|+||||||||||+ ++|+|+.  ..|. +...      . ...++++|
T Consensus       267 ~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl-~~l~Gl~~p~~G~-i~~~------~-~~i~~~~q  337 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFA-RILVGEITADEGS-VTPE------K-QILSYKPQ  337 (538)
T ss_dssp             CEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHH-HHHTTSSCCSBCC-EESS------C-CCEEEECS
T ss_pred             cceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCcE-EEEC------C-eeeEeech
Confidence            3579999999998    7788999999999999999999999999 9999972  2232 1110      0 01244444


Q ss_pred             cCceecceecCcchhH---------------------------------------HHhhchhhhccCcEEEEcCccC---
Q 026304           82 DGAKLPCWALPELTSF---------------------------------------RQKLGDDAYAKLDVIGIDEAQF---  119 (240)
Q Consensus        82 ~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~l~~~p~lllLDEP~~---  119 (240)
                      ........++.++...                                       ...++..++.+|++|||||||+   
T Consensus       338 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD  417 (538)
T 3ozx_A          338 RIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLD  417 (538)
T ss_dssp             SCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCC
T ss_pred             hcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence            3222112222221111                                       0011233689999999999988   


Q ss_pred             ---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          120 ---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       120 ---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                         +.+++++|++++++.|.|||++|||++++          ..+||||++|++
T Consensus       418 ~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~----------~~~aDri~vl~~  461 (538)
T 3ozx_A          418 VEERYIVAKAIKRVTRERKAVTFIIDHDLSIH----------DYIADRIIVFKG  461 (538)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH----------HHHCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence               45789999999865799999999999999          999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.91  E-value=4.1e-25  Score=224.47  Aligned_cols=155  Identities=17%  Similarity=0.150  Sum_probs=121.3

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++|++++|        |+|+||++++||+++|+||||||||||+ ++|.|+        .++|.++...+.... |.
T Consensus       387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~-~ll~g~~~~~~G~i~i~g~~i~~~~~~~~-r~  464 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLDGMVSIDGQDIRTINVRYL-RE  464 (1284)
T ss_dssp             CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH-HHTTTSSCCSEEEEEETTEEGGGSCHHHH-HH
T ss_pred             eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCeEEEECCEEHHhCCHHHH-Hh
Confidence            59999999998        8899999999999999999999999999 999997        346666554433222 22


Q ss_pred             CCCeEEEccCceecceecCcchhHHHh----------------------h-------------------------chhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQK----------------------L-------------------------GDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~l~  106 (240)
                       ..++++|++.+++. |+.+|..+...                      +                         +..++
T Consensus       465 -~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          465 -IIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             -HEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             -heEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence             25899999988876 67666544210                      0                         11258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|+|||||+      ...+.+.++++.  .|+|+|++||+++.+          .. ||+|++|++ +++..|+++
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~i----------~~-~d~i~vl~~G~i~~~g~~~  609 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLSTV----------RN-ADVIAGFDGGVIVEQGNHD  609 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHHH----------TT-CSEEEECSSSCCCCEECHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHHH----------Hc-CCEEEEEECCEEEEECCHH
Confidence            8999999999998      235666666654  489999999999998          54 999999999 999899876


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      ++
T Consensus       610 ~l  611 (1284)
T 3g5u_A          610 EL  611 (1284)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.90  E-value=2.4e-25  Score=226.68  Aligned_cols=157  Identities=17%  Similarity=0.191  Sum_probs=123.0

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++||+++|        |+|+||+|++||.+||+||||||||||+ ++|.|+        .++|.++..++.... | 
T Consensus      1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~-~lL~rl~~p~~G~I~iDG~di~~i~~~~l-R- 1152 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV-ALLERFYDTLGGEIFIDGSEIKTLNPEHT-R- 1152 (1321)
T ss_dssp             CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH-HHHTTSSCCSSSEEEETTEETTTBCHHHH-H-
T ss_pred             eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHH-HHHhcCccCCCCEEEECCEEhhhCCHHHH-H-
Confidence            69999999999        8999999999999999999999999999 999997        457777766544322 2 


Q ss_pred             CCCeEEEccCceecceecCcchhH------------HH------------hh-------------------------chh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSF------------RQ------------KL-------------------------GDD  104 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~------------~~------------~~-------------------------~~~  104 (240)
                      +..++|+|++.+|+. |+.+|..+            ..            .+                         ++.
T Consensus      1153 ~~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARA 1231 (1321)
T 4f4c_A         1153 SQIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARA 1231 (1321)
T ss_dssp             TTEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHH
T ss_pred             hheEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHH
Confidence            235899999998875 45444211            00            00                         122


Q ss_pred             hhccCcEEEEcCccC-h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF-F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~-~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++++|++|+|||||+ .     ..+.+.|+++.  .++|+|+++|.++.+           ..||||++|++ +++.+|+
T Consensus      1232 llr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsTi-----------~~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A         1232 LVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNTV-----------MNADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp             HHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSSTT-----------TTCSEEEEESSSSEEEEEC
T ss_pred             HHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHHH-----------HhCCEEEEEECCEEEEECC
Confidence            689999999999998 2     24556665553  489999999999987           67999999999 9999999


Q ss_pred             cceeee
Q 026304          178 RAFFTL  183 (240)
Q Consensus       178 ~~~~~~  183 (240)
                      ++++..
T Consensus      1299 h~eLl~ 1304 (1321)
T 4f4c_A         1299 HTQLMS 1304 (1321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            987654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.90  E-value=5.7e-25  Score=223.44  Aligned_cols=156  Identities=17%  Similarity=0.171  Sum_probs=120.1

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .++++|++++|        |+|+||+|++||+++|+||||||||||+ ++|.|+        .++|.++...+... .| 
T Consensus      1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~-~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r- 1106 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYDPMAGSVFLDGKEIKQLNVQW-LR- 1106 (1284)
T ss_dssp             CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHH-HHHTTSSCCSEEEEESSSSCTTSSCHHH-HT-
T ss_pred             cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHH-HHHhcCcCCCCCEEEECCEEcccCCHHH-HH-
Confidence            59999999998        8899999999999999999999999999 999997        35676665443322 22 


Q ss_pred             CCCeEEEccCceecceecCcchhHH---------------H---------hh-------------------------chh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR---------------Q---------KL-------------------------GDD  104 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~---------------~---------~~-------------------------~~~  104 (240)
                      ...+|++|++.+++. |+.+|..+.               .         .+                         +..
T Consensus      1107 ~~i~~v~Q~~~l~~~-ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARa 1185 (1284)
T 3g5u_A         1107 AQLGIVSQEPILFDC-SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARA 1185 (1284)
T ss_dssp             TSCEEEESSCCCCSS-BHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHH
T ss_pred             hceEEECCCCccccc-cHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHH
Confidence            336999999877653 444333110               0         00                         112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|+|||||+      ...+.+.|++. . .|+|||++|||++.+          . .||||++|++ +++..|+
T Consensus      1186 l~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~-~~~tvi~isH~l~~i----------~-~~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A         1186 LVRQPHILLLDEATSALDTESEKVVQEALDKA-R-EGRTCIVIAHRLSTI----------Q-NADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp             HHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-S-SSSCEEEECSCTTGG----------G-SCSEEEEEETBEEEEEEC
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-C-CCCEEEEEecCHHHH----------H-cCCEEEEEECCEEEEECC
Confidence            589999999999998      34677777765 3 589999999999988          4 4999999999 9998998


Q ss_pred             cceee
Q 026304          178 RAFFT  182 (240)
Q Consensus       178 ~~~~~  182 (240)
                      ++++.
T Consensus      1253 ~~~l~ 1257 (1284)
T 3g5u_A         1253 HQQLL 1257 (1284)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.90  E-value=9e-25  Score=222.51  Aligned_cols=155  Identities=19%  Similarity=0.166  Sum_probs=123.7

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++|++|+|        |+|+||+|++|+.++|+||+|||||||+ ++|.|+        .++|.++..++.... | 
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll-~ll~~~~~~~~G~I~idG~~i~~~~~~~l-r-  491 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTII-SLLLRYYDVLKGKITIDGVDVRDINLEFL-R-  491 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHH-H-
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHH-HHhccccccccCcccCCCccchhccHHHH-h-
Confidence            59999999999        8999999999999999999999999999 999997        356766655543322 2 


Q ss_pred             CCCeEEEccCceecceecCcchhHHH----------------------hh-------------------------chhhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQ----------------------KL-------------------------GDDAY  106 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~~-------------------------~~~l~  106 (240)
                      ...+||+|++.+|+. |+.+|..+..                      .+                         ++.++
T Consensus       492 ~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~  570 (1321)
T 4f4c_A          492 KNVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV  570 (1321)
T ss_dssp             HHEEEECSSCCCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred             hcccccCCcceeeCC-chhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence            235899999998875 5655543310                      00                         12258


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|||||||+      ...+.+.|.++.+  |+|+|++||++..+           +.||+|++|++ +++..|+.+
T Consensus       571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls~i-----------~~aD~Iivl~~G~ive~Gth~  637 (1321)
T 4f4c_A          571 RNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLSTI-----------RNADLIISCKNGQVVEVGDHR  637 (1321)
T ss_dssp             TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTTTT-----------TTCSEEEEEETTEEEEEECHH
T ss_pred             cCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHHHH-----------HhCCEEEEeeCCeeeccCCHH
Confidence            9999999999988      2357778877764  89999999999987           78999999999 999999877


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      ++
T Consensus       638 eL  639 (1321)
T 4f4c_A          638 AL  639 (1321)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.89  E-value=1.2e-23  Score=199.22  Aligned_cols=148  Identities=18%  Similarity=0.097  Sum_probs=102.5

Q ss_pred             eEEE--------cceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCce------------
Q 026304           10 AVTT--------NQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRN------------   61 (240)
Q Consensus        10 ~l~~--------~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~------------   61 (240)
                      +|++        +|++++|      ++++| ++++||+++|+||||||||||+ ++|+|+.  ..|..            
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLl-kiL~Gll~p~~G~~~~~~~~~~~~~~  160 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAV-KILAGQLIPNLCEDNDSWDNVIRAFR  160 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHTTSSCCCTTTTCCCHHHHHHHTT
T ss_pred             eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHH-HHHhCCCCCCCCccccccchhhheeC
Confidence            5788        8999988      78999 9999999999999999999999 9999973  23431            


Q ss_pred             ---EEeeccchhcccCCCeEEEccCceecc---eecCcch----------hHHHh-----------------------hc
Q 026304           62 ---IAMIKSSKDTRYAIDSVVTHDGAKLPC---WALPELT----------SFRQK-----------------------LG  102 (240)
Q Consensus        62 ---i~~~~~~~~~~~~~~~~v~q~~~~~~~---~~~~~~~----------~~~~~-----------------------~~  102 (240)
                         +..............++++|.....+.   .++.++.          .+...                       ++
T Consensus       161 G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIA  240 (607)
T 3bk7_A          161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIA  240 (607)
T ss_dssp             TSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHH
T ss_pred             CEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHH
Confidence               100000000011123566664322111   1221111          11111                       12


Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ..++.+|++|||||||+      +..++++|+++.+ .|.|||++|||++++          ..+||||++|++
T Consensus       241 raL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~~~----------~~~adri~vl~~  303 (607)
T 3bk7_A          241 AALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLAVL----------DYLSDVIHVVYG  303 (607)
T ss_dssp             HHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEES
T ss_pred             HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChHHH----------HhhCCEEEEECC
Confidence            33689999999999988      4578999999987 699999999999999          899999999976

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.3e-23  Score=198.82  Aligned_cols=148  Identities=19%  Similarity=0.051  Sum_probs=106.1

Q ss_pred             cceeEee------ecCCCCcccCc-----EEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEE
Q 026304           14 NQVNSGR------DRVGLPHRNSG-----EIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus        14 ~~ls~~~------l~~vsl~i~~G-----e~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      ++++++|      ++++||++.+|     |+++|+||||||||||+ ++|+|+.  ..|..+.        +. ..++++
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLl-k~l~Gl~~p~~G~~~~--------~~-~i~~~~  419 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLI-KLLAGALKPDEGQDIP--------KL-NVSMKP  419 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHH-HHHHTSSCCSBCCCCC--------SC-CEEEEC
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHH-HHHhcCCCCCCCcCcc--------CC-cEEEec
Confidence            4566665      78999999999     77999999999999999 9999973  3454210        11 135666


Q ss_pred             ccCceecceecCcchhH---------------HH-----------------------hhchhhhccCcEEEEcCccC---
Q 026304           81 HDGAKLPCWALPELTSF---------------RQ-----------------------KLGDDAYAKLDVIGIDEAQF---  119 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~---------------~~-----------------------~~~~~l~~~p~lllLDEP~~---  119 (240)
                      |........++.++...               ..                       .++..++.+|++|||||||+   
T Consensus       420 q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD  499 (608)
T 3j16_B          420 QKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLD  499 (608)
T ss_dssp             SSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCC
T ss_pred             ccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCC
Confidence            65332222222221100               00                       01233689999999999988   


Q ss_pred             ---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc---eeeccCCccee
Q 026304          120 ---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA---RCELCGKRAFF  181 (240)
Q Consensus       120 ---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~---~~~~~g~~~~~  181 (240)
                         +.+++++|+++.++.|.|||++|||++++          ..+||||++|++   ++...|+|+.+
T Consensus       500 ~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~----------~~~aDrvivl~~~~g~~~~~g~p~~~  557 (608)
T 3j16_B          500 SEQRIICSKVIRRFILHNKKTAFIVEHDFIMA----------TYLADKVIVFEGIPSKNAHARAPESL  557 (608)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH----------HHHCSEEEECEEETTTEEECCCCEEH
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH----------HHhCCEEEEEeCCCCeEEecCChHHH
Confidence               45788999998754699999999999999          999999999985   56778888653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.89  E-value=2.7e-23  Score=194.54  Aligned_cols=147  Identities=15%  Similarity=0.046  Sum_probs=99.5

Q ss_pred             EEE-cceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCce---------------EEeec
Q 026304           11 VTT-NQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRN---------------IAMIK   66 (240)
Q Consensus        11 l~~-~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~---------------i~~~~   66 (240)
                      .++ +||+++|      ++++| +|++||+++|+||||||||||+ |+|+|+.  ..|..               +....
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLl-k~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~   98 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAV-KILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF   98 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHH-HHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHH-HHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence            455 6899998      78999 9999999999999999999999 9999973  23431               10000


Q ss_pred             cchhcccCCCeEEEccCceecce---ecCcch----------hHHHh-----------------------hchhhhccCc
Q 026304           67 SSKDTRYAIDSVVTHDGAKLPCW---ALPELT----------SFRQK-----------------------LGDDAYAKLD  110 (240)
Q Consensus        67 ~~~~~~~~~~~~v~q~~~~~~~~---~~~~~~----------~~~~~-----------------------~~~~l~~~p~  110 (240)
                      ..........++++|.....+..   ++.++.          .....                       ++..++.+|+
T Consensus        99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~  178 (538)
T 1yqt_A           99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNAT  178 (538)
T ss_dssp             HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            00000111235666643222211   221111          01111                       1223689999


Q ss_pred             EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          111 VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       111 lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +|||||||+      +..++++|+++++ .|.|||++|||++++          ..+||||++|++
T Consensus       179 lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~~~----------~~~~dri~vl~~  233 (538)
T 1yqt_A          179 FYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVL----------DYLSDIIHVVYG  233 (538)
T ss_dssp             EEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHH----------HHHCSEEEEEEE
T ss_pred             EEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhCCEEEEEcC
Confidence            999999988      4578999999987 699999999999999          999999999976

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.87  E-value=8.8e-23  Score=200.68  Aligned_cols=147  Identities=15%  Similarity=0.117  Sum_probs=102.5

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccC-
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG-   83 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~-   83 (240)
                      .|...|++++|     |+++||++++|++++|+||||||||||+ |+|+|-.+.|.+.     ..  ..+ .+|++|+. 
T Consensus       435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLL-k~LagG~i~g~~~-----~~--~~~-~~~v~q~~~  505 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLM-RAIANGQVDGFPT-----QE--ECR-TVYVEHDID  505 (986)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHHTCSTTCCC-----TT--TSC-EEETTCCCC
T ss_pred             eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcc-----cc--cee-EEEEccccc
Confidence            46667999998     8999999999999999999999999999 9998533333221     00  011 23444432 


Q ss_pred             ceecceecCcchhH------------HHh------------------------hchhhhccCcEEEEcCccC------hH
Q 026304           84 AKLPCWALPELTSF------------RQK------------------------LGDDAYAKLDVIGIDEAQF------FE  121 (240)
Q Consensus        84 ~~~~~~~~~~~~~~------------~~~------------------------~~~~l~~~p~lllLDEP~~------~~  121 (240)
                      .+++.+++.++..+            ...                        +...++.+|++|||||||+      +.
T Consensus       506 ~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~  585 (986)
T 2iw3_A          506 GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA  585 (986)
T ss_dssp             CCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHH
T ss_pred             ccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHH
Confidence            23333333322110            000                        1223689999999999988      34


Q ss_pred             HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee-ccCCcc
Q 026304          122 DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE-LCGKRA  179 (240)
Q Consensus       122 ~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~-~~g~~~  179 (240)
                      .+.++|++    .|.|||++|||++++          ..+||++++|++ ++. +.|+++
T Consensus       586 ~l~~~L~~----~g~tvIivSHdl~~l----------~~~adrii~L~~G~iv~~~G~~~  631 (986)
T 2iw3_A          586 WLVNYLNT----CGITSITISHDSVFL----------DNVCEYIINYEGLKLRKYKGNFT  631 (986)
T ss_dssp             HHHHHHHH----SCSEEEEECSCHHHH----------HHHCSEEEEEETTEEEEEESCHH
T ss_pred             HHHHHHHh----CCCEEEEEECCHHHH----------HHhCCEEEEEECCeeecCCCCHH
Confidence            56666655    489999999999999          899999999998 775 456543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.85  E-value=6.9e-22  Score=194.36  Aligned_cols=47  Identities=19%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             CceEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304            8 PAAVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus         8 ~~~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+||+++|++++|       ++++||++++|++++|+||||||||||+ ++|+|+
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLL-klLaGl  722 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI-NVLTGE  722 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHH-HHHTTS
T ss_pred             CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence            3589999999988       7899999999999999999999999999 999997

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.85  E-value=6.7e-22  Score=189.50  Aligned_cols=64  Identities=20%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             hhccCc--EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304          105 AYAKLD--VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA  170 (240)
Q Consensus       105 l~~~p~--lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~  170 (240)
                      ++.+|+  +|||||||+      ...++++|+++++ .|.|||+||||++++           ..||++++|      ++
T Consensus       217 L~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~~-----------~~~d~ii~l~~g~~~~~  284 (670)
T 3ux8_A          217 IGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTM-----------LAADYLIDIGPGAGIHG  284 (670)
T ss_dssp             HHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------HHCSEEEEECSSSGGGC
T ss_pred             HhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHH-----------hhCCEEEEecccccccC
Confidence            678888  999999988      4589999999986 699999999999977           469999999      66


Q ss_pred             -eeeccCCcce
Q 026304          171 -RCELCGKRAF  180 (240)
Q Consensus       171 -~~~~~g~~~~  180 (240)
                       ++++.|+++.
T Consensus       285 G~i~~~g~~~~  295 (670)
T 3ux8_A          285 GEVVAAGTPEE  295 (670)
T ss_dssp             CSEEEEECHHH
T ss_pred             CEEEEecCHHH
Confidence             7887777654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.4e-21  Score=183.42  Aligned_cols=56  Identities=20%  Similarity=0.068  Sum_probs=50.0

Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .++.+|++|||||||+      ...+.++|+++++ .|.|||++|||++++          ..+||||++|+.
T Consensus       235 aL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~~~----------~~~~drv~vl~~  296 (608)
T 3j16_B          235 SCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLSVL----------DYLSDFVCIIYG  296 (608)
T ss_dssp             HHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHHHH----------HHHCSEEEEEES
T ss_pred             HHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEeC
Confidence            3689999999999988      3468889999876 699999999999999          999999999975

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.84  E-value=1.2e-21  Score=187.66  Aligned_cols=65  Identities=20%  Similarity=0.217  Sum_probs=55.5

Q ss_pred             hhccC---cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304          105 AYAKL---DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T  169 (240)
Q Consensus       105 l~~~p---~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~  169 (240)
                      ++.+|   ++|||||||+      ..+++++|+++++ .|.|||+||||++.+           ..||||++|      +
T Consensus       558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~~-----------~~~d~i~~l~~~~g~~  625 (670)
T 3ux8_A          558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVI-----------KTADYIIDLGPEGGDR  625 (670)
T ss_dssp             HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEEESSSGGG
T ss_pred             HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH-----------HhCCEEEEecCCcCCC
Confidence            56665   6999999988      4579999999987 699999999999977           569999999      6


Q ss_pred             c-eeeccCCccee
Q 026304          170 A-RCELCGKRAFF  181 (240)
Q Consensus       170 ~-~~~~~g~~~~~  181 (240)
                      + +++++|+++++
T Consensus       626 ~G~i~~~g~~~~~  638 (670)
T 3ux8_A          626 GGQIVAVGTPEEV  638 (670)
T ss_dssp             CCEEEEEECHHHH
T ss_pred             CCEEEEecCHHHH
Confidence            7 89999988765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.83  E-value=1e-20  Score=177.01  Aligned_cols=55  Identities=18%  Similarity=0.071  Sum_probs=48.8

Q ss_pred             hhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          104 DAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .++.+|++|||||||+      +..+.++|+++.+  |+|||++|||++++          ..+||+|++|++
T Consensus       152 aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl~~~----------~~~~d~i~vl~~  212 (538)
T 3ozx_A          152 SLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDLIVL----------DYLTDLIHIIYG  212 (538)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCHHHH----------HHHCSEEEEEEE
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeChHHH----------HhhCCEEEEecC
Confidence            3689999999999998      3468888988853  89999999999999          999999999986

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.81  E-value=1.6e-21  Score=160.86  Aligned_cols=134  Identities=13%  Similarity=0.001  Sum_probs=82.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CCceEEeeccchhcccCCCeEEEccCceecceecCcch-
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELT-   95 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~-   95 (240)
                      ++|  .++++|++++|+||||||||||+ ++|+|+..    .+ .+...++....+ ...+|++|+...++.+++.+++ 
T Consensus        12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl-~~l~gl~~~i~~~~-~~~~~~~~~~~~-~~i~~~~q~~~~~~~~~~~~~l~   86 (207)
T 1znw_A           12 ARG--QPAAVGRVVVLSGPSAVGKSTVV-RCLRERIPNLHFSV-SATTRAPRPGEV-DGVDYHFIDPTRFQQLIDQGELL   86 (207)
T ss_dssp             ---------CCCEEEEECSTTSSHHHHH-HHHHHHSTTCEECC-CEESSCCCTTCC-BTTTBEECCHHHHHHHHHTTCEE
T ss_pred             CCC--CCCCCCCEEEEECCCCCCHHHHH-HHHHhhCCceEEcc-cccccCCccccc-CCCeeEecCHHHHHHHHhcCCce
Confidence            666  79999999999999999999999 99999741    11 111111111112 2247888764433322211100 


Q ss_pred             ---------------------------------h---H---HHhhch---hhhccCcEEEEcCccC----------hHHH
Q 026304           96 ---------------------------------S---F---RQKLGD---DAYAKLDVIGIDEAQF----------FEDL  123 (240)
Q Consensus        96 ---------------------------------~---~---~~~~~~---~l~~~p~lllLDEP~~----------~~~i  123 (240)
                                                       .   +   ......   .++.+|++++||||+.          +.++
T Consensus        87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l  166 (207)
T 1znw_A           87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRL  166 (207)
T ss_dssp             EEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred             eehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHH
Confidence                                             0   0   000011   2467899999999954          3468


Q ss_pred             HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          124 YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       124 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      .++++++.++.|.|++++|||++++          ..+||||++|.
T Consensus       167 ~~~l~~l~~~~g~tvi~vtHdl~~~----------~~~~d~i~~l~  202 (207)
T 1znw_A          167 DTARIELAAQGDFDKVVVNRRLESA----------CAELVSLLVGT  202 (207)
T ss_dssp             HHHHHHHHGGGGSSEEEECSSHHHH----------HHHHHHHHC--
T ss_pred             HHHHHHHhhhccCcEEEECCCHHHH----------HHHHHHHHHhc
Confidence            8888888765689999999999999          99999999885

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1.3e-21  Score=179.83  Aligned_cols=156  Identities=10%  Similarity=-0.063  Sum_probs=104.8

Q ss_pred             CceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCC-ceEEeeccchhcccCCCeEEEccCc
Q 026304            8 PAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNG-RNIAMIKSSKDTRYAIDSVVTHDGA   84 (240)
Q Consensus         8 ~~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g-~~i~~~~~~~~~~~~~~~~v~q~~~   84 (240)
                      .+|++++|+++.| .++||++++|++++|+||||||||||+ |+|+|+.  ..| ..+.....   .+. ..++++|...
T Consensus       116 ~~mi~~~nl~~~y-~~vsl~i~~Ge~v~IvGpnGsGKSTLl-r~L~Gl~~p~~G~~pI~vdg~---~~~-~i~~vpq~~~  189 (460)
T 2npi_A          116 HTMKYIYNLHFML-EKIRMSNFEGPRVVIVGGSQTGKTSLS-RTLCSYALKFNAYQPLYINLD---PQQ-PIFTVPGCIS  189 (460)
T ss_dssp             CTHHHHHHHHHHH-HHHHHHSSSCCCEEEEESTTSSHHHHH-HHHHHTTHHHHCCCCEEEECC---TTS-CSSSCSSCCE
T ss_pred             cchhhhhhhhehh-hcCceEeCCCCEEEEECCCCCCHHHHH-HHHhCcccccCCceeEEEcCC---ccC-Ceeeeccchh
Confidence            4688999999886 589999999999999999999999999 9999983  355 42332211   111 1245555432


Q ss_pred             eec---ceecCcch-------------------------------hHH------Hhhchh--hhccCcE----EEEcC-c
Q 026304           85 KLP---CWALPELT-------------------------------SFR------QKLGDD--AYAKLDV----IGIDE-A  117 (240)
Q Consensus        85 ~~~---~~~~~~~~-------------------------------~~~------~~~~~~--l~~~p~l----llLDE-P  117 (240)
                      +++   .+++.++.                               .+.      ..++..  ++.+|++    ||||| |
T Consensus       190 l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP  269 (460)
T 2npi_A          190 ATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS  269 (460)
T ss_dssp             EEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred             hcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence            211   11111110                               000      011334  7899999    99999 8


Q ss_pred             cC-hHHHHHHHHHHHhcCCCEEEEEecChh------hhhcccchHHHHHhhccc-----eeeec-c-eeeccCCcce
Q 026304          118 QF-FEDLYEFCCNAADHDGKTVVVAGLDGD------YLRRSFGSVLDIIPLADT-----VTKLT-A-RCELCGKRAF  180 (240)
Q Consensus       118 ~~-~~~i~~~l~~l~~~~g~tvi~vtHd~~------~~~~~f~~~~~L~~~ad~-----i~~l~-~-~~~~~g~~~~  180 (240)
                      ++ .+.-.+.|.++.++.+.|+++++||.+      ++          ..+||+     |++|+ + +++ .|+++.
T Consensus       270 ts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~----------~~~~dr~~~~~vi~l~k~G~iv-~g~~~~  335 (460)
T 2npi_A          270 ISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVK----------KTFGPELGNNNIFFIPKLDGVS-AVDDVY  335 (460)
T ss_dssp             GGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHH----------HHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred             ccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHH----------HHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence            87 221145555555446889999999988      77          789999     99998 7 777 777654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.79  E-value=4.8e-21  Score=153.61  Aligned_cols=120  Identities=10%  Similarity=-0.051  Sum_probs=69.1

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHc------------CchhCCceEEeeccc--------hhcccCCCeEEEcc
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIR------------SESDNGRNIAMIKSS--------KDTRYAIDSVVTHD   82 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~------------gl~~~g~~i~~~~~~--------~~~~~~~~~~v~q~   82 (240)
                      ++||++++|++++|+||||||||||+ +++.            |+.............        ...+.. .++..+.
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~-~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~   78 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFA-KKHFKPTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQ-LGKLTVV   78 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHH-HHHSCGGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHH-HHHccCCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHh-CCCeEEE
Confidence            68999999999999999999999999 9543            221110000000000        000000 0110100


Q ss_pred             CceecceecCcchhHHHhhchhhhccCcEEEEcCccC----h------------------HHHHHHHHHHHhcCCCEEEE
Q 026304           83 GAKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF----F------------------EDLYEFCCNAADHDGKTVVV  140 (240)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~----~------------------~~i~~~l~~l~~~~g~tvi~  140 (240)
                      ...+..   .........++..++.+|++|+||||++    .                  .++.+.++++.+ +|.|+|+
T Consensus        79 ~~~~~~---s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi~  154 (171)
T 4gp7_A           79 DATNVQ---ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYVY  154 (171)
T ss_dssp             ESCCCS---HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEEE
T ss_pred             ECCCCC---HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEEE
Confidence            000000   0111111223455789999999999977    2                  345666667776 4999999


Q ss_pred             EecChhhh
Q 026304          141 AGLDGDYL  148 (240)
Q Consensus       141 vtHd~~~~  148 (240)
                      +|||++++
T Consensus       155 vtH~~~~~  162 (171)
T 4gp7_A          155 ILNSPEEV  162 (171)
T ss_dssp             EECSHHHH
T ss_pred             EeCCHHHh
Confidence            99999988

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.78  E-value=4.6e-19  Score=173.92  Aligned_cols=63  Identities=22%  Similarity=0.212  Sum_probs=54.1

Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc-eeec
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA-RCEL  174 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~-~~~~  174 (240)
                      +|++|||||||+      ...++++|+++++ .|.|||+||||++.+          . .||+|++|      ++ ++++
T Consensus       826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i----------~-~ADrIivLgp~gg~~~G~Iv~  893 (916)
T 3pih_A          826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLDVI----------K-NADHIIDLGPEGGKEGGYIVA  893 (916)
T ss_dssp             SSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH----------T-TCSEEEEEESSSGGGCCEEEE
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------H-hCCEEEEecCCCCCCCCEEEE
Confidence            357999999988      4578999999987 699999999999987          4 59999999      67 8999


Q ss_pred             cCCcceee
Q 026304          175 CGKRAFFT  182 (240)
Q Consensus       175 ~g~~~~~~  182 (240)
                      +|+++++.
T Consensus       894 ~Gtpeel~  901 (916)
T 3pih_A          894 TGTPEEIA  901 (916)
T ss_dssp             EESHHHHH
T ss_pred             EcCHHHHH
Confidence            99987643

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.77  E-value=2.9e-19  Score=173.96  Aligned_cols=65  Identities=22%  Similarity=0.149  Sum_probs=54.5

Q ss_pred             hhcc---CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304          105 AYAK---LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T  169 (240)
Q Consensus       105 l~~~---p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~  169 (240)
                      ++.+   |++|||||||+      ...++++|+++++ .|.|||++|||++++           ..||||++|      +
T Consensus       745 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~~i-----------~~aDrii~L~p~~g~~  812 (842)
T 2vf7_A          745 LRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQVV-----------AASDWVLDIGPGAGED  812 (842)
T ss_dssp             TSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEECSSSGGG
T ss_pred             HHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-----------HhCCEEEEECCCCCCC
Confidence            4664   79999999988      4578999999987 699999999999988           579999999      4


Q ss_pred             c-eeeccCCccee
Q 026304          170 A-RCELCGKRAFF  181 (240)
Q Consensus       170 ~-~~~~~g~~~~~  181 (240)
                      + ++++.|+++.+
T Consensus       813 ~G~Iv~~g~~~el  825 (842)
T 2vf7_A          813 GGRLVAQGTPAEV  825 (842)
T ss_dssp             CCSEEEEECHHHH
T ss_pred             CCEEEEEcCHHHH
Confidence            5 78777777653

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.77  E-value=6.7e-20  Score=179.39  Aligned_cols=65  Identities=20%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             hhcc---CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------c
Q 026304          105 AYAK---LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------T  169 (240)
Q Consensus       105 l~~~---p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~  169 (240)
                      ++.+   |++|||||||+      ...++++|+++++ .|.|||++|||++++           ..||||++|      +
T Consensus       860 L~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~i-----------~~aDrIivL~p~gG~~  927 (972)
T 2r6f_A          860 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDVI-----------KTADYIIDLGPEGGDR  927 (972)
T ss_dssp             HSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHH-----------TTCSEEEEECSSSTTS
T ss_pred             HhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHHH-----------HhCCEEEEEcCCCCCC
Confidence            4654   59999999988      4578999999987 699999999999987           479999999      4


Q ss_pred             c-eeeccCCccee
Q 026304          170 A-RCELCGKRAFF  181 (240)
Q Consensus       170 ~-~~~~~g~~~~~  181 (240)
                      + +++..|+++.+
T Consensus       928 ~G~Iv~~g~~~el  940 (972)
T 2r6f_A          928 GGQIVAVGTPEEV  940 (972)
T ss_dssp             CCSEEEEESHHHH
T ss_pred             CCEEEEecCHHHH
Confidence            5 77777776543

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.75  E-value=1.3e-18  Score=148.86  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=90.7

Q ss_pred             eEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--h-CCceEEeeccchhcccCCCeEEEccCce
Q 026304           10 AVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--D-NGRNIAMIKSSKDTRYAIDSVVTHDGAK   85 (240)
Q Consensus        10 ~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~   85 (240)
                      .++++++++.. |+++|  +++|++++|+||||||||||+ ++|.|+.  . .|.-...-.+..........+++|... 
T Consensus         5 ~~~l~~l~~~~vl~~i~--i~~g~~v~i~Gp~GsGKSTll-~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~-   80 (261)
T 2eyu_A            5 IPEFKKLGLPDKVLELC--HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREV-   80 (261)
T ss_dssp             -CCGGGSSCCTHHHHGG--GCSSEEEEEECSTTCSHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB-
T ss_pred             CCChHHCCCHHHHHHHh--hCCCCEEEEECCCCccHHHHH-HHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHh-
Confidence            56788888655 88888  999999999999999999999 9999973  2 343222211110000011234444210 


Q ss_pred             ecceecCcchhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce
Q 026304           86 LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV  165 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i  165 (240)
                          . .+...+...+...+..+|++|++|||+....+...++. +. .|.+|++++|+.+ +          ...|||+
T Consensus        81 ----g-l~~~~l~~~la~aL~~~p~illlDEp~D~~~~~~~l~~-~~-~g~~vl~t~H~~~-~----------~~~~dri  142 (261)
T 2eyu_A           81 ----G-EDTKSFADALRAALREDPDVIFVGEMRDLETVETALRA-AE-TGHLVFGTLHTNT-A----------IDTIHRI  142 (261)
T ss_dssp             ----T-TTBSCHHHHHHHHHHHCCSEEEESCCCSHHHHHHHHHH-HH-TTCEEEEEECCSS-H----------HHHHHHH
T ss_pred             ----C-CCHHHHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHH-Hc-cCCEEEEEeCcch-H----------HHHHHHH
Confidence                0 01123344455667889999999999864445555554 44 6899999999987 5          5788888


Q ss_pred             eeec
Q 026304          166 TKLT  169 (240)
Q Consensus       166 ~~l~  169 (240)
                      +.|.
T Consensus       143 ~~l~  146 (261)
T 2eyu_A          143 VDIF  146 (261)
T ss_dssp             HHTS
T ss_pred             hhhc
Confidence            7775

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.75  E-value=4.8e-19  Score=159.99  Aligned_cols=53  Identities=17%  Similarity=0.047  Sum_probs=45.2

Q ss_pred             hhhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          104 DAYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       104 ~l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      .++.+|  ++||||||++      ...+.+.|+++.  .|.+||+||||++++           .+||++++|.
T Consensus       309 ~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~itH~~~~~-----------~~~d~i~~l~  369 (415)
T 4aby_A          309 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVTHLAQIA-----------ARAHHHYKVE  369 (415)
T ss_dssp             HHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSCHHHH-----------TTCSEEEEEE
T ss_pred             HHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEeCcHHHH-----------hhcCeEEEEE
Confidence            367899  9999999988      457888888886  389999999999766           6799999994

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.73  E-value=6e-19  Score=146.11  Aligned_cols=117  Identities=15%  Similarity=0.026  Sum_probs=69.3

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEE-eeccchhcccCCCeEEEccC--ceecc----e-ecC---cch
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIA-MIKSSKDTRYAIDSVVTHDG--AKLPC----W-ALP---ELT   95 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~-~~~~~~~~~~~~~~~v~q~~--~~~~~----~-~~~---~~~   95 (240)
                      +++|++++|+||||||||||+ ++|+|+.. .|.-.. .............+|++|+.  .+...    . .+.   ...
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~~~~   97 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLA-MAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMVEPE   97 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHH-HHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTSCTT
T ss_pred             ccCCCEEEEECCCCCCHHHHH-HHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhccHH
Confidence            489999999999999999999 99999822 232110 01101011122357888864  11000    0 000   000


Q ss_pred             ---hHHHh---------hchhhhccCcEEEEcCccC--hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           96 ---SFRQK---------LGDDAYAKLDVIGIDEAQF--FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        96 ---~~~~~---------~~~~l~~~p~lllLDEP~~--~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                         .+...         +...++.+|++|||||||+  +..++++|+++ + .|+||| +|||++++
T Consensus        98 ~~~~~l~~glGq~qrv~lAraL~~~p~lllLDEPts~~~~~l~~~l~~l-~-~g~tii-vtHd~~~~  161 (208)
T 3b85_A           98 VIPKLMEAGIVEVAPLAYMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL-G-FGSKMV-VTGDITQV  161 (208)
T ss_dssp             HHHHHHHTTSEEEEEGGGGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB-C-TTCEEE-EEEC----
T ss_pred             HHHHHHHhCCchHHHHHHHHHHhcCCCEEEEeCCccccHHHHHHHHHHh-c-CCCEEE-EECCHHHH
Confidence               01111         1234689999999999988  56788888887 5 689999 99999877

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.72  E-value=2.3e-19  Score=148.61  Aligned_cols=151  Identities=13%  Similarity=-0.006  Sum_probs=85.0

Q ss_pred             eEEEcceeEee--ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeE
Q 026304           10 AVTTNQVNSGR--DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        10 ~l~~~~ls~~~--l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      |++++.++.++  |+.+ .--+++|++++|+||||||||||+ ++|+|..        ..+..+........... ..++
T Consensus         1 ~~~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll-~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~-~i~~   78 (231)
T 4a74_A            1 MATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE-RIRE   78 (231)
T ss_dssp             -CCCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH-HHHH
T ss_pred             CCcCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCEEEEEECCCCCCHH-HHHH
Confidence            35667777777  5432 247999999999999999999999 9998842        13333322211100000 0112


Q ss_pred             EEccCceecceecCcch------------hHHHhhchhh-------hccCcEEEEcCccCh------------------H
Q 026304           79 VTHDGAKLPCWALPELT------------SFRQKLGDDA-------YAKLDVIGIDEAQFF------------------E  121 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~------------~~~~~~~~~l-------~~~p~lllLDEP~~~------------------~  121 (240)
                      ++|...+.+. ++.++.            .....+ ..+       ..+|++|++|||++.                  .
T Consensus        79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~  156 (231)
T 4a74_A           79 IAQNRGLDPD-EVLKHIYVARAFNSNHQMLLVQQA-EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLA  156 (231)
T ss_dssp             HHHHTTSCHH-HHHHTEEEEECCSHHHHHHHHHHH-HHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHH
T ss_pred             HHHHcCCCHH-HHhhcEEEEecCChHHHHHHHHHH-HHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHH
Confidence            2332222211 111110            000111 011       358999999999772                  1


Q ss_pred             HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          122 DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       122 ~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++++.|.+++++.|+|||++||+.+.      ....+..+||+++.|+.
T Consensus       157 ~~~~~l~~~~~~~g~tvi~vtH~~~~------~g~~~~~~~d~~l~l~~  199 (231)
T 4a74_A          157 KHLADLHRLANLYDIAVFVTNQVQAN------GGHILAHSATLRVYLRK  199 (231)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEECC---------------CCSEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCeEEEEeecccC------cchhhHhhceEEEEEEe
Confidence            46777777766579999999996554      01112789999999975

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.72  E-value=1.8e-18  Score=161.42  Aligned_cols=159  Identities=10%  Similarity=-0.045  Sum_probs=96.7

Q ss_pred             ceEEEcceeEee-----ecCCCC-cccCcEEEEEEcCCCCcHHHHHHHH--HcCchh-CCceEEeeccc----hhcccCC
Q 026304            9 AAVTTNQVNSGR-----DRVGLP-HRNSGEIHVIMGPMFAGKTTALLRR--IRSESD-NGRNIAMIKSS----KDTRYAI   75 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl-~i~~Ge~~~iiGpNGsGKSTLLl~~--i~gl~~-~g~~i~~~~~~----~~~~~~~   75 (240)
                      ++++.+++.+..     |+++|| .+++|++++|+||||||||||+ ++  ++|+.. ....+......    ...+...
T Consensus        11 ~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~-~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~   89 (525)
T 1tf7_A           11 NNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFS-IQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS   89 (525)
T ss_dssp             ---CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHH-HHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGG
T ss_pred             CCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHH-HHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHH
Confidence            356666665543     899999 9999999999999999999999 88  678743 22222221111    0111112


Q ss_pred             CeEEEccCce---ecceecC---------cchhHH---Hhhchhh-hccCcEEEEcCccC-----------hHHHHHHHH
Q 026304           76 DSVVTHDGAK---LPCWALP---------ELTSFR---QKLGDDA-YAKLDVIGIDEAQF-----------FEDLYEFCC  128 (240)
Q Consensus        76 ~~~v~q~~~~---~~~~~~~---------~~~~~~---~~~~~~l-~~~p~lllLDEP~~-----------~~~i~~~l~  128 (240)
                      .++++|+...   +......         +...+.   .+....+ -.+|++++||||++           +.+++++++
T Consensus        90 ~g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~  169 (525)
T 1tf7_A           90 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVA  169 (525)
T ss_dssp             GTCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHH
T ss_pred             cCCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3667765321   1111111         111121   1111222 36899999999975           246888998


Q ss_pred             HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++++ .|+|||++||+++++.. +..-..+..+||+|++|++
T Consensus       170 ~l~~-~g~tvl~itH~~~~~~~-~~~~~i~~~laD~vi~L~~  209 (525)
T 1tf7_A          170 RLKQ-IGATTVMTTERIEEYGP-IARYGVEEFVSDNVVILRN  209 (525)
T ss_dssp             HHHH-HTCEEEEEEECSSSSSC-SSTTSCHHHHCSEEEEEEE
T ss_pred             HHHH-CCCEEEEEecCCCCccc-cccccceeeeeeEEEEEEE
Confidence            9887 69999999999987310 0000001466999999988

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.72  E-value=2.1e-18  Score=152.26  Aligned_cols=125  Identities=14%  Similarity=0.047  Sum_probs=86.8

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhc---ccCCCeEEEccCceecceecCcchh
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDT---RYAIDSVVTHDGAKLPCWALPELTS   96 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~   96 (240)
                      ++++||.+++|++++|+||||||||||+ ++|.|+.. ....+.........   .....+++++           ....
T Consensus       161 l~~l~~~i~~g~~v~i~G~~GsGKTTll-~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g-----------gg~~  228 (330)
T 2pt7_A          161 ISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG-----------GNIT  228 (330)
T ss_dssp             HHHHHHHHHHTCCEEEEESTTSCHHHHH-HHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB-----------TTBC
T ss_pred             HhhhhhhccCCCEEEEECCCCCCHHHHH-HHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC-----------CChh
Confidence            5678999999999999999999999999 99999732 22233322211100   0001122221           2233


Q ss_pred             HHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304           97 FRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus        97 ~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ....+...+..+|++|++|||++ .++.+.|+.+.. .+.|+++++|+++ +          ...|||++.|..
T Consensus       229 ~r~~la~aL~~~p~ilildE~~~-~e~~~~l~~~~~-g~~tvi~t~H~~~-~----------~~~~dri~~l~~  289 (330)
T 2pt7_A          229 SADCLKSCLRMRPDRIILGELRS-SEAYDFYNVLCS-GHKGTLTTLHAGS-S----------EEAFIRLANMSS  289 (330)
T ss_dssp             HHHHHHHHTTSCCSEEEECCCCS-THHHHHHHHHHT-TCCCEEEEEECSS-H----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhCCCEEEEcCCCh-HHHHHHHHHHhc-CCCEEEEEEcccH-H----------HHHhhhheehhc
Confidence            33444556788999999999998 456778877764 4568999999998 6          688999999876

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.71  E-value=5.7e-18  Score=168.32  Aligned_cols=146  Identities=10%  Similarity=0.013  Sum_probs=91.6

Q ss_pred             CceEEEcc-----eeEee------ecCCCCcccC-------cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch
Q 026304            8 PAAVTTNQ-----VNSGR------DRVGLPHRNS-------GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK   69 (240)
Q Consensus         8 ~~~l~~~~-----ls~~~------l~~vsl~i~~-------Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~   69 (240)
                      .++|++++     |++.|      ++|++|++++       |++++|+||||||||||| |++ |+..-           
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlL-r~i-Gl~~~-----------  814 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLM-RQA-GLLAV-----------  814 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHH-HHH-HHHHH-----------
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHH-HHH-HHHHH-----------
Confidence            35799999     88765      7899999987       999999999999999999 999 86320           


Q ss_pred             hcccCCCeEEEccCc-------eecceecCcch-----hHHHh-----hchhhhccCcEEEEcCccC----h---HHHHH
Q 026304           70 DTRYAIDSVVTHDGA-------KLPCWALPELT-----SFRQK-----LGDDAYAKLDVIGIDEAQF----F---EDLYE  125 (240)
Q Consensus        70 ~~~~~~~~~v~q~~~-------~~~~~~~~~~~-----~~~~~-----~~~~l~~~p~lllLDEP~~----~---~~i~~  125 (240)
                      ..  ....+|||...       ++..+...+..     .+...     ....++.+|+++|||||+.    .   ..++.
T Consensus       815 ~a--qiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~  892 (1022)
T 2o8b_B          815 MA--QMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANA  892 (1022)
T ss_dssp             HH--TTTCCEESSEEEECCCSBEEEECC---------CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHH
T ss_pred             Hh--heeEEeccCcCCCCHHHHHHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHH
Confidence            00  01124443321       11111111110     11111     1123578999999999965    2   23678


Q ss_pred             HHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceee--ccCCc
Q 026304          126 FCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCE--LCGKR  178 (240)
Q Consensus       126 ~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~--~~g~~  178 (240)
                      +++.+.++.|.++|++||+.+++          ..+||++.+++.++.  ..|.+
T Consensus       893 il~~L~~~~g~~vl~~TH~~el~----------~~~~d~~~v~~g~~~~~~~~~~  937 (1022)
T 2o8b_B          893 VVKELAETIKCRTLFSTHYHSLV----------EDYSQNVAVRLGHMACMVENEC  937 (1022)
T ss_dssp             HHHHHHHTSCCEEEEECCCHHHH----------HHTSSCSSEEEEEEEEC-----
T ss_pred             HHHHHHhcCCCEEEEEeCCHHHH----------HHhCCcceeecCeEEEEEecCc
Confidence            88888763489999999999999          889999988866443  44544

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.69  E-value=5.7e-17  Score=144.41  Aligned_cols=129  Identities=16%  Similarity=0.116  Sum_probs=86.8

Q ss_pred             ecCCCC-------cccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEee-ccchhcccCCCeEEEccCceeccee
Q 026304           21 DRVGLP-------HRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMI-KSSKDTRYAIDSVVTHDGAKLPCWA   90 (240)
Q Consensus        21 l~~vsl-------~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~-~~~~~~~~~~~~~v~q~~~~~~~~~   90 (240)
                      ++++.+       ...+|++++|+||||||||||+ ++|.|+..  .+..+... .+.........+++.|.....    
T Consensus       106 l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL-~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~----  180 (356)
T 3jvv_A          106 MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTL-AAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHR----  180 (356)
T ss_dssp             TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHH-HHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTT----
T ss_pred             HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHH-HHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeecc----
Confidence            566666       6788999999999999999999 99999732  24443322 221111111124555532211    


Q ss_pred             cCcchhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304           91 LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus        91 ~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                        +...+...+...+.++|++|++|||+.. +..+.+.+++. .|.+|++++|+.+.+           ..|||++.|.
T Consensus       181 --~~~~~~~~La~aL~~~PdvillDEp~d~-e~~~~~~~~~~-~G~~vl~t~H~~~~~-----------~~~dRli~l~  244 (356)
T 3jvv_A          181 --DTLGFSEALRSALREDPDIILVGEMRDL-ETIRLALTAAE-TGHLVFGTLHTTSAA-----------KTIDRVVDVF  244 (356)
T ss_dssp             --TBSCHHHHHHHHTTSCCSEEEESCCCSH-HHHHHHHHHHH-TTCEEEEEESCSSHH-----------HHHHHHHHTS
T ss_pred             --ccCCHHHHHHHHhhhCcCEEecCCCCCH-HHHHHHHHHHh-cCCEEEEEEccChHH-----------HHHHHHhhhc
Confidence              1233444555667899999999999863 45666666766 699999999999876           5678888773

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.67  E-value=3.3e-17  Score=161.30  Aligned_cols=144  Identities=19%  Similarity=0.159  Sum_probs=86.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCC-CeEEEccCceecceecCcchh
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAI-DSVVTHDGAKLPCWALPELTS   96 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~-~~~v~q~~~~~~~~~~~~~~~   96 (240)
                      ++|++|++++|++++|+||||||||||| |++++..+   .|.-+   +.. ....+. ..+..+.+. .... ......
T Consensus       652 ~ndisl~~~~g~i~~ItGpNGsGKSTlL-r~ial~~~~aq~G~~v---pa~-~~~~~~~d~i~~~ig~-~d~l-~~~lSt  724 (934)
T 3thx_A          652 PNDVYFEKDKQMFHIITGPNMGGKSTYI-RQTGVIVLMAQIGCFV---PCE-SAEVSIVDCILARVGA-GDSQ-LKGVST  724 (934)
T ss_dssp             CEEEEEETTTBCEEEEECCTTSSHHHHH-HHHHHHHHHHHHTCCB---SEE-EEEEECCSEEEEECC-----------CH
T ss_pred             cccceeecCCCeEEEEECCCCCCHHHHH-HHHHHHHHHHhcCCcc---ccc-cccchHHHHHHHhcCc-hhhH-HHhHhh
Confidence            5689999999999999999999999999 99844311   11100   000 000000 011111110 0000 000001


Q ss_pred             HH---Hhhchhh--hccCcEEEEcCccC------hHHH-HHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304           97 FR---QKLGDDA--YAKLDVIGIDEAQF------FEDL-YEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus        97 ~~---~~~~~~l--~~~p~lllLDEP~~------~~~i-~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                      +.   ......+  +.+|+++|||||+.      ...+ +.++..+.++.|.++|++||+.+..           .+||+
T Consensus       725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-----------~lad~  793 (934)
T 3thx_A          725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-----------ALANQ  793 (934)
T ss_dssp             HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-----------GGGGT
T ss_pred             hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-----------HHhcc
Confidence            10   0111122  68999999999976      2234 5666777654589999999997765           79999


Q ss_pred             eeeecc-eeeccCCcceee
Q 026304          165 VTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       165 i~~l~~-~~~~~g~~~~~~  182 (240)
                      +..+.+ ++...++++.+.
T Consensus       794 ~~~v~ng~v~~~~~~~~l~  812 (934)
T 3thx_A          794 IPTVNNLHVTALTTEETLT  812 (934)
T ss_dssp             CTTEEEEEEEEEEETTEEE
T ss_pred             cceeEeeEEEEEecCCcEE
Confidence            999998 887777666543

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.66  E-value=2.9e-16  Score=140.33  Aligned_cols=55  Identities=20%  Similarity=0.159  Sum_probs=47.8

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      .+|++||||||++      ...++++|+++.+ .|.|||++|||+++.           ..||++++|++ +++
T Consensus       302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~~~-----------~~~d~~~~l~~G~i~  363 (365)
T 3qf7_A          302 GRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDREFS-----------EAFDRKLRITGGVVV  363 (365)
T ss_dssp             TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHHHH-----------TTCSCEEEEETTEEC
T ss_pred             CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchHHH-----------HhCCEEEEEECCEEE
Confidence            5999999999988      4578888988876 699999999999876           67999999998 664

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.65  E-value=3.4e-16  Score=136.52  Aligned_cols=146  Identities=14%  Similarity=0.056  Sum_probs=91.4

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-----------hcccCCCeEEEccCc-eecc
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-----------DTRYAIDSVVTHDGA-KLPC   88 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-----------~~~~~~~~~v~q~~~-~~~~   88 (240)
                      .++||++++|++++|+|||||||||++ +.|+|+. ..+..+.......           ..+....++++|... .++.
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            578999999999999999999999999 9999973 2333333322110           001112478888776 6665


Q ss_pred             eecCcchhHHHh------------------------------hchhhhccCc--EEEEcCccChHHHHHHHHHHHhcCCC
Q 026304           89 WALPELTSFRQK------------------------------LGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADHDGK  136 (240)
Q Consensus        89 ~~~~~~~~~~~~------------------------------~~~~l~~~p~--lllLDEP~~~~~i~~~l~~l~~~~g~  136 (240)
                      .++.++..+...                              +...++.+|+  +|+|| |++-.+....++++.++.|.
T Consensus       170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~  248 (302)
T 3b9q_A          170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGI  248 (302)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHHHHHHHhcCC
Confidence            555554433211                              0112457899  99999 98843334455667654689


Q ss_pred             EEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          137 TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       137 tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |++++||. +.....-........+.+.|.++..
T Consensus       249 t~iiiThl-D~~~~~g~~l~~~~~~~~pi~~i~~  281 (302)
T 3b9q_A          249 TGLILTKL-DGSARGGCVVSVVEELGIPVKFIGV  281 (302)
T ss_dssp             CEEEEECC-SSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred             CEEEEeCC-CCCCccChheehHHHHCCCEEEEeC
Confidence            99999993 4443322223333556677777654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.65  E-value=4e-17  Score=158.73  Aligned_cols=135  Identities=10%  Similarity=0.022  Sum_probs=84.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHH-
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQ-   99 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~-   99 (240)
                      ++|++|+ ++|++++|+||||||||||| |+++|+.+.++.-...+. ...+.   +++.|   ++..+++.++..... 
T Consensus       598 lndisl~-~~g~i~~ItGpNGsGKSTlL-r~iagl~~~~q~G~~vpa-~~~~i---~~~~~---i~~~~~~~d~l~~~~s  668 (800)
T 1wb9_A          598 ANPLNLS-PQRRMLIITGPNMGGKSTYM-RQTALIALMAYIGSYVPA-QKVEI---GPIDR---IFTRVGAADDLASGRS  668 (800)
T ss_dssp             CEEEEEC-SSSCEEEEECCTTSSHHHHH-HHHHHHHHHHTTTCCBSS-SEEEE---CCCCE---EEEEEC----------
T ss_pred             eeccccc-CCCcEEEEECCCCCChHHHH-HHHHHHHHHHhcCcccch-hcccc---eeHHH---HHhhCCHHHHHHhhhh
Confidence            7889999 99999999999999999999 999997442211001111 11111   22222   233333333221110 


Q ss_pred             -------hhc--hhhhccCcEEEEcCccC------hHH-HHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhcc
Q 026304          100 -------KLG--DDAYAKLDVIGIDEAQF------FED-LYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLAD  163 (240)
Q Consensus       100 -------~~~--~~l~~~p~lllLDEP~~------~~~-i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad  163 (240)
                             .+.  -..+.+|+++|||||+.      ... .+.++..+.++.|.++|++|||.+..           .+||
T Consensus       669 tf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-----------~l~d  737 (800)
T 1wb9_A          669 TFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-----------QLPE  737 (800)
T ss_dssp             -CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-----------GHHH
T ss_pred             hhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-----------HHhh
Confidence                   011  11368999999999943      223 46778888763489999999999776           5899


Q ss_pred             ceeeecc-eeecc
Q 026304          164 TVTKLTA-RCELC  175 (240)
Q Consensus       164 ~i~~l~~-~~~~~  175 (240)
                      ++..+.+ ++...
T Consensus       738 ~~~~v~n~~~~~~  750 (800)
T 1wb9_A          738 KMEGVANVHLDAL  750 (800)
T ss_dssp             HSTTEEEEEEEEE
T ss_pred             hhhceEEEEEEEE
Confidence            8877777 55544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.64  E-value=5e-16  Score=125.41  Aligned_cols=119  Identities=13%  Similarity=0.024  Sum_probs=70.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch---hCCceEEeeccchhcccCCCeEEEccCceecce----------ecC-------
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES---DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCW----------ALP-------   92 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~---~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~----------~~~-------   92 (240)
                      .++|+||||||||||+ ++|+|+.   +.|.........  ......++++|+......+          ...       
T Consensus         2 ~i~l~G~nGsGKTTLl-~~l~g~l~i~~~g~~~~~~~~~--~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS   78 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLV-KKIVERLGKRAIGFWTEEVRDP--ETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ   78 (178)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHHHGGGEEEEEEEEEC--------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHhCCcCCCEEhhhhccc--cccceeEEEeecCcHHHHHHHhhcCCccccccccccCcC
Confidence            5899999999999999 9999963   334332211100  1112347877754111000          000       


Q ss_pred             cchhHHHhhchh-----hhccCcEEEEcC--ccCh-H-HHHHHHHHHHhcCCCEEEEEe---cChhhhhcccchHHHHHh
Q 026304           93 ELTSFRQKLGDD-----AYAKLDVIGIDE--AQFF-E-DLYEFCCNAADHDGKTVVVAG---LDGDYLRRSFGSVLDIIP  160 (240)
Q Consensus        93 ~~~~~~~~~~~~-----l~~~p~lllLDE--P~~~-~-~i~~~l~~l~~~~g~tvi~vt---Hd~~~~~~~f~~~~~L~~  160 (240)
                      ........+...     ++.+|++|+|||  |++. + ...+.+.++.++.+.|+|+++   ||.+++          ..
T Consensus        79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~----------~~  148 (178)
T 1ye8_A           79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLV----------KE  148 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHH----------HH
T ss_pred             HHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHH----------HH
Confidence            011111122343     678999999999  9872 2 344555555544677788888   488888          88


Q ss_pred             hccc
Q 026304          161 LADT  164 (240)
Q Consensus       161 ~ad~  164 (240)
                      +|+|
T Consensus       149 i~~r  152 (178)
T 1ye8_A          149 IRRL  152 (178)
T ss_dssp             HHTC
T ss_pred             HHhc
Confidence            8887

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.64  E-value=3.9e-17  Score=141.26  Aligned_cols=159  Identities=16%  Similarity=0.093  Sum_probs=90.8

Q ss_pred             EcceeE-ee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hC-CceEEeeccch---hcccCCCeEEEccCc
Q 026304           13 TNQVNS-GR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DN-GRNIAMIKSSK---DTRYAIDSVVTHDGA   84 (240)
Q Consensus        13 ~~~ls~-~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~-g~~i~~~~~~~---~~~~~~~~~v~q~~~   84 (240)
                      +.+++. ++  |+++++.+++|++++|+||||||||||+ +.|+|.. .. |..+..+....   ..+.+...+..+...
T Consensus        14 ~~~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~-~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~~   92 (296)
T 1cr0_A           14 SVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFV-RQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRL   92 (296)
T ss_dssp             CCCBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHH-HHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCG
T ss_pred             cCCcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHH-HHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCCh
Confidence            356666 66  8999999999999999999999999999 9998863 23 64554432111   000000000000000


Q ss_pred             -e---------------------ec--ceecCc------chhHHHhh-chhhhccCcEEEEcCccC---h----------
Q 026304           85 -K---------------------LP--CWALPE------LTSFRQKL-GDDAYAKLDVIGIDEAQF---F----------  120 (240)
Q Consensus        85 -~---------------------~~--~~~~~~------~~~~~~~~-~~~l~~~p~lllLDEP~~---~----------  120 (240)
                       .                     +.  .+.+.+      ...+..++ ...+..+|++|++|||++   .          
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~~~d~~~~~  172 (296)
T 1cr0_A           93 RQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMI  172 (296)
T ss_dssp             GGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC-----------CHHH
T ss_pred             hhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCCCCHHHHH
Confidence             0                     00  000000      01111111 122567999999999987   1          


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecCh--hhh----------hcccchHHHHHhhccceeeecc-ee
Q 026304          121 EDLYEFCCNAADHDGKTVVVAGLDG--DYL----------RRSFGSVLDIIPLADTVTKLTA-RC  172 (240)
Q Consensus       121 ~~i~~~l~~l~~~~g~tvi~vtHd~--~~~----------~~~f~~~~~L~~~ad~i~~l~~-~~  172 (240)
                      .++++.|++++++.|+|||++||+.  +.-          -..+-.+..+..+||+|++|+. +.
T Consensus       173 ~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~  237 (296)
T 1cr0_A          173 DNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ  237 (296)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred             HHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence            2477778888765699999999996  300          0001111233789999999987 53

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.63  E-value=2.8e-16  Score=129.81  Aligned_cols=147  Identities=11%  Similarity=0.062  Sum_probs=82.9

Q ss_pred             ecCCCC-cccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-----hcccCCCeEEEccCc-----eecc
Q 026304           21 DRVGLP-HRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-----DTRYAIDSVVTHDGA-----KLPC   88 (240)
Q Consensus        21 l~~vsl-~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-----~~~~~~~~~v~q~~~-----~~~~   88 (240)
                      |+++.. .+++|++++|+||||||||||+ +.+++.. ..+..+..+....     ..+....++.++...     ....
T Consensus        12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (235)
T 2w0m_A           12 FDKLIQGGIPQGFFIALTGEPGTGKTIFS-LHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDA   90 (235)
T ss_dssp             HHGGGTTSEETTCEEEEECSTTSSHHHHH-HHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEEC
T ss_pred             HHHHhcCCCcCCCEEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEec
Confidence            778887 8999999999999999999999 8888642 2333333332111     001000111111100     0000


Q ss_pred             --------eecC--cchhHHHhhch-hhhccCc--EEEEcCccC--------hHHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304           89 --------WALP--ELTSFRQKLGD-DAYAKLD--VIGIDEAQF--------FEDLYEFCCNAADHDGKTVVVAGLDGDY  147 (240)
Q Consensus        89 --------~~~~--~~~~~~~~~~~-~l~~~p~--lllLDEP~~--------~~~i~~~l~~l~~~~g~tvi~vtHd~~~  147 (240)
                              ....  ....+...+.. ....+|+  +|++|||++        +.++++.|++++++.|.|||+++|+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~  170 (235)
T 2w0m_A           91 LMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAIT  170 (235)
T ss_dssp             CC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC----
T ss_pred             cccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence                    0000  11111111111 1235899  999999985        2468888888876579999999999832


Q ss_pred             hhcccchHHHHHhhccceeeecc
Q 026304          148 LRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       148 ~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      -.+...  ..+..+||++++|+.
T Consensus       171 ~~~~~~--~~~~~~~d~vi~l~~  191 (235)
T 2w0m_A          171 TSQAFG--FGVEHVADGIIRFRR  191 (235)
T ss_dssp             ---------CHHHHCSEEEEEEE
T ss_pred             cccccc--cchheeeeEEEEEEE
Confidence            000000  123889999999987

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.60  E-value=2.1e-15  Score=134.33  Aligned_cols=146  Identities=14%  Similarity=0.055  Sum_probs=91.7

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-----------hcccCCCeEEEccCc-eecc
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-----------DTRYAIDSVVTHDGA-KLPC   88 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-----------~~~~~~~~~v~q~~~-~~~~   88 (240)
                      .++||++++|++++|+||||||||||+ +.|+|+. ..+..+.......           ..+....++++|... .++.
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll-~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~  226 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSL-GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  226 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHH-HHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence            578999999999999999999999999 9999973 2333333322110           001112478888766 5555


Q ss_pred             eecCcchhHHHh------------------------------hchhhhccCc--EEEEcCccChHHHHHHHHHHHhcCCC
Q 026304           89 WALPELTSFRQK------------------------------LGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADHDGK  136 (240)
Q Consensus        89 ~~~~~~~~~~~~------------------------------~~~~l~~~p~--lllLDEP~~~~~i~~~l~~l~~~~g~  136 (240)
                      .++.+++.+...                              +...++.+|+  +|+|| |++-.+....++++.+..|.
T Consensus       227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~~~~~~~g~  305 (359)
T 2og2_A          227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAREFNEVVGI  305 (359)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHHHHHHhcCC
Confidence            555444433211                              1122467899  99999 98843334455666654689


Q ss_pred             EEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          137 TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       137 tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |+|++|| ++.....-.....+..++..|.++..
T Consensus       306 t~iiiTh-lD~~~~gG~~lsi~~~~~~pI~~ig~  338 (359)
T 2og2_A          306 TGLILTK-LDGSARGGCVVSVVEELGIPVKFIGV  338 (359)
T ss_dssp             CEEEEES-CTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred             eEEEEec-CcccccccHHHHHHHHhCCCEEEEeC
Confidence            9999999 34443322222333556667766654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.60  E-value=3.8e-16  Score=153.46  Aligned_cols=120  Identities=7%  Similarity=-0.040  Sum_probs=70.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhH---
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF---   97 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~---   97 (240)
                      ++|+||++++|++++|+||||||||||| |+++++.+..+.-...+. ....      +.....++..+.+.++...   
T Consensus       663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlL-r~i~~i~~~aq~g~~vpa-~~~~------i~~~d~i~~~ig~~d~l~~~~s  734 (918)
T 3thx_B          663 PNNTDLSEDSERVMIITGPNMGGKSSYI-KQVALITIMAQIGSYVPA-EEAT------IGIVDGIFTRMGAADNIYKGRS  734 (918)
T ss_dssp             CEEEEECTTSCCEEEEESCCCHHHHHHH-HHHHHHHHHHHHTCCBSS-SEEE------EECCSEEEEEC----------C
T ss_pred             cccccccCCCCeEEEEECCCCCchHHHH-HHHHHHHHHhhcCccccc-hhhh------hhHHHHHHHhCChHHHHHHhHH
Confidence            6799999999999999999999999999 999875321110000111 0000      0111111222222211110   


Q ss_pred             --HH---hhc--hhhhccCcEEEEcCccC------hHHHH-HHHHHHHhcCCCEEEEEecChhhh
Q 026304           98 --RQ---KLG--DDAYAKLDVIGIDEAQF------FEDLY-EFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        98 --~~---~~~--~~l~~~p~lllLDEP~~------~~~i~-~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                        ..   ...  ...+.+|++||||||++      ...+. .++..+.++.|.++|++|||++.+
T Consensus       735 tfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~  799 (918)
T 3thx_B          735 TFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC  799 (918)
T ss_dssp             CHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             HhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence              00   000  01268999999999977      22454 667777654699999999998776

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.57  E-value=3e-15  Score=141.89  Aligned_cols=165  Identities=14%  Similarity=0.021  Sum_probs=94.5

Q ss_pred             CceEEEcceeEee-------ec----------CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch---------hCCce
Q 026304            8 PAAVTTNQVNSGR-------DR----------VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES---------DNGRN   61 (240)
Q Consensus         8 ~~~l~~~~ls~~~-------l~----------~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~---------~~g~~   61 (240)
                      +++++++|+++.|       ++          +.+++++.   ++|+||||||||||| ++|+|+.         ++|.+
T Consensus         8 ~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL-~~I~Gl~~P~~sG~vt~~g~~   83 (608)
T 3szr_A            8 PGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVL-EALSGVALPRGSGIVTRCPLV   83 (608)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHH-HHHHSCC-------CCCSCEE
T ss_pred             CchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHH-HHHhCCCCCCCCCeEEEcCEE
Confidence            4478899999998       11          23566665   999999999999999 9999973         23444


Q ss_pred             EEeeccc-hhcccCCCeEEEccCceecceecCcchhHHHhh-ch--------------hhhccCcEEEEcCc------cC
Q 026304           62 IAMIKSS-KDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL-GD--------------DAYAKLDVIGIDEA------QF  119 (240)
Q Consensus        62 i~~~~~~-~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~-~~--------------~l~~~p~lllLDEP------~~  119 (240)
                      +...... ........++++|+..+++..++.++....... ++              .....|+++++|||      ++
T Consensus        84 i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~  163 (608)
T 3szr_A           84 LKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVG  163 (608)
T ss_dssp             EEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------C
T ss_pred             EEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence            3222111 011112247889988888888888887664322 10              12457999999999      55


Q ss_pred             ------hHHHHHHHHHHHh-cCCCEEEEEecChhhhhcccchHHHHHhh-----ccceeeecc-eeeccCCcc
Q 026304          120 ------FEDLYEFCCNAAD-HDGKTVVVAGLDGDYLRRSFGSVLDIIPL-----ADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       120 ------~~~i~~~l~~l~~-~~g~tvi~vtHd~~~~~~~f~~~~~L~~~-----ad~i~~l~~-~~~~~g~~~  179 (240)
                            ..++.++++++.. ..+.++++++||++.+...   ..++...     ...|+++.+ ..+..|+.+
T Consensus       164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~---~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~  233 (608)
T 3szr_A          164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTE---ALSMAQEVDPEGDRTIGILTKPDLVDKGTED  233 (608)
T ss_dssp             CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCH---HHHHHHHHCSSCCSEEEEEECGGGSSSSSTT
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHH---HHHHHHHHhhcCCceEEEecchhhcCcccHH
Confidence                  3578888888643 3478899999999876332   1222221     244677776 555566554

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.56  E-value=1.2e-16  Score=132.75  Aligned_cols=35  Identities=29%  Similarity=0.208  Sum_probs=24.9

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      |++|||++++|++++|+||||||||||+ ++|.|+.
T Consensus        13 l~~isl~i~~G~~~~lvGpsGsGKSTLl-~~L~g~~   47 (218)
T 1z6g_A           13 GLVPRGSMNNIYPLVICGPSGVGKGTLI-KKLLNEF   47 (218)
T ss_dssp             ---------CCCCEEEECSTTSSHHHHH-HHHHHHS
T ss_pred             ccCCceecCCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence            8999999999999999999999999999 9999965

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.55  E-value=7.1e-15  Score=128.96  Aligned_cols=50  Identities=12%  Similarity=0.100  Sum_probs=39.7

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce--eeec
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV--TKLT  169 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i--~~l~  169 (240)
                      .+|++||||||++      ...+.++++++.  .+.+||++||+++ +          ..+||++  +.|.
T Consensus       240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~-~----------~~~~d~~~~v~~~  297 (322)
T 1e69_A          240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI-V----------MEAADLLHGVTMV  297 (322)
T ss_dssp             SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT-G----------GGGCSEEEEEEES
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH-H----------HhhCceEEEEEEe
Confidence            5789999999988      346888888874  4789999999965 4          5789987  5554

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.54  E-value=2e-16  Score=143.33  Aligned_cols=129  Identities=13%  Similarity=0.061  Sum_probs=81.9

Q ss_pred             ecCCCCcccCcE--------------------EEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCCeE
Q 026304           21 DRVGLPHRNSGE--------------------IHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus        21 l~~vsl~i~~Ge--------------------~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~~~   78 (240)
                      +++|||++++|+                    +++|+||||||||||+ ++|.|+..  .|. +....... .+   .++
T Consensus        39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLl-n~L~Gl~~p~~Gs-I~~~g~~~-t~---~~~  112 (413)
T 1tq4_A           39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFI-NTLRGIGNEEEGA-AKTGVVEV-TM---ERH  112 (413)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHH-HHHHTCCTTSTTS-CCCCC-----C---CCE
T ss_pred             hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHH-HHHhCCCCccCce-EEECCeec-ce---eEE
Confidence            889999999999                    9999999999999999 99999621  221 11100000 11   145


Q ss_pred             EEccCceecceecCcchhH----------HHh-----------------------hchhhhc----------cCcEEEEc
Q 026304           79 VTHDGAKLPCWALPELTSF----------RQK-----------------------LGDDAYA----------KLDVIGID  115 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~~~----------~~~-----------------------~~~~l~~----------~p~lllLD  115 (240)
                      ++|.. .++.+++.++..+          ...                       +...+..          +|+++++|
T Consensus       113 v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLD  191 (413)
T 1tq4_A          113 PYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITN  191 (413)
T ss_dssp             EEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHH
T ss_pred             ecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccC
Confidence            66653 2333333322111          000                       1112445          99999999


Q ss_pred             CccC------hHHHHHHHHHHHh----cC----CCEEEEEecChhh--hhcccchHHHHHhhcccee
Q 026304          116 EAQF------FEDLYEFCCNAAD----HD----GKTVVVAGLDGDY--LRRSFGSVLDIIPLADTVT  166 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~----~~----g~tvi~vtHd~~~--~~~~f~~~~~L~~~ad~i~  166 (240)
                      ||++      +.++++.++++..    +.    ..+|++++|+++.  +          ..+||++.
T Consensus       192 EPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~----------e~L~d~I~  248 (413)
T 1tq4_A          192 EADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF----------PVLMDKLI  248 (413)
T ss_dssp             HHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH----------HHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH----------HHHHHHHH
Confidence            9987      4578888887741    12    3678899999887  7          66666664

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.53  E-value=1.4e-14  Score=129.73  Aligned_cols=122  Identities=16%  Similarity=0.131  Sum_probs=78.4

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDD  104 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~  104 (240)
                      +++|++++|+||||||||||+ ++|.|+..   .|.-+..-.+.........++++|...-.      +...+...+...
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll-~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~------~~~~~~~~l~~~  205 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTI-ASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGE------DTKSFADALRAA  205 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHH-HHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTT------TBSCSHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHH-HHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCC------CHHHHHHHHHHH
Confidence            789999999999999999999 99999732   34332222121111112246777731000      011122333444


Q ss_pred             hhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          105 AYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       105 l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      +..+|++|++|||+....+...++. +. .|.+|++++|+.+ +          ...+||++.|.
T Consensus       206 L~~~pd~illdE~~d~e~~~~~l~~-~~-~g~~vi~t~H~~~-~----------~~~~~rl~~l~  257 (372)
T 2ewv_A          206 LREDPDVIFVGEMRDLETVETALRA-AE-TGHLVFGTLHTNT-A----------IDTIHRIVDIF  257 (372)
T ss_dssp             TTSCCSEEEESCCCSHHHHHHHHHH-HT-TTCEEEECCCCCS-H----------HHHHHHHHHTS
T ss_pred             hhhCcCEEEECCCCCHHHHHHHHHH-Hh-cCCEEEEEECcch-H----------HHHHHHHHHhc
Confidence            5679999999999875555555554 34 6899999999976 6          56777776553

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.53  E-value=2.2e-15  Score=145.86  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=69.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSF   97 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~   97 (240)
                      ++|+||+   |++++|+||||||||||| |+++|+..   .|.-+    +....+   .++++|   ++..+++.++...
T Consensus       569 l~disl~---g~i~~I~GpNGsGKSTlL-r~iagl~~~~~~G~~v----pa~~~~---i~~v~~---i~~~~~~~d~l~~  634 (765)
T 1ewq_A          569 PNDLEMA---HELVLITGPNMAGKSTFL-RQTALIALLAQVGSFV----PAEEAH---LPLFDG---IYTRIGASDDLAG  634 (765)
T ss_dssp             CEEEEES---SCEEEEESCSSSSHHHHH-HHHHHHHHHHTTTCCB----SSSEEE---ECCCSE---EEEECCC------
T ss_pred             eeeccCC---CcEEEEECCCCCChHHHH-HHHHhhhhhcccCcee----ehhccc---eeeHHH---hhccCCHHHHHHh
Confidence            5678887   999999999999999999 99999743   23221    111111   123332   3444444433221


Q ss_pred             H--------Hhhchhh--hccCcEEEEcCc---cC-hH--HH-HHHHHHHHhcCCCEEEEEecChhhh
Q 026304           98 R--------QKLGDDA--YAKLDVIGIDEA---QF-FE--DL-YEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        98 ~--------~~~~~~l--~~~p~lllLDEP---~~-~~--~i-~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      .        ..+...+  +.+|+++|||||   |+ .+  .. ..++..+.+ .|.++|++||+.++.
T Consensus       635 g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~  701 (765)
T 1ewq_A          635 GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELT  701 (765)
T ss_dssp             CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHH
T ss_pred             cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH
Confidence            1        0112233  789999999999   77 22  11 234444444 589999999998876

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.51  E-value=1.9e-14  Score=134.21  Aligned_cols=148  Identities=14%  Similarity=0.016  Sum_probs=91.6

Q ss_pred             eEEEcceeEee--ecC-CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-h----cccCCCeEEE
Q 026304           10 AVTTNQVNSGR--DRV-GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-D----TRYAIDSVVT   80 (240)
Q Consensus        10 ~l~~~~ls~~~--l~~-vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-~----~~~~~~~~v~   80 (240)
                      .+++++++.+|  ++. ++..+++|++++|+||||||||||+ +.++|.. ..|..+..+.... .    .+....++-.
T Consensus       257 ~~~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl-~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~  335 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLV-SRFVENACANKERAILFAYEESRAQLLRNAYSWGMDF  335 (525)
T ss_dssp             CCCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHH-HHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCH
T ss_pred             ccccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHH-HHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCH
Confidence            35677777776  554 3679999999999999999999999 9998863 3455443332111 0    0000001100


Q ss_pred             c----cCce-ecc---eecCcchhHHHhhchhhhccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCEEEEE
Q 026304           81 H----DGAK-LPC---WALPELTSFRQKLGDDAYAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKTVVVA  141 (240)
Q Consensus        81 q----~~~~-~~~---~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~tvi~v  141 (240)
                      +    .+.+ +..   ..+.........+...+..+|++|++| |++           +..+.++++.+++ .|+|||++
T Consensus       336 ~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvilv  413 (525)
T 1tf7_A          336 EEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLFT  413 (525)
T ss_dssp             HHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEEE
T ss_pred             HHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEEE
Confidence            0    0000 000   000111111111233457899999999 955           2356777777776 79999999


Q ss_pred             ecCh----------hhhhcccchHHHHHhhccceeeecc
Q 026304          142 GLDG----------DYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       142 tHd~----------~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ||+.          ..+          ..+||+|++|+.
T Consensus       414 sh~~~~~~~~~~~~~~l----------~~~~D~vi~L~~  442 (525)
T 1tf7_A          414 NTSDQFMGAHSITDSHI----------STITDTIILLQY  442 (525)
T ss_dssp             EECSSSSCCCSSCSSCC----------TTTCSEEEEEEE
T ss_pred             ECcccccCcccccCccc----------ceeeeEEEEEEE
Confidence            9998          555          789999999987

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.50  E-value=6.3e-16  Score=141.19  Aligned_cols=157  Identities=15%  Similarity=0.081  Sum_probs=101.2

Q ss_pred             CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeecc---ch--------
Q 026304            8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKS---SK--------   69 (240)
Q Consensus         8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~---~~--------   69 (240)
                      +++++++++++.|      ++++ |++.+|++++|+||||||||||+ ++|+|+.-.. ..+.....   ..        
T Consensus       129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl-~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~  206 (438)
T 2dpy_A          129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLL-GMMARYTRADVIVVGLIGERGREVKDFIENIL  206 (438)
T ss_dssp             CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHH-HHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred             CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHH-HHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence            3578999999988      7899 99999999999999999999999 9999973211 12222111   00        


Q ss_pred             --hcccCCCeEEEcc-CceecceecCcchhHHHhhchhhhccCc-EEEEc-----------------Cc--cC------h
Q 026304           70 --DTRYAIDSVVTHD-GAKLPCWALPELTSFRQKLGDDAYAKLD-VIGID-----------------EA--QF------F  120 (240)
Q Consensus        70 --~~~~~~~~~v~q~-~~~~~~~~~~~~~~~~~~~~~~l~~~p~-lllLD-----------------EP--~~------~  120 (240)
                        ....+..++++|. ...++.+++.++..+.......  ...+ ..++|                 ||  +.      +
T Consensus       207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~--~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~  284 (438)
T 2dpy_A          207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD--RGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVF  284 (438)
T ss_dssp             HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHH
T ss_pred             cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh--CCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHH
Confidence              0111224788884 4445555665554433221110  1122 12333                 33  22      3


Q ss_pred             HHHHHHHHHHHh---cCCC-----EEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          121 EDLYEFCCNAAD---HDGK-----TVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       121 ~~i~~~l~~l~~---~~g~-----tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      ..+.+++.++.+   +.|.     ||+++|||++ .           .+||+++.|.+ +++..++++.
T Consensus       285 ~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~-----------~iad~v~~l~dG~Ivl~~~~~~  341 (438)
T 2dpy_A          285 AKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-D-----------PIADSARAILDGHIVLSRRLAE  341 (438)
T ss_dssp             HHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-C-----------HHHHHHHHHSSEEEEECHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-c-----------hhhceEEEEeCcEEEEeCCHHH
Confidence            467777777654   2364     9999999998 4           68999999999 8888877654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.46  E-value=2.3e-13  Score=120.22  Aligned_cols=52  Identities=17%  Similarity=0.203  Sum_probs=43.8

Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      +.+|++||||||++      +..++++|+++.+ .|.+||++|||.+ +          ..+||+++.|.
T Consensus       270 ~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~-~----------~~~~d~~~~l~  327 (339)
T 3qkt_A          270 AGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-L----------KDAADHVIRIS  327 (339)
T ss_dssp             TTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-G----------GGGCSEEEEEE
T ss_pred             cCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH-H----------HHhCCEEEEEE
Confidence            45899999999988      3478888888876 5889999999965 5          58899999886

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.43  E-value=6.2e-14  Score=115.01  Aligned_cols=145  Identities=13%  Similarity=0.074  Sum_probs=80.7

Q ss_pred             ecCCCC-cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch--h-cc----cCCCeEEEcc---Ccee-cc
Q 026304           21 DRVGLP-HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK--D-TR----YAIDSVVTHD---GAKL-PC   88 (240)
Q Consensus        21 l~~vsl-~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~--~-~~----~~~~~~v~q~---~~~~-~~   88 (240)
                      |+.+.. .+++|++++|+||||||||||+ +.+++  ..|..+..+....  . .+    ....++.++.   ...+ ..
T Consensus         9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~-~~l~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (220)
T 2cvh_A            9 LDSLLGGGFAPGVLTQVYGPYASGKTTLA-LQTGL--LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTP   85 (220)
T ss_dssp             HHHHTTSSBCTTSEEEEECSTTSSHHHHH-HHHHH--HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECC
T ss_pred             HHHhhcCCCcCCEEEEEECCCCCCHHHHH-HHHHH--HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEec
Confidence            445544 7999999999999999999999 88877  3344444433211  0 00    0000110000   0000 00


Q ss_pred             eecCcchhHHHhhchhhhc-cCcEEEEcCccCh-----------H---HHHHHHHHHHhcCCCEEEEEecChhhhh----
Q 026304           89 WALPELTSFRQKLGDDAYA-KLDVIGIDEAQFF-----------E---DLYEFCCNAADHDGKTVVVAGLDGDYLR----  149 (240)
Q Consensus        89 ~~~~~~~~~~~~~~~~l~~-~p~lllLDEP~~~-----------~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~----  149 (240)
                      ....+....... ...++. +|++|++|||++.           .   ++++.|++++++.+.+||+++|......    
T Consensus        86 ~~~~~~~~~~~~-~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~  164 (220)
T 2cvh_A           86 SDFKEQRRVIGS-LKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT  164 (220)
T ss_dssp             TTTSHHHHHHHH-HHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred             CCHHHHHHHHHH-HHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence            001110111111 112344 5999999999762           2   2455577777656899999999876321    


Q ss_pred             cccchHHHHHhhccceeeecc
Q 026304          150 RSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       150 ~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .+.. ...+..+||++++|+.
T Consensus       165 ~p~~-~~~~~~~~d~vi~l~~  184 (220)
T 2cvh_A          165 KPVA-EQTLGYRCKDILRLDK  184 (220)
T ss_dssp             CSCC-CHHHHHTSSEEEEEEE
T ss_pred             ccCC-CcceeecCcEEEEEEE
Confidence            0111 1134789999999986

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.43  E-value=1.9e-15  Score=131.86  Aligned_cols=52  Identities=12%  Similarity=0.071  Sum_probs=47.0

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEE
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIA   63 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~   63 (240)
                      +|+++||++.|    |+++||+|++|++++|+||||||||||+ ++|+|+. .|.-+.
T Consensus       101 ~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl-~lL~gl~-~G~I~~  156 (305)
T 2v9p_A          101 FFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLC-NSLIHFL-GGSVLS  156 (305)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHH-HHHHHHH-TCEEEC
T ss_pred             eEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHH-HHHhhhc-CceEEE
Confidence            58899999998    8999999999999999999999999999 9999987 665443

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.43  E-value=8.2e-14  Score=117.37  Aligned_cols=34  Identities=15%  Similarity=0.007  Sum_probs=25.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |+++||++++|++++|+||||||||||+ ++|+|+
T Consensus        15 l~~isl~i~~g~iigI~G~~GsGKSTl~-k~L~~~   48 (245)
T 2jeo_A           15 TENLYFQSMRPFLIGVSGGTASGKSTVC-EKIMEL   48 (245)
T ss_dssp             --------CCSEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             ecceeccCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence            8999999999999999999999999999 999885

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.42  E-value=5.4e-14  Score=124.84  Aligned_cols=132  Identities=11%  Similarity=0.046  Sum_probs=73.1

Q ss_pred             cceeEee--ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----C---CceEEeeccchhcccCCCeEEEccC
Q 026304           14 NQVNSGR--DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----N---GRNIAMIKSSKDTRYAIDSVVTHDG   83 (240)
Q Consensus        14 ~~ls~~~--l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~---g~~i~~~~~~~~~~~~~~~~v~q~~   83 (240)
                      ..++.++  |+.+ ++.+++|++++|+||||||||||+ +.+++...    .   |..+..+......+....++++|..
T Consensus       111 ~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~-~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~  189 (349)
T 1pzn_A          111 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA-HTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNR  189 (349)
T ss_dssp             CEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTT
T ss_pred             CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH-HHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHc
Confidence            3445555  5655 689999999999999999999999 88887531    1   1232222211100000012233322


Q ss_pred             ceecceecCcch------------hHHHhhchhhh-------ccCcEEEEcCccCh------------------HHHHHH
Q 026304           84 AKLPCWALPELT------------SFRQKLGDDAY-------AKLDVIGIDEAQFF------------------EDLYEF  126 (240)
Q Consensus        84 ~~~~~~~~~~~~------------~~~~~~~~~l~-------~~p~lllLDEP~~~------------------~~i~~~  126 (240)
                      .++.. ++.++.            .....+ ..++       .+|++|++|||++.                  .+++..
T Consensus       190 ~~~~~-~v~~ni~~~~~~~~~~~~~~l~~~-~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~  267 (349)
T 1pzn_A          190 GLDPD-EVLKHIYVARAFNSNHQMLLVQQA-EDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLAD  267 (349)
T ss_dssp             TCCHH-HHGGGEEEEECCSHHHHHHHHHHH-HHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHH
T ss_pred             CCCHH-HHhhCEEEEecCChHHHHHHHHHH-HHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHH
Confidence            22111 111110            111111 1223       58999999999772                  134455


Q ss_pred             HHHHHhcCCCEEEEEecChhhh
Q 026304          127 CCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       127 l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      |++++++.++|||+++|+....
T Consensus       268 L~~la~~~~~tvii~~h~~~~~  289 (349)
T 1pzn_A          268 LHRLANLYDIAVFVTNQVQARP  289 (349)
T ss_dssp             HHHHHHHTTCEEEEEEECC---
T ss_pred             HHHHHHHcCcEEEEEccccccc
Confidence            5666665799999999998765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.42  E-value=2.9e-14  Score=127.18  Aligned_cols=129  Identities=14%  Similarity=0.035  Sum_probs=81.6

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhc---ccCCCeEEE-ccCce--ecceecCcc
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDT---RYAIDSVVT-HDGAK--LPCWALPEL   94 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~---~~~~~~~v~-q~~~~--~~~~~~~~~   94 (240)
                      +++||.+++|++++|+||||||||||+ ++|.|+.- ....+..-......   .....++++ |+...  +...+..++
T Consensus       166 ~~l~~~i~~G~~i~ivG~sGsGKSTll-~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~  244 (361)
T 2gza_A          166 SFLRRAVQLERVIVVAGETGSGKTTLM-KALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATL  244 (361)
T ss_dssp             HHHHHHHHTTCCEEEEESSSSCHHHHH-HHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHH
T ss_pred             HHHHHHHhcCCEEEEECCCCCCHHHHH-HHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHH
Confidence            789999999999999999999999999 99999732 22233222111100   111235676 54432  122333333


Q ss_pred             hhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304           95 TSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus        95 ~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +.      ..+..+|+.+++|||... +..+++..+.. ...|++.++|+.+ +          ...++|+..+..
T Consensus       245 i~------~~l~~~pd~~l~~e~r~~-~~~~~l~~l~~-g~~~~l~t~H~~~-~----------~~~~~Rl~~l~~  301 (361)
T 2gza_A          245 LR------SCLRMKPTRILLAELRGG-EAYDFINVAAS-GHGGSITSCHAGS-C----------ELTFERLALMVL  301 (361)
T ss_dssp             HH------HHTTSCCSEEEESCCCST-HHHHHHHHHHT-TCCSCEEEEECSS-H----------HHHHHHHHHHHT
T ss_pred             HH------HHHhcCCCEEEEcCchHH-HHHHHHHHHhc-CCCeEEEEECCCC-H----------HHHHHHHHHHHh
Confidence            22      223468999999999763 45677777754 3457899999976 5          577788777655

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.41  E-value=7.7e-15  Score=128.45  Aligned_cols=46  Identities=20%  Similarity=0.143  Sum_probs=40.1

Q ss_pred             eEEEcceeEee---ecCCCCc-----------------------ccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           10 AVTTNQVNSGR---DRVGLPH-----------------------RNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        10 ~l~~~~ls~~~---l~~vsl~-----------------------i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      +|++++|++.|   ++++++.                       +++|++++|+||||||||||+ ++|.|+.
T Consensus        43 ~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~-~~L~gll  114 (312)
T 3aez_A           43 QIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTA-RVLQALL  114 (312)
T ss_dssp             CCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred             eEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHH-HHHHhhc
Confidence            68999999999   5555543                       899999999999999999999 9999974

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.40  E-value=1.5e-13  Score=111.99  Aligned_cols=114  Identities=12%  Similarity=0.011  Sum_probs=61.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch-hcccCCCeEEEccCce----ecce-----------ecCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK-DTRYAIDSVVTHDGAK----LPCW-----------ALPE   93 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~-~~~~~~~~~v~q~~~~----~~~~-----------~~~~   93 (240)
                      |++++|+||||||||||+ ++|+|+. ..|..+....... .......++++|+..-    +...           .+..
T Consensus         1 G~~i~i~G~nG~GKTTll-~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~   79 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLI-HKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQ   79 (189)
T ss_dssp             CCCEEEESCCSSCHHHHH-HHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSS
T ss_pred             CCEEEEECCCCChHHHHH-HHHHhhcccCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccce
Confidence            789999999999999999 9999863 2231111111110 1111123677775210    0000           0010


Q ss_pred             ---chhHHHhh-----ch---hhhccCcEEEEcC--ccC--hHHHHHHHHHHHhcCCCEEEE----EecChh
Q 026304           94 ---LTSFRQKL-----GD---DAYAKLDVIGIDE--AQF--FEDLYEFCCNAADHDGKTVVV----AGLDGD  146 (240)
Q Consensus        94 ---~~~~~~~~-----~~---~l~~~p~lllLDE--P~~--~~~i~~~l~~l~~~~g~tvi~----vtHd~~  146 (240)
                         ...-..+.     ..   .+..+|++||+||  |+.  -..+++.|.++.+ ...++|+    ++|+.+
T Consensus        80 ~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-~~~~~ilgti~vsh~~~  150 (189)
T 2i3b_A           80 YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-TPGTIILGTIPVPKGKP  150 (189)
T ss_dssp             SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-CSSCCEEEECCCCCSSC
T ss_pred             EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-CCCcEEEEEeecCCCCc
Confidence               01111111     11   1367899999999  554  2357888888876 3445553    349863

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.40  E-value=4.7e-14  Score=117.47  Aligned_cols=117  Identities=9%  Similarity=0.011  Sum_probs=67.6

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh----CC-ceEEeeccchhcccCCCeEEEccCceecceec----Ccch
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD----NG-RNIAMIKSSKDTRYAIDSVVTHDGAKLPCWAL----PELT   95 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~----~g-~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~----~~~~   95 (240)
                      .-+.++|++++|+||||||||||+ ++|.|+..    .| ..+...++....+ ...+|+||....|+.+++    .++.
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLl-k~L~g~~~p~~~~g~v~~ttr~~~~~e~-~gi~y~fq~~~~f~~~~~~~~f~E~~   87 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLI-QALLKTQPLYDTQVSVSHTTRQPRPGEV-HGEHYFFVNHDEFKEMISRDAFLEHA   87 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHH-HHHHHHSCTTTEEECCCEECSCCCTTCC-BTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred             cccCCCCcEEEEECCCCCCHHHHH-HHHhccCCCCceEEEEEecCCCCCcccc-cCceEEECCHHHHHHHHhcCHHHHHH
Confidence            346789999999999999999999 99999632    12 1111111111111 124788987666655444    2222


Q ss_pred             hHHHhh-------chhhhccCcEEEEc-CccChHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           96 SFRQKL-------GDDAYAKLDVIGID-EAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        96 ~~~~~~-------~~~l~~~p~lllLD-EP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      .+...+       -...+..++++||| .|....++.+.+    . .+.+|++++|+++.+
T Consensus        88 ~~~~~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l----~-~~~tI~i~th~~~~l  143 (219)
T 1s96_A           88 EVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKM----P-HARSIFILPPSKIEL  143 (219)
T ss_dssp             EETTEEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHC----T-TCEEEEEECSSHHHH
T ss_pred             HHHhccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHc----c-CCEEEEEECCCHHHH
Confidence            211110       12246678999999 111123343333    3 489999999999887

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.38  E-value=3.1e-13  Score=112.47  Aligned_cols=144  Identities=14%  Similarity=0.082  Sum_probs=71.8

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCch-h------CCceEEeeccch---h----cccCCCeEEEcc---Cc-eec
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES-D------NGRNIAMIKSSK---D----TRYAIDSVVTHD---GA-KLP   87 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~------~g~~i~~~~~~~---~----~~~~~~~~v~q~---~~-~~~   87 (240)
                      --+++|++++|+||||||||||+ +.+++.. .      .+..+..+....   .    .+....++.++.   .. ...
T Consensus        19 ggi~~G~~~~i~G~~GsGKTtl~-~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   97 (243)
T 1n0w_A           19 GGIETGSITEMFGEFRTGKTQIC-HTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYAR   97 (243)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred             CCCcCCeEEEEECCCCCcHHHHH-HHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEe
Confidence            46899999999999999999999 8888731 1      123333322111   0    010011222221   11 111


Q ss_pred             ceecCcchhHHHhhchhh-hccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           88 CWALPELTSFRQKLGDDA-YAKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l-~~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ..+..+.......+...+ ..+|++|++|||++.                  .+++..|.+++++.|+|||+++|.....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~  177 (243)
T 1n0w_A           98 AFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQV  177 (243)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC------
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecC
Confidence            111111111111111111 258999999999751                  1244445566655699999999987665


Q ss_pred             hc--ccc-------hHHHHHhhccceeeecc
Q 026304          149 RR--SFG-------SVLDIIPLADTVTKLTA  170 (240)
Q Consensus       149 ~~--~f~-------~~~~L~~~ad~i~~l~~  170 (240)
                      ..  .|.       ....+..+||.+++|+.
T Consensus       178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~  208 (243)
T 1n0w_A          178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRK  208 (243)
T ss_dssp             -------------------CCTTCEEEEEEE
T ss_pred             CCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence            33  231       11124558999999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.38  E-value=9.2e-13  Score=105.43  Aligned_cols=104  Identities=12%  Similarity=-0.051  Sum_probs=64.2

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhc
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLG  102 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~  102 (240)
                      +|.+++|+.++|+||||+|||||+ +++++..  ..|..+..+........           +.....-.....+.    
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----   95 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLA-VATLKAIYEKKGIRGYFFDTKDLIFR-----------LKHLMDEGKDTKFL----   95 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHH-HHHHHHHHHHSCCCCCEEEHHHHHHH-----------HHHHHHHTCCSHHH----
T ss_pred             hccccCCCEEEEECCCCCCHHHHH-HHHHHHHHHHcCCeEEEEEHHHHHHH-----------HHHHhcCchHHHHH----
Confidence            567888999999999999999999 9998864  23433222211100000           00000000000111    


Q ss_pred             hhhhccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304          103 DDAYAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                       ..+.+|++|+||||+.       +..+.+++.+..+ .|+++|++||...
T Consensus        96 -~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~  144 (180)
T 3ec2_A           96 -KTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSL  144 (180)
T ss_dssp             -HHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred             -HHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCCh
Confidence             1246899999999974       2356677777665 6899999999764

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.37  E-value=4.3e-14  Score=128.20  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=50.4

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEE--EEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccC
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEI--HVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDG   83 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~   83 (240)
                      .+++++ +++|    ++++||++++|++  ++|+||||||||||+ ++|.|+.+.|.++....+... +. ..++++|..
T Consensus        16 ~l~~~~-~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLl-n~L~G~~l~g~~~~~~~~~~~-~~-~i~~v~Q~~   91 (427)
T 2qag_B           16 TVPLAG-HVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLM-DTLFNTKFEGEPATHTQPGVQ-LQ-SNTYDLQES   91 (427)
T ss_dssp             -CCCCC-CC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHH-HHHHTSCC-------CCSSCE-EE-EEEEEEEC-
T ss_pred             eEEEee-EEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHH-HHHhCccccCCcCCCCCccce-Ee-eEEEEeecC
Confidence            466666 7777    7899999999999  999999999999999 999999777766543322211 11 247788876


Q ss_pred             ceecceecC
Q 026304           84 AKLPCWALP   92 (240)
Q Consensus        84 ~~~~~~~~~   92 (240)
                      .+++.+++.
T Consensus        92 ~l~~~ltv~  100 (427)
T 2qag_B           92 NVRLKLTIV  100 (427)
T ss_dssp             -CEEEEEEE
T ss_pred             ccccccchh
Confidence            655544443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.36  E-value=1.4e-12  Score=102.09  Aligned_cols=84  Identities=18%  Similarity=0.223  Sum_probs=58.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      +|+.++|+||||+|||||+ +++++... .|.++..              +..... ...               .++.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~-~~i~~~~~~~g~~~~~--------------~~~~~~-~~~---------------~~~~~   83 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLL-QAWVAQALEAGKNAAY--------------IDAASM-PLT---------------DAAFE   83 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHH-HHHHHHHHTTTCCEEE--------------EETTTS-CCC---------------GGGGG
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCcEEE--------------EcHHHh-hHH---------------HHHhC
Confidence            8999999999999999999 99998643 2322222              111110 000               12468


Q ss_pred             CcEEEEcCccC-----hHHHHHHHHHHHhcCCCE-EEEEecCh
Q 026304          109 LDVIGIDEAQF-----FEDLYEFCCNAADHDGKT-VVVAGLDG  145 (240)
Q Consensus       109 p~lllLDEP~~-----~~~i~~~l~~l~~~~g~t-vi~vtHd~  145 (240)
                      |++|++|||+.     ++.+++++.++.+ .|++ +|++||..
T Consensus        84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~-~g~~~iiits~~~  125 (149)
T 2kjq_A           84 AEYLAVDQVEKLGNEEQALLFSIFNRFRN-SGKGFLLLGSEYT  125 (149)
T ss_dssp             CSEEEEESTTCCCSHHHHHHHHHHHHHHH-HTCCEEEEEESSC
T ss_pred             CCEEEEeCccccChHHHHHHHHHHHHHHH-cCCcEEEEECCCC
Confidence            99999999977     3467888888776 5777 88888853

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.36  E-value=5.8e-13  Score=116.10  Aligned_cols=115  Identities=13%  Similarity=0.067  Sum_probs=74.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch--------h----cccCCCeEEEccCceecceecCcchh
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK--------D----TRYAIDSVVTHDGAKLPCWALPELTS   96 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~--------~----~~~~~~~~v~q~~~~~~~~~~~~~~~   96 (240)
                      +|++++|+||||||||||+ +.|+|+. ..+..+.......        .    .+. ..++++|.....+..++.++..
T Consensus       101 ~g~vi~lvG~nGsGKTTll-~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~-~i~~v~q~~~~~p~~~v~~~v~  178 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTI-AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRL-SIPVIQGPEGTDSAALAYDAVQ  178 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHH-HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHH-TCCEECCCTTCCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHH-HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHHH
Confidence            6999999999999999999 9999973 2333333222110        0    112 2478898776655554444333


Q ss_pred             HHHh------------------------------hchhhhccCc--EEEEcCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 026304           97 FRQK------------------------------LGDDAYAKLD--VIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus        97 ~~~~------------------------------~~~~l~~~p~--lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      ....                              +...++.+|+  ++.|| |++..++++.++++.+..|.|+|++||+
T Consensus       179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~~~~~~~~~~~~t~iivTh~  257 (304)
T 1rj9_A          179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLEQAKKFHEAVGLTGVIVTKL  257 (304)
T ss_dssp             HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHHHHHHHHHHHCCSEEEEECT
T ss_pred             HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence            2110                              1122456798  77888 5555567778888776458999999999


Q ss_pred             hhh
Q 026304          145 GDY  147 (240)
Q Consensus       145 ~~~  147 (240)
                      .+.
T Consensus       258 d~~  260 (304)
T 1rj9_A          258 DGT  260 (304)
T ss_dssp             TSS
T ss_pred             ccc
Confidence            543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.36  E-value=2.7e-13  Score=123.04  Aligned_cols=128  Identities=12%  Similarity=0.063  Sum_probs=70.7

Q ss_pred             ceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh--CC---ceEEeeccchhcccCCCeE
Q 026304            9 AAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD--NG---RNIAMIKSSKDTRYAIDSV   78 (240)
Q Consensus         9 ~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g---~~i~~~~~~~~~~~~~~~~   78 (240)
                      .+|+++||++.|     ++++||+|      +|+||||||||||+ ++|.|...  .|   ..+.. .+..  .....++
T Consensus        10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLl-n~L~g~~~~~~~~~~~~~~~-~~t~--~~~~i~~   79 (418)
T 2qag_C           10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLI-NSLFLTDLYSPEYPGPSHRI-KKTV--QVEQSKV   79 (418)
T ss_dssp             -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHH-HHHTTCCCCCCCCCSCC------CC--EEEEEEC
T ss_pred             CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHH-HHHhCCCCCCCCCCCcccCC-ccce--eeeeEEE
Confidence            479999999998     89999997      99999999999999 99999743  22   11111 0100  1111245


Q ss_pred             EEccCceecceecCcchhHHHh---------------------------hchhhhccCc---EEEEcCccC--hHHH-HH
Q 026304           79 VTHDGAKLPCWALPELTSFRQK---------------------------LGDDAYAKLD---VIGIDEAQF--FEDL-YE  125 (240)
Q Consensus        79 v~q~~~~~~~~~~~~~~~~~~~---------------------------~~~~l~~~p~---lllLDEP~~--~~~i-~~  125 (240)
                      ++|...++..+++.++..+...                           +...++.+|+   +|++|||+.  .+.. .+
T Consensus        80 v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~  159 (418)
T 2qag_C           80 LIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE  159 (418)
T ss_dssp             C------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHH
T ss_pred             EEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHH
Confidence            5665555555566554433211                           1123467899   999999973  3322 35


Q ss_pred             HHHHHHhcCCCEEEEEecChhhh
Q 026304          126 FCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       126 ~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      +++++.  .+.+||+|.|-.+.+
T Consensus       160 ~lk~L~--~~v~iIlVinK~Dll  180 (418)
T 2qag_C          160 FMKRLH--EKVNIIPLIAKADTL  180 (418)
T ss_dssp             HHHHHT--TTSEEEEEEESTTSS
T ss_pred             HHHHHh--ccCcEEEEEEcccCc
Confidence            666664  378888888876654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.36  E-value=3.3e-14  Score=126.21  Aligned_cols=46  Identities=17%  Similarity=0.031  Sum_probs=42.6

Q ss_pred             CceEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304            8 PAAVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus         8 ~~~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++++++++++.|      ++++ |+|.+|++++|+||||||||||+ ++|+|+
T Consensus        43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl-~~I~g~   94 (347)
T 2obl_A           43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLL-GMICNG   94 (347)
T ss_dssp             SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHH-HHHhcC
Confidence            3578999999988      7899 99999999999999999999999 999997

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.34  E-value=4.2e-14  Score=112.01  Aligned_cols=83  Identities=17%  Similarity=0.033  Sum_probs=53.7

Q ss_pred             EEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCcee
Q 026304           12 TTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKL   86 (240)
Q Consensus        12 ~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~   86 (240)
                      +.+++++.|     ++++||++++|++++|+||||||||||+ |+|+|+......+..........+....+++|+..++
T Consensus         9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLl-r~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~   87 (158)
T 1htw_A            9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLT-RGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY   87 (158)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHH-HHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred             CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHH-HHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc
Confidence            345666666     7899999999999999999999999999 9999964211112111000000000013678876666


Q ss_pred             cceecCcchh
Q 026304           87 PCWALPELTS   96 (240)
Q Consensus        87 ~~~~~~~~~~   96 (240)
                       .+++.+++.
T Consensus        88 -~ltv~e~l~   96 (158)
T 1htw_A           88 -RLADPEELE   96 (158)
T ss_dssp             -TCSCTTHHH
T ss_pred             -cCCcHHHHH
Confidence             677766553

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.30  E-value=2.6e-12  Score=106.97  Aligned_cols=148  Identities=11%  Similarity=0.004  Sum_probs=80.1

Q ss_pred             ecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEEccC----ce--ec-
Q 026304           21 DRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVTHDG----AK--LP-   87 (240)
Q Consensus        21 l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~q~~----~~--~~-   87 (240)
                      |+.+ ..-+++|++++|+||||||||||+++++.+....|..+..+....     ..+....++.+|..    .+  .. 
T Consensus        12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~   91 (247)
T 2dr3_A           12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYEEKGMFAMVDA   91 (247)
T ss_dssp             HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHHHHTSEEEEEC
T ss_pred             HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCcEEEEec
Confidence            4544 667999999999999999999997466555444444444432211     01111112222210    00  00 


Q ss_pred             ------------ce---ecCcchhHHHhhchhh-hccCcEEEEcCccCh--------HHHHHHHHHHHhcCCCEEEEEec
Q 026304           88 ------------CW---ALPELTSFRQKLGDDA-YAKLDVIGIDEAQFF--------EDLYEFCCNAADHDGKTVVVAGL  143 (240)
Q Consensus        88 ------------~~---~~~~~~~~~~~~~~~l-~~~p~lllLDEP~~~--------~~i~~~l~~l~~~~g~tvi~vtH  143 (240)
                                  ..   ...+...+...+...+ ..+|+++++|+|+..        .+.+..+.+++++.|.+|++++|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h  171 (247)
T 2dr3_A           92 FTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQ  171 (247)
T ss_dssp             STTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             chhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence                        00   0011111122221111 257999999999762        34445555555557999999999


Q ss_pred             ChhhhhcccchHHHHHhhccceeeecc
Q 026304          144 DGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       144 d~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ....... +.. ..+..+||.++.|+.
T Consensus       172 ~~~~~~~-~~~-~~~~~~~D~vi~L~~  196 (247)
T 2dr3_A          172 VSVGERG-FGG-PGVEHGVDGIIRLDL  196 (247)
T ss_dssp             CC----C-CC--CCHHHHSSEEEEEEE
T ss_pred             CCCCccc-ccc-cccceeEEEEEEEEE
Confidence            8765311 111 124678899999976

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.27  E-value=1.3e-11  Score=113.66  Aligned_cols=126  Identities=10%  Similarity=0.003  Sum_probs=77.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch---------hc--ccCCCeEEEccCceecc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK---------DT--RYAIDSVVTHDGAKLPC   88 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~---------~~--~~~~~~~v~q~~~~~~~   88 (240)
                      .+++||++.+|++++|+||||||||||+ ++|+|+. ..+..+.......         ..  +....++++|....++.
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl-~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~  361 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTI-GKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA  361 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHH-HHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence            3689999999999999999999999999 9999973 3444444321110         00  11234788987666655


Q ss_pred             eecCcchhHHHhh-----------------------chh--h-----hccC-cEEEEcCccChHHHHHHHHHHHhcCCCE
Q 026304           89 WALPELTSFRQKL-----------------------GDD--A-----YAKL-DVIGIDEAQFFEDLYEFCCNAADHDGKT  137 (240)
Q Consensus        89 ~~~~~~~~~~~~~-----------------------~~~--l-----~~~p-~lllLDEP~~~~~i~~~l~~l~~~~g~t  137 (240)
                      .++.+++.+...-                       ...  .     ...| ++||...|+.....++.++.+.+..+.|
T Consensus       362 ~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~~~~~it  441 (503)
T 2yhs_A          362 SVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLT  441 (503)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHHhhcCCC
Confidence            5555544433210                       000  0     1235 3554555766445556667766556788


Q ss_pred             EEEEecChhhh
Q 026304          138 VVVAGLDGDYL  148 (240)
Q Consensus       138 vi~vtHd~~~~  148 (240)
                      .+++|| ++..
T Consensus       442 gvIlTK-LD~t  451 (503)
T 2yhs_A          442 GITLTK-LDGT  451 (503)
T ss_dssp             EEEEEC-GGGC
T ss_pred             EEEEEc-CCCc
Confidence            888898 4443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.24  E-value=7.6e-12  Score=107.16  Aligned_cols=44  Identities=11%  Similarity=-0.016  Sum_probs=33.4

Q ss_pred             hhccCcEEEEcCccC--------h---HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          105 AYAKLDVIGIDEAQF--------F---EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       105 l~~~p~lllLDEP~~--------~---~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ++.+|++|++|||++        .   .+++..|++++++.|+|||+++|+....
T Consensus       130 l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          130 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             hcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence            467899999999977        1   4677888888755799999999998765

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.24  E-value=5.7e-12  Score=107.99  Aligned_cols=108  Identities=11%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch--------hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhh---
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES--------DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKL---  101 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~--------~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~---  101 (240)
                      .++|+||||||||||+ ++|.|+.        ++|+++   +..  .+....++++|...+++.+++.++..+....   
T Consensus         4 ~v~lvG~nGaGKSTLl-n~L~g~~~~~~G~i~~~g~~i---~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~   77 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLV-NTLFKSQVSRKASSWNREEKI---PKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE   77 (270)
T ss_dssp             EEEEEESSSSSHHHHH-HHHHHHHC------------C---CCC--CSCCEEEESCC----CCEEEEECCCC--CCSBCT
T ss_pred             EEEEECCCCCCHHHHH-HHHhCCCCCCCCccccCCccc---Ccc--eeeeeeEEEeecCCCcCCceEEechhhhhhcccH
Confidence            4799999999999999 9999973        223322   111  1112247888887777777776654432110   


Q ss_pred             -----------------------chh-----h-hccCcEEEEcCccC-h-HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          102 -----------------------GDD-----A-YAKLDVIGIDEAQF-F-EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       102 -----------------------~~~-----l-~~~p~lllLDEP~~-~-~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                                             +++     + -..+.++++|||+. . ..-.++++.+.+ . .+||++.|..+.+
T Consensus        78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~-~-~~vI~Vi~K~D~l  153 (270)
T 3sop_A           78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK-V-VNIIPVIAKADTM  153 (270)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT-T-SEEEEEETTGGGS
T ss_pred             HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh-c-CcEEEEEeccccC
Confidence                                   010     0 11345899999966 2 123567777776 4 8899998877654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.24  E-value=4.9e-12  Score=110.00  Aligned_cols=127  Identities=10%  Similarity=-0.045  Sum_probs=60.3

Q ss_pred             cceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hh--CCceEEeeccchhcccCCCeEEEccCce
Q 026304           14 NQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SD--NGRNIAMIKSSKDTRYAIDSVVTHDGAK   85 (240)
Q Consensus        14 ~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~--~g~~i~~~~~~~~~~~~~~~~v~q~~~~   85 (240)
                      +||++.|     +++++|+|      +|+||||+|||||+ +.|.|. ..  .|..+...+..........++++|....
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl-~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~   74 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV   74 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHH-HHHHC------------------------CEEEEC---C
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHH-HHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCc
Confidence            3667776     88999988      99999999999999 998885 22  2210000000000111224677776554


Q ss_pred             ecceecCcchhH-------------HH-------h-h----ch--hhhccCc---EEEEcCccC--hH-HHHHHHHHHHh
Q 026304           86 LPCWALPELTSF-------------RQ-------K-L----GD--DAYAKLD---VIGIDEAQF--FE-DLYEFCCNAAD  132 (240)
Q Consensus        86 ~~~~~~~~~~~~-------------~~-------~-~----~~--~l~~~p~---lllLDEP~~--~~-~i~~~l~~l~~  132 (240)
                      ...+++.+...+             ..       . +    ++  ..+..++   +|++|||+.  ++ .-.++++++..
T Consensus        75 ~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~~  154 (301)
T 2qnr_A           75 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHN  154 (301)
T ss_dssp             CEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHTT
T ss_pred             ccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHHh
Confidence            444555443322             11       0 0    00  1123333   999999964  32 12366777765


Q ss_pred             cCCCEEEEEecChhh
Q 026304          133 HDGKTVVVAGLDGDY  147 (240)
Q Consensus       133 ~~g~tvi~vtHd~~~  147 (240)
                      ..+.++++++||+..
T Consensus       155 ~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A          155 KVNIVPVIAKADTLT  169 (301)
T ss_dssp             TSCEEEEECCGGGSC
T ss_pred             cCCEEEEEEeCCCCC
Confidence            457899999999853

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.20  E-value=5.6e-13  Score=109.15  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=24.0

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|++++|+||||||||||+ ++|.|+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~-~~l~~~   29 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLA-QALART   29 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHH-HHHHHH
Confidence            578999999999999999999 999985

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.18  E-value=4e-11  Score=105.53  Aligned_cols=116  Identities=12%  Similarity=0.075  Sum_probs=75.5

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccch------------hcccCCCeEEEccCceecceecCcc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSK------------DTRYAIDSVVTHDGAKLPCWALPEL   94 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~------------~~~~~~~~~v~q~~~~~~~~~~~~~   94 (240)
                      .++|++++|+|||||||||++ +.|+|+ ...+..+.......            ..+.+ ..+++|.....+..++.++
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll-~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g-v~~v~q~~~~~p~~~v~e~  203 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTI-AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG-VKVIKHSYGADPAAVAYDA  203 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT-CEEECCCTTCCHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH-HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC-ceEEeccccCCHHHHHHHH
Confidence            378999999999999999999 999996 23344443322110            11111 2477777666666666555


Q ss_pred             hhHHHh--------------------------hchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304           95 TSFRQK--------------------------LGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus        95 ~~~~~~--------------------------~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                      +.+...                          +...+..++.+++||.++. .++++.++.+.+..+.+++++||.-.
T Consensus       204 l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~~~~~~~~~~it~iilTKlD~  280 (328)
T 3e70_C          204 IQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQARQFNEAVKIDGIILTKLDA  280 (328)
T ss_dssp             HHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHHHHHHHHHSCCCEEEEECGGG
T ss_pred             HHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHHHHHHHHhcCCCEEEEeCcCC
Confidence            443321                          0112345777889997765 46667777777657899999999543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.18  E-value=8.8e-12  Score=112.48  Aligned_cols=144  Identities=12%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHH--cCchh-----CCceEEeeccch-------hcccCCCeEEEcc---Ccee-c
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRI--RSESD-----NGRNIAMIKSSK-------DTRYAIDSVVTHD---GAKL-P   87 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i--~gl~~-----~g~~i~~~~~~~-------~~~~~~~~~v~q~---~~~~-~   87 (240)
                      --|++|+++.|+||||||||||+ +.+  .+...     .+..+..+....       ..+....++.++.   ...+ .
T Consensus       173 GGI~~Gei~~I~G~sGsGKTTLl-~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~  251 (400)
T 3lda_A          173 GGVETGSITELFGEFRTGKSQLC-HTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYAR  251 (400)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred             CCcCCCcEEEEEcCCCCChHHHH-HHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEec
Confidence            46899999999999999999999 744  33321     122222222110       0000011232221   1111 1


Q ss_pred             ceecCcchhHHHhhchh-hhccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           88 CWALPELTSFRQKLGDD-AYAKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ................. ...+|++|++|||++.                  .+++..|++++++.|+|||+++|.....
T Consensus       252 ~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~  331 (400)
T 3lda_A          252 AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQV  331 (400)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccC
Confidence            11111111111111111 1257999999999661                  3467788888876799999999985433


Q ss_pred             hc--ccc-------hHHHHHhhccceeeecc
Q 026304          149 RR--SFG-------SVLDIIPLADTVTKLTA  170 (240)
Q Consensus       149 ~~--~f~-------~~~~L~~~ad~i~~l~~  170 (240)
                      ..  +|.       ....+...+|.++.|+.
T Consensus       332 ~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~  362 (400)
T 3lda_A          332 DGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK  362 (400)
T ss_dssp             ----------------CHHHHHCSEEEEEEE
T ss_pred             CccccccCCCccCCchhHHHHhcceEEEEEe
Confidence            22  332       12345778899998876

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.16  E-value=4.1e-12  Score=113.11  Aligned_cols=144  Identities=9%  Similarity=-0.008  Sum_probs=83.1

Q ss_pred             ecCCCCcccC--cEEEEEEcCCCCcHHHHHHHHHcCchh--C----CceEE---------eeccchhcccCCCeEEEccC
Q 026304           21 DRVGLPHRNS--GEIHVIMGPMFAGKTTALLRRIRSESD--N----GRNIA---------MIKSSKDTRYAIDSVVTHDG   83 (240)
Q Consensus        21 l~~vsl~i~~--Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~----g~~i~---------~~~~~~~~~~~~~~~v~q~~   83 (240)
                      .+.|++++.+  |+.++|+||||||||||+ ++|+|+.-  .    |....         .......   ...++++|..
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLl-k~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~---~~I~~~~q~~  233 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLV-NKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY---PQMALGHQRY  233 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHH-HHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH---HHHHHHHHHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHH-HHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH---HHHHHHHHHH
Confidence            5679999999  999999999999999999 99999621  1    22110         0000000   0012333322


Q ss_pred             ceecceecCcchhH----------HHhh---------chhh-hccCcEEEEcC---ccC------------hHHHHHHHH
Q 026304           84 AKLPCWALPELTSF----------RQKL---------GDDA-YAKLDVIGIDE---AQF------------FEDLYEFCC  128 (240)
Q Consensus        84 ~~~~~~~~~~~~~~----------~~~~---------~~~l-~~~p~lllLDE---P~~------------~~~i~~~l~  128 (240)
                      ..+. .++.+++.+          ....         .... ..+|++++|||   |+.            +..+.+.|.
T Consensus       234 ~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~  312 (365)
T 1lw7_A          234 IDYA-VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLK  312 (365)
T ss_dssp             HHHH-HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHH
T ss_pred             HHHH-HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHH
Confidence            2111 111111100          0000         0111 35899999999   631            346778887


Q ss_pred             HHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecceeeccCCccee
Q 026304          129 NAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTARCELCGKRAFF  181 (240)
Q Consensus       129 ~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~~~~~~g~~~~~  181 (240)
                      ++.++.+.+|++++|. +..          .++++++..+++ +..+++++++
T Consensus       313 ~l~~~~~~~ililde~-~~~----------~r~~~~i~~i~~-~l~~~~~~~~  353 (365)
T 1lw7_A          313 KLLDKYKVPYIEIESP-SYL----------DRYNQVKAVIEK-VLNEEEISEL  353 (365)
T ss_dssp             HHHHGGGCCCEEEECS-SHH----------HHHHHHHHHHHH-HTSCCCCSSC
T ss_pred             HHHHHcCCCEEEeCCC-CHH----------HHHHHHHHHHHH-HhcccchhHh
Confidence            7765458899999976 455          678888877766 2234555443

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.11  E-value=1.3e-10  Score=103.14  Aligned_cols=148  Identities=18%  Similarity=0.093  Sum_probs=80.1

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh---cccCCCeEEEccCceecceecCcchhHHHhhc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD---TRYAIDSVVTHDGAKLPCWALPELTSFRQKLG  102 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~---~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~  102 (240)
                      --+++|+++.|.||+|||||||++.++......|..+..+.....   .+....++.++...+....+..+......   
T Consensus        56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~---  132 (349)
T 2zr9_A           56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIAD---  132 (349)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHH---
T ss_pred             CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHH---
Confidence            368899999999999999999984544444444555544432110   00000122122111111112222222211   


Q ss_pred             hhhh--ccCcEEEEcCccCh---H----------------HHHHHHHHH---HhcCCCEEEEEecChhhhhcccch----
Q 026304          103 DDAY--AKLDVIGIDEAQFF---E----------------DLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGS----  154 (240)
Q Consensus       103 ~~l~--~~p~lllLDEP~~~---~----------------~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~----  154 (240)
                       .++  .+|++|++|||++.   .                .+.+.++++   +++.+++||+++|........|+.    
T Consensus       133 -~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~  211 (349)
T 2zr9_A          133 -MLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETT  211 (349)
T ss_dssp             -HHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CC
T ss_pred             -HHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence             122  35999999999761   1                234455555   244799999999987655554532    


Q ss_pred             --HHHHHhhccceeeecc-eeeccCC
Q 026304          155 --VLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       155 --~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                        ...|..+||.++.++. .....|+
T Consensus       212 ~gg~~l~~~ad~~l~lrr~~~~k~g~  237 (349)
T 2zr9_A          212 TGGKALKFYASVRLDVRRIETLKDGT  237 (349)
T ss_dssp             SSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred             CCchHhhhccceEEEEEEeeeeecCc
Confidence              3356788999888887 5544454

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.10  E-value=1.1e-11  Score=99.68  Aligned_cols=47  Identities=15%  Similarity=0.012  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHHhcCCCEEEEEecC-hhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          120 FEDLYEFCCNAADHDGKTVVVAGLD-GDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       120 ~~~i~~~l~~l~~~~g~tvi~vtHd-~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +.. ++.+..+.. .+.++|.+||. ++.+          .++||+|+  ++ ++..+|+++.
T Consensus       133 ~~~-~~~~~~~~~-~~~~ii~tsh~~~~~~----------e~~~~~i~--~~g~~~~~~~~~~  181 (189)
T 2bdt_A          133 LEL-VEEFESKGI-DERYFYNTSHLQPTNL----------NDIVKNLK--TNPRFIFCMAGDP  181 (189)
T ss_dssp             GHH-HHHHHHTTC-CTTSEEECSSSCGGGH----------HHHHHHHH--HCGGGSCC-----
T ss_pred             HHH-HHHHhhcCC-CccEEEeCCCCChhhH----------HHHHHHHh--hCCcEEEeecCCc
Confidence            344 666666654 57899999998 9999          89999999  66 8888887654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.89  E-value=2.1e-10  Score=92.91  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=25.1

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |+++++|++++|+||||||||||+ ++|+|+
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~-~~L~~~   30 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLV-RALVKA   30 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHH-HHHHhh
Confidence            577889999999999999999999 999986

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.89  E-value=1.9e-09  Score=94.55  Aligned_cols=41  Identities=10%  Similarity=0.028  Sum_probs=29.3

Q ss_pred             hccCcEEEEcCccCh-----HHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQFF-----EDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~~~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ..+|+++++|||++.     ..+.+.+.+..  .+.++|++||+++.+
T Consensus       132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l  177 (354)
T 1sxj_E          132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS--KNIRLIMVCDSMSPI  177 (354)
T ss_dssp             --CCEEEEEECTTSSCHHHHHHHHHHHHHST--TTEEEEEEESCSCSS
T ss_pred             CCCCeEEEEeCccccCHHHHHHHHHHHHhhc--CCCEEEEEeCCHHHH
Confidence            458999999999873     34555555543  368999999998654

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=98.87  E-value=3.1e-09  Score=82.96  Aligned_cols=55  Identities=16%  Similarity=0.144  Sum_probs=46.2

Q ss_pred             hhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          103 DDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      ..++.+|++++||||++      ...+.+.+.++.+ .|.|||++|||++ +          ..+||++++|+
T Consensus        76 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~----------~~~~d~ii~l~  136 (148)
T 1f2t_B           76 LYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE-L----------KDAADHVIRIS  136 (148)
T ss_dssp             HHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG-G----------GGGCSEEEEEE
T ss_pred             HHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH-H----------HHhCCEEEEEE
Confidence            45678999999999988      3468888888876 5899999999984 5          68999999995

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.84  E-value=7.3e-10  Score=92.00  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=22.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc-Cc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR-SE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~-gl   55 (240)
                      .+++||++++|++++|+||||||||||+ ++|. |+
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~-~~L~~~~   51 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVA-NKLLEKQ   51 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHH-HHHHC--
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHH-HHHHhcC
Confidence            6899999999999999999999999999 9999 86

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.83  E-value=1.4e-10  Score=101.05  Aligned_cols=46  Identities=20%  Similarity=0.116  Sum_probs=42.7

Q ss_pred             ceEEEcceeEee---ecCCCCcc-------------------cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304            9 AAVTTNQVNSGR---DRVGLPHR-------------------NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus         9 ~~l~~~~ls~~~---l~~vsl~i-------------------~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+|++++|++.|   ++++++.+                   .+|++++|+||||||||||+ ++|.|+
T Consensus        36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~-~~L~~~  103 (308)
T 1sq5_A           36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTA-RVLQAL  103 (308)
T ss_dssp             TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence            368999999999   88999988                   89999999999999999999 999996

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.82  E-value=1.3e-08  Score=90.34  Aligned_cols=141  Identities=16%  Similarity=0.052  Sum_probs=81.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchh---cccCCCeEEEccCceecceecCcchhHHHhhc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKD---TRYAIDSVVTHDGAKLPCWALPELTSFRQKLG  102 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~---~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~  102 (240)
                      -+++|+++.|.||+|||||||+ ..++.. ...|..+..+.....   .+....++.++...+....++.+.......+.
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLa-l~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~  135 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLA-LHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV  135 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHH-HHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence            6899999999999999999999 666553 334555544432210   01111123333322222223333222222110


Q ss_pred             hhhhccCcEEEEcCccC----------------------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccc------h
Q 026304          103 DDAYAKLDVIGIDEAQF----------------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG------S  154 (240)
Q Consensus       103 ~~l~~~p~lllLDEP~~----------------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~------~  154 (240)
                        ....|+++++|.-+.                      ..+++..|..++++.+++||++.|-....+..|+      .
T Consensus       136 --~~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~G  213 (356)
T 3hr8_A          136 --RSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTG  213 (356)
T ss_dssp             --HTSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTH
T ss_pred             --hhcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCC
Confidence              125799999998633                      0134455667776679999999998555545553      2


Q ss_pred             HHHHHhhccceeeecc
Q 026304          155 VLDIIPLADTVTKLTA  170 (240)
Q Consensus       155 ~~~L~~~ad~i~~l~~  170 (240)
                      -..|..++|-++.+..
T Consensus       214 G~~l~h~~~~rl~l~k  229 (356)
T 3hr8_A          214 GLALKFYATMRMEVRR  229 (356)
T ss_dssp             HHHHHHHCSEEEEEEE
T ss_pred             cchhhhhCcEEEEEEe
Confidence            3335677888888875

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.81  E-value=8.6e-09  Score=95.69  Aligned_cols=114  Identities=14%  Similarity=-0.006  Sum_probs=68.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC-ceEEeeccchhcc--cCCCeEEEccCceecceecCcchhH
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG-RNIAMIKSSKDTR--YAIDSVVTHDGAKLPCWALPELTSF   97 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g-~~i~~~~~~~~~~--~~~~~~v~q~~~~~~~~~~~~~~~~   97 (240)
                      ++++++.+++|+.++|+||||||||||+ ++|+|+.... ..+....+.....  .....+..|...      ..+...+
T Consensus       250 l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~------~~~~~~~  322 (511)
T 2oap_1          250 LAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGM------GEGEIDM  322 (511)
T ss_dssp             HHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCS------SSCCBCH
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeeccc------ccCCcCH
Confidence            5678899999999999999999999999 9999974332 2222222211100  000122222221      1122233


Q ss_pred             HHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecC
Q 026304           98 RQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus        98 ~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      ...+...+-++|+.++++|-...+ ...++..+.  .|..++-+.|-
T Consensus       323 ~~~l~~~LR~~PD~iivgEir~~E-~~~~l~a~~--tGh~~~sT~Ha  366 (511)
T 2oap_1          323 YDLLRAALRQRPDYIIVGEVRGRE-AQTLFQAMS--TGHASYSTLHA  366 (511)
T ss_dssp             HHHHHTTGGGCCSEEEESCCCSTH-HHHHHHHHH--TTCEEEEEEEC
T ss_pred             HHHHHHhhccCCCeEEeCCcCHHH-HHHHHHhhc--CCCCccccccc
Confidence            333334455799999999997754 555665543  47776666674

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.80  E-value=2.8e-09  Score=97.46  Aligned_cols=151  Identities=15%  Similarity=0.094  Sum_probs=85.7

Q ss_pred             ceeEee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hh-CCceEEeeccch-----hccc-C-CCeEEEcc-
Q 026304           15 QVNSGR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SD-NGRNIAMIKSSK-----DTRY-A-IDSVVTHD-   82 (240)
Q Consensus        15 ~ls~~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~-~g~~i~~~~~~~-----~~~~-~-~~~~v~q~-   82 (240)
                      .++.++  |+++..-+++|+++.|.|++|+|||||+ ..+++. .. .|..+..++...     ..|. . ..++-++. 
T Consensus       185 ~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~-l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~l  263 (454)
T 2r6a_A          185 GIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFA-LNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNL  263 (454)
T ss_dssp             SBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHH-HHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHH-HHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHHH
Confidence            344455  7778888999999999999999999999 555543 32 465665544211     0110 0 00110000 


Q ss_pred             --Cc--------------------ee-c---ceecCcchhHHHhhchhh--hccCcEEEEcCccC--------------h
Q 026304           83 --GA--------------------KL-P---CWALPELTSFRQKLGDDA--YAKLDVIGIDEAQF--------------F  120 (240)
Q Consensus        83 --~~--------------------~~-~---~~~~~~~~~~~~~~~~~l--~~~p~lllLDEP~~--------------~  120 (240)
                        +.                    ++ .   .+++.   .+.... ..+  ..+|+++++|+++.              .
T Consensus       264 ~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~---~i~~~~-~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i  339 (454)
T 2r6a_A          264 RTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVS---DIRAKC-RRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEV  339 (454)
T ss_dssp             HTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHH---HHHHHH-HHHHTTTCCCEEEEECGGGSCCSCC----CHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHH---HHHHHH-HHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHH
Confidence              00                    00 0   01111   111111 111  25899999999955              1


Q ss_pred             HHHHHHHHHHHhcCCCEEEEEecChhhhhc---------ccchHHHHHhhccceeeecc
Q 026304          121 EDLYEFCCNAADHDGKTVVVAGLDGDYLRR---------SFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       121 ~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~---------~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .++...|+.++++.+++||+++|--.....         .+-.+..+...||.|+.|+.
T Consensus       340 ~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r  398 (454)
T 2r6a_A          340 SEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYR  398 (454)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEec
Confidence            256677888887679999999992211100         01111235788999999987

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.79  E-value=1.3e-09  Score=100.39  Aligned_cols=33  Identities=15%  Similarity=0.037  Sum_probs=32.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++||++++ ++++|+||||||||||| ++|+|+
T Consensus        20 l~~vsl~i~~-e~~~liG~nGsGKSTLl-~~l~Gl   52 (483)
T 3euj_A           20 FFARTFDFDE-LVTTLSGGNGAGKSTTM-AGFVTA   52 (483)
T ss_dssp             EEEEEEECCS-SEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             ccceEEEEcc-ceEEEECCCCCcHHHHH-HHHhcC
Confidence            9999999999 99999999999999999 999997

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.78  E-value=1.8e-09  Score=87.52  Aligned_cols=44  Identities=20%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      +|+++|+++.|    +++  |.+.+|..++|+|+||||||||+ +.+.|..
T Consensus         3 ~l~~~~~~~~~~~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl-~~l~g~~   50 (210)
T 1pui_A            3 NLNYQQTHFVMSAPDIRH--LPSDTGIEVAFAGRSNAGKSSAL-NTLTNQK   50 (210)
T ss_dssp             --------CEEEESSGGG--SSCSCSEEEEEEECTTSSHHHHH-TTTCCC-
T ss_pred             chhhhhhhheeecCCHhH--CCCCCCcEEEEECCCCCCHHHHH-HHHhCCC
Confidence            58999999998    666  99999999999999999999999 9998864

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.76  E-value=6.5e-09  Score=102.24  Aligned_cols=64  Identities=23%  Similarity=0.242  Sum_probs=54.5

Q ss_pred             hhccCc--EEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304          105 AYAKLD--VIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA  170 (240)
Q Consensus       105 l~~~p~--lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~  170 (240)
                      ++.+|+  +|||||||+      ...++++|+++++ .|.|||+||||++++          . .||+|++|      ++
T Consensus       479 L~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~TvivVtHd~~~~----------~-~aD~ii~lgpgag~~~  546 (916)
T 3pih_A          479 IGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTVIVVEHDEEVI----------R-NADHIIDIGPGGGTNG  546 (916)
T ss_dssp             HHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEEEEECCCHHHH----------H-TCSEEEEEESSSGGGC
T ss_pred             HhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------H-hCCEEEEEcCCcccCC
Confidence            566666  999999988      4579999999986 699999999999887          5 49999999      77


Q ss_pred             -eeeccCCcce
Q 026304          171 -RCELCGKRAF  180 (240)
Q Consensus       171 -~~~~~g~~~~  180 (240)
                       ++++.|+++.
T Consensus       547 G~iv~~G~~~e  557 (916)
T 3pih_A          547 GRVVFQGTVDE  557 (916)
T ss_dssp             SEEEEEECHHH
T ss_pred             CEEEEeechhh
Confidence             8888887754

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.74  E-value=5.3e-10  Score=98.60  Aligned_cols=109  Identities=15%  Similarity=0.071  Sum_probs=67.4

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccch--hc-------ccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSK--DT-------RYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~--~~-------~~~   74 (240)
                      +++++++++.|     ++++||++.+|++++|+||||||||||+ ++|.|+. ..+.++.......  ..       ...
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl-~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~  107 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTI-DALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT  107 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHH-HHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence            57888888887     7899999999999999999999999999 9999863 2333333222111  00       011


Q ss_pred             CCeEEEccCceecceecC-cch-----hHHHhhchhhhccCcEEEEcCccC
Q 026304           75 IDSVVTHDGAKLPCWALP-ELT-----SFRQKLGDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~-~~~-----~~~~~~~~~l~~~p~lllLDEP~~  119 (240)
                      ..++++|+...+...+.. ..+     ..............+++|+|=|-.
T Consensus       108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi  158 (337)
T 2qm8_A          108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGV  158 (337)
T ss_dssp             GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence            236777777666532211 110     000000001135788999998844

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.73  E-value=7.9e-10  Score=93.65  Aligned_cols=46  Identities=22%  Similarity=0.181  Sum_probs=31.7

Q ss_pred             CceEEEcce-eEee------ecCCCCcccC---cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304            8 PAAVTTNQV-NSGR------DRVGLPHRNS---GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus         8 ~~~l~~~~l-s~~~------l~~vsl~i~~---Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++++|+ +++|      |+++||++.+   |++++|+|++||||||+. +.|++
T Consensus        15 ~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~-~~La~   70 (250)
T 3nwj_A           15 SALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVG-KIMAR   70 (250)
T ss_dssp             -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHH-HHHHH
T ss_pred             CCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            358999999 9988      8899999999   999999999999999999 99976

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.70  E-value=1.7e-08  Score=99.26  Aligned_cols=65  Identities=18%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             hhcc--CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304          105 AYAK--LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA  170 (240)
Q Consensus       105 l~~~--p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~  170 (240)
                      +..+  |++|+|||||+      .+.+++.|+++++ .|.|||+|+||++++           ..||+|++|      ++
T Consensus       519 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl~~i-----------~~ADrIi~LgpgaG~~g  586 (972)
T 2r6f_A          519 IGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDEDTM-----------LAADYLIDIGPGAGIHG  586 (972)
T ss_dssp             HTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH-----------HSCSEEEEECSSSGGGC
T ss_pred             HhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHH-----------HhCCEEEEeCCCccCCC
Confidence            4666  59999999988      4579999999986 799999999999887           469999999      56


Q ss_pred             -eeeccCCccee
Q 026304          171 -RCELCGKRAFF  181 (240)
Q Consensus       171 -~~~~~g~~~~~  181 (240)
                       ++++.|+++.+
T Consensus       587 G~iv~~G~~~e~  598 (972)
T 2r6f_A          587 GEVVAAGTPEEV  598 (972)
T ss_dssp             CSEEEEECTTTT
T ss_pred             CEEEEecCHHHH
Confidence             88888877544

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.65  E-value=3.2e-08  Score=96.56  Aligned_cols=65  Identities=23%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             hhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee------cc
Q 026304          105 AYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL------TA  170 (240)
Q Consensus       105 l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l------~~  170 (240)
                      +..+|  .+|+|||||+      ...++++|+++.+ .|.|||+|+||++++           ..||+|++|      ++
T Consensus       394 L~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~-~G~TVIvVeHdl~~l-----------~~aD~ii~lgpgaG~~~  461 (842)
T 2vf7_A          394 LYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKR-GGNSLFVVEHDLDVI-----------RRADWLVDVGPEAGEKG  461 (842)
T ss_dssp             TTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCHHHH-----------TTCSEEEEECSSSGGGC
T ss_pred             HhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEcCCHHHH-----------HhCCEEEEeCCCcccCC
Confidence            57787  5999999988      3578999999987 799999999999866           579999999      56


Q ss_pred             -eeeccCCccee
Q 026304          171 -RCELCGKRAFF  181 (240)
Q Consensus       171 -~~~~~g~~~~~  181 (240)
                       ++++.|+++.+
T Consensus       462 G~iv~~g~~~~~  473 (842)
T 2vf7_A          462 GEILYSGPPEGL  473 (842)
T ss_dssp             CSEEEEECGGGG
T ss_pred             CEEEEecCHHHH
Confidence             78888876543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.64  E-value=1.6e-09  Score=97.45  Aligned_cols=28  Identities=25%  Similarity=0.228  Sum_probs=26.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.+|..++|+|+||||||||+ ++|+|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~-n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFF-RAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHH-HHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence            6788999999999999999999 999984

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.64  E-value=1.1e-08  Score=81.47  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=29.9

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++++++.+| +++|+||||||||||+ ++|.++
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll-~ai~~~   49 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIG-DAILFV   49 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHH-HHHHHH
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHH-HHHHHH
Confidence            8899999999 9999999999999999 999774

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.61  E-value=8.3e-08  Score=86.93  Aligned_cols=123  Identities=20%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDG   83 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~   83 (240)
                      .++++++++.|     |+++ + ..+|++++|+||||||||||| ++|.|+.. ....+........  +...++ .|..
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ed~ie--~~~~~~-~q~~  216 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTVEDPIE--FDIDGI-GQTQ  216 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEEESSCC--SCCSSS-EEEE
T ss_pred             CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEecccch--hccCCc-ceEE
Confidence            45667777665     5666 4 379999999999999999999 99998632 2223332211110  000010 0100


Q ss_pred             ceecceecCcchhHHHhhchhhhccCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304           84 AKLPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                       ....    -...+...+...+-++|+++++.|-.....+.+.+. ... .|..++-+-|..
T Consensus       217 -v~~~----~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~-a~~-tGhlv~~tlh~~  271 (418)
T 1p9r_A          217 -VNPR----VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQ-ASL-TGHLVMSTLHTN  271 (418)
T ss_dssp             -CBGG----GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHH-HHH-TTCEEEEEECCS
T ss_pred             -Eccc----cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHH-HHH-hCCCcccccchh
Confidence             0000    001222222333457999999999644333334443 333 466665555643

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.58  E-value=1.5e-08  Score=87.90  Aligned_cols=56  Identities=18%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCch--------h---CCceEEeeccchhcccCCCeEEEccCc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES--------D---NGRNIAMIKSSKDTRYAIDSVVTHDGA   84 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~--------~---~g~~i~~~~~~~~~~~~~~~~v~q~~~   84 (240)
                      |++.+|++++|+||||||||||+ ++|.|+.        +   .|+++.....  ..+....++++|.+.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll-~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~~~~~g~v~q~p~  230 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLL-NAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDFGGYVVDTPG  230 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHH-HHHSTTCCCC-------------CCCSCC--EEECTTSCEEESSCS
T ss_pred             HHHhcCCeEEEECCCCCcHHHHH-HHhcccccccccceecccCCCCCceeeeE--EEEcCCCCEEEECcC
Confidence            45778999999999999999999 9999972        2   3444332221  112223578998764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.58  E-value=1.5e-07  Score=81.87  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=33.2

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI   65 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~   65 (240)
                      .++++..+|++++|+|||||||||++ +.|+++ ...|..+...
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~-~~LA~~l~~~g~kV~lv  138 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSC-GKLAKMFVDEGKSVVLA  138 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHH-HHHHHHHHhcCCEEEEE
Confidence            46677789999999999999999999 888876 3455555443

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.57  E-value=3.8e-09  Score=92.26  Aligned_cols=24  Identities=42%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =++++|+|+||||||||+ +.|.|+
T Consensus         4 i~v~~i~G~~GaGKTTll-~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLL-RHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHH-HHHHHS
T ss_pred             ccEEEEEecCCCCHHHHH-HHHHhh
Confidence            368999999999999999 999875

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.56  E-value=3.1e-08  Score=79.16  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=25.9

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+++|++++|+||||||||||+ ++|+|.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~-~~La~~   32 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIA-EALANL   32 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHH-HHHHTC
T ss_pred             CCCCCeEEEEECCCCCCHHHHH-HHHHhc
Confidence            5789999999999999999999 999986

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.53  E-value=4.5e-08  Score=84.77  Aligned_cols=127  Identities=17%  Similarity=0.118  Sum_probs=66.9

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchh--CCceEEeeccchhcccCCC---eEEEccCceecceecCcchhHHHhhch
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESD--NGRNIAMIKSSKDTRYAID---SVVTHDGAKLPCWALPELTSFRQKLGD  103 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g~~i~~~~~~~~~~~~~~---~~v~q~~~~~~~~~~~~~~~~~~~~~~  103 (240)
                      .+|++++++|||||||||++ ..|++...  .|+.+........ +....   ........ .+.........+...+. 
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~-~~LA~~l~~~~G~~V~lv~~D~~-r~~a~eqL~~~~~~~g-l~~~~~~~~~~l~~al~-  178 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTL-AKLAAISMLEKHKKIAFITTDTY-RIAAVEQLKTYAELLQ-APLEVCYTKEEFQQAKE-  178 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHH-HHHHHHHHHTTCCCEEEEECCCS-STTHHHHHHHHHTTTT-CCCCBCSSHHHHHHHHH-
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHHHHHHhcCCEEEEEecCcc-cchHHHHHHHHHHhcC-CCeEecCCHHHHHHHHH-
Confidence            47999999999999999999 88888642  5766655432210 00000   00000000 00000011111221121 


Q ss_pred             hhhccCcEEEEcCccC---hHHHHHHHHHHHh---cCCCEEEE-EecChhhhhcccchHHHHHhhccceeeecc
Q 026304          104 DAYAKLDVIGIDEAQF---FEDLYEFCCNAAD---HDGKTVVV-AGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~---~~~i~~~l~~l~~---~~g~tvi~-vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                       .+.+|+++|+|.|-.   ....+..+.++..   ..+.++++ ++|..+.+          .++++++..+..
T Consensus       179 -~~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~----------~~~~~~~~~l~~  241 (296)
T 2px0_A          179 -LFSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDM----------KHIVKRFSSVPV  241 (296)
T ss_dssp             -HGGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHH----------HHHTTTTSSSCC
T ss_pred             -HhcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHH----------HHHHHHHhcCCC
Confidence             247999999997733   1233333444432   12334444 48988877          777877765544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.50  E-value=3.9e-08  Score=80.26  Aligned_cols=28  Identities=14%  Similarity=0.186  Sum_probs=26.0

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .++|++++|+||||||||||+ ++|+|+.
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~-~~l~~~~   46 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLS-NPLAAAL   46 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHH-HHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence            578999999999999999999 9999964

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.49  E-value=1.6e-07  Score=86.32  Aligned_cols=108  Identities=19%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHh
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      ++++++.+++|  +.|+||+|+|||||+ +.+++..  +.+...++......            .+..   .........
T Consensus        41 ~~~~g~~~p~g--vLL~GppGtGKT~La-raia~~~--~~~f~~is~~~~~~------------~~~g---~~~~~~r~l  100 (476)
T 2ce7_A           41 FNRIGARMPKG--ILLVGPPGTGKTLLA-RAVAGEA--NVPFFHISGSDFVE------------LFVG---VGAARVRDL  100 (476)
T ss_dssp             HHTTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHH--TCCEEEEEGGGTTT------------CCTT---HHHHHHHHH
T ss_pred             HhhcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHc--CCCeeeCCHHHHHH------------HHhc---ccHHHHHHH
Confidence            45778888888  889999999999999 9998732  22222221110000            0000   000111222


Q ss_pred             hchhhhccCcEEEEcCccCh----------------HHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304          101 LGDDAYAKLDVIGIDEAQFF----------------EDLYEFCCNAA---DHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~----------------~~i~~~l~~l~---~~~g~tvi~vtHd~~~~  148 (240)
                      +.......|.+|++||+...                ..+.+++..+-   ...+..||.+||+++.+
T Consensus       101 f~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L  167 (476)
T 2ce7_A          101 FAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL  167 (476)
T ss_dssp             HHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred             HHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence            22333468999999999541                12334444442   22478899999998654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.48  E-value=3.7e-07  Score=79.83  Aligned_cols=43  Identities=21%  Similarity=0.196  Sum_probs=35.2

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI   65 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~   65 (240)
                      ++++|++.+|++++++||||+||||++ ..|++. ...|.++...
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~-~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSL-AKMANYYAELGYKVLIA  139 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEE
Confidence            689999999999999999999999999 888875 3345555443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.47  E-value=3.6e-08  Score=80.10  Aligned_cols=27  Identities=33%  Similarity=0.425  Sum_probs=22.5

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++|++++|+||||||||||+ ++|.|+.
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl-~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLL-KKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHH-HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHH-HHHHhhC
Confidence            57999999999999999999 9999863

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.44  E-value=6.9e-08  Score=77.95  Aligned_cols=30  Identities=30%  Similarity=0.410  Sum_probs=25.4

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      +++++|++++|+|||||||||++ ++|.+..
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~-~~L~~~~   30 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVR-KRIFEDP   30 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHH-HHHHHCT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHH-HHHHHhh
Confidence            46889999999999999999999 9998864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.44  E-value=2.9e-07  Score=81.17  Aligned_cols=144  Identities=13%  Similarity=0.054  Sum_probs=71.2

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hh------CCceEEeeccchh---c----ccCCCeEEEc---cCce-ec
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SD------NGRNIAMIKSSKD---T----RYAIDSVVTH---DGAK-LP   87 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~------~g~~i~~~~~~~~---~----~~~~~~~v~q---~~~~-~~   87 (240)
                      --+++|+++.|.||+|||||||+ ..++.. ..      .+..+..+.....   .    +....++-++   +... ..
T Consensus       117 GGl~~G~i~~I~G~~GsGKTtla-~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~  195 (343)
T 1v5w_A          117 GGIESMAITEAFGEFRTGKTQLS-HTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYAR  195 (343)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHH-HHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred             CCCCCCeEEEEECCCCCCHHHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEee
Confidence            36899999999999999999999 555432 11      2334443322110   0    0000011010   0000 11


Q ss_pred             ceecCcchhHHHhhchhh-h--ccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChh
Q 026304           88 CWALPELTSFRQKLGDDA-Y--AKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l-~--~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                      ..+..+...+...+...+ -  .++++|++|+.+..                  .+++..|+.++++.+.+||+++|...
T Consensus       196 ~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~  275 (343)
T 1v5w_A          196 AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA  275 (343)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence            112222222221111111 1  57999999999651                  12344456666667999999999776


Q ss_pred             hhhc--ccc-h----H--HHHHhhccceeeecc
Q 026304          147 YLRR--SFG-S----V--LDIIPLADTVTKLTA  170 (240)
Q Consensus       147 ~~~~--~f~-~----~--~~L~~~ad~i~~l~~  170 (240)
                      ....  .|. +    +  ..+...+|-++.|+.
T Consensus       276 ~~~~~~~~~g~~~~~~gg~~i~~~ad~~l~l~r  308 (343)
T 1v5w_A          276 DPGATMTFQADPKKPIGGHILAHASTTRISLRK  308 (343)
T ss_dssp             -----------------CCTTTTSSSEEEEEEE
T ss_pred             cCCCccccCCCCCcCCchHHHHHhCCEEEEEEE
Confidence            5433  341 1    1  124566777777764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=7.1e-08  Score=78.10  Aligned_cols=33  Identities=24%  Similarity=0.050  Sum_probs=22.9

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+||++++|++++|+||+||||||+. +.|++
T Consensus        15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~-~~La~   47 (199)
T 3vaa_A           15 TENLYFQSNAMVRIFLTGYMGAGKTTLG-KAFAR   47 (199)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CCceeEecCCCCEEEEEcCCCCCHHHHH-HHHHH
Confidence            8899999999999999999999999999 98875

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.40  E-value=6.9e-08  Score=84.01  Aligned_cols=29  Identities=24%  Similarity=0.244  Sum_probs=27.1

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++.+|++++|+||||||||||+ ++|.|.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLl-n~L~g~  196 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLL-NAISPE  196 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHH-HHHCC-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHH-HHhccc
Confidence            78899999999999999999999 999996

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.38  E-value=7e-07  Score=79.20  Aligned_cols=145  Identities=17%  Similarity=0.133  Sum_probs=73.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch------hcccCCCeEEEccCceecceecCcchhHHHh
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK------DTRYAIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~------~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      -+++|+++.|.||+|+|||||.+.++......|..+..+....      ..+.+..   ...-.+....+..+.......
T Consensus        59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~---~~~l~i~~~~~~e~~~~~~~~  135 (356)
T 1u94_A           59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD---IDNLLCSQPDTGEQALEICDA  135 (356)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCC---GGGCEEECCSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCC---hhheeeeCCCCHHHHHHHHHH
Confidence            4889999999999999999998454444444455555443211      0111110   000000111111111111111


Q ss_pred             hchhhhccCcEEEEcCccCh---H----------------HHHHHHHHH---HhcCCCEEEEEecChhhhhcccchH---
Q 026304          101 LGDDAYAKLDVIGIDEAQFF---E----------------DLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGSV---  155 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~---~----------------~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~~---  155 (240)
                      +.  .-.+++++++|.++..   .                .+.+.++++   +++.+++||++.|-.......|+..   
T Consensus       136 l~--~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~  213 (356)
T 1u94_A          136 LA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT  213 (356)
T ss_dssp             HH--HHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------C
T ss_pred             HH--hccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCccc
Confidence            10  1257999999999651   1                123344444   4457999999999776665555431   


Q ss_pred             ---HHHHhhccceeeecc-eeeccC
Q 026304          156 ---LDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       156 ---~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                         ..|..+||-++.++. .....|
T Consensus       214 ~gG~~l~~~advrl~l~r~~~~k~g  238 (356)
T 1u94_A          214 TGGNALKFYASVRLDIRRIGAVKEG  238 (356)
T ss_dssp             TTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred             CCCcceeeeccEEEEEEEeeeeccC
Confidence               246778998887776 543334

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.38  E-value=9.3e-07  Score=76.35  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=38.3

Q ss_pred             EEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEee
Q 026304           12 TTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMI   65 (240)
Q Consensus        12 ~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~   65 (240)
                      .++++++.|   .++++|+  +|++++++|+||+||||++ +.++++. ..|..+...
T Consensus        78 ~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~-~~la~~~~~~~~~v~l~  132 (295)
T 1ls1_A           78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLV  132 (295)
T ss_dssp             HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEe
Confidence            345666555   3578888  8999999999999999999 8888863 345555443

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.36  E-value=1.2e-07  Score=84.34  Aligned_cols=57  Identities=12%  Similarity=0.052  Sum_probs=44.1

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++||||||++      +..+++.+.++    +.|+|++||+ +            . .||++++|++ ++...|+++
T Consensus       291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~qt~i~~th~-~------------~-~~~~i~~l~~G~i~~~g~~~  352 (359)
T 2o5v_A          291 GEDPVLLLDDFTAELDPHRRQYLLDLAASV----PQAIVTGTEL-A------------P-GAALTLRAQAGRFTPVADEE  352 (359)
T ss_dssp             SSCCEEEECCGGGCCCHHHHHHHHHHHHHS----SEEEEEESSC-C------------T-TCSEEEEEETTEEEECCCTT
T ss_pred             CCCCEEEEeCccccCCHHHHHHHHHHHHhc----CcEEEEEEec-c------------c-cCCEEEEEECCEEEecCCHH
Confidence            6999999999988      33566665544    3699999994 2            2 7999999999 888888876


Q ss_pred             ee
Q 026304          180 FF  181 (240)
Q Consensus       180 ~~  181 (240)
                      .+
T Consensus       353 ~~  354 (359)
T 2o5v_A          353 MQ  354 (359)
T ss_dssp             TS
T ss_pred             HH
Confidence            54

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.35  E-value=6.6e-08  Score=78.39  Aligned_cols=35  Identities=14%  Similarity=-0.008  Sum_probs=30.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .+..++..++|++++|+|||||||||++ +.|++..
T Consensus        15 ~~~~~~~~~~g~~i~l~G~sGsGKSTl~-~~La~~l   49 (200)
T 3uie_A           15 VDRQRLLDQKGCVIWVTGLSGSGKSTLA-CALNQML   49 (200)
T ss_dssp             HHHHHHHTSCCEEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred             HHHHHhcCCCCeEEEEECCCCCCHHHHH-HHHHHHH
Confidence            4556677799999999999999999999 9998853

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.35  E-value=1.9e-07  Score=80.96  Aligned_cols=62  Identities=21%  Similarity=0.181  Sum_probs=38.4

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hh---CCceEEeeccchhcccCCCeEEEccCcee-----cce
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKL-----PCW   89 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~-----~~~   89 (240)
                      +++.+|++++|+||||||||||+ ++|. +        .+   .|+++.....  ..+....++++|.+.+.     +.+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLl-n~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~~g~v~d~pg~~~~~l~~~l  235 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSIL-SRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGKGSFVGDTPGFSKVEATMFV  235 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHH-HHHH-SCCCCCSCC---------CCCCEE--EEEETTTEEEESSCCCSSCCGGGTS
T ss_pred             HhhccCcEEEEECCCCCCHHHHH-HHHH-HhhCcccccccccCCCCCceeeEE--EEEcCCCcEEEECcCcCcCcccccC
Confidence            35668999999999999999999 9998 6        12   3433322111  11222358999887543     455


Q ss_pred             ec
Q 026304           90 AL   91 (240)
Q Consensus        90 ~~   91 (240)
                      ++
T Consensus       236 t~  237 (302)
T 2yv5_A          236 KP  237 (302)
T ss_dssp             CG
T ss_pred             CH
Confidence            66

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.35  E-value=6.5e-07  Score=83.05  Aligned_cols=55  Identities=16%  Similarity=0.026  Sum_probs=47.2

Q ss_pred             hhhhccC--cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          103 DDAYAKL--DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       103 ~~l~~~p--~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ..++.+|  ++||||||++      ...+.++|+++++  |.+||++|||++.+           .+||++++|++
T Consensus       410 ~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~~~-----------~~~d~~~~~~~  472 (517)
T 4ad8_A          410 VSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQIA-----------ARAHHHYKVEK  472 (517)
T ss_dssp             HHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHHHH-----------HHSSEEEEEEC
T ss_pred             HHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHHHH-----------HhCCEEEEEec
Confidence            3468899  9999999988      4578899999875  78999999999876           46999999976

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.32  E-value=1e-08  Score=85.61  Aligned_cols=46  Identities=20%  Similarity=0.056  Sum_probs=37.2

Q ss_pred             CCCceEEEcceeEeeecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304            6 LKPAAVTTNQVNSGRDRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus         6 ~~~~~l~~~~ls~~~l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +....|+++|++..|-.  ++++.+ ++++|+||||||||||| ++|+|+
T Consensus         5 ~k~~~l~l~~~~~~~~~--~~~~~~-~~~~i~GpnGsGKSTll-~~i~g~   50 (227)
T 1qhl_A            5 GKFRSLTLINWNGFFAR--TFDLDE-LVTTLSGGNGAGKSTTM-AAFVTA   50 (227)
T ss_dssp             CEEEEEEEEEETTEEEE--EECHHH-HHHHHHSCCSHHHHHHH-HHHHHH
T ss_pred             ceeeEEEEEeeecccCC--EEEEcC-cEEEEECCCCCCHHHHH-HHHhcc
Confidence            33457889998765533  667766 89999999999999999 999996

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.32  E-value=5.7e-07  Score=78.50  Aligned_cols=144  Identities=8%  Similarity=0.028  Sum_probs=66.0

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcC-chhC------CceEEeeccchh---c----ccCCCeEEEc---cCce-ec
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRS-ESDN------GRNIAMIKSSKD---T----RYAIDSVVTH---DGAK-LP   87 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~g-l~~~------g~~i~~~~~~~~---~----~~~~~~~v~q---~~~~-~~   87 (240)
                      --+++|+++.|.||+|+|||||+ ..++. ....      +..+..+.....   .    +....++-++   +... ..
T Consensus       102 GGl~~G~i~~i~G~~GsGKT~la-~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~  180 (324)
T 2z43_A          102 GGIETRTMTEFFGEFGSGKTQLC-HQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIR  180 (324)
T ss_dssp             TSEETTSEEEEEESTTSSHHHHH-HHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEE
T ss_pred             CCCCCCcEEEEECCCCCCHhHHH-HHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEe
Confidence            46899999999999999999999 44433 2111      334444332110   0    0000011110   0000 01


Q ss_pred             ceecCcchhHHHhhchhh-h-ccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304           88 CWALPELTSFRQKLGDDA-Y-AKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDY  147 (240)
Q Consensus        88 ~~~~~~~~~~~~~~~~~l-~-~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~  147 (240)
                      ..+..+...+...+...+ - .+|++|++|+.++.                  .+++..|+.++++.+.+||++.|-...
T Consensus       181 ~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~  260 (324)
T 2z43_A          181 AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMAR  260 (324)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC---
T ss_pred             CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeec
Confidence            111111111111111111 1 57999999998652                  123444556666679999999997655


Q ss_pred             hhcccch------HHHHHhhccceeeecc
Q 026304          148 LRRSFGS------VLDIIPLADTVTKLTA  170 (240)
Q Consensus       148 ~~~~f~~------~~~L~~~ad~i~~l~~  170 (240)
                      ....|+.      ...+...+|.++.|+.
T Consensus       261 ~~~~~~~~~~~~gg~~l~~~~d~~l~l~r  289 (324)
T 2z43_A          261 PDMFYGDPTVAVGGHTLYHVPGIRIQLKK  289 (324)
T ss_dssp             ---------------------CEEEEEEE
T ss_pred             CCCcCCCCCCCCchHHHHhhCcEEEEEEE
Confidence            5433321      1124566777777764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.31  E-value=2.2e-07  Score=74.09  Aligned_cols=25  Identities=12%  Similarity=0.201  Sum_probs=23.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +|++++|+||||||||||+ +.|.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~-~~L~~~   28 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIK-NTLITK   28 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHhh
Confidence            6899999999999999999 999875

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.29  E-value=1.4e-06  Score=79.34  Aligned_cols=97  Identities=26%  Similarity=0.311  Sum_probs=56.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCchh---CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSESD---NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~---~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      +..+.|.||+|+|||||+ +.|++...   .+..+..++......           .+...+.-.....+.     ....
T Consensus       130 ~~~lll~Gp~G~GKTtLa-~aia~~l~~~~~~~~v~~v~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~  192 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITSEKFLN-----------DLVDSMKEGKLNEFR-----EKYR  192 (440)
T ss_dssp             SCCEEEECSSSSSHHHHH-HHHHHHHHHHCCSSCEEEEEHHHHHH-----------HHHHHHHTTCHHHHH-----HHHT
T ss_pred             CCeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEeeHHHHHH-----------HHHHHHHcccHHHHH-----HHhc
Confidence            467999999999999999 99987431   122222221110000           000000000000111     1134


Q ss_pred             -cCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecCh
Q 026304          108 -KLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus       108 -~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                       +|++|++||+++       +..++..+..+.+ .|..||++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCC
Confidence             899999999965       2357777777766 688999999974

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.27  E-value=2.9e-07  Score=74.50  Aligned_cols=30  Identities=27%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++.++|++++|+|||||||||++ ++|++..
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~-~~L~~~~   53 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIA-HGVADET   53 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHH-HHHHHhh
Confidence            55678999999999999999999 9998753

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.24  E-value=4.9e-07  Score=74.93  Aligned_cols=34  Identities=21%  Similarity=0.148  Sum_probs=29.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.+-+...++|++++|.|+|||||||++ ++|.++
T Consensus        10 ~~~~~~~~~~g~~i~i~G~~GsGKSTl~-~~L~~~   43 (230)
T 2vp4_A           10 KGTKYAEGTQPFTVLIEGNIGSGKTTYL-NHFEKY   43 (230)
T ss_dssp             --CCBTTTCCCEEEEEECSTTSCHHHHH-HTTGGG
T ss_pred             hCCccCCCCCceEEEEECCCCCCHHHHH-HHHHhc
Confidence            4456778899999999999999999999 999986

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.21  E-value=1.2e-06  Score=77.05  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=21.8

Q ss_pred             CcE--EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGE--IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge--~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.  .+.|.||+|+|||||+ +.+.+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~-~~l~~~   67 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTL-RKLWEL   67 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence            446  8999999999999999 988764

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.20  E-value=3.5e-06  Score=75.00  Aligned_cols=139  Identities=16%  Similarity=0.119  Sum_probs=73.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh------cccCCCeEEEccCceecceecCcchhHHHh
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD------TRYAIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~------~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      -+++|+++.|.||.|+|||||++.++......|..+..+.....      .+.+   +-...-.+....+..+.......
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g---~d~~~l~i~~~~~~e~~l~~l~~  146 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALG---VNTDELLVSQPDNGEQALEIMEL  146 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT---CCGGGCEEECCSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcC---CCHHHceeecCCcHHHHHHHHHH
Confidence            58899999999999999999995555544444555555432210      0111   10000000111111111111111


Q ss_pred             hchhhhccCcEEEEcCccCh-------------------HHHHHHHHHH---HhcCCCEEEEEecChhhhhcccch----
Q 026304          101 LGDDAYAKLDVIGIDEAQFF-------------------EDLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGS----  154 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~-------------------~~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~----  154 (240)
                      +.  .-..+++|++|..+..                   ..+.+.++++   +++.+++||++.|-.......|+.    
T Consensus       147 l~--~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~  224 (366)
T 1xp8_A          147 LV--RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPETT  224 (366)
T ss_dssp             HH--TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------------
T ss_pred             HH--hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcccCCcccc
Confidence            10  1247999999998541                   1234455554   456899999999876555444432    


Q ss_pred             --HHHHHhhccceeeecc
Q 026304          155 --VLDIIPLADTVTKLTA  170 (240)
Q Consensus       155 --~~~L~~~ad~i~~l~~  170 (240)
                        ...|..+||-++.|+.
T Consensus       225 ~gg~al~~~a~~rl~L~r  242 (366)
T 1xp8_A          225 TGGRALKFYASVRLDVRK  242 (366)
T ss_dssp             -CHHHHHHHCSEEEEEEE
T ss_pred             CCcchhhheeeEEEEEEe
Confidence              3346778998888876

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.19  E-value=4.1e-07  Score=77.71  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++++.+++|  ++|+||||+|||||+ ++|+|.
T Consensus        36 l~~~~l~~~~G--vlL~Gp~GtGKTtLa-kala~~   67 (274)
T 2x8a_A           36 FKALGLVTPAG--VLLAGPPGCGKTLLA-KAVANE   67 (274)
T ss_dssp             HHHTTCCCCSE--EEEESSTTSCHHHHH-HHHHHH
T ss_pred             HHHcCCCCCCe--EEEECCCCCcHHHHH-HHHHHH
Confidence            67899999999  999999999999999 999985

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.17  E-value=7.1e-07  Score=72.82  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=24.1

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|++++|+||||||||||+ +.|.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~-~~L~~~   31 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVR-EAVFKD   31 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHH-HHHHHS
T ss_pred             CCCcEEEEECcCCCCHHHHH-HHHHhh
Confidence            58999999999999999999 999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.16  E-value=2.8e-07  Score=82.33  Aligned_cols=37  Identities=19%  Similarity=0.159  Sum_probs=33.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG   59 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g   59 (240)
                      ++++++.+++|++++|+||||||||||+ ++|+|. ..|
T Consensus       159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~-~~l~~~-~~g  195 (377)
T 1svm_A          159 LKCMVYNIPKKRYWLFKGPIDSGKTTLA-AALLEL-CGG  195 (377)
T ss_dssp             HHHHHHCCTTCCEEEEECSTTSSHHHHH-HHHHHH-HCC
T ss_pred             HHhcccccCCCCEEEEECCCCCCHHHHH-HHHHhh-cCC
Confidence            6788999999999999999999999999 999984 344

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.14  E-value=1.2e-06  Score=68.10  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++.++++.+| +.+|+|||||||||++ .+|.-
T Consensus        14 ~~~~~i~f~~g-~~~I~G~NGsGKStil-~Ai~~   45 (149)
T 1f2t_A           14 HSDTVVEFKEG-INLIIGQNGSGKSSLL-DAILV   45 (149)
T ss_dssp             BSSEEEECCSE-EEEEECCTTSSHHHHH-HHHHH
T ss_pred             CcceEEEcCCC-eEEEECCCCCCHHHHH-HHHHH
Confidence            45556666655 9999999999999999 88764

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.14  E-value=4.8e-07  Score=81.92  Aligned_cols=52  Identities=10%  Similarity=0.149  Sum_probs=42.2

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .+|+++|||||++      +..+.++|+++.. .+.++|++||+....           ..||+++.+..
T Consensus       354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~~~~-----------~~~d~~~~~~~  411 (430)
T 1w1w_A          354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-----------EKSDALVGVYR  411 (430)
T ss_dssp             SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-----------TTCSEEEEEEE
T ss_pred             CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCHHHH-----------HhCCEEEEEEE
Confidence            4799999999988      3467888887764 578999999996554           68999998864

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.12  E-value=5.8e-06  Score=69.18  Aligned_cols=32  Identities=25%  Similarity=0.190  Sum_probs=23.1

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.+++.++.|  +.|+||+|+|||||+ +.+++.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la-~~la~~   68 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLA-KAIAGE   68 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHH-HHHHHH
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHH-HHHHHH
Confidence            34555666666  889999999999999 999874

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.11  E-value=1.2e-06  Score=73.07  Aligned_cols=25  Identities=36%  Similarity=0.329  Sum_probs=23.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc---Cc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR---SE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~---gl   55 (240)
                      ++++++|+||||||||||+ ++|+   |+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~-k~La~~lg~   53 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVC-QRIAQNFGL   53 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHHHHCC
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHHHhCC
Confidence            4789999999999999999 9999   86

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.10  E-value=1.4e-06  Score=76.24  Aligned_cols=26  Identities=23%  Similarity=0.218  Sum_probs=22.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+..+.|.||+|+|||||+ +.+.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~-~~l~~~   68 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVV-KFVLSK   68 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHH-HHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHH-HHHHHH
Confidence            45789999999999999999 888764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.10  E-value=1.3e-06  Score=68.68  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+|++++|+|||||||||++ +.|.+.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~-~~l~~~   31 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVA-SEVAHQ   31 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHH-HHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHH-HHHHHh
Confidence            57999999999999999999 999874

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.10  E-value=9.8e-06  Score=77.42  Aligned_cols=119  Identities=14%  Similarity=0.036  Sum_probs=63.6

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh---------CCceEEeeccchhcccCCCeEEEccC------ceecce
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD---------NGRNIAMIKSSKDTRYAIDSVVTHDG------AKLPCW   89 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~---------~g~~i~~~~~~~~~~~~~~~~v~q~~------~~~~~~   89 (240)
                      |+++++|..++|+|++|+|||||+ +.|.+...         +|..+....+... +.+ ..+.++..      ..+.-+
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl-~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~-~~g-iti~~~~~~~~~~~~~~nli   79 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLT-EALLYKTGAKERRGRVEEGTTTTDYTPEAK-LHR-TTVRTGVAPLLFRGHRVFLL   79 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHH-HHHHHHTTSSSSCCCGGGTCCSSCCSHHHH-HTT-SCCSCEEEEEEETTEEEEEE
T ss_pred             CCccCCCcEEEEECCCCChHHHHH-HHHHHhcCCCCccceecCCcccccCCHHHH-hcC-CeEEecceEEeeCCEEEEEE
Confidence            467889999999999999999999 88875421         2222222211111 111 12222211      111111


Q ss_pred             ecCcchhHHHhh-chhhhccCcEEEEcCccC--hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304           90 ALPELTSFRQKL-GDDAYAKLDVIGIDEAQF--FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus        90 ~~~~~~~~~~~~-~~~l~~~p~lllLDEP~~--~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ...+...+.... ......+.-++++| |+.  ..+..+.++.+.. .+.+++++.|.++..
T Consensus        80 DTpG~~~f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~-~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           80 DAPGYGDFVGEIRGALEAADAALVAVS-AEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             ECCCSGGGHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGC
T ss_pred             eCCCccchHHHHHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHH-ccCCEEEEecCCchh
Confidence            111222222111 11235678899999 654  2234455555554 688999999999876

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.10  E-value=8.7e-07  Score=74.14  Aligned_cols=43  Identities=19%  Similarity=0.124  Sum_probs=35.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .+++++++.|     ++++++++++|  ++|+||||+|||||+ +++++..
T Consensus        26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~-~~i~~~~   73 (254)
T 1ixz_A           26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHH-HHHHHHh
Confidence            3445555444     78999999999  999999999999999 9998753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.08  E-value=1.8e-05  Score=64.52  Aligned_cols=89  Identities=16%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      .+..+.|.||.|+|||||+ +.+.... ..+..+.........               ..  ..+   .   +  ..+.+
T Consensus        51 ~~~~~ll~G~~G~GKT~la-~~l~~~~~~~~~~~~~~~~~~~~---------------~~--~~~---~---~--~~~~~  104 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLI-HAACARANELERRSFYIPLGIHA---------------SI--STA---L---L--EGLEQ  104 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEEEEGGGGG---------------GS--CGG---G---G--TTGGG
T ss_pred             CCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEEEHHHHH---------------HH--HHH---H---H--HhccC
Confidence            5788999999999999999 8887532 223333222111000               00  000   0   0  12367


Q ss_pred             CcEEEEcCccC-------hHHHHHHHHHHHhcCCCE-EEEEecCh
Q 026304          109 LDVIGIDEAQF-------FEDLYEFCCNAADHDGKT-VVVAGLDG  145 (240)
Q Consensus       109 p~lllLDEP~~-------~~~i~~~l~~l~~~~g~t-vi~vtHd~  145 (240)
                      +.+|++||...       +..+.+++..... .+.. +|++++..
T Consensus       105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~  148 (242)
T 3bos_A          105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASAS  148 (242)
T ss_dssp             SSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSC
T ss_pred             CCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence            99999999855       2346677766665 3544 77777643

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.07  E-value=1.6e-06  Score=72.94  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHc---Cc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIR---SE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~---gl   55 (240)
                      ++|++++|+|||||||||++ ++|+   |+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~-k~La~~Lg~   53 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLC-KALAESLNW   53 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHH-HHHHHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHHhcCC
Confidence            78999999999999999999 9999   75

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.07  E-value=5.7e-06  Score=65.96  Aligned_cols=50  Identities=12%  Similarity=0.139  Sum_probs=40.1

Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      ..|++++||||++      ...+.++|+++.+  +.++|++||+...           ..+||+++.+.
T Consensus        85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~~-----------~~~ad~i~~v~  140 (173)
T 3kta_B           85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDVM-----------MANADKIIGVS  140 (173)
T ss_dssp             SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHHH-----------HTTCSEEEEEE
T ss_pred             CCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHHH-----------HHhCCEEEEEE
Confidence            4579999999988      3478888888764  4689999999754           47899999775

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.06  E-value=1.1e-06  Score=74.66  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=30.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++++++++++|  ++|+||||+|||||+ ++|++..
T Consensus        65 l~~~~~~~~~g--vll~Gp~GtGKTtl~-~~i~~~~   97 (278)
T 1iy2_A           65 FHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGEA   97 (278)
T ss_dssp             HHHTTCCCCCE--EEEECCTTSSHHHHH-HHHHHHT
T ss_pred             HHHcCCCCCCe--EEEECCCcChHHHHH-HHHHHHc
Confidence            67899999999  999999999999999 9998853

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.06  E-value=3.4e-06  Score=78.14  Aligned_cols=32  Identities=6%  Similarity=0.015  Sum_probs=28.1

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.+++++.++..+.|.|++||||||++ +.|..
T Consensus       158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L-~~li~  189 (512)
T 2ius_A          158 EPVVADLAKMPHLLVAGTTGSGASVGV-NAMIL  189 (512)
T ss_dssp             CEEEEEGGGSCSEEEECCTTSSHHHHH-HHHHH
T ss_pred             CEEEEEcccCceEEEECCCCCCHHHHH-HHHHH
Confidence            357888999999999999999999999 77654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.05  E-value=1e-06  Score=77.57  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             cceeEee--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccC-CCeEEEccCce
Q 026304           14 NQVNSGR--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYA-IDSVVTHDGAK   85 (240)
Q Consensus        14 ~~ls~~~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~-~~~~v~q~~~~   85 (240)
                      ..++.+|  |+.+..-+.+|+++.|.|++|+|||||+++++......|..+..++-...     .|.- ...-+......
T Consensus        27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~  106 (338)
T 4a1f_A           27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINMHDLE  106 (338)
T ss_dssp             CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCHHHHh
Confidence            3455555  66666689999999999999999999994554444446766666543210     0100 00000000000


Q ss_pred             ecceecCcchhHHHhhchhhhccCcEEEEcCccC-hHHHHHHHHHHHhcC-CCEEEEEec
Q 026304           86 LPCWALPELTSFRQKLGDDAYAKLDVIGIDEAQF-FEDLYEFCCNAADHD-GKTVVVAGL  143 (240)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~p~lllLDEP~~-~~~i~~~l~~l~~~~-g~tvi~vtH  143 (240)
                      ...++-.+...+..  ....+.++++++.|+|.. ..++...++++.++. +..+|++-|
T Consensus       107 ~g~Ls~~e~~~l~~--a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          107 SGRLDDDQWENLAK--CFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDY  164 (338)
T ss_dssp             HTCCCHHHHHHHHH--HHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred             cCCCCHHHHHHHHH--HHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            00000000000110  112346788999999964 678888888887756 788888865

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.04  E-value=7e-07  Score=80.78  Aligned_cols=34  Identities=18%  Similarity=-0.038  Sum_probs=32.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -++++|+++.|+.++|+|+||||||||| ++|++.
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL-~~Lsg~  180 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLL-AAMTRA  180 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHH-HHHCSS
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHH-HHHHcC
Confidence            4689999999999999999999999999 999986

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.04  E-value=3e-05  Score=66.05  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++..+.|.||+|+||||++ +.+++.
T Consensus        53 ~~~~vll~Gp~GtGKT~la-~~la~~   77 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLA-RAVATE   77 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHH-HHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHH-HHHHHH
Confidence            5678999999999999999 999763

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.02  E-value=7.6e-06  Score=72.64  Aligned_cols=53  Identities=15%  Similarity=0.202  Sum_probs=42.2

Q ss_pred             hhcc-CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          105 AYAK-LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       105 l~~~-p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +..+ |++||||||++      ...+.+.|.++..  +.+||++||+++ +          ..+||++++|+.
T Consensus       301 l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~~-~----------~~~~d~~~~l~k  360 (371)
T 3auy_A          301 LIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHRE-L----------EDVADVIINVKK  360 (371)
T ss_dssp             HHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCGG-G----------GGGCSEEEEEEE
T ss_pred             HhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChHH-H----------HhhCCEEEEEEe
Confidence            3568 99999999988      3467777777533  468999999986 5          589999999874

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.01  E-value=1.7e-07  Score=82.20  Aligned_cols=46  Identities=20%  Similarity=0.109  Sum_probs=38.1

Q ss_pred             eEEEcceeEee-----ecCCCCcccCc-------EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSG-------EIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~G-------e~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      +++.++++..|     ++++++.+.+|       +.++|+||||+|||||+ ++++|..
T Consensus        18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa-~~ia~~l   75 (334)
T 1in4_A           18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA-HIIASEL   75 (334)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH-HHHHHHH
T ss_pred             HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH-HHHHHHh
Confidence            45666676655     67888888877       89999999999999999 9999853

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=98.01  E-value=5.8e-06  Score=71.77  Aligned_cols=64  Identities=14%  Similarity=-0.051  Sum_probs=39.8

Q ss_pred             ccCcEEEEcCccCh------------------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccc------hHHHHHhhc
Q 026304          107 AKLDVIGIDEAQFF------------------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFG------SVLDIIPLA  162 (240)
Q Consensus       107 ~~p~lllLDEP~~~------------------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~------~~~~L~~~a  162 (240)
                      .+++++++|..+..                  .+++..|+.++++.+.+||++.|-.......|+      ....+...+
T Consensus       203 ~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~  282 (322)
T 2i1q_A          203 NNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAA  282 (322)
T ss_dssp             CEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHC
T ss_pred             cCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcC
Confidence            57999999998541                  123445556666689999998885543333331      123457778


Q ss_pred             cceeeecc
Q 026304          163 DTVTKLTA  170 (240)
Q Consensus       163 d~i~~l~~  170 (240)
                      |.++.|+.
T Consensus       283 d~~i~l~~  290 (322)
T 2i1q_A          283 TFRFFVRK  290 (322)
T ss_dssp             SEEEEEEE
T ss_pred             cEEEEEEe
Confidence            88888864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=98.01  E-value=1.7e-05  Score=65.31  Aligned_cols=65  Identities=12%  Similarity=-0.067  Sum_probs=42.0

Q ss_pred             hccCcEEEEcCccC----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          106 YAKLDVIGIDEAQF----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       106 ~~~p~lllLDEP~~----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ..+|+++++|--+.          ..++...|+.++++.++++++++|-.......+.....+...||-|+.|..
T Consensus       133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~~  207 (251)
T 2zts_A          133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL  207 (251)
T ss_dssp             HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred             hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEEE
Confidence            45889999996533          335666777777778999999998654332222223334667898888864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.01  E-value=6.9e-06  Score=66.04  Aligned_cols=23  Identities=30%  Similarity=0.271  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+.|.||+|+|||||+ +.++..
T Consensus        55 ~~~~l~G~~GtGKT~la-~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLL-AAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CeEEEECCCCCCHHHHH-HHHHHH
Confidence            68999999999999999 888764

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.01  E-value=1.8e-06  Score=67.69  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .|++++|+|||||||||++ +.|++.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~-~~La~~   27 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIG-RQLAQQ   27 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH-HHHHHH
Confidence            4678999999999999999 999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.01  E-value=2.2e-06  Score=69.83  Aligned_cols=30  Identities=13%  Similarity=0.102  Sum_probs=24.4

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |+...+|++++|+||||||||||+ +.|.+.
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~-~~L~~~   42 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIK-NALLSQ   42 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHH-HHHHhh
Confidence            445568999999999999999999 888764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.00  E-value=2.9e-06  Score=68.73  Aligned_cols=28  Identities=21%  Similarity=0.160  Sum_probs=25.7

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..++|++++|+|+|||||||++ +.|.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~-~~l~~~   45 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLA-NQLSQT   45 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence            4678999999999999999999 999885

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.00  E-value=2.6e-06  Score=82.74  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.2

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +..|+.+.|+||+||||||++ ..+.+
T Consensus       106 l~~~~~vii~gpTGSGKTtll-p~ll~  131 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQI-PQFVL  131 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHH-HHHHH
T ss_pred             HhCCCeEEEECCCCCCHHHHH-HHHHH
Confidence            557899999999999999987 77744

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.00  E-value=3.3e-06  Score=68.41  Aligned_cols=32  Identities=25%  Similarity=0.219  Sum_probs=27.8

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++--++++|.+++|+|++||||||++ +.|.+.
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~-~~L~~~   44 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLA-KNLQKH   44 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHH-HHHHTT
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHH-HHHHHh
Confidence            45557889999999999999999999 999874

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.00  E-value=9.1e-06  Score=70.35  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      .+..+.|.||+|+|||||+ +.+.+... .+..+..++......           .+.....-.....+.     ....+
T Consensus        36 ~~~~lll~G~~GtGKT~la-~~i~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~-----~~~~~   98 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSADDFAQ-----------AMVEHLKKGTINEFR-----NMYKS   98 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHHHHHH-----------HHHHHHHHTCHHHHH-----HHHHT
T ss_pred             CCCeEEEECCCCCcHHHHH-HHHHHHHHHCCCEEEEEEHHHHHH-----------HHHHHHHcCcHHHHH-----HHhcC
Confidence            4568999999999999999 98876432 233333222110000           000000000000111     12356


Q ss_pred             CcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecC
Q 026304          109 LDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLD  144 (240)
Q Consensus       109 p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd  144 (240)
                      +++|++||+..       +..+...+..+.+ .+..+|++++.
T Consensus        99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~  140 (324)
T 1l8q_A           99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDR  140 (324)
T ss_dssp             CSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESS
T ss_pred             CCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence            99999999965       2356666666665 56667776654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.99  E-value=7.8e-06  Score=71.30  Aligned_cols=126  Identities=13%  Similarity=0.068  Sum_probs=60.3

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC--CceEEeeccchh---cccCCCeEEEccCceecceecCcc-hhHHHh
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN--GRNIAMIKSSKD---TRYAIDSVVTHDGAKLPCWALPEL-TSFRQK  100 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~--g~~i~~~~~~~~---~~~~~~~~v~q~~~~~~~~~~~~~-~~~~~~  100 (240)
                      =+++| ++.|.||.|+|||||++.++....-.  |..+..+.....   .+....++-...-.+....+..+. ......
T Consensus        25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~  103 (333)
T 3io5_A           25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ  103 (333)
T ss_dssp             CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred             CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence            47899 99999999999999986777655432  444444432210   010001111111011111122222 111111


Q ss_pred             hchhhhccCcEEEEcCccCh---------------------HHHHHHHH---HHHhcCCCEEEEEecChhhhhcccch
Q 026304          101 LGDDAYAKLDVIGIDEAQFF---------------------EDLYEFCC---NAADHDGKTVVVAGLDGDYLRRSFGS  154 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~---------------------~~i~~~l~---~l~~~~g~tvi~vtHd~~~~~~~f~~  154 (240)
                      +....-.+|+++++|=.++.                     +.+.+.|+   .++++.++++|++.|-.. .+..|+.
T Consensus       104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~k-~G~~fg~  180 (333)
T 3io5_A          104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTYE-TQEMFSK  180 (333)
T ss_dssp             HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC----------
T ss_pred             HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCeee-cCcccCC
Confidence            10011247999999976441                     01222333   345568999999999877 7666743

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.99  E-value=2.5e-06  Score=75.65  Aligned_cols=34  Identities=18%  Similarity=0.146  Sum_probs=28.5

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++++++. .+|++++|+||||||||||+ ++|.|..
T Consensus       206 l~~L~~~-~~G~~~~lvG~sG~GKSTLl-n~L~g~~  239 (358)
T 2rcn_A          206 LKPLEEA-LTGRISIFAGQSGVGKSSLL-NALLGLQ  239 (358)
T ss_dssp             HHHHHHH-HTTSEEEEECCTTSSHHHHH-HHHHCCS
T ss_pred             HHHHHHh-cCCCEEEEECCCCccHHHHH-HHHhccc
Confidence            4555554 47999999999999999999 9999963

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.99  E-value=3e-06  Score=80.02  Aligned_cols=34  Identities=15%  Similarity=0.038  Sum_probs=32.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++++.+.+|+.++|+||||+|||||+ ++|+++
T Consensus        50 l~~l~~~i~~g~~vll~Gp~GtGKTtla-r~ia~~   83 (604)
T 3k1j_A           50 VEVIKTAANQKRHVLLIGEPGTGKSMLG-QAMAEL   83 (604)
T ss_dssp             HHHHHHHHHTTCCEEEECCTTSSHHHHH-HHHHHT
T ss_pred             HhhccccccCCCEEEEEeCCCCCHHHHH-HHHhcc
Confidence            6789999999999999999999999999 999986

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.99  E-value=4.7e-06  Score=71.80  Aligned_cols=29  Identities=24%  Similarity=0.202  Sum_probs=25.3

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.+.++..+.|.||+|+|||||+ +.+++.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la-~ala~~   72 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLA-KAIANE   72 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHH-HHHHHH
T ss_pred             cCCCCCceEEEECCCCcCHHHHH-HHHHHH
Confidence            34678889999999999999999 999863

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.95  E-value=5.4e-06  Score=72.06  Aligned_cols=121  Identities=12%  Similarity=0.069  Sum_probs=67.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh-----cccC--CCeEEEccCceecc--eec
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD-----TRYA--IDSVVTHDGAKLPC--WAL   91 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~-----~~~~--~~~~v~q~~~~~~~--~~~   91 (240)
                      |+.+..-+++|+++.|.|++|+|||||+++++......|..+..++-...     .|..  ..++-.+. .....  ++-
T Consensus        58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~~~-l~~~~~~l~~  136 (315)
T 3bh0_A           58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQK-IKAARRDFAS  136 (315)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCHHH-HHSCHHHHCS
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCHHH-HhcCCCCCCH
Confidence            66666679999999999999999999984554444445555555432210     0100  00000000 00000  111


Q ss_pred             CcchhHHHhhchhhhccCcEEEEcCccC-hHHHHHHHHHHHhcCCCE--EEEEecC
Q 026304           92 PELTSFRQKLGDDAYAKLDVIGIDEAQF-FEDLYEFCCNAADHDGKT--VVVAGLD  144 (240)
Q Consensus        92 ~~~~~~~~~~~~~l~~~p~lllLDEP~~-~~~i~~~l~~l~~~~g~t--vi~vtHd  144 (240)
                      .+...+..  +...+.++++++.|+|.. ..++...++++.++.+..  +|++-|-
T Consensus       137 ~~~~~l~~--a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          137 EDWGKLSM--AIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             SCHHHHHH--HHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred             HHHHHHHH--HHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence            11111111  111245678999999854 677888888887656777  8877663

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.93  E-value=3.5e-05  Score=69.98  Aligned_cols=147  Identities=15%  Similarity=0.065  Sum_probs=80.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccch-----hcccC--CCeEEEc---cC------
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSK-----DTRYA--IDSVVTH---DG------   83 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~-----~~~~~--~~~~v~q---~~------   83 (240)
                      |+.+.--+++|+++.|.|++|+|||||++++...... .|..+..++...     ..|.-  ..++-.+   .+      
T Consensus       190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l~~~~  269 (444)
T 2q6t_A          190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRD  269 (444)
T ss_dssp             HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGCCHHH
T ss_pred             hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCCCHHH
Confidence            5555556899999999999999999999444443333 365665543211     00100  0000000   00      


Q ss_pred             --------------cee----cceecCcchhHHHhhchh-hhccCcEEEEcCccC---h-------------HHHHHHHH
Q 026304           84 --------------AKL----PCWALPELTSFRQKLGDD-AYAKLDVIGIDEAQF---F-------------EDLYEFCC  128 (240)
Q Consensus        84 --------------~~~----~~~~~~~~~~~~~~~~~~-l~~~p~lllLDEP~~---~-------------~~i~~~l~  128 (240)
                                    .++    +..++.   .+...+... .-.+++++++|..+.   .             .++...|+
T Consensus       270 ~~~~~~a~~~l~~~~l~i~d~~~~s~~---~l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk  346 (444)
T 2q6t_A          270 FSRLVDVASRLSEAPIYIDDTPDLTLM---EVRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLK  346 (444)
T ss_dssp             HHHHHHHHHHHHTSCEEEECCTTCBHH---HHHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCEEEECCCCCCHH---HHHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHH
Confidence                          000    001111   111111111 124799999998743   1             24666777


Q ss_pred             HHHhcCCCEEEEEecChhhhhc---------ccchHHHHHhhccceeeecc
Q 026304          129 NAADHDGKTVVVAGLDGDYLRR---------SFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       129 ~l~~~~g~tvi~vtHd~~~~~~---------~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .++++.+++||+++|-......         .+-.+..+...||.|+.|..
T Consensus       347 ~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r  397 (444)
T 2q6t_A          347 ALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR  397 (444)
T ss_dssp             HHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred             HHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence            8887789999999994332211         01122345778999999976

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.93  E-value=1.2e-06  Score=76.71  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=29.4

Q ss_pred             ecCCCCcccCcE------EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGE------IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge------~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      +++++..+..++      +++|+||||||||||+ ++|.++.
T Consensus        76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~-~~L~~ll  116 (321)
T 3tqc_A           76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTS-RVLKALL  116 (321)
T ss_dssp             HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHH-HHHHHHh
Confidence            556677776666      9999999999999999 9998863

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.89  E-value=6.5e-06  Score=67.04  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=25.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.+.++++.+ .+.+|+|||||||||++ .+|.-
T Consensus        14 ~~~~~i~f~~-~~~~I~G~NgsGKStil-~ai~~   45 (203)
T 3qks_A           14 HSDTVVEFKE-GINLIIGQNGSGKSSLL-DAILV   45 (203)
T ss_dssp             BSSEEEECCS-EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             ccceEEEeCC-CeEEEEcCCCCCHHHHH-HHHHH
Confidence            4555666666 49999999999999999 87753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.86  E-value=3.1e-05  Score=65.48  Aligned_cols=26  Identities=19%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.++.-+.|.||.|+|||||+ +.++.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la-~~la~   73 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLA-KAVAT   73 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHH-HHHHH
T ss_pred             CCCCCeEEEECCCCCcHHHHH-HHHHH
Confidence            356667999999999999999 98875

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.86  E-value=1.7e-05  Score=82.31  Aligned_cols=141  Identities=16%  Similarity=0.055  Sum_probs=79.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhc---ccCCCeEEEccCceecceecCcchhHHHhhch
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDT---RYAIDSVVTHDGAKLPCWALPELTSFRQKLGD  103 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~  103 (240)
                      -+++|+++.|.||+|+|||||++.++......|..+..++-....   +....++-.+.-.+....++.   .+...+..
T Consensus       728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~le---ei~~~l~~  804 (1706)
T 3cmw_A          728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE---QALEICDA  804 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH---HHHHHHHH
T ss_pred             CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHH---HHHHHHHH
Confidence            489999999999999999999944443333445555544321100   000001111111111111111   22222111


Q ss_pred             h-hhccCcEEEEcCccCh-------------------HHHHHHHHH---HHhcCCCEEEEEecChhhhhcccch------
Q 026304          104 D-AYAKLDVIGIDEAQFF-------------------EDLYEFCCN---AADHDGKTVVVAGLDGDYLRRSFGS------  154 (240)
Q Consensus       104 ~-l~~~p~lllLDEP~~~-------------------~~i~~~l~~---l~~~~g~tvi~vtHd~~~~~~~f~~------  154 (240)
                      . .-.+|+++++|+.+..                   .++.+.+++   ++++.+++||+++|-.......|+.      
T Consensus       805 lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p~g  884 (1706)
T 3cmw_A          805 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTG  884 (1706)
T ss_dssp             HHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESS
T ss_pred             HHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCccccCC
Confidence            0 1258999999998551                   123344444   4555799999999966555555641      


Q ss_pred             HHHHHhhccceeeecc
Q 026304          155 VLDIIPLADTVTKLTA  170 (240)
Q Consensus       155 ~~~L~~~ad~i~~l~~  170 (240)
                      ...|...||-++.++.
T Consensus       885 s~~Leq~ADvvl~L~R  900 (1706)
T 3cmw_A          885 GNALKFYASVRLDIRR  900 (1706)
T ss_dssp             CSHHHHHEEEEEEEEE
T ss_pred             cchhhheeeEEEEEEe
Confidence            3457888999999976

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.84  E-value=1.9e-05  Score=71.43  Aligned_cols=43  Identities=16%  Similarity=0.149  Sum_probs=33.8

Q ss_pred             eEEEcceeEeeecCC-CCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           10 AVTTNQVNSGRDRVG-LPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        10 ~l~~~~ls~~~l~~v-sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .|+++|+ ++| .+. .+++.+|++++|+||||||||||+ ++|.++
T Consensus         6 ~l~~~~~-~~~-~~~~~~~~~~~~~~~i~G~nG~GKstll-~ai~~~   49 (430)
T 1w1w_A            6 GLELSNF-KSY-RGVTKVGFGESNFTSIIGPNGSGKSNMM-DAISFV   49 (430)
T ss_dssp             EEEEESC-SSC-CSEEEEECTTCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEEeCE-EEE-CCceeEEecCCCEEEEECCCCCCHHHHH-HHHHhh
Confidence            4677777 466 222 256778999999999999999999 998774

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.83  E-value=1.1e-06  Score=77.19  Aligned_cols=52  Identities=19%  Similarity=0.094  Sum_probs=40.1

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEE
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIA   63 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~   63 (240)
                      ++.+++++.|     ++++++++.+|.+++|+|++|+|||||+ +.|++.. ..|.++.
T Consensus        31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~-~~l~~~~~~~~~~v~   88 (341)
T 2p67_A           31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFL-EAFGMLLIREGLKVA   88 (341)
T ss_dssp             HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHH-HHHHHHHHHTTCCEE
T ss_pred             hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEE
Confidence            4555555554     6789999999999999999999999999 9888753 2344443

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.82  E-value=6.2e-06  Score=77.14  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=27.2

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ..+.+|++++|+|+||||||||+ ++|++..
T Consensus       364 ~~~~~G~iI~LiG~sGSGKSTLa-r~La~~L  393 (552)
T 3cr8_A          364 PRERQGFTVFFTGLSGAGKSTLA-RALAARL  393 (552)
T ss_dssp             CGGGSCEEEEEEESSCHHHHHHH-HHHHHHH
T ss_pred             cccccceEEEEECCCCChHHHHH-HHHHHhh
Confidence            36789999999999999999999 9999863

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.82  E-value=8.8e-06  Score=64.84  Aligned_cols=31  Identities=26%  Similarity=0.220  Sum_probs=25.3

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|++..+|..++|+|++||||||+. +.|..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~-~~La~   32 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMA-EMIAA   32 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            68999999999999999999999999 88864

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.81  E-value=1e-05  Score=67.12  Aligned_cols=34  Identities=18%  Similarity=0.091  Sum_probs=24.4

Q ss_pred             ecCCCCccc---CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRN---SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~---~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |.++|+.+.   +|.+++|.||+||||||++ +.|...
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~-~~l~~~   49 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVI-NEVYHR   49 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHH-HHHHHH
Confidence            566666665   9999999999999999999 888764

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.78  E-value=4.4e-06  Score=74.68  Aligned_cols=45  Identities=20%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             eEEEcceeEee------ec--------------CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           10 AVTTNQVNSGR------DR--------------VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        10 ~l~~~~ls~~~------l~--------------~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.++|+++.|      ++              |+++.+.+|+.++|+||+|+|||||+ +.|.+.
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl-~~Iar~  197 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL-QNIAQS  197 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH-HHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH-HHHHHH
Confidence            46788999988      67              79999999999999999999999999 888774

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.78  E-value=2.9e-06  Score=78.63  Aligned_cols=33  Identities=15%  Similarity=0.015  Sum_probs=29.8

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++++++.+| +.+|+|+||||||||+ .+|..+
T Consensus        51 ~~~~~l~f~~g-~n~i~G~NGaGKS~ll-eAl~~l   83 (517)
T 4ad8_A           51 ITQLELELGGG-FCAFTGETGAGKSIIV-DALGLL   83 (517)
T ss_dssp             BSCEEEECCCS-EEEEEESHHHHHHHHT-HHHHHH
T ss_pred             eeeEEEecCCC-eEEEEcCCCCCHHHHH-HHHHHH
Confidence            78999999999 9999999999999999 888543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.75  E-value=5e-06  Score=66.14  Aligned_cols=23  Identities=35%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++|+|+||||||||+ +.|.|+
T Consensus         3 ~~v~IvG~SGsGKSTL~-~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLI-TRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHH-HHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHH
Confidence            58999999999999999 999986

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.75  E-value=1.3e-05  Score=63.25  Aligned_cols=26  Identities=27%  Similarity=0.124  Sum_probs=23.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+|++++|+|++||||||++ +.|.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~-~~L~~~   28 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVS-MALEEY   28 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHHH
Confidence            47999999999999999999 999874

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.74  E-value=1.5e-05  Score=70.79  Aligned_cols=41  Identities=15%  Similarity=0.195  Sum_probs=30.9

Q ss_pred             EEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           11 VTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        11 l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ..+..|+..-   +++..+++.+| +.+|+|||||||||+| ..|.
T Consensus         3 M~l~~L~l~nFr~~~~~~i~f~~g-l~vi~G~NGaGKT~il-eAI~   46 (371)
T 3auy_A            3 MILKEIRMNNFKSHVNSRIKFEKG-IVAIIGENGSGKSSIF-EAVF   46 (371)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCSE-EEEEEECTTSSHHHHH-HHHH
T ss_pred             cEEeEEEEEccccccceEEecCCC-eEEEECCCCCCHHHHH-HHHH
Confidence            4555555542   56677777774 9999999999999999 7764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.72  E-value=1.5e-05  Score=64.30  Aligned_cols=21  Identities=29%  Similarity=0.264  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|+|||||||||+. +.|++
T Consensus         4 ~i~l~G~~GsGKST~~-~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIA-NLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            7899999999999999 99987

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.70  E-value=7.1e-05  Score=78.70  Aligned_cols=145  Identities=17%  Similarity=0.113  Sum_probs=83.1

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh------cccCCCeEEEccCceecceecCcchhHHHh
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD------TRYAIDSVVTHDGAKLPCWALPELTSFRQK  100 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~------~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~  100 (240)
                      -+++|+++.|.||.|+|||||+++++......|..+..++....      .+.+   +-.+.-.+....+..+.......
T Consensus       379 Gl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~a~~lG---vd~~~L~I~~~~~~e~il~~~~~  455 (2050)
T 3cmu_A          379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG---VDIDNLLCSQPDTGEQALEICDA  455 (2050)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTT---CCTTTCEEECCSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHHHHHcC---CCHHHeEEeCCCCHHHHHHHHHH
Confidence            48899999999999999999996666554445555555432210      1111   10010001111122221111111


Q ss_pred             hchhhhccCcEEEEcCccCh-------------------HHHHHHHHHH---HhcCCCEEEEEecChhhhhcccc-----
Q 026304          101 LGDDAYAKLDVIGIDEAQFF-------------------EDLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFG-----  153 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~-------------------~~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~-----  153 (240)
                      +.  .-.+|+++++|..+..                   .++...++.+   +++.+++||+++|-....+..|+     
T Consensus       456 lv--~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~p  533 (2050)
T 3cmu_A          456 LA--RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT  533 (2050)
T ss_dssp             HH--HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEEC
T ss_pred             HH--HhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCC
Confidence            10  1257999999987541                   1234455555   45689999999997665544442     


Q ss_pred             -hHHHHHhhccceeeecc-eeeccC
Q 026304          154 -SVLDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       154 -~~~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                       ....|..+||-++.|+. .....+
T Consensus       534 sGg~ale~~ADv~l~L~R~~~~~~g  558 (2050)
T 3cmu_A          534 TGGNALKFYASVRLDIRRIGAVKEG  558 (2050)
T ss_dssp             SSHHHHHHHEEEEEEEEEEEEEEET
T ss_pred             CCcchhhhhCCEEEEEEecccccCC
Confidence             23357889999999887 443344

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.70  E-value=1.5e-05  Score=65.16  Aligned_cols=24  Identities=29%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.+++|+||+||||||++ +.|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~-~~L~~~   28 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLC-KAMAEA   28 (227)
T ss_dssp             SCEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHHH
Confidence            568999999999999999 999763

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.68  E-value=0.00015  Score=63.84  Aligned_cols=25  Identities=28%  Similarity=0.298  Sum_probs=21.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..-.++++|++|+|||||+ +.+.|.
T Consensus       166 ~~~~v~lvG~~gvGKSTLi-n~L~~~  190 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLL-KALTTA  190 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHH-HHHCSS
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence            4458999999999999999 999875

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.67  E-value=5e-05  Score=78.89  Aligned_cols=148  Identities=16%  Similarity=0.077  Sum_probs=82.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhc---ccCCCeEEEccCceecceecCcchhHHHhhch
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDT---RYAIDSVVTHDGAKLPCWALPELTSFRQKLGD  103 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~---~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~  103 (240)
                      -+++|+++.|.||.|+|||||+++++......|..+..+......   +....++-.+.-.+....+..+.......+  
T Consensus       379 Gl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~l--  456 (1706)
T 3cmw_A          379 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL--  456 (1706)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH--
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHH--
Confidence            488999999999999999999966665544455555555422100   000001100100001111111111111111  


Q ss_pred             hhhccCcEEEEcCccCh-------------------HHHHHHHHHH---HhcCCCEEEEEecChhhhhcccch------H
Q 026304          104 DAYAKLDVIGIDEAQFF-------------------EDLYEFCCNA---ADHDGKTVVVAGLDGDYLRRSFGS------V  155 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~~-------------------~~i~~~l~~l---~~~~g~tvi~vtHd~~~~~~~f~~------~  155 (240)
                      ..-.+|+++++|..+..                   ..+.+.++++   +++.+++||+++|-...++..|+.      .
T Consensus       457 v~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg  536 (1706)
T 3cmw_A          457 ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGG  536 (1706)
T ss_dssp             HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSC
T ss_pred             HHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCC
Confidence            01257999999998541                   1123444444   455799999999976665554432      2


Q ss_pred             HHHHhhccceeeecc-eeeccC
Q 026304          156 LDIIPLADTVTKLTA-RCELCG  176 (240)
Q Consensus       156 ~~L~~~ad~i~~l~~-~~~~~g  176 (240)
                      ..|..+||-++.+.. .....+
T Consensus       537 ~ale~~ADv~L~L~R~~~~~~g  558 (1706)
T 3cmw_A          537 NALKFYASVRLDIRRIGAVKEG  558 (1706)
T ss_dssp             SHHHHHEEEEEEEEEEEEEEET
T ss_pred             cceeeeCCEEEEEEeccccccC
Confidence            456788998888876 433333

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=97.66  E-value=0.00011  Score=66.79  Aligned_cols=150  Identities=13%  Similarity=-0.018  Sum_probs=82.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccC--CCeEEE---ccC-------
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYA--IDSVVT---HDG-------   83 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~--~~~~v~---q~~-------   83 (240)
                      |+.+.--+.+|+++.|.|+.|+|||||+++++......|..+..++-..     ..|.-  ..++-.   ..+       
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~~~l~~g~~~l~~~  266 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARRDFASE  266 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCHHHHHHTGGGTCCS
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCHHHHhcccCCCCHH
Confidence            4544446899999999999999999998566555444566666654221     00100  000000   000       


Q ss_pred             ---------------cee-cceecCcchhHHHhhchh-hhccCc--EEEEcCccC---------h----HHHHHHHHHHH
Q 026304           84 ---------------AKL-PCWALPELTSFRQKLGDD-AYAKLD--VIGIDEAQF---------F----EDLYEFCCNAA  131 (240)
Q Consensus        84 ---------------~~~-~~~~~~~~~~~~~~~~~~-l~~~p~--lllLDEP~~---------~----~~i~~~l~~l~  131 (240)
                                     .++ ....-.....+...+... .-.+++  ++++|--+.         +    .++...|+.++
T Consensus       267 ~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lA  346 (444)
T 3bgw_A          267 DWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMA  346 (444)
T ss_dssp             CHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence                           000 000000111111111110 123788  999996532         1    24666777888


Q ss_pred             hcCCCEEEEEecChhhhhc---------ccchHHHHHhhccceeeecc
Q 026304          132 DHDGKTVVVAGLDGDYLRR---------SFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       132 ~~~g~tvi~vtHd~~~~~~---------~f~~~~~L~~~ad~i~~l~~  170 (240)
                      ++.+++||+++|-......         .+-.+..+...||-|+.|..
T Consensus       347 ke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r  394 (444)
T 3bgw_A          347 RELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR  394 (444)
T ss_dssp             HHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred             HHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence            7789999999995432211         11223356888999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.65  E-value=1.8e-05  Score=63.99  Aligned_cols=27  Identities=30%  Similarity=0.358  Sum_probs=23.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +..+|.+++|+||+||||||+. +.|..
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~-~~L~~   34 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLI-KKVLS   34 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHH-HHHHH
T ss_pred             ccccCCEEEEECCCCCCHHHHH-HHHHH
Confidence            4678999999999999999999 88865

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.65  E-value=5.6e-05  Score=67.01  Aligned_cols=41  Identities=22%  Similarity=0.106  Sum_probs=34.2

Q ss_pred             EEcceeEe-e--ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           12 TTNQVNSG-R--DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        12 ~~~~ls~~-~--l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|+.. |  +++++|++.+| +++|+|||||||||++ ++|.+
T Consensus         5 ~i~~L~l~~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll-~ai~~   48 (359)
T 2o5v_A            5 RLSALSTLNYRNLAPGTLNFPEG-VTGIYGENGAGKTNLL-EAAYL   48 (359)
T ss_dssp             CEEEEEEESBTTCCSEEEECCSE-EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEeEEEEeCccceeeeEEEEcCC-eEEEECCCCCChhHHH-HHHHH
Confidence            34445543 3  78999999999 9999999999999999 99876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.64  E-value=1.9e-05  Score=62.94  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .++|+|+||||||||+ +.+.|..
T Consensus        31 kv~lvG~~g~GKSTLl-~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLL-SRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHHSC
T ss_pred             EEEEECcCCCCHHHHH-HHHhcCC
Confidence            6899999999999999 9998864

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.62  E-value=2.1e-05  Score=63.20  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|+|+|||||||++ +.|++
T Consensus         3 ~i~i~G~~GsGKSTl~-~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVA-QMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHHH
Confidence            6899999999999999 99987

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.59  E-value=2.6e-05  Score=62.37  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .++|+|+||||||||+ +.+.|..
T Consensus         7 kv~lvG~~g~GKSTLl-~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLL-SRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHHSC
T ss_pred             EEEEECcCCCCHHHHH-HHHhcCC
Confidence            5799999999999999 9998864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.56  E-value=0.00022  Score=59.17  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ....-+.|.||.|+||||++ +.++.
T Consensus        37 ~~~~~vll~G~~GtGKT~la-~~la~   61 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLA-KAVAT   61 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHH-HHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH-HHHHH
Confidence            44456889999999999999 98876

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.54  E-value=0.00066  Score=58.92  Aligned_cols=26  Identities=19%  Similarity=0.281  Sum_probs=22.1

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..+..-+.|.||.|+|||||+ +.++.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la-~ala~   67 (322)
T 1xwi_A           42 RTPWRGILLFGPPGTGKSYLA-KAVAT   67 (322)
T ss_dssp             CCCCSEEEEESSSSSCHHHHH-HHHHH
T ss_pred             CCCCceEEEECCCCccHHHHH-HHHHH
Confidence            345567899999999999999 98876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.52  E-value=5e-05  Score=60.26  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=28.5

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEE
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIA   63 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~   63 (240)
                      +...+|.+++|+|++||||||+. +.++.. ...|..+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~-~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIA-TRLADLLQKEGYRVE   45 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEE
T ss_pred             cccCCCcEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEE
Confidence            44568999999999999999999 988774 23344443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.52  E-value=3.3e-05  Score=70.06  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=26.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI   65 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~   65 (240)
                      ++.+++++||+||||||++ ..|++. .-.|..+...
T Consensus        96 ~~~vI~lvG~~GsGKTTt~-~kLA~~l~~~G~kVllv  131 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTA-GKLAYFYKKRGYKVGLV  131 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEE
Confidence            5899999999999999999 666654 4456665543

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.50  E-value=3.7e-05  Score=63.83  Aligned_cols=108  Identities=15%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             cCcEE-EEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcc---cC-CCeEEEccC---ceecceecCcchhHHHh
Q 026304           29 NSGEI-HVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTR---YA-IDSVVTHDG---AKLPCWALPELTSFRQK  100 (240)
Q Consensus        29 ~~Ge~-~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~---~~-~~~~v~q~~---~~~~~~~~~~~~~~~~~  100 (240)
                      .+|++ +.+.|+-|+||||++++....+.-.|.++....-....+   .. ..+ +.+.+   ..+......+ ..+.. 
T Consensus         3 ~~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~g-l~~~~~~~~~~~~~~~~e-~~l~~-   79 (228)
T 2r8r_A            3 ARGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNG-LPQQPLLRTEYRGMTLEE-MDLDA-   79 (228)
T ss_dssp             CCCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTT-SCBCCCEEEEETTEEEEE-CCHHH-
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcC-ccccCcceeecCCccccc-ccHHH-
Confidence            35664 778899999999997466655566777664332111000   00 000 00000   0011111111 11111 


Q ss_pred             hchhhhccCcEEEEcCccCh-------HHHHHHHHHHHhcCCCEEEEEec
Q 026304          101 LGDDAYAKLDVIGIDEAQFF-------EDLYEFCCNAADHDGKTVVVAGL  143 (240)
Q Consensus       101 ~~~~l~~~p~lllLDEP~~~-------~~i~~~l~~l~~~~g~tvi~vtH  143 (240)
                         .+..+|+++++||+-..       ...++.+..+.. .|..++.++|
T Consensus        80 ---~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N  125 (228)
T 2r8r_A           80 ---LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN  125 (228)
T ss_dssp             ---HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred             ---HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence               12358999999998431       123444444555 6888998887

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.50  E-value=4.2e-05  Score=65.77  Aligned_cols=27  Identities=19%  Similarity=0.182  Sum_probs=24.3

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++.+++|.||+|||||||+ +.|.++
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla-~~L~~~   54 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTS-IQIYNH   54 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHH-HHHHHH
Confidence            457899999999999999999 988875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.50  E-value=3.8e-05  Score=62.36  Aligned_cols=29  Identities=17%  Similarity=0.185  Sum_probs=26.0

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.+.+|.+++|+|++||||||+. +.|.+.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~-~~l~~~   48 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLA-VELEHQ   48 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHH-HHHHHH
Confidence            45788999999999999999999 998874

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.48  E-value=5.8e-05  Score=59.59  Aligned_cols=25  Identities=32%  Similarity=0.525  Sum_probs=21.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+|.+++|+|++||||||+. +.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~-~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQA-SRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46889999999999999999 88863

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.47  E-value=1.2e-05  Score=74.95  Aligned_cols=34  Identities=24%  Similarity=0.206  Sum_probs=30.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++++++++ +|+.++|+||||+|||||+ ++|++..
T Consensus        99 l~~~~~~~-~g~~vll~Gp~GtGKTtla-r~ia~~l  132 (543)
T 3m6a_A           99 VQKLTKSL-KGPILCLAGPPGVGKTSLA-KSIAKSL  132 (543)
T ss_dssp             HHHHSSSC-CSCEEEEESSSSSSHHHHH-HHHHHHH
T ss_pred             HHHhcccC-CCCEEEEECCCCCCHHHHH-HHHHHhc
Confidence            56788888 8999999999999999999 9998853

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.46  E-value=6.4e-05  Score=58.81  Aligned_cols=26  Identities=31%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+|..++|+|++|+|||||+ +.+.+.
T Consensus         2 ~~~~ki~ivG~~g~GKStLl-~~l~~~   27 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLL-NALAGR   27 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred             CCCCEEEEECCCCCCHHHHH-HHHhCC
Confidence            36889999999999999999 888874

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.45  E-value=5e-05  Score=70.16  Aligned_cols=32  Identities=25%  Similarity=0.228  Sum_probs=29.6

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++++.+++|  +.|+||||+|||||+ ++|++.
T Consensus        56 ~~~lg~~ip~G--vLL~GppGtGKTtLa-raIa~~   87 (499)
T 2dhr_A           56 FHEMGARIPKG--VLLVGPPGVGKTHLA-RAVAGE   87 (499)
T ss_dssp             TTTTSCCCCSE--EEEECSSSSSHHHHH-HHHHHH
T ss_pred             hhhccCCCCce--EEEECCCCCCHHHHH-HHHHHH
Confidence            67899999999  999999999999999 999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.41  E-value=6.4e-05  Score=64.79  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=22.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++.+++|+|++|+|||||+ +.|.|.
T Consensus         6 ~r~~~VaIvG~~nvGKSTLl-n~L~g~   31 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLL-NKLLGQ   31 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHH-HHHHTC
T ss_pred             ccCCEEEEECCCCCCHHHHH-HHHHCC
Confidence            34558999999999999999 999885

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.40  E-value=0.00033  Score=54.47  Aligned_cols=26  Identities=19%  Similarity=0.272  Sum_probs=21.4

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+..+.|.||.|+||||++ +.+...
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~-~~~~~~   66 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIV-EGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHH-HHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence            34567899999999999999 877653

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.38  E-value=0.00025  Score=55.10  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+..+.|.||.|+||||++ +.+...
T Consensus        41 ~~~~~vll~G~~G~GKT~la-~~~~~~   66 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIV-EGLAIK   66 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHH-HHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHH-HHHHHH
Confidence            34567899999999999999 877654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.37  E-value=5.8e-05  Score=60.64  Aligned_cols=24  Identities=25%  Similarity=0.219  Sum_probs=21.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+++|+|++||||||+. +.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla-~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVG-EAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHH-HHHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHHH
Confidence            458999999999999999 988753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.36  E-value=8.4e-05  Score=65.48  Aligned_cols=26  Identities=23%  Similarity=0.096  Sum_probs=23.4

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++.+++|+|++|||||||+ +.+.|.
T Consensus        72 ~~~~~v~lvG~pgaGKSTLl-n~L~~~   97 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFI-EYFGKM   97 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHH-HHHHHH
Confidence            34889999999999999999 999885

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.36  E-value=9.8e-05  Score=59.58  Aligned_cols=22  Identities=23%  Similarity=0.215  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.|.||.|+|||||+ +.+...
T Consensus        47 ~~ll~G~~G~GKT~l~-~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIA-RLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHH
Confidence            8999999999999999 888653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.34  E-value=0.00026  Score=61.17  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=24.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCch--hCCceEE
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSES--DNGRNIA   63 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~--~~g~~i~   63 (240)
                      +.-+.|.||.|+|||+|+ ++|+...  -.|..+.
T Consensus       152 ~~~lll~G~~GtGKT~La-~aia~~~~~~~g~~v~  185 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLL-AAMAHELSEKKGVSTT  185 (308)
T ss_dssp             CCEEEEECSTTSSHHHHH-HHHHHHHHHHSCCCEE
T ss_pred             CceEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEE
Confidence            678999999999999999 8887642  3444443

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.34  E-value=0.00013  Score=62.94  Aligned_cols=42  Identities=17%  Similarity=0.281  Sum_probs=32.7

Q ss_pred             cC-CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304           22 RV-GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI   65 (240)
Q Consensus        22 ~~-vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~   65 (240)
                      ++ ++++.+ |++++++|+||+||||++ ..+++. ...|.++...
T Consensus        89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~-~~la~~~~~~g~~v~l~  132 (297)
T 1j8m_F           89 EPKVIPDKI-PYVIMLVGVQGTGKTTTA-GKLAYFYKKKGFKVGLV  132 (297)
T ss_dssp             CCCCSCSSS-SEEEEEECSSCSSTTHHH-HHHHHHHHHTTCCEEEE
T ss_pred             ccccccCCC-CeEEEEECCCCCCHHHHH-HHHHHHHHHCCCeEEEE
Confidence            45 888877 999999999999999999 777765 3345555543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.0008  Score=59.15  Aligned_cols=25  Identities=28%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+..-+.|.||.|+|||||+ +.++.
T Consensus       115 ~~~~~vLl~GppGtGKT~la-~aia~  139 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIG-KCIAS  139 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHH-HHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH-HHHHH
Confidence            34567999999999999999 98875

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.32  E-value=2.9e-05  Score=68.64  Aligned_cols=34  Identities=12%  Similarity=0.018  Sum_probs=29.9

Q ss_pred             ecCCCCcccCcEE--EEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEI--HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.+++.+++|++  ++|+|++||||||+. ++|++.
T Consensus        12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~-~~la~~   47 (359)
T 2ga8_A           12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIA-EELCQI   47 (359)
T ss_dssp             HHHHHHTTTTCSCEEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             HHHHHHHhccCCeeEEEEECCCCCcHHHHH-HHHHHH
Confidence            5667788899988  999999999999999 988874

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.32  E-value=0.00036  Score=60.90  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=22.9

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      --+++|.++.|.||.|+|||||. ..++
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLA-lqlA  144 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLV-HALG  144 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHH-HHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHH-HHHH
Confidence            45778899999999999999999 5554

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.32  E-value=7.2e-05  Score=64.87  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.|.||+|+||||++ +.+++.
T Consensus        60 ~~ll~G~~G~GKT~la-~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTI-LALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHH
Confidence            3899999999999999 988874

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.31  E-value=9.5e-05  Score=61.10  Aligned_cols=26  Identities=27%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -.+|.+++|+|++||||||+. +.|++
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~-~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVA-KIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHH-HHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            457889999999999999999 98875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.30  E-value=0.00012  Score=57.36  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      |.++.|+|++||||||+. +.|..
T Consensus         3 ~~~i~l~G~~GsGKST~a-~~La~   25 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIV-RCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            578999999999999999 88864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.30  E-value=0.00019  Score=64.97  Aligned_cols=41  Identities=20%  Similarity=0.323  Sum_probs=32.3

Q ss_pred             cCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEee
Q 026304           22 RVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMI   65 (240)
Q Consensus        22 ~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~   65 (240)
                      ++++|+  +|++++++|+|||||||++ ..|++. ...|..+...
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~-~~LA~~l~~~g~~Vllv  132 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTA-AKLALYYKGKGRRPLLV  132 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEE
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHH-HHHHHHHHHcCCeEEEe
Confidence            467887  8999999999999999999 888775 3345555443

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.30  E-value=0.00011  Score=64.77  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=25.0

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |++++++++   .++|+|++|||||||+ +.+.|.
T Consensus        27 l~~i~~~lp---~I~vvG~~~sGKSSLl-n~l~g~   57 (360)
T 3t34_A           27 LPTLWDSLP---AIAVVGGQSSGKSSVL-ESIVGK   57 (360)
T ss_dssp             C----CCCC---EEEEECBTTSSHHHHH-HHHHTS
T ss_pred             cccccccCC---EEEEECCCCCcHHHHH-HHHhCC
Confidence            677888888   8999999999999999 999994

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.29  E-value=0.00013  Score=56.50  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|++|+|||||+ +.+.|.
T Consensus         4 ~~v~lvG~~gvGKStL~-~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIF-NALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHCC
T ss_pred             cEEEEECCCCCCHHHHH-HHHhCC
Confidence            36899999999999999 888875

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.29  E-value=6.8e-05  Score=60.04  Aligned_cols=33  Identities=27%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++|+..++++ ++++|++|+|||||+ +.+.+-
T Consensus        16 l~~~~~~~~~~k-i~lvG~~~vGKSsLi-~~l~~~   48 (198)
T 1f6b_A           16 LQFLGLYKKTGK-LVFLGLDNAGKTTLL-HMLKDD   48 (198)
T ss_dssp             HHHHTCTTCCEE-EEEEEETTSSHHHHH-HHHSCC
T ss_pred             HHHhhccCCCcE-EEEECCCCCCHHHHH-HHHhcC
Confidence            678889988885 689999999999999 888763

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.27  E-value=0.0012  Score=53.55  Aligned_cols=53  Identities=28%  Similarity=0.414  Sum_probs=39.8

Q ss_pred             ccCcEEEEcCccC--------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          107 AKLDVIGIDEAQF--------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       107 ~~p~lllLDEP~~--------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      .+.++|+|||...        .++++++|.+- - ....||+++......         |.++||.|-.|..
T Consensus       119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-p-~~~~vIlTGr~ap~~---------l~e~AD~VTem~~  179 (196)
T 1g5t_A          119 PLLDMVVLDELTYMVAYDYLPLEEVISALNAR-P-GHQTVIITGRGCHRD---------ILDLADTVSELRP  179 (196)
T ss_dssp             TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-C-TTCEEEEECSSCCHH---------HHHHCSEEEECCC
T ss_pred             CCCCEEEEeCCCccccCCCCCHHHHHHHHHhC-c-CCCEEEEECCCCcHH---------HHHhCcceeeecc
Confidence            5789999999943        35677776542 2 467999999986443         3799999999987

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.27  E-value=0.00013  Score=56.53  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|+|++||||||+. +.|..
T Consensus         3 ~i~l~G~~GsGKsT~~-~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVA-AKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 88864

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.26  E-value=0.00065  Score=58.72  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+..-+.|.||.|+|||+|+ +.++.
T Consensus        49 ~~~~~vLl~GppGtGKT~la-~aia~   73 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLA-KAVAT   73 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHH-HHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHH-HHHHH
Confidence            34557899999999999999 98875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.24  E-value=0.00017  Score=57.02  Aligned_cols=25  Identities=20%  Similarity=0.325  Sum_probs=22.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.++.|.|++||||||+. +.|..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~-~~L~~   27 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLS-QALAT   27 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            56889999999999999999 88864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.23  E-value=0.00013  Score=61.08  Aligned_cols=32  Identities=25%  Similarity=0.093  Sum_probs=27.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++.+ ...++.++.|+|++||||||+. +.|..
T Consensus        23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla-~~L~~   54 (253)
T 2p5t_B           23 TRGKK-SSKQPIAILLGGQSGAGKTTIH-RIKQK   54 (253)
T ss_dssp             HTTCC-CCSSCEEEEEESCGGGTTHHHH-HHHHH
T ss_pred             HccCC-cccCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            44554 6788999999999999999999 88875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.23  E-value=0.0012  Score=59.92  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+..-+.|.||.|+|||||+ +.++..
T Consensus       165 ~~~~~vLL~GppGtGKT~lA-~aia~~  190 (444)
T 2zan_A          165 TPWRGILLFGPPGTGKSYLA-KAVATE  190 (444)
T ss_dssp             CCCSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence            44567899999999999999 988763

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.22  E-value=0.00052  Score=61.62  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhh
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDA  105 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l  105 (240)
                      ..-++|  +.+.||.|+|||+|. +.+++..  |.++........               ...+.......+...+....
T Consensus       179 i~~prG--vLL~GPPGTGKTllA-kAiA~e~--~~~f~~v~~s~l---------------~sk~vGese~~vr~lF~~Ar  238 (405)
T 4b4t_J          179 IAQPKG--VILYGPPGTGKTLLA-RAVAHHT--DCKFIRVSGAEL---------------VQKYIGEGSRMVRELFVMAR  238 (405)
T ss_dssp             CCCCCC--EEEESCSSSSHHHHH-HHHHHHH--TCEEEEEEGGGG---------------SCSSTTHHHHHHHHHHHHHH
T ss_pred             CCCCCc--eEEeCCCCCCHHHHH-HHHHHhh--CCCceEEEhHHh---------------hccccchHHHHHHHHHHHHH
Confidence            334455  889999999999999 9998632  223222221110               00000000011122222233


Q ss_pred             hccCcEEEEcCccC----------------hHHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQF----------------FEDLYEFCCNAA---DHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~~----------------~~~i~~~l~~l~---~~~g~tvi~vtHd~~~~  148 (240)
                      ...|-+|++||-.+                ...+..+|.++-   ...+..||.+|..++.+
T Consensus       239 ~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L  300 (405)
T 4b4t_J          239 EHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL  300 (405)
T ss_dssp             HTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred             HhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence            46899999999843                112444444442   23466788999877654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.20  E-value=0.00059  Score=54.29  Aligned_cols=21  Identities=24%  Similarity=0.252  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|.||.|+||||++ +.+..
T Consensus        40 ~~ll~G~~G~GKT~l~-~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATA-IALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            3899999999999999 87765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.19  E-value=0.00019  Score=55.40  Aligned_cols=19  Identities=21%  Similarity=0.261  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026304           33 IHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i   52 (240)
                      +++|.||+||||||+. +.|
T Consensus         3 ~I~l~G~~GsGKsT~a-~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFA-KLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            7899999999999999 888

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.19  E-value=0.00015  Score=57.47  Aligned_cols=32  Identities=25%  Similarity=0.159  Sum_probs=19.3

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++++..++. .++++|++|+|||||+ +.+.+
T Consensus        14 l~~~~~~~~~~-ki~~vG~~~vGKSsli-~~l~~   45 (190)
T 1m2o_B           14 LASLGLWNKHG-KLLFLGLDNAGKTTLL-HMLKN   45 (190)
T ss_dssp             ----------C-EEEEEESTTSSHHHHH-HHHHH
T ss_pred             HHHhhccCCcc-EEEEECCCCCCHHHHH-HHHhc
Confidence            68889888877 6789999999999999 77765

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.19  E-value=0.0016  Score=57.30  Aligned_cols=25  Identities=20%  Similarity=0.283  Sum_probs=20.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +..-+.|.||.|+|||||+ +.++..
T Consensus        83 ~~~~iLL~GppGtGKT~la-~ala~~  107 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLA-KAVATE  107 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHH-HHHHHH
T ss_pred             CCceEEEECCCCCcHHHHH-HHHHHH
Confidence            3445889999999999999 988763

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.18  E-value=0.00017  Score=56.79  Aligned_cols=26  Identities=19%  Similarity=0.011  Sum_probs=22.6

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ...++.++.|+|++||||||+. +.+.
T Consensus         7 ~~~~~~~i~i~G~~GsGKst~~-~~l~   32 (180)
T 3iij_A            7 EFMLLPNILLTGTPGVGKTTLG-KELA   32 (180)
T ss_dssp             TTCCCCCEEEECSTTSSHHHHH-HHHH
T ss_pred             ccccCCeEEEEeCCCCCHHHHH-HHHH
Confidence            3456788999999999999999 8886

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.18  E-value=0.0029  Score=56.11  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=21.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++.-+.|.||.|+|||+|+ +.++.
T Consensus       147 ~~~~vLL~GppGtGKT~la-~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLA-KAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHH-HHHHH
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHH
Confidence            4568999999999999999 98864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.17  E-value=0.0007  Score=61.43  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=56.2

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      +++-.=+.+.||.|+|||+|. +.+++..  |.++...+....               ...+.......+...+......
T Consensus       212 ~~~prGvLL~GPPGtGKTllA-kAiA~e~--~~~~~~v~~s~l---------------~sk~~Gese~~ir~~F~~A~~~  273 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLA-KAVAATI--GANFIFSPASGI---------------VDKYIGESARIIREMFAYAKEH  273 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHH-HHHHHHH--TCEEEEEEGGGT---------------CCSSSSHHHHHHHHHHHHHHHS
T ss_pred             CCCCCeEEEECCCCCcHHHHH-HHHHHHh--CCCEEEEehhhh---------------ccccchHHHHHHHHHHHHHHhc
Confidence            344455889999999999999 9998632  233322221110               0000000011112222223356


Q ss_pred             cCcEEEEcCccC---------------hH-HHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304          108 KLDVIGIDEAQF---------------FE-DLYEFCCNAA---DHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       108 ~p~lllLDEP~~---------------~~-~i~~~l~~l~---~~~g~tvi~vtHd~~~~  148 (240)
                      .|-+|++||-.+               .. .+..+|.++-   ...+..||.+|..++.+
T Consensus       274 ~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L  333 (437)
T 4b4t_L          274 EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL  333 (437)
T ss_dssp             CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred             CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence            899999999843               11 2344555542   22356888999877654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.17  E-value=0.00018  Score=56.60  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=20.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      |.+++|.|++||||||+. +.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~-~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSS-QLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHH
Confidence            678999999999999999 88865

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.16  E-value=0.00057  Score=72.00  Aligned_cols=144  Identities=17%  Similarity=0.145  Sum_probs=81.0

Q ss_pred             ecCCCC--cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchh------cccCCCeEEEccCcee-cceec
Q 026304           21 DRVGLP--HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKD------TRYAIDSVVTHDGAKL-PCWAL   91 (240)
Q Consensus        21 l~~vsl--~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~------~~~~~~~~v~q~~~~~-~~~~~   91 (240)
                      |+.+.-  -+++|+++.|.|+.|+|||||+++++......|..+..++-...      .+.+   + ..++..+ +..++
T Consensus       720 LD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG---~-~~~~l~i~~~~~i  795 (2050)
T 3cmu_A          720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG---V-DIDNLLCSQPDTG  795 (2050)
T ss_dssp             HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTT---C-CTTTCEEECCSSH
T ss_pred             HHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcC---C-CccceEEecCCCH
Confidence            444442  58899999999999999999994544434444545555432210      1111   1 0011111 11122


Q ss_pred             CcchhHHHhhchhhhccCcEEEEcCccC---------------h-------HHHHHHHHHHHhcCCCEEEEEecChhhhh
Q 026304           92 PELTSFRQKLGDDAYAKLDVIGIDEAQF---------------F-------EDLYEFCCNAADHDGKTVVVAGLDGDYLR  149 (240)
Q Consensus        92 ~~~~~~~~~~~~~l~~~p~lllLDEP~~---------------~-------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~  149 (240)
                      .+.......+..  -..|+++++|+-+.               +       .++...|+.++++.+++||+++|-.....
T Consensus       796 ~~i~~~~r~l~~--~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv~r~~e  873 (2050)
T 3cmu_A          796 EQALEICDALAR--SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIG  873 (2050)
T ss_dssp             HHHHHHHHHHHH--HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHhh--ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccccccch
Confidence            222222111111  14799999999432               1       12444677788778999999999888777


Q ss_pred             cccc------hHHHHHhhccceeeecc
Q 026304          150 RSFG------SVLDIIPLADTVTKLTA  170 (240)
Q Consensus       150 ~~f~------~~~~L~~~ad~i~~l~~  170 (240)
                      ..|+      .-..+...++-.+.|..
T Consensus       874 ~~fgdp~~p~GG~~l~h~a~~Rl~Lrr  900 (2050)
T 3cmu_A          874 VMFGNPETTTGGNALKFYASVRLDIRR  900 (2050)
T ss_dssp             CCSSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred             hhcCCCccccCCceeeeeeeEEEEEEe
Confidence            7774      22244555555555543

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.15  E-value=0.00019  Score=60.26  Aligned_cols=22  Identities=36%  Similarity=0.585  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|+||||||||||. +.|++
T Consensus         2 ~li~I~G~~GSGKSTla-~~La~   23 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMA-IQIAQ   23 (253)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCcCHHHHH-HHHHh
Confidence            47899999999999999 88765

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.15  E-value=0.00018  Score=62.78  Aligned_cols=26  Identities=19%  Similarity=0.193  Sum_probs=22.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+..+.|.||.|+|||||+ +.+...
T Consensus        42 ~~~~~vll~G~~G~GKT~l~-~~~~~~   67 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVA-RLVLRR   67 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHH-HHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHH-HHHHHH
Confidence            56678999999999999999 888653

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.15  E-value=0.0006  Score=62.75  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.+..-+.|.||+|+|||+++ +.++.
T Consensus       235 ~~~~~~vLL~GppGtGKT~lA-raia~  260 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIA-RAVAN  260 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCCCcEEEECcCCCCHHHHH-HHHHH
Confidence            344556899999999999999 99865

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.14  E-value=5.7e-05  Score=66.86  Aligned_cols=39  Identities=13%  Similarity=0.004  Sum_probs=29.2

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.+.+++..|     +++++|.|      +|+|++|+|||||+ +.|.+.
T Consensus        17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLl-n~L~~~   60 (361)
T 2qag_A           17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLI-NSLFLT   60 (361)
T ss_dssp             ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHH-HHHTTC
T ss_pred             eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHH-HHHhCC
Confidence            57777777766     56777776      99999999999999 998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.13  E-value=0.00023  Score=55.76  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|++|+|||||+ +.+.+.
T Consensus         8 ~~i~lvG~~gvGKStL~-~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIF-NALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHTT
T ss_pred             CEEEEECCCCCCHHHHH-HHHhCC
Confidence            36899999999999999 888773

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.12  E-value=5.3e-05  Score=66.06  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             ecCCCCcccCcEE--EEEEcCCCCcHHHHHHHHHcCch
Q 026304           21 DRVGLPHRNSGEI--HVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        21 l~~vsl~i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ++.++..+..|++  +.+.||+|+||||++ +++++..
T Consensus        34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla-~~la~~l   70 (340)
T 1sxj_C           34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTI-VALAREI   70 (340)
T ss_dssp             HHHHHHHHHTTCCCCEEEECSSSSSHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhcCCCceEEEECCCCCCHHHHH-HHHHHHH
Confidence            5667778889988  999999999999999 9998853

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.11  E-value=0.00024  Score=55.90  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|++|+|||||+ +.+.+.
T Consensus         4 kv~ivG~~gvGKStLl-~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLL-QQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHH-HHHTCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            4789999999999999 888874

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.11  E-value=0.00087  Score=56.24  Aligned_cols=26  Identities=27%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+..-+.|.||.|+||||++ +.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la-~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALA-AKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHH-HHHHHH
Confidence            45568899999999999999 988753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.10  E-value=0.00022  Score=56.73  Aligned_cols=31  Identities=19%  Similarity=0.180  Sum_probs=23.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEE
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIA   63 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~   63 (240)
                      .+++|+|++|||||||+ +.|.+. .-.|..+.
T Consensus         7 ~~i~i~G~sGsGKTTl~-~~l~~~l~~~g~~v~   38 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLL-KKLIPALCARGIRPG   38 (174)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEE
T ss_pred             eEEEEEeCCCCCHHHHH-HHHHHhccccCCcee
Confidence            58999999999999999 777664 23344443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.10  E-value=0.0003  Score=57.09  Aligned_cols=24  Identities=21%  Similarity=0.213  Sum_probs=21.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+-+++|.|++||||||+. +.|..
T Consensus         3 ~~~~I~i~G~~GSGKST~~-~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVA-NAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            4578999999999999999 99875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.09  E-value=0.00078  Score=60.96  Aligned_cols=101  Identities=17%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL  109 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p  109 (240)
                      +-.=+.+.||.|+|||+|. +.+++..  |.++..+.....               ...+.......+...+.......|
T Consensus       205 ~prGiLL~GPPGtGKT~la-kAiA~~~--~~~~~~v~~~~l---------------~~~~~Ge~e~~ir~lF~~A~~~aP  266 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLV-KAVANST--KAAFIRVNGSEF---------------VHKYLGEGPRMVRDVFRLARENAP  266 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHH-HHHHHHH--TCEEEEEEGGGT---------------CCSSCSHHHHHHHHHHHHHHHTCS
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHHHh--CCCeEEEecchh---------------hccccchhHHHHHHHHHHHHHcCC
Confidence            3344889999999999999 9998632  333322221110               000000000111222222334689


Q ss_pred             cEEEEcCccC---------------h-HHHHHHHHHH---HhcCCCEEEEEecChhhh
Q 026304          110 DVIGIDEAQF---------------F-EDLYEFCCNA---ADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       110 ~lllLDEP~~---------------~-~~i~~~l~~l---~~~~g~tvi~vtHd~~~~  148 (240)
                      -++++||-.+               . ..+.++|.++   ....+..||++|..++.+
T Consensus       267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L  324 (428)
T 4b4t_K          267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL  324 (428)
T ss_dssp             EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred             CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence            9999999832               1 1233444443   233467888999877654

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.09  E-value=0.0027  Score=53.90  Aligned_cols=26  Identities=19%  Similarity=0.070  Sum_probs=21.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++..+.|.||.|+||||++ +.++..
T Consensus        65 ~~~~~vll~G~~GtGKT~la-~~la~~   90 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVA-LKMAGL   90 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHH-HHHHHH
Confidence            34557999999999999999 888764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.08  E-value=0.00038  Score=55.09  Aligned_cols=33  Identities=18%  Similarity=0.378  Sum_probs=23.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC-chhCCceEEee
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAMI   65 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~~   65 (240)
                      .+++|+|++|||||||+ ..|.. +.-.|.++..+
T Consensus         5 ~~i~i~G~sGsGKTTl~-~~L~~~l~~~g~~v~~i   38 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLM-EKWVAAAVREGWRVGTV   38 (169)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCCHHHHH-HHHHHhhHhcCCeeeEE
Confidence            37899999999999999 65554 33445554443

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.05  E-value=0.00031  Score=56.07  Aligned_cols=24  Identities=33%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.+++|.|+.||||||+. +.|..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~-~~L~~   26 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQC-MNIME   26 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHH-HHHHH
Confidence            6789999999999999999 88865

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.04  E-value=0.0003  Score=55.93  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.|++||||||+. +.|..
T Consensus         2 ~I~i~G~~GsGKsT~~-~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTIS-AEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCccCHHHHH-HHHHH
Confidence            6899999999999999 88875

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00092  Score=60.44  Aligned_cols=102  Identities=17%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcc-hhHHHhhchhhh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPEL-TSFRQKLGDDAY  106 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~-~~~~~~~~~~l~  106 (240)
                      +++-.=+.+.||.|+|||+|. +.+++..  +..+..+.....               ...+ +.+. ..+...+.....
T Consensus       213 i~~prGvLLyGPPGTGKTlLA-kAiA~e~--~~~fi~v~~s~l---------------~sk~-vGesek~ir~lF~~Ar~  273 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLA-KAVANQT--SATFLRIVGSEL---------------IQKY-LGDGPRLCRQIFKVAGE  273 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHH-HHHHHHH--TCEEEEEESGGG---------------CCSS-SSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCceECCCCchHHHHH-HHHHHHh--CCCEEEEEHHHh---------------hhcc-CchHHHHHHHHHHHHHh
Confidence            333345899999999999999 9998632  222222211110               0000 1111 111122222234


Q ss_pred             ccCcEEEEcCccC----------------hHHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304          107 AKLDVIGIDEAQF----------------FEDLYEFCCNAA---DHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       107 ~~p~lllLDEP~~----------------~~~i~~~l~~l~---~~~g~tvi~vtHd~~~~  148 (240)
                      ..|-+|++||..+                ...+..+|.++-   ...+..||.+|..++.+
T Consensus       274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L  334 (437)
T 4b4t_I          274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL  334 (437)
T ss_dssp             TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred             cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence            6899999999843                112444454442   22456788999887665

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.04  E-value=0.00066  Score=61.53  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=55.1

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      +++-.=+.+.||.|+|||+|. +.+++..  |..+..++....               ...+.......+...+......
T Consensus       212 ~~~prGvLLyGPPGTGKTllA-kAiA~e~--~~~f~~v~~s~l---------------~~~~vGese~~ir~lF~~A~~~  273 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLA-RACAAQT--NATFLKLAAPQL---------------VQMYIGEGAKLVRDAFALAKEK  273 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHH-HHHHHHH--TCEEEEEEGGGG---------------CSSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeeEEECcCCCCHHHHH-HHHHHHh--CCCEEEEehhhh---------------hhcccchHHHHHHHHHHHHHhc
Confidence            444455889999999999999 9998732  233322221110               0000000001111222222346


Q ss_pred             cCcEEEEcCccC---------------h-HHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304          108 KLDVIGIDEAQF---------------F-EDLYEFCCNAA---DHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       108 ~p~lllLDEP~~---------------~-~~i~~~l~~l~---~~~g~tvi~vtHd~~~~  148 (240)
                      .|-+|++||-.+               . ..+..+|..+-   ...+..||.+|..++.+
T Consensus       274 aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L  333 (434)
T 4b4t_M          274 APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL  333 (434)
T ss_dssp             CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred             CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence            899999999832               0 12334444442   22456788899877654

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.04  E-value=0.00032  Score=60.03  Aligned_cols=27  Identities=22%  Similarity=0.117  Sum_probs=23.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .-..|.++.|.||+||||||+. +.+..
T Consensus        29 ~~~~~~livl~G~sGsGKSTla-~~L~~   55 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLR-SAIFE   55 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHH-HHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4456889999999999999999 87753

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.01  E-value=0.00039  Score=55.59  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.+++|.|+.||||||+. +.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~-~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQA-TLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence            4789999999999999999 88865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.01  E-value=0.00032  Score=58.38  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -+++|.||+||||||+. +.|+.
T Consensus        10 ~~i~i~G~~GsGKsTla-~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVS-RGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            48999999999999999 98873

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.01  E-value=0.00032  Score=55.22  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+..+.|+|++||||||+. +.|+.
T Consensus         4 ~~~~i~l~G~~GsGKst~a-~~La~   27 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVG-SQLAK   27 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHH
Confidence            3568999999999999999 88863

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.00  E-value=0.00041  Score=55.21  Aligned_cols=24  Identities=33%  Similarity=0.238  Sum_probs=21.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+++|+|++||||||+. +.|...
T Consensus         8 ~~~I~i~G~~GsGKST~~-~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVA-ALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHH-HHHHHT
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHHC
Confidence            468999999999999999 988764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.00  E-value=0.00039  Score=54.13  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.|.|++||||||+. +.|..
T Consensus         3 ~~I~i~G~~GsGKST~a-~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWA-REFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEecCCCCCHHHHH-HHHHh
Confidence            57899999999999999 88864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.99  E-value=0.00034  Score=54.77  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|++||||||+. +.|+.
T Consensus         6 ~i~i~G~~GsGKsTla-~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLA-RALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEEcCCCCCHHHHH-HHHHH
Confidence            5899999999999999 88864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.98  E-value=0.002  Score=48.88  Aligned_cols=25  Identities=12%  Similarity=-0.000  Sum_probs=20.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.-+.|.||.|+|||++. +.+...
T Consensus        26 ~~~~vll~G~~GtGKt~lA-~~i~~~   50 (143)
T 3co5_A           26 RTSPVFLTGEAGSPFETVA-RYFHKN   50 (143)
T ss_dssp             CSSCEEEEEETTCCHHHHH-GGGCCT
T ss_pred             CCCcEEEECCCCccHHHHH-HHHHHh
Confidence            4456889999999999999 888753

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.98  E-value=0.00086  Score=57.34  Aligned_cols=25  Identities=20%  Similarity=0.017  Sum_probs=20.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ....+.|.||.|+|||+|. +.++..
T Consensus        35 ~p~~lLl~GppGtGKT~la-~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQC-ELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHH-HHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHHH
Confidence            3346788899999999999 998763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.97  E-value=0.00035  Score=56.13  Aligned_cols=20  Identities=40%  Similarity=0.517  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .+.|+||+|||||||+ +.|.
T Consensus         3 pIVi~GPSG~GK~Tl~-~~L~   22 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLL-KKLF   22 (186)
T ss_dssp             CEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            3789999999999999 7664

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.96  E-value=0.00039  Score=55.02  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=22.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.+++|+|+.||||||+. +.|+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~-~~La~   31 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQC-EKIVQ   31 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            46789999999999999999 88864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.96  E-value=0.00039  Score=55.81  Aligned_cols=26  Identities=23%  Similarity=0.319  Sum_probs=22.8

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..+|.+++|.|+.||||||+. +.|..
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~-~~L~~   32 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQS-KLLVE   32 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHH-HHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHH-HHHHH
Confidence            356889999999999999999 88865

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.96  E-value=0.00045  Score=54.41  Aligned_cols=24  Identities=29%  Similarity=0.257  Sum_probs=20.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++.+++|.|++||||||+. +.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a-~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQC-ARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            3678999999999999998 87753

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=96.96  E-value=0.00067  Score=62.37  Aligned_cols=144  Identities=15%  Similarity=0.063  Sum_probs=80.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhC-CceEEeeccch-----hccc--CCCeEEEc-----------------
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDN-GRNIAMIKSSK-----DTRY--AIDSVVTH-----------------   81 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~-g~~i~~~~~~~-----~~~~--~~~~~v~q-----------------   81 (240)
                      -+.+|+++.|.|+.|+|||||+++++...... |..+..++-..     ..|.  ...++-.+                 
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~  317 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQ  317 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHH
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCChhhccccccCCCCHHHHHH
Confidence            48899999999999999999985655544333 66665543211     0010  00000000                 


Q ss_pred             -------cCcee-cceec-CcchhHHHhhchh-hhccCcEEEEcCccC-------------hHHHHHHHHHHHhcCCCEE
Q 026304           82 -------DGAKL-PCWAL-PELTSFRQKLGDD-AYAKLDVIGIDEAQF-------------FEDLYEFCCNAADHDGKTV  138 (240)
Q Consensus        82 -------~~~~~-~~~~~-~~~~~~~~~~~~~-l~~~p~lllLDEP~~-------------~~~i~~~l~~l~~~~g~tv  138 (240)
                             ...++ ..... .....+...+... .-.+|+++++|=-+.             ..+++..|+.++++.+++|
T Consensus       318 ~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~v  397 (503)
T 1q57_A          318 WFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVL  397 (503)
T ss_dssp             HHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeE
Confidence                   00000 00000 0111111111111 124799999995432             1257778888889889999


Q ss_pred             EEEecChhhhh------------cccchHHHHHhhccceeeecc
Q 026304          139 VVAGLDGDYLR------------RSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       139 i~vtHd~~~~~------------~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      |+++|-...-.            ..+..+..+...||-|+.|..
T Consensus       398 i~~~q~~r~~~~~~~~~~~~p~l~dlr~s~~ie~~aD~vi~l~r  441 (503)
T 1q57_A          398 VVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER  441 (503)
T ss_dssp             EEEEECCCCSSSSCSTTCCCCCSSSCSSSSHHHHHCSEEEEEEE
T ss_pred             EEEEcCCchhccCccccCCCCChhhhccchHhhecCcEEEEEEe
Confidence            99999975110            012234567788999999976

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=96.92  E-value=0.0031  Score=51.01  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=26.7

Q ss_pred             cCcEEEEcCccCh---H-------HHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          108 KLDVIGIDEAQFF---E-------DLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       108 ~p~lllLDEP~~~---~-------~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ...+|++||.+..   .       +++..+..-.. .+..||++|++.+.+
T Consensus        87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~-~~~~iil~tq~~~~l  136 (199)
T 2r2a_A           87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRH-QGIDIFVLTQGPKLL  136 (199)
T ss_dssp             TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTT-TTCEEEEEESCGGGB
T ss_pred             CceEEEEEChhhhccCccccchhHHHHHHHHhcCc-CCeEEEEECCCHHHH
Confidence            4789999999663   1       33333333333 578999999997655

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.92  E-value=0.0088  Score=51.47  Aligned_cols=22  Identities=32%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..+.|.||.|+||||++ +.++.
T Consensus        56 ~~vll~G~~GtGKT~la-~~ia~   77 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLA-NIISY   77 (338)
T ss_dssp             CCEEEECSTTSSHHHHH-HHHHH
T ss_pred             CeEEEECcCCCCHHHHH-HHHHH
Confidence            35899999999999999 98864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.92  E-value=0.0011  Score=52.56  Aligned_cols=21  Identities=24%  Similarity=0.230  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|++|+|||||+ +.+.|
T Consensus         8 kv~lvG~~~vGKSsL~-~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLA-NIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5899999999999999 77765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.91  E-value=0.00045  Score=55.46  Aligned_cols=26  Identities=31%  Similarity=0.409  Sum_probs=22.4

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..+|.+++|.|+.||||||+. +.|..
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~-~~L~~   31 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQS-RKLVE   31 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHH-HHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            356889999999999999999 88864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.88  E-value=0.00023  Score=57.31  Aligned_cols=22  Identities=27%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++|.|++||||||++ +.|...
T Consensus         2 ~I~i~G~~GsGKsTl~-~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLV-EKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHH-HHHHHH
T ss_pred             EEEEEcCCCCCHHHHH-HHHHHH
Confidence            6899999999999999 888653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.86  E-value=0.00053  Score=53.93  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.|++||||||+. +.|..
T Consensus         3 ~I~i~G~~GsGKsT~~-~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVL-AKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 88865

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.86  E-value=0.0051  Score=55.83  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=26.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC-chhCCceEEee
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAMI   65 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~~   65 (240)
                      ++.+++++|++|+||||++ ..|+. +.-.|+++...
T Consensus        99 ~p~vIlivG~~G~GKTTt~-~kLA~~l~~~G~kVllv  134 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTV-AKLARYFQKRGYKVGVV  134 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHH-HHHHHHHHTTTCCEEEE
T ss_pred             CCeEEEEECcCCCCHHHHH-HHHHHHHHHCCCeEEEE
Confidence            4789999999999999998 55544 34456666544

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.85  E-value=0.00035  Score=55.43  Aligned_cols=27  Identities=22%  Similarity=0.228  Sum_probs=22.9

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.+.+++|.|+.||||||+. +.|..
T Consensus         8 ~~~~~~~I~l~G~~GsGKsT~a-~~L~~   34 (199)
T 2bwj_A            8 DLRKCKIIFIIGGPGSGKGTQC-EKLVE   34 (199)
T ss_dssp             HHHHSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHH-HHHHH
Confidence            3456789999999999999999 88864

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.85  E-value=0.0012  Score=60.27  Aligned_cols=103  Identities=16%  Similarity=0.116  Sum_probs=55.4

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      +++-.=+.+.||.|+|||+|. +.+++..  +..+.......               +...+.......+...+......
T Consensus       240 i~pprGILLyGPPGTGKTlLA-kAiA~e~--~~~fi~vs~s~---------------L~sk~vGesek~ir~lF~~Ar~~  301 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCA-RAVANRT--DATFIRVIGSE---------------LVQKYVGEGARMVRELFEMARTK  301 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHH-HHHHHHH--TCEEEEEEGGG---------------GCCCSSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCceEeeCCCCCcHHHHH-HHHHhcc--CCCeEEEEhHH---------------hhcccCCHHHHHHHHHHHHHHhc
Confidence            344455889999999999999 9998632  22222221111               00000000001122222223356


Q ss_pred             cCcEEEEcCccC----------------hHHHHHHHHHHH---hcCCCEEEEEecChhhh
Q 026304          108 KLDVIGIDEAQF----------------FEDLYEFCCNAA---DHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       108 ~p~lllLDEP~~----------------~~~i~~~l~~l~---~~~g~tvi~vtHd~~~~  148 (240)
                      .|-+|++||-.+                ...+..+|.++-   ...+..||.+|..++.+
T Consensus       302 aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L  361 (467)
T 4b4t_H          302 KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL  361 (467)
T ss_dssp             CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred             CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence            899999999843                112444555542   22356778888876654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.84  E-value=0.0024  Score=51.02  Aligned_cols=20  Identities=15%  Similarity=0.270  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++.|+|+.||||||+. ..+.
T Consensus         1 ~ilV~Gg~~SGKS~~A-~~la   20 (180)
T 1c9k_A            1 MILVTGGARSGKSRHA-EALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHH-HHHH
T ss_pred             CEEEECCCCCcHHHHH-HHHH
Confidence            3689999999999998 5554

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.80  E-value=0.00058  Score=56.21  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .++|+|++|+|||||+ +.|.|..
T Consensus        31 ~i~lvG~~g~GKStli-n~l~g~~   53 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATG-NSILGRK   53 (239)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHTSC
T ss_pred             EEEEECCCCCCHHHHH-HHHcCCC
Confidence            6899999999999999 9998853

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.79  E-value=0.0016  Score=63.29  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=54.7

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      +.+-.-+.|.||.|+|||+|. +.+++..  |..+...+....               ...+.......+...+......
T Consensus       235 ~~~p~GILL~GPPGTGKT~LA-raiA~el--g~~~~~v~~~~l---------------~sk~~gese~~lr~lF~~A~~~  296 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIA-RAVANET--GAFFFLINGPEI---------------MSKLAGESESNLRKAFEEAEKN  296 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHH-HHHHTTT--TCEEEEEEHHHH---------------HSSCTTHHHHHHHHHHHHHTTS
T ss_pred             CCCCCeEEEECCCCCCHHHHH-HHHHHHh--CCeEEEEEhHHh---------------hcccchHHHHHHHHHHHHHHHc
Confidence            344445889999999999999 9998632  222222211100               0000000001112222223346


Q ss_pred             cCcEEEEcCccC------------hH----HHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          108 KLDVIGIDEAQF------------FE----DLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       108 ~p~lllLDEP~~------------~~----~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      .|-+|++||-.+            ..    +++..+..+....+..||.+|..++.+
T Consensus       297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L  353 (806)
T 3cf2_A          297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI  353 (806)
T ss_dssp             CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred             CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence            899999999843            11    233333343333467788888877554

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.79  E-value=0.00041  Score=54.33  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=16.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++.++.|.|++||||||+. +.|.
T Consensus         4 ~~~~I~l~G~~GsGKST~a-~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTA-HTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHH
Confidence            5678999999999999999 8885

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.75  E-value=0.00074  Score=54.87  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|-+++|+|+.||||||+. +.|+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a-~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQA-PNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHH
Confidence            5678999999999999999 88864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.75  E-value=0.00063  Score=54.31  Aligned_cols=21  Identities=38%  Similarity=0.624  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.|++||||||+. +.|+.
T Consensus         4 ~i~i~G~~GsGKst~~-~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVA-RRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            8999999999999999 98875

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.74  E-value=0.00095  Score=52.41  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ...+++|.|+.||||||+. +.|..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~-~~L~~   28 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQC-ANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred             cCcEEEEECCCCCCHHHHH-HHHHH
Confidence            3568999999999999998 88754

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.71  E-value=0.00094  Score=61.66  Aligned_cols=24  Identities=33%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ...+.|.||.|+||||++ +.++..
T Consensus        77 ~~~lLL~GppGtGKTtla-~~la~~  100 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAA-HLVAQE  100 (516)
T ss_dssp             CSEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CcEEEEECCCCCCHHHHH-HHHHHH
Confidence            468999999999999999 988753

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.71  E-value=0.00064  Score=60.89  Aligned_cols=29  Identities=17%  Similarity=0.091  Sum_probs=25.1

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.+..|..++|+|+||+|||||+ +.|.|.
T Consensus        17 g~i~~~~kvgIVG~pnvGKSTL~-n~Ltg~   45 (396)
T 2ohf_A           17 GRFGTSLKIGIVGLPNVGKSTFF-NVLTNS   45 (396)
T ss_dssp             CCSSSCCCEEEECCSSSSHHHHH-HHHHC-
T ss_pred             hhccCCCEEEEECCCCCCHHHHH-HHHHCC
Confidence            35677888999999999999999 999885

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.00056  Score=56.36  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHH
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      +.+|+.+++.||+||||||++ ..+
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~-~~~   96 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQV-PQF   96 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHH-HHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhH-HHH
Confidence            557999999999999999987 544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.69  E-value=0.0011  Score=60.33  Aligned_cols=27  Identities=30%  Similarity=0.390  Sum_probs=22.0

Q ss_pred             ccCcEE--EEEEcCCCCcHHHHHHHHHcCc
Q 026304           28 RNSGEI--HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        28 i~~Ge~--~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +..|.+  +.|.||.|+|||||+ +.|+..
T Consensus        45 i~~~~~~~vLL~GppGtGKTtlA-r~ia~~   73 (447)
T 3pvs_A           45 IEAGHLHSMILWGPPGTGKTTLA-EVIARY   73 (447)
T ss_dssp             HHHTCCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             HHcCCCcEEEEECCCCCcHHHHH-HHHHHH
Confidence            444554  899999999999999 999763

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.69  E-value=0.0011  Score=52.89  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=21.4

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      -....+++|.|+.||||||+. +.|.
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~-~~L~   36 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQC-EKLV   36 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHH-HHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHH-HHHH
Confidence            345678999999999999998 8776

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.68  E-value=0.00076  Score=59.73  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      +++|+|++|||||||+ +.+.|..
T Consensus       181 ~V~lvG~~naGKSTLl-n~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLF-NSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHH-HHHHCC-
T ss_pred             EEEEECCCCCCHHHHH-HHHHCCC
Confidence            3999999999999999 9998863

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.66  E-value=0.00091  Score=52.64  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.|+.||||||+. +.+..
T Consensus         2 ~I~l~G~~GsGKsT~~-~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQA-KKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 88864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.66  E-value=0.00086  Score=56.47  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|++|||||||+ +.+.|.
T Consensus         5 ~i~lvG~~g~GKTTL~-n~l~g~   26 (271)
T 3k53_A            5 TVALVGNPNVGKTTIF-NALTGL   26 (271)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            5899999999999999 999885

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.66  E-value=0.00084  Score=54.87  Aligned_cols=25  Identities=36%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.+++|.|+.||||||+. +.|+.
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a-~~La~   29 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVS-SRITT   29 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHH-HHHHH
Confidence            35678999999999999999 88863

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.66  E-value=0.00077  Score=60.95  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|+||+|||||+ +.+.|.
T Consensus       181 ~kvaivG~~gvGKSTLl-n~l~g~  203 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLF-NAILNK  203 (439)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred             ceEEEECCCCCCHHHHH-HHHhCC
Confidence            47999999999999999 999885

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.65  E-value=0.00091  Score=51.81  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+|+.||||||+. +.|+.
T Consensus         8 ~~i~l~G~~GsGKSTva-~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLA-QELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHH
Confidence            58999999999999999 88864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.64  E-value=0.00075  Score=54.88  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=20.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.+++|+|++||||||+. +.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~-~~La~   27 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQC-ELIKT   27 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4567999999999999999 88864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.63  E-value=0.00097  Score=53.78  Aligned_cols=21  Identities=38%  Similarity=0.289  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+||.||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQA-EQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4789999999999999 88853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.61  E-value=0.0011  Score=53.07  Aligned_cols=24  Identities=29%  Similarity=0.331  Sum_probs=20.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+-+++|+|+.||||||+. +.|..
T Consensus        19 ~~~~I~l~G~~GsGKST~a-~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQA-VKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4568999999999999999 88864

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.59  E-value=0.0013  Score=55.21  Aligned_cols=25  Identities=16%  Similarity=0.159  Sum_probs=21.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.++.|.|++||||||+. +.|..
T Consensus         2 ~~~~lIvl~G~pGSGKSTla-~~La~   26 (260)
T 3a4m_A            2 GDIMLIILTGLPGVGKSTFS-KNLAK   26 (260)
T ss_dssp             -CCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHH-HHHHH
Confidence            35678999999999999999 88865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.59  E-value=0.00091  Score=51.80  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|+|+.||||||+. +.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a-~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVG-RELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHH
Confidence            36899999999999999 88864

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.58  E-value=0.0012  Score=51.00  Aligned_cols=21  Identities=24%  Similarity=0.263  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.|+.||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVG-SLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            5899999999999999 88864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.56  E-value=0.0012  Score=53.23  Aligned_cols=23  Identities=17%  Similarity=0.254  Sum_probs=20.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      --+++|+|+.||||||+. +.+..
T Consensus        12 ~~iIgltG~~GSGKSTva-~~L~~   34 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVC-EILKN   34 (192)
T ss_dssp             EEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            358999999999999999 88864

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.56  E-value=0.0085  Score=51.28  Aligned_cols=96  Identities=13%  Similarity=0.040  Sum_probs=48.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCcE
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDV  111 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~l  111 (240)
                      ..+.+.||.|+||||++ +.++...  +.++..++...                .....+.+...-... ......++.+
T Consensus        49 ~~~L~~G~~G~GKT~la-~~la~~l--~~~~~~i~~~~----------------~~~~~i~~~~~~~~~-~~~~~~~~~v  108 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVA-KALCHDV--NADMMFVNGSD----------------CKIDFVRGPLTNFAS-AASFDGRQKV  108 (324)
T ss_dssp             SEEEECSSTTSSHHHHH-HHHHHHT--TEEEEEEETTT----------------CCHHHHHTHHHHHHH-BCCCSSCEEE
T ss_pred             eEEEeeCcCCCCHHHHH-HHHHHHh--CCCEEEEcccc----------------cCHHHHHHHHHHHHh-hcccCCCCeE
Confidence            36777788999999999 8886422  32322221100                000000000000000 0011237899


Q ss_pred             EEEcCccCh--HHHHHHHHHHHhc--CCCEEEEEecChhh
Q 026304          112 IGIDEAQFF--EDLYEFCCNAADH--DGKTVVVAGLDGDY  147 (240)
Q Consensus       112 llLDEP~~~--~~i~~~l~~l~~~--~g~tvi~vtHd~~~  147 (240)
                      |++||....  ....+.|.++.++  .+..+|++|.+...
T Consensus       109 liiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~  148 (324)
T 3u61_B          109 IVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDG  148 (324)
T ss_dssp             EEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred             EEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence            999999763  3333333333221  35678888877653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.55  E-value=0.0012  Score=53.37  Aligned_cols=20  Identities=45%  Similarity=0.311  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++|+||.||||||+. +.|.
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQG-ERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            4789999999999999 8885

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.50  E-value=0.0013  Score=54.74  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      --+++|.|++||||||+. +.|..
T Consensus        22 ~~iI~I~G~~GSGKST~a-~~L~~   44 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVC-AKIVQ   44 (252)
T ss_dssp             CEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             cEEEEEECCCCCCHHHHH-HHHHH
Confidence            358999999999999999 88754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.49  E-value=0.00097  Score=52.40  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|+|+.||||||+. +.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a-~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIG-RRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHH-HHHHH
T ss_pred             CeEEEECCCCCCHHHHH-HHHHH
Confidence            36899999999999998 88764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.48  E-value=0.0013  Score=51.41  Aligned_cols=24  Identities=38%  Similarity=0.425  Sum_probs=20.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .-.++++|++|+|||||+ +.+.+-
T Consensus        16 ~~ki~ivG~~~vGKSsL~-~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLL-KQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHH-HHHCCS
T ss_pred             ceEEEEECCCCCCHHHHH-HHHhcC
Confidence            346899999999999999 888764

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.46  E-value=0.0014  Score=49.82  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.|.
T Consensus         4 ki~~vG~~~~GKSsli-~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALA-RIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHH-HHHCCC
T ss_pred             EEEEECCCCCCHHHHH-HHHcCc
Confidence            4789999999999999 888764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.44  E-value=0.0018  Score=53.69  Aligned_cols=25  Identities=16%  Similarity=0.212  Sum_probs=21.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++-+++|+||.||||||+. +.|..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a-~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQS-LNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            46779999999999999999 88753

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0014  Score=51.48  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+.
T Consensus        50 ~i~vvG~~g~GKSsll-~~l~~~   71 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLL-TLLTTD   71 (193)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            7899999999999999 888764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.42  E-value=0.0016  Score=53.21  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.|++||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQG-NLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5789999999999999 88764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.38  E-value=0.0017  Score=49.73  Aligned_cols=22  Identities=23%  Similarity=0.214  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus         6 ki~i~G~~~vGKSsl~-~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLA-SLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHCC
T ss_pred             EEEEECCCCccHHHHH-HHHhcC
Confidence            4899999999999999 888764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.37  E-value=0.0019  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        11 ~i~v~G~~~~GKssl~-~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLL-LRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHH-HHHCSC
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5789999999999999 888764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.36  E-value=0.0015  Score=49.68  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~-~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMI-QRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHC
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            4789999999999999 777653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.0018  Score=49.27  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         5 ~i~v~G~~~~GKssli-~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLV-LRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHTC
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            5789999999999999 877763

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.35  E-value=0.0033  Score=58.88  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=26.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeec
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIK   66 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~   66 (240)
                      .+.++.|.||.|+||||++ +.+... .-.|..+....
T Consensus       203 ~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTT-KAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred             hCCEEEEEcCCCCCHHHHH-HHHHHHHHhcCCeEEEec
Confidence            3679999999999999999 666553 34566555543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.35  E-value=0.0013  Score=50.98  Aligned_cols=24  Identities=38%  Similarity=0.313  Sum_probs=20.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.-.++++|++|+|||||+ +.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli-~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTIL-YRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred             CccEEEEECCCCCCHHHHH-HHHhc
Confidence            4557999999999999999 87764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.33  E-value=0.0022  Score=54.55  Aligned_cols=23  Identities=17%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ..-+++|.|++||||||+. +.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva-~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVA-QRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHH-HHHH
T ss_pred             CCEEEEEECCCCCCHHHHH-HHHH
Confidence            3468999999999999999 8887

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.33  E-value=0.0016  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         3 ki~v~G~~~~GKSsli-~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLF-NRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            4789999999999999 777653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.32  E-value=0.0019  Score=49.24  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+.
T Consensus         4 ki~ivG~~~~GKSsli-~~l~~~   25 (169)
T 3q85_A            4 KVMLVGESGVGKSTLA-GTFGGL   25 (169)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHCC
T ss_pred             EEEEECCCCCCHHHHH-HHHHhc
Confidence            3789999999999999 888654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.32  E-value=0.0025  Score=52.30  Aligned_cols=30  Identities=13%  Similarity=0.153  Sum_probs=24.0

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+-.+.+..++.|+||.||||||.. +.|+.
T Consensus        22 ~~~~~~k~kiI~llGpPGsGKgTqa-~~L~~   51 (217)
T 3umf_A           22 TDQKLAKAKVIFVLGGPGSGKGTQC-EKLVQ   51 (217)
T ss_dssp             --CCTTSCEEEEEECCTTCCHHHHH-HHHHH
T ss_pred             cchhccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            3445677889999999999999998 77764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.31  E-value=0.0016  Score=49.12  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         5 ~i~v~G~~~~GKssl~-~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALT-IQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            4789999999999999 777653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.31  E-value=0.0017  Score=49.10  Aligned_cols=21  Identities=19%  Similarity=0.208  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         5 ~i~v~G~~~~GKSsli-~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALT-VQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5799999999999999 76654

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.30  E-value=0.0021  Score=56.99  Aligned_cols=62  Identities=11%  Similarity=-0.028  Sum_probs=41.6

Q ss_pred             cCcEEEEcCccC---------hHHHHHHHHHHHhcCCCEEEEEecChhhhhccc--chHHHHHhhccceeeecc
Q 026304          108 KLDVIGIDEAQF---------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSF--GSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       108 ~p~lllLDEP~~---------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f--~~~~~L~~~ad~i~~l~~  170 (240)
                      .|.++++||...         ...+.+++++.++ .|..++++||.++.+...-  +....+...|+..+++..
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~  334 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ  334 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence            578999999843         1235566666665 7999999999998763210  013456667777777764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.29  E-value=0.013  Score=53.05  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|++|+|||||+ +.+.|-
T Consensus        25 ~V~lvG~~nvGKSTL~-n~l~~~   46 (456)
T 4dcu_A           25 VVAIVGRPNVGKSTIF-NRIAGE   46 (456)
T ss_dssp             EEEEECSSSSSHHHHH-HHHEEE
T ss_pred             EEEEECCCCCcHHHHH-HHHhCC
Confidence            7999999999999999 999874

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.29  E-value=0.0079  Score=58.85  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      ..+.|+||+|+|||++. +.|+....
T Consensus       589 ~~vLl~Gp~GtGKT~lA-~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELA-KTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHH-HHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHHhc
Confidence            57899999999999999 99987644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.29  E-value=0.0021  Score=54.45  Aligned_cols=22  Identities=23%  Similarity=0.291  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|++|+|||||+ +.+.|.
T Consensus         5 kI~lvG~~nvGKSTL~-n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLF-NLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHCC
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            5899999999999999 999885

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.27  E-value=0.0019  Score=52.38  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|-+++|+|+.||||||+. +.|+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~a-~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQC-EFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            3567899999999999999 88864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.27  E-value=0.0018  Score=49.01  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         6 ~i~v~G~~~~GKssl~-~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALT-LQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            4789999999999999 77765

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.26  E-value=0.0019  Score=49.23  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         8 ~i~v~G~~~~GKSsli-~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIM-WRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            4789999999999999 777664

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.26  E-value=0.0011  Score=56.80  Aligned_cols=24  Identities=21%  Similarity=0.201  Sum_probs=17.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++-+++|.||+||||||+. +.+..
T Consensus         4 ~~~iIgItG~sGSGKSTva-~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVK-HTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHH-HHHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHH
Confidence            4558999999999999999 88765

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.25  E-value=0.0018  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         5 ~i~v~G~~~~GKssli-~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLL-VRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHC
T ss_pred             EEEEECcCCCCHHHHH-HHHHhC
Confidence            4789999999999999 777654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.25  E-value=0.0019  Score=49.12  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         5 ~i~v~G~~~~GKssli-~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIV-LRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            4789999999999999 777653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.25  E-value=0.0019  Score=50.62  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|+.|+|||||+ +.+.+-
T Consensus        24 ~~i~v~G~~~~GKSsli-~~l~~~   46 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFI-NSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHH-HHHHTC
T ss_pred             CEEEEECCCCCCHHHHH-HHHhCC
Confidence            46899999999999999 877764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.25  E-value=0.0022  Score=51.85  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|.|+.||||||+. +.|..
T Consensus         2 ~I~l~G~~GsGKsT~a-~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQA-QFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4789999999999999 88864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.25  E-value=0.0019  Score=49.76  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        10 ~i~v~G~~~~GKSsli-~~l~~~   31 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLM-HRYVND   31 (182)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            5899999999999999 777653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.25  E-value=0.0019  Score=49.23  Aligned_cols=22  Identities=27%  Similarity=0.333  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         8 ~i~v~G~~~~GKssli-~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLV-LRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHHC
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            5789999999999999 777653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.23  E-value=0.002  Score=50.26  Aligned_cols=22  Identities=18%  Similarity=0.237  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        25 ~i~v~G~~~~GKSsli-~~l~~~   46 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLL-NALFNR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            6899999999999999 877664

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.23  E-value=0.0027  Score=48.80  Aligned_cols=25  Identities=40%  Similarity=0.458  Sum_probs=21.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.-.++++|+.|+|||||+ +.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~-~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLL-DAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHH-HHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHhCC
Confidence            4457899999999999999 877663

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.23  E-value=0.0029  Score=56.88  Aligned_cols=28  Identities=25%  Similarity=0.137  Sum_probs=23.3

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.-....++.|+|++||||||+. +.+..
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla-~~L~~  280 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFI-QEHLV  280 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHH-HHHTG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHH-HHHHH
Confidence            44456789999999999999999 88754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.22  E-value=0.0021  Score=50.05  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         3 ki~v~G~~~~GKSsli-~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLI-YRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHSC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCc
Confidence            3789999999999999 877764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.20  E-value=0.002  Score=48.83  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         5 ki~v~G~~~~GKssli-~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALT-VQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 77765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.20  E-value=0.0026  Score=53.99  Aligned_cols=22  Identities=27%  Similarity=0.267  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.|+|++||||||+. +.|..
T Consensus         3 ~~I~l~G~~GsGKST~a-~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWA-REFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            57899999999999999 88764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.20  E-value=0.0021  Score=49.44  Aligned_cols=22  Identities=18%  Similarity=0.320  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         9 ~i~v~G~~~~GKSsli-~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLM-NRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            4799999999999999 777653

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.17  E-value=0.0031  Score=51.53  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -+|.++.|.|+.||||||++ +.|..
T Consensus         4 m~g~~i~~eG~~gsGKsT~~-~~l~~   28 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNR-DYLAE   28 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHH-HHHHH
Confidence            46899999999999999999 87754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.17  E-value=0.0021  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        11 ~i~v~G~~~~GKssli-~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALT-IQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            5899999999999999 777654

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.16  E-value=0.0027  Score=53.86  Aligned_cols=25  Identities=20%  Similarity=0.272  Sum_probs=22.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      ...+.|.||+|+||||++ +.+++..
T Consensus        47 ~~~~ll~G~~GtGKt~la-~~la~~~   71 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELA-KTLAATL   71 (311)
T ss_dssp             SEEEEEESCSSSSHHHHH-HHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHH-HHHHHHH
Confidence            468999999999999999 9998854

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.13  E-value=0.0029  Score=51.85  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+..+.|+|+.||||||+. +.|+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a-~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQA-PKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4568999999999999999 88864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.12  E-value=0.0033  Score=55.12  Aligned_cols=24  Identities=21%  Similarity=0.307  Sum_probs=20.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++.+++|+||+|||||||. ..|+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa-~~LA~   62 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLS-IDLAA   62 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHH-HHHHT
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHH
Confidence            5679999999999999999 66654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=96.12  E-value=0.034  Score=53.54  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      .+.+.||.|+|||++. +.++....
T Consensus       523 ~~Ll~Gp~GtGKT~lA-~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELA-RALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHhc
Confidence            6899999999999999 99987543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.12  E-value=0.0032  Score=51.21  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=19.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .|..++|+||+|||||||.+.++
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            57899999999999999993433

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.12  E-value=0.0081  Score=58.76  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .-+.|+||+|+||||++ +.++...
T Consensus       192 ~~vlL~G~pG~GKT~la-~~la~~l  215 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIV-EGLAQRI  215 (854)
T ss_dssp             CCCEEEECTTSCHHHHH-HHHHHHH
T ss_pred             CceEEEcCCCCCHHHHH-HHHHHHH
Confidence            35789999999999999 9888753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.11  E-value=0.0028  Score=48.73  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus         8 ki~v~G~~~~GKssl~-~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLT-TCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHGG
T ss_pred             EEEEECcCCCCHHHHH-HHHHhC
Confidence            4789999999999999 777664

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.10  E-value=0.0024  Score=49.88  Aligned_cols=22  Identities=45%  Similarity=0.564  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.|.
T Consensus        16 ki~vvG~~~~GKssL~-~~l~~~   37 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNL-KWIYSK   37 (198)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHhh
Confidence            5789999999999999 998874

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.10  E-value=0.0025  Score=49.48  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         6 ki~v~G~~~~GKSsli-~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALT-IQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            4789999999999999 777653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.09  E-value=0.0025  Score=48.38  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         8 ~i~v~G~~~~GKssli-~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLV-LRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4789999999999999 77765

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.09  E-value=0.0027  Score=50.47  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.|.
T Consensus        25 ki~vvG~~~vGKSsLi-~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLA-GTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHTCCE
T ss_pred             EEEEECCCCCCHHHHH-HHHHhc
Confidence            6899999999999999 888763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.08  E-value=0.0025  Score=49.80  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus         9 ki~v~G~~~~GKSsli-~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIV-LRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            5899999999999999 777664

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.07  E-value=0.0026  Score=48.54  Aligned_cols=23  Identities=39%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .=.++++|+.|+|||||+ +.+.+
T Consensus         7 ~~~i~v~G~~~~GKssl~-~~l~~   29 (171)
T 1upt_A            7 EMRILILGLDGAGKTTIL-YRLQV   29 (171)
T ss_dssp             CEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ccEEEEECCCCCCHHHHH-HHHhc
Confidence            346899999999999999 77754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.07  E-value=0.0025  Score=49.99  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi-~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLL-SRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHhcC
Confidence            5899999999999999 877664

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.06  E-value=0.0026  Score=52.60  Aligned_cols=25  Identities=32%  Similarity=0.275  Sum_probs=19.4

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+|.++.|.|+.||||||++ +.|..
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~-~~l~~   47 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHL-QWFCD   47 (227)
T ss_dssp             CCCCEEEEECCC---CHHHH-HHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            57999999999999999999 87764

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.06  E-value=0.0036  Score=51.51  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.+++|.|+.||||||++ +.|..
T Consensus         1 ~~~~i~~~G~~g~GKtt~~-~~l~~   24 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFV-KLLTK   24 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHH-HHHHH
Confidence            3678999999999999999 88864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.06  E-value=0.003  Score=55.41  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|.||+|||||||. +.|+.
T Consensus         8 ~lI~I~GptgSGKTtla-~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELS-IEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCcCcHHHHH-HHHHH
Confidence            48999999999999998 66654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.04  E-value=0.0027  Score=49.39  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        13 ki~v~G~~~~GKSsli-~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVL-YQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5799999999999999 777653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.01  E-value=0.0029  Score=47.99  Aligned_cols=20  Identities=35%  Similarity=0.458  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+ +.+.+
T Consensus         3 i~~~G~~~~GKssl~-~~l~~   22 (164)
T 1r8s_A            3 ILMVGLDAAGKTTIL-YKLKL   22 (164)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHc
Confidence            789999999999999 77755

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.01  E-value=0.0028  Score=48.67  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        16 ~i~v~G~~~~GKssli-~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLI-TRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5899999999999999 77764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.00  E-value=0.0029  Score=48.55  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli-~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLL-HQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            5889999999999999 777653

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.00  E-value=0.0034  Score=52.21  Aligned_cols=24  Identities=33%  Similarity=0.364  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.++.|.|++||||||++ +.|..
T Consensus        26 ~~~~i~~eG~~GsGKsT~~-~~l~~   49 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAI-QVVVE   49 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            6889999999999999999 87765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.99  E-value=0.0036  Score=48.69  Aligned_cols=25  Identities=28%  Similarity=0.343  Sum_probs=20.6

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++.=.++++|+.|+|||||+ +.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~-~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTIL-KKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHH-HHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHH-HHHhc
Confidence            34457899999999999999 87765

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.99  E-value=0.0044  Score=49.26  Aligned_cols=23  Identities=26%  Similarity=0.157  Sum_probs=19.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .|.-+.|.|++|+|||||.+.++
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~   37 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALI   37 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            58889999999999999983444

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.99  E-value=0.0029  Score=48.88  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        20 ki~v~G~~~~GKSsli-~~l~~   40 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALT-LQFMY   40 (187)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhh
Confidence            5899999999999999 77765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.97  E-value=0.0036  Score=53.79  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|++|+|||||+ +.+.|.
T Consensus         9 ~V~ivG~~nvGKSTLl-n~l~g~   30 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLL-NNLLGV   30 (301)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            6999999999999999 888775

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.97  E-value=0.0031  Score=49.56  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        22 ki~ivG~~~vGKSsL~-~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALV-HRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5889999999999999 65544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0031  Score=48.60  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        12 ~i~v~G~~~~GKssli-~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLL-VRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHHhC
Confidence            5789999999999999 777653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.94  E-value=0.0032  Score=49.23  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        23 ki~vvG~~~~GKSsli-~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALT-IQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            5889999999999999 777653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.94  E-value=0.0039  Score=50.97  Aligned_cols=24  Identities=38%  Similarity=0.252  Sum_probs=21.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.++.+-|+.||||||++ +.+..
T Consensus         2 ~g~~i~~eG~~gsGKsT~~-~~l~~   25 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTAR-NVVVE   25 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            4889999999999999999 77765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.94  E-value=0.0031  Score=50.55  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        14 ~i~~~G~~g~GKTsl~-~~l~~~   35 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLL-TLLTTD   35 (218)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5889999999999999 777664

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.94  E-value=0.0047  Score=50.90  Aligned_cols=25  Identities=20%  Similarity=0.081  Sum_probs=22.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+|.++.+.|+.||||||+. +.+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~-~~l~~   43 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQS-HLLAE   43 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46899999999999999999 87765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.93  E-value=0.0033  Score=48.48  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        14 ki~v~G~~~~GKSsli-~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLV-LRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHHC
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            5899999999999999 777653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.93  E-value=0.0037  Score=52.66  Aligned_cols=22  Identities=18%  Similarity=0.229  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLi-n~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLI-NSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHH-HHHSSS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            4889999999999999 988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.93  E-value=0.0031  Score=48.93  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        12 ki~v~G~~~~GKSsli-~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLL-HQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            5899999999999999 777653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.92  E-value=0.0033  Score=49.67  Aligned_cols=21  Identities=14%  Similarity=0.123  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        16 ki~v~G~~~~GKSsli-~~l~~   36 (206)
T 2bov_A           16 KVIMVGSGGVGKSALT-LQFMY   36 (206)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5899999999999999 77765

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.91  E-value=0.003  Score=52.76  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..++.+++|.|+.||||||+. +.|..
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~-~~L~~   46 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFV-NILKQ   46 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHH-TTTGG
T ss_pred             ccCceEEEEECCCCCCHHHHH-HHHHH
Confidence            357889999999999999999 87765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.91  E-value=0.0041  Score=49.00  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        28 ki~vvG~~~~GKSsLi-~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLM-ERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHH-HHHCC-
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            4899999999999999 888764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.91  E-value=0.0047  Score=53.63  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=18.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +.+++|+||+|||||||. ..|+
T Consensus         3 ~~~i~i~GptgsGKt~la-~~La   24 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTS-VMLA   24 (322)
T ss_dssp             CEEEEEECCTTSCHHHHH-HHHH
T ss_pred             CcEEEEECCCcCCHHHHH-HHHH
Confidence            568999999999999999 6554

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.90  E-value=0.0034  Score=49.69  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        10 ki~v~G~~~~GKSsli-~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLM-NQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            5899999999999999 777654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.90  E-value=0.0036  Score=49.01  Aligned_cols=24  Identities=21%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      =.++++|+.|+|||||+ +.+.+-.
T Consensus        22 ~ki~v~G~~~~GKSsli-~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTII-NKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHH-HHTSCGG
T ss_pred             cEEEEECCCCCCHHHHH-HHHhcCC
Confidence            36899999999999999 8887754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.89  E-value=0.0033  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.361  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         9 ki~v~G~~~vGKSsli-~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALL-HVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5789999999999999 777653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=95.89  E-value=0.0042  Score=51.58  Aligned_cols=23  Identities=22%  Similarity=0.200  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|+.|+|||||+ +.+.|.
T Consensus        23 ~~I~lvG~~g~GKStl~-n~l~~~   45 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAG-NSILRK   45 (260)
T ss_dssp             EEEEEEECTTSCHHHHH-HHHHTS
T ss_pred             eEEEEECCCCCCHHHHH-HHHhCC
Confidence            36899999999999999 888764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.88  E-value=0.0041  Score=54.14  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|+||+|||||||. +.|+.
T Consensus         6 ~~i~i~GptGsGKTtla-~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLA-MALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHH-HHHHH
T ss_pred             cEEEEECCCCCCHHHHH-HHHHH
Confidence            58999999999999998 77764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.87  E-value=0.0042  Score=53.39  Aligned_cols=23  Identities=26%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -+++|+|+.|+|||||+ +.+.|.
T Consensus        11 g~v~ivG~~nvGKSTLi-n~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLL-NNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred             CEEEEECCCCCcHHHHH-HHHhCC
Confidence            38999999999999999 888875

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.87  E-value=0.0034  Score=50.60  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +-+++|+|++||||||+. +.+..
T Consensus         3 ~~~i~i~G~~gsGkst~~-~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIA-KRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHH-HHHHH
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHH
Confidence            357899999999999999 88864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.85  E-value=0.0038  Score=50.19  Aligned_cols=24  Identities=29%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      --.++|+|+.|+|||||+ +.+.+.
T Consensus        30 ~~~i~i~G~~g~GKTTl~-~~l~~~   53 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLI-ERTIER   53 (221)
T ss_dssp             CEEEEEEECTTSCHHHHH-HHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHH-HHHHHH
Confidence            358999999999999999 666653

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.85  E-value=0.0036  Score=49.12  Aligned_cols=21  Identities=24%  Similarity=0.271  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        10 ki~vvG~~~~GKSsli-~~l~~   30 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLV-LRFVK   30 (199)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCcHHHHH-HHHHc
Confidence            6899999999999999 77765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.83  E-value=0.0046  Score=50.69  Aligned_cols=25  Identities=28%  Similarity=0.311  Sum_probs=22.1

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+|.++.+-|+.||||||++ +.|..
T Consensus         3 ~~g~~i~~eG~~g~GKst~~-~~l~~   27 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQC-NILYK   27 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46899999999999999999 87764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.82  E-value=0.0035  Score=55.57  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|++|+|||||+ +.+.+.
T Consensus         4 v~IVG~pnvGKSTL~-n~L~~~   24 (368)
T 2dby_A            4 VGIVGLPNVGKSTLF-NALTRA   24 (368)
T ss_dssp             EEEECCSSSSHHHHH-HHHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHhCC
Confidence            789999999999999 998875

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.82  E-value=0.0038  Score=48.85  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        24 ki~vvG~~~~GKSsli-~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFL-FRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            5899999999999999 777654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.82  E-value=0.0038  Score=49.15  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        25 ki~vvG~~~~GKSsli-~~l~~~   46 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIV-CRFVQD   46 (192)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHHC
T ss_pred             EEEEECcCCCCHHHHH-HHHhcC
Confidence            5899999999999999 777653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.81  E-value=0.0049  Score=48.35  Aligned_cols=23  Identities=26%  Similarity=0.326  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|+.|+|||||+ +.+.+-
T Consensus        18 ~ki~v~G~~~~GKSsl~-~~l~~~   40 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTII-NQVKPA   40 (199)
T ss_dssp             EEEEEECCTTSCHHHHH-HHHSCC
T ss_pred             cEEEEECCCCCCHHHHH-HHHhcC
Confidence            46899999999999999 887764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.81  E-value=0.0039  Score=48.82  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        18 ki~v~G~~~~GKSsli-~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLL-LRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            5899999999999999 777653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.81  E-value=0.0046  Score=48.90  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        10 ki~v~G~~~~GKSsli-~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFL-FRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHTC
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5799999999999999 877664

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.81  E-value=0.0046  Score=51.79  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.|.
T Consensus         3 kI~lvG~~n~GKSTL~-n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLF-NALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            5799999999999999 988875

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.81  E-value=0.0039  Score=48.20  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         7 ~i~~~G~~~~GKssl~-~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLL-ISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5799999999999999 77764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.80  E-value=0.0039  Score=48.28  Aligned_cols=21  Identities=19%  Similarity=0.127  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        20 ki~v~G~~~~GKSsl~-~~l~~   40 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALT-IQFFQ   40 (183)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5789999999999999 77664

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.79  E-value=0.0046  Score=49.11  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi-~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLL-HQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHC-
T ss_pred             EEEEECcCCCCHHHHH-HHHHhC
Confidence            5899999999999999 877654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.79  E-value=0.0029  Score=50.86  Aligned_cols=23  Identities=26%  Similarity=0.279  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -.++|+|+.|+|||||+ +.+.+-
T Consensus        30 ~~i~v~G~~~~GKSsli-n~l~~~   52 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAI-NVLCNQ   52 (223)
T ss_dssp             CEEEEEESCHHHHHHHH-HHHTTC
T ss_pred             CEEEEEcCCCCCHHHHH-HHHhCC
Confidence            37899999999999999 888774

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=95.77  E-value=0.0086  Score=54.29  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=26.1

Q ss_pred             hccCcEEEEcCccCh-HHHHHHHHHHHhcCCCEEEEEecCh
Q 026304          106 YAKLDVIGIDEAQFF-EDLYEFCCNAADHDGKTVVVAGLDG  145 (240)
Q Consensus       106 ~~~p~lllLDEP~~~-~~i~~~l~~l~~~~g~tvi~vtHd~  145 (240)
                      ..+.+++++||.+-. ...+..|.++.. .+..+++++-+-
T Consensus       126 ~~~~~~iiiDE~~~~~~~~~~~l~~~~~-~~~~~~~vGD~~  165 (459)
T 3upu_A          126 LAKCRVLICDEVSMYDRKLFKILLSTIP-PWCTIIGIGDNK  165 (459)
T ss_dssp             CSSCSEEEESCGGGCCHHHHHHHHHHSC-TTCEEEEEECTT
T ss_pred             ccCCCEEEEECchhCCHHHHHHHHHhcc-CCCEEEEECCHH
Confidence            346799999999653 245555556554 567788887543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.77  E-value=0.0047  Score=48.21  Aligned_cols=23  Identities=35%  Similarity=0.319  Sum_probs=19.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .=.++++|+.|+|||||+ +.+.+
T Consensus        16 ~~~i~v~G~~~~GKssl~-~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTIL-YQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHH-HHHHT
T ss_pred             ccEEEEECCCCCCHHHHH-HHHhc
Confidence            347899999999999999 77764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.74  E-value=0.0042  Score=48.03  Aligned_cols=21  Identities=19%  Similarity=0.165  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         8 ki~~~G~~~~GKSsli-~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLT-IQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHc
Confidence            5789999999999999 76653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.73  E-value=0.0044  Score=48.46  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        22 ki~v~G~~~~GKSsli-~~l~~   42 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLT-YRFCA   42 (189)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            5899999999999999 77765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.73  E-value=0.004  Score=54.03  Aligned_cols=31  Identities=19%  Similarity=0.000  Sum_probs=24.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +++..+.+ .|.-++|+|++|+||||+. ..+.
T Consensus       135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a-~~l~  165 (314)
T 1ko7_A          135 LHGVLVDV-YGVGVLITGDSGIGKSETA-LELI  165 (314)
T ss_dssp             EESEEEEE-TTEEEEEEESTTSSHHHHH-HHHH
T ss_pred             eeEEEEEE-CCEEEEEEeCCCCCHHHHH-HHHH
Confidence            55655666 6899999999999999998 4443

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.72  E-value=0.0053  Score=49.85  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .-.++|+|+.|+|||||+ +.+.+-
T Consensus        29 ~~kI~vvG~~~vGKSsLi-n~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFM-NIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHH-HHHTTT
T ss_pred             CCEEEEECCCCCCHHHHH-HHHhCC
Confidence            347899999999999999 888764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.72  E-value=0.0042  Score=49.23  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=20.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.=.++|+|+.|+|||||+ +.+.+-
T Consensus        23 ~~~ki~vvG~~~~GKSsli-~~l~~~   47 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLA-HQFVEG   47 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHH-HHHHHS
T ss_pred             CcEEEEEECCCCcCHHHHH-HHHHhC
Confidence            3446899999999999999 777664

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.70  E-value=0.0045  Score=48.56  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        23 ki~v~G~~~~GKSsli-~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLL-LQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHhcC
Confidence            5889999999999999 777653

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0044  Score=48.64  Aligned_cols=24  Identities=29%  Similarity=0.304  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      .++|+|+.|+|||||+ +.+.+-.+
T Consensus        25 ki~v~G~~~~GKSsli-~~l~~~~~   48 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFL-FRYADDTF   48 (191)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHHTT
T ss_pred             EEEEECCCCcCHHHHH-HHHhcCCC
Confidence            5799999999999999 87776443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.70  E-value=0.0044  Score=48.19  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++++|+.|+|||||+ +.+.+-
T Consensus        22 ~~i~v~G~~~~GKSsli-~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTIL-YQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHH-HHHHTT
T ss_pred             eEEEEECCCCCCHHHHH-HHHhcC
Confidence            36899999999999999 777664

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.69  E-value=0.0044  Score=49.20  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        10 ki~v~G~~~~GKSsli-~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLL-LRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHC
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5799999999999999 777653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.69  E-value=0.0044  Score=49.60  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        28 ki~lvG~~~vGKSsLi-~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLV-RRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECcCCCCHHHHH-HHHHh
Confidence            5899999999999999 76654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.68  E-value=0.0047  Score=47.62  Aligned_cols=21  Identities=33%  Similarity=0.232  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus        10 ki~v~G~~~~GKssl~-~~~~~   30 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLL-ISYTS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5889999999999999 76654

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.67  E-value=0.0055  Score=48.43  Aligned_cols=21  Identities=19%  Similarity=0.249  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus        22 ki~~vG~~~vGKTsLi-~~l~~   42 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQ-KVVFH   42 (196)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5899999999999999 87776

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.64  E-value=0.0072  Score=52.34  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ..+++|+||+|||||||. ..++
T Consensus        10 ~~~i~i~GptgsGKt~la-~~La   31 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALA-IELR   31 (316)
T ss_dssp             CEEEEEECCTTSCHHHHH-HHHH
T ss_pred             CcEEEEECCCccCHHHHH-HHHH
Confidence            568999999999999999 6664

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.64  E-value=0.0058  Score=52.08  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      .++|+|+.|||||||+ +.|.|..+
T Consensus        26 ~I~vvG~~~~GKSTll-n~l~g~~~   49 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVL-ENIVGRDF   49 (315)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHH-HHHHCCCc
Confidence            6999999999999999 99988643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.62  E-value=0.006  Score=48.12  Aligned_cols=24  Identities=29%  Similarity=0.308  Sum_probs=20.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.=.++|+|+.|+|||||+ +.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi-~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTIL-YKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHH-HHHCS
T ss_pred             CccEEEEECCCCCCHHHHH-HHHHh
Confidence            4457999999999999999 87765

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.62  E-value=0.006  Score=48.78  Aligned_cols=24  Identities=29%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      .++|+|+.|+|||||+ +.+.+-.+
T Consensus        27 ki~vvG~~~~GKSsLi-~~l~~~~~   50 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFL-YRYTDNKF   50 (217)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHCSCC
T ss_pred             EEEEECcCCCCHHHHH-HHHhcCCC
Confidence            5899999999999999 88776443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.62  E-value=0.0064  Score=50.95  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.|.
T Consensus         7 kI~lvG~~nvGKTsL~-n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLF-NALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            5899999999999999 888874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.62  E-value=0.006  Score=48.11  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .=.++++|+.|+|||||+ +.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~-~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLV-VSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHH-HHHHC-
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHhC
Confidence            346899999999999999 777653

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.62  E-value=0.0051  Score=48.45  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++|+|+.|+|||||+ +.+.+-
T Consensus        29 ~ki~v~G~~~vGKSsli-~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALV-VRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHHS
T ss_pred             eEEEEECCCCCCHHHHH-HHHHhC
Confidence            46899999999999999 777653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.62  E-value=0.0051  Score=48.33  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        25 ki~~vG~~~~GKSsl~-~~l~~~   46 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLL-LAFSKG   46 (194)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECcCCCCHHHHH-HHHhcC
Confidence            6899999999999999 777653

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.62  E-value=0.0051  Score=48.20  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++|+|+.|+|||||+ +.+.+-
T Consensus        23 ~ki~v~G~~~~GKSsli-~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFV-NVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHHS
T ss_pred             cEEEEECCCCCCHHHHH-HHHHcC
Confidence            35899999999999999 777653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.62  E-value=0.0063  Score=49.43  Aligned_cols=21  Identities=43%  Similarity=0.600  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++.|+||.||||+|.. +.|+.
T Consensus         2 ~Iil~GpPGsGKgTqa-~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQA-KRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5789999999999998 77764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.61  E-value=0.0051  Score=48.66  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=20.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -=.++|+|+.|+|||||+ +.+.+-
T Consensus        28 ~~ki~v~G~~~~GKSsli-~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFL-MRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHH-HHHHHC
T ss_pred             CeEEEEECcCCCCHHHHH-HHHHhC
Confidence            346899999999999999 777653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.61  E-value=0.027  Score=54.16  Aligned_cols=24  Identities=21%  Similarity=0.266  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCch
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      -.+.+.||.|+|||++. +.++...
T Consensus       489 ~~~ll~G~~GtGKT~la-~~la~~l  512 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVT-VQLSKAL  512 (758)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred             eEEEEECCCCCcHHHHH-HHHHHHh
Confidence            36899999999999999 9887643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.61  E-value=0.0052  Score=47.96  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        17 ~i~v~G~~~~GKssli-~~l~~~   38 (195)
T 1x3s_A           17 KILIIGESGVGKSSLL-LRFTDD   38 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHcC
Confidence            6899999999999999 777653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=95.60  E-value=0.0051  Score=54.41  Aligned_cols=24  Identities=25%  Similarity=0.245  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |-.++|+|.+|+|||||+ +.+.+-
T Consensus         2 ~~kI~IVG~pnvGKSTL~-n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLF-NALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHHT
T ss_pred             CCEEEEECCCCCCHHHHH-HHHHCC
Confidence            346899999999999999 988873

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=95.59  E-value=0.0056  Score=55.95  Aligned_cols=29  Identities=17%  Similarity=0.156  Sum_probs=25.0

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.+-+|+..+|+||+|+|||||+ +.|.+.
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~-~~l~~~  174 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLI-QELIHN  174 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHH-HHHHHH
T ss_pred             hhhccCCEEEEECCCCCCccHHH-HHHHhh
Confidence            56778999999999999999999 777553

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.59  E-value=0.0061  Score=48.96  Aligned_cols=22  Identities=27%  Similarity=0.220  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        36 ki~vvG~~~vGKSsli-~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLL-MVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHC-
T ss_pred             EEEEECcCCCCHHHHH-HHHHcC
Confidence            6889999999999999 777653

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.59  E-value=0.0064  Score=51.32  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|..|+|||||+ +.+.|.
T Consensus         5 ~I~lvG~~n~GKSTLi-n~l~g~   26 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLF-NQLTGS   26 (274)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHTT
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            5899999999999999 988874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.57  E-value=0.0053  Score=48.74  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=20.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .=.++|+|+.|+|||||+ +.+.+-
T Consensus        20 ~~~i~v~G~~~~GKSsli-~~l~~~   43 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLL-VRFVED   43 (213)
T ss_dssp             CEEEEEECSTTSSHHHHH-HHHHHC
T ss_pred             ceEEEEECCCCCCHHHHH-HHHHhC
Confidence            346899999999999999 777653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.57  E-value=0.006  Score=48.61  Aligned_cols=32  Identities=19%  Similarity=0.058  Sum_probs=22.5

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.|.-..--.++++|+.|+|||||+ +.+.+-
T Consensus        17 ~~~~~~~~~~ki~vvG~~~~GKSsli-~~l~~~   48 (207)
T 2fv8_A           17 NLYFQSMIRKKLVVVGDGACGKTCLL-IVFSKD   48 (207)
T ss_dssp             --CGGGSEEEEEEEEECTTSSHHHHH-HHHHHS
T ss_pred             ccccccccCcEEEEECcCCCCHHHHH-HHHhcC
Confidence            33344333347899999999999999 777653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.54  E-value=0.0042  Score=48.13  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=9.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        10 ki~v~G~~~~GKssl~-~~l~~~   31 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVL-FRFSED   31 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            5899999999999999 777653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.54  E-value=0.0054  Score=49.18  Aligned_cols=22  Identities=27%  Similarity=0.361  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        30 ki~vvG~~~vGKSsLi-~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALL-HVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            6899999999999999 777664

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.53  E-value=0.0042  Score=47.91  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus         9 ki~~vG~~~vGKTsli-~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLI-HRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            5899999999999999 766653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.50  E-value=0.0093  Score=48.04  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=19.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      --.++|+|+.|+|||||+ +.+.+.
T Consensus        38 ~~~i~ivG~~gvGKTtl~-~~l~~~   61 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLI-EKLIDN   61 (226)
T ss_dssp             CEEEEEEESTTSSHHHHH-HHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHH-HHHHHH
Confidence            357899999999999999 555543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.50  E-value=0.006  Score=47.84  Aligned_cols=21  Identities=24%  Similarity=0.221  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus        23 ki~vvG~~~vGKTsLi-~~l~~   43 (187)
T 3c5c_A           23 NLAILGRRGAGKSALT-VKFLT   43 (187)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCcHHHHH-HHHHh
Confidence            5899999999999999 66654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.50  E-value=0.0018  Score=53.97  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+..+.|  +.|.||+|+|||||+ +.++..
T Consensus        39 ~~~~~~~~--vll~G~~GtGKT~la-~~la~~   67 (268)
T 2r62_A           39 LGAKIPKG--VLLVGPPGTGKTLLA-KAVAGE   67 (268)
T ss_dssp             HSCCCCSC--CCCBCSSCSSHHHHH-HHHHHH
T ss_pred             CCCCCCce--EEEECCCCCcHHHHH-HHHHHH
Confidence            34455555  789999999999999 998763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.46  E-value=0.0061  Score=48.62  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         9 ki~vvG~~~~GKTsli-~~l~~   29 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLF-VRLLT   29 (214)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            5789999999999999 76655

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.39  E-value=0.0065  Score=48.17  Aligned_cols=22  Identities=32%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        27 ki~vvG~~~~GKSsli-~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLL-IVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHhC
Confidence            5889999999999999 777653

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.36  E-value=0.0063  Score=47.50  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=20.2

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.=.++++|+.|+|||||+ +.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli-~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSIL-YRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred             CceEEEEECCCCCCHHHHH-HHHHc
Confidence            4457999999999999999 87754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.35  E-value=0.007  Score=47.42  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        20 ki~v~G~~~~GKssli-~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLL-MSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            6899999999999999 777653

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.35  E-value=0.0072  Score=50.98  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      .++|+|..|+|||||+ +.+.|..+
T Consensus        28 ~i~vvG~~~~GKSSLl-n~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVL-ENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHH-HHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHH-HHHHCCCc
Confidence            7999999999999999 98887543

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.34  E-value=0.0088  Score=49.94  Aligned_cols=23  Identities=17%  Similarity=0.294  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++++|+.|+|||||+ +.+.|-
T Consensus        37 ~~I~lvG~~g~GKSSLi-n~l~~~   59 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTV-NSLIGE   59 (262)
T ss_dssp             EEEEEEECTTSSHHHHH-HHHHTS
T ss_pred             cEEEEECCCCCCHHHHH-HHHhCC
Confidence            36899999999999999 888774

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.28  E-value=0.0093  Score=48.38  Aligned_cols=21  Identities=24%  Similarity=0.230  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.|
T Consensus        39 kVvlvG~~~vGKSSLl-~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLA-NIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHC
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            5899999999999999 77765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.27  E-value=0.0043  Score=49.69  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus        13 ki~vvG~~~~GKSsli-~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYI-NRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHH-CBCTTC
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5789999999999999 777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1xx6a1	141	c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-termi	2e-39
d2b8ta1	139	c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-term	3e-38
d1xbta1	133	c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-term	1e-35
d1xbta2	41	g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-ter	4e-12
d1xx6a2	49	g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-ter	2e-10
d2b8ta2	67	g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-ter	5e-10

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 141

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

 Score =  131 bits (330), Expect = 2e-39
 Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 4/141 (2%)

Query: 28  RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLP 87
           ++ G + VI+GPM++GK+  L+RRIR      + I + K   D RY+ + VV+H G K  
Sbjct: 4   KDHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQ 63

Query: 88  CWALPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDY 147
             A+       +          +VI IDE QFF+D      N     G+ V+ AGLD D+
Sbjct: 64  AVAIKNSREILKY----FEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 119

Query: 148 LRRSFGSVLDIIPLADTVTKL 168
             + FG + +++ +A+ V K+
Sbjct: 120 RGKPFGPIPELMAIAEFVDKI 140

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Length = 139

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

 Score =  127 bits (321), Expect = 3e-38
 Identities = 45/139 (32%), Positives = 67/139 (48%), Gaps = 2/139 (1%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           G I  I GPMFAGKT  L+RR+           + K   DTR  I ++ +  G  LP   
Sbjct: 2   GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRS-IRNIQSRTGTSLPSVE 60

Query: 91  LPELTSFRQKLGDDAYA-KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLR 149
           +         +  +++  +  VIGIDE QFF+D      N    +G  V+++GLD ++  
Sbjct: 61  VESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 120

Query: 150 RSFGSVLDIIPLADTVTKL 168
             FG +  +   AD +TKL
Sbjct: 121 EPFGPIAKLFTYADKITKL 139

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 1e-35
 Identities = 61/139 (43%), Positives = 84/139 (60%), Gaps = 7/139 (5%)

Query: 31  GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWA 90
           G+I VI+GPMF+GK+T L+RR+R          +IK +KDTRY   S  THD   +    
Sbjct: 2   GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRY-SSSFCTHDRNTMEALP 60

Query: 91  LPELTSFRQKLGDDAYAKLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRR 150
              L    Q+        + VIGIDE QFF D+ EFC   A+   KTV+VA LDG + R+
Sbjct: 61  ACLLRDVAQE-----ALGVAVIGIDEGQFFPDIVEFCEAMANAG-KTVIVAALDGTFQRK 114

Query: 151 SFGSVLDIIPLADTVTKLT 169
            FG++L+++PLA++V KLT
Sbjct: 115 PFGAILNLVPLAESVVKLT 133

>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 4e-12
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 170 ARCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHY 208
           A C  C + A +T R   E E E+IGGAD Y  VCR  Y
Sbjct: 1   AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCY 39

>d1xx6a2 g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} Length = 49

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 52.9 bits (127), Expect = 2e-10
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 170 ARCELCGKRAFFTLRKTE------ETETEIIGGADVYMPVCRQHYV 209
           A C +CG  A  T R         +    +IG  + Y   CR+ +V
Sbjct: 1   AICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCRKCHV 46

>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} Length = 67

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

 Score = 52.2 bits (125), Expect = 5e-10
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 169 TARCELCGKRAFFTLRKTE------ETETEIIGGADVYMPVCRQHYV 209
           TA C  CG  A  +LRK +        +   IG  + Y  VCR H+ 
Sbjct: 1   TAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHK 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.98
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.98
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.97
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.95
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.94
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	99.79
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	99.77
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	99.73
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.59
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.47
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.26
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.68
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	98.63
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.6
d1xbta2	41	Thymidine kinase, TK1, C-terminal domain {Human (H	98.45
d1xx6a2	49	Thymidine kinase, TK1, C-terminal domain {Clostrid	98.33
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.21
d2b8ta2	67	Thymidine kinase, TK1, C-terminal domain {Ureaplas	98.11
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	98.07
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.97
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.96
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.9
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.89
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.8
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.79
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.75
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.75
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.72
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.72
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.7
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.67
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.65
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.62
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.6
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.58
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.56
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.46
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.45
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.44
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.44
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.43
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.43
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.39
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.39
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.38
d1okkd2	207	GTPase domain of the signal recognition particle r	97.38
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.35
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.34
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.32
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.32
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.29
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.29
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.28
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.27
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.25
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.25
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.24
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.23
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.22
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.19
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.16
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.16
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.12
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.12
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.04
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.04
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.0
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.97
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.96
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.96
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.94
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.93
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.91
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.91
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.9
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.9
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.86
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.86
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.85
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.82
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.81
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	96.81
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.81
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.8
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.79
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.79
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.76
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.72
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.72
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.72
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.7
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.65
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.63
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.63
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.63
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.62
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.6
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.59
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.57
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.56
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.56
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.56
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.55
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.55
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.54
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.54
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.53
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.53
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.52
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.5
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.49
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.47
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.43
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.41
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.41
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.35
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.32
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.32
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.32
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.3
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.3
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.24
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.22
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.2
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.2
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.2
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.19
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.16
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.16
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.07
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.04
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	96.03
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.01
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.99
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.99
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.99
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.98
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.91
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.91
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.88
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.85
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.85
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.82
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.81
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.79
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.76
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.74
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.7
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.68
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.68
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.66
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.66
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.66
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	95.62
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.59
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.58
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.56
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.53
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	95.51
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.47
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.45
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.44
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.44
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.42
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.4
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.4
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.39
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.37
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.36
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.33
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.32
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.24
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.17
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.17
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.16
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.14
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.13
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.13
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.12
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.09
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.08
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.07
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.02
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.01
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.99
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.98
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	94.9
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.88
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.88
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.86
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.81
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.71
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.67
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	94.53
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.41
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.16
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.06
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.97
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.94
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.91
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.87
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	93.85
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.84
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.71
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.62
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.46
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.45
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.14
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.06
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.94
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.9
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.17
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	91.79
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.73
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.58
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.52
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	91.43
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.38
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.37
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.25
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.73
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.67
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	90.53
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.31
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.28
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.25
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	89.76
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	89.09
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.91
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	87.6
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	87.5
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.19
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	86.53
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.11
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.99
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	84.87
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	84.64
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.63
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	84.47
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.44
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.28
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	84.16
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.93
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.63
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	83.44
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	82.21
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	80.32
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	80.2

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=8.6e-39  Score=266.17  Aligned_cols=157  Identities=18%  Similarity=0.150  Sum_probs=136.1

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      ||+++|||++|    |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++.   +. ..+
T Consensus         1 mi~v~nlsk~y~~~aL~~vs~~i~~Ge~~~liGpsGaGKSTll-~~l~Gl~~p~sG~I~~~G~~i~~~~~~---~r-~ig   75 (229)
T d3d31a2           1 MIEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFL-ELIAGFHVPDSGRILLDGKDVTDLSPE---KH-DIA   75 (229)
T ss_dssp             CEEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHH-HHHHTSSCCSEEEEEETTEECTTSCHH---HH-TCE
T ss_pred             CEEEEEEEEEeCCEEEeeeEEEECCCCEEEEECCCCCcHHHHH-HHHhcCcCCCCCEEEEccEeccccchh---Hh-cce
Confidence            68999999999    9999999999999999999999999999 999998        4677777544332   22 359


Q ss_pred             EEEccCceecceecCcchhHHHhh---------------------------------------chhhhccCcEEEEcCcc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKL---------------------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |+||++.+++.+|+.+|+.+....                                       +..++.+|++|||||||
T Consensus        76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt  155 (229)
T d3d31a2          76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL  155 (229)
T ss_dssp             EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred             eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence            999999999999999988765432                                       12268999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      +      ..+++++|+++.++.|+|||++|||++++          ..+||||++|++ +++++|+|+++
T Consensus       156 s~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~----------~~~~drv~vm~~G~iv~~g~~~el  215 (229)
T d3d31a2         156 SALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEA----------RIMADRIAVVMDGKLIQVGKPEEI  215 (229)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHH----------HHHCSEEEEESSSCEEEEECHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            8      45899999999876799999999999999          999999999999 99999998875

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-38  Score=263.77  Aligned_cols=156  Identities=24%  Similarity=0.192  Sum_probs=121.8

Q ss_pred             EEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304           11 VTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        11 l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      |+++||+++|     ++||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++.   + +..+
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl-~~i~Gl~~p~sG~I~i~g~~i~~~~~~---~-r~ig   75 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLL-RMIAGLETITSGDLFIGEKRMNDTPPA---E-RGVG   75 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEESSSCCTTSCGG---G-TCEE
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCCEEEECCEECCCCchh---h-ceee
Confidence            6899999999     9999999999999999999999999999 999997        4567766544322   2 2359


Q ss_pred             EEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEEc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGID  115 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllLD  115 (240)
                      |+||++.+++.+|+.++..+....                                          +..++.+|++|+||
T Consensus        76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlD  155 (232)
T d2awna2          76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD  155 (232)
T ss_dssp             EECSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEE
T ss_pred             eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            999999999999999887664321                                          12268999999999


Q ss_pred             CccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          116 EAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       116 EP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |||+      ..+++++|+++.++.|+|||++|||++++          ..+||||++|++ +++..|+|+++
T Consensus       156 EPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a----------~~~~dri~vm~~G~iv~~G~~~el  218 (232)
T d2awna2         156 EPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEA----------MTLADKIVVLDAGRVAQVGKPLEL  218 (232)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEeCHHHH
Confidence            9988      45799999999776899999999999999          999999999999 99999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=2.2e-38  Score=265.22  Aligned_cols=157  Identities=18%  Similarity=0.125  Sum_probs=128.7

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      .|+++||+++|     |++|||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++.   + +..
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl-~~i~Gl~~p~sG~I~i~g~~i~~~~~~---~-r~i   80 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTL-RMIAGLEEPTEGRIYFGDRDVTYLPPK---D-RNI   80 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCGG---G-GTE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHH-HHHHcCCCCCCCEEEEcceecccCCcc---c-ceE
Confidence            58999999999     9999999999999999999999999999 999997        4677777554432   2 236


Q ss_pred             eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL  114 (240)
                      +|+||++.+++.+|+.++..+....                                          +..++.+|++|+|
T Consensus        81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLll  160 (239)
T d1v43a3          81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM  160 (239)
T ss_dssp             EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred             EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceee
Confidence            9999999999999998876543211                                          1226899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||+      +.+++++++++.++.|+|||++|||++++          ..+||||++|++ +++..|+|+++
T Consensus       161 DEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a----------~~~~dri~vm~~G~iv~~G~~~el  224 (239)
T d1v43a3         161 DEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEA----------MTMGDRIAVMNRGQLLQIGSPTEV  224 (239)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99988      46899999999875799999999999999          999999999999 99999998765

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=8e-38  Score=262.16  Aligned_cols=161  Identities=19%  Similarity=0.103  Sum_probs=137.7

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh--cccC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD--TRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~--~~~~   74 (240)
                      .|+++||+++|     ++||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...+....  .+.+
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll-~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r   81 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTL-RMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR   81 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHH-HHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence            58999999999     8999999999999999999999999999 999997        467888776544321  1223


Q ss_pred             CCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEE
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVI  112 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~ll  112 (240)
                      ..+|+||++.+++.+|+.++..+...+                                          +..++.+|++|
T Consensus        82 ~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iL  161 (240)
T d1g2912          82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVF  161 (240)
T ss_dssp             SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred             cceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            469999999999999999887765331                                          12268999999


Q ss_pred             EEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          113 GIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       113 lLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||||||+      +.+++++|+++.++.|+|||++|||++++          ..+||||++|++ ++++.|+++++
T Consensus       162 llDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~----------~~~~drv~vm~~G~iv~~G~~~el  227 (240)
T d1g2912         162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEA----------MTMGDRIAVMNRGVLQQVGSPDEV  227 (240)
T ss_dssp             EEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             EecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            9999988      45899999999875699999999999999          999999999999 99999998764

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.1e-38  Score=265.57  Aligned_cols=162  Identities=17%  Similarity=0.156  Sum_probs=136.8

Q ss_pred             CCceEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304            7 KPAAVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus         7 ~~~~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      ++.+|+++||+++|     |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++....+.
T Consensus         3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~   81 (240)
T d1ji0a_           3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTL-SAIAGLVRAQKGKIIFNGQDITNKPAHVINRM   81 (240)
T ss_dssp             CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred             cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHH-HHHhCCCCCCccEEEecccccccccHHHHHHh
Confidence            45699999999999     9999999999999999999999999999 999997        467877766554444443


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      + .+|++|+..+|+.+|+.++..+....                                          +..++.+|++
T Consensus        82 g-i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~l  160 (240)
T d1ji0a_          82 G-IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL  160 (240)
T ss_dssp             T-EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE
T ss_pred             c-ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE
Confidence            3 47899999999999988765432110                                          1226899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |+|||||+      +.+++++|+++++ +|+|||++|||++++          .++||||++|++ ++++.|+++++
T Consensus       161 LllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~l~~~----------~~~~drv~vl~~G~iv~~g~~~el  226 (240)
T d1ji0a_         161 LMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNALGA----------LKVAHYGYVLETGQIVLEGKASEL  226 (240)
T ss_dssp             EEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHHHH----------HHHCSEEEEEETTEEEEEEEHHHH
T ss_pred             eeecCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999988      5689999999987 699999999999999          999999999999 99999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-38  Score=265.10  Aligned_cols=161  Identities=15%  Similarity=0.101  Sum_probs=136.8

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      ||+++||+++|         |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++.....
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl-~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~   79 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLI-RCVNLLERPTEGSVLVDGQELTTLSESELTK   79 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHH-HHHTTSSCCSEEEEEETTEEECTTCHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHH-HHHcCCccccCCceEEcCeEeeeCChhhhhh
Confidence            68999999998         8999999999999999999999999999 999997        46788876655433211


Q ss_pred             c-CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccC
Q 026304           73 Y-AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKL  109 (240)
Q Consensus        73 ~-~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p  109 (240)
                      . +..+||||++.+++.+|+.++..+...+                                          +..++.+|
T Consensus        80 ~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P  159 (240)
T d3dhwc1          80 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNP  159 (240)
T ss_dssp             HHHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred             hhccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence            1 2359999999999999999887765332                                          12258999


Q ss_pred             cEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          110 DVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       110 ~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ++||+||||+      +.+++++|+++.++.|+|||++|||++++          ..+||||++|++ ++++.|+++++
T Consensus       160 ~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~----------~~~~dri~vl~~G~iv~~G~~~ei  228 (240)
T d3dhwc1         160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVV----------KRICDCVAVISNGELIEQDTVSEV  228 (240)
T ss_dssp             SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHH----------HHHCSEEEEEETTEEEEEEETTTT
T ss_pred             CeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHH----------HHhCCEEEEEECCEEEEECCHHHH
Confidence            9999999988      45899999999876699999999999999          999999999999 99999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5.6e-38  Score=263.07  Aligned_cols=161  Identities=20%  Similarity=0.097  Sum_probs=136.3

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccch-hccc
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSK-DTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~-~~~~   73 (240)
                      .|+++||+++|       |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...+... ..+.
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll-~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r   81 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFM-RIIAGLDVPSTGELYFDDRLVASNGKLIVPPED   81 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHH-HHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHH-HHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence            58999999999       8899999999999999999999999999 999997        46888887644322 1122


Q ss_pred             CCCeEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcE
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDV  111 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~l  111 (240)
                      +..+|+||++.+++.+|+.+|..+....                                          +..++.+|++
T Consensus        82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~l  161 (242)
T d1oxxk2          82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL  161 (242)
T ss_dssp             SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred             ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccc
Confidence            3369999999999999999887653221                                          1226899999


Q ss_pred             EEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          112 IGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       112 llLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      ||+||||+      ..+++++|+++.++.|+|||++|||++++          ..+||||++|++ +++++|+|+++
T Consensus       162 lllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~----------~~~~dri~vm~~G~iv~~g~~~el  228 (242)
T d1oxxk2         162 LLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADI----------FAIADRVGVLVKGKLVQVGKPEDL  228 (242)
T ss_dssp             EEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHH
T ss_pred             eeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHH----------HHhCCEEEEEECCEEEEEcCHHHH
Confidence            99999988      45899999999776799999999999999          999999999999 99999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.5e-37  Score=259.11  Aligned_cols=157  Identities=19%  Similarity=0.121  Sum_probs=130.6

Q ss_pred             eEEEcceeEee---------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcc
Q 026304           10 AVTTNQVNSGR---------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTR   72 (240)
Q Consensus        10 ~l~~~~ls~~~---------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~   72 (240)
                      ||+++||+++|         |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++..+++....+
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl-~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~   79 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPTEGEVYIDNIKTNDLDDDELTK   79 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhh-HhccCCCCCCcceeEECCEEcCcCChhhcch
Confidence            68999999998         8999999999999999999999999999 999997        46777776655443221


Q ss_pred             --cCCCeEEEccCceecceecCcchhHHHhh----------------------------------------------chh
Q 026304           73 --YAIDSVVTHDGAKLPCWALPELTSFRQKL----------------------------------------------GDD  104 (240)
Q Consensus        73 --~~~~~~v~q~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~  104 (240)
                        ....+|+||++.+++.+|+.++..+...+                                              +..
T Consensus        80 ~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra  159 (230)
T d1l2ta_          80 IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA  159 (230)
T ss_dssp             HHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred             hhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence              22359999999999999998876654321                                              112


Q ss_pred             hhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCC
Q 026304          105 AYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGK  177 (240)
Q Consensus       105 l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~  177 (240)
                      ++.+|++|||||||+      +.+++++|+++.++.|+|||++|||++.+           ++||||++|++ +++..|+
T Consensus       160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-----------~~~drv~~m~~G~Iv~~g~  228 (230)
T d1l2ta_         160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-----------RFGERIIYLKDGEVEREEK  228 (230)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-----------TTSSEEEEEETTEEEEEEE
T ss_pred             hhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-----------HhCCEEEEEECCEEEEecc
Confidence            589999999999988      46899999999876799999999999866           69999999999 8887765


Q ss_pred             c
Q 026304          178 R  178 (240)
Q Consensus       178 ~  178 (240)
                      +
T Consensus       229 ~  229 (230)
T d1l2ta_         229 L  229 (230)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.7e-37  Score=260.47  Aligned_cols=159  Identities=16%  Similarity=0.128  Sum_probs=134.7

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++|||++|     |+||||++++||+++|+||||||||||+ ++|+|+        .++|+++...++....+.+ .
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl-~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g-i   81 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLI-NVITGFLKADEGRVYFENKDITNKEPAELYHYG-I   81 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT-E
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHH-HHHHCCCcCCCcEEEECCEeccchhHHHHHHhc-C
Confidence            89999999999     8999999999999999999999999999 999997        4677777666555444443 4


Q ss_pred             eEEEccCceecceecCcchhHHH-------------------------h-------h-----------------------
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQ-------------------------K-------L-----------------------  101 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~-------------------------~-------~-----------------------  101 (240)
                      +++||++.+++.+++.+|+.+..                         +       +                       
T Consensus        82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~i  161 (254)
T d1g6ha_          82 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEI  161 (254)
T ss_dssp             EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred             CccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHH
Confidence            89999999999888887664310                         0       0                       


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +..++.+|++|||||||+      ..+++++|+++++ +|+|||++|||++++          .++||||++|++ ++++
T Consensus       162 AraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl~~~----------~~~~Drv~vm~~G~iv~  230 (254)
T d1g6ha_         162 GRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRLDIV----------LNYIDHLYVMFNGQIIA  230 (254)
T ss_dssp             HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCCSTT----------GGGCSEEEEEETTEEEE
T ss_pred             HHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHHHH----------HHhCCEEEEEeCCEEEE
Confidence            112589999999999988      4589999999987 799999999999999          999999999999 9999


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|++++.
T Consensus       231 ~g~~~e~  237 (254)
T d1g6ha_         231 EGRGEEE  237 (254)
T ss_dssp             EEESHHH
T ss_pred             EecHHHH
Confidence            9988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2.2e-36  Score=256.53  Aligned_cols=160  Identities=18%  Similarity=0.149  Sum_probs=133.8

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchh------
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKD------   70 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~------   70 (240)
                      .|+++||+|+|     |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++...++...      
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl-~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~   80 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFL-RCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   80 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHH-HHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence            58999999999     9999999999999999999999999999 999997        467887765543210      


Q ss_pred             -----cccCCCeEEEccCceecceecCcchhHHHh-h-------------------------------------------
Q 026304           71 -----TRYAIDSVVTHDGAKLPCWALPELTSFRQK-L-------------------------------------------  101 (240)
Q Consensus        71 -----~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~-~-------------------------------------------  101 (240)
                           .+.+..+|+||++.+++.+++.++..+... .                                           
T Consensus        81 ~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i  160 (258)
T d1b0ua_          81 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  160 (258)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             HhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence                 111225899999999999998877654310 0                                           


Q ss_pred             chhhhccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeec
Q 026304          102 GDDAYAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCEL  174 (240)
Q Consensus       102 ~~~l~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~  174 (240)
                      +..++.+|++||+||||+      +.+++++|+++++ +|+|||++|||++++          ..+||||++|++ ++++
T Consensus       161 AraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl~~~----------~~~adri~vm~~G~iv~  229 (258)
T d1b0ua_         161 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMGFA----------RHVSSHVIFLHQGKIEE  229 (258)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCHHHH----------HHHCSEEEEEETTEEEE
T ss_pred             HHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCHHHH----------HHhCCEEEEEECCEEEE
Confidence            122589999999999988      4689999999987 699999999999999          999999999999 9999


Q ss_pred             cCCccee
Q 026304          175 CGKRAFF  181 (240)
Q Consensus       175 ~g~~~~~  181 (240)
                      .|+|+++
T Consensus       230 ~g~~~ev  236 (258)
T d1b0ua_         230 EGDPEQV  236 (258)
T ss_dssp             EECHHHH
T ss_pred             EcCHHHH
Confidence            9998764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.9e-36  Score=253.04  Aligned_cols=160  Identities=19%  Similarity=0.163  Sum_probs=132.9

Q ss_pred             eEEEcceeEee-----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCC
Q 026304           10 AVTTNQVNSGR-----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAID   76 (240)
Q Consensus        10 ~l~~~~ls~~~-----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~   76 (240)
                      +|+++||+++|     |+|+||+|++||+++|+||||||||||+ ++|+|+        .++|+++...+.  ..+ ...
T Consensus         2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl-~~l~G~~~p~~G~i~i~G~~i~~~~~--~~~-~~i   77 (238)
T d1vpla_           2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTL-RIISTLIKPSSGIVTVFGKNVVEEPH--EVR-KLI   77 (238)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTCHH--HHH-TTE
T ss_pred             CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHH-HHHhcCCCCCCCEEEECcEecccChH--HHH-hhE
Confidence            48999999999     9999999999999999999999999999 999997        345655433221  222 235


Q ss_pred             eEEEccCceecceecCcchhHHHhh------------------------------------------chhhhccCcEEEE
Q 026304           77 SVVTHDGAKLPCWALPELTSFRQKL------------------------------------------GDDAYAKLDVIGI  114 (240)
Q Consensus        77 ~~v~q~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~l~~~p~lllL  114 (240)
                      +|+||...+++.+++.++..+...+                                          +..++.+|++|+|
T Consensus        78 ~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illL  157 (238)
T d1vpla_          78 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAIL  157 (238)
T ss_dssp             EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             eEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            8999999999999988776554321                                          1125899999999


Q ss_pred             cCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceeeee
Q 026304          115 DEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFTLR  184 (240)
Q Consensus       115 DEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~~~  184 (240)
                      ||||+      +.+++++++++++ +|+|||++|||++++          ..+||||++|++ ++++.|+|+++..+
T Consensus       158 DEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~l~~~----------~~~~drv~vl~~G~iv~~g~~~el~~~  223 (238)
T d1vpla_         158 DEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNMLEV----------EFLCDRIALIHNGTIVETGTVEELKER  223 (238)
T ss_dssp             ESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHH----------TTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence            99988      4579999999987 699999999999999          999999999999 99999999876543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=4.6e-35  Score=246.35  Aligned_cols=156  Identities=17%  Similarity=0.130  Sum_probs=124.3

Q ss_pred             eEEEcceeEee------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           10 AVTTNQVNSGR------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        10 ~l~~~~ls~~~------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      ||+++||||+|      |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++..++.... | +.
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~~-r-~~   77 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLENW-R-SQ   77 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHH-HHHTTSSCCSBSCEEETTEESTTTSCSCC-T-TT
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHHhhCCCCCEEEECCEEeccccHHHH-H-hh
Confidence            68999999999      8999999999999999999999999999 999997        356666554433221 2 23


Q ss_pred             CeEEEccCceecceecCcchhHHH-------------h-----------------------------------hchhhhc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQ-------------K-----------------------------------LGDDAYA  107 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~-------------~-----------------------------------~~~~l~~  107 (240)
                      .+||+|++.+|+. |+.+|..+..             .                                   +++.++.
T Consensus        78 i~~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~  156 (242)
T d1mv5a_          78 IGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR  156 (242)
T ss_dssp             CCEECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred             eEEEccccccCCc-chhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence            5899999988875 5554432110             0                                   0122689


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|||||||+      ...+++.|+++.+  ++|||++|||++.+           ..||||++|++ +++++|++++
T Consensus       157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-----------~~~D~i~vl~~G~iv~~G~~~e  223 (242)
T d1mv5a_         157 NPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTI-----------VDADKIYFIEKGQITGSGKHNE  223 (242)
T ss_dssp             CCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSHHHH-----------HHCSEEEEEETTEECCCSCHHH
T ss_pred             CCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCHHHH-----------HhCCEEEEEECCEEEEECCHHH
Confidence            999999999988      3479999999864  89999999999977           46999999999 9999999876


Q ss_pred             ee
Q 026304          181 FT  182 (240)
Q Consensus       181 ~~  182 (240)
                      +.
T Consensus       224 Ll  225 (242)
T d1mv5a_         224 LV  225 (242)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-34  Score=243.69  Aligned_cols=158  Identities=15%  Similarity=0.123  Sum_probs=125.7

Q ss_pred             eEEEcceeEee--------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhccc
Q 026304           10 AVTTNQVNSGR--------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRY   73 (240)
Q Consensus        10 ~l~~~~ls~~~--------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~   73 (240)
                      .|+++||||+|        |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++..++....++ 
T Consensus        11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~-   88 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVA-ALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR-   88 (251)
T ss_dssp             CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGGBCHHHHHH-
T ss_pred             eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHH-HHHhcccCCCcCEEEECCEecchhhhHHHHH-
Confidence            59999999999        8999999999999999999999999999 999997        46777766554332222 


Q ss_pred             CCCeEEEccCceecceecCcchhHH-----------------------Hh-------------------------hchhh
Q 026304           74 AIDSVVTHDGAKLPCWALPELTSFR-----------------------QK-------------------------LGDDA  105 (240)
Q Consensus        74 ~~~~~v~q~~~~~~~~~~~~~~~~~-----------------------~~-------------------------~~~~l  105 (240)
                       ..+|++|++.+|+. |+.++..+.                       ..                         +++.+
T Consensus        89 -~i~~v~Q~~~lf~~-tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal  166 (251)
T d1jj7a_          89 -QVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL  166 (251)
T ss_dssp             -HEEEECSSCCCCSS-BHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred             -HhhhccccccccCc-chhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence             35899999988754 554433221                       00                         01226


Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCc
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKR  178 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~  178 (240)
                      +.+|++|||||||+      ..++++.|.++.++.++|+|++|||++.+           +.||||++|++ +++..|++
T Consensus       167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~-----------~~aDrI~vl~~G~iv~~Gt~  235 (251)
T d1jj7a_         167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-----------EQADHILFLEGGAIREGGTH  235 (251)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHH-----------HTCSEEEEEETTEEEEEECH
T ss_pred             ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEEECCH
Confidence            89999999999998      34688888888765689999999999876           56999999999 99999998


Q ss_pred             ceee
Q 026304          179 AFFT  182 (240)
Q Consensus       179 ~~~~  182 (240)
                      +++.
T Consensus       236 ~eLl  239 (251)
T d1jj7a_         236 QQLM  239 (251)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=5.9e-34  Score=239.21  Aligned_cols=154  Identities=18%  Similarity=0.129  Sum_probs=123.6

Q ss_pred             EEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCC
Q 026304           11 VTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAI   75 (240)
Q Consensus        11 l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~   75 (240)
                      |+++||||+|       |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++..++....++  .
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~--~   78 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLT-KLIQRFYIPENGQVLIDGHDLALADPNWLRR--Q   78 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHH-HHHTTSSCCSEEEEEETTEETTTSCHHHHHH--H
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHH-HHHHhcCCCCCCEEEECCEEecccchhhhhc--e
Confidence            7899999999       8999999999999999999999999999 999997        45677665544332222  3


Q ss_pred             CeEEEccCceecceecCcchhHHHh-----------------------------------------------hchhhhcc
Q 026304           76 DSVVTHDGAKLPCWALPELTSFRQK-----------------------------------------------LGDDAYAK  108 (240)
Q Consensus        76 ~~~v~q~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~l~~~  108 (240)
                      .+||+|++.+|+. |+.+|+.+...                                               +++.++.+
T Consensus        79 i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~  157 (241)
T d2pmka1          79 VGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  157 (241)
T ss_dssp             EEEECSSCCCTTS-BHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEecccccCCc-cccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcc
Confidence            5899999988764 66555432100                                               01226899


Q ss_pred             CcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          109 LDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       109 p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++|||||||+      ...+++.|+++.+  ++|+|++||+++.+           ..||||++|++ +++..|+++++
T Consensus       158 p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-----------~~~D~i~vl~~G~Iv~~G~~~el  224 (241)
T d2pmka1         158 PKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTV-----------KNADRIIVMEKGKIVEQGKHKEL  224 (241)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSGGGG-----------TTSSEEEEEETTEEEEEECHHHH
T ss_pred             cchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCHHHH-----------HhCCEEEEEECCEEEEECCHHHH
Confidence            99999999998      3478889988864  89999999999877           67999999999 99999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.98  E-value=8.8e-34  Score=236.97  Aligned_cols=155  Identities=19%  Similarity=0.070  Sum_probs=127.2

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      .|++ ++.++|    + ||||++. +|+++|+||||||||||+ ++|+|+        .++|+++...++.   + +..+
T Consensus         2 ~l~v-~~~k~~g~~~~-~vs~~~~-~e~~~liGpnGaGKSTll-~~i~Gl~~p~~G~I~~~G~~i~~~~~~---~-r~ig   73 (240)
T d2onka1           2 FLKV-RAEKRLGNFRL-NVDFEMG-RDYCVLLGPTGAGKSVFL-ELIAGIVKPDRGEVRLNGADITPLPPE---R-RGIG   73 (240)
T ss_dssp             CEEE-EEEEEETTEEE-EEEEEEC-SSEEEEECCTTSSHHHHH-HHHHTSSCCSEEEEEETTEECTTSCTT---T-SCCB
T ss_pred             EEEE-EEEEEECCEEE-EEEEEeC-CEEEEEECCCCChHHHHH-HHHHcCCCCCceEEEECCEECCcCCHH---H-cCce
Confidence            3667 567777    4 7888885 689999999999999999 999997        4678777655432   2 2358


Q ss_pred             EEEccCceecceecCcchhHHHh-----------------h-----------------------chhhhccCcEEEEcCc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQK-----------------L-----------------------GDDAYAKLDVIGIDEA  117 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~-----------------~-----------------------~~~l~~~p~lllLDEP  117 (240)
                      |+||++.+++.+|+.+|+.+..+                 +                       +..++.+|++|+||||
T Consensus        74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEP  153 (240)
T d2onka1          74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP  153 (240)
T ss_dssp             CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred             eeccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence            99999999999999887655311                 0                       1236899999999999


Q ss_pred             cC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          118 QF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       118 ~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                      |+      +.++++.++++.++.|+|||++|||++++          ..+||||++|++ +++++|+++++.
T Consensus       154 ts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~----------~~~adri~vm~~G~ii~~G~~~el~  215 (240)
T d2onka1         154 LSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEA----------AMLADEVAVMLNGRIVEKGKLKELF  215 (240)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHH----------HHHCSEEEEEETTEEEEEECHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHH----------HHhCCEEEEEECCEEEEEecHHHHh
Confidence            88      45899999999875799999999999999          999999999999 999999997653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.9e-33  Score=233.15  Aligned_cols=159  Identities=16%  Similarity=0.126  Sum_probs=118.2

Q ss_pred             ceEEEcceeEee-ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCch-------hCCceEEeeccchhcccCCCeEEE
Q 026304            9 AAVTTNQVNSGR-DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSES-------DNGRNIAMIKSSKDTRYAIDSVVT   80 (240)
Q Consensus         9 ~~l~~~~ls~~~-l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-------~~g~~i~~~~~~~~~~~~~~~~v~   80 (240)
                      .+|+++|++++| |++|||+|++||+++|+||||||||||+ ++|+|+.       ++|+++..+++.....  ..++++
T Consensus         2 ~il~~~dv~~~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl-~~l~Gl~~~~G~I~~~g~~i~~~~~~~~~~--~~~~~~   78 (231)
T d1l7vc_           2 IVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLL-ARMAGMTSGKGSIQFAGQPLEAWSATKLAL--HRAYLS   78 (231)
T ss_dssp             EEEEEEEECCTTTSCSEEEEEETTCEEECBCCTTSSHHHHH-HHHHTSCCCSSEEEESSSBGGGSCHHHHHH--HEEEEC
T ss_pred             eEEEEECcccCceecCEEEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCceEEEECCEECCcCCHHHHHh--hceeee
Confidence            479999999998 9999999999999999999999999999 9999973       3444443332222111  136777


Q ss_pred             ccCceecceecCcchhHH----------H----h-----------------------hchhhhc-------cCcEEEEcC
Q 026304           81 HDGAKLPCWALPELTSFR----------Q----K-----------------------LGDDAYA-------KLDVIGIDE  116 (240)
Q Consensus        81 q~~~~~~~~~~~~~~~~~----------~----~-----------------------~~~~l~~-------~p~lllLDE  116 (240)
                      |........++.++..+.          .    .                       ++..+++       +|++|||||
T Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDE  158 (231)
T d1l7vc_          79 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE  158 (231)
T ss_dssp             SCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred             ccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcC
Confidence            654432223333222111          0    0                       0111344       679999999


Q ss_pred             ccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCccee
Q 026304          117 AQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFF  181 (240)
Q Consensus       117 P~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~  181 (240)
                      |++      ...+.++++++++ .|+|||++|||++++          ..+|||+++|++ ++++.|+++++
T Consensus       159 Pt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl~~~----------~~~~dri~vl~~G~iv~~G~~~ev  219 (231)
T d1l7vc_         159 PMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDLNHT----------LRHAHRAWLLKGGKMLASGRREEV  219 (231)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCHHHH----------HHHCSBCCBEETTEECCCSBHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHH----------HHHCCEEEEEECCEEEEECCHHHH
Confidence            988      4578999999987 699999999999999          999999999999 99999998764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.97  E-value=2.9e-32  Score=230.56  Aligned_cols=156  Identities=13%  Similarity=0.048  Sum_probs=121.5

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++||||+|       |+||||+|++||+++|+||||||||||+ ++|+|+        .++|+++..++.... | .
T Consensus        13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~~-r-~   89 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIA-SLITRFYDIDEGHILMDGHDLREYTLASL-R-N   89 (253)
T ss_dssp             CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHH-HHHTTTTCCSEEEEEETTEETTTBCHHHH-H-H
T ss_pred             EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHH-HHHhcccCCCccEEEECCcccchhhhhhh-h-h
Confidence            59999999999       8999999999999999999999999999 999997        356666554443322 2 2


Q ss_pred             CCeEEEccCceecceecCcchh-----------------------HHHh-------------------------hchhhh
Q 026304           75 IDSVVTHDGAKLPCWALPELTS-----------------------FRQK-------------------------LGDDAY  106 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~-----------------------~~~~-------------------------~~~~l~  106 (240)
                      ..+|++|++.++... +.++..                       +...                         +++.++
T Consensus        90 ~i~~v~Q~~~l~~~t-i~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~  168 (253)
T d3b60a1          90 QVALVSQNVHLFNDT-VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL  168 (253)
T ss_dssp             TEEEECSSCCCCSSB-HHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred             eEEEEeeccccCCcc-hhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHh
Confidence            358999998776542 221111                       1100                         012368


Q ss_pred             ccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcc
Q 026304          107 AKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRA  179 (240)
Q Consensus       107 ~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~  179 (240)
                      .+|++|||||||+      ...+++.|+++.+  ++|+|++|||++.+           ..||||++|++ +++++|+++
T Consensus       169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l~~~-----------~~~D~v~vl~~G~Iv~~G~~~  235 (253)
T d3b60a1         169 RDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRLSTI-----------EQADEIVVVEDGIIVERGTHS  235 (253)
T ss_dssp             HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCGGGT-----------TTCSEEEEEETTEEEEEECHH
T ss_pred             cCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-----------HhCCEEEEEECCEEEEECCHH
Confidence            9999999999998      3478889988864  78999999999877           57999999999 999999987


Q ss_pred             eee
Q 026304          180 FFT  182 (240)
Q Consensus       180 ~~~  182 (240)
                      ++.
T Consensus       236 eLl  238 (253)
T d3b60a1         236 ELL  238 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=1.4e-32  Score=232.42  Aligned_cols=156  Identities=15%  Similarity=0.071  Sum_probs=123.9

Q ss_pred             eEEEcceeEee-------ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccC
Q 026304           10 AVTTNQVNSGR-------DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYA   74 (240)
Q Consensus        10 ~l~~~~ls~~~-------l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~   74 (240)
                      .|+++||+|+|       |+||||+|++||+++|+||||||||||+ ++|.|+        .++|.++..++.... | .
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl-~ll~gl~~p~~G~I~i~g~~i~~~~~~~l-r-~   92 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLI-NLIPRFYDVTSGQILIDGHNIKDFLTGSL-R-N   92 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHH-TTTTTSSCCSEEEEEETTEEGGGSCHHHH-H-H
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHH-HHHHhcCCccccccccCCEEcccCCHHHh-h-h
Confidence            59999999999       8999999999999999999999999999 999997        356666655443322 2 2


Q ss_pred             CCeEEEccCceecceecCcchhHHH----------------------h-------------------------hchhhhc
Q 026304           75 IDSVVTHDGAKLPCWALPELTSFRQ----------------------K-------------------------LGDDAYA  107 (240)
Q Consensus        75 ~~~~v~q~~~~~~~~~~~~~~~~~~----------------------~-------------------------~~~~l~~  107 (240)
                      ..+|++|++.+|+. |+.+|+.+..                      .                         +++.++.
T Consensus        93 ~i~~v~Q~~~lf~~-Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~  171 (255)
T d2hyda1          93 QIGLVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  171 (255)
T ss_dssp             TEEEECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             eeeeeeccccCCCC-CHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            35899999888764 6655543210                      0                         0122589


Q ss_pred             cCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcce
Q 026304          108 KLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAF  180 (240)
Q Consensus       108 ~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~  180 (240)
                      +|++|+|||||+      ...+++.|.++.+  ++|+|++||+++.+           ..||||++|++ +++..|++++
T Consensus       172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~~~~-----------~~~D~ii~l~~G~iv~~G~~~e  238 (255)
T d2hyda1         172 NPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRLSTI-----------THADKIVVIENGHIVETGTHRE  238 (255)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSGGGT-----------TTCSEEEEEETTEEEEEECHHH
T ss_pred             CCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHH-----------HhCCEEEEEECCEEEEECCHHH
Confidence            999999999988      3468888888754  78999999999977           67999999999 9999999876


Q ss_pred             ee
Q 026304          181 FT  182 (240)
Q Consensus       181 ~~  182 (240)
                      +.
T Consensus       239 Ll  240 (255)
T d2hyda1         239 LI  240 (255)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=1.1e-28  Score=201.72  Aligned_cols=139  Identities=13%  Similarity=0.117  Sum_probs=103.4

Q ss_pred             eEEEcceeEee----ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc--------hhCCceEEeeccchhcccCCCe
Q 026304           10 AVTTNQVNSGR----DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE--------SDNGRNIAMIKSSKDTRYAIDS   77 (240)
Q Consensus        10 ~l~~~~ls~~~----l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl--------~~~g~~i~~~~~~~~~~~~~~~   77 (240)
                      .|+++|||++|    |+|+||+|++|++++|+||||||||||+ ++|+|+        .++|+++..      .+ ...+
T Consensus         2 ~lev~~ls~~y~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl-~~i~gl~~p~~G~I~~~g~~i~~------~~-~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLL-KTISTYLKPLKGEIIYNGVPITK------VK-GKIF   73 (200)
T ss_dssp             EEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHH-HHHTTSSCCSEEEEEETTEEGGG------GG-GGEE
T ss_pred             eEEEEEEEEEeCCeEEeceEEEEcCCCEEEEECCCCChHHHHH-HHHhcccccCCCEEEECCEehhH------hc-CcEE
Confidence            48999999999    9999999999999999999999999999 999997        234443321      11 1246


Q ss_pred             EEEccCceecceecCcchhHHHhh---------------------------------------chhhhccCcEEEEcCcc
Q 026304           78 VVTHDGAKLPCWALPELTSFRQKL---------------------------------------GDDAYAKLDVIGIDEAQ  118 (240)
Q Consensus        78 ~v~q~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~l~~~p~lllLDEP~  118 (240)
                      |++|...++..+++.++..+...+                                       +..++.+|+++||||||
T Consensus        74 ~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_          74 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             EEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            888877666666665544332211                                       12258999999999998


Q ss_pred             C------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          119 F------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       119 ~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +      +..+++.|.++.++.+++||+++|+              ..+||++.+|++
T Consensus       154 ~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~--------------l~~~D~~~~l~~  197 (200)
T d1sgwa_         154 VAIDEDSKHKVLKSILEILKEKGIVIISSREE--------------LSYCDVNENLHK  197 (200)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC--------------CTTSSEEEEGGG
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCEEEEEEech--------------hhhcchhhheee
Confidence            8      4578999999877556666666665              357999988864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.6e-29  Score=216.58  Aligned_cols=151  Identities=20%  Similarity=0.154  Sum_probs=106.8

Q ss_pred             eEEEcceeEee---ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchh-CCceEEeeccchhcccCCCeEEEccCce
Q 026304           10 AVTTNQVNSGR---DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESD-NGRNIAMIKSSKDTRYAIDSVVTHDGAK   85 (240)
Q Consensus        10 ~l~~~~ls~~~---l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~-~g~~i~~~~~~~~~~~~~~~~v~q~~~~   85 (240)
                      .++++++++.+   |+||||+|++||+++|+||||||||||+ ++|+|+.- ..-.+..        .+..+|++|.+.+
T Consensus        38 ~i~~~~~~~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl-~~i~Gl~~p~~G~I~~--------~g~i~~v~Q~~~l  108 (281)
T d1r0wa_          38 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLL-MLILGELEASEGIIKH--------SGRVSFCSQFSWI  108 (281)
T ss_dssp             --CHHHHHHTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHH-HHHHTSSCCSEEEEEC--------CSCEEEECSSCCC
T ss_pred             cEEEEEcCCCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHH-HHHhCCCcCCCcEEEE--------CCEEEEEeccccc
Confidence            45556665544   9999999999999999999999999999 99999732 1112211        1124788888877


Q ss_pred             ecceecCcchhHHH----------------------------------------------hhchhhhccCcEEEEcCccC
Q 026304           86 LPCWALPELTSFRQ----------------------------------------------KLGDDAYAKLDVIGIDEAQF  119 (240)
Q Consensus        86 ~~~~~~~~~~~~~~----------------------------------------------~~~~~l~~~p~lllLDEP~~  119 (240)
                      ++. ++.+++.+..                                              .++..++.+|++|||||||+
T Consensus       109 ~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts  187 (281)
T d1r0wa_         109 MPG-TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFG  187 (281)
T ss_dssp             CSE-EHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCC
T ss_pred             cCc-eeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccc
Confidence            664 4544432210                                              00123689999999999998


Q ss_pred             -h-----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eeeccCCcceee
Q 026304          120 -F-----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCELCGKRAFFT  182 (240)
Q Consensus       120 -~-----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~~~g~~~~~~  182 (240)
                       .     .++++.+..... .++|+|++||+++.+           .+||||++|++ ++++.|+++++.
T Consensus       188 ~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~~~l-----------~~aDrI~vl~~G~i~~~Gt~~eL~  245 (281)
T d1r0wa_         188 YLDVFTEEQVFESCVCKLM-ANKTRILVTSKMEHL-----------RKADKILILHQGSSYFYGTFSELQ  245 (281)
T ss_dssp             SSCHHHHHHHHHHCCCCCT-TTSEEEEECSCHHHH-----------HTCSEEEEEETTEEEEEECHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhh-CCCEEEEEechHHHH-----------HhCCEEEEEECCEEEEECCHHHHh
Confidence             2     234443222223 578999999999766           68999999999 999999987653

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.79  E-value=4e-19  Score=136.50  Aligned_cols=136  Identities=34%  Similarity=0.617  Sum_probs=111.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhcc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAK  108 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~  108 (240)
                      ..|.+..|+|||.|||||-|++.+..+...|+++..+.+..+.|++...++++++...++..+.+...+....    ..+
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~~~~~~~~~~----~~~   80 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYF----EED   80 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHC----CTT
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccccccccceeeecccceEEEEEecchhhhhhhh----ccc
Confidence            4799999999999999999989998888999999999998888887667888888888888777766654432    468


Q ss_pred             CcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeec
Q 026304          109 LDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLT  169 (240)
Q Consensus       109 p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~  169 (240)
                      ++++++||.||+. .+.+.+..+.+ .|++|++++.|.++.+++|+.+.+|..+||+|..|+
T Consensus        81 ~dvI~IDE~QFf~d~~~~~~~~l~~-~g~~Viv~GLd~Df~~~~F~~~~~Ll~~Ad~v~kLk  141 (141)
T d1xx6a1          81 TEVIAIDEVQFFDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ  141 (141)
T ss_dssp             CSEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred             ccEEEEeehhhccccHHHHHHhhee-CCcEEEEEEeccccccCccchHHHHHhhcCeeEECC
Confidence            9999999999975 46677888876 799999999999999999999999999999998764

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.3e-19  Score=133.52  Aligned_cols=132  Identities=46%  Similarity=0.760  Sum_probs=101.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKL  109 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p  109 (240)
                      +|.+..|+|||.|||||.|++.+..+...|+.+..+++..+.|+.. ..+.......++..+........     ...++
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~   74 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSS-SFCTHDRNTMEALPACLLRDVAQ-----EALGV   74 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC---------------CEEESSGGGGHH-----HHHTC
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCcc-eeeecCCCcceeeeeechhhhhh-----hhccc
Confidence            5999999999999999999899988888999999999888888763 34444444444444444333222     24689


Q ss_pred             cEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          110 DVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       110 ~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      +++++||.||+.++.+.+..+.+ .|++|++++.|.++.+++|+.+.+|.++||+|..|
T Consensus        75 d~I~IDEaQFf~dl~~~~~~~~~-~~~~Viv~GLd~Df~~~~F~~~~~Ll~~Ad~I~kL  132 (133)
T d1xbta1          75 AVIGIDEGQFFPDIVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKL  132 (133)
T ss_dssp             SEEEESSGGGCTTHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEEC
T ss_pred             ceEEeehhHHHHHHHHHHHHHHh-cCCcEEEEEeccccccCcchhHHHHHHhcCEEEec
Confidence            99999999998888888888876 79999999999999999999999999999999876

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=99.73  E-value=8.2e-18  Score=128.84  Aligned_cols=136  Identities=32%  Similarity=0.533  Sum_probs=109.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhc-hhhhccC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLG-DDAYAKL  109 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~-~~l~~~p  109 (240)
                      |.+..|+|||.|||||-|++.+..+...|+++..+++..+.|+.. .++++.+...++..+.....+...+. .....++
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~-~i~s~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIR-NIQSRTGTSLPSVEVESAPEILNYIMSNSFNDET   80 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCS-SCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccc-eEEcccCceeeeEEeccchhhHHHHHhhccccCc
Confidence            789999999999999977799988888999999999888888653 46677777777776666555444332 2234589


Q ss_pred             cEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          110 DVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       110 ~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      +++++||.||+. .+.+.+..+.+ .|++|++++.|.++.+++|+.+.+|.++||.|..|
T Consensus        81 dvI~IDE~QFf~d~i~~~~~~~~~-~g~~Viv~GLd~Df~~~~F~~~~~Li~~Ad~V~kL  139 (139)
T d2b8ta1          81 KVIGIDEVQFFDDRICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL  139 (139)
T ss_dssp             CEEEECSGGGSCTHHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred             CEEEechhhhcchhHHHHHHHHHh-cCceEEEEEeccccccCcCccHHHHHHhhCeEEeC
Confidence            999999999975 45666666665 79999999999999999999999999999999764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.47  E-value=7.7e-14  Score=108.96  Aligned_cols=58  Identities=19%  Similarity=0.127  Sum_probs=45.3

Q ss_pred             hhccCcEEEEcCccC----hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc-eee
Q 026304          105 AYAKLDVIGIDEAQF----FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA-RCE  173 (240)
Q Consensus       105 l~~~p~lllLDEP~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~-~~~  173 (240)
                      ...+|++|++|||..    ...+.+.+.++.++.+.++++++|+...           ..+|+++..+.+ ++.
T Consensus        96 ~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~-----------~~~~~~i~~~~~~~i~  158 (178)
T d1ye8a1          96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDV-----------HPLVKEIRRLPGAVLI  158 (178)
T ss_dssp             HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCC-----------SHHHHHHHTCTTCEEE
T ss_pred             HhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHH-----------HHhhceEEEEeCCEEE
Confidence            568999999999965    2367777777776578999999999754           478888888877 554

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=2.2e-08  Score=81.85  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=29.2

Q ss_pred             hccCcEEEEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ..+..++|+||+..       ..-....+..+....+..++++||..+..
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~  167 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT  167 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence            45667999999933       12344566667654567889999987655

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.63  E-value=2.4e-08  Score=83.65  Aligned_cols=50  Identities=12%  Similarity=0.062  Sum_probs=40.1

Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      ...+.++++|||.+      +..+.+.|++..+  +.-||++||.+.++           ..+|+++.+
T Consensus       239 ~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp~~~-----------~~~d~~~~v  294 (308)
T d1e69a_         239 IKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNKIVM-----------EAADLLHGV  294 (308)
T ss_dssp             TSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCTTGG-----------GGCSEEEEE
T ss_pred             hccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHHH-----------HhcccEEEE
Confidence            56788999999965      4578888888764  57899999999887           678888664

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.60  E-value=2.6e-08  Score=80.98  Aligned_cols=42  Identities=7%  Similarity=-0.098  Sum_probs=29.9

Q ss_pred             hccCcEEEEcCcc---C----hHHHHHHHHHHHhcCCCEEEEEecChhhh
Q 026304          106 YAKLDVIGIDEAQ---F----FEDLYEFCCNAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       106 ~~~p~lllLDEP~---~----~~~i~~~l~~l~~~~g~tvi~vtHd~~~~  148 (240)
                      +.+..++|+||+.   +    ..-...++..+.+ .+..++++||..+..
T Consensus       112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~eL~  160 (224)
T d1ewqa2         112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELT  160 (224)
T ss_dssp             CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHH
T ss_pred             CCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeechhhh
Confidence            4566799999993   3    1234556666666 577899999997765

>d1xbta2 g.39.1.14 (A:151-191) Thymidine kinase, TK1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.5e-08  Score=58.88  Aligned_cols=39  Identities=46%  Similarity=0.762  Sum_probs=36.1

Q ss_pred             eeeccCCcceeeeeecCCCcEEEeCCcceEEeecchhhc
Q 026304          171 RCELCGKRAFFTLRKTEETETEIIGGADVYMPVCRQHYV  209 (240)
Q Consensus       171 ~~~~~g~~~~~~~~~~~~~~~~~~g~~~~y~~~c~~~~~  209 (240)
                      .|..||.++.|+.|...+.+++.+|+.|.|.++||+||.
T Consensus         2 vC~~Cg~~A~ft~R~~~~~~~v~IGg~d~Y~~~CR~cy~   40 (41)
T d1xbta2           2 VCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF   40 (41)
T ss_dssp             ECTTTCSEECEEEECSCCCSSCCCCSTTTEEEECHHHHT
T ss_pred             CCCCCCCcceEEEEEcCCCCEEEECCCCcEEehhhhhhc
Confidence            367799999999999999999999999999999999996

>d1xx6a2 g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.33  E-value=1e-07  Score=58.44  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=30.8

Q ss_pred             eeeccCCcceeeeeecCC------CcEEEeCCcceEEeecchhhccC
Q 026304          171 RCELCGKRAFFTLRKTEE------TETEIIGGADVYMPVCRQHYVNG  211 (240)
Q Consensus       171 ~~~~~g~~~~~~~~~~~~------~~~~~~g~~~~y~~~c~~~~~~~  211 (240)
                      .|..||.++.++.|+.++      ++++.+|+++.|+++||+||...
T Consensus         2 vC~~CG~~A~~t~R~~~~~~~~~~~~~v~IGg~e~Y~~~CR~~~~~p   48 (49)
T d1xx6a2           2 ICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCRKCHVVP   48 (49)
T ss_dssp             ECTTTSSEECEEEEEETTEECCTTCCCC-----EEEEEECTTTCCCC
T ss_pred             CCCcCCCcceeEEEEcCCCCcccCCCeEEECCCccEEeechhcccCC
Confidence            366799999999999763      67899999999999999999764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.21  E-value=4.1e-07  Score=73.29  Aligned_cols=144  Identities=14%  Similarity=0.044  Sum_probs=76.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch-----hcccCCCeEEE----ccCce--eccee-cCcc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK-----DTRYAIDSVVT----HDGAK--LPCWA-LPEL   94 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~-----~~~~~~~~~v~----q~~~~--~~~~~-~~~~   94 (240)
                      =+++|.++.|.||+|+|||||+++++....-.|..+..+....     ..+....++-.    +...+  ..... ....
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL  101 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence            3899999999999999999999677666555565555443211     00000001100    00000  00000 0111


Q ss_pred             hhHHHhhch-hhhccCcEEEEcCccC---------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccc
Q 026304           95 TSFRQKLGD-DAYAKLDVIGIDEAQF---------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADT  164 (240)
Q Consensus        95 ~~~~~~~~~-~l~~~p~lllLDEP~~---------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~  164 (240)
                      ......+.. ..-.+|+++++|--+.         ....+..+..++++.+.+++++.|-.............+..+||-
T Consensus       102 ~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~  181 (242)
T d1tf7a2         102 EDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDT  181 (242)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSE
T ss_pred             HHHHHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecce
Confidence            111111111 1235899999997533         123444444555557999999888543322222233445778999


Q ss_pred             eeeecc
Q 026304          165 VTKLTA  170 (240)
Q Consensus       165 i~~l~~  170 (240)
                      ++.++.
T Consensus       182 vi~l~~  187 (242)
T d1tf7a2         182 IILLQY  187 (242)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            988865

>d2b8ta2 g.39.1.14 (A:150-216) Thymidine kinase, TK1, C-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Type II thymidine kinase zinc finger
domain: Thymidine kinase, TK1, C-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=98.11  E-value=4.7e-07  Score=59.05  Aligned_cols=41  Identities=34%  Similarity=0.626  Sum_probs=35.8

Q ss_pred             eeeccCCcceeeeeecC------CCcEEEeCCcceEEeecchhhccC
Q 026304          171 RCELCGKRAFFTLRKTE------ETETEIIGGADVYMPVCRQHYVNG  211 (240)
Q Consensus       171 ~~~~~g~~~~~~~~~~~------~~~~~~~g~~~~y~~~c~~~~~~~  211 (240)
                      .|..||.++.++.|+.+      .++++.+|+.+.|.++||+||...
T Consensus         3 IC~~CG~~A~~t~R~~~~~~~~~~g~~i~IGg~e~Y~a~CR~cy~~p   49 (67)
T d2b8ta2           3 ICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHKVP   49 (67)
T ss_dssp             ECTTTCSEECEEEEEETTEECCTTSCSCCCCSTTTEEEECGGGCCCT
T ss_pred             CcccCCCcceeEEEEeCCCCcccCCCEEEeCCCccEeehhhhhccCC
Confidence            57789999999999975      467889999999999999999854

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=98.07  E-value=1e-05  Score=66.36  Aligned_cols=150  Identities=16%  Similarity=0.103  Sum_probs=79.7

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeeccchh-----cccC--CCeEEEc-----------
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIKSSKD-----TRYA--IDSVVTH-----------   81 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~~~~~-----~~~~--~~~~v~q-----------   81 (240)
                      |+.+..=+.+|+++.|.|++|+|||||++.++..+ .-.|.++..++....     .|.-  ..++-..           
T Consensus        25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  104 (277)
T d1cr2a_          25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDSLKREIIE  104 (277)
T ss_dssp             HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCCGGGCHHHHHHHHH
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccchhhHHhHHHHHhhcCCchhhcccccchhh
Confidence            44444458899999999999999999985555444 235666665542210     0000  0000000           


Q ss_pred             -------------cCce--ecceecCcchhHHHhh-chhhhccCcEEEEcCccC-------------hHHHHHHHHHHHh
Q 026304           82 -------------DGAK--LPCWALPELTSFRQKL-GDDAYAKLDVIGIDEAQF-------------FEDLYEFCCNAAD  132 (240)
Q Consensus        82 -------------~~~~--~~~~~~~~~~~~~~~~-~~~l~~~p~lllLDEP~~-------------~~~i~~~l~~l~~  132 (240)
                                   ...+  +..........+.... ......+|+++++|=.+.             ...++..|+++++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~  184 (277)
T d1cr2a_         105 NGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAK  184 (277)
T ss_dssp             TSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhhccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhh
Confidence                         0000  0000000000011110 001235799999994322             2356777888888


Q ss_pred             cCCCEEEEEecChhhhh------------cccchHHHHHhhccceeeecc
Q 026304          133 HDGKTVVVAGLDGDYLR------------RSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       133 ~~g~tvi~vtHd~~~~~------------~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      +.+++|++++|-.....            .-+..+..+...||-++.|..
T Consensus       185 ~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl~l~r  234 (277)
T d1cr2a_         185 STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALER  234 (277)
T ss_dssp             HHCCEEEEEEECC---------------------CHHHHHHCSEEEEEEC
T ss_pred             hccccceeecccccccccccccccccchhhhcccccchhhhCcEEEEEEe
Confidence            78999999999542211            234455667888999999865

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1.1e-05  Score=66.58  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=71.2

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccch------hcccCCCeEEEccCceecceecCcchhHHH
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSK------DTRYAIDSVVTHDGAKLPCWALPELTSFRQ   99 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~------~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~   99 (240)
                      -=+++|.++-|.||+|||||||++.++....-.|..+.++....      ..+.+   +-...-......++++..+...
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~G---vd~d~v~~~~~~~~E~~~~~i~  125 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLG---VDIDNLLCSQPDTGEQALEICD  125 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT---CCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhC---CCHHHEEEecCCCHHHHHHHHH
Confidence            46889999999999999999999677766555555544443211      11111   1011101111122222222222


Q ss_pred             hhchhhhccCcEEEEcCccC----------------------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchH--
Q 026304          100 KLGDDAYAKLDVIGIDEAQF----------------------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV--  155 (240)
Q Consensus       100 ~~~~~l~~~p~lllLDEP~~----------------------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~--  155 (240)
                      .+..  -.+++++++|=-++                      ....+..+..++...+.++|++.|-.......|+..  
T Consensus       126 ~l~~--~~~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~  203 (263)
T d1u94a1         126 ALAR--SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPET  203 (263)
T ss_dssp             HHHH--HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------------
T ss_pred             HHHh--cCCCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhccCceEEEEEEEEeccccccCCCcc
Confidence            2211  24688999996532                      012333344454457899999999765555455432  


Q ss_pred             ----HHHHhhccceeeecc
Q 026304          156 ----LDIIPLADTVTKLTA  170 (240)
Q Consensus       156 ----~~L~~~ad~i~~l~~  170 (240)
                          ..+..+++-++.|..
T Consensus       204 ~~GG~al~~~~~~rl~l~k  222 (263)
T d1u94a1         204 TTGGNALKFYASVRLDIRR  222 (263)
T ss_dssp             CTTCSHHHHHCSEEEEEEE
T ss_pred             ccccchhheeeEEEEEEEe
Confidence                223556666676654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.4e-07  Score=72.94  Aligned_cols=31  Identities=16%  Similarity=0.021  Sum_probs=27.2

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +++.++++.+| +++|+|||||||||+| .+|.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil-~Ai~   45 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTM-AAFV   45 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHH-HHHH
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHH-HHHH
Confidence            67778888876 9999999999999999 8775

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.90  E-value=1.3e-05  Score=67.90  Aligned_cols=106  Identities=16%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhccc-CCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRY-AIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~-~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      ..|.-+.|.||.|||||||| +.|.++......+..+........ ....++.        +.......+...+...+-+
T Consensus       164 ~~~~nili~G~tgSGKTT~l-~al~~~i~~~~rivtiEd~~El~l~~~~~~~~--------~~~~~~~~~~~ll~~~lR~  234 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYI-KSIMEFIPKEERIISIEDTEEIVFKHHKNYTQ--------LFFGGNITSADCLKSCLRM  234 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEEESSCCCCCSSCSSEEE--------EECBTTBCHHHHHHHHTTS
T ss_pred             HhCCCEEEEeeccccchHHH-HHHhhhcccccceeeccchhhhhcccccccce--------eccccchhHHHHHHHHhcc
Confidence            34555899999999999999 999886544444443321111111 0011111        1111122233333333457


Q ss_pred             cCcEEEEcCccChHHHHHHHHHHHhcCCC-EEEEEecChh
Q 026304          108 KLDVIGIDEAQFFEDLYEFCCNAADHDGK-TVVVAGLDGD  146 (240)
Q Consensus       108 ~p~lllLDEP~~~~~i~~~l~~l~~~~g~-tvi~vtHd~~  146 (240)
                      +|+.+++.|-... +..++++.+.  .|. .++.+.|-.+
T Consensus       235 ~pd~iivgEiR~~-ea~~~l~a~~--tGh~g~~tT~Ha~s  271 (323)
T d1g6oa_         235 RPDRIILGELRSS-EAYDFYNVLC--SGHKGTLTTLHAGS  271 (323)
T ss_dssp             CCSEEEESCCCST-HHHHHHHHHH--TTCSCEEEEECCSS
T ss_pred             CCCcccCCccCch-hHHHHHHHHH--hcCCcEEEEECCCC
Confidence            9999999999764 4567776554  354 4788888654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=6.4e-06  Score=61.91  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC-chhCCceEEe
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAM   64 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~   64 (240)
                      +++|+|++|||||||+ +.|.. +.-.|..+..
T Consensus         4 vi~itG~~GSGKTTL~-~~L~~~l~~~g~~v~v   35 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLL-KKLIPALCARGIRPGL   35 (170)
T ss_dssp             EEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEE
T ss_pred             EEEEEcCCCCCHHHHH-HHHHHHHHHCCCeEEE
Confidence            7899999999999999 66654 3445554443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=6.7e-06  Score=62.40  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=25.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchhCCceEEee
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMI   65 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~   65 (240)
                      .+++|+|++|||||||+.+++..+.-.|..+...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vi   35 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV   35 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            3789999999999999944555555666666554

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.75  E-value=9.6e-05  Score=64.22  Aligned_cols=107  Identities=21%  Similarity=0.190  Sum_probs=61.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYA  107 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~  107 (240)
                      .++-++.+.||.||||||++ ..+.... -.++++..+.......  ..++. |..     ........+...+...+=+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl-~~~l~~~~~~~~~i~tiEdPiE~~--~~~~~-q~~-----v~~~~~~~~~~~l~~~lR~  226 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTVEDPIEFD--IDGIG-QTQ-----VNPRVDMTFARGLRAILRQ  226 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEEESSCCSC--CSSSE-EEE-----CBGGGTBCHHHHHHHHGGG
T ss_pred             hhhceEEEEcCCCCCccHHH-HHHhhhhcCCCceEEEeccCcccc--cCCCC-eee-----ecCCcCCCHHHHHHHHHhh
Confidence            45679999999999999999 6665432 2234433332111111  11111 100     0111222344444445568


Q ss_pred             cCcEEEEcCccChHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304          108 KLDVIGIDEAQFFEDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus       108 ~p~lllLDEP~~~~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                      +||+|++.|...... .....+.+. .|..|+.+-|-.+
T Consensus       227 dPDvi~igEiRd~~t-a~~a~~aa~-tGhlV~tTlHa~~  263 (401)
T d1p9ra_         227 DPDVVMVGEIRDLET-AQIAVQASL-TGHLVMSTLHTNT  263 (401)
T ss_dssp             CCSEEEESCCCSHHH-HHHHHHHHH-TTCEEEEEECCSS
T ss_pred             cCCEEEecCcCChHH-HHHHHHHHh-cCCeEEEEeccCc
Confidence            999999999965433 334446666 7999888888644

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.75  E-value=0.00024  Score=55.50  Aligned_cols=143  Identities=10%  Similarity=0.023  Sum_probs=70.3

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC-chhCCceEEeeccch---hc-----ccC--------CCeEEE-ccCceecc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAMIKSSK---DT-----RYA--------IDSVVT-HDGAKLPC   88 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~~~~~~---~~-----~~~--------~~~~v~-q~~~~~~~   88 (240)
                      -+++|+++.|.|++|+|||||++.++.. ..-.+..+.......   ..     ...        ...... ........
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG  101 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchhh
Confidence            4899999999999999999998554443 222333333322110   00     000        000111 00000000


Q ss_pred             eecCc---chhHHHhhchh-hhccCcEEEEcCccC----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccch
Q 026304           89 WALPE---LTSFRQKLGDD-AYAKLDVIGIDEAQF----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGS  154 (240)
Q Consensus        89 ~~~~~---~~~~~~~~~~~-l~~~p~lllLDEP~~----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~  154 (240)
                      .....   ...+...+... --.+|+++++|=-+.          ....+..+.+..++.+.++++++|..... .....
T Consensus       102 ~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  180 (242)
T d1tf7a1         102 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY-GPIAR  180 (242)
T ss_dssp             CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS-SCSST
T ss_pred             hhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccc-ccccc
Confidence            00111   11111111111 135799999996643          12333333344444789999998865432 22222


Q ss_pred             HHHHHhhccceeeecc
Q 026304          155 VLDIIPLADTVTKLTA  170 (240)
Q Consensus       155 ~~~L~~~ad~i~~l~~  170 (240)
                      ...+...+|.++.+..
T Consensus       181 ~~~~~~~~d~i~~~~~  196 (242)
T d1tf7a1         181 YGVEEFVSDNVVILRN  196 (242)
T ss_dssp             TSCHHHHCSEEEEEEE
T ss_pred             CcceeeeccEEEEEEE
Confidence            3334567888887754

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.72  E-value=6.7e-06  Score=63.47  Aligned_cols=23  Identities=39%  Similarity=0.716  Sum_probs=20.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      |.+++|+||+||||||++ +.|..
T Consensus         2 G~iivl~GpsG~GK~tl~-~~L~~   24 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVV-RCLRE   24 (182)
T ss_dssp             CCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHh
Confidence            889999999999999998 87754

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.72  E-value=8.7e-06  Score=61.51  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .|++++|.||+||||||+. +.|..
T Consensus         3 ~g~iI~l~G~~GsGKSTia-~~La~   26 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIA-EALAN   26 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHH-HHHHT
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            5899999999999999999 88865

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=4.7e-06  Score=71.78  Aligned_cols=51  Identities=12%  Similarity=0.219  Sum_probs=40.3

Q ss_pred             hccCcEEEEcCccC------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeee
Q 026304          106 YAKLDVIGIDEAQF------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKL  168 (240)
Q Consensus       106 ~~~p~lllLDEP~~------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l  168 (240)
                      ..++++++||||.+      +..+.++|.++.. .+.-+|++||++..+           ..||+++.+
T Consensus       352 ~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~~~~-----------~~ad~~~~V  408 (427)
T d1w1wa_         352 YQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKNTMF-----------EKSDALVGV  408 (427)
T ss_dssp             SSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCHHHH-----------TTCSEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHH-----------HhcccEEEE
Confidence            35677999999977      3468888887754 466799999999876           789998765

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.67  E-value=7.3e-05  Score=61.57  Aligned_cols=139  Identities=16%  Similarity=0.105  Sum_probs=69.5

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccc------hhcccCCCeEEEccCceecceecCcchhHHH
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSS------KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ   99 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~------~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~   99 (240)
                      -=++.|.++-|.||.|||||||++.++....-.|..+.++...      ...+++   +=+..-...+..+.++...+..
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~G---vd~d~i~~~~~~~~E~~~~~~~  128 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALG---VNTDELLVSQPDNGEQALEIME  128 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTT---CCGGGCEEECCSSHHHHHHHHH
T ss_pred             CCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhC---CCchhEEEEcCCCHHHHHHHHH
Confidence            4688999999999999999999956555444445444444322      111222   1111111112223333233222


Q ss_pred             hhchhhhccCcEEEEcCccC------------------h----HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchH--
Q 026304          100 KLGDDAYAKLDVIGIDEAQF------------------F----EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV--  155 (240)
Q Consensus       100 ~~~~~l~~~p~lllLDEP~~------------------~----~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~--  155 (240)
                      .+-  .-.+++++++|=-++                  +    ...+..|..+..+.+.+++++.|-.......|+.-  
T Consensus       129 ~l~--~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~~~~vi~tNQv~~~~g~~~g~~~~  206 (268)
T d1xp8a1         129 LLV--RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVMYGNPET  206 (268)
T ss_dssp             HHH--TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-------------
T ss_pred             HHH--hcCCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhcCCeEEEEeEEeeccccccCccee
Confidence            221  023688999996532                  0    12333444445557899999999776664444332  


Q ss_pred             ----HHHHhhccceeeec
Q 026304          156 ----LDIIPLADTVTKLT  169 (240)
Q Consensus       156 ----~~L~~~ad~i~~l~  169 (240)
                          .-|.-+++-++.|+
T Consensus       207 ~~GG~al~~~ss~rl~l~  224 (268)
T d1xp8a1         207 TTGGRALKFYASVRLDVR  224 (268)
T ss_dssp             --CHHHHHHHCSEEEEEE
T ss_pred             ecccchhhhceeEEEEEE
Confidence                23344555555554

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.65  E-value=1.3e-05  Score=60.49  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=22.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+|-++.|+|++||||||+. +.|+-
T Consensus         4 ~~g~~I~l~G~~GsGKTTia-~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIA-RALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            57999999999999999999 88864

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=1.5e-05  Score=60.03  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..+.++.|+||+||||||+. +.|+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a-~~La~   28 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVA-SEVAH   28 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            46889999999999999999 88865

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=8.2e-05  Score=61.30  Aligned_cols=140  Identities=19%  Similarity=0.162  Sum_probs=69.2

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccc------hhcccCCCeEEEccCceecceecCcchhHHH
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSS------KDTRYAIDSVVTHDGAKLPCWALPELTSFRQ   99 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~------~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~   99 (240)
                      --++.|.++-|.||+|+|||||++.++....-.|..+..+...      ...+.+..   +..-..+...++++......
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD---~d~il~~~~~~~E~~~~~~~  131 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVD---TDSLLVSQPDTGEQALEIAD  131 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCC---GGGCEEECCSSHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCC---HHHeEEecCCCHHHHHHHHH
Confidence            4689999999999999999999856665444444444443221      11111110   11111112223333333322


Q ss_pred             hhchhhhccCcEEEEcCccC------------------h-H---HHHHHHHHHHhcCCCEEEEEecChhhhhcccchH--
Q 026304          100 KLGDDAYAKLDVIGIDEAQF------------------F-E---DLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSV--  155 (240)
Q Consensus       100 ~~~~~l~~~p~lllLDEP~~------------------~-~---~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~--  155 (240)
                      .+-  .-.+++++++|=-.+                  + .   ..+..+..+..+.+.+++++.|-.+.....|+.-  
T Consensus       132 ~l~--~~~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~~~~vi~~NQv~~~~~~~~g~~~~  209 (269)
T d1mo6a1         132 MLI--RSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGVMFGSPET  209 (269)
T ss_dssp             HHH--HTTCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred             HHH--hcCCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhcCchhhhhheeeccCccccCCcee
Confidence            221  124688999996633                  0 1   2233333344446889999988666555445332  


Q ss_pred             ----HHHHhhccceeeecc
Q 026304          156 ----LDIIPLADTVTKLTA  170 (240)
Q Consensus       156 ----~~L~~~ad~i~~l~~  170 (240)
                          ..|.-+++-++.|..
T Consensus       210 ~~GG~al~~~ss~rl~l~k  228 (269)
T d1mo6a1         210 TTGGKALKFYASVRMDVRR  228 (269)
T ss_dssp             CTTHHHHHHHCSEEEEEEE
T ss_pred             cccccceeeeeeEEEEEEe
Confidence                334556666666654

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=4.3e-05  Score=62.18  Aligned_cols=65  Identities=8%  Similarity=-0.027  Sum_probs=40.6

Q ss_pred             hccCcEEEEcCccC-----------hHHHHHHHHHHHhcCCCEEEEEecChhhhh--------cccchHHHHHhhcccee
Q 026304          106 YAKLDVIGIDEAQF-----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLR--------RSFGSVLDIIPLADTVT  166 (240)
Q Consensus       106 ~~~p~lllLDEP~~-----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~--------~~f~~~~~L~~~ad~i~  166 (240)
                      ..+|+++++|--+.           ..+++..|+.++...+++|+++.|--....        ...-++..|...||.++
T Consensus       130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v~  209 (274)
T d1nlfa_         130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQS  209 (274)
T ss_dssp             HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CTGGGCSCEE
T ss_pred             ccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhccccccccCCcccccccccHHHHHhhccEEE
Confidence            46899999996532           235777777777767999999998432110        11224445677888888


Q ss_pred             eecc
Q 026304          167 KLTA  170 (240)
Q Consensus       167 ~l~~  170 (240)
                      .|..
T Consensus       210 ~l~r  213 (274)
T d1nlfa_         210 YLSS  213 (274)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8865

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=9.1e-05  Score=60.53  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..-+.+.||.|+|||++. +.|+.
T Consensus        45 ~~~iLL~GppGtGKT~la-~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLA-KAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CCeEEeeCCCCCCccHHH-HHHHH
Confidence            345789999999999999 99985

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=6.3e-05  Score=59.80  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=31.9

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK   66 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~   66 (240)
                      ++++-..-.+++++||+|+||||.+.|+...+...|+++....
T Consensus         2 l~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   44 (211)
T d2qy9a2           2 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA   44 (211)
T ss_dssp             CCCCSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            3444444579999999999999998777665566677776654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=0.00024  Score=57.83  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=55.9

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhch
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGD  103 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~  103 (240)
                      .....++|  +.+.||.|+|||+++ +.++..  .+.++...........            +...+.   ..+...+..
T Consensus        33 ~g~~~~~g--iLL~GppGtGKT~l~-~ala~~--~~~~~~~i~~~~l~~~------------~~g~~~---~~l~~~f~~   92 (258)
T d1e32a2          33 IGVKPPRG--ILLYGPPGTGKTLIA-RAVANE--TGAFFFLINGPEIMSK------------LAGESE---SNLRKAFEE   92 (258)
T ss_dssp             CCCCCCCE--EEEECCTTSSHHHHH-HHHHHH--TTCEEEEECHHHHTTS------------CTTHHH---HHHHHHHHH
T ss_pred             CCCCCCce--eEEecCCCCCchHHH-HHHHHH--hCCeEEEEEchhhccc------------ccccHH---HHHHHHHHH
Confidence            33444555  789999999999999 988752  3444444332211100            000000   111112222


Q ss_pred             hhhccCcEEEEcCccC------------hHHHHHHHHHH----HhcCCCEEEEEecChhhh
Q 026304          104 DAYAKLDVIGIDEAQF------------FEDLYEFCCNA----ADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       104 ~l~~~p~lllLDEP~~------------~~~i~~~l~~l----~~~~g~tvi~vtHd~~~~  148 (240)
                      .....|-+|++||-..            ...+...+...    ....++.||.+|.+++.+
T Consensus        93 A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~l  153 (258)
T d1e32a2          93 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI  153 (258)
T ss_dssp             HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGS
T ss_pred             HHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCcccc
Confidence            2356899999999844            11222222222    222456778899887665

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.44  E-value=3e-05  Score=58.18  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..++.|.|++||||||+. +.|..
T Consensus         3 ~kiI~l~G~~GsGKsTva-~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIV-RCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHH-HHHHH
T ss_pred             CeEEEEECCCCCCHHHHH-HHHHH
Confidence            568999999999999999 88875

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.44  E-value=6e-05  Score=60.05  Aligned_cols=43  Identities=16%  Similarity=0.130  Sum_probs=31.9

Q ss_pred             CCCcccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec
Q 026304           24 GLPHRNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK   66 (240)
Q Consensus        24 vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~   66 (240)
                      +++.-.+..+++++||+|+||||.+.|+...+...|+++....
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit   46 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA   46 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence            3444456678999999999999998677766666777766553

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.43  E-value=3.1e-05  Score=58.26  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=22.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|-.++|+||+||||||+. +.|+-
T Consensus         3 pk~~~I~i~G~~GsGKTT~~-~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMA-EMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHH-HHHHH
Confidence            56778999999999999999 88864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.43  E-value=3.2e-05  Score=58.29  Aligned_cols=22  Identities=18%  Similarity=0.380  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..++|+||.|||||||. +.|+.
T Consensus         8 K~I~i~G~~GsGKTTla-~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLV-NKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            57899999999999999 88864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.42  E-value=3.8e-05  Score=56.67  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=18.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +++.|.||+||||||+. +.|.
T Consensus         3 klIii~G~pGsGKTTla-~~L~   23 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWA-REFI   23 (152)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHH
Confidence            57899999999999999 7663

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=3.4e-05  Score=58.13  Aligned_cols=29  Identities=24%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc-hhCCceE
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE-SDNGRNI   62 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i   62 (240)
                      .+.|+||+|+|||||+ +.+... .-.|..+
T Consensus         3 ~v~ItG~~GtGKTtl~-~~i~~~l~~~~~~v   32 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLI-HKASEVLKSSGVPV   32 (189)
T ss_dssp             CEEEESCCSSCHHHHH-HHHHHHHHHTTCCC
T ss_pred             EEEEECCCCCcHHHHH-HHHHHHHHHCCCEE
Confidence            5889999999999999 777664 3344433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.4e-05  Score=60.07  Aligned_cols=24  Identities=29%  Similarity=0.202  Sum_probs=21.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|-++.|+|++||||||+. +.|+-
T Consensus        18 ~g~vI~L~G~pGSGKTTiA-k~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVS-MALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHHH
Confidence            6889999999999999999 88865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=3.9e-05  Score=60.66  Aligned_cols=23  Identities=22%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +|.++.|+||+|||||||. +.|.
T Consensus         1 ~G~livi~GPSG~GK~tl~-~~L~   23 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLI-QALL   23 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHH-HHHH
T ss_pred             CCeEEEEECCCCCCHHHHH-HHHH
Confidence            5889999999999999999 7664

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.38  E-value=5.3e-05  Score=60.09  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=28.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK   66 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~   66 (240)
                      ++.+++++||+|+||||.+.|+..-+...|+++....
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit   41 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA   41 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            5679999999999999998676554455677776553

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=4.2e-05  Score=56.38  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|+||+||||||+. +.|+-
T Consensus         4 ~I~l~G~~GsGKSTva-k~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIG-RQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            4788899999999999 88864

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.34  E-value=5e-05  Score=56.63  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++.|.||+||||||+. +.|+.
T Consensus         3 klI~i~G~~GsGKTTva-~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTC-KRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCCHHHHH-HHHHH
Confidence            57899999999999998 88864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.32  E-value=4.8e-05  Score=58.22  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++||.||+|||||||. +.|.-
T Consensus        24 iIgI~G~~GSGKSTla-~~L~~   44 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLA-NQLSQ   44 (198)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            7899999999999999 87754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00015  Score=59.38  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcc-hhHHHhhchhhh
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPEL-TSFRQKLGDDAY  106 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~-~~~~~~~~~~l~  106 (240)
                      ++...-+.|.||.|+|||+|. +.+++..  |.++...+......                ....+. ..+...+.....
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~-~ala~~~--~~~~~~~~~~~l~~----------------~~~~~~~~~l~~~f~~A~~   98 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLA-KAIANEC--QANFISIKGPELLT----------------MWFGESEANVREIFDKARQ   98 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHH-HHHHHHT--TCEEEEECHHHHHT----------------SCTTTHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCcchhHH-HHHHHHh--CCcEEEEEHHHhhh----------------ccccchHHHHHHHHHHHHh
Confidence            334445889999999999999 9998632  44443332211100                000111 111112222335


Q ss_pred             ccCcEEEEcCccC---------------hHHHHHH-HH---HHHhcCCCEEEEEecChhhh
Q 026304          107 AKLDVIGIDEAQF---------------FEDLYEF-CC---NAADHDGKTVVVAGLDGDYL  148 (240)
Q Consensus       107 ~~p~lllLDEP~~---------------~~~i~~~-l~---~l~~~~g~tvi~vtHd~~~~  148 (240)
                      ..|-+|++||-..               ..++... +.   .+....+..||.+|++++.+
T Consensus        99 ~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~l  159 (265)
T d1r7ra3          99 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII  159 (265)
T ss_dssp             TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTT
T ss_pred             cCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhC
Confidence            7899999999832               0122222 22   22233567888999988655

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.29  E-value=5.5e-05  Score=57.14  Aligned_cols=22  Identities=23%  Similarity=0.206  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|.|+.||||||++ +.|..
T Consensus         2 kiI~i~G~~GsGKsT~~-~~L~~   23 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSS-QLAMD   23 (190)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHH
T ss_pred             CEEEEECCCCCCHHHHH-HHHHH
Confidence            58999999999999999 87754

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.29  E-value=0.00028  Score=55.83  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=54.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCch-hCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhchhhhccCcEE
Q 026304           34 HVIMGPMFAGKTTALLRRIRSES-DNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLGDDAYAKLDVI  112 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl~-~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ll  112 (240)
                      +.|.||.|+|||-|+ +.++... -.+..+...+.......           ....+.-.....+.     ..+...++|
T Consensus        39 l~l~G~~G~GKTHLl-~A~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~-----~~~~~~dll  101 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLL-QAAGNEAKKRGYRVIYSSADDFAQA-----------MVEHLKKGTINEFR-----NMYKSVDLL  101 (213)
T ss_dssp             EEEECSSSSSHHHHH-HHHHHHHHHTTCCEEEEEHHHHHHH-----------HHHHHHHTCHHHHH-----HHHHTCSEE
T ss_pred             EEEECCCCCcHHHHH-HHHHHHhccCccceEEechHHHHHH-----------HHHHHHccchhhHH-----HHHhhccch
Confidence            689999999999999 8886532 12222222211100000           00000000111111     135689999


Q ss_pred             EEcCccC-------hHHHHHHHHHHHhcCCCEEEEEecChh
Q 026304          113 GIDEAQF-------FEDLYEFCCNAADHDGKTVVVAGLDGD  146 (240)
Q Consensus       113 lLDEP~~-------~~~i~~~l~~l~~~~g~tvi~vtHd~~  146 (240)
                      ++|+-..       ...+..++....+ .|+.+|+++....
T Consensus       102 ~iDDi~~i~~~~~~~~~lf~lin~~~~-~~~~iiits~~~p  141 (213)
T d1l8qa2         102 LLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHP  141 (213)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCG
T ss_pred             hhhhhhhhcCchHHHHHHHHHHHHHhh-ccceEEEecCCcc
Confidence            9999865       3458888888876 6888888777543

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.28  E-value=7.3e-05  Score=59.28  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchhCCceEEe
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESDNGRNIAM   64 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~   64 (240)
                      +++|+||.|||||||+ +.|....-.++.+..
T Consensus         2 vi~v~G~~GsGKTTLl-~~ll~~~~~~~~~~i   32 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLT-GEFGRYLEDNYKVAY   32 (244)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHHHTTTSCEEE
T ss_pred             EEEEEcCCCCcHHHHH-HHHHHHHhhCCeEEE
Confidence            6899999999999999 777654334444443

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.27  E-value=5.5e-05  Score=56.57  Aligned_cols=20  Identities=30%  Similarity=0.296  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+||+||||||+. +.|+-
T Consensus         7 I~i~G~pGsGKTTia-~~La~   26 (173)
T d1rkba_           7 ILLTGTPGVGKTTLG-KELAS   26 (173)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            679999999999999 88853

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=6.6e-05  Score=57.66  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=24.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -+++|+++.|.||+|||||||+++++..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4899999999999999999999555543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00024  Score=56.64  Aligned_cols=20  Identities=25%  Similarity=0.313  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.|.||.|+||||+. +.++.
T Consensus        36 lll~Gp~G~GKTt~~-~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRC-MALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHH-HTHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            789999999999999 87765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=6.6e-05  Score=60.22  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.9

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +|+.++++|++|+|||||+ +.|.+-
T Consensus        94 ~~kt~~~~G~SGVGKSTLi-N~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLL-NAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHH-HHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHH-Hhhcch
Confidence            6899999999999999999 999773

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.00014  Score=59.08  Aligned_cols=21  Identities=29%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -+.+.||.|+|||+|. +.++.
T Consensus        44 giLl~GppGtGKT~la-~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLA-RAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEecCCCCChhHHH-HHHHH
Confidence            3789999999999999 99985

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.22  E-value=0.00013  Score=57.82  Aligned_cols=38  Identities=18%  Similarity=0.239  Sum_probs=29.1

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK   66 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~   66 (240)
                      +...++.++||+|+||||.+.|+...+...|+++....
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit   45 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA   45 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            35678999999999999998677666666677766543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00068  Score=50.84  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.|.|.
T Consensus         2 ~V~liG~~n~GKSsLi-~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLF-NKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHC-
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            4899999999999999 988874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.16  E-value=0.00017  Score=57.26  Aligned_cols=38  Identities=13%  Similarity=0.135  Sum_probs=25.5

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeec
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIK   66 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~   66 (240)
                      +...+++++||+|+||||.+.|+...+...|+++....
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   47 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG   47 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence            45678999999999999998677765666677766553

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00024  Score=60.61  Aligned_cols=27  Identities=22%  Similarity=0.304  Sum_probs=22.1

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHH
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .+++..+.+++|+|||||||||+| .+|
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~il-eAi   45 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMM-DAI   45 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHH-HHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHH-HHH
Confidence            344555569999999999999999 776

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.12  E-value=8.4e-05  Score=57.41  Aligned_cols=22  Identities=14%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|||||||+ +.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLi-n~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFI-NSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHTC
T ss_pred             EEEEECCCCCCHHHHH-HHhcCC
Confidence            4999999999999999 999874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.12  E-value=0.00013  Score=56.31  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +..+++|+||.||||||+. +.|+-
T Consensus         5 kp~iI~i~G~pGSGKsT~a-~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQC-ANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CCcEEEEECCCCCCHHHHH-HHHHH
Confidence            4578999999999999998 87764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00013  Score=56.29  Aligned_cols=20  Identities=40%  Similarity=0.579  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+||+|||||||+ +.|..
T Consensus         4 Ivl~GpsG~GK~tl~-~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLL-KKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            789999999999999 77643

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00014  Score=56.98  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++||.|+.||||||+. +.|.-
T Consensus         4 iIgI~G~~gSGKSTla-~~L~~   24 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVC-AKIVQ   24 (213)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999998 87753

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.04  E-value=0.00019  Score=55.43  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.7

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++-.+++|+||.||||||+. +.|+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a-~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQC-EKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            45678999999999999999 88864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.00  E-value=0.00014  Score=56.30  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.8

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +..+.++.|+||.||||||+. +.|+-
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a-~~La~   30 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQC-EKIVQ   30 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHH-HHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHH-HHHHH
Confidence            567889999999999999999 87754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00017  Score=55.50  Aligned_cols=21  Identities=14%  Similarity=0.233  Sum_probs=18.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ..+.|+||+|||||||+ +.|.
T Consensus         4 k~ivl~Gpsg~GK~tl~-~~L~   24 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIK-NTLI   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHH
T ss_pred             CcEEEECCCCCCHHHHH-HHHH
Confidence            57899999999999999 7665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=7.2e-05  Score=60.24  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=22.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +|..++++|++|+|||||+ +.|.+-
T Consensus        96 ~~~~~vl~G~SGVGKSSLi-N~L~~~  120 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLL-NAISPE  120 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHH-HHHCC-
T ss_pred             ccceEEEECCCCccHHHHH-HhhccH
Confidence            6788999999999999999 999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00017  Score=55.89  Aligned_cols=20  Identities=40%  Similarity=0.577  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+||+|||||||+ +.|..
T Consensus         3 Ivl~GPsGsGK~tl~-~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLL-KKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            679999999999998 77643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.0004  Score=54.63  Aligned_cols=21  Identities=29%  Similarity=0.447  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.+.||.|+||||++ ++++..
T Consensus        38 lLl~Gp~G~GKttl~-~~la~~   58 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTI-VALARE   58 (227)
T ss_dssp             EEEECSSSSSHHHHH-HHHHHH
T ss_pred             EEEECCCCCChhHHH-HHHHHH
Confidence            679999999999999 988763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00027  Score=53.96  Aligned_cols=27  Identities=26%  Similarity=0.154  Sum_probs=22.2

Q ss_pred             CcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           26 PHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        26 l~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      +.-+.-+++.++|++||||||+. +.+.
T Consensus         9 ~~~~~p~liil~G~pGsGKST~a-~~l~   35 (172)
T d1yj5a2           9 LLSPNPEVVVAVGFPGAGKSTFI-QEHL   35 (172)
T ss_dssp             SSCSSCCEEEEECCTTSSHHHHH-HHHT
T ss_pred             cCCCCCEEEEEECCCCCCHHHHH-HHHH
Confidence            34456689999999999999999 7663

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.93  E-value=0.00023  Score=56.51  Aligned_cols=28  Identities=18%  Similarity=0.111  Sum_probs=24.3

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      =+++|+++.|.||.|||||||.++.+..
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3899999999999999999998666643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.91  E-value=0.00023  Score=53.76  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=23.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEE
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIA   63 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~   63 (240)
                      .++.|.|++||||||+. +.|... ...|..+.
T Consensus         2 kiivi~G~~GsGKTT~~-~~La~~L~~~~~~~~   33 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVL-AKVKEILDNQGINNK   33 (194)
T ss_dssp             EEEEEEECTTSCHHHHH-HHHHHHHHTTTCCEE
T ss_pred             eEEEEECCCCCCHHHHH-HHHHHHHHHcCCCEE
Confidence            47789999999999999 888753 33444443

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.91  E-value=0.0002  Score=53.82  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+|++||||||+. +.|+.
T Consensus         3 I~liG~~GsGKsTi~-k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLA-RALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            678899999999999 88864

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.90  E-value=0.00021  Score=54.07  Aligned_cols=21  Identities=24%  Similarity=0.207  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|+|++||||||+. +.++-
T Consensus         4 ~Iil~G~~GsGKSTia-~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVG-RELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHH-HHHHH
T ss_pred             CEEEECCCCCCHHHHH-HHHHH
Confidence            4678999999999999 88863

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.90  E-value=0.00025  Score=55.76  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=27.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCchhCC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSESDNG   59 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g   59 (240)
                      -+++|+++.|.|+.|+|||||++++++.....+
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~   62 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPE   62 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGG
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence            389999999999999999999967766553333

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.86  E-value=0.00021  Score=56.17  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=24.1

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      =+++|+++.|.||.|||||||.+.++..
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4899999999999999999999555543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.86  E-value=0.00027  Score=54.25  Aligned_cols=24  Identities=33%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      |+|=.+.|+||.||||||.. +.|+
T Consensus         1 p~~~riil~G~pGSGKsT~a-~~La   24 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQA-PKLA   24 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHH-HHHH
T ss_pred             CCccEEEEECCCCCCHHHHH-HHHH
Confidence            46777889999999999999 8887

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00023  Score=53.89  Aligned_cols=27  Identities=30%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..++|.++++-|+-|||||||. |.+..
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfv-r~~~~   55 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLT-RGMLQ   55 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             cCCCCeEEEEecCCCccHHHHH-HHHHh
Confidence            3478999999999999999999 77754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.00026  Score=53.26  Aligned_cols=20  Identities=35%  Similarity=0.419  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.|+|++||||||+. +.++.
T Consensus         4 IvliG~~G~GKSTig-~~La~   23 (165)
T d2iyva1           4 AVLVGLPGSGKSTIG-RRLAK   23 (165)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            567799999999998 88864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00029  Score=54.11  Aligned_cols=21  Identities=33%  Similarity=0.362  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|+||.||||||.. +.|+-
T Consensus         3 iI~i~GppGSGKsT~a-~~La~   23 (194)
T d1teva_           3 VVFVLGGPGAGKGTQC-ARIVE   23 (194)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            6899999999999999 88864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.001  Score=52.02  Aligned_cols=42  Identities=10%  Similarity=0.111  Sum_probs=27.2

Q ss_pred             ccCcEEEEcCccCh-HHHHHHHHHHHhc--CCCEEEEEecChhhh
Q 026304          107 AKLDVIGIDEAQFF-EDLYEFCCNAADH--DGKTVVVAGLDGDYL  148 (240)
Q Consensus       107 ~~p~lllLDEP~~~-~~i~~~l~~l~~~--~g~tvi~vtHd~~~~  148 (240)
                      .+.+++++||.... ......|.+..++  .+..+|++|++++-+
T Consensus       107 ~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~l  151 (207)
T d1a5ta2         107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERL  151 (207)
T ss_dssp             SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGS
T ss_pred             CccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhh
Confidence            46789999999662 2334444444443  245678889988755

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.81  E-value=0.00023  Score=53.46  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=20.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      --.++|+|+.|+|||||+ +.+.+-
T Consensus        13 ~~kI~lvG~~~vGKTsLl-~~l~~~   36 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLL-HMLKDD   36 (186)
T ss_dssp             CEEEEEEEETTSSHHHHH-HHHSCC
T ss_pred             CCEEEEECCCCCCHHHHH-HHHhCC
Confidence            346889999999999999 877663

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.80  E-value=0.00023  Score=54.67  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|+||.||||||+. +.|+-
T Consensus         5 ~I~i~GppGsGKsT~a-~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQC-ELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4779999999999999 87753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.0023  Score=55.20  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      -++|+|..|+|||||+ +.|.|..
T Consensus        58 ~Iai~G~~n~GKSSLi-NaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFI-NTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHTCC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCCC
Confidence            4899999999999999 9999853

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00031  Score=53.90  Aligned_cols=20  Identities=35%  Similarity=0.391  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++||.|+.||||||+. +.+.
T Consensus         5 IIgitG~~gSGKstva-~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVA-ALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            7899999999999998 8874

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.76  E-value=0.00024  Score=54.16  Aligned_cols=21  Identities=29%  Similarity=0.260  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|+.++|||||+ +.|.|.
T Consensus         4 VaiiG~~nvGKSSLi-n~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLL-SVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHH-HHSEEE
T ss_pred             EEEECCCCCCHHHHH-HHHhCC
Confidence            799999999999999 998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00049  Score=54.40  Aligned_cols=27  Identities=22%  Similarity=0.065  Sum_probs=23.8

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      =+++|+++.|.||+|||||||.+.++.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999999855554

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.72  E-value=0.0003  Score=51.52  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|++|+|||||+ +.+.+
T Consensus         2 KI~liG~~nvGKSSLl-n~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLL-HMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            4679999999999999 76665

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.72  E-value=0.00037  Score=52.70  Aligned_cols=20  Identities=40%  Similarity=0.396  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.|+||.||||||+. +.|+-
T Consensus         3 I~i~G~pGSGKsT~a-~~La~   22 (182)
T d1zina1           3 LVLMGLPGAGKGTQA-EKIVA   22 (182)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHHH
Confidence            679999999999999 88854

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.70  E-value=0.00034  Score=52.96  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -++|+|+.|+|||||+ +.|.|-
T Consensus         2 ~I~lvG~~nvGKSsLi-n~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLI-YRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHH-HHHHSC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            3789999999999999 999874

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.65  E-value=0.00036  Score=51.16  Aligned_cols=21  Identities=33%  Similarity=0.423  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|+.|+|||||+ +.+.+-
T Consensus         3 ivlvG~~~vGKSsLi-~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTIL-YKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHhcC
Confidence            679999999999999 777653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.00049  Score=52.11  Aligned_cols=22  Identities=27%  Similarity=0.329  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++|+|+.|+|||||+ +.+.|.
T Consensus         7 ~I~lvG~~~~GKSSLi-n~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLL-NNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            7999999999999999 988874

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.00047  Score=53.09  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=25.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEeec
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAMIK   66 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~~~   66 (240)
                      -++.++|.+||||||+. +.|+.. ...|.++..+.
T Consensus         3 ~li~l~GlpgsGKSTla-~~L~~~l~~~~~~~~~~~   37 (213)
T d1bifa1           3 TLIVMVGLPARGKTYIS-KKLTRYLNFIGVPTREFN   37 (213)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHH-HHHHHHHHhcCCCCeEEc
Confidence            36899999999999999 888753 34555555443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.63  E-value=0.00047  Score=52.47  Aligned_cols=21  Identities=43%  Similarity=0.335  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|+||.||||||+. +.|+-
T Consensus         2 ~I~i~G~pGSGKsT~a-~~La~   22 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQA-DRIVE   22 (182)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            4789999999999998 87764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.62  E-value=0.00046  Score=55.27  Aligned_cols=27  Identities=26%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ......+.+.||.|+|||||. +.|++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la-~~la~~   55 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLR-SAIFEE   55 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHH-HHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHH-HHHHHH
Confidence            344456899999999999999 998873

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00052  Score=51.63  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++|+|..|+|||||+ +.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLi-n~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLL-NKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHH-HHHHTC
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            5899999999999999 999874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00052  Score=53.32  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|.||.||||||+. +.|+.
T Consensus         5 iI~I~GppGSGKgT~a-k~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLC-KAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            8999999999999999 87764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.57  E-value=0.00052  Score=53.58  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +++|-||.||||||.. +.|+-
T Consensus         5 ~IaIdGp~GsGKgT~a-k~La~   25 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVA-KIIAK   25 (223)
T ss_dssp             EEEEECSSCSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            5788899999999999 88864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.56  E-value=0.00045  Score=50.95  Aligned_cols=21  Identities=43%  Similarity=0.425  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         7 kI~ivG~~~vGKSSLi-~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTIL-YRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHhC
Confidence            3889999999999999 77755

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.00057  Score=51.88  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+||.||||||+. +.|+-
T Consensus         2 ~I~i~G~pGsGKsT~a-~~La~   22 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQA-VKLAE   22 (181)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            3689999999999998 88764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.56  E-value=0.0004  Score=52.66  Aligned_cols=21  Identities=24%  Similarity=0.256  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|+.|+|||||+ +.|.|.
T Consensus         4 VaivG~~nvGKSTLi-n~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLL-AAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHH-HHHCSS
T ss_pred             EEEECCCCCCHHHHH-HHHhCC
Confidence            799999999999999 999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00048  Score=53.09  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|||||||+ +.|.+-
T Consensus         5 ~V~lvG~~n~GKTSLl-n~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLL-TLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHhCC
Confidence            6899999999999999 888764

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.55  E-value=0.00057  Score=53.32  Aligned_cols=20  Identities=30%  Similarity=0.268  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++||+|+.||||||.. +.+.
T Consensus         4 iIgITG~igSGKStv~-~~l~   23 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIA-NLFT   23 (205)
T ss_dssp             EEEEECSTTSCHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            7899999999999999 8885

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00073  Score=56.93  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=25.9

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEe
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAM   64 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~   64 (240)
                      ...-++||+||.|||||||+ ..+... .-.|..+..
T Consensus        52 ~~~~~IgitG~pGaGKSTLi-~~l~~~~~~~g~~vav   87 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFL-EAFGMLLIREGLKVAV   87 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHH-HHHHHHHHHTTCCEEE
T ss_pred             CCceEEEeeCCCCCCHHHHH-HHHHHHHHhcCCceee
Confidence            45678999999999999999 666543 445665543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.00055  Score=51.95  Aligned_cols=23  Identities=26%  Similarity=0.254  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++|+|+.|+|||||+ +.|.|.
T Consensus         9 ~kV~iiG~~~~GKSTLi-n~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLF-NAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHH-HHHHTS
T ss_pred             CEEEEECCCCCCHHHHH-HHHHCC
Confidence            35899999999999999 988874

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.00057  Score=51.77  Aligned_cols=21  Identities=29%  Similarity=0.346  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|+||.||||||.. +.|+-
T Consensus         2 ~I~i~G~pGSGKsT~~-~~La~   22 (179)
T d1e4va1           2 RIILLGAPVAGKGTQA-QFIME   22 (179)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            3678999999999998 88853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.53  E-value=0.00072  Score=53.15  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+|-++-+.|.+||||||+. +.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia-~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLA-VELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHH-HHHHH
Confidence            58999999999999999999 87754

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00059  Score=53.17  Aligned_cols=24  Identities=38%  Similarity=0.252  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.+++|-|+-||||||++ +.|..
T Consensus         1 rgkfIviEG~dGsGKsT~~-~~L~~   24 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTAR-NVVVE   24 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHH-HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHH
Confidence            5889999999999999999 87765

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.50  E-value=0.00065  Score=50.56  Aligned_cols=22  Identities=36%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|+.|+|||||+ +.+.+-
T Consensus         4 ki~ivG~~~~GKTsLi-~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTIL-KKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHH-HHHTTC
T ss_pred             EEEEECCCCCCHHHHH-HHHcCC
Confidence            4789999999999999 888764

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00077  Score=49.78  Aligned_cols=23  Identities=30%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++++|+.|+|||||+ +.|.|.
T Consensus         2 ~kI~lvG~~nvGKSsLi-n~l~~~   24 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLL-NALAGR   24 (161)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHHTS
T ss_pred             CEEEEECCCCCCHHHHH-HHHhCC
Confidence            35889999999999999 999874

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.003  Score=46.67  Aligned_cols=20  Identities=30%  Similarity=0.418  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|..|+|||||+ +.+.+
T Consensus         3 v~vvG~~~vGKTsLi-~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLI-TRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 65543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.43  E-value=0.00071  Score=51.86  Aligned_cols=25  Identities=28%  Similarity=0.262  Sum_probs=21.6

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.-+++|-|+.||||||++ +.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~-~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYL-NHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHH-HTTGG
T ss_pred             CCceEEEEECCCCCCHHHHH-HHHHH
Confidence            34568999999999999999 98875

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.00079  Score=51.14  Aligned_cols=21  Identities=33%  Similarity=0.441  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.|+||.||||||+. +.|+-
T Consensus         4 rIvl~G~pGSGKtT~a-~~La~   24 (180)
T d1akya1           4 RMVLIGPPGAGKGTQA-PNLQE   24 (180)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHH
Confidence            3668899999999999 88864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00076  Score=52.95  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=25.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc-hhCCceEE
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE-SDNGRNIA   63 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~   63 (240)
                      .+|-+++|-|+-||||||+. +.|... .-.|.++.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~-~~L~~~L~~~g~~v~   35 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQS-RKLVEALCAAGHRAE   35 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHH-HHHHHHHHHTTCCEE
T ss_pred             CCeeEEEEECCCCCCHHHHH-HHHHHHHHHCCCcEE
Confidence            46889999999999999998 877652 33454443

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.00051  Score=51.65  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .=.++|+|+.++|||||+ +.|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~-n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSAL-NTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHH-TTTCCC
T ss_pred             CCEEEEECCCCCCHHHHH-HHHhCC
Confidence            346999999999999999 988774

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00069  Score=53.37  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++.+++|-|+-||||||++ +.|..
T Consensus         1 ~~k~I~ieG~dGsGKST~~-~~L~~   24 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFV-NILKQ   24 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHH-TTTGG
T ss_pred             CCCEEEEECCCCCCHHHHH-HHHHH
Confidence            4689999999999999999 88876

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.32  E-value=0.016  Score=40.66  Aligned_cols=25  Identities=32%  Similarity=0.218  Sum_probs=20.1

Q ss_pred             ccCcEEEEEEcCCCCcHHHHHHHHH
Q 026304           28 RNSGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      +++|+.+.|.+|.|||||+.++..+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~   28 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQI   28 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHH
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHH
Confidence            5789999999999999996552343

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00097  Score=52.08  Aligned_cols=20  Identities=25%  Similarity=0.343  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++||+|+.||||||.. +++.
T Consensus         5 iIgitG~igSGKStv~-~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVA-NAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHH-HHHH
T ss_pred             EEEEECCCcCCHHHHH-HHHH
Confidence            7899999999999999 8875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.31  E-value=0.00097  Score=51.37  Aligned_cols=21  Identities=38%  Similarity=0.369  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+||.||||||+. +.|+-
T Consensus         8 rIiliG~PGSGKtT~a-~~La~   28 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVS-SRITK   28 (189)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            5778999999999999 87764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.30  E-value=0.0013  Score=55.30  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=26.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC-chhCCceEEee
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS-ESDNGRNIAMI   65 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g-l~~~g~~i~~~   65 (240)
                      ...-+++|.||-|||||||+ ..+.. +.-.|.++..+
T Consensus        49 ~~~~~igitG~pGaGKSTli-~~l~~~~~~~g~~vaVi   85 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTI-DALGSLLTAAGHKVAVL   85 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEE
T ss_pred             CCceEEeeeCCCCCCHHHHH-HHHHHHHhhcCCceeee
Confidence            34568999999999999999 55543 34467666544

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.30  E-value=0.00091  Score=50.03  Aligned_cols=23  Identities=35%  Similarity=0.343  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =.++|+|..|||||||+ +.+.+-
T Consensus        16 ~kI~vvG~~~~GKSsLi-~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTIL-YQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHHTT
T ss_pred             EEEEEECCCCCCHHHHH-HHHhcC
Confidence            46889999999999999 777663

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.24  E-value=0.00098  Score=52.47  Aligned_cols=22  Identities=36%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.|.||+|+||||++ ++++..
T Consensus        47 ~lll~Gp~G~GKTtla-~~iak~   68 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAA-LALARE   68 (231)
T ss_dssp             EEEEESCTTSSHHHHH-HHHHHH
T ss_pred             eEEEECCCCCcHHHHH-HHHHHH
Confidence            4789999999999999 988763

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0016  Score=51.77  Aligned_cols=42  Identities=17%  Similarity=0.265  Sum_probs=26.1

Q ss_pred             ccCcEEEEcCccCh-HHHHHHHHHHHhc--CCCEEEEEecChhhh
Q 026304          107 AKLDVIGIDEAQFF-EDLYEFCCNAADH--DGKTVVVAGLDGDYL  148 (240)
Q Consensus       107 ~~p~lllLDEP~~~-~~i~~~l~~l~~~--~g~tvi~vtHd~~~~  148 (240)
                      .+.+++++||...+ .+..+.|.+..++  .+..+|++|++.+-+
T Consensus       114 ~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i  158 (239)
T d1njfa_         114 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL  158 (239)
T ss_dssp             SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             CCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence            35679999999663 2223333343332  356888999887655

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.00093  Score=51.69  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -++|+|+.|+|||||+ +.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl-~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLF-VRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            4899999999999999 77755

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.20  E-value=0.022  Score=40.55  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=23.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeecc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKS   67 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~   67 (240)
                      .-+...|.+|-|||||+.+...+   ...|..+....+
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~---~~~~~~vli~~P   41 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNP   41 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH---HTTTCCEEEEES
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH---HHcCCcEEEEcC
Confidence            45677889999999999883333   233444544443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0053  Score=45.47  Aligned_cols=21  Identities=19%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         5 Ki~viG~~~vGKTsli-~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALT-IQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            3789999999999999 65544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0011  Score=52.01  Aligned_cols=24  Identities=29%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +|.+++|-|+-||||||+. +.|.-
T Consensus         2 kGk~I~iEG~DGsGKST~~-~~L~~   25 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQC-NILYK   25 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHH-HHHHH
T ss_pred             CeEEEEEECCCCCcHHHHH-HHHHH
Confidence            6999999999999999998 88764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.16  E-value=0.001  Score=49.53  Aligned_cols=21  Identities=33%  Similarity=0.437  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+ +.+.+
T Consensus         4 ki~i~G~~~~GKTsLl-~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFV-NVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHHc
Confidence            3679999999999999 76654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0012  Score=55.10  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      =++||.|++||||||+. +.|..+
T Consensus        81 ~iIGIaG~sgSGKSTla-~~L~~l  103 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTA-RVLQAL  103 (308)
T ss_dssp             EEEEEEECTTSSHHHHH-HHHHHH
T ss_pred             EEEEEeCCCCCCCcHHH-HHHHHH
Confidence            39999999999999998 877653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0014  Score=51.97  Aligned_cols=22  Identities=32%  Similarity=0.393  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ..+.|.||+|+||||++ ++++.
T Consensus        53 ~~lll~GPpG~GKTt~a-~~la~   74 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAA-HLVAQ   74 (253)
T ss_dssp             SEEEEECSTTSSHHHHH-HHHHH
T ss_pred             ceEEEECCCCCCHHHHH-HHHHH
Confidence            47899999999999999 99986

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.04  E-value=0.002  Score=49.28  Aligned_cols=23  Identities=26%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .|.-+.|.|++|+||||+.+.++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            47789999999999999984544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0056  Score=47.43  Aligned_cols=101  Identities=10%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCchh--CC--ceEEeeccchhcccCCCeEEEccCceecceecCcchhHHHhhc-hh
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSESD--NG--RNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFRQKLG-DD  104 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl~~--~g--~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~~~~~-~~  104 (240)
                      .+.-+.+.||+|+||||+. +.+.....  ..  -++..+.+              ++.   ...+.+...+...+. ..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a-~~l~~~i~~~~~~h~D~~~i~~--------------~~~---~I~Id~IR~i~~~~~~~~   75 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVS-LELPEYVEKFPPKASDVLEIDP--------------EGE---NIGIDDIRTIKDFLNYSP   75 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHH-HHHHHHHHTSCCCTTTEEEECC--------------SSS---CBCHHHHHHHHHHHTSCC
T ss_pred             CCceEEEECCCCCCHHHHH-HHHHHHHhccccCCCCEEEEeC--------------CcC---CCCHHHHHHHHHHHhhCc
Confidence            4668889999999999999 77765321  00  11111111              000   011222222222211 11


Q ss_pred             hhccCcEEEEcCccChH-HHHHHHHHHHhc--CCCEEEEEecChhhh
Q 026304          105 AYAKLDVIGIDEAQFFE-DLYEFCCNAADH--DGKTVVVAGLDGDYL  148 (240)
Q Consensus       105 l~~~p~lllLDEP~~~~-~i~~~l~~l~~~--~g~tvi~vtHd~~~~  148 (240)
                      ...+.+++++||+..+. .-.+.|.+..++  .++.+|++|++.+.+
T Consensus        76 ~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~l  122 (198)
T d2gnoa2          76 ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYL  122 (198)
T ss_dssp             SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGS
T ss_pred             ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhC
Confidence            23567899999996632 223333333332  357788999988765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0015  Score=51.29  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.|.||+|+||||++ ++++..
T Consensus        36 lll~Gp~G~GKTtl~-~~i~~~   56 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTI-LALTKE   56 (237)
T ss_dssp             EEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEECCCCCChHHHH-HHHHHH
Confidence            789999999999999 888763

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.99  E-value=0.0015  Score=52.87  Aligned_cols=22  Identities=27%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++|+|..|+|||||+ +.|.|-
T Consensus        34 ~I~LvG~tg~GKSSli-N~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTV-NSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHTS
T ss_pred             EEEEECCCCCcHHHHH-HHHhCC
Confidence            6889999999999999 999885

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.99  E-value=0.0016  Score=49.39  Aligned_cols=22  Identities=27%  Similarity=0.193  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -++|+|+.+||||||+ +.|.+.
T Consensus         7 nIaiiG~~naGKSTL~-n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLS-KVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHH-HHHHTT
T ss_pred             EEEEEeCCCCcHHHHH-HHHHHh
Confidence            3899999999999999 988864

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.99  E-value=0.0016  Score=48.67  Aligned_cols=22  Identities=41%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .++++|+.|+|||||+ +.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi-~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLL-KQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHH-HHHCCS
T ss_pred             EEEEECCCCCCHHHHH-HHHhcC
Confidence            5889999999999999 877653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.98  E-value=0.0021  Score=49.29  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=19.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .|.-+.|.|++|+|||||.+.++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHH
Confidence            57889999999999999984544

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.98  E-value=0.014  Score=48.72  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.++||.|+|||.|. +.+++.
T Consensus       125 ~~l~~G~pG~GKT~la-~ala~~  146 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLV-HALGEA  146 (321)
T ss_dssp             EEEEECSSSSCHHHHH-HHHHHH
T ss_pred             eEEEECCCCccHHHHH-HHHHHH
Confidence            5667899999999999 999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.98  E-value=0.0016  Score=51.72  Aligned_cols=23  Identities=17%  Similarity=0.283  Sum_probs=19.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .+.++.|.||.|+|||||+ +.+.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl-~~~~   50 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSII-KIGI   50 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHH-HHHH
T ss_pred             cCCEEEEEcCCCCcHHHHH-HHHH
Confidence            5678999999999999999 6554

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.91  E-value=0.026  Score=45.65  Aligned_cols=124  Identities=14%  Similarity=0.089  Sum_probs=58.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc---Cc------hhCCceEEeeccchhccc-CCC-eEEE--ccCceecceecCcchhHHH
Q 026304           33 IHVIMGPMFAGKTTALLRRIR---SE------SDNGRNIAMIKSSKDTRY-AID-SVVT--HDGAKLPCWALPELTSFRQ   99 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~---gl------~~~g~~i~~~~~~~~~~~-~~~-~~v~--q~~~~~~~~~~~~~~~~~~   99 (240)
                      -++|+|+.|+|||||. ..|.   |.      .-+|..+..+.+....|. ... ++.+  -.+..+.-+...+..+|..
T Consensus         4 Nv~iiGh~~~GKTtL~-e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLT-EALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             EEEEEcCCCCcHHHHH-HHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            4799999999999999 7663   22      112222222222222221 111 1111  1122233333344444433


Q ss_pred             h-hchhhhccCcEEEEcCccC-hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHH
Q 026304          100 K-LGDDAYAKLDVIGIDEAQF-FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDI  158 (240)
Q Consensus       100 ~-~~~~l~~~p~lllLDEP~~-~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L  158 (240)
                      . ..+..+.+.-++++|=..- +.+....++...+ .++..+++--.++...+.+.....+
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~-~~~p~~i~iNk~D~~~~~~~~l~~~  142 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERAWTVAER-LGLPRMVVVTKLDKGGDYYALLEDL  142 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEECGGGCCCHHHHHHHH
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHHHHhhhh-cccccccccccccccccchhhhhhH
Confidence            2 2233466778888884433 2234444444444 5665555555555443444444444

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.91  E-value=0.00095  Score=55.18  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++||.|++||||||+. +.+..
T Consensus         6 IIgIaG~SGSGKTTva-~~l~~   26 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVK-HTFDQ   26 (288)
T ss_dssp             EEEEESCC---CCTHH-HHHHH
T ss_pred             EEEEECCCCCcHHHHH-HHHHH
Confidence            8999999999999998 87754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0045  Score=50.45  Aligned_cols=124  Identities=11%  Similarity=-0.017  Sum_probs=60.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEc-cCceecceecCcchhH-HHhhchhhhccC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTH-DGAKLPCWALPELTSF-RQKLGDDAYAKL  109 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q-~~~~~~~~~~~~~~~~-~~~~~~~l~~~p  109 (240)
                      .-+.|+||.|.|||+++ .-++.....|..    +.... .   ..+..- -..+.......+.+.- ...+-.++...+
T Consensus        40 ~n~lLVG~~GvGKTalv-~~la~ri~~~~v----p~~l~-~---~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~~  110 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIA-EGLAWRIVQGDV----PEVMA-D---CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT  110 (268)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHHHHHHHTCS----CGGGT-T---CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS
T ss_pred             CCcEEECCCCCcHHHHH-HHHHHHHHhCCc----ccccc-c---ceeEEeeechHhccCccchhHHHHHHHHHHHhhccC
Confidence            45779999999999999 766653333321    11100 0   011111 1222222222222221 111122233444


Q ss_pred             -cEEEEcCccC----------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccce
Q 026304          110 -DVIGIDEAQF----------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTV  165 (240)
Q Consensus       110 -~lllLDEP~~----------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i  165 (240)
                       -+|++||...          ...+.++|+-+..+....+|.+|.. ++....|..-..|.+...+|
T Consensus       111 ~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~-eey~~~~e~d~al~rrF~~I  176 (268)
T d1r6bx2         111 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY-QEFSNIFEKDRALARRFQKI  176 (268)
T ss_dssp             CEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECH-HHHHCCCCCTTSSGGGEEEE
T ss_pred             CceEEecchHHHhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCH-HHHHHHHhhcHHHHhhhccc
Confidence             4677999844          1367788877665344666666554 44434444444444444433

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.0018  Score=48.53  Aligned_cols=20  Identities=30%  Similarity=0.438  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+ +.+.+
T Consensus         5 i~~vG~~~vGKSsLi-~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLM-HRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHc
Confidence            789999999999999 66543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.85  E-value=0.0005  Score=50.82  Aligned_cols=21  Identities=43%  Similarity=0.556  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|+.|+|||||+ +.|.|.
T Consensus         3 I~liG~~n~GKSSLi-n~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLL-NRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHH-HHHHHH
T ss_pred             EEEECCCCCCHHHHH-HHHhCC
Confidence            789999999999999 988874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.82  E-value=0.0018  Score=48.41  Aligned_cols=20  Identities=35%  Similarity=0.399  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+ +.+.+
T Consensus         8 i~vvG~~~vGKTsLi-~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFL-FRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHc
Confidence            789999999999999 65543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.81  E-value=0.002  Score=50.75  Aligned_cols=21  Identities=38%  Similarity=0.339  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.+.||.|+||||+. ++++.
T Consensus        37 ~~L~~GPpGtGKT~lA-~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLA-HIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHH-HHHHH
T ss_pred             eEEEECCCCCcHHHHH-HHHHh
Confidence            4789999999999999 98875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0024  Score=47.33  Aligned_cols=19  Identities=26%  Similarity=0.439  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++++|+.|+|||||+ +.+.
T Consensus         5 v~liG~~~vGKSsLi-~rl~   23 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMI-QRYC   23 (164)
T ss_dssp             EEEECSTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            789999999999999 5443

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.76  E-value=0.0017  Score=49.00  Aligned_cols=24  Identities=38%  Similarity=0.313  Sum_probs=19.5

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +-=.++++|+.|+|||||+ +.+.+
T Consensus        16 k~~KI~lvG~~~vGKTsLi-~~l~~   39 (182)
T d1moza_          16 KELRILILGLDGAGKTTIL-YRLQI   39 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHH-HHTCC
T ss_pred             ceEEEEEECCCCCCHHHHH-HHHhc
Confidence            3346889999999999999 77654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.002  Score=48.42  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+ +.+.+
T Consensus         7 i~vvG~~~vGKTsLi-~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLL-SRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 65543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.74  E-value=0.0031  Score=47.89  Aligned_cols=24  Identities=29%  Similarity=0.205  Sum_probs=19.8

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHH
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      -.|.=+.|.|++|+||||+.+.++
T Consensus        13 ~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          13 VYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            357889999999999999984544

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.70  E-value=0.0026  Score=48.84  Aligned_cols=31  Identities=29%  Similarity=0.397  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEe
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAM   64 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~   64 (240)
                      +++|-|+-||||||++ +.|... .-.|.++..
T Consensus         2 lI~ieG~dGsGKST~~-~~L~~~l~~~g~~v~~   33 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLV-EKLSGAFRAAGRSVAT   33 (208)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHHHHHTTCCEEE
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHHHHCCCCEEE
Confidence            5789999999999999 887653 334555443

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.68  E-value=0.003  Score=49.83  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++||.|+.||||||.. +.|.
T Consensus         2 ~iIgiTG~igSGKsTva-~~l~   22 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTA-DFIM   22 (241)
T ss_dssp             EEEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEEECCCCCCHHHHH-HHHH
Confidence            47999999999999999 8883

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0029  Score=47.41  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++++|+.|+|||||+ +.+.
T Consensus         6 ivvvG~~~vGKTsli-~r~~   24 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLL-LQFT   24 (173)
T ss_dssp             EEEESSTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHh
Confidence            789999999999999 5443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0036  Score=48.65  Aligned_cols=126  Identities=17%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEE-ccCceecceecCcchh-HHHhhchhhh-cc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVT-HDGAKLPCWALPELTS-FRQKLGDDAY-AK  108 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~-q~~~~~~~~~~~~~~~-~~~~~~~~l~-~~  108 (240)
                      .-..|+||.|.|||++. .-++.....|...    .... .   ..++. .-..+....+..+.+. ....+-.++. .+
T Consensus        44 ~n~lLvG~pGVGKTalv-~~LA~ri~~~~vp----~~L~-~---~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~  114 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIV-EGLAQRIINGEVP----EGLK-G---RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQE  114 (195)
T ss_dssp             CEEEEECCTTSCHHHHH-HHHHHHHHHTCSC----GGGT-T---CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHST
T ss_pred             CCeEEEecCCcccHHHH-HHHHHHHHhCCCC----HHHc-C---ceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCC
Confidence            35789999999999999 7776543333211    1100 0   01111 1111111111111111 0111111222 33


Q ss_pred             Cc-EEEEcCccCh---------HHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceee
Q 026304          109 LD-VIGIDEAQFF---------EDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTK  167 (240)
Q Consensus       109 p~-lllLDEP~~~---------~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~  167 (240)
                      .+ ||++||....         ..+.++|+-... .|..-++.+-.++...+.|..-..|.+...+|.+
T Consensus       115 ~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~-rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V  182 (195)
T d1jbka_         115 GNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFV  182 (195)
T ss_dssp             TTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEEC
T ss_pred             CcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh-CCCceEEecCCHHHHHHHHHcCHHHHhcCCEeec
Confidence            33 8899999541         135677877766 4544444444555555556666666655555543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.66  E-value=0.014  Score=47.08  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             ccCcEEEEEEcCCCCcHHH-HHHHHHcCchhCCceEEee
Q 026304           28 RNSGEIHVIMGPMFAGKTT-ALLRRIRSESDNGRNIAMI   65 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKST-LLl~~i~gl~~~g~~i~~~   65 (240)
                      +.+|+.+.|.+|.|||||+ .+..++....-.|..+...
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi   44 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLIL   44 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            5689999999999999996 3324443332234444433

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0029  Score=47.22  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|..|+|||||+.+.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999334443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0034  Score=46.96  Aligned_cols=19  Identities=21%  Similarity=0.364  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++++|+.|+|||||+ +.+.
T Consensus         9 I~vvG~~~vGKSSli-~~~~   27 (174)
T d1wmsa_           9 VILLGDGGVGKSSLM-NRYV   27 (174)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEECCCCCCHHHHH-HHHH
Confidence            789999999999999 5443

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.009  Score=50.58  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .+.++.|.||-|+||||++.+++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHH
Confidence            367999999999999998734333

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.003  Score=47.82  Aligned_cols=21  Identities=33%  Similarity=0.338  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|+.|+|||||+ +.+.+-
T Consensus         8 i~ivG~~~vGKTsLi-~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFL-YRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHH-HHHHCS
T ss_pred             EEEECCCCcCHHHHH-HHHhcC
Confidence            789999999999999 766543

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0031  Score=51.97  Aligned_cols=20  Identities=25%  Similarity=0.277  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++||-|+.|||||||. +.|.
T Consensus        29 iIGi~G~qGSGKSTl~-~~l~   48 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTS-IQIY   48 (286)
T ss_dssp             EEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEeECCCCCCHHHHH-HHHH
Confidence            8999999999999998 6653

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.58  E-value=0.0025  Score=47.35  Aligned_cols=20  Identities=25%  Similarity=0.331  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+ +.+.+
T Consensus         5 i~vvG~~~vGKTSli-~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLL-VRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            689999999999999 65543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.56  E-value=0.0026  Score=50.21  Aligned_cols=21  Identities=33%  Similarity=0.346  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -+.+.||.|+||||+. +++++
T Consensus        37 ~~Ll~GPpG~GKTtla-~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLA-HVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHH-HHHHH
T ss_pred             eEEEECCCCCCHHHHH-HHHHH
Confidence            4679999999999999 99976

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0036  Score=46.43  Aligned_cols=20  Identities=20%  Similarity=0.194  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++++|+.|+|||||+ +.+.
T Consensus         5 Ki~lvG~~~vGKTsLi-~r~~   24 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALT-VQFV   24 (167)
T ss_dssp             EEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHH
Confidence            4789999999999999 5443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.0033  Score=46.76  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|..|+|||||+ +.+.+
T Consensus         4 Ki~viG~~~vGKTsLi-~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLV-LRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHT
T ss_pred             EEEEECCCCCCHHHHH-HHHHh
Confidence            3789999999999999 65543

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.51  E-value=0.032  Score=41.54  Aligned_cols=54  Identities=28%  Similarity=0.389  Sum_probs=41.1

Q ss_pred             hccCcEEEEcCccC--------hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccchHHHHHhhccceeeecc
Q 026304          106 YAKLDVIGIDEAQF--------FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGSVLDIIPLADTVTKLTA  170 (240)
Q Consensus       106 ~~~p~lllLDEP~~--------~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~~~~L~~~ad~i~~l~~  170 (240)
                      -.+.++|+|||-..        .++++++|++ +. .+.-+|+++++...-         |...||.|-.|+.
T Consensus        92 ~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~-rp-~~~evVlTGr~~p~~---------L~e~ADlVTEm~~  153 (157)
T d1g5ta_          92 DPLLDMVVLDELTYMVAYDYLPLEEVISALNA-RP-GHQTVIITGRGCHRD---------ILDLADTVSELRP  153 (157)
T ss_dssp             CTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT-SC-TTCEEEEECSSCCHH---------HHHHCSEEEECCC
T ss_pred             cCccCEEeHHHHHHHHHcCCCCHHHHHHHHHh-CC-CCCEEEEECCCCCHH---------HHHhcceeeeeee
Confidence            34689999999944        3578887765 33 578999999987543         3899999988865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0035  Score=46.71  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++|+.|+|||||+ +.+.+.
T Consensus         4 i~lvG~~~vGKTsLi-~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALA-RIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHH-HHHHTC
T ss_pred             EEEECCCCcCHHHHH-HHHhCC
Confidence            689999999999999 777664

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0036  Score=46.94  Aligned_cols=20  Identities=35%  Similarity=0.215  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++|+|+.|+|||||+ +.+.
T Consensus         4 KivvvG~~~vGKTsLi-~~~~   23 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLL-IVNS   23 (177)
T ss_dssp             EEEEEESTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHH
Confidence            4689999999999999 5544

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0029  Score=46.97  Aligned_cols=21  Identities=19%  Similarity=0.169  Sum_probs=17.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      -.++|+|+.|+|||||+ +.+.
T Consensus         5 ~Kv~liG~~~vGKTsLl-~~~~   25 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLT-IQFV   25 (167)
T ss_dssp             EEEEEEESTTSSHHHHH-HHHH
T ss_pred             eEEEEECCCCcCHHHHH-HHHH
Confidence            35889999999999999 6554

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.44  E-value=0.0027  Score=47.54  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+.++|+.|+|||||+ +.+.+
T Consensus        14 kIvlvG~~~vGKTSli-~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTIL-YKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHH-HHTTC
T ss_pred             EEEEECCCCCCHHHHH-HHHhc
Confidence            5789999999999999 76653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0041  Score=45.91  Aligned_cols=19  Identities=26%  Similarity=0.335  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++++|..|+|||||+ +.+.
T Consensus         5 v~liG~~~vGKTsLl-~~~~   23 (165)
T d1z06a1           5 IIVIGDSNVGKTCLT-YRFC   23 (165)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            789999999999999 5553

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.42  E-value=0.004  Score=51.30  Aligned_cols=29  Identities=31%  Similarity=0.375  Sum_probs=25.2

Q ss_pred             CCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           25 LPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        25 sl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      =+.|.+|+..+|+|+.|+|||||+ ..|..
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~-~~i~~   65 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLL-QNIAQ   65 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHH-HHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHH-HHHHH
Confidence            357889999999999999999999 66654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.40  E-value=0.0035  Score=48.96  Aligned_cols=20  Identities=30%  Similarity=0.306  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +.+.||.|+||||++ ++++.
T Consensus        39 ~ll~Gp~G~GKTt~a-~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSV-HCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCCCchhhH-HHHHH
Confidence            678999999999999 88765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.40  E-value=0.0034  Score=49.55  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++|+|..+||||||+ +.|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~-~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLL-DHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHHH
T ss_pred             EEEEEeCCCccHHHHH-HHHHhh
Confidence            5999999999999999 888764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.0042  Score=46.19  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|..|+|||||+.+.+.|
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999445554

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0044  Score=46.02  Aligned_cols=19  Identities=32%  Similarity=0.403  Sum_probs=16.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++|+|..|+|||||+ +.+.
T Consensus         6 ivlvG~~~vGKTsLi-~r~~   24 (167)
T d1z08a1           6 VVLLGEGCVGKTSLV-LRYC   24 (167)
T ss_dssp             EEEECCTTSCHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHH
Confidence            689999999999999 5443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.0032  Score=46.96  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++|+|+.|+|||||+ +.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi-~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLV-RRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHHh
Confidence            3789999999999999 66544

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0046  Score=46.02  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+.+.+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999444443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0035  Score=46.51  Aligned_cols=20  Identities=30%  Similarity=0.488  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+|..|+|||||+ +.+.+
T Consensus         7 ivlvG~~~vGKTsli-~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLL-HQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 55543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0047  Score=46.23  Aligned_cols=20  Identities=20%  Similarity=0.129  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++|+|..|+|||||+ +.+.
T Consensus         8 Kv~lvG~~~vGKTsLi-~r~~   27 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALT-IQFI   27 (173)
T ss_dssp             EEEEEECTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHH
Confidence            4789999999999999 5443

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.24  E-value=0.0039  Score=47.09  Aligned_cols=20  Identities=25%  Similarity=0.380  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|..|+|||||+ +.+.+
T Consensus         5 v~vvG~~~vGKSSLi-~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLM-NQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 65543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.17  E-value=0.0052  Score=48.48  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..+.|.||.|+||||++ +.++..
T Consensus        44 ~~lll~GppGtGKT~l~-~~l~~~   66 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTL-RKLWEL   66 (276)
T ss_dssp             CEEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CceEEECCCCCCHHHHH-HHHHHH
Confidence            47889999999999999 888754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0054  Score=45.61  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|..|+|||||+.+.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999444434

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0052  Score=45.99  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++++|..|+|||||+ +.+.+.
T Consensus         6 v~lvG~~~vGKTsLi-~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLA-NIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHH-HHHHCC
T ss_pred             EEEECCCCcCHHHHH-HHHHhC
Confidence            789999999999999 777653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.14  E-value=0.0042  Score=51.47  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.-+.++||.|+|||+|. +.|+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lA-kalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIA-RRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHH-HHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH-HHHhhc
Confidence            3345678999999999999 999874

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0053  Score=45.54  Aligned_cols=20  Identities=20%  Similarity=0.312  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++|+|..|+|||||+ +.+.
T Consensus         6 Ki~lvG~~~vGKTsli-~rl~   25 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIM-WRFV   25 (167)
T ss_dssp             EEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHH
Confidence            3789999999999999 5554

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0054  Score=46.29  Aligned_cols=22  Identities=27%  Similarity=0.262  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|..|+|||||+.+.+.|
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999555555

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.12  E-value=0.0042  Score=47.47  Aligned_cols=19  Identities=26%  Similarity=0.375  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++|+|+.|+|||||+ +.+.
T Consensus         9 ivvvG~~~vGKTsli-~~l~   27 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLL-LRFS   27 (194)
T ss_dssp             EEEEESTTSSHHHHH-HHHH
T ss_pred             EEEECCCCcCHHHHH-HHHh
Confidence            789999999999999 6554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0038  Score=46.68  Aligned_cols=21  Identities=33%  Similarity=0.325  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      -++++|+.|+|||||+ +.+.+
T Consensus         5 Ki~vvG~~~vGKTsli-~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFV-KRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHH-HTTC-
T ss_pred             EEEEECCCCcCHHHHH-HHHHh
Confidence            3789999999999999 65544

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.0053  Score=46.53  Aligned_cols=19  Identities=26%  Similarity=0.455  Sum_probs=16.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026304           33 IHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .+.|+|..|+|||||+ +.+
T Consensus         4 KivllG~~~vGKTsll-~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFL-KQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            4789999999999999 665

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.08  E-value=0.0052  Score=48.15  Aligned_cols=19  Identities=21%  Similarity=0.443  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026304           33 IHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .+.++|++|+|||||+ +.+
T Consensus         8 KilllG~~~vGKTsll-~~~   26 (221)
T d1azta2           8 RLLLLGAGESGKSTIV-KQM   26 (221)
T ss_dssp             EEEEECSTTSSHHHHH-HHH
T ss_pred             EEEEECCCCCCHHHHH-HHH
Confidence            5789999999999999 655

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0047  Score=48.71  Aligned_cols=31  Identities=45%  Similarity=0.629  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchhCCceEEee
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESDNGRNIAMI   65 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~   65 (240)
                      ++.|.|.=|||||||+ +-+... ..|+++..+
T Consensus         5 v~iitGFLGaGKTTll-~~lL~~-~~~~riaVI   35 (222)
T d1nija1           5 VTLLTGFLGAGKTTLL-RHILNE-QHGYKIAVI   35 (222)
T ss_dssp             EEEEEESSSSSCHHHH-HHHHHS-CCCCCEEEE
T ss_pred             EEEEeeCCCCCHHHHH-HHHHhc-CCCCcEEEE
Confidence            6889999999999999 555432 345555544

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0062  Score=45.27  Aligned_cols=21  Identities=29%  Similarity=0.308  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|+.|+|||||+.+.+.|
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            899999999999999334444

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.0049  Score=46.25  Aligned_cols=20  Identities=30%  Similarity=0.419  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|..|+|||||+ +.+.+
T Consensus        10 i~vvG~~~vGKTsli-~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLL-LRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 76654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0048  Score=46.07  Aligned_cols=20  Identities=20%  Similarity=0.371  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|..|+|||||+ +.+.+
T Consensus         8 I~lvG~~~vGKTsll-~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLL-HQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHH-HHHHH
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 65543

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.99  E-value=0.0053  Score=49.18  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      +-.-+.+.||.|+|||++. +.|+.
T Consensus        39 p~~~vLL~GppGtGKT~la-~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALA-AKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCeEEEEECcCCCCHHHHH-HHHhh
Confidence            3345789999999999999 99975

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.0068  Score=45.70  Aligned_cols=22  Identities=18%  Similarity=0.280  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|..|+|||||+.+.+.+
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999334443

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0068  Score=45.85  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+|..|+|||||+.+.+.+
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999444443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.0071  Score=45.57  Aligned_cols=20  Identities=30%  Similarity=0.268  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++|+|..|+|||||+ +.+.
T Consensus         7 KivviG~~~vGKTsli-~~~~   26 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLL-ISYT   26 (183)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHH
Confidence            5889999999999999 5443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.0074  Score=44.93  Aligned_cols=20  Identities=20%  Similarity=0.130  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++++|..|+|||||+ +.+.
T Consensus         6 Ki~lvG~~~vGKTsll-~~~~   25 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALT-IQFF   25 (169)
T ss_dssp             EEEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHH
Confidence            3678999999999999 5443

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.88  E-value=0.0073  Score=44.73  Aligned_cols=22  Identities=18%  Similarity=0.277  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|..|+|||||+.+.+.|
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999444444

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0071  Score=45.95  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Q 026304           33 IHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++|+.|+|||||+.+.+.|
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999444444

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=0.0044  Score=46.33  Aligned_cols=20  Identities=30%  Similarity=0.385  Sum_probs=8.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++++|..|+|||||+ +.+.+
T Consensus         9 i~vvG~~~vGKTsLi-~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVL-FRFSE   28 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHH-HHHHh
Confidence            789999999999999 76654

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.0085  Score=46.96  Aligned_cols=22  Identities=23%  Similarity=0.298  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcC
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .+++|=|+-||||||++ +.|.-
T Consensus         3 k~IviEG~~GsGKST~~-~~L~~   24 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFV-KLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHH-HHHHH
T ss_pred             eEEEEECCCCCcHHHHH-HHHHH
Confidence            58899999999999999 98864

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0077  Score=49.18  Aligned_cols=31  Identities=13%  Similarity=0.104  Sum_probs=24.4

Q ss_pred             ecCCCCcccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           21 DRVGLPHRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        21 l~~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |+.++=.   =-+++|+||-++|||||| +.+.|.
T Consensus        25 l~~~~~~---v~vvsi~G~~~sGKS~ll-N~l~~~   55 (277)
T d1f5na2          25 LSAITQP---MVVVAIVGLYRTGKSYLM-NKLAGK   55 (277)
T ss_dssp             HHTCCSB---EEEEEEEEBTTSSHHHHH-HHHTTC
T ss_pred             HHcCCCC---EEEEEEECCCCCCHHHHH-HHHcCC
Confidence            5555322   258999999999999999 999874

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=94.53  E-value=0.01  Score=44.11  Aligned_cols=20  Identities=15%  Similarity=0.160  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .++|+|..|+|||||+ +.+.
T Consensus         6 KivlvG~~~vGKTsli-~~~~   25 (168)
T d1u8za_           6 KVIMVGSGGVGKSALT-LQFM   25 (168)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCcCHHHHH-HHHH
Confidence            4789999999999999 6543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.41  E-value=0.0058  Score=48.46  Aligned_cols=22  Identities=27%  Similarity=0.158  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.|.||.|+||||++ +.+...
T Consensus        48 ~l~l~GppGtGKT~l~-~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLA-KFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHH-HHHHHH
T ss_pred             EEEeECCCCCCHHHHH-HHHHHH
Confidence            4556799999999999 888653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.16  E-value=0.012  Score=43.98  Aligned_cols=20  Identities=20%  Similarity=0.471  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      .+.++|..|+|||||+ +.+.
T Consensus         4 KivllG~~~vGKTsl~-~r~~   23 (195)
T d1svsa1           4 KLLLLGAGESGKSTIV-KQMK   23 (195)
T ss_dssp             EEEEECSTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHh
Confidence            4789999999999999 5443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.06  E-value=0.013  Score=44.67  Aligned_cols=21  Identities=24%  Similarity=0.254  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|.-.+|||||+ +.|.|.
T Consensus         8 IaiiGhvd~GKSTL~-~~L~g~   28 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLT-KALTGV   28 (195)
T ss_dssp             EEEECSTTSSHHHHH-HHHHTC
T ss_pred             EEEEeccCCcHHHHH-HHHHhh
Confidence            699999999999999 999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.97  E-value=0.013  Score=47.96  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      -++++|.-.||||||+ +.|.|..+
T Consensus        26 ~ivVvG~~ssGKSSli-NaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVL-ENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHH-HHHhCCCC
Confidence            3789999999999999 99999643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.94  E-value=0.014  Score=43.86  Aligned_cols=20  Identities=25%  Similarity=0.492  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      -+.++|..|+|||||+ +.+.
T Consensus         4 Kiv~lG~~~vGKTsll-~r~~   23 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFI-KQMR   23 (200)
T ss_dssp             EEEEEESTTSSHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHH-HHHh
Confidence            3689999999999999 5553

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.91  E-value=0.064  Score=43.49  Aligned_cols=20  Identities=40%  Similarity=0.308  Sum_probs=17.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHH
Q 026304           32 EIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .-++|+|+.|||||||. ..|
T Consensus         7 Rni~i~gh~~~GKTtL~-e~l   26 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTT-ERI   26 (276)
T ss_dssp             EEEEEEECTTSCHHHHH-HHH
T ss_pred             eEEEEEeCCCCCHHHHH-HHH
Confidence            35899999999999999 555

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.87  E-value=0.093  Score=39.74  Aligned_cols=20  Identities=15%  Similarity=0.270  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHc
Q 026304           33 IHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++.|+|+..||||.+. ..+.
T Consensus         1 iiLVtGGarSGKS~~A-E~l~   20 (180)
T d1c9ka_           1 MILVTGGARSGKSRHA-EALI   20 (180)
T ss_dssp             CEEEEECTTSSHHHHH-HHHH
T ss_pred             CEEEECCCCccHHHHH-HHHH
Confidence            4789999999999999 5554

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.85  E-value=0.011  Score=51.43  Aligned_cols=27  Identities=26%  Similarity=0.342  Sum_probs=22.1

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++.+- =+.++||.|+|||-|. |.|+++
T Consensus        46 ei~ks-NILliGPTGvGKTlLA-r~LAk~   72 (443)
T d1g41a_          46 EVTPK-NILMIGPTGVGKTEIA-RRLAKL   72 (443)
T ss_dssp             TCCCC-CEEEECCTTSSHHHHH-HHHHHH
T ss_pred             ccccc-cEEEECCCCCCHHHHH-HHHHHH
Confidence            44443 6889999999999999 999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.019  Score=48.89  Aligned_cols=59  Identities=17%  Similarity=0.102  Sum_probs=40.0

Q ss_pred             CcEEEEcCccC---hHHHHHHHHHHHhcCCCEEEEEecChhhhhcccch--HHHHHhhccceeee
Q 026304          109 LDVIGIDEAQF---FEDLYEFCCNAADHDGKTVVVAGLDGDYLRRSFGS--VLDIIPLADTVTKL  168 (240)
Q Consensus       109 p~lllLDEP~~---~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~f~~--~~~L~~~ad~i~~l  168 (240)
                      |-++++||..+   ...+.+++.+.++ .|..++++++++..+.+.++.  ...+...|...+++
T Consensus       277 ~v~l~lDE~~~~~~~~~l~~~l~~~Rk-~Gv~~~l~~Qs~~ql~~~yg~~~a~~i~~n~~t~i~~  340 (433)
T d1e9ra_         277 RLWLFIDELASLEKLASLADALTKGRK-AGLRVVAGLQSTSQLDDVYGVKEAQTLRASFRSLVVL  340 (433)
T ss_dssp             CEEEEESCGGGSCBCSSHHHHHHHCTT-TTEEEEEEESCHHHHHHHHCHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEechHhhhcccHHHHHHHHHhCC-CCceEEEEeccHHHHHHHHhHHHHHHHHHhcCcEEEe
Confidence            44788999865   2356677777766 899999999999887665543  23345555544443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.71  E-value=0.014  Score=47.41  Aligned_cols=24  Identities=21%  Similarity=0.248  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      -++++|.-.||||||+ +.|.|..+
T Consensus        28 ~ivvvG~~SsGKSsli-NaLlg~~~   51 (299)
T d2akab1          28 QIAVVGGQSAGKSSVL-ENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHH-HHHHTSCC
T ss_pred             eEEEEcCCCCCHHHHH-HHHhCCCc
Confidence            3779999999999999 99999643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.021  Score=47.22  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.4

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +...+.++||+|+|||.|. +.|+..
T Consensus        51 p~~~~lf~Gp~GvGKT~la-k~la~~   75 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVT-VQLSKA   75 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CceEEEEECCCcchhHHHH-HHHHhh
Confidence            4457889999999999999 999864

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.46  E-value=0.021  Score=46.53  Aligned_cols=31  Identities=23%  Similarity=0.162  Sum_probs=25.4

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      |.=+.+.+|+..+|+|+.|+|||||+..++.
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence            3446788999999999999999999844443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.45  E-value=0.048  Score=46.40  Aligned_cols=107  Identities=16%  Similarity=0.056  Sum_probs=43.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCchhCCceEEeeccchhcccCCCeEEEccCceecceecCcchhHH-Hhhchhhh-ccC-
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSESDNGRNIAMIKSSKDTRYAIDSVVTHDGAKLPCWALPELTSFR-QKLGDDAY-AKL-  109 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~~~~~~~~~~~~~~v~q~~~~~~~~~~~~~~~~~-~~~~~~l~-~~p-  109 (240)
                      -..|+||.|.|||+++ .-++.....|...    .....   ..-+...-..+.......+.+.-. ..+-.++. .++ 
T Consensus        45 n~llvG~~GvGKtaiv-~~la~~i~~~~vp----~~l~~---~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~  116 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIV-EGLAQRIVKGDVP----EGLKG---KRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGE  116 (387)
T ss_dssp             CCEEEECTTSCHHHHH-HHHHHHHHHTCSC----TTSTT---CEEEEECC-----------CHHHHHHHHHHHHHTTCSS
T ss_pred             CCeEECCCCCCHHHHH-HHHHHHHHhCCCC----HHHcC---ceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCc
Confidence            3579999999999998 6555433333211    10000   000111112222222222211111 11111122 233 


Q ss_pred             cEEEEcCccCh---------HHHHHHHHHHHhcCCCEEEEEecChhh
Q 026304          110 DVIGIDEAQFF---------EDLYEFCCNAADHDGKTVVVAGLDGDY  147 (240)
Q Consensus       110 ~lllLDEP~~~---------~~i~~~l~~l~~~~g~tvi~vtHd~~~  147 (240)
                      -||++||....         ....++|+-...+....+|.+|..-++
T Consensus       117 ~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey  163 (387)
T d1qvra2         117 VILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEY  163 (387)
T ss_dssp             EEEEECCC-------------------HHHHHTTCCCEEEEECHHHH
T ss_pred             eEEEeccHHHHhcCCCCCCcccHHHHHHHHHhCCCcceeeecCHHHH
Confidence            36899999541         256778877666455777777765444

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.28  E-value=0.02  Score=47.05  Aligned_cols=21  Identities=19%  Similarity=0.121  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +||+|...+|||||+ +.|+|.
T Consensus         3 v~lvG~pn~GKStlf-n~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFF-SAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHH-HHHHC-
T ss_pred             EeEECCCCCCHHHHH-HHHHCC
Confidence            799999999999999 999885

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.14  E-value=0.02  Score=48.35  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      .++++..+.+.||.|+||||+. +.+++
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~-~~~~~  176 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLA-AALLE  176 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCCcCeEEEECCCCCCHHHHH-HHHHH
Confidence            4478889999999999999999 88876

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.06  E-value=0.03  Score=45.21  Aligned_cols=23  Identities=13%  Similarity=0.092  Sum_probs=19.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ...+++|.|.-|.|||||. +.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA-~~v~   65 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIA-SQAL   65 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHH-HHHH
T ss_pred             CceEEEEECCCCCCHHHHH-HHHH
Confidence            3569999999999999999 7663

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.94  E-value=0.02  Score=46.78  Aligned_cols=22  Identities=32%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+||+|...+|||||+ +.+++.
T Consensus        12 kiGivG~Pn~GKSTlf-nalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFF-RAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHH-HHHHHS
T ss_pred             EEEEECCCCCCHHHHH-HHHHCC
Confidence            4999999999999999 999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.90  E-value=0.026  Score=43.58  Aligned_cols=20  Identities=25%  Similarity=0.172  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHcC
Q 026304           34 HVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ++|+|.-+||||||+ ..|..
T Consensus         6 i~iiGhvd~GKSTL~-~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLT-AALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHH-HHHHH
T ss_pred             EEEEeCCCCcHHHHH-HHHHH
Confidence            799999999999999 77753

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.60  E-value=0.031  Score=42.88  Aligned_cols=22  Identities=27%  Similarity=0.244  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      -++|+|.-.+|||||+ ..|.|.
T Consensus        10 ni~iiGhVd~GKSTL~-~~L~~~   31 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLV-QAITGI   31 (205)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHSC
T ss_pred             EEEEEEccCCcHHHHH-HHHHhh
Confidence            4899999999999999 888774

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.062  Score=40.59  Aligned_cols=36  Identities=22%  Similarity=0.174  Sum_probs=26.9

Q ss_pred             EEEEEEcCC-CCcHHHHHHHHHcCchhCCceEEeecc
Q 026304           32 EIHVIMGPM-FAGKTTALLRRIRSESDNGRNIAMIKS   67 (240)
Q Consensus        32 e~~~iiGpN-GsGKSTLLl~~i~gl~~~g~~i~~~~~   67 (240)
                      +.+.|.|.+ |.||||+-..+...+.-.|+++..+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            578999998 999999984544445667877776653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=91.79  E-value=0.036  Score=44.70  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+||+|-..+|||||+ +.|++.
T Consensus         4 ~~GivG~Pn~GKSTlf-~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLF-NALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHH-HHHHHT
T ss_pred             eEEEECCCCCCHHHHH-HHHHCC
Confidence            5899999999999999 999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.73  E-value=0.019  Score=47.47  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=20.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      |.-+.|.||-|+|||||+ |.+.++
T Consensus        28 ~h~vLl~G~pG~GKT~la-r~~~~i   51 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAV-RALAAL   51 (333)
T ss_dssp             GCCEEEECCGGGCTTHHH-HHHHHH
T ss_pred             CCeEEEECCCCccHHHHH-HHHHHh
Confidence            345889999999999999 998864

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.58  E-value=0.039  Score=45.06  Aligned_cols=32  Identities=25%  Similarity=0.312  Sum_probs=26.2

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      |.-+.+-+|+..+|+|+.|+|||+|+..++.+
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            44567899999999999999999998445543

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.041  Score=45.43  Aligned_cols=20  Identities=35%  Similarity=0.474  Sum_probs=18.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHH
Q 026304           29 NSGEIHVIMGPMFAGKTTAL   48 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLL   48 (240)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999986

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=91.43  E-value=0.035  Score=45.10  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=23.5

Q ss_pred             CCCCcccCcEEEEEEcCCCCcHHHHH
Q 026304           23 VGLPHRNSGEIHVIMGPMFAGKTTAL   48 (240)
Q Consensus        23 ~vsl~i~~Ge~~~iiGpNGsGKSTLL   48 (240)
                      |.=+.+-+|+..+|+|+.|+|||+|+
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~   84 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVA   84 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHH
T ss_pred             eccccccCCceEeeccCCCCChHHHH
Confidence            45567889999999999999999998

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.38  E-value=0.042  Score=45.47  Aligned_cols=19  Identities=37%  Similarity=0.485  Sum_probs=17.5

Q ss_pred             CcEEEEEEcCCCCcHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTAL   48 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLL   48 (240)
                      .|++..+.|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999986

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.37  E-value=0.049  Score=44.05  Aligned_cols=20  Identities=40%  Similarity=0.400  Sum_probs=15.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026304           33 IHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .+.|.|+-||||||.|+..+
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHH
Confidence            46788999999999874544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.25  E-value=0.044  Score=43.88  Aligned_cols=36  Identities=22%  Similarity=0.182  Sum_probs=23.8

Q ss_pred             ccCcEEEEcCccChH-HHHHHHHHHHhcCCCEEEEEec
Q 026304          107 AKLDVIGIDEAQFFE-DLYEFCCNAADHDGKTVVVAGL  143 (240)
Q Consensus       107 ~~p~lllLDEP~~~~-~i~~~l~~l~~~~g~tvi~vtH  143 (240)
                      .+.+++++||.+-.. ..++++..+.. .+..+++++=
T Consensus       205 ~~~~~i~vDE~QD~~~~~~~~l~~~~~-~~~~~~~~GD  241 (306)
T d1uaaa1         205 NKIRYLLVDEYQDTNTSQYELVKLLVG-SRARFTVVGD  241 (306)
T ss_dssp             TTCSEEEESCGGGCBHHHHHHHHHHHT-TTCCEEEECC
T ss_pred             HHhhHHHHHHHHHhhHHHHhhhhhccc-CCCcceEeec
Confidence            478899999997643 34556666665 4556666553

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.73  E-value=0.065  Score=44.15  Aligned_cols=28  Identities=18%  Similarity=0.198  Sum_probs=22.6

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCchh
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSESD   57 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl~~   57 (240)
                      .+.-.+.++||+|+|||.+. +.|+...+
T Consensus        51 kp~~~~lf~Gp~G~GKt~la-k~la~~l~   78 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELA-KTLAATLF   78 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHH-HHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHH-HHHHHHhc
Confidence            34457789999999999999 98887544

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.67  E-value=0.12  Score=42.97  Aligned_cols=23  Identities=26%  Similarity=0.156  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCch
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSES   56 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl~   56 (240)
                      .+.|=|+-|+||||++ +.|....
T Consensus         8 rI~iEG~iGsGKSTl~-~~L~~~l   30 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTG-RVMASAA   30 (333)
T ss_dssp             EEEEECSTTSSHHHHH-HHHHSGG
T ss_pred             EEEEECCccCCHHHHH-HHHHHHh
Confidence            4677899999999999 9887753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=90.53  E-value=0.058  Score=41.31  Aligned_cols=21  Identities=29%  Similarity=0.172  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHcCc
Q 026304           34 HVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ++|+|.-++|||||+ ..|.+.
T Consensus         6 i~iiGHvd~GKSTL~-~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLT-AAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHH-HHHHHH
T ss_pred             EEEEeCCCCcHHHHH-HHHHHH
Confidence            799999999999999 877653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.31  E-value=0.07  Score=41.51  Aligned_cols=18  Identities=28%  Similarity=0.547  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 026304           34 HVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i   52 (240)
                      ++++|.-++|||||+ ..|
T Consensus         6 i~viGHVd~GKTTL~-~~L   23 (224)
T d1jnya3           6 LIVIGHVDHGKSTLV-GRL   23 (224)
T ss_dssp             EEEEESTTSSHHHHH-HHH
T ss_pred             EEEEecCCCCHHHHH-HHH
Confidence            799999999999999 666

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.28  E-value=0.063  Score=44.63  Aligned_cols=22  Identities=32%  Similarity=0.229  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+.|=|+-||||||++ +.|...
T Consensus         6 rI~IEG~iGsGKTTl~-~~La~~   27 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTT-QLLVAL   27 (329)
T ss_dssp             EEEECSCTTSSHHHHH-HHHTC-
T ss_pred             EEEEECCcCCCHHHHH-HHHHHH
Confidence            4788899999999999 988753

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.25  E-value=0.064  Score=44.40  Aligned_cols=19  Identities=37%  Similarity=0.494  Sum_probs=17.7

Q ss_pred             CcEEEEEEcCCCCcHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTAL   48 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLL   48 (240)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999997

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=89.76  E-value=0.079  Score=44.57  Aligned_cols=27  Identities=19%  Similarity=0.347  Sum_probs=21.0

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +++++. +.++||.|+|||-|. |.|+.+
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElA-k~LA~~   91 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMA-QTLAKH   91 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHH-HHHHHH
T ss_pred             cCCCcc-eeeeCCCCccHHHHH-HHHHhh
Confidence            345554 566799999999999 998754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.91  E-value=0.079  Score=44.05  Aligned_cols=31  Identities=23%  Similarity=0.142  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCc-hhCCceEEe
Q 026304           33 IHVIMGPMFAGKTTALLRRIRSE-SDNGRNIAM   64 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i~gl-~~~g~~i~~   64 (240)
                      .+.|=|+-||||||++ +.|... ...|.++..
T Consensus         7 rI~IEG~iGsGKSTl~-~~L~~~l~~~g~~v~~   38 (331)
T d1osna_           7 RIYLDGAYGIGKTTAA-EEFLHHFAITPNRILL   38 (331)
T ss_dssp             EEEEEESSSSCTTHHH-HHHHHTTTTSGGGEEE
T ss_pred             EEEEECCCCCCHHHHH-HHHHHHHhhcCCceEE
Confidence            4788899999999999 888653 333444433

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.60  E-value=1.1  Score=33.70  Aligned_cols=23  Identities=26%  Similarity=0.249  Sum_probs=16.6

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHH
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i   52 (240)
                      .+....|..|.|+|||-..+.++
T Consensus        84 ~~~~~ll~~~tG~GKT~~a~~~~  106 (206)
T d2fz4a1          84 VDKRGCIVLPTGSGKTHVAMAAI  106 (206)
T ss_dssp             TTSEEEEEESSSTTHHHHHHHHH
T ss_pred             hCCCcEEEeCCCCCceehHHhHH
Confidence            34456688999999998763444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=87.50  E-value=0.15  Score=39.64  Aligned_cols=19  Identities=26%  Similarity=0.394  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHc
Q 026304           34 HVIMGPMFAGKTTALLRRIR   53 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i~   53 (240)
                      ++++|.-.+|||||+ ..|.
T Consensus        12 i~viGHVd~GKSTL~-~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLI-GRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHH-HHHH
T ss_pred             EEEEcCCCCCHHHHH-HHHH
Confidence            689999999999999 7774

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.19  E-value=0.2  Score=35.28  Aligned_cols=39  Identities=13%  Similarity=0.086  Sum_probs=28.4

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC-c-hh-CCceEEeeccc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS-E-SD-NGRNIAMIKSS   68 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g-l-~~-~g~~i~~~~~~   68 (240)
                      ++|=.+.+.|-+||||||+. +.|.- + .+ .|+.+..+...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia-~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLS-IALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHH-HHHHHHHTTSCSCCCEEECCCT
T ss_pred             ccceEEEEeCCCCCCHHHHH-HHHHHHHHHhcCCcceEEecCC
Confidence            56778899999999999998 76633 3 33 35777766443

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.53  E-value=0.17  Score=39.77  Aligned_cols=19  Identities=26%  Similarity=0.412  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 026304           33 IHVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        33 ~~~iiGpNGsGKSTLLl~~i   52 (240)
                      -++++|.-++|||||+ ..|
T Consensus         8 Ni~iiGHvD~GKsTl~-~~l   26 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTT-GHL   26 (239)
T ss_dssp             EEEEEECTTSCHHHHH-HHH
T ss_pred             EEEEEeCCCCCHHHHH-HHH
Confidence            4789999999999998 544

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.11  E-value=0.19  Score=39.60  Aligned_cols=24  Identities=25%  Similarity=0.133  Sum_probs=20.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           31 GEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        31 Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      +.-+.|.|+.|+||+++. +.|...
T Consensus        23 ~~pvlI~Ge~GtGK~~~A-~~ih~~   46 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVA-RLIHKL   46 (247)
T ss_dssp             CSCEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCEEEECCCCcCHHHHH-HHHHHh
Confidence            445889999999999999 999753

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.99  E-value=0.14  Score=40.46  Aligned_cols=18  Identities=39%  Similarity=0.394  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 026304           34 HVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i   52 (240)
                      ++|+|.-++|||||+ ..|
T Consensus        27 i~iiGHVD~GKSTL~-~~L   44 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLG-GNI   44 (245)
T ss_dssp             EEEEECGGGTHHHHH-HHH
T ss_pred             EEEEeeCCCCHHHHH-HHH
Confidence            899999999999998 666

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=84.87  E-value=0.41  Score=36.24  Aligned_cols=35  Identities=31%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             cEEEEEE-cCCCCcHHHHHHHHHcCchhCCceEEee
Q 026304           31 GEIHVIM-GPMFAGKTTALLRRIRSESDNGRNIAMI   65 (240)
Q Consensus        31 Ge~~~ii-GpNGsGKSTLLl~~i~gl~~~g~~i~~~   65 (240)
                      |+++++. +.-|.||||+..++...+.-.|+++..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~Vlli   37 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV   37 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            7889999 7789999999844444344466666544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=84.64  E-value=0.32  Score=38.69  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.7

Q ss_pred             CcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           30 SGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        30 ~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      .+-.++|+|-..+|||||+ +.|.|-
T Consensus       111 ~~~~v~vvG~PNvGKSsli-N~L~~~  135 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLI-NRLAKK  135 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHH-HHHHTS
T ss_pred             CceEEEEEecCccchhhhh-hhhhcc
Confidence            4556999999999999999 999874

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.63  E-value=0.18  Score=41.98  Aligned_cols=18  Identities=17%  Similarity=0.235  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHH
Q 026304           34 HVIMGPMFAGKTTALLRRI   52 (240)
Q Consensus        34 ~~iiGpNGsGKSTLLl~~i   52 (240)
                      ++|+|.-|+|||||+ ..|
T Consensus        20 I~iiGhvd~GKTTL~-d~L   37 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLT-DSL   37 (341)
T ss_dssp             EEEECCGGGTHHHHH-HHH
T ss_pred             EEEEeCCCCcHHHHH-HHH
Confidence            899999999999999 666

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=84.47  E-value=0.29  Score=44.42  Aligned_cols=25  Identities=32%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ...+.+.|.|.+|||||+-. |.|..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~-k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEAS-KKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHH-HHHHH
Confidence            46789999999999999988 76654

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.44  E-value=0.17  Score=38.09  Aligned_cols=20  Identities=35%  Similarity=0.306  Sum_probs=16.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHH
Q 026304           29 NSGEIHVIMGPMFAGKTTAL   48 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLL   48 (240)
                      ..|+-+.+.+|.|||||+..
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            35667789999999999864

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.28  E-value=0.17  Score=39.12  Aligned_cols=21  Identities=24%  Similarity=0.053  Sum_probs=17.8

Q ss_pred             ccCcEEEEEEcCCCCcHHHHH
Q 026304           28 RNSGEIHVIMGPMFAGKTTAL   48 (240)
Q Consensus        28 i~~Ge~~~iiGpNGsGKSTLL   48 (240)
                      +-.|+-+.+++|.|+|||+..
T Consensus        55 ~l~g~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          55 ILRKESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             HHTTCCEECCCCBTSCSHHHH
T ss_pred             HHCCCCEEEEecCCChHHHHH
Confidence            347888999999999999865

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=84.16  E-value=0.3  Score=44.51  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=21.9

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ...+.+.|.|.+|||||+-. |.+..+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~-k~il~y  148 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENT-KKVIQY  148 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHH-HHHHHH
Confidence            45789999999999999988 777553

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.93  E-value=0.26  Score=39.42  Aligned_cols=28  Identities=21%  Similarity=0.268  Sum_probs=23.2

Q ss_pred             cccCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           27 HRNSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        27 ~i~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ..++-..+.+.||-++||||++ ..|..+
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~-~~i~~~  127 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIA-EAIAHT  127 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCccEEEEEEcCCCCCHHHHH-HHHHHH
Confidence            3456668899999999999999 888754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.63  E-value=0.46  Score=37.14  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=24.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHHcCchhCCceEEee
Q 026304           32 EIHVIMGPMFAGKTTALLRRIRSESDNGRNIAMI   65 (240)
Q Consensus        32 e~~~iiGpNGsGKSTLLl~~i~gl~~~g~~i~~~   65 (240)
                      ..++|.|.=|.||||+..++...+...|+++..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllI   35 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV   35 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEE
Confidence            3678999999999999855555555567666544

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=83.44  E-value=0.34  Score=44.15  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ...+.+.|.|.+|||||+-. |.|..
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~-k~il~  113 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENT-KKVIQ  113 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHH-HHHHH
Confidence            35789999999999999987 76644

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=82.21  E-value=0.4  Score=44.27  Aligned_cols=26  Identities=27%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ...+.+.|.|.+|||||+-. |.+..+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~-K~il~y  146 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNT-KRVIQY  146 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHH-HHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHH-HHHHHH
Confidence            45789999999999999987 766543

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=80.32  E-value=0.47  Score=43.70  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=21.0

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcCc
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRSE   55 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~gl   55 (240)
                      ...+.+.|.|.+|||||.-. |.+..+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~-K~il~y  144 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENT-KKVIMY  144 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHH-HHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHH-HHHHHH
Confidence            35789999999999999987 666543

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=80.20  E-value=0.44  Score=43.50  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=21.2

Q ss_pred             cCcEEEEEEcCCCCcHHHHHHHHHcC
Q 026304           29 NSGEIHVIMGPMFAGKTTALLRRIRS   54 (240)
Q Consensus        29 ~~Ge~~~iiGpNGsGKSTLLl~~i~g   54 (240)
                      ...+.+.|.|.+|||||+-. +.+..
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~-k~il~  116 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSA-KYAMR  116 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHH-HHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHH-HHHHH
Confidence            46789999999999999987 76654