Citrus Sinensis ID: 026314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Secondary Structure (PSIPRED)
cccHHHHHHcccEEEcccEEEEEEEEccEEEEEEEccccccccccccccccccEEEccEEEEcccccHHHHHHHHcccccccccccccccccEEEEccccccccccEEEccccccccEEEEEccccccEEEccccccccccccHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEccccccccccEEEcccccccccEEEEEccccHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccEEEEEcccccEEEccccEEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccHHHHHHHHccccccccccHHEccccEEEEcccccccccEEEEccccccccEEEEEccccccEEEcccEEEEEcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHEEEEcccccccccEEEEcccccHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mwvqgeaenhgttfsnntsvigghlegNCMNVYISesknlrnwdgvsplqpeltlipklvvnsaglsaPALAKRFigldnvfippayyargcyfslantkvapfkhliypipedgglgvhvtldldgqikfgpdvewidgidDTLSFLNRfdysvnanraerfYPEIRkyypdlrdgslqpsyagirpklsgprqspidfviqgddthgvpglvnlfgiespgltsSMAIAEYVAAKFLR
Flexible Loop (DISEMBL)
mwvqgeaenhgttfsnntsviGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDysvnanraerfypEIRKYYPDLRDGSLQPSYAgirpklsgprQSPIDFVIQGDDTHGVPGLVNLFGiespgltssMAIAEYVAAKFLR
Low Complexity Region (SEG)
MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Disordered region (IsUnstruct)
****************NTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDG********************IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK***
Disordered Region (DISOPRED)
MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Disordered Region (DISEMBL)
*********HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Disordered Region (DISPRO)
MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
P37339	422	L-2-hydroxyglutarate oxid	N/A	no	0.7	0.398	0.289	7e-07
P47285	384	Uncharacterized protein M	yes	no	0.537	0.335	0.300	5e-05

>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12) GN=lhgO PE=1 SV=3

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 39/207 (18%)

Query: 60  VVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--L 117
           +++ +GL A  L K  +GL+  FI   +  RG YF LA        HLIYPIP+     L
Sbjct: 196 LISCSGLMADRLVK-MLGLEPGFIICPF--RGEYFRLAPEHNQIVNHLIYPIPDPAMPFL 252

Query: 118 GVHVTLDLDGQIKFGPDVEWI---DG-------IDDTLSFL----------NRFDYSV-- 155
           GVH+T  +DG +  GP+       +G         DTL  L          N     +  
Sbjct: 253 GVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGE 312

Query: 156 --NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPID---FVIQGDDTHGV 210
             N+     +   ++KY P L    LQP  AG+R +   P    ID   FV         
Sbjct: 313 MKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVT-------T 365

Query: 211 PGLVNLFGIESPGLTSSMAIAEYVAAK 237
           P  ++     SP  TS++ I  ++ +K
Sbjct: 366 PRTIHTCNAPSPAATSAIPIGAHIVSK 392

Oxidizes L-2-hydroxyglutarate, probably to recover alpha-ketoglutarate mistakenly reduced by other enzymes or formed during growth on propionate.
Escherichia coli (strain K12) (taxid: 83333)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5

>sp|P47285|Y039_MYCGE Uncharacterized protein MG039 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG039 PE=4 SV=1

 Score = 48.1 bits (113), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 14/143 (9%)

Query: 90  RGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLN 149
           +G Y  L N        +I+ +P   G GV V   LDG I  GP+   ++GI+   +   
Sbjct: 231 KGQYLVLKNQNNLKINTIIFMVPTIHGKGVVVAEMLDGNILVGPNA--VEGIEKNKT--- 285

Query: 150 RFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG 209
               S++ +   +     +K  P L+  +   S+AG R           DFVI+   ++ 
Sbjct: 286 ---RSIDLDSINQIKTIGKKMVPSLQFENSIYSFAGSR----AIDIETNDFVIRTAKSN- 337

Query: 210 VPGLVNLFGIESPGLTSSMAIAE 232
            P  + L G++SPGLTSS AIA+
Sbjct: 338 -PNFIILGGMKSPGLTSSPAIAK 359

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
357497233	483	L-2-hydroxyglutarate dehydrogenase [Medi	0.995	0.494	0.765	1e-110
224089869	430	predicted protein [Populus trichocarpa]	0.983	0.548	0.780	1e-108
225440270	424	PREDICTED: l-2-hydroxyglutarate dehydrog	0.983	0.556	0.754	1e-102
388493312	418	unknown [Lotus japonicus]	0.979	0.562	0.719	1e-100
356514080	410	PREDICTED: l-2-hydroxyglutarate dehydrog	0.979	0.573	0.719	1e-100
255572899	417	NAD dehydrogenase, putative [Ricinus com	0.983	0.565	0.699	2e-98
133902300	423	putative FAD-dependent oxidoreductase [G	0.979	0.555	0.726	7e-96
188509918	423	putative oxidoreductase protein [Gossypi	0.979	0.555	0.726	1e-95
133902322	423	putative FAD-dependent oxidoreductase [G	0.979	0.555	0.726	1e-95
133902307	423	putative FAD-dependent oxidoreductase [G	0.979	0.555	0.722	1e-95

>gi|357497233|ref|XP_003618905.1| L-2-hydroxyglutarate dehydrogenase [Medicago truncatula] gi|355493920|gb|AES75123.1| L-2-hydroxyglutarate dehydrogenase [Medicago truncatula]

 Score =  402 bits (1033), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/239 (76%), Positives = 217/239 (90%)

Query: 1   MWVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLV 60
           M VQGEAENHG TF+ N++VIGGH+EGN + +++SE+K+L+ W+G S LQPEL LIPKLV
Sbjct: 245 MLVQGEAENHGATFTYNSTVIGGHMEGNEICLHVSETKSLKEWNGKSSLQPELVLIPKLV 304

Query: 61  VNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVH 120
           VNSAGLSA ALAKRF GL+N  IPPAYYARGCYF+L+NTK +PF+HLIYPIPEDGGLGVH
Sbjct: 305 VNSAGLSALALAKRFTGLENKVIPPAYYARGCYFTLSNTKASPFRHLIYPIPEDGGLGVH 364

Query: 121 VTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQ 180
           VTLDL+GQ+KFGPDVEWIDG+DD  SF N+FDYSV ANRAE+FYPEIRKYYP+L+DGSL+
Sbjct: 365 VTLDLNGQVKFGPDVEWIDGVDDISSFQNKFDYSVQANRAEKFYPEIRKYYPNLKDGSLE 424

Query: 181 PSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
           P Y+GIRPKLSGP QSP+DFVIQG+D HGVPGL+NLFGIESPGLTSS+AIA++++ KFL
Sbjct: 425 PGYSGIRPKLSGPCQSPVDFVIQGEDIHGVPGLINLFGIESPGLTSSLAIADFISTKFL 483

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089869|ref|XP_002308844.1| predicted protein [Populus trichocarpa] gi|222854820|gb|EEE92367.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/237 (78%), Positives = 217/237 (91%), Gaps = 1/237 (0%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAEN+GTTFS N++VI GHLEGNC+++YI ESK+L NW+G  PL PEL L+PKLVVNSA
Sbjct: 194 GEAENNGTTFSYNSTVISGHLEGNCLHLYIVESKDLENWNGDYPLHPELVLVPKLVVNSA 253

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD 124
           GLS+ ALAKRF GLDN  IPP ++ARGCYF+L++TKV PF+HLIYPIPEDGGLGVHVTLD
Sbjct: 254 GLSSLALAKRFHGLDNGIIPPGFFARGCYFTLSSTKVPPFEHLIYPIPEDGGLGVHVTLD 313

Query: 125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
           LDG +KFGPDVEWIDGIDD  SFLN++DYSV+A+RAERFYPEIRKYYP+L+DGSLQP Y+
Sbjct: 314 LDGHLKFGPDVEWIDGIDDVSSFLNKYDYSVSASRAERFYPEIRKYYPNLKDGSLQPGYS 373

Query: 185 GIRPKLSGPRQSPIDFVI-QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 240
           GIRPK+SGPRQSPIDFVI QG+D HGVPGLVNLFGIESPGLT+SMAIAE++A++FL+
Sbjct: 374 GIRPKISGPRQSPIDFVIQQGEDIHGVPGLVNLFGIESPGLTASMAIAEHIASRFLK 430

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440270|ref|XP_002278843.1| PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial [Vitis vinifera] gi|297741744|emb|CBI32876.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/236 (75%), Positives = 203/236 (86%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAENH TTF  NT+VIGGHLEG+ + ++ISESK+L NWD   PL PE+ L+ KLVVNSA
Sbjct: 189 GEAENHRTTFCYNTAVIGGHLEGDHICLHISESKDLENWDRRFPLHPEVILMAKLVVNSA 248

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD 124
           GLSAPALAKRF GL++  IP ++YARGCYF L+  K  PFKHLIYPIPEDGGLGVHVTLD
Sbjct: 249 GLSAPALAKRFDGLNSTVIPASHYARGCYFVLSKMKTPPFKHLIYPIPEDGGLGVHVTLD 308

Query: 125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
           LDGQIKFGPDVEWI+G DD  SFLN+FDYSV A R ERFYPEIRKYYP+L+D SL+P YA
Sbjct: 309 LDGQIKFGPDVEWINGADDISSFLNKFDYSVCAKRVERFYPEIRKYYPNLKDDSLEPGYA 368

Query: 185 GIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 240
           GIRPKLSG +QS +DFVIQG+D HGVPGLVNLFGIESPGLTSSMAIAE++ A++LR
Sbjct: 369 GIRPKLSGAQQSAVDFVIQGEDIHGVPGLVNLFGIESPGLTSSMAIAEHIVARYLR 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493312|gb|AFK34722.1| unknown [Lotus japonicus]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/235 (71%), Positives = 204/235 (86%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAENH TTF+ N++VIGGHLEG  + ++I E+K L+ WDG S L PEL L+PKL+VNS 
Sbjct: 183 GEAENHRTTFTYNSTVIGGHLEGKEICLHILETKCLKEWDGTSILHPELILVPKLLVNST 242

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD 124
           GLSAPALAKRF  L +  IPP+YYARGCYF+L++TK +PF+HLIYPIPEDGGLGVHVTLD
Sbjct: 243 GLSAPALAKRFTSLQSEVIPPSYYARGCYFTLSDTKASPFRHLIYPIPEDGGLGVHVTLD 302

Query: 125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
           L+GQIKFGPDVEWIDG+DD  SF N+FDYSV+ANRAE+FYP IR YYP+L+D +L+P YA
Sbjct: 303 LNGQIKFGPDVEWIDGVDDISSFQNKFDYSVHANRAEQFYPAIRSYYPNLKDRALEPGYA 362

Query: 185 GIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
           GIRPKLS P QSP+DFVIQG+D HG+PGLVNLFGIESPGLT+S+AIA++V+ + L
Sbjct: 363 GIRPKLSRPGQSPVDFVIQGEDIHGIPGLVNLFGIESPGLTASLAIADFVSTRLL 417

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514080|ref|XP_003525735.1| PREDICTED: l-2-hydroxyglutarate dehydrogenase, mitochondrial-like [Glycine max]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/235 (71%), Positives = 204/235 (86%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAEN GTTF+ N++VIGGHLEG+ + ++++E+  L  W G S LQPEL LIPKLVVNS 
Sbjct: 176 GEAENQGTTFTYNSTVIGGHLEGSEICLHVTETDRLTEWKGTSILQPELLLIPKLVVNST 235

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD 124
           GLS+P LAKRF G  +  +PPAYYARGCYF+L+NTK +PF+ LIYPIPEDGG+GVHVT+D
Sbjct: 236 GLSSPVLAKRFNGPKSGVVPPAYYARGCYFTLSNTKNSPFRRLIYPIPEDGGIGVHVTID 295

Query: 125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
           L+GQ+KFGP+VEWID +DD  SF N++DYSVNANRAERFYPEIRKYYP+L+DGSL+P Y+
Sbjct: 296 LNGQVKFGPNVEWIDSVDDISSFQNKYDYSVNANRAERFYPEIRKYYPNLKDGSLEPGYS 355

Query: 185 GIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
           GIRPKLSGP Q P DFVIQG+D HGVPGL+NLFGIESPGLTSSMAIAE+++ +FL
Sbjct: 356 GIRPKLSGPLQPPSDFVIQGEDIHGVPGLINLFGIESPGLTSSMAIAEFISTRFL 410

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572899|ref|XP_002527381.1| NAD dehydrogenase, putative [Ricinus communis] gi|223533252|gb|EEF35006.1| NAD dehydrogenase, putative [Ricinus communis]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 165/236 (69%), Positives = 206/236 (87%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAEN+ TT S N++V GGHLEGN +++++    +L NWDG S L PEL LIP+LV+NSA
Sbjct: 182 GEAENYKTTLSYNSTVTGGHLEGNHLHLHVIGRNHLENWDGKSVLHPELILIPELVINSA 241

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD 124
           GLSA  LA++F GL +  IPPA++ARGCYF+L+NT++ PF+HLIYPIPEDGGLGVHVTLD
Sbjct: 242 GLSALQLARKFDGLPSTMIPPAHFARGCYFTLSNTRIPPFQHLIYPIPEDGGLGVHVTLD 301

Query: 125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
           LDGQ+KFGPDVEWI GI+D  SFL+R+DY+V+A+R ERFYPEIRKYYP+L+ G+L+  YA
Sbjct: 302 LDGQVKFGPDVEWIHGIEDISSFLDRYDYTVSAHRVERFYPEIRKYYPNLKTGTLEIGYA 361

Query: 185 GIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 240
           GIRPK+SGP Q+P+DFVIQG+D HGVPGL+NLFGIESPGLTSSMAIAEY+A++FL+
Sbjct: 362 GIRPKVSGPGQAPMDFVIQGEDIHGVPGLINLFGIESPGLTSSMAIAEYIASRFLK 417

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902300|gb|ABO41831.1| putative FAD-dependent oxidoreductase [Gossypium raimondii]

 Score =  355 bits (912), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 198/238 (83%), Gaps = 3/238 (1%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAE +G TFS NT+VIGGHLEGN M +++ E+K L NWDG +PLQ +L L+PK+VVNS+
Sbjct: 184 GEAETNGATFSYNTAVIGGHLEGNQMVLHVCETKTLTNWDGNTPLQLDLLLMPKIVVNSS 243

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHV 121
           GLSAP LAKRF GL+   IPPAYYARG YF L+N   T+  PFKHLIYP+PE+GGLGVHV
Sbjct: 244 GLSAPTLAKRFHGLNTAIIPPAYYARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHV 303

Query: 122 TLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQP 181
           TLDLDGQ+KFGPDVEWI  + DT +FLN+FDYSV+A+   RFYPEIRKYYP+L+DGSL P
Sbjct: 304 TLDLDGQLKFGPDVEWIPHVPDTTNFLNKFDYSVSADHVARFYPEIRKYYPNLKDGSLIP 363

Query: 182 SYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
            YAGIRPKL GP QS  DFVIQG+D HGV GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 364 GYAGIRPKLHGPGQSACDFVIQGEDIHGVGGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509918|gb|ACD56607.1| putative oxidoreductase protein [Gossypioides kirkii]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 199/238 (83%), Gaps = 3/238 (1%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAE +G TFS NT+VIGGHLEGN M +++ E+K L NWDG +PLQP+L L+P++VVNS+
Sbjct: 184 GEAETNGATFSYNTAVIGGHLEGNQMVLHVCETKTLGNWDGNTPLQPDLLLMPQIVVNSS 243

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHV 121
           GLSAPALAKRF GL+   IPPAY ARG YF L+N   T+  PFKHLIYP+PE+GGLGVHV
Sbjct: 244 GLSAPALAKRFHGLNTATIPPAYCARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHV 303

Query: 122 TLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQP 181
           TLDLDGQ+KFGPDVEWI  + DT +FLN+FDYSV+A+R  RFYPEIRKYYP+L+DGSL P
Sbjct: 304 TLDLDGQLKFGPDVEWIPHVPDTTNFLNKFDYSVSADRVARFYPEIRKYYPNLKDGSLIP 363

Query: 182 SYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
            YAGIRPKL GP QS  DFVIQG+D H V GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 364 GYAGIRPKLHGPGQSACDFVIQGEDIHEVAGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902322|gb|ABO41850.1| putative FAD-dependent oxidoreductase [Gossypium hirsutum]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/238 (72%), Positives = 198/238 (83%), Gaps = 3/238 (1%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAE +G TFS NT+VIGGHLEGN M +++ E+K L NWDG +PLQ +L L+PK+VVNS+
Sbjct: 184 GEAETNGATFSYNTAVIGGHLEGNQMVLHVCETKTLTNWDGNTPLQLDLLLMPKIVVNSS 243

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHV 121
           GLSAP LAKRF GL+   IPPAYYARG YF L+N   T+  PFKHLIYP+PE+GGLGVHV
Sbjct: 244 GLSAPTLAKRFHGLNTAIIPPAYYARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHV 303

Query: 122 TLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQP 181
           TLDLDGQ+KFGPDVEWI  + DT +FLN+FDYSV+A+   RFYPEIRKYYP+L+DGSL P
Sbjct: 304 TLDLDGQLKFGPDVEWIPHVPDTTNFLNKFDYSVSADHVARFYPEIRKYYPNLKDGSLIP 363

Query: 182 SYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
            YAGIRPKL GP QS  DFVIQG+D HGV GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 364 GYAGIRPKLHGPGQSACDFVIQGEDIHGVGGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|133902307|gb|ABO41837.1| putative FAD-dependent oxidoreductase [Gossypium arboreum]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 172/238 (72%), Positives = 198/238 (83%), Gaps = 3/238 (1%)

Query: 5   GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSA 64
           GEAE +G TFS NT+VIGGHLEGN + +++ E+K L NWDG +PLQP+L L+P +VVNS+
Sbjct: 184 GEAETNGATFSYNTAVIGGHLEGNQIVLHVCETKTLTNWDGNTPLQPDLLLMPIIVVNSS 243

Query: 65  GLSAPALAKRFIGLDNVFIPPAYYARGCYFSLAN---TKVAPFKHLIYPIPEDGGLGVHV 121
           GLSAP LAKRF GL+   IPPAYYARG YF L+N   T+  PFKHLIYP+PE+GGLGVHV
Sbjct: 244 GLSAPTLAKRFHGLNTAIIPPAYYARGSYFILSNANSTRHPPFKHLIYPVPEEGGLGVHV 303

Query: 122 TLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQP 181
           TLDLDGQ+KFGPDVEWI  + DT +FLN+FDYSV+ +R  RFYPEIRKYYP+L+DGSL P
Sbjct: 304 TLDLDGQLKFGPDVEWIPHVPDTTNFLNKFDYSVSVDRVARFYPEIRKYYPNLKDGSLIP 363

Query: 182 SYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL 239
            YAGIRPKL GP QS  DFVIQG+D HGV GLVNLFGIESPGLTSSMAIAEYVAA  L
Sbjct: 364 GYAGIRPKLHGPGQSACDFVIQGEDIHGVGGLVNLFGIESPGLTSSMAIAEYVAALLL 421

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2103660	483	AT3G56840 [Arabidopsis thalian	0.979	0.486	0.655	1.9e-83
CGD|CAL0000481	400	orf19.6238 [Candida albicans (	0.883	0.53	0.360	4.4e-29
UNIPROTKB|Q5AB11	400	CaO19.6238 "Potential FAD-depe	0.883	0.53	0.360	4.4e-29
UNIPROTKB|P37339	422	lhgO [Escherichia coli K-12 (t	0.3	0.170	0.402	2.8e-07
UNIPROTKB|Q9KN19	403	VC_A0147 "Transcriptional regu	0.308	0.183	0.405	7.1e-07
TIGR_CMR|VC_A0147	403	VC_A0147 "transcriptional regu	0.308	0.183	0.405	7.1e-07
UNIPROTKB|Q4KDZ4	397	lhgO "L-2-hydroxyglutarate oxi	0.304	0.183	0.4	3.1e-06
UNIPROTKB|Q83AP2	408	CBU_1839 "Aminobutyraldehyde d	0.3	0.176	0.287	1.1e-05
TIGR_CMR|CBU_1839	408	CBU_1839 "FAD-dependent oxidor	0.3	0.176	0.287	1.1e-05
FB|FBgn0032729	455	CG10639 [Drosophila melanogast	0.337	0.178	0.340	3.1e-05

TAIR|locus:2103660 AT3G56840 [Arabidopsis thaliana (taxid:3702)]

 Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
 Identities = 156/238 (65%), Positives = 194/238 (81%)

Query:     3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVN 62
             +QGEA+N+  TFS NT V+ G +E   M++Y++++   R  +     + +L LIP LVVN
Sbjct:   249 LQGEAQNNHATFSYNTVVLNGRVEEKKMHLYVADT---RFSESRCEAEAQLELIPNLVVN 305

Query:    63 SAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVT 122
             SAGL A ALAKR  GLD+ F+P ++YARGCYF+L+  K  PF  L+YPIPE+GGLGVHVT
Sbjct:   306 SAGLGAQALAKRLHGLDHRFVPSSHYARGCYFTLSGIKAPPFNKLVYPIPEEGGLGVHVT 365

Query:   123 LDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPS 182
             +DL+G +KFGPDVEWI+  DDT SFLN+FDY VN  R+E+FYPEIRKYYPDL+DGSL+P 
Sbjct:   366 VDLNGLVKFGPDVEWIECTDDTSSFLNKFDYRVNPQRSEKFYPEIRKYYPDLKDGSLEPG 425

Query:   183 YAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFLR 240
             Y+GIRPKLSGP+QSP DFVIQG++THGVPGLVNLFGIESPGLTSS+AIAE++A KFLR
Sbjct:   426 YSGIRPKLSGPKQSPADFVIQGEETHGVPGLVNLFGIESPGLTSSLAIAEHIANKFLR 483

GO:0005739 "mitochondrion" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

CGD|CAL0000481 orf19.6238 [Candida albicans (taxid:5476)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 84/233 (36%), Positives = 120/233 (51%)

Query:    10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWD-GVSPLQPELTLIPKLVVNSAGLSA 68
             H   F NN   IG + E   +  Y   +K   N+   +     E+ L    VVN+AGL A
Sbjct:   175 HQARFENNNGTIGLNTELTDLE-Y---NKGTSNYTLRLESDAGEMELTSDNVVNAAGLYA 230

Query:    69 PALAKRFIGLDNVFIPPAYYARGCYFSLA-NTKVAPFKH-LIYPIPEDGG--LGVHVTLD 124
               ++   +  +  +    Y+A+G YFS +  T +      LIYP P      LG H+T D
Sbjct:   231 AQVSNLLLPKERHY--QGYFAKGNYFSYSPTTSIGKITDVLIYPCPNPNASSLGTHLTFD 288

Query:   125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
             L GQ++FGPD+EW+D     +      DY+ N    +  Y  I+ Y+P +   SL PSY+
Sbjct:   289 LGGQLRFGPDLEWLD-----IKRAEDIDYTPNPQNLKEAYKAIKTYFPSITPDSLHPSYS 343

Query:   185 GIRPKLSGPRQSP---IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234
             G+RPK+    ++     DF I+ +   G PG VNL G+ESPGLT+S AI EYV
Sbjct:   344 GVRPKIYSLEENMKKFADFEIKQEP--GYPGFVNLLGMESPGLTASWAIGEYV 394

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AB11 CaO19.6238 "Potential FAD-dependent oxidoreductase" [Candida albicans SC5314 (taxid:237561)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 84/233 (36%), Positives = 120/233 (51%)

Query:    10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWD-GVSPLQPELTLIPKLVVNSAGLSA 68
             H   F NN   IG + E   +  Y   +K   N+   +     E+ L    VVN+AGL A
Sbjct:   175 HQARFENNNGTIGLNTELTDLE-Y---NKGTSNYTLRLESDAGEMELTSDNVVNAAGLYA 230

Query:    69 PALAKRFIGLDNVFIPPAYYARGCYFSLA-NTKVAPFKH-LIYPIPEDGG--LGVHVTLD 124
               ++   +  +  +    Y+A+G YFS +  T +      LIYP P      LG H+T D
Sbjct:   231 AQVSNLLLPKERHY--QGYFAKGNYFSYSPTTSIGKITDVLIYPCPNPNASSLGTHLTFD 288

Query:   125 LDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYA 184
             L GQ++FGPD+EW+D     +      DY+ N    +  Y  I+ Y+P +   SL PSY+
Sbjct:   289 LGGQLRFGPDLEWLD-----IKRAEDIDYTPNPQNLKEAYKAIKTYFPSITPDSLHPSYS 343

Query:   185 GIRPKLSGPRQSP---IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV 234
             G+RPK+    ++     DF I+ +   G PG VNL G+ESPGLT+S AI EYV
Sbjct:   344 GVRPKIYSLEENMKKFADFEIKQEP--GYPGFVNLLGMESPGLTASWAIGEYV 394

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|P37339 lhgO [Escherichia coli K-12 (taxid:83333)]

 Score = 115 (45.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 31/77 (40%), Positives = 43/77 (55%)

Query:    60 VVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGG--L 117
             +++ +GL A  L K  +GL+  FI   +  RG YF LA        HLIYPIP+     L
Sbjct:   196 LISCSGLMADRLVK-MLGLEPGFIICPF--RGEYFRLAPEHNQIVNHLIYPIPDPAMPFL 252

Query:   118 GVHVTLDLDGQIKFGPD 134
             GVH+T  +DG +  GP+
Sbjct:   253 GVHLTRMIDGSVTVGPN 269

GO:0034419 "L-2-hydroxyglutarate oxidase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0052854 "medium-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0052853 "long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity" evidence=IEA

GO:0052852 "very-long-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q9KN19 VC_A0147 "Transcriptional regulator, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 111 (44.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query:    58 KLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG-- 115
             K +V  +GL A  L K  +GL   F    Y  RG Y+ LA       +HLIYPIP+    
Sbjct:   198 KFLVTCSGLMADRLTK-MLGLPTDFQIIPY--RGEYYRLAPKHNQVVRHLIYPIPDPELP 254

Query:   116 GLGVHVTLDLDGQIKFGPD 134
              LGVH+T  +DG +  GP+
Sbjct:   255 FLGVHLTRMIDGCVTVGPN 273

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TIGR_CMR|VC_A0147 VC_A0147 "transcriptional regulator, putative" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 111 (44.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
 Identities = 32/79 (40%), Positives = 42/79 (53%)

Query:    58 KLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG-- 115
             K +V  +GL A  L K  +GL   F    Y  RG Y+ LA       +HLIYPIP+    
Sbjct:   198 KFLVTCSGLMADRLTK-MLGLPTDFQIIPY--RGEYYRLAPKHNQVVRHLIYPIPDPELP 254

Query:   116 GLGVHVTLDLDGQIKFGPD 134
              LGVH+T  +DG +  GP+
Sbjct:   255 FLGVHLTRMIDGCVTVGPN 273

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|Q4KDZ4 lhgO "L-2-hydroxyglutarate oxidase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 109 (43.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
 Identities = 32/80 (40%), Positives = 43/80 (53%)

Query:    58 KLVVNSAGLSAPALAKRF-IGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG- 115
             K +V  AGL +  LA    + +D+  IP     RG YF L  +K     HLIYPIP+   
Sbjct:   194 KKLVACAGLQSDRLAVMAGVKIDHQIIP----FRGEYFRLPASKNNIVNHLIYPIPDPEL 249

Query:   116 -GLGVHVTLDLDGQIKFGPD 134
               LGVH+T  +DG +  GP+
Sbjct:   250 PFLGVHLTRMIDGSVTVGPN 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83AP2 CBU_1839 "Aminobutyraldehyde dehydrogenase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query:   163 FYPEIRKYYPDLRDGSLQPSY-AGIRPKLSG--PRQSPIDFVIQGDDTHGVPGLVNLFGI 219
             F+ + +K    L+   L  +Y  G+RP+L     ++  +DFVI+ ++       +++   
Sbjct:   332 FFEDAKKLVKQLKREWLMQTYKVGLRPQLVNWQTKELMMDFVIERNEN-----TIHILNA 386

Query:   220 ESPGLTSSMAIAEYVAAKFL 239
              SP  TSSMA A+YV  +++
Sbjct:   387 ISPAFTSSMAFADYVIQRYV 406

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1839 CBU_1839 "FAD-dependent oxidoreductase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query:   163 FYPEIRKYYPDLRDGSLQPSY-AGIRPKLSG--PRQSPIDFVIQGDDTHGVPGLVNLFGI 219
             F+ + +K    L+   L  +Y  G+RP+L     ++  +DFVI+ ++       +++   
Sbjct:   332 FFEDAKKLVKQLKREWLMQTYKVGLRPQLVNWQTKELMMDFVIERNEN-----TIHILNA 386

Query:   220 ESPGLTSSMAIAEYVAAKFL 239
              SP  TSSMA A+YV  +++
Sbjct:   387 ISPAFTSSMAFADYVIQRYV 406

GO:0008150 "biological_process" evidence=ND

GO:0016491 "oxidoreductase activity" evidence=ISS

FB|FBgn0032729 CG10639 [Drosophila melanogaster (taxid:7227)]

 Score = 86 (35.3 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 30/88 (34%), Positives = 41/88 (46%)

Query:    50 QPELTLIPKLVVNSAGLSAPALAKRF-IGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI 108
             +P  T+  K V+   GL +  LA++     D   +P     RG Y  L   K    K  I
Sbjct:   233 KPGQTVRTKNVLTCGGLQSDLLAEKTGCPRDPRIVP----FRGEYLLLTKEKQHMVKGNI 288

Query:   109 YPIPEDGG--LGVHVTLDLDGQIKFGPD 134
             YP+P+     LGVH T  +DG I  GP+
Sbjct:   289 YPVPDPRFPFLGVHFTPRMDGSIWLGPN 316

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VI.2345.1	hypothetical protein (392 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.2059.13.1	annotation not avaliable (156 aa)	•								0.621
	fgenesh4_pm.C_scaffold_44000008	glycerol kinase (EC-2.7.1.30) (519 aa)	•								0.563
	gw1.2233.1.1	Predicted protein (347 aa)	•								0.416

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	7e-40
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	7e-16
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	1e-05

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score =  141 bits (358), Expect = 7e-40
 Identities = 76/238 (31%), Positives = 105/238 (44%), Gaps = 30/238 (12%)

Query: 4   QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 63
             EA+ +G     NT V G   + +   V++  + N            E TL  K V+N+
Sbjct: 160 AEEAQANGVELRLNTEVTGIEKQSD--GVFVLNTSN-----------GEETLEAKFVINA 206

Query: 64  AGLSAPALAKRFIGLDNVF-IPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVH 120
           AGL A  LA+   G+   F I P    RG Y  L N   A  +H IYP+P  G  GLGVH
Sbjct: 207 AGLYADPLAQM-AGIPEDFKIFPV---RGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVH 262

Query: 121 VTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDL-RDGSL 179
            T  +DG + FGP+               + D  V+ +  +       +  PDL    ++
Sbjct: 263 HTPTIDGSLLFGPNALDS-------PKFLKGDRGVDFDLLDSVRKANSRGMPDLGIKNNV 315

Query: 180 QPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237
             +YAGIRP L  PR   +DF+I           +N+ GI S GLT+  AIA  V   
Sbjct: 316 LANYAGIRPILKEPRLPALDFIIPEA--KDEDWFINVAGIRSQGLTADPAIAGGVLEL 371

Length = 429

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 75.2 bits (186), Expect = 7e-16
 Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 39/209 (18%)

Query: 58  KLVVNSAGLSAPALAKRFIGLD-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG- 115
           + ++N AGL +  LA +  GL+ +  I P    RG Y+ LA  K     HLIYP+P+   
Sbjct: 194 RTLINCAGLMSDRLA-KMAGLEPDFRIVPF---RGEYYRLAPEKNQLVNHLIYPVPDPAF 249

Query: 116 -GLGVHVTLDLDGQIKFGP--------------DVEWIDGIDDTLSF-------LNRFDY 153
             LGVH+T  +DG +  GP              D    D + + L++          +  
Sbjct: 250 PFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRD-LLEILTYPGFWKLAQKHWRS 308

Query: 154 SV----NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPI-DFVIQGDDTH 208
            +    N+     +   ++KY P L    LQP  AG+R +        + DF+       
Sbjct: 309 GLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLF-----V 363

Query: 209 GVPGLVNLFGIESPGLTSSMAIAEYVAAK 237
             P  +++    SP  TSS+ I E++ +K
Sbjct: 364 ETPRSLHVCNAPSPAATSSLPIGEHIVSK 392

Length = 393

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 37/177 (20%), Positives = 58/177 (32%), Gaps = 18/177 (10%)

Query: 60  VVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGV 119
           VV +AG  A  LA     L      P    RG   +    +      L   +      G 
Sbjct: 204 VVLAAGAWAGELAATLGELPL----PLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGG 259

Query: 120 HVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSL 179
           ++    DG+++ G   E         S   R D  +            R   P L D  +
Sbjct: 260 YIRPRGDGRLRVGGTDEEGGDDP---SDPEREDLVIAELLRV-----ARALLPGLADAGI 311

Query: 180 QPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 236
           + ++AG+RP  + P   P+           +P L    G    G T + A+   +A 
Sbjct: 312 EAAWAGLRP-PTTPDGLPV-----IGRAAPLPNLYVATGHGGHGFTLAPALGRLLAD 362

Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.96
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	99.96
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	99.95
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	99.94
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.94
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.94
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.94
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.93
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.93
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.93
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.93
COG0579	429	Predicted dehydrogenase [General function predicti	99.93
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.92
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.92
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.92
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.91
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.91
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.91
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	99.91
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.91
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.89
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.89
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.86
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.85
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.85
KOG2853	509	consensus Possible oxidoreductase [General functio	99.84
PRK05257	494	malate:quinone oxidoreductase; Validated	99.81
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.79
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	99.78
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	99.64
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.52
KOG2852	380	consensus Possible oxidoreductase [General functio	99.31
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.69
PLN02697	529	lycopene epsilon cyclase	98.45
PRK06185	407	hypothetical protein; Provisional	98.41
PRK10157	428	putative oxidoreductase FixC; Provisional	98.38
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.34
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.23
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.14
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.13
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.11
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.09
PRK10015	429	oxidoreductase; Provisional	98.06
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.05
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	97.97
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.97
PLN02463	447	lycopene beta cyclase	97.95
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.93
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.86
PRK07233	434	hypothetical protein; Provisional	97.72
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.7
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.65
PLN02612	567	phytoene desaturase	97.62
PRK08244	493	hypothetical protein; Provisional	97.62
PRK06834	488	hypothetical protein; Provisional	97.58
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.54
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.53
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.52
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.5
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.5
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.49
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.42
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	97.42
COG2081	408	Predicted flavoproteins [General function predicti	97.39
PRK09126	392	hypothetical protein; Provisional	97.39
PRK11445	351	putative oxidoreductase; Provisional	97.35
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.32
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.29
PRK06847	375	hypothetical protein; Provisional	97.27
PRK06184	502	hypothetical protein; Provisional	97.24
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.2
PRK06126	545	hypothetical protein; Provisional	97.16
PRK07190	487	hypothetical protein; Provisional	97.14
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.1
PRK08013	400	oxidoreductase; Provisional	97.07
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.02
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.0
PRK08274	466	tricarballylate dehydrogenase; Validated	96.94
PRK08163	396	salicylate hydroxylase; Provisional	96.91
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.9
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.84
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.82
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	96.72
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	96.72
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.71
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	96.71
PLN02487	569	zeta-carotene desaturase	96.71
PRK12842	574	putative succinate dehydrogenase; Reviewed	96.69
PRK07121	492	hypothetical protein; Validated	96.67
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.67
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.62
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.61
PRK07588	391	hypothetical protein; Provisional	96.61
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	96.53
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.53
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.47
PRK07045	388	putative monooxygenase; Reviewed	96.44
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.42
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.42
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	96.41
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	96.39
PRK12839	572	hypothetical protein; Provisional	96.36
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.36
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	96.32
PRK09897	534	hypothetical protein; Provisional	96.28
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.25
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.25
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.23
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.17
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	96.17
PRK06996	398	hypothetical protein; Provisional	96.16
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	96.08
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.08
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	96.05
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	96.05
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	96.04
PRK08401	466	L-aspartate oxidase; Provisional	96.0
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	95.99
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.97
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	95.95
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	95.93
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	95.91
PRK07512	513	L-aspartate oxidase; Provisional	95.89
PRK06175	433	L-aspartate oxidase; Provisional	95.88
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	95.86
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	95.82
PRK14727	479	putative mercuric reductase; Provisional	95.8
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	95.75
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	95.75
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.71
PRK05868	372	hypothetical protein; Validated	95.69
PRK08071	510	L-aspartate oxidase; Provisional	95.64
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	95.63
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	95.62
PRK08275	554	putative oxidoreductase; Provisional	95.59
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.57
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	95.53
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	95.53
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	95.52
PRK09564	444	coenzyme A disulfide reductase; Reviewed	95.51
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	95.46
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.45
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.44
PLN02268	435	probable polyamine oxidase	95.27
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	95.22
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	95.2
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	95.19
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.18
PRK14694	468	putative mercuric reductase; Provisional	95.14
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	95.11
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	95.1
PRK06116	450	glutathione reductase; Validated	95.08
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	95.06
PRK07804	541	L-aspartate oxidase; Provisional	95.05
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	95.04
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	94.92
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	94.87
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	94.83
PLN02676	487	polyamine oxidase	94.76
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	94.69
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.66
PRK06753	373	hypothetical protein; Provisional	94.64
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.64
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.63
PRK07538	413	hypothetical protein; Provisional	94.62
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	94.61
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.61
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	94.6
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	94.59
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	94.56
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.47
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	94.45
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	94.45
PRK13748	561	putative mercuric reductase; Provisional	94.44
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	94.37
PRK11883	451	protoporphyrinogen oxidase; Reviewed	94.37
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.34
PRK07208	479	hypothetical protein; Provisional	94.34
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.24
PLN02507	499	glutathione reductase	94.24
PRK06475	400	salicylate hydroxylase; Provisional	94.2
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	94.01
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	93.93
PRK13977	576	myosin-cross-reactive antigen; Provisional	93.92
PRK07395	553	L-aspartate oxidase; Provisional	93.76
PRK07236	386	hypothetical protein; Provisional	93.74
PRK07845	466	flavoprotein disulfide reductase; Reviewed	93.66
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	93.65
PRK09077	536	L-aspartate oxidase; Provisional	93.59
PRK02106	560	choline dehydrogenase; Validated	93.56
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	93.34
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	93.3
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	93.26
TIGR02053	463	MerA mercuric reductase. This model represents the	93.09
PRK13512	438	coenzyme A disulfide reductase; Provisional	93.07
PRK10262	321	thioredoxin reductase; Provisional	93.03
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	92.96
PLN02815	594	L-aspartate oxidase	92.94
PRK06370	463	mercuric reductase; Validated	92.8
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	92.76
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	92.47
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	92.31
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	92.26
PRK07846	451	mycothione reductase; Reviewed	92.22
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	92.2
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	92.16
PLN02529	738	lysine-specific histone demethylase 1	92.15
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	92.06
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	91.96
PLN02568	539	polyamine oxidase	91.91
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	91.85
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	91.8
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	91.72
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	91.71
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	91.68
PTZ00052	499	thioredoxin reductase; Provisional	91.63
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	91.57
PRK09564	444	coenzyme A disulfide reductase; Reviewed	91.5
PLN02576	496	protoporphyrinogen oxidase	91.48
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	91.29
PLN02985	514	squalene monooxygenase	91.27
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	91.19
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	91.13
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	91.11
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	91.03
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	90.95
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	90.63
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	90.55
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	90.54
PLN02661	357	Putative thiazole synthesis	90.5
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	90.16
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	89.88
PRK08294	634	phenol 2-monooxygenase; Provisional	89.8
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	89.44
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	89.35
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	89.19
PRK14989	847	nitrite reductase subunit NirD; Provisional	89.11
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	88.92
PLN03000	881	amine oxidase	88.9
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	88.84
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	88.83
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	88.78
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	88.72
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	88.62
PTZ00058	561	glutathione reductase; Provisional	88.27
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	88.2
PRK14989	847	nitrite reductase subunit NirD; Provisional	88.08
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	87.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	87.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	87.52
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	87.28
PRK10262	321	thioredoxin reductase; Provisional	87.19
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	87.17
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	87.16
PLN02546	558	glutathione reductase	86.99
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	86.71
PLN02328	808	lysine-specific histone demethylase 1 homolog	86.6
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	86.53
PRK13512	438	coenzyme A disulfide reductase; Provisional	86.24
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	84.35
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	82.85
PLN02976	1713	amine oxidase	82.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	81.82
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	81.77
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	81.27
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	81.24

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.96  E-value=9.6e-28  Score=214.85  Aligned_cols=212  Identities=27%  Similarity=0.346  Sum_probs=161.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcC-CCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG-LDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~-~~~   80 (240)
                      +|.+.++++|++++++++|++++..++++.|+++++                ++.||.||+|+|.|+..++++++. .++
T Consensus       154 aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g----------------~i~ad~vV~A~G~~s~~l~~~~g~~~~~  217 (393)
T PRK11728        154 AMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG----------------EYEARTLINCAGLMSDRLAKMAGLEPDF  217 (393)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC----------------EEEeCEEEECCCcchHHHHHHhCCCCCC
Confidence            577888999999999999999988888888888776                799999999999999999998832 235


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeecCCcEEEcCCccccCCcc--cc-----cccc---
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPDVEWIDGID--DT-----LSFL---  148 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~~g~~~~G~~~~~~~~~~--~~-----~~~~---  148 (240)
                      ++.|    +||+++.+++.....+++.+||+|+..  +.++|++|+.+|++++|+++......+  +.     .++.   
T Consensus       218 ~v~p----~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~  293 (393)
T PRK11728        218 RIVP----FRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEIL  293 (393)
T ss_pred             ceEE----eeeEEEEeccccccccCCceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHH
Confidence            5566    999999998653445677889888754  467899999999999998654322100  00     0000   


Q ss_pred             --ccccc---ccchhhHHHH---------HHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCCCCCE
Q 026314          149 --NRFDY---SVNANRAERF---------YPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGL  213 (240)
Q Consensus       149 --~~~~~---~~~~~~~~~~---------~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~~~~~  213 (240)
                        +....   ..+.+.++.+         ++.+++++|.|...++.+.|+|+||....+ +.|-.||+|...     +++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~-----~~~  368 (393)
T PRK11728        294 TYPGFWKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVET-----PRS  368 (393)
T ss_pred             hccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecC-----CCE
Confidence              00000   0023334444         699999999999999999999999954333 456689988653     589


Q ss_pred             EEEeCCCCchHhhhHHHHHHHHHHH
Q 026314          214 VNLFGIESPGLTSSMAIAEYVAAKF  238 (240)
Q Consensus       214 ~~~~G~~~~G~t~ap~~g~~va~~i  238 (240)
                      +++.|..|||+|.||+||+.|++++
T Consensus       369 ~~~~~~~spg~t~s~~ia~~v~~~~  393 (393)
T PRK11728        369 LHVCNAPSPAATSSLPIGEHIVSKV  393 (393)
T ss_pred             EEEcCCCCchHHccHHHHHHHHhhC
Confidence            9999999999999999999999874

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=99.96  E-value=7.2e-28  Score=210.33  Aligned_cols=192  Identities=21%  Similarity=0.224  Sum_probs=154.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|++.|+++|++|+++++|++++..+++|. |.|++|                +++||.||||+|+|+..|.+      +
T Consensus       142 ~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g----------------~~~a~~vV~a~G~~~~~l~~------~  199 (337)
T TIGR02352       142 ALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG----------------DVQADQVVLAAGAWAGELLP------L  199 (337)
T ss_pred             HHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC----------------EEECCEEEEcCChhhhhccc------C
Confidence            578899999999999999999998888775 888877                89999999999999998754      3


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++.|    .+|+++.++++.....+..+....  .....+++|..+|++++|++....           .++...+.+.+
T Consensus       200 ~~~~----~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~p~~~g~~~iG~~~~~~-----------~~~~~~~~~~~  262 (337)
T TIGR02352       200 PLRP----VRGQPLRLEAPAVPLLNRPLRAVV--YGRRVYIVPRRDGRLVVGATMEES-----------GFDTTPTLGGI  262 (337)
T ss_pred             Cccc----cCceEEEeeccccccCCcccceEE--EcCCEEEEEcCCCeEEEEEecccc-----------CccCCCCHHHH
Confidence            4567    999999987542111111110000  123367888888889999765432           23445567789


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +.+.+.+.++||.|+..++.+.|+|+||+     ++|+.|+||..+  ..+|+|+++|++|+|++++|++|+.+|++|+
T Consensus       263 ~~l~~~~~~~~P~l~~~~~~~~~~g~r~~-----t~D~~piig~~~--~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~  334 (337)
T TIGR02352       263 KELLRDAYTILPALKEARLLETWAGLRPG-----TPDNLPYIGEHP--EDRRLLIATGHYRNGILLAPATAEVIADLIL  334 (337)
T ss_pred             HHHHHHHHHhCCCcccCcHHHheecCCCC-----CCCCCCEeCccC--CCCCEEEEcccccCceehhhHHHHHHHHHHh
Confidence            99999999999999999999999999998     578899999987  6789999999999999999999999999986

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=99.95  E-value=6.2e-27  Score=208.77  Aligned_cols=190  Identities=22%  Similarity=0.207  Sum_probs=153.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|++++++ |++|+++++|++|+.++++|.|+|++|.               .++||+||+|+|+|+..|.+++   +++
T Consensus       140 ~l~~~~~~-G~~i~~~~~V~~i~~~~~~~~v~t~~g~---------------~~~a~~vV~a~G~~~~~l~~~~---~~p  200 (381)
T TIGR03197       140 ALLAHAGI-RLTLHFNTEITSLERDGEGWQLLDANGE---------------VIAASVVVLANGAQAGQLAQTA---HLP  200 (381)
T ss_pred             HHHhccCC-CcEEEeCCEEEEEEEcCCeEEEEeCCCC---------------EEEcCEEEEcCCcccccccccc---cCC
Confidence            57778888 9999999999999988888999998872               4899999999999999988764   566


Q ss_pred             cCCCceeeceeEEEEcCCCC-CCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           82 FIPPAYYARGCYFSLANTKV-APFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      +.|    .||+++.+++... ...+..+       ....|++|..+|++++|.+.+..           ..+...+.+.+
T Consensus       201 i~p----~rg~~~~~~~~~~~~~~~~~~-------~~~~y~~p~~~g~~~iG~t~~~~-----------~~~~~~~~~~~  258 (381)
T TIGR03197       201 LRP----VRGQVSHLPATEALSALKTVL-------CYDGYLTPANNGEHCIGASYDRN-----------DDDLALREADH  258 (381)
T ss_pred             ccc----cccceeeccCCCcccccCceE-------eCCceecccCCCceEeecccCCC-----------CCCCCcCHHHH
Confidence            677    9999999875321 1111111       11247888888899999765432           22344566778


Q ss_pred             HHHHHHHhhhCCCCC-----CCCccccccccCCeecCCCCCCCCeEEecCCCCC-------------------------C
Q 026314          161 ERFYPEIRKYYPDLR-----DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG-------------------------V  210 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~-----~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~-------------------------~  210 (240)
                      +.+++.+.++||.+.     +.++.+.|+|+||.     ++|+.|+||..+  +                         .
T Consensus       259 ~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~-----t~D~~Piig~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (381)
T TIGR03197       259 AENLERLAECLPALAWASEVDISALQGRVGVRCA-----SPDHLPLVGAVP--DFEAIKEAYAELAKDKNRPIAEPAPYY  331 (381)
T ss_pred             HHHHHHHHHhCcccchhhccCccccCceEEEecc-----CCCcCccCCCCC--CHHHHHHHHHHhcccccccccccCCCC
Confidence            899999999999997     78899999999998     678889999987  5                         7


Q ss_pred             CCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          211 PGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       211 ~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +|+|+++|++|+||+++|++|+++|++|.
T Consensus       332 ~g~~~a~G~~g~G~~~ap~~g~~la~~i~  360 (381)
T TIGR03197       332 PGLYVLGGLGSRGLTSAPLAAEILAAQIC  360 (381)
T ss_pred             CCeEEEecccchHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999985

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=99.94  E-value=8.7e-26  Score=208.89  Aligned_cols=206  Identities=23%  Similarity=0.306  Sum_probs=155.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      ++++.|+++||+|+++++|++|++.++++. |++.+..          ++++.+|+|++||||||+|++.|++++ +.++
T Consensus       133 al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~----------~g~~~~i~a~~VVnAaG~wa~~l~~~~-g~~~  201 (516)
T TIGR03377       133 ANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHK----------TGEEERIEAQVVINAAGIWAGRIAEYA-GLDI  201 (516)
T ss_pred             HHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcC----------CCcEEEEEcCEEEECCCcchHHHHHhc-CCCC
Confidence            678999999999999999999999888753 5543210          122447999999999999999999998 5577


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++.|    .||++++++....   +..+..++.. ..+.+++|. ++.+++|++.+..++         ..+..++.+++
T Consensus       202 ~i~p----~kG~~lv~~~~~~---~~~~~~~~~~-~~g~~~~P~-~~~~liGtT~~~~~~---------~~~~~~~~~~v  263 (516)
T TIGR03377       202 RMFP----AKGALLIMNHRIN---NTVINRCRKP-SDADILVPG-DTISIIGTTSERIDD---------PDDLPVTQEEV  263 (516)
T ss_pred             ceec----ceEEEEEECCccc---ccccccccCC-CCCcEEEEC-CCeEEEecCCCCCCC---------CCCCCCCHHHH
Confidence            7777    9999999975321   1222222222 233467784 778999998765432         44566788999


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCC-----CCCCCeE-EecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPR-----QSPIDFV-IQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~-----~~~~~~i-i~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                      +++++.+.++||.|...++.++|+|+||.+.++.     ...++|. ++....++.+|+++++|..   +|++++||+.+
T Consensus       264 ~~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~GGk---ltt~r~~Ae~~  340 (516)
T TIGR03377       264 DVLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITGGK---LTTYRLMAEWA  340 (516)
T ss_pred             HHHHHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEecch---HHHHHHHHHHH
Confidence            9999999999999999999999999999875421     1234664 5643222689999999854   99999999999


Q ss_pred             HHHHh
Q 026314          235 AAKFL  239 (240)
Q Consensus       235 a~~i~  239 (240)
                      ++++.
T Consensus       341 ~d~~~  345 (516)
T TIGR03377       341 TDVVC  345 (516)
T ss_pred             HHHHH
Confidence            99875

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.94  E-value=7.1e-26  Score=203.79  Aligned_cols=194  Identities=21%  Similarity=0.265  Sum_probs=150.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|++.++++|++|+++++|++++..++++. |+|+++                +++||+||+|+|.|+..+++++ +.++
T Consensus       206 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~----------------~~~a~~VV~a~G~~~~~l~~~~-g~~~  268 (416)
T PRK00711        206 RLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG----------------VITADAYVVALGSYSTALLKPL-GVDI  268 (416)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc----------------EEeCCEEEECCCcchHHHHHHh-CCCc
Confidence            577889999999999999999998888764 888766                7999999999999999999887 5677


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++.|    ++|+.+.++.....  ...+..+.+. ... +..+..+|++++|+..+..           .++...+.+..
T Consensus       269 pi~p----~rg~~~~~~~~~~~--~~p~~~~~~~-~~~-~~~~~~~~~~~iG~~~~~~-----------~~~~~~~~~~~  329 (416)
T PRK00711        269 PVYP----LKGYSLTVPITDED--RAPVSTVLDE-TYK-IAITRFDDRIRVGGMAEIV-----------GFDLRLDPARR  329 (416)
T ss_pred             ccCC----ccceEEEEecCCCC--CCCceeEEec-ccC-EEEeecCCceEEEEEEEec-----------CCCCCCCHHHH
Confidence            7777    99988766432111  1111111111 111 2334457889998754322           23344566678


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +.+.+.+.++||.+.+..+.+.|+|+|+.     ++|+.|+||..+   .+|+|+++|++|+||++||++|+++|++|+
T Consensus       330 ~~l~~~~~~~~P~l~~~~~~~~w~G~r~~-----t~D~~PiIG~~~---~~gl~~a~G~~g~G~~~ap~~g~~la~li~  400 (416)
T PRK00711        330 ETLEMVVRDLFPGGGDLSQATFWTGLRPM-----TPDGTPIVGATR---YKNLWLNTGHGTLGWTMACGSGQLLADLIS  400 (416)
T ss_pred             HHHHHHHHHHCCCcccccccceeeccCCC-----CCCCCCEeCCcC---CCCEEEecCCchhhhhhhhhHHHHHHHHHc
Confidence            88899999999999998999999999998     678889999875   489999999999999999999999999985

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.94  E-value=2.1e-25  Score=200.48  Aligned_cols=194  Identities=15%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~   79 (240)
                      +|++.|+++|++++++++|++++.. ++++ .|+|++|                ++.|++||+|||+|+..+.+++ +.+
T Consensus       188 ~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g----------------~i~a~~vVvaagg~~~~l~~~~-g~~  250 (407)
T TIGR01373       188 GYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG----------------FIGAKKVGVAVAGHSSVVAAMA-GFR  250 (407)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc----------------eEECCEEEECCChhhHHHHHHc-CCC
Confidence            5788999999999999999999765 4555 4888888                8999999999999999999988 556


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +++.|    .+++++++++.. ...+..+..    ....+|++|..+|++++|...+...          .++...+.+.
T Consensus       251 ~~~~~----~~~~~~~~~~~~-~~~~~~~~~----~~~~~y~~p~~~g~~~ig~~~~~~~----------~~~~~~~~~~  311 (407)
T TIGR01373       251 LPIES----HPLQALVSEPLK-PIIDTVVMS----NAVHFYVSQSDKGELVIGGGIDGYN----------SYAQRGNLPT  311 (407)
T ss_pred             CCcCc----ccceEEEecCCC-CCcCCeEEe----CCCceEEEEcCCceEEEecCCCCCC----------ccCcCCCHHH
Confidence            66666    788887766431 112222211    1234688888888999997542111          2223345667


Q ss_pred             HHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          160 AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       160 ~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      .+.+++.+.++||.|+...+.+.|+|+||+     ++|+.|+||..+   .+|+|+++|++|+|+++||++|+++|++|+
T Consensus       312 ~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~-----t~D~~PiIg~~~---~~gl~~a~G~~g~G~~~ap~~G~~la~li~  383 (407)
T TIGR01373       312 LEHVLAAILEMFPILSRVRMLRSWGGIVDV-----TPDGSPIIGKTP---LPNLYLNCGWGTGGFKATPASGTVFAHTLA  383 (407)
T ss_pred             HHHHHHHHHHhCCCcCCCCeEEEecccccc-----CCCCCceeCCCC---CCCeEEEeccCCcchhhchHHHHHHHHHHh
Confidence            889999999999999998999999999998     688899999986   489999999999999999999999999985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.94  E-value=4.4e-25  Score=198.55  Aligned_cols=202  Identities=20%  Similarity=0.244  Sum_probs=147.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|++.|+++|++|+++++|++|+..++.|.+.+.++..          .+..+++||+||||+|+|+..|++++ +.+++
T Consensus       202 ~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~----------~~~~~i~a~~vV~a~G~~s~~l~~~~-~~~~~  270 (410)
T PRK12409        202 GLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAE----------HPSRTLEFDGVVVCAGVGSRALAAML-GDRVN  270 (410)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCC----------CccceEecCEEEECCCcChHHHHHHh-CCCCc
Confidence            57889999999999999999999888877765433210          00126999999999999999999988 55667


Q ss_pred             cCCCceeeceeEEEEcCCCCCC-ccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           82 FIPPAYYARGCYFSLANTKVAP-FKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~-~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      +.|    .+|++++++...... .....+.+.+.... +...+...+++++|++.+..           .++..++.+.+
T Consensus       271 i~p----~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~igg~~~~~-----------~~~~~~~~~~~  334 (410)
T PRK12409        271 VYP----VKGYSITVNLDDEASRAAAPWVSLLDDSAK-IVTSRLGADRFRVAGTAEFN-----------GYNRDIRADRI  334 (410)
T ss_pred             ccc----CCceEEEeecCCccccccCCceeeeecCCc-EEEEecCCCcEEEEEEEEec-----------CCCCCCCHHHH
Confidence            777    999998775321110 00011111111111 22223335678888764432           23444566788


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +.+++.+.++||.|++..+. .|+|+|++     ++|+.|+||..+   .+|+|+++|++|+||++||++|+++|++|.
T Consensus       335 ~~l~~~~~~~~P~l~~~~~~-~w~G~r~~-----t~D~~PiiG~~~---~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~  404 (410)
T PRK12409        335 RPLVDWVRRNFPDVSTRRVV-PWAGLRPM-----MPNMMPRVGRGR---RPGVFYNTGHGHLGWTLSAATADLVAQVVA  404 (410)
T ss_pred             HHHHHHHHHhCCCCCccccc-eecccCCC-----CCCCCCeeCCCC---CCCEEEecCCcccchhhcccHHHHHHHHHc
Confidence            99999999999999887766 69999998     678889999864   589999999999999999999999999985

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.93  E-value=8.6e-25  Score=194.11  Aligned_cols=198  Identities=19%  Similarity=0.206  Sum_probs=150.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      ++.+.+.++|++|+++++|++++..++++.|+|++|                ++.||+||+|+|.|+..|+.++   .++
T Consensus       154 ~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----------------~~~a~~vV~A~G~~~~~l~~~~---~~~  214 (376)
T PRK11259        154 AHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG----------------TYEAKKLVVSAGAWVKDLLPPL---ELP  214 (376)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC----------------EEEeeEEEEecCcchhhhcccc---cCC
Confidence            456778889999999999999999888888999887                7999999999999999988764   455


Q ss_pred             cCCCceeeceeEEEEcCCCCC--Cccce--eecCCCCCCCeeEEEeecCCc-EEEcCCccccC--Ccccccccccccccc
Q 026314           82 FIPPAYYARGCYFSLANTKVA--PFKHL--IYPIPEDGGLGVHVTLDLDGQ-IKFGPDVEWID--GIDDTLSFLNRFDYS  154 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~--~~~~~--i~~~p~~~~~~~~~~~~~~g~-~~~G~~~~~~~--~~~~~~~~~~~~~~~  154 (240)
                      +.|    .+++++.+++....  ..+..  +...++  ...+|++|..+++ +++|.+.....  .+.+      .....
T Consensus       215 i~~----~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~y~~p~~~~~~l~ig~~~~~~~~~~~~~------~~~~~  282 (376)
T PRK11259        215 LTP----VRQVLAWFQADGRYSEPNRFPAFIWEVPD--GDQYYGFPAENGPGLKIGKHNGGQEITSPDE------RDRFV  282 (376)
T ss_pred             ceE----EEEEEEEEecCCccCCccCCCEEEEecCC--CceeEeccCCCCCceEEEECCCCCCCCChhh------ccCCC
Confidence            566    99999988753210  11111  111121  2235677877787 99987653110  1100      11112


Q ss_pred             cchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          155 VNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       155 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                      ...+..+.+.+.+.++||.+..  +.+.|+|+|+.     +||+.|+||..+  +.+|+|+++|++|+|+|++|++|+++
T Consensus       283 ~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~-----t~D~~P~ig~~~--~~~gl~~~~G~~g~G~~~ap~~g~~l  353 (376)
T PRK11259        283 TVAEDGAELRPFLRNYLPGVGP--CLRGAACTYTN-----TPDEHFIIDTLP--GHPNVLVASGCSGHGFKFASVLGEIL  353 (376)
T ss_pred             CcHHHHHHHHHHHHHHCCCCCc--cccceEEeccc-----CCCCCceeecCC--CCCCEEEEecccchhhhccHHHHHHH
Confidence            2245688999999999998876  78889999997     688899999988  68999999999999999999999999


Q ss_pred             HHHHh
Q 026314          235 AAKFL  239 (240)
Q Consensus       235 a~~i~  239 (240)
                      |++|+
T Consensus       354 a~li~  358 (376)
T PRK11259        354 ADLAQ  358 (376)
T ss_pred             HHHHh
Confidence            99986

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.93  E-value=3e-24  Score=199.65  Aligned_cols=208  Identities=20%  Similarity=0.256  Sum_probs=153.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      ++++.|+++|++|+++++|++|.++++++. |++.+..          .+++.+|+|++||||||+|++.|++++ +.++
T Consensus       154 al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~----------~g~~~~i~A~~VVnAaG~wa~~l~~~~-g~~~  222 (546)
T PRK11101        154 ANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHL----------TGETQEIHAPVVVNAAGIWGQHIAEYA-DLRI  222 (546)
T ss_pred             HHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcC----------CCcEEEEECCEEEECCChhHHHHHHhc-CCCC
Confidence            577899999999999999999998887654 5543211          112347999999999999999999988 5677


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++.|    .||++++++....   ...+++++.+... .++.| .++.+++|++.+.... +|      ..+..++.+.+
T Consensus       223 ~i~p----~kG~~lv~~~~~~---~~vi~~~~~~~~~-~~~vp-~~~~~liGtT~~~~~~-~~------~~~~~~t~~~i  286 (546)
T PRK11101        223 RMFP----AKGSLLIMDHRIN---NHVINRCRKPADA-DILVP-GDTISLIGTTSTRIDY-DQ------IDDNRVTAEEV  286 (546)
T ss_pred             ceee----cceEEEEECCccC---ceeEeccCCCCCC-CEEEe-cCCEEEEeeCCCCccC-CC------cCCCCCCHHHH
Confidence            7777    9999999975321   2234433322222 24556 4667899988754321 00      34567788999


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCC-----CC-CeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQS-----PI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~-----~~-~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                      +++++.+.+++|.|...++.+.|+|+||.+.....+     .+ +++++..+.++.+|+++++|..   +|+++++|+.+
T Consensus       287 ~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli~i~GGk---ltt~r~~Ae~v  363 (546)
T PRK11101        287 DILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGK---LMTYRLMAEWA  363 (546)
T ss_pred             HHHHHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeEEEECCh---HHHHHHHHHHH
Confidence            999999999999999999999999999986432111     22 3567754322678999999854   99999999999


Q ss_pred             HHHHh
Q 026314          235 AAKFL  239 (240)
Q Consensus       235 a~~i~  239 (240)
                      ++++.
T Consensus       364 ~d~v~  368 (546)
T PRK11101        364 TDAVC  368 (546)
T ss_pred             HHHHH
Confidence            99874

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.93  E-value=1.9e-24  Score=199.30  Aligned_cols=209  Identities=17%  Similarity=0.230  Sum_probs=157.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC--
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD--   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~--   79 (240)
                      +++..|+++|++|+++++|+++++.++.|.|++.++.           |++++|+|+.||||||+|++.|++++.+.+  
T Consensus       160 ~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~-----------g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~  228 (502)
T PRK13369        160 LNALDAAERGATILTRTRCVSARREGGLWRVETRDAD-----------GETRTVRARALVNAAGPWVTDVIHRVAGSNSS  228 (502)
T ss_pred             HHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCC-----------CCEEEEEecEEEECCCccHHHHHhhccCCCCC
Confidence            5678899999999999999999988887888776551           345679999999999999999988652222  


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ..+.|    .||++++++...... ...+++.+  .+.-+++.|..++.+++|++....++.        .++..+++++
T Consensus       229 ~~v~p----~kG~~lv~~~~~~~~-~~~~~~~~--dgr~~~i~P~~~~~~liGtTd~~~~~~--------~~~~~~~~~~  293 (502)
T PRK13369        229 RNVRL----VKGSHIVVPKFWDGA-QAYLFQNP--DKRVIFANPYEGDFTLIGTTDIAYEGD--------PEDVAADEEE  293 (502)
T ss_pred             cceEE----eeEEEEEeCCccCCC-ceEEEeCC--CCeEEEEEEecCCEEEEEecCccccCC--------CCCCCCCHHH
Confidence            34555    999999996432111 11223322  233357888867788999886543210        3567788999


Q ss_pred             HHHHHHHHhhhCC-CCCCCCccccccccCCeecCC-C---CCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          160 AERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP-R---QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       160 ~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~-~---~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                      ++++++.++++|| .|...++.+.|+|+||.+.+. .   ...++|.|..+..++.+|+++++|.   ++|++++||+.+
T Consensus       294 i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~i~Gg---k~Tt~r~~Ae~v  370 (502)
T PRK13369        294 IDYLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLSVFGG---KITTFRKLAEHA  370 (502)
T ss_pred             HHHHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEEEeCC---hHhhHHHHHHHH
Confidence            9999999999997 899999999999999998643 1   2247888765432256899999984   699999999999


Q ss_pred             HHHHh
Q 026314          235 AAKFL  239 (240)
Q Consensus       235 a~~i~  239 (240)
                      ++++.
T Consensus       371 ~d~~~  375 (502)
T PRK13369        371 LERLK  375 (502)
T ss_pred             HHHHH
Confidence            99875

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.93  E-value=1.2e-25  Score=196.57  Aligned_cols=203  Identities=24%  Similarity=0.245  Sum_probs=153.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|.+.++++|++|+++++|++|..++++|+ |.|++|                .++||+||||+|+|+..|++++ +.+.
T Consensus       152 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g----------------~i~ad~vV~a~G~~s~~l~~~~-~~~~  214 (358)
T PF01266_consen  152 ALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDG----------------EIRADRVVLAAGAWSPQLLPLL-GLDL  214 (358)
T ss_dssp             HHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTE----------------EEEECEEEE--GGGHHHHHHTT-TTSS
T ss_pred             hhHHHHHHhhhhccccccccchhhccccccccccccc----------------ccccceeEecccccceeeeecc-cccc
Confidence            678899999999999999999999999998 999998                7999999999999999999988 4555


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecC--CCCCCCeeEEEeecCCcEEEcCCcccc-CCcccccccccccccccch
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPI--PEDGGLGVHVTLDLDGQIKFGPDVEWI-DGIDDTLSFLNRFDYSVNA  157 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~--p~~~~~~~~~~~~~~g~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~  157 (240)
                      ++.|    .+++++.+++..... ...+...  ........+++|.. |.+++|+..... ....  .......+...+.
T Consensus       215 ~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~~~~~~~~--~~~~~~~~~~~~~  286 (358)
T PF01266_consen  215 PLRP----VRGQVLVLEPPESPL-APAILFPPVIFGPSDGVYIRPRP-GGVLIGTADGNYDPGPS--PEDSSGEDPDVDE  286 (358)
T ss_dssp             TEEE----EEEEEEEEEGCCSGS-SSEEEEEEECESSCTEEEEEEET-TEEEEEESECEEEESSS--HHHHSHHHHHHHH
T ss_pred             cccc----cceEEEEEccCCccc-ccccccccccccccccceecccc-ccccccccccccccccc--ccccccccccccH
Confidence            5556    999999998653222 2222211  11223557888887 889998432111 1000  0000011223344


Q ss_pred             hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314          158 NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  237 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~  237 (240)
                      + ++.+++.+.+++|.|...++.+.|+|+||.     ++|+.++|+..+  +.+|+|+++|++|+||++||++|+++||+
T Consensus       287 ~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~-----t~d~~p~ig~~~--~~~~l~~~~g~~~~G~~~a~~~a~~~a~~  358 (358)
T PF01266_consen  287 E-IDELLERLARLLPGLGDAEVVRSWAGIRPF-----TPDGRPIIGELP--GSPNLYLAGGHGGHGFTLAPGLAELLADL  358 (358)
T ss_dssp             H-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEE-----ETTSECEEEEES--SEEEEEEEECETTCHHHHHHHHHHHHHHH
T ss_pred             H-HHHhHHHHHHHHHHhhhccccccccceeee-----ccCCCeeeeecC--CCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            5 789999999999999999999999999999     477889999987  68999999999999999999999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.93  E-value=1.6e-24  Score=193.10  Aligned_cols=210  Identities=34%  Similarity=0.472  Sum_probs=176.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC-
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~-   79 (240)
                      +|++.|+++|++++++++|++|++.++++ .+.|.+|+             + +++|+.||||||.+|+.|++|++... 
T Consensus       158 ~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~-------------~-~~~ak~Vin~AGl~Ad~la~~~g~~~~  223 (429)
T COG0579         158 ALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGE-------------E-TLEAKFVINAAGLYADPLAQMAGIPED  223 (429)
T ss_pred             HHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCc-------------E-EEEeeEEEECCchhHHHHHHHhCCCcc
Confidence            68999999999999999999999998854 57787772             1 19999999999999999999995433 


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA  157 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      ..+.|    ++|+|+++++....++++.|||+|.+.  +.+++++++.+|++++||++.+....+       ..+...+.
T Consensus       224 ~~~~P----~~G~y~~~~~~~~~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~~~~~-------k~~~~~~~  292 (429)
T COG0579         224 FKIFP----VRGEYLVLDNEVKALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFL-------KGDRGVDF  292 (429)
T ss_pred             cccCc----cceEEEEEcccccccccceeecCCCCCCCCCcceeecccCCeEEECCCcccchhhh-------cccccccc
Confidence            77788    999999999865567889999999987  789999999999999999998763211       23456677


Q ss_pred             hhHHHHHHHHhhhCCCCC-CCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314          158 NRAERFYPEIRKYYPDLR-DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA  236 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P~l~-~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~  236 (240)
                      +..+.+.....+++|++. .......++|.||+...+..+..+|+|-...  ..++.++.+|..++|+|.+|++++.+.+
T Consensus       293 d~~d~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~--~~~~~~~~aGiRsq~lt~~~a~~~~~~~  370 (429)
T COG0579         293 DLLDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAK--DEDWFINVAGIRSQGLTADPAIAGGVLE  370 (429)
T ss_pred             chhhhHHHhhhhhcccccccccchhhhheeccccccccccccceeccccc--CCCCceeeeeEEccccccChhHhhhHhh
Confidence            888999999999999998 6667788999999873225567889987555  6789999999999999999999999988


Q ss_pred             HH
Q 026314          237 KF  238 (240)
Q Consensus       237 ~i  238 (240)
                      ++
T Consensus       371 ~~  372 (429)
T COG0579         371 LL  372 (429)
T ss_pred             hc
Confidence            75

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.92  E-value=7.3e-24  Score=195.58  Aligned_cols=210  Identities=17%  Similarity=0.193  Sum_probs=157.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh-cC-CC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF-IG-LD   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~-~~-~~   79 (240)
                      ++++.|+++|++++++++|+++.++++.|.|++.+..          +|++.+|+|+.||||||+|++++++++ +. .+
T Consensus       160 ~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~----------~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~  229 (508)
T PRK12266        160 LNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTA----------TGKRYTVRARALVNAAGPWVKQFLDDGLGLPSP  229 (508)
T ss_pred             HHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcC----------CCCEEEEEcCEEEECCCccHHHHHhhccCCCCC
Confidence            4678899999999999999999988887877765421          123457999999999999999998754 31 23


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .++.|    .||++++++..... ....+++.+  .+..+++.|..+|.+++|++.+...+.        ..+..++.++
T Consensus       230 ~~i~p----~kG~~lvl~~~~~~-~~~~~~~~~--dgr~v~~~P~~~g~~liGttd~~~~~~--------~~~~~~~~~~  294 (508)
T PRK12266        230 YGIRL----VKGSHIVVPRLFDH-DQAYILQNP--DGRIVFAIPYEDDFTLIGTTDVEYKGD--------PAKVAISEEE  294 (508)
T ss_pred             cceee----eeeEEEEECCcCCC-CcEEEEeCC--CCCEEEEEEeCCCeEEEecCCCCCCCC--------CCCCCCCHHH
Confidence            44555    99999998653211 112233333  234456788878899999876432210        3456678899


Q ss_pred             HHHHHHHHhhhCC-CCCCCCccccccccCCeecCC----CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          160 AERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       160 ~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~----~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                      ++++++.++++|| .|...++.+.|+|+||++.+.    ....++|+|..+..++.+|++.++|..   +|+++.|||.+
T Consensus       295 i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl~~d~~~~~~~~sr~~~i~~~~~~g~~gli~v~Ggk---~Tt~r~mAe~~  371 (508)
T PRK12266        295 IDYLCKVVNRYFKKQLTPADVVWTYSGVRPLCDDESDSAQAITRDYTLELDDENGGAPLLSVFGGK---ITTYRKLAEHA  371 (508)
T ss_pred             HHHHHHHHHHhcCCCCCHHHEEEEeeeeEeeCCCCCCCcccCCcceEEEecccCCCCCeEEEEcCh---HHHHHHHHHHH
Confidence            9999999999996 899999999999999998653    233588988665323678999999865   99999999999


Q ss_pred             HHHHh
Q 026314          235 AAKFL  239 (240)
Q Consensus       235 a~~i~  239 (240)
                      ++++.
T Consensus       372 ~~~~~  376 (508)
T PRK12266        372 LEKLA  376 (508)
T ss_pred             HHHHH
Confidence            99875

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.92  E-value=1.5e-24  Score=198.12  Aligned_cols=200  Identities=14%  Similarity=0.106  Sum_probs=146.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|++.|+++|++|+++++|++|+. ++.+.|+|++|                +++||+||+|+|+|+..+.+.+   ...
T Consensus       188 ~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g----------------~v~A~~VV~Atga~s~~l~~~~---~~~  247 (460)
T TIGR03329       188 GLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG----------------QVTADKVVLALNAWMASHFPQF---ERS  247 (460)
T ss_pred             HHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc----------------EEECCEEEEcccccccccChhh---cCe
Confidence            578899999999999999999975 55677889888                7999999999999999988766   233


Q ss_pred             cCCCceeeceeEEEEcCCCCCCccceeec----CCCCCCCeeEEEeecCCcEEEcCCccccC-Ccccccccccccccccc
Q 026314           82 FIPPAYYARGCYFSLANTKVAPFKHLIYP----IPEDGGLGVHVTLDLDGQIKFGPDVEWID-GIDDTLSFLNRFDYSVN  156 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~~~~~i~~----~p~~~~~~~~~~~~~~g~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~  156 (240)
                      +.|    ++++++++++.. ........+    +.+......|+++..+|++++|....... ...+      .......
T Consensus       248 ~~p----~~~~~~~t~pl~-~~~~~~~~~~~~~~~d~~~~~~y~r~~~dgrll~G~~~~~~~~~~~~------~~~~~~~  316 (460)
T TIGR03329       248 IAI----VSSDMVITEPAP-DLLAATGLDHGTSVLDSRIFVHYYRSTPDGRLMLGKGGNTFAYGGRM------LPVFNQP  316 (460)
T ss_pred             EEE----eccceEecCCCc-HHHHhhcCCCCceEecchhhhhheeECCCCcEEEcCCccccccCccc------ccccCCc
Confidence            445    777877766532 111111111    11111122477888788999986432110 0000      0001111


Q ss_pred             hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314          157 ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA  236 (240)
Q Consensus       157 ~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~  236 (240)
                      ....+.+.+.+.++||.|.+..+.+.|+|++++     ++|..|+||..+  ..+|+|+++|++|+|+++|+++|+++|+
T Consensus       317 ~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~-----t~D~~P~iG~~~--~~~gl~~a~G~~G~Gv~~a~~~G~~lA~  389 (460)
T TIGR03329       317 SPYEALLTRSLRKFFPALAEVPIAASWNGPSDR-----SVTGLPFFGRLN--GQPNVFYGFGYSGNGVAPSRMGGQILSS  389 (460)
T ss_pred             hHHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC-----CCCCCceeeeec--CCCCEEEEeCcCCCChhHHHHHHHHHHH
Confidence            233567889999999999999999999999998     678889999887  5789999999999999999999999999


Q ss_pred             HHh
Q 026314          237 KFL  239 (240)
Q Consensus       237 ~i~  239 (240)
                      +|+
T Consensus       390 li~  392 (460)
T TIGR03329       390 LVL  392 (460)
T ss_pred             Hhc
Confidence            985

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.92  E-value=2.4e-23  Score=185.15  Aligned_cols=203  Identities=13%  Similarity=0.087  Sum_probs=147.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.++++|++++++++|++|+.+++++.|+++++                ++.||.||+|+|.|+..|++++ +..++
T Consensus       150 ~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~----------------~i~a~~vV~aaG~~~~~l~~~~-g~~~~  212 (380)
T TIGR01377       150 ALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG----------------SYQANKLVVTAGAWTSKLLSPL-GIEIP  212 (380)
T ss_pred             HHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC----------------EEEeCEEEEecCcchHHHhhhc-ccCCC
Confidence            567888899999999999999998888888888776                7999999999999999999988 55666


Q ss_pred             cCCCceeeceeEEEEcCCCCCC--c--cceeecCCCCCCCeeEEEeecCC-cEEEcCCcc-ccCCccccccccccccccc
Q 026314           82 FIPPAYYARGCYFSLANTKVAP--F--KHLIYPIPEDGGLGVHVTLDLDG-QIKFGPDVE-WIDGIDDTLSFLNRFDYSV  155 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~--~--~~~i~~~p~~~~~~~~~~~~~~g-~~~~G~~~~-~~~~~~~~~~~~~~~~~~~  155 (240)
                      +.|    .+++...+.......  +  ....+..... ...+|+.|..++ +++++.... ...++..     ..++...
T Consensus       213 ~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  282 (380)
T TIGR01377       213 LQP----LRINVCYWREKEPGSYGVSQAFPCFLVLGL-NPHIYGLPSFEYPGLMKVYYHHGQQIDPDE-----RDCPFGA  282 (380)
T ss_pred             ceE----EEEEEEEEecCCccccCccCCCCEEEEeCC-CCceEecCCCCCCceEEEEeCCCCccCccc-----ccCCCCC
Confidence            666    888876664321110  0  0111111111 123667776542 456553221 1001000     0223345


Q ss_pred             chhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHH
Q 026314          156 NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA  235 (240)
Q Consensus       156 ~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va  235 (240)
                      +.+.++.+.+.+.+++|.|.... .+.|.|+|+.     +||..|+||..+  +.+|+|+++|++|+||++||++|+++|
T Consensus       283 ~~~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~-----t~D~~piIg~~p--~~~~l~va~G~~g~G~~~~p~~g~~la  354 (380)
T TIGR01377       283 DIEDVQILRKFVRDHLPGLNGEP-KKGEVCMYTN-----TPDEHFVIDLHP--KYDNVVIGAGFSGHGFKLAPVVGKILA  354 (380)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCc-ceeeEEEecc-----CCCCCeeeecCC--CCCCEEEEecCCccceeccHHHHHHHH
Confidence            66788999999999999998544 5679999987     688999999998  789999999999999999999999999


Q ss_pred             HHHh
Q 026314          236 AKFL  239 (240)
Q Consensus       236 ~~i~  239 (240)
                      |+|.
T Consensus       355 ~li~  358 (380)
T TIGR01377       355 ELAM  358 (380)
T ss_pred             HHHh
Confidence            9985

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.91  E-value=3.5e-23  Score=194.94  Aligned_cols=206  Identities=19%  Similarity=0.195  Sum_probs=154.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL   78 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~   78 (240)
                      +|++.|+++|++|+++++|+++...  ++++. |++.+..          .+++++|.||.||||||+|++.|++++++.
T Consensus       237 al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~----------tg~~~~i~a~~VVnAaGaws~~l~~~~g~~  306 (627)
T PLN02464        237 ALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNL----------TGKEFDVYAKVVVNAAGPFCDEVRKMADGK  306 (627)
T ss_pred             HHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECC----------CCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence            6889999999999999999999876  35443 5442211          122446899999999999999999998422


Q ss_pred             C-CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314           79 D-NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA  157 (240)
Q Consensus        79 ~-~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      . ..+.|    .||+|++++....+.....+++... .+..+++.|. +|.+++|++.+..+.         ..+..+++
T Consensus       307 ~~~~I~p----~kG~hlvl~~~~~~~~~~~i~~~~~-dgr~~~~~P~-~g~~liGtTd~~~~~---------~~~~~~t~  371 (627)
T PLN02464        307 AKPMICP----SSGVHIVLPDYYSPEGMGLIVPKTK-DGRVVFMLPW-LGRTVAGTTDSKTPI---------TMLPEPHE  371 (627)
T ss_pred             CCCceEe----eeeEEEecccccCCCCceEEecCCC-CCCEEEEEec-CCcEEEecCCCCCCC---------CCCCCCCH
Confidence            2 22445    9999999864321211234555322 3455788887 889999988765432         44666788


Q ss_pred             hhHHHHHHHHhhhCC-CCCCCCccccccccCCeecCC-----CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHH
Q 026314          158 NRAERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP-----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIA  231 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~-----~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g  231 (240)
                      ++++++++.++++|| .|...+|.+.|+|+||++.++     ..+.++++|-.+.    +|++.++|..   +|+++.+|
T Consensus       372 ~ei~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl~~d~~~~~~~~~sr~~~i~~~~----~gli~i~GGk---~Tt~R~mA  444 (627)
T PLN02464        372 DEIQFILDAISDYLNVKVRRSDVLSAWSGIRPLAVDPSAKSTESISRDHVVCEEP----DGLVTITGGK---WTTYRSMA  444 (627)
T ss_pred             HHHHHHHHHHHHhhCCCCChhhEEEEEEeEEeeccCCCCCcccccCCceEEEecC----CCeEEEECCh---HHHHHHHH
Confidence            999999999999999 799999999999999998653     1235777775432    5899999876   99999999


Q ss_pred             HHHHHHHh
Q 026314          232 EYVAAKFL  239 (240)
Q Consensus       232 ~~va~~i~  239 (240)
                      |.+.|.+.
T Consensus       445 e~~~d~~~  452 (627)
T PLN02464        445 EDAVDAAI  452 (627)
T ss_pred             HHHHHHHH
Confidence            99999875

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.91  E-value=2.8e-23  Score=184.90  Aligned_cols=202  Identities=21%  Similarity=0.180  Sum_probs=154.2

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|++.++++| +.++.+++|+.++..++.+.|.|.+|                +++|++||+|+|+|+..+..+++..++
T Consensus       161 ~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g----------------~i~a~~vv~a~G~~~~~l~~~~~~~~~  224 (387)
T COG0665         161 ALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGG----------------TIEADKVVLAAGAWAGELAATLGELPL  224 (387)
T ss_pred             HHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCc----------------cEEeCEEEEcCchHHHHHHHhcCCCcC
Confidence            6788999999 57777999999987435577999998                799999999999999999998832556


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh--
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN--  158 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~--  158 (240)
                      ++.|    .+++++.+++.....................|++|..++++++|.+.+....          .+.....+  
T Consensus       225 ~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~~----------~~~~~~~~~~  290 (387)
T COG0665         225 PLRP----VRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRGDGRLRVGGTDEEGGD----------DPSDPEREDL  290 (387)
T ss_pred             cccc----ccceEEEecCCCccccccccceEEEecCCceEEEEcCCCcEEEeecccccCC----------CCccccCcch
Confidence            6777    9999999986532111110000111123446888888899999987654311          11111112  


Q ss_pred             hHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314          159 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  238 (240)
Q Consensus       159 ~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i  238 (240)
                      ....+++.+.+++|.|....+.+.|+|.|+.+    +||+.++||...  ..+|+|+++|++++|+++||++|+++|++|
T Consensus       291 ~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t----~pd~~P~iG~~~--~~~~l~~a~G~~~~G~~~~p~~g~~lA~li  364 (387)
T COG0665         291 VIAELLRVARALLPGLADAGIEAAWAGLRPPT----TPDGLPVIGRAA--PLPNLYVATGHGGHGFTLAPALGRLLADLI  364 (387)
T ss_pred             hHHHHHHHHHHhCccccccccceeeeccccCC----CCCCCceeCCCC--CCCCEEEEecCCCcChhhccHHHHHHHHHH
Confidence            46799999999999999999999999999973    378899999633  268999999999999999999999999998


Q ss_pred             h
Q 026314          239 L  239 (240)
Q Consensus       239 ~  239 (240)
                      +
T Consensus       365 ~  365 (387)
T COG0665         365 L  365 (387)
T ss_pred             c
Confidence            6

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.91  E-value=1.1e-23  Score=200.11  Aligned_cols=190  Identities=17%  Similarity=0.115  Sum_probs=150.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.+++ |++++++++|++++..+++|.|+|+++.               .++|+.||+|+|.|+..+.++.   .++
T Consensus       413 aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~---------------~~~ad~VV~A~G~~s~~l~~~~---~lp  473 (662)
T PRK01747        413 ALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGT---------------LASAPVVVLANGHDAARFAQTA---HLP  473 (662)
T ss_pred             HHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCc---------------EEECCEEEECCCCCcccccccc---CCC
Confidence            57778888 9999999999999988888999887772               4789999999999999887643   456


Q ss_pred             cCCCceeeceeEEEEcCCCCC-CccceeecCCCCCCCeeEEEe-ecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           82 FIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDGGLGVHVTL-DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~p~~~~~~~~~~~-~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +.|    +||+++.++..... ..+..+       ..+.|++| ..+|.+++|.+.+..           ..+..++.+.
T Consensus       474 l~p----~RGqv~~~~~~~~~~~~~~~~-------~~~~Y~~p~~~~g~~~iGat~~~~-----------~~~~~~~~~~  531 (662)
T PRK01747        474 LYS----VRGQVSHLPTTPALSALKQVL-------CYDGYLTPQPANGTHCIGASYDRD-----------DTDTAFREAD  531 (662)
T ss_pred             ccc----ccceEEeecCCccccccCcee-------ECCceeCCCCCCCceEeCcccCCC-----------CCCCCCCHHH
Confidence            677    99999988653211 111111       11247888 678889999875432           3344566777


Q ss_pred             HHHHHHHHhhhCCCC-----CCCCccccccccCCeecCCCCCCCCeEEec----------------------CCCCCCCC
Q 026314          160 AERFYPEIRKYYPDL-----RDGSLQPSYAGIRPKLSGPRQSPIDFVIQG----------------------DDTHGVPG  212 (240)
Q Consensus       160 ~~~~~~~~~~~~P~l-----~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~----------------------~~~~~~~~  212 (240)
                      .+.+++.+.+++|.+     .+..+.+.|+|+|+.     ++|+.|+||.                      .+  ..+|
T Consensus       532 ~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~-----tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~--~~~g  604 (662)
T PRK01747        532 HQENLERLAECLPQALWAKEVDVSALQGRVGFRCA-----SRDRLPMVGNVPDEAATLAEYAALANQQPARDAP--RLPG  604 (662)
T ss_pred             HHHHHHHHHHhCCCchhhhccCccccCceEEEecc-----CCCcccccCCCCCHHHHHHHHHhhhhccccccCC--CCCC
Confidence            888999999999987     466778899999998     6788899998                      44  5789


Q ss_pred             EEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          213 LVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       213 ~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +|+++|++|+||++||++|+++|++|.
T Consensus       605 l~v~~G~gs~Gl~~ap~~a~~lA~li~  631 (662)
T PRK01747        605 LYVAGALGSRGLCSAPLGAELLASQIE  631 (662)
T ss_pred             eEEEecccccHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999985

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=99.91  E-value=8e-24  Score=178.26  Aligned_cols=219  Identities=34%  Similarity=0.481  Sum_probs=177.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe---E--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh-c
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC---M--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF-I   76 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~---~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~-~   76 (240)
                      +.+.-+..|.++.++.+|.++......   +  +|.-..+   +            +++++.||.|||..++++++.. +
T Consensus       202 ~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~---e------------e~r~~~~vtc~gl~sdr~aa~sgc  266 (453)
T KOG2665|consen  202 FGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKG---E------------EKRTKNVVTCAGLQSDRCAALSGC  266 (453)
T ss_pred             HHHHHHHhcccccccceeccchhccCCCCCCceEEecCcc---c------------eeEEeEEEEeccccHhHHHHHhCC
Confidence            556678889999999999999876642   2  3333333   2            7999999999999999999988 3


Q ss_pred             CCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeecCCcEEEcCCcccc---------C-Ccccc
Q 026314           77 GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDLDGQIKFGPDVEWI---------D-GIDDT  144 (240)
Q Consensus        77 ~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~~g~~~~G~~~~~~---------~-~~~~~  144 (240)
                      ..+..++|    ++|.|+.+.++....+++.|||+|+++  +.++|++|..+|.+++|+++...         + ...|+
T Consensus       267 ~~dPriVp----frG~ylll~~ek~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~  342 (453)
T KOG2665|consen  267 ELDPRIVP----FRGEYLLLKPEKLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDL  342 (453)
T ss_pred             CCCCeeee----ccchhhhcChHHhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccch
Confidence            45667888    999999998876677888999999988  57899999999999999987311         1 01122


Q ss_pred             cc----------cccccccccchhhHHHHH----HHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCC
Q 026314          145 LS----------FLNRFDYSVNANRAERFY----PEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHG  209 (240)
Q Consensus       145 ~~----------~~~~~~~~~~~~~~~~~~----~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~  209 (240)
                      ++          +.+.|++.+++...+.++    .++++|+|+|++.++.+..+|+|.+.-+. ++..+||+++....+.
T Consensus       343 ~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g~g~~  422 (453)
T KOG2665|consen  343 VEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGGEGHL  422 (453)
T ss_pred             hhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecCcccc
Confidence            21          236788888876666555    99999999999999999999999776655 6777899998887778


Q ss_pred             CCCEEEEeCCCCchHhhhHHHHHHHHHHHhC
Q 026314          210 VPGLVNLFGIESPGLTSSMAIAEYVAAKFLR  240 (240)
Q Consensus       210 ~~~~~~~~G~~~~G~t~ap~~g~~va~~i~~  240 (240)
                      .++++++.+..++|.|+|.+||+++|+.+++
T Consensus       423 ~p~llh~rnapSPgaTSSlAIa~mIa~k~~~  453 (453)
T KOG2665|consen  423 VPRLLHVRNAPSPGATSSLAIAKMIADKFLN  453 (453)
T ss_pred             ccceEEecCCCCccchhhHHHHHHHHHHhcC
Confidence            9999999999999999999999999999875

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.91  E-value=5.5e-23  Score=186.82  Aligned_cols=208  Identities=20%  Similarity=0.224  Sum_probs=162.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC-C-
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL-D-   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~-~-   79 (240)
                      .+++.|.++|++++++++|+++.++++-|.|...+..          +|++++|+|+.||||||+|++++.++++.. . 
T Consensus       169 ~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~----------tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~  238 (532)
T COG0578         169 ANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE----------TGETYEIRARAVVNAAGPWVDEILEMAGLEQSP  238 (532)
T ss_pred             HHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC----------CCcEEEEEcCEEEECCCccHHHHHHhhcccCCC
Confidence            4678899999999999999999999985557776652          366889999999999999999999998321 1 


Q ss_pred             -CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314           80 -NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        80 -~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                       ..+.|    .||.|+++++. .+.....+++++.+ ...+++.|. ++..++|++....++.        +.+..++++
T Consensus       239 ~~~vr~----skGsHlVv~~~-~~~~~a~~~~~~~d-~r~~f~iP~-~~~~liGTTD~~~~~~--------~~~~~~~~e  303 (532)
T COG0578         239 HIGVRP----SKGSHLVVDKK-FPINQAVINRCRKD-GRIVFAIPY-EGKTLIGTTDTDYDGD--------PEDPRITEE  303 (532)
T ss_pred             Ccccee----ccceEEEeccc-CCCCceEEeecCCC-CceEEEecC-CCCEEeeccccccCCC--------cccCCCCHH
Confidence             24556    99999999872 22233456666642 344566764 6777999998765441        457778999


Q ss_pred             hHHHHHHHHhhh-CCCCCCCCccccccccCCeecCC----CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHH
Q 026314          159 RAERFYPEIRKY-YPDLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEY  233 (240)
Q Consensus       159 ~~~~~~~~~~~~-~P~l~~~~i~~~~aG~r~~~~~~----~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~  233 (240)
                      +++++++.++++ -|.|...+|.++|+|+||++.+.    ..-.+++.|-.+.  +.+|++.++|..   +|+...+||.
T Consensus       304 Eidyll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~--~~~glltv~GGK---lTTyR~maE~  378 (532)
T COG0578         304 EIDYLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHA--ELAGLLTVAGGK---LTTYRKMAED  378 (532)
T ss_pred             HHHHHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecC--CCCCeEEEecch---hHHhHHHHHH
Confidence            999999999944 48899999999999999998742    2235788876665  367999999877   9999999999


Q ss_pred             HHHHHh
Q 026314          234 VAAKFL  239 (240)
Q Consensus       234 va~~i~  239 (240)
                      +++++.
T Consensus       379 a~d~v~  384 (532)
T COG0578         379 ALDAVC  384 (532)
T ss_pred             HHHHHH
Confidence            999874

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.89  E-value=9.2e-23  Score=185.50  Aligned_cols=206  Identities=17%  Similarity=0.142  Sum_probs=156.5

Q ss_pred             ChhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314            1 MWVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD   79 (240)
Q Consensus         1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~   79 (240)
                      |+|+++|+++||+|.++|+|++|....++ +.|+|..|                .|+|.+||||||.|++.+.+|. +.+
T Consensus       191 ~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G----------------~iet~~~VNaaGvWAr~Vg~m~-gvk  253 (856)
T KOG2844|consen  191 QALARAASALGALVIENCPVTGLHVETDKFGGVETPHG----------------SIETECVVNAAGVWAREVGAMA-GVK  253 (856)
T ss_pred             HHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc----------------ceecceEEechhHHHHHhhhhc-CCc
Confidence            68999999999999999999999887765 56999999                8999999999999999999998 578


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCC-CCeeEEEeecCCcEEEcCCccccCCcccccc-cccccccccch
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG-GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLS-FLNRFDYSVNA  157 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~-~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~-~~~~~~~~~~~  157 (240)
                      .+.+|    +..+|+++++-..  +...  +.|..+ ..+..+.+...+.+++|+.+...-..+.... +.... ..+|.
T Consensus       254 vPL~p----~~H~YvvT~~IeG--i~s~--t~p~irD~DgSvylR~~~~gil~GGyE~n~i~~egv~~~~~~~l-qE~DW  324 (856)
T KOG2844|consen  254 VPLVP----MHHAYVVTSRIEG--VSSL--TRPNIRDLDGSVYLRQQGDGILFGGYESNPIFTEGVPPGFATGL-QEPDW  324 (856)
T ss_pred             cccee----eeeeEEEecccCC--ccCC--CccceecccceEEEEecCCceeccccccCceeccccCCcccccc-ccccH
Confidence            77777    9999999876421  1110  111111 3333444555678888887532100000000 00011 12677


Q ss_pred             hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314          158 NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  237 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~  237 (240)
                      +..+..++.+.+++|.|+..++.+.-+|...+     |||.-+++|+++  +..|+|+++|+++.|++++-++|+.++++
T Consensus       325 d~F~~hlesai~r~P~l~k~~i~~~v~gpe~f-----tPD~~p~mGe~p--~~~gy~v~~G~ns~G~~~~GG~Gk~la~w  397 (856)
T KOG2844|consen  325 DHFEPHLEAAIERVPVLEKAGIKSLVNGPETF-----TPDHLPIMGESP--EVRGYWVACGFNSAGLSFGGGCGKYLAEW  397 (856)
T ss_pred             hhhHHHHHHHHHhCchhhhcCccceecCcccc-----CCccccccCCCc--cccceEEeecCCccceeccCchhHHHHHH
Confidence            78889999999999999998887766665554     789999999999  89999999999999999999999999999


Q ss_pred             Hh
Q 026314          238 FL  239 (240)
Q Consensus       238 i~  239 (240)
                      |.
T Consensus       398 i~  399 (856)
T KOG2844|consen  398 II  399 (856)
T ss_pred             hh
Confidence            85

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.89  E-value=2.8e-22  Score=177.56  Aligned_cols=186  Identities=18%  Similarity=0.207  Sum_probs=133.0

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|++.++++ |++|+++++|++|+..    .|+|++|                +++||+||+|+|+|+..|++.+ ..++
T Consensus       150 ~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g----------------~i~a~~VV~A~G~~s~~l~~~~-~~~~  208 (365)
T TIGR03364       150 ALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG----------------DVHADQVFVCPGADFETLFPEL-FAAS  208 (365)
T ss_pred             HHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC----------------cEEeCEEEECCCCChhhhCcch-hhcc
Confidence            466777775 9999999999999642    6788877                6899999999999999988766 3456


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceee--------------------------cCCC--CCCCeeEEEeecCCcEEEc
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIY--------------------------PIPE--DGGLGVHVTLDLDGQIKFG  132 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~--------------------------~~p~--~~~~~~~~~~~~~g~~~~G  132 (240)
                      ++.|    +|++++.+++.....+...+.                          +.|.  .....++++|..+|++++|
T Consensus       209 ~~~p----~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG  284 (365)
T TIGR03364       209 GVRR----CKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIG  284 (365)
T ss_pred             Ccce----EEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEec
Confidence            6777    999999987642111111000                          0011  1133468899889999999


Q ss_pred             CCccccCCcccccccccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCC
Q 026314          133 PDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPG  212 (240)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~  212 (240)
                      ++.++.....       ..   .+.+..+.+.+.+.+++ .|.+.++.+.|+|+||.     +++..++++.    ..+|
T Consensus       285 ~~~~~~~~~~-------~~---~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~-----t~d~~~v~~~----~~~g  344 (365)
T TIGR03364       285 DSHEYGLAPD-------PF---DDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYAS-----SPPAPIFLER----PDDG  344 (365)
T ss_pred             CcccccCCCC-------Cc---chHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecC-----CCCCCceecC----CCCC
Confidence            8765432100       11   12334456777777766 68888999999999998     5655566653    2589


Q ss_pred             EEEEeCCCCchHhhhHHHHH
Q 026314          213 LVNLFGIESPGLTSSMAIAE  232 (240)
Q Consensus       213 ~~~~~G~~~~G~t~ap~~g~  232 (240)
                      +|+++|++|+|+++||++|+
T Consensus       345 ~~~a~G~~g~G~~~ap~~~~  364 (365)
T TIGR03364       345 VTVVVVTSGAGMTLSFGLAE  364 (365)
T ss_pred             eEEEEecCCCcccccccccC
Confidence            99999999999999999986

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.86  E-value=1.3e-20  Score=172.43  Aligned_cols=218  Identities=20%  Similarity=0.206  Sum_probs=155.0

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEe-CCeEEEE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhc
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLE-GNCMNVY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI   76 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~-~~~~~V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~   76 (240)
                      +|++.+.+ .|++++++++|++|++. ++.|+|+   +..+             +..+++||+||||||+|++.|++++|
T Consensus       189 aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g-------------~~~~i~Ad~VV~AAGawS~~La~~~G  255 (497)
T PRK13339        189 KLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTG-------------EKREQVADYVFIGAGGGAIPLLQKSG  255 (497)
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCC-------------ceEEEEcCEEEECCCcchHHHHHHcC
Confidence            57777865 49999999999999887 6678775   3333             11258999999999999999999994


Q ss_pred             CC---CCccCCCceeeceeEEEEcCCCCCCcc---ceeecCCCCCC--Cee-EE-EeecCCc--EEEcCCccccCC----
Q 026314           77 GL---DNVFIPPAYYARGCYFSLANTKVAPFK---HLIYPIPEDGG--LGV-HV-TLDLDGQ--IKFGPDVEWIDG----  140 (240)
Q Consensus        77 ~~---~~~~~p~~~~~~g~~~~~~~~~~~~~~---~~i~~~p~~~~--~~~-~~-~~~~~g~--~~~G~~~~~~~~----  140 (240)
                      ..   .+.++|    ++|+|+.++++  ..+.   ..||+++++..  ..+ |+ ++..+|+  ++|||++.+...    
T Consensus       256 i~~~~~~~i~P----vkGq~l~l~~~--~~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~~~~~~r~  329 (497)
T PRK13339        256 IPESKHLGGFP----ISGQFLRCTNP--EVVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGFGPKFLKH  329 (497)
T ss_pred             CCccCCCceEe----eeEEEEEecCH--HHhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccchHHHhcc
Confidence            32   267788    99999999863  3333   35899987642  222 44 5566785  899999875311    


Q ss_pred             --cccccccc-------------ccc---ccccch--hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCC
Q 026314          141 --IDDTLSFL-------------NRF---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPID  199 (240)
Q Consensus       141 --~~~~~~~~-------------~~~---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~  199 (240)
                        ..|++...             +.+   .+...+  .....+++.+++|+|.+...++....+|+|+++.+. +...+|
T Consensus       330 ~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~d  409 (497)
T PRK13339        330 GSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRMNHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKG  409 (497)
T ss_pred             CCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCC
Confidence              12222111             011   111111  124567889999999999999999999999999876 555557


Q ss_pred             eEE-ecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314          200 FVI-QGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  238 (240)
Q Consensus       200 ~ii-~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i  238 (240)
                      |++ |.......++.+++....|||+|+|..+|+.+++.+
T Consensus       410 fl~~g~~~i~~~~~s~~~lna~SPgATssl~ia~~v~~~~  449 (497)
T PRK13339        410 FIQFGTEVVNSQDHSVIALLGESPGASTSVSVALEVLERN  449 (497)
T ss_pred             EEEecceeeecCCCeEEEecCCCcHHHhhHHHHHHHHHHH
Confidence            864 443222356888888889999999999999999864

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.85  E-value=5.3e-20  Score=168.74  Aligned_cols=217  Identities=20%  Similarity=0.239  Sum_probs=151.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC--
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL--   78 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~--   78 (240)
                      +|++.++++|++|+++++|++|++.+ +.|.|++.+..          .++..+++|++||||||+|++.|++++|..  
T Consensus       183 aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~----------~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~~  252 (483)
T TIGR01320       183 QLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTR----------TGGKRTLNTRFVFVGAGGGALPLLQKSGIPEV  252 (483)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeecc----------CCceEEEECCEEEECCCcchHHHHHHcCCCcC
Confidence            67889999999999999999999865 46776543210          111236999999999999999999998422  


Q ss_pred             -CCccCCCceeeceeEEEEcCC-CCCCccceeecCCCCCC--Cee-EE-EeecCCcEE--EcCCcccc-----CCc-ccc
Q 026314           79 -DNVFIPPAYYARGCYFSLANT-KVAPFKHLIYPIPEDGG--LGV-HV-TLDLDGQIK--FGPDVEWI-----DGI-DDT  144 (240)
Q Consensus        79 -~~~~~p~~~~~~g~~~~~~~~-~~~~~~~~i~~~p~~~~--~~~-~~-~~~~~g~~~--~G~~~~~~-----~~~-~~~  144 (240)
                       .+.++|    ++|+|+.++.+ .....+..||++|++..  .++ |+ .+..+|+..  |||++.+.     ++. .|+
T Consensus       253 ~~~~i~P----~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~  328 (483)
T TIGR01320       253 KGFAGFP----VSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDL  328 (483)
T ss_pred             CCCceee----eeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHH
Confidence             356677    99999999754 22344567999998753  333 44 444567655  99998721     111 132


Q ss_pred             cc---cc----------cc---cccccc--hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCC-----C-CC
Q 026314          145 LS---FL----------NR---FDYSVN--ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQS-----P-ID  199 (240)
Q Consensus       145 ~~---~~----------~~---~~~~~~--~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~-----~-~~  199 (240)
                      +.   +.          +.   ..+...  .......++.+++++|.+..+++....+|+|+++.+. ++.     + ++
T Consensus       329 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~  408 (483)
T TIGR01320       329 PLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGT  408 (483)
T ss_pred             hhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCC
Confidence            11   00          00   011111  0122345788999999999999999999999999864 222     1 35


Q ss_pred             eEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314          200 FVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  237 (240)
Q Consensus       200 ~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~  237 (240)
                      ++|..     .++.+++....|||+|+|..+|+.+++.
T Consensus       409 ~~i~~-----~~~~~~~l~~~SPgaTss~~i~~~v~~~  441 (483)
T TIGR01320       409 TLIAD-----ADGSIAGLLGASPGASTAVSIMLDLLER  441 (483)
T ss_pred             eEEEC-----CCCeEEEecCCCchHHhhHHHHHHHHHH
Confidence            56653     3588888888999999999999999985

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.85  E-value=1.7e-20  Score=171.92  Aligned_cols=209  Identities=22%  Similarity=0.328  Sum_probs=155.7

Q ss_pred             hhhHHHHH----CC--cEEEcCceEEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHH
Q 026314            2 WVQGEAEN----HG--TTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR   74 (240)
Q Consensus         2 al~~~A~~----~G--a~i~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~   74 (240)
                      +|++.|++    +|  ++|+++++|++|++. ++.|.|+|++|                +++||+||||||+|+..|+++
T Consensus       216 al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G----------------~i~A~~VVvaAG~~S~~La~~  279 (497)
T PTZ00383        216 SFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG----------------EIRARFVVVSACGYSLLFAQK  279 (497)
T ss_pred             HHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC----------------EEEeCEEEECcChhHHHHHHH
Confidence            57888888    88  789999999999988 45678999888                899999999999999999999


Q ss_pred             hc-CCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCC--CCeeEEEeec--CCcEEEcCCccccC---Cc--c--
Q 026314           75 FI-GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDG--GLGVHVTLDL--DGQIKFGPDVEWID---GI--D--  142 (240)
Q Consensus        75 ~~-~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~--~~~~~~~~~~--~g~~~~G~~~~~~~---~~--~--  142 (240)
                      +| +.++.++|    ++|+|+.++.    .++..||++|++.  +.++|+.++.  +|+++|||++.+..   .+  .  
T Consensus       280 ~Gi~~~~~i~P----v~G~~~~~~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~  351 (497)
T PTZ00383        280 MGYGLEYSCLP----VAGSFYFSGN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSL  351 (497)
T ss_pred             hCCCCCCCEEe----cCceEEEcCh----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCch
Confidence            84 35788888    9999998752    4678899998864  5678888884  78899999985321   11  1  


Q ss_pred             -cccccccc--------cc----------------cccchhhHHHHHHHHhhhCCCCCCCCccc--cccccCCeecCCCC
Q 026314          143 -DTLSFLNR--------FD----------------YSVNANRAERFYPEIRKYYPDLRDGSLQP--SYAGIRPKLSGPRQ  195 (240)
Q Consensus       143 -~~~~~~~~--------~~----------------~~~~~~~~~~~~~~~~~~~P~l~~~~i~~--~~aG~r~~~~~~~~  195 (240)
                       |.+...+.        ++                ..+.......+++.+++++|.+..+++..  .++|+|+++.+.  
T Consensus       352 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~--  429 (497)
T PTZ00383        352 PDFLKVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPLLNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDK--  429 (497)
T ss_pred             HHHHHhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEEC--
Confidence             11110000        00                00001234567788999999999999986  466999999873  


Q ss_pred             CCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314          196 SPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  237 (240)
Q Consensus       196 ~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~  237 (240)
                      .++.+++|.......+|++...| .|||.|+|...|+.=+..
T Consensus       430 ~~~~L~~g~~~i~~~~~~i~~~~-~spgast~l~~~~~d~~~  470 (497)
T PTZ00383        430 VSKKLLLGEGKIDPGKGIIFNIT-PSPGATTCLGNAESDMRE  470 (497)
T ss_pred             CCCeEecCceEEecCCCcEEecc-CCCcHHHHHHHHHHHHHH
Confidence            33457778776656778887776 789999999988754433

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=99.84  E-value=1.4e-19  Score=154.21  Aligned_cols=217  Identities=17%  Similarity=0.170  Sum_probs=150.7

Q ss_pred             ChhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccC------CCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314            1 MWVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNW------DGVSPLQPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~------~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      +++.+.|..+||.+. +-+|++++-+..+ +.+.|+++.+....      -++.+......+++..+|||||+|+.++++
T Consensus       247 s~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~s~QvAr  325 (509)
T KOG2853|consen  247 SGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAWSGQVAR  325 (509)
T ss_pred             HHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCccHHHHHH
Confidence            356788999999998 5789998877543 34555555210000      002222334679999999999999999999


Q ss_pred             Hhc--------CCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeec-CCcEEEcCCccccCCcccc
Q 026314           74 RFI--------GLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDL-DGQIKFGPDVEWIDGIDDT  144 (240)
Q Consensus        74 ~~~--------~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~-~g~~~~G~~~~~~~~~~~~  144 (240)
                      +++        ..++++.|    .|.+.++.-.+..+-++.   |+-.+ ..+++++++. +|+.++|......+.++  
T Consensus       326 lAgIG~g~g~L~vplPiep----RKRyvyvi~~~~~PGl~~---Pl~iD-psG~f~Rrdglg~nfl~grsp~ed~~~d--  395 (509)
T KOG2853|consen  326 LAGIGKGPGLLAVPLPIEP----RKRYVYVIFAPDVPGLDT---PLTID-PSGVFFRRDGLGGNFLCGRSPSEDEEPD--  395 (509)
T ss_pred             HhccCCCCceeeecccCCc----cceeEEEEeCCCCCCCCC---ceeEC-CCccEEEecCCCCceecccCCccccCCC--
Confidence            983        12556666    888877765432221221   21111 1267888875 45677764421111110  


Q ss_pred             cccccccccccch-hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCch
Q 026314          145 LSFLNRFDYSVNA-NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPG  223 (240)
Q Consensus       145 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G  223 (240)
                           ..+..+|. ...+.++.++...+|.+...+|..+|+|....    +|-|...+||.+|  -+.|++.++|++|||
T Consensus       396 -----~~nldVD~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~----NtfD~ngViG~HP--~y~Nly~atGFsghG  464 (509)
T KOG2853|consen  396 -----HSNLDVDHDYFYQKIWPHLANRVPAFETAKVQSAWAGYYDH----NTFDDNGVIGEHP--LYTNLYMATGFSGHG  464 (509)
T ss_pred             -----ccccccChHHHHhhhhHHHHhcccccceeeeeehhcccccc----cccccCCcccCCc--ceeeeeeeecccccc
Confidence                 23334443 35667889999999999999999999999765    5778889999999  789999999999999


Q ss_pred             HhhhHHHHHHHHHHHh
Q 026314          224 LTSSMAIAEYVAAKFL  239 (240)
Q Consensus       224 ~t~ap~~g~~va~~i~  239 (240)
                      ++.+|++|+.+||+|+
T Consensus       465 vqqs~avgRAiaElIl  480 (509)
T KOG2853|consen  465 VQQSPAVGRAIAELIL  480 (509)
T ss_pred             hhcchHHHHHHHHHHh
Confidence            9999999999999986

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.81  E-value=5.8e-19  Score=162.13  Aligned_cols=222  Identities=20%  Similarity=0.251  Sum_probs=150.1

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC-
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL-   78 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~-   78 (240)
                      +|++.++++| ++|+++++|++|++.++ .|.|++.+..          .|+..+++|++||||||+|++.|+++++.. 
T Consensus       188 aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~----------~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~  257 (494)
T PRK05257        188 QLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLK----------TGEKRTVRAKFVFIGAGGGALPLLQKSGIPE  257 (494)
T ss_pred             HHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcC----------CCceEEEEcCEEEECCCcchHHHHHHcCCCc
Confidence            5788888887 89999999999998655 4876653210          011225999999999999999999998422 


Q ss_pred             --CCccCCCceeeceeEEEEcCCCCCCccce--eecCCCCCC--Cee-EE-EeecCCc--EEEcCCccccCC------cc
Q 026314           79 --DNVFIPPAYYARGCYFSLANTKVAPFKHL--IYPIPEDGG--LGV-HV-TLDLDGQ--IKFGPDVEWIDG------ID  142 (240)
Q Consensus        79 --~~~~~p~~~~~~g~~~~~~~~~~~~~~~~--i~~~p~~~~--~~~-~~-~~~~~g~--~~~G~~~~~~~~------~~  142 (240)
                        .++++|    ++|+|++++++. ...++.  ||+++++..  ..+ |+ ++..+|+  ++|||++.+...      ..
T Consensus       258 ~~~~~i~P----vrGq~l~~~~~~-~v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~~~~~~~~~~~~  332 (494)
T PRK05257        258 AKGYGGFP----VSGQFLVCENPE-VVAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGFSTKFLKNGSLL  332 (494)
T ss_pred             cCCCCeee----eeEEEEEcCCHH-HHhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccccHHhccCCCHH
Confidence              356778    999999997641 112344  899877332  222 33 5556775  999999865322      12


Q ss_pred             cccccc-------------ccc---ccccch--hhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEe
Q 026314          143 DTLSFL-------------NRF---DYSVNA--NRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQ  203 (240)
Q Consensus       143 ~~~~~~-------------~~~---~~~~~~--~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~  203 (240)
                      |++...             +.+   .+...+  .....+++.+++|+|.+..+++....+|+|+++.+. ....+.++.|
T Consensus       333 d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~  412 (494)
T PRK05257        333 DLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFG  412 (494)
T ss_pred             HHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECC
Confidence            222100             111   111111  125567888999999999999999999999999863 1111344444


Q ss_pred             cCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314          204 GDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  238 (240)
Q Consensus       204 ~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i  238 (240)
                      ..-....++.+++....|||+|+|..+|+.+++.+
T Consensus       413 ~~~i~~~~~~~~~l~~~SPgat~s~~i~~~v~~~~  447 (494)
T PRK05257        413 TEVVSSADGSIAALLGASPGASTAVPIMLEVLEKC  447 (494)
T ss_pred             cEEEecCCCeEEEEcCCCchHHHHHHHHHHHHHHh
Confidence            21111346888887789999999999999999864

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.79  E-value=5.1e-18  Score=144.47  Aligned_cols=203  Identities=16%  Similarity=0.150  Sum_probs=129.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC---CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG---NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL   78 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~---~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~   78 (240)
                      +|...|+++|+.|+.+.+|+.+...+   ..+.|.|.+|.               .++|+.+|.++|+|.+.|++...++
T Consensus       158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---------------~Y~akkiI~t~GaWi~klL~~~~~~  222 (399)
T KOG2820|consen  158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---------------IYHAKKIIFTVGAWINKLLPTSLAI  222 (399)
T ss_pred             HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---------------eeecceEEEEecHHHHhhcCccccc
Confidence            56788999999999999999987543   35678888882               5999999999999999999863355


Q ss_pred             CCccCCCceeec--eeEEEEcCCCCCCccceeecCCCCCCCeeEEEee-cCCc-EEEcCCccccCC--------cccccc
Q 026314           79 DNVFIPPAYYAR--GCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLD-LDGQ-IKFGPDVEWIDG--------IDDTLS  146 (240)
Q Consensus        79 ~~~~~p~~~~~~--g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~g~-~~~G~~~~~~~~--------~~~~~~  146 (240)
                      .+++.|    .+  -+||....+      ..+| ...  ....+..|. .++. ++.|........        -.+..+
T Consensus       223 ~~Pv~~----i~ltvcywk~~~~------~~~~-l~~--d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~  289 (399)
T KOG2820|consen  223 GFPVAP----IQLTVCYWKTKKN------MPVY-LFD--DDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVP  289 (399)
T ss_pred             CCccce----eEeehhhheeecC------Ccee-ecC--CCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCC
Confidence            666555    32  122322211      1111 000  011122221 1221 233321100000        000000


Q ss_pred             c-ccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCCCCCEEEEeCCCCchH
Q 026314          147 F-LNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGL  224 (240)
Q Consensus       147 ~-~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~  224 (240)
                      . +...........++-..+..++|.|++.+....      +-..|.+ +|||.+|+||.++  .+.|+++..|++||||
T Consensus       290 ~~~~~p~~~s~~~~idl~~~f~~~~~p~l~~~~p~------~t~~C~YT~TpD~~FviD~~P--~~~Nv~Vg~G~SGHGF  361 (399)
T KOG2820|consen  290 IDPDGPPKRSLPKAIDLMRRFLRTFGPDLDDRSPI------NTKMCMYTDTPDANFVIDKHP--QYDNVFVGGGGSGHGF  361 (399)
T ss_pred             CCCCCCcccCcchHHHHHHHHHHHhCccccCCCcc------eeeEEEeeCCCCcCeeeecCC--CcccEEEecCCCCcce
Confidence            0 001112223345666677778888999866553      4567778 8999999999999  7889999999999999


Q ss_pred             hhhHHHHHHHHHHHhC
Q 026314          225 TSSMAIAEYVAAKFLR  240 (240)
Q Consensus       225 t~ap~~g~~va~~i~~  240 (240)
                      +++|++|+.+|+++++
T Consensus       362 K~aP~iGk~lae~~~~  377 (399)
T KOG2820|consen  362 KFAPNIGKYLAEMAMG  377 (399)
T ss_pred             eecchHHHHHHHHhhh
Confidence            9999999999999864

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.78  E-value=4.1e-18  Score=152.43  Aligned_cols=206  Identities=17%  Similarity=0.198  Sum_probs=152.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhc-CC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI-GL   78 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~-~~   78 (240)
                      +++-.|.++||.+.++.+|.++.+++++ + .+...|..          +|++++|+|+.||||+|+.++.|.+|-. ..
T Consensus       229 ~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~i----------TG~e~~I~Ak~VVNATGpfsDsIr~Mdd~~~  298 (680)
T KOG0042|consen  229 AVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHI----------TGKEYEIRAKVVVNATGPFSDSIRKMDDEDA  298 (680)
T ss_pred             HHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEee----------cCcEEEEEEEEEEeCCCCccHHHHhhccccc
Confidence            4566789999999999999998887653 3 23333332          3678999999999999999999999972 22


Q ss_pred             CCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314           79 DNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        79 ~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +..++|    .-|.+++++.-+.+.-..++-  |...+..+.|+..+.|..++|.+....+.         ..+..++++
T Consensus       299 ~~i~~p----SsGvHIVlP~yY~P~~mGlld--P~TsDgRViFflPWqg~TIaGTTD~pt~v---------~~~P~PtE~  363 (680)
T KOG0042|consen  299 KPICVP----SSGVHIVLPGYYCPENMGLLD--PKTSDGRVIFFLPWQGKTIAGTTDIPTSV---------THSPTPTED  363 (680)
T ss_pred             Cceecc----CCceeEEcccccCCccccccc--CCCCCCcEEEEeccCCceeeccCCCCCCC---------CCCCCCCHH
Confidence            344456    899999987543222122222  22222335555557899999998765332         456778899


Q ss_pred             hHHHHHHHHhhhC---CCCCCCCccccccccCCeecCC-CC-----CCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHH
Q 026314          159 RAERFYPEIRKYY---PDLRDGSLQPSYAGIRPKLSGP-RQ-----SPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMA  229 (240)
Q Consensus       159 ~~~~~~~~~~~~~---P~l~~~~i~~~~aG~r~~~~~~-~~-----~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~  229 (240)
                      +++.+++.++.|+   +++...+|...|+|+||++.+| ..     ..++++|..++    .|++.++|..   +|+...
T Consensus       364 dIqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP~~~~~t~sl~R~H~v~~~~----~gLiTIaGGK---WTTyR~  436 (680)
T KOG0042|consen  364 DIQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDPKKVKDTQSLVRNHFVFVSP----SGLITIAGGK---WTTYRH  436 (680)
T ss_pred             HHHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCCCccccchhhhhhceEEecC----CCeEEEecCc---chhHHH
Confidence            9999999999998   3578899999999999999887 21     13556666644    6999999877   999999


Q ss_pred             HHHHHHHHHh
Q 026314          230 IAEYVAAKFL  239 (240)
Q Consensus       230 ~g~~va~~i~  239 (240)
                      +||...+.+.
T Consensus       437 MAEeTVd~aI  446 (680)
T KOG0042|consen  437 MAEETVDAAI  446 (680)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=99.64  E-value=1.8e-15  Score=126.91  Aligned_cols=149  Identities=19%  Similarity=0.257  Sum_probs=113.0

Q ss_pred             ecCEEEEcCCCChHHHHHHhcCCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCc
Q 026314           56 IPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDV  135 (240)
Q Consensus        56 ~a~~VV~aaG~wa~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~  135 (240)
                      ++|.||||||.|+..|+.   ..+  +.|    .||+.+.++.   +++.+.+|.  +.  ...++.|. .+++.+|++.
T Consensus       183 ~~DVivNCtGL~a~~L~g---Dd~--~yP----iRGqVl~V~A---pWvkhf~~~--D~--~~ty~iP~-~~~V~lGg~~  245 (342)
T KOG3923|consen  183 EYDVIVNCTGLGAGKLAG---DDD--LYP----IRGQVLKVDA---PWVKHFIYR--DF--SRTYIIPG-TESVTLGGTK  245 (342)
T ss_pred             CCcEEEECCccccccccC---Ccc--eee----ccceEEEeeC---CceeEEEEe--cC--CccEEecC-CceEEEcccc
Confidence            389999999999988765   212  567    9999999987   456676665  21  11356664 6789999987


Q ss_pred             cccCCcccccccccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCC--C-CCCCC
Q 026314          136 EWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDD--T-HGVPG  212 (240)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~--~-~~~~~  212 (240)
                      +..           .++..++.++...+++...++.|.|...++++.|+|+||.-..       -.+....  . ....-
T Consensus       246 Q~g-----------~w~~ei~~~D~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~Rk~-------vRlE~e~~~~~~k~~~  307 (342)
T KOG3923|consen  246 QEG-----------NWNLEITDEDRRDILERCCALEPSLRHAEIIREWVGLRPGRKQ-------VRLEAELRTRGGKRLT  307 (342)
T ss_pred             ccC-----------cccCcCChhhHHHHHHHHHHhCcccccceehhhhhcccCCCCc-------eeeeeeeecCCCccce
Confidence            654           6788889999999999999999999999999999999997321       1121111  0 01233


Q ss_pred             EEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          213 LVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       213 ~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +++..|++|.|||++.++|-.++.+++
T Consensus       308 VVHnYGHgG~G~Tl~wGtAlea~~Lv~  334 (342)
T KOG3923|consen  308 VVHNYGHGGNGFTLGWGTALEAAKLVL  334 (342)
T ss_pred             eEeeccCCCCceecccchHHHHHHHHH
Confidence            589999999999999999998888764

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.52  E-value=3.4e-13  Score=120.23  Aligned_cols=220  Identities=21%  Similarity=0.256  Sum_probs=145.5

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhc---
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFI---   76 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~---   76 (240)
                      .|.+.++++ |++++++++|++|++.+++ |.|++.+-.          ++...+++|++|+++||++|-.|++..|   
T Consensus       186 ~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~----------~~~~~~v~a~FVfvGAGG~aL~LLqksgi~e  255 (488)
T PF06039_consen  186 QLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLK----------TGEKREVRAKFVFVGAGGGALPLLQKSGIPE  255 (488)
T ss_pred             HHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecC----------CCCeEEEECCEEEECCchHhHHHHHHcCChh
Confidence            356677777 9999999999999998765 998774321          2345589999999999999999999884   


Q ss_pred             CCCCccCCCceeeceeEEEEcCCCC-CCccceeecCCCCC---CCeeEEE-eecCC--cEEEcCCccccCC------ccc
Q 026314           77 GLDNVFIPPAYYARGCYFSLANTKV-APFKHLIYPIPEDG---GLGVHVT-LDLDG--QIKFGPDVEWIDG------IDD  143 (240)
Q Consensus        77 ~~~~~~~p~~~~~~g~~~~~~~~~~-~~~~~~i~~~p~~~---~~~~~~~-~~~~g--~~~~G~~~~~~~~------~~~  143 (240)
                      +..+...|    +.|++++.+++.- ...+.-+|......   ..-.|+- +-.+|  .++|||++.+...      ..|
T Consensus       256 ~~gyggfP----VsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~KfLK~GS~~D  331 (488)
T PF06039_consen  256 GKGYGGFP----VSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSPKFLKNGSYLD  331 (488)
T ss_pred             hcccCCCc----ccceEEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCccccchHHhcCCcHHH
Confidence            35677889    9999999876420 01133455543211   0001221 12344  4889999875422      123


Q ss_pred             ccccc-------------cccc---cccc--hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEec
Q 026314          144 TLSFL-------------NRFD---YSVN--ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQG  204 (240)
Q Consensus       144 ~~~~~-------------~~~~---~~~~--~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~  204 (240)
                      ++...             ++.+   |-+.  ....+..++.+++|+|.+..++|....+|.|+++.++ ....+...+|.
T Consensus       332 l~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQiIkk~~~kgG~L~fGT  411 (488)
T PF06039_consen  332 LFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQSKEDRMEALRKFYPSAKPEDWELITAGQRVQIIKKDEKKGGVLQFGT  411 (488)
T ss_pred             HHhhcCcccHHHHHHHHhhhhhHHHHHHHhhccCHHHHHHHHHHhCccCChhceEEEecCceeeEEecCCCCCcEEecCc
Confidence            22110             0111   0000  1345667888999999999999999999999999875 22234455666


Q ss_pred             CCCCCCCCEEEE-eCCCCchHhhhHHHHHHHHH
Q 026314          205 DDTHGVPGLVNL-FGIESPGLTSSMAIAEYVAA  236 (240)
Q Consensus       205 ~~~~~~~~~~~~-~G~~~~G~t~ap~~g~~va~  236 (240)
                      ......+|.+.+ .| .|||.++|..++-.+.+
T Consensus       412 evI~s~dGsiaaLLG-ASPGASTav~iMl~vl~  443 (488)
T PF06039_consen  412 EVITSADGSIAALLG-ASPGASTAVSIMLDVLE  443 (488)
T ss_pred             eEEecCCCceEeecc-CCCChhhhHHHHHHHHH
Confidence            554456786654 66 67999999877766554

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=99.31  E-value=4.8e-11  Score=100.27  Aligned_cols=202  Identities=17%  Similarity=0.025  Sum_probs=128.2

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD   79 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~   79 (240)
                      .+..+|++.| +++.. -.|.++..+..++. |-..+.           .+......++++|+++|+|+.+|....   +
T Consensus       152 ~i~sea~k~~~V~lv~-Gkv~ev~dEk~r~n~v~~ae~-----------~~ti~~~d~~~ivvsaGPWTskllp~~---r  216 (380)
T KOG2852|consen  152 FILSEAEKRGGVKLVF-GKVKEVSDEKHRINSVPKAEA-----------EDTIIKADVHKIVVSAGPWTSKLLPFT---R  216 (380)
T ss_pred             HHHHHHHhhcCeEEEE-eeeEEeecccccccccchhhh-----------cCceEEeeeeEEEEecCCCchhhcccc---c
Confidence            5678888886 78886 56777764445543 322211           022336788999999999999988755   2


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccc-eeecCCCCC----CCeeEEEeecCC-cEEEcCCccccCCccccccccccccc
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKH-LIYPIPEDG----GLGVHVTLDLDG-QIKFGPDVEWIDGIDDTLSFLNRFDY  153 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~-~i~~~p~~~----~~~~~~~~~~~g-~~~~G~~~~~~~~~~~~~~~~~~~~~  153 (240)
                      +.  -    .|-..+++++..+. ++. .++-....+    ....-+.++.++ ..++|.+..+..-|+|      ..+.
T Consensus       217 Is--g----lrihsI~l~~~e~~-v~~~avf~~l~~~~g~ei~~pe~y~rkd~Evyicg~~~~e~~lPed------sd~v  283 (380)
T KOG2852|consen  217 IS--G----LRIHSITLSPGEKP-VGPSAVFCELNTMDGLEICKPEEYARKDREVYICGETDKEHLLPED------SDDV  283 (380)
T ss_pred             cc--e----eeeeeEEecCCCCC-CCCceEEEEEEeCCCccccCcceeecCCceEEEecCCCccccCCcc------cccc
Confidence            11  1    55566667664322 222 222211111    111112222343 4556665433211221      4456


Q ss_pred             ccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHH
Q 026314          154 SVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEY  233 (240)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~  233 (240)
                      .++++.+..+.+.+..+.+.|....+...-+=+.|..    +-.+.++||..+    .++|+++||+=.|++.+|++|+.
T Consensus       284 ~~npeki~~Lk~~a~~v~s~l~ks~v~~~qacfLP~s----n~tg~PvIget~----sg~yVaagHscWGItnaPaTG~~  355 (380)
T KOG2852|consen  284 FVNPEKIIELKEMADLVSSELTKSNVLDAQACFLPTS----NITGIPVIGETK----SGVYVAAGHSCWGITNAPATGKC  355 (380)
T ss_pred             eeCHHHHHHHHHHHHHhhhhhccchhhhhhhcccccc----CCCCCceEeecC----CceEEeecccccceecCcchhHH
Confidence            6788899999999999889998888765555555553    224678999876    39999999999999999999999


Q ss_pred             HHHHHh
Q 026314          234 VAAKFL  239 (240)
Q Consensus       234 va~~i~  239 (240)
                      |||+|+
T Consensus       356 mAElll  361 (380)
T KOG2852|consen  356 MAELLL  361 (380)
T ss_pred             HHHHHh
Confidence            999986

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.69  E-value=3.1e-06  Score=72.09  Aligned_cols=195  Identities=15%  Similarity=0.146  Sum_probs=107.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      .|.+.+++.|++++.+++|+++...++++++....+              ..+++||.||.|.|.++. +.+++ +... 
T Consensus        96 ~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~a~~vv~a~G~~s~-~~~~~-~~~~-  158 (295)
T TIGR02032        96 QLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGG--------------EGTVTAKIVIGADGSRSI-VAKKL-GLRK-  158 (295)
T ss_pred             HHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCc--------------cEEEEeCEEEECCCcchH-HHHhc-CCCC-
Confidence            467888899999999999999988888776554332              127999999999999874 77766 3332 


Q ss_pred             cCCCceeeceeEEEEcCCCC-CCccc--eeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314           82 FIPPAYYARGCYFSLANTKV-APFKH--LIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~-~~~~~--~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                       .+ .....+....+..+.. ...+.  ..+..........++.|..++++.+|.....            ..    ...
T Consensus       159 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~------------~~----~~~  220 (295)
T TIGR02032       159 -EP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRS------------AE----EGE  220 (295)
T ss_pred             -CC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeecc------------CC----CCC
Confidence             11 0112222222322110 01111  1111100011224667776676777643211            10    123


Q ss_pred             hHHHHHHHHhhhCCCCCCCCccccccccCCeecCC--CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314          159 RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP--RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA  236 (240)
Q Consensus       159 ~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~--~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~  236 (240)
                      +.+..++...+.+|.+....+.+.+.+..|.....  ...++-++||..-     +.+..  +.|.|+.+|---|.++|+
T Consensus       221 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA-----~~~~P--~~g~G~~~a~~~a~~aa~  293 (295)
T TIGR02032       221 DLKKYLKDFLARRPELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAA-----GHVKP--LTGEGIYYAMRSGDVAAE  293 (295)
T ss_pred             CHHHHHHHHHHhCcccccCcEEeeeceeeccCCCCCccccCCEEEEeccc-----CCCCC--ccCCcHHHHHHHHHHHHh
Confidence            34555555556678887777766666666653111  1112223445432     22222  456789999888888887


Q ss_pred             HH
Q 026314          237 KF  238 (240)
Q Consensus       237 ~i  238 (240)
                      .|
T Consensus       294 ~~  295 (295)
T TIGR02032       294 VI  295 (295)
T ss_pred             hC
Confidence            53

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02697 lycopene epsilon cyclase

Probab=98.45  E-value=1.2e-05  Score=74.98  Aligned_cols=193  Identities=9%  Similarity=0.017  Sum_probs=103.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh-cCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF-IGLD   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~-~~~~   79 (240)
                      .|.+.+.+.|+++ .+++|+++...++++. +.+.+|.               +++|+.||.|.|.|+..+.... +...
T Consensus       197 ~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~---------------~i~A~lVI~AdG~~S~rl~~~~~~~~~  260 (529)
T PLN02697        197 ELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGR---------------VIPCRLATVASGAASGRLLQYEVGGPR  260 (529)
T ss_pred             HHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCc---------------EEECCEEEECCCcChhhhhccccCCCC
Confidence            4677788899998 5789999988777765 4455552               7999999999999996554421 1112


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeec------C-----CCC-CCCeeEEEeecCCcEEE-cCCccccCCcccccc
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYP------I-----PED-GGLGVHVTLDLDGQIKF-GPDVEWIDGIDDTLS  146 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~------~-----p~~-~~~~~~~~~~~~g~~~~-G~~~~~~~~~~~~~~  146 (240)
                      ..    .....|..+.++..... .+..++.      .     ... ....+|+.|..++++++ +..  ....      
T Consensus       261 ~~----~Q~a~Gi~ve~~~~~~d-~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~~~~~VE~T~--l~~~------  327 (529)
T PLN02697        261 VC----VQTAYGVEVEVENNPYD-PSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSSTRVFFEETC--LASK------  327 (529)
T ss_pred             cc----cEEEEEEEEEecCCCCC-cchheeeccccccccccccccCCCceEEEEeecCCCeEEEEEee--eccC------
Confidence            22    33378888887642111 1111110      0     000 01124667776667777 331  1000      


Q ss_pred             cccccccccchh-hHHHHHHHHhhhCCCCCCCCccccccccCCeecCC-CCCCCCeEEecCCCCCCCCEEEEeCCCCchH
Q 026314          147 FLNRFDYSVNAN-RAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-RQSPIDFVIQGDDTHGVPGLVNLFGIESPGL  224 (240)
Q Consensus       147 ~~~~~~~~~~~~-~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~  224 (240)
                            ...+.+ -.+++.+++.+.  .+....+.+.=.|+.|+..+. ..+.+-..+|.     ..++++-+  .|.|+
T Consensus       328 ------~~l~~~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm~g~~~~~~~~vl~vG~-----AAG~vhPs--TGy~v  392 (529)
T PLN02697        328 ------DAMPFDLLKKRLMSRLETM--GIRILKTYEEEWSYIPVGGSLPNTEQKNLAFGA-----AASMVHPA--TGYSV  392 (529)
T ss_pred             ------CCCCHHHHHHHHHHHHHhC--CCCcceEEEEEeeeecCCCCCcccCCCeeEeeh-----hhcCCCCc--hhhhH
Confidence                  001112 233444444442  455566666666777873221 22222333443     23555432  44556


Q ss_pred             ----hhhHHHHHHHHHHH
Q 026314          225 ----TSSMAIAEYVAAKF  238 (240)
Q Consensus       225 ----t~ap~~g~~va~~i  238 (240)
                          ..||..|+.+++.+
T Consensus       393 ~~~l~~A~~~A~~ia~~l  410 (529)
T PLN02697        393 VRSLSEAPKYASVIARIL  410 (529)
T ss_pred             HHHHHhHHHHHHHHHHHh
Confidence                55566666666554

>PRK06185 hypothetical protein; Provisional

Probab=98.41  E-value=2.8e-05  Score=69.86  Aligned_cols=140  Identities=16%  Similarity=0.077  Sum_probs=78.1

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcC
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG   77 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~   77 (240)
                      .|.+.+++. |++++++++|++++..++++. |++  ++|              +.+++||.||.|.|.|+. +.+++ +
T Consensus       113 ~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g--------------~~~i~a~~vI~AdG~~S~-vr~~~-g  176 (407)
T PRK06185        113 FLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDG--------------PGEIRADLVVGADGRHSR-VRALA-G  176 (407)
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCC--------------cEEEEeCEEEECCCCchH-HHHHc-C
Confidence            345566654 899999999999998887653 443  333              136999999999999985 77777 4


Q ss_pred             CCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314           78 LDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA  157 (240)
Q Consensus        78 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .+....+    .++..+.+..+.........+....+ ...+.+.|.. +.+.++.....            ........
T Consensus       177 i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~llP~~-~~~~i~~~~~~------------~~~~~~~~  238 (407)
T PRK06185        177 LEVREFG----APMDVLWFRLPREPDDPESLMGRFGP-GQGLIMIDRG-DYWQCGYVIPK------------GGYAALRA  238 (407)
T ss_pred             CCccccC----CCceeEEEecCCCCCCCcccceEecC-CcEEEEEcCC-CeEEEEEEecC------------CCchhhhh
Confidence            4544344    45555544322111100001111111 1223455543 55555432211            11112234


Q ss_pred             hhHHHHHHHHhhhCCCCC
Q 026314          158 NRAERFYPEIRKYYPDLR  175 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P~l~  175 (240)
                      ...+.+.+.+.+.+|.+.
T Consensus       239 ~~~~~~~~~~~~~~p~~~  256 (407)
T PRK06185        239 AGLEAFRERVAELAPELA  256 (407)
T ss_pred             hhHHHHHHHHHHhCccHH
Confidence            456778888888888753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.38  E-value=1.7e-05  Score=72.09  Aligned_cols=57  Identities=19%  Similarity=0.280  Sum_probs=47.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|.+.|++.|++|+++++|++++.+++++. |.++++                +++|+.||.|.|.++ .|++.+
T Consensus       113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~----------------~i~A~~VI~A~G~~s-~l~~~l  170 (428)
T PRK10157        113 WLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGD----------------VIEAKTVILADGVNS-ILAEKL  170 (428)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCc----------------EEECCEEEEEeCCCH-HHHHHc
Confidence            578899999999999999999988777765 554333                799999999999975 677776

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.34  E-value=3.1e-05  Score=69.16  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      .|.+.+++.|++++ .++|+.+... ++.+.|++++|.               +++|+.||.|.|.++ .+.....+...
T Consensus        90 ~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~---------------~~~a~~VI~A~G~~s-~~~~~~~~~~~  152 (388)
T TIGR01790        90 ELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQ---------------RIQARLVIDARGFGP-LVQYVRFPLNV  152 (388)
T ss_pred             HHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCC---------------EEEeCEEEECCCCch-hcccccCCCCc
Confidence            46677888899997 5689998877 556778887763               799999999999997 33221111122


Q ss_pred             ccCCCceeeceeEEEEcC
Q 026314           81 VFIPPAYYARGCYFSLAN   98 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~   98 (240)
                      .    +....|..+.++.
T Consensus       153 ~----~q~~~G~~~~~~~  166 (388)
T TIGR01790       153 G----FQVAYGVEARLSR  166 (388)
T ss_pred             e----EEEEEEEEEEEcC
Confidence            2    2226777777753

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.23  E-value=5.7e-05  Score=67.62  Aligned_cols=58  Identities=10%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|.+++++.|++++++++|++++..++++.|++++|.               +++||.||.|.|.|+ .+.+.+
T Consensus       118 ~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vV~AdG~~S-~vr~~~  175 (392)
T PRK08773        118 RLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGR---------------RLEAALAIAADGAAS-TLRELA  175 (392)
T ss_pred             HHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hHHHhh
Confidence            4677788899999999999999988888888887663               799999999999999 688877

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.14  E-value=0.00014  Score=64.49  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+.+.| ++++.+++|++++..++++.|++++|.               +++||.||.|.|.++. +.+.+
T Consensus       111 ~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~vi~adG~~S~-vr~~l  169 (385)
T TIGR01988       111 ALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQ---------------QLRARLLVGADGANSK-VRQLA  169 (385)
T ss_pred             HHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCC---------------EEEeeEEEEeCCCCCH-HHHHc
Confidence            4677888888 999999999999988888888887773               6999999999999884 66766

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.13  E-value=8.9e-06  Score=73.30  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=51.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~~   75 (240)
                      +|.+.++++|++|+.+++|++++.++++++ |.|+++.             ...++||+||+|+|.| +..|.+.+
T Consensus       268 aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~-------------~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       268 ALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHR-------------DIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             HHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCc-------------cceEECCEEEEccCCCcCHHHHhhc
Confidence            688899999999999999999999888876 6765541             1279999999999999 99998876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.11  E-value=0.00013  Score=65.09  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|.+.++++| ++++ +++|++++..++.+.|++++|.               +++||.||.|.|.|+. +.+.+ +.+.
T Consensus       116 ~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~adG~~S~-vr~~~-~~~~  177 (388)
T PRK07608        116 ALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQ---------------VLRADLVVGADGAHSW-VRSQA-GIKA  177 (388)
T ss_pred             HHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCC---------------EEEeeEEEEeCCCCch-HHHhc-CCCc
Confidence            4677888888 9999 8999999888888888887762               6999999999999986 77776 3343


Q ss_pred             c
Q 026314           81 V   81 (240)
Q Consensus        81 ~   81 (240)
                      .
T Consensus       178 ~  178 (388)
T PRK07608        178 E  178 (388)
T ss_pred             c
Confidence            3

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.09  E-value=0.00037  Score=62.27  Aligned_cols=188  Identities=15%  Similarity=0.142  Sum_probs=107.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCcc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVF   82 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~~   82 (240)
                      +.+.+. .+..++.+++|++|+..++.+.|++++|.               +++|+.||.|.|..+. .     +.....
T Consensus        93 l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~a~~VvDa~g~~~~-~-----~~~~~~  150 (374)
T PF05834_consen   93 LLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGR---------------TIRARVVVDARGPSSP-K-----ARPLGL  150 (374)
T ss_pred             HHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCC---------------EEEeeEEEECCCcccc-c-----cccccc
Confidence            456666 44456678999999998887888888873               7999999999996544 1     112222


Q ss_pred             CCCceeeceeEEEEcCCCCCCccce--eecCCCC-CC-CeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314           83 IPPAYYARGCYFSLANTKVAPFKHL--IYPIPED-GG-LGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        83 ~p~~~~~~g~~~~~~~~~~~~~~~~--i~~~p~~-~~-~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +.    ..|..+.++.+...+-...  -|.++.. .. ..+|+.|...++.++..|. +..            ....+.+
T Consensus       151 Q~----f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~-fs~------------~~~~~~~  213 (374)
T PF05834_consen  151 QH----FYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETS-FSP------------RPALPEE  213 (374)
T ss_pred             ce----eEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEE-EcC------------CCCCCHH
Confidence            23    6777777654311111111  1223332 22 2356778777888887553 211            1112222


Q ss_pred             hH-HHHHHHHhhhCCCCCCCCccccccccCCeecCC---CCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          159 RA-ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP---RQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       159 ~~-~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                      .. +++.+++.+  -.+...+|.+.-.|+.|++..+   ....+-..||..     .|.+..+  .|.+|..+...++.+
T Consensus       214 ~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~a-----gG~v~Ps--TGYs~~~~~~~a~~i  284 (374)
T PF05834_consen  214 ELKARLRRYLER--LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTA-----GGMVKPS--TGYSFARIQRQADAI  284 (374)
T ss_pred             HHHHHHHHHHHH--cCCCceeEEEeecceeecccCCCccccCCCeeeEEcc-----ccCCCCc--ccHHHHHHHHHHHHH
Confidence            33 344455544  4677778888889999994322   112222234532     3555432  345577766667777


Q ss_pred             HHHH
Q 026314          235 AAKF  238 (240)
Q Consensus       235 a~~i  238 (240)
                      |+.+
T Consensus       285 a~~l  288 (374)
T PF05834_consen  285 ADAL  288 (374)
T ss_pred             HHHH
Confidence            6654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK10015 oxidoreductase; Provisional

Probab=98.06  E-value=0.00024  Score=64.65  Aligned_cols=57  Identities=25%  Similarity=0.407  Sum_probs=46.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|.+.|++.|++++.+++|+++..+++++. |.+.+.                +++|+.||.|.|.++ .+++.+
T Consensus       113 ~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~----------------~i~A~~VI~AdG~~s-~v~~~l  170 (429)
T PRK10015        113 WLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDD----------------ILEANVVILADGVNS-MLGRSL  170 (429)
T ss_pred             HHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCe----------------EEECCEEEEccCcch-hhhccc
Confidence            578889999999999999999988777775 555433                799999999999865 466666

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.05  E-value=0.00027  Score=62.81  Aligned_cols=58  Identities=9%  Similarity=0.072  Sum_probs=48.9

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+.+ .|++++.+++|++++..+++++|++++|.               +++||.||.|.|.|+. +.+++
T Consensus       110 ~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vV~AdG~~S~-vr~~l  168 (382)
T TIGR01984       110 ALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQ---------------QLRAKLLIAADGANSK-VRELL  168 (382)
T ss_pred             HHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCChH-HHHHc
Confidence            46677777 49999999999999988888888887662               6999999999999975 77777

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.98  E-value=0.00037  Score=62.25  Aligned_cols=57  Identities=18%  Similarity=0.256  Sum_probs=47.1

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+.+ .|++++++++|+++...+++|.|+++++.               +++||.||.|.|.|+. +.+.+
T Consensus       118 l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr~~~  175 (395)
T PRK05732        118 LFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGE---------------TLTGRLLVAADGSHSA-LREAL  175 (395)
T ss_pred             HHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCChh-hHHhh
Confidence            4555555 48999999999999888888888887762               6999999999999985 77777

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=97.97  E-value=0.00093  Score=60.15  Aligned_cols=59  Identities=25%  Similarity=0.416  Sum_probs=48.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|++.|++.|++++..+.|+.+...++++.+.+..+.              .+++|+.||.|.|. ...+++.+
T Consensus       100 ~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~--------------~e~~a~~vI~AdG~-~s~l~~~l  158 (396)
T COG0644         100 WLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD--------------DEVRAKVVIDADGV-NSALARKL  158 (396)
T ss_pred             HHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC--------------EEEEcCEEEECCCc-chHHHHHh
Confidence            6899999999999999999999999887764443331              28999999999998 55677777

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.97  E-value=0.0012  Score=59.24  Aligned_cols=65  Identities=11%  Similarity=0.203  Sum_probs=47.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|.+.|++++. +.|+++...++++.|++.++..       .+.+++.+++||.||.|.|.++ .+.+.+
T Consensus        97 ~L~~~a~~~G~~v~~-~~v~~v~~~~~~~~v~~~~~~~-------~~~~~~~~i~a~~VI~AdG~~S-~v~r~l  161 (388)
T TIGR02023        97 YLRERAQKAGAELIH-GLFLKLERDRDGVTLTYRTPKK-------GAGGEKGSVEADVVIGADGANS-PVAKEL  161 (388)
T ss_pred             HHHHHHHhCCCEEEe-eEEEEEEEcCCeEEEEEEeccc-------cCCCcceEEEeCEEEECCCCCc-HHHHHc
Confidence            477888899999986 4699998888888776543200       0012334799999999999987 466766

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02463 lycopene beta cyclase

Probab=97.95  E-value=0.00046  Score=63.15  Aligned_cols=52  Identities=17%  Similarity=0.155  Sum_probs=43.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.+.+.|++++ .++|++|+..++++.|++++|.               +++||.||.|.|..+.
T Consensus       119 ~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~---------------~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        119 KMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGV---------------KIQASLVLDATGFSRC  170 (447)
T ss_pred             HHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECcCCCcC
Confidence            35667778899997 5899999988888889888773               7999999999998764

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.93  E-value=0.00055  Score=61.16  Aligned_cols=58  Identities=14%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++. |++++++++|++++..++++.|+++++.               +++||.||.|.|.|+. +.+.+
T Consensus       117 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vR~~~  175 (391)
T PRK08020        117 ALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGE---------------EIQAKLVIGADGANSQ-VRQMA  175 (391)
T ss_pred             HHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCC---------------EEEeCEEEEeCCCCch-hHHHc
Confidence            355666666 9999999999999888888888887663               7999999999999995 77776

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.86  E-value=0.00037  Score=62.41  Aligned_cols=58  Identities=22%  Similarity=0.253  Sum_probs=50.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++++.+++|++++..++.+.|++++|.               +++||.||.|.|.++. +.+.+
T Consensus       116 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~AdG~~S~-vr~~~  173 (403)
T PRK07333        116 ALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS---------------VLEARLLVAADGARSK-LRELA  173 (403)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEEcCCCChH-HHHHc
Confidence            4677888899999999999999988888888887763               7999999999999986 77777

>PRK07233 hypothetical protein; Provisional

Probab=97.72  E-value=0.0064  Score=54.79  Aligned_cols=57  Identities=18%  Similarity=0.140  Sum_probs=43.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|++.++++|++|+++++|++|+..++++.+.+.++.               +++||.||+|+.+  ..+.+++
T Consensus       203 ~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~---------------~~~ad~vI~a~p~--~~~~~ll  259 (434)
T PRK07233        203 ALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGE---------------EEDFDAVISTAPP--PILARLV  259 (434)
T ss_pred             HHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCc---------------eEECCEEEECCCH--HHHHhhc
Confidence            4677788889999999999999988887764443442               7999999999986  3344443

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.70  E-value=8.9e-05  Score=59.89  Aligned_cols=51  Identities=25%  Similarity=0.255  Sum_probs=40.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |...++++|.+++++++|+++++.+++|.|++.++.               +++|++||+|+|.++
T Consensus        88 l~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~---------------~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   88 LQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGR---------------TIRADRVVLATGHYS  138 (203)
T ss_dssp             HHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS----------------EEEEEEEEE---SSC
T ss_pred             HHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecc---------------eeeeeeEEEeeeccC
Confidence            556788899999999999999999999999998872               799999999999865

...

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.65  E-value=0.00079  Score=60.53  Aligned_cols=58  Identities=14%  Similarity=0.150  Sum_probs=50.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|.+.+++.|++++++++|++++..+++|.|++++|.               +++||.||.|.|.|+ .+.+.+
T Consensus       117 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vVgAdG~~S-~vR~~l  174 (405)
T PRK05714        117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR---------------QLRAPLVVAADGANS-AVRRLA  174 (405)
T ss_pred             HHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCc-hhHHhc
Confidence            4566777889999999999999988888888887763               799999999999999 677777

>PLN02612 phytoene desaturase

Probab=97.62  E-value=0.0069  Score=57.20  Aligned_cols=50  Identities=8%  Similarity=0.118  Sum_probs=39.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +|++..+++|++|+++++|++|+..+++ + .|++.+|+               .++||+||.|+.+
T Consensus       313 ~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~---------------~~~ad~VI~a~p~  364 (567)
T PLN02612        313 PIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGS---------------VVEGDVYVSATPV  364 (567)
T ss_pred             HHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCc---------------EEECCEEEECCCH
Confidence            4566667789999999999999986554 3 36776663               6999999999865

>PRK08244 hypothetical protein; Provisional

Probab=97.62  E-value=0.0045  Score=57.25  Aligned_cols=61  Identities=18%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++++.+++|++++..+++++|+..+..           + +.+++||.||.|.|.+|. +.+.+
T Consensus       105 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~-----------g-~~~i~a~~vVgADG~~S~-vR~~l  165 (493)
T PRK08244        105 VLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPD-----------G-LRTLTSSYVVGADGAGSI-VRKQA  165 (493)
T ss_pred             HHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCC-----------c-cEEEEeCEEEECCCCChH-HHHhc
Confidence            3566778889999999999999988888776553210           0 237999999999999984 67766

>PRK06834 hypothetical protein; Provisional

Probab=97.58  E-value=0.00042  Score=64.16  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=51.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      .|.+.+++.|++|+++++|++++..++++.|++.+|.               +++||.||.|.|.+| .+.+++ +++.+
T Consensus       105 ~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~---------------~i~a~~vVgADG~~S-~vR~~l-gi~~~  167 (488)
T PRK06834        105 ILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGR---------------TLRAQYLVGCDGGRS-LVRKAA-GIDFP  167 (488)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCCCC-CcHhhc-CCCCC
Confidence            3567778889999999999999998888888876652               799999999999999 477777 44433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.54  E-value=0.0059  Score=54.92  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=45.7

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+.+. |++++++++|++++..++++.|+..+++            .+.+++||.||-|-|.++ .+.+.+
T Consensus       127 L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~------------~~~~i~adlvIgADG~~S-~vR~~~  187 (415)
T PRK07364        127 LQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEG------------KQQTLQSKLVVAADGARS-PIRQAA  187 (415)
T ss_pred             HHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCC------------cceEEeeeEEEEeCCCCc-hhHHHh
Confidence            45556565 7999999999999888888877765331            123699999999999988 566666

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.53  E-value=0.00026  Score=66.89  Aligned_cols=60  Identities=17%  Similarity=0.035  Sum_probs=45.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChHHHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAPALAK   73 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~~l~~   73 (240)
                      +|.+.|+++|++|+++++|+.+..+++++. |.....            +.+..+.| +.||+|+|.|+..+..
T Consensus       222 ~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~------------~~~~~i~a~k~VVlAtGg~~~n~~~  283 (581)
T PRK06134        222 RLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETP------------GGLQEIRARKGVVLAAGGFPHDPAR  283 (581)
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEEC------------CcEEEEEeCCEEEEcCCCcccCHHH
Confidence            577889999999999999999987777654 443221            11346889 9999999999975543

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.52  E-value=0.013  Score=54.09  Aligned_cols=56  Identities=18%  Similarity=0.214  Sum_probs=40.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +|++.++++|++|+++++|++|..++++.+ |.+.++..          +...+++||.||.++.++
T Consensus       237 aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~----------~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       237 RLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRK----------QEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCC----------CceEEEECCEEEECCCHH
Confidence            577888889999999999999998877532 43333210          111268999999999874

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02730 carot_isom carotene isomerase

Probab=97.50  E-value=0.00028  Score=65.35  Aligned_cols=53  Identities=19%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|++.++++|++|+++++|++|..+++++ .|++++|.               +++||.||+|+|+|..
T Consensus       234 ~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~---------------~~~ad~vV~a~~~~~~  287 (493)
T TIGR02730       234 SLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGE---------------KIYAKRIVSNATRWDT  287 (493)
T ss_pred             HHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCC---------------EEEcCEEEECCChHHH
Confidence            57899999999999999999998877655 48887773               6999999999999864

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR00275 flavoprotein, HI0933 family

Probab=97.50  E-value=0.00081  Score=60.66  Aligned_cols=59  Identities=17%  Similarity=0.104  Sum_probs=49.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL   71 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l   71 (240)
                      .|.+.+++.|++++++++|++++..++.+.|+++++                ++.||.||+|+|.++          ..+
T Consensus       110 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~----------------~i~ad~VIlAtG~~s~p~~gs~G~g~~l  173 (400)
T TIGR00275       110 ALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGG----------------EYEADKVILATGGLSYPQLGSTGDGYEI  173 (400)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCc----------------EEEcCEEEECCCCcccCCCCCCcHHHHH
Confidence            467788889999999999999988777788887543                799999999999866          577


Q ss_pred             HHHhc
Q 026314           72 AKRFI   76 (240)
Q Consensus        72 ~~~~~   76 (240)
                      ++++|
T Consensus       174 a~~lG  178 (400)
T TIGR00275       174 AESLG  178 (400)
T ss_pred             HHHCC
Confidence            88773

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.49  E-value=0.0035  Score=55.89  Aligned_cols=58  Identities=14%  Similarity=0.168  Sum_probs=46.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+.++|...+.+++|++++..++++.|+++++.               +++||.||.|.|.++. +.+.+
T Consensus       116 ~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S~-vr~~~  173 (388)
T PRK07494        116 ALEARVAELPNITRFGDEAESVRPREDEVTVTLADGT---------------TLSARLVVGADGRNSP-VREAA  173 (388)
T ss_pred             HHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCC---------------EEEEeEEEEecCCCch-hHHhc
Confidence            4566777776444889999999988888988887663               7999999999999984 66766

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.42  E-value=0.0003  Score=63.66  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=41.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~   70 (240)
                      +|.+.++++|++|+++++|++|+..+++ +.|+++++.               ++.||.||+|+|.-|          -.
T Consensus       114 ~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~---------------~~~a~~vILAtGG~S~p~~GS~G~gy~  178 (409)
T PF03486_consen  114 ALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGG---------------EYEADAVILATGGKSYPKTGSDGSGYR  178 (409)
T ss_dssp             HHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTE---------------EEEESEEEE----SSSGGGT-SSHHHH
T ss_pred             HHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcc---------------cccCCEEEEecCCCCccccCCCcHHHH
Confidence            4677889999999999999999998887 789994332               899999999999754          56


Q ss_pred             HHHHh
Q 026314           71 LAKRF   75 (240)
Q Consensus        71 l~~~~   75 (240)
                      +++.+
T Consensus       179 ~a~~l  183 (409)
T PF03486_consen  179 IAKKL  183 (409)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            77777

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=97.42  E-value=0.014  Score=52.29  Aligned_cols=51  Identities=16%  Similarity=0.086  Sum_probs=39.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |++..+++|++|+++++|++|+..++++++.. .+|+               ++.||.||+|+-++.
T Consensus       203 l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~---------------~~~~d~vi~a~p~~~  254 (419)
T TIGR03467       203 ARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGE---------------TLPADAVVLAVPPRH  254 (419)
T ss_pred             HHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCc---------------cccCCEEEEcCCHHH
Confidence            45556678999999999999999888765432 2342               689999999987554

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=97.39  E-value=0.00051  Score=61.00  Aligned_cols=59  Identities=17%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL   71 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l   71 (240)
                      +|..++++.|++++++++|.+|++.+.+..|+|++|.               +|+||.+|+|+|.-|          -.+
T Consensus       116 ~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~---------------~i~~d~lilAtGG~S~P~lGstg~gy~i  180 (408)
T COG2081         116 ALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGE---------------TVKCDSLILATGGKSWPKLGSTGFGYPI  180 (408)
T ss_pred             HHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCC---------------EEEccEEEEecCCcCCCCCCCCchhhHH
Confidence            5778899999999999999999999888899999883               699999999999433          356


Q ss_pred             HHHh
Q 026314           72 AKRF   75 (240)
Q Consensus        72 ~~~~   75 (240)
                      ++.+
T Consensus       181 A~~~  184 (408)
T COG2081         181 ARQF  184 (408)
T ss_pred             HHHc
Confidence            6766

>PRK09126 hypothetical protein; Provisional

Probab=97.39  E-value=0.0061  Score=54.39  Aligned_cols=56  Identities=14%  Similarity=0.241  Sum_probs=44.8

Q ss_pred             hHHH-HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            4 QGEA-ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         4 ~~~A-~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .+++ +..|++|+++++|++++..++.+.|++++|.               +++||.||.|.|.++ .+.+.+
T Consensus       117 ~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~a~~vI~AdG~~S-~vr~~~  173 (392)
T PRK09126        117 YEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGR---------------RLTARLLVAADSRFS-ATRRQL  173 (392)
T ss_pred             HHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCC---------------EEEeCEEEEeCCCCc-hhhHhc
Confidence            3444 3469999999999999888888888877663               799999999999877 466666

>PRK11445 putative oxidoreductase; Provisional

Probab=97.35  E-value=0.068  Score=47.22  Aligned_cols=55  Identities=11%  Similarity=0.127  Sum_probs=43.4

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +.+.|++++.++.|++++..+++|.|++ ++|             +..+++||.||.|.|..| .+.+++
T Consensus       108 ~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g-------------~~~~i~a~~vV~AdG~~S-~vr~~l  163 (351)
T PRK11445        108 LIPASVEVYHNSLCRKIWREDDGYHVIFRADG-------------WEQHITARYLVGADGANS-MVRRHL  163 (351)
T ss_pred             HHhcCCEEEcCCEEEEEEEcCCEEEEEEecCC-------------cEEEEEeCEEEECCCCCc-HHhHHh
Confidence            4567999999999999998888888775 344             123699999999999977 466665

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.32  E-value=0.0013  Score=58.80  Aligned_cols=59  Identities=15%  Similarity=0.148  Sum_probs=46.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL   71 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l   71 (240)
                      +|..+++++|++|+++++|++|  +++++.|++..+.              .+++||.||+|+|.-+          -.+
T Consensus        91 ~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~--------------~~~~a~~vIlAtGG~s~p~~Gs~g~gy~l  154 (376)
T TIGR03862        91 AWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQ--------------STIEADAVVLALGGASWSQLGSDGAWQQV  154 (376)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCc--------------eEEecCEEEEcCCCccccccCCCcHHHHH
Confidence            5788999999999999999999  3445777775431              1699999999999854          467


Q ss_pred             HHHhc
Q 026314           72 AKRFI   76 (240)
Q Consensus        72 ~~~~~   76 (240)
                      ++.+|
T Consensus       155 a~~lG  159 (376)
T TIGR03862       155 LDQRG  159 (376)
T ss_pred             HHHCC
Confidence            88874

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.29  E-value=0.058  Score=50.62  Aligned_cols=60  Identities=15%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.++++ |++++++++|++++..++++.++....+            .+.+++||.||.|.|.++. +.+.+
T Consensus       131 L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~------------g~~~i~ad~vVgADG~~S~-vR~~l  191 (547)
T PRK08132        131 LVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPD------------GPYTLEADWVIACDGARSP-LREML  191 (547)
T ss_pred             HHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCC------------CcEEEEeCEEEECCCCCcH-HHHHc
Confidence            55666665 7999999999999988888775543221            1236999999999999986 77777

>PRK06847 hypothetical protein; Provisional

Probab=97.27  E-value=0.00082  Score=59.59  Aligned_cols=59  Identities=22%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++|+++++|++++..++++.|++.+|.               +++||.||.|.|.|+..-..++
T Consensus       112 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vI~AdG~~s~~r~~l~  170 (375)
T PRK06847        112 ILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGT---------------TGRYDLVVGADGLYSKVRSLVF  170 (375)
T ss_pred             HHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCC---------------EEEcCEEEECcCCCcchhhHhc
Confidence            4667788889999999999999988888888887763               7999999999999986654443

>PRK06184 hypothetical protein; Provisional

Probab=97.24  E-value=0.0059  Score=56.63  Aligned_cols=61  Identities=11%  Similarity=0.178  Sum_probs=47.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++|+.+++|++++..+++++++......            ..+++||.||.|.|.+|. +.+.+
T Consensus       114 ~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~------------~~~i~a~~vVgADG~~S~-vR~~l  174 (502)
T PRK06184        114 ILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG------------EETVRARYLVGADGGRSF-VRKAL  174 (502)
T ss_pred             HHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC------------eEEEEeCEEEECCCCchH-HHHhC
Confidence            36677888899999999999999888887765521100            127999999999999984 67777

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.20  E-value=0.0013  Score=55.77  Aligned_cols=68  Identities=22%  Similarity=0.137  Sum_probs=45.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      .|.+.|+++|++|+++++|+++..+++ ++. |.+.......   ..+ ..+..+++|+.||+|+|.|+.-...
T Consensus       109 ~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~---~g~-~~~~~~i~Ak~VI~ATG~~a~v~~~  178 (257)
T PRK04176        109 KLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEM---AGL-HVDPLTIEAKAVVDATGHDAEVVSV  178 (257)
T ss_pred             HHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccc---cCC-CCCcEEEEcCEEEEEeCCCcHHHHH
Confidence            478889999999999999999987655 443 4332110000   000 1134579999999999999975443

>PRK06126 hypothetical protein; Provisional

Probab=97.16  E-value=0.041  Score=51.58  Aligned_cols=62  Identities=11%  Similarity=0.191  Sum_probs=47.1

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+++. |++|+++++|++++..+++++++..+..          .|++.+++||.||.|.|.++. +.+.+
T Consensus       132 L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~----------~g~~~~i~ad~vVgADG~~S~-VR~~l  194 (545)
T PRK06126        132 LLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLD----------GGESLTIRADYLVGCDGARSA-VRRSL  194 (545)
T ss_pred             HHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECC----------CCcEEEEEEEEEEecCCcchH-HHHhc
Confidence            45566654 8999999999999988887776553311          133457999999999999984 77777

>PRK07190 hypothetical protein; Provisional

Probab=97.14  E-value=0.0037  Score=57.88  Aligned_cols=62  Identities=16%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      .|.+.++++|++++.+++|++++..++++.+++.+|+               +++|+.||.|.|.++ .+.+.+ +++.
T Consensus       114 ~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~---------------~v~a~~vVgADG~~S-~vR~~l-gi~f  175 (487)
T PRK07190        114 LLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGE---------------RIQSRYVIGADGSRS-FVRNHF-NVPF  175 (487)
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCc---------------EEEeCEEEECCCCCH-HHHHHc-CCCc
Confidence            3566788899999999999999988888877766552               799999999999976 566666 4443

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.10  E-value=0.0022  Score=57.80  Aligned_cols=61  Identities=20%  Similarity=0.096  Sum_probs=44.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA   72 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~   72 (240)
                      .|.+.++++|++|+++++|+++.++++++. |...+.          ..++.+.|.|+.||+|+|.++..+.
T Consensus       146 ~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~----------~~g~~~~i~A~aVIlAtGG~~~~~~  207 (417)
T PF00890_consen  146 ALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENP----------ADGEFVRIKAKAVILATGGFGGELL  207 (417)
T ss_dssp             HHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEET----------TTCEEEEEEESEEEE----BGGHHH
T ss_pred             HHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEEC----------CCCeEEEEeeeEEEeccCccccccc
Confidence            477889999999999999999999988775 554411          0134567999999999999997333

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08013 oxidoreductase; Provisional

Probab=97.07  E-value=0.034  Score=50.01  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=47.5

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++. |++++++++|++++..++.+.|+..+|.               +++||.||-|-|.+| .+.+.+
T Consensus       116 ~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~a~lvVgADG~~S-~vR~~~  174 (400)
T PRK08013        116 ALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS---------------MLTARLVVGADGANS-WLRNKA  174 (400)
T ss_pred             HHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC---------------EEEeeEEEEeCCCCc-HHHHHc
Confidence            356667775 8999999999999888888888877663               799999999999987 566666

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.02  E-value=0.064  Score=48.05  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|.+++.+.+ ++++++++|+.++.+++.+.|+.+ +|.               +++||.||-|=|.+| .+.+.+
T Consensus       109 ~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~---------------~~~a~llVgADG~~S-~vR~~~  168 (387)
T COG0654         109 ALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGE---------------TLDADLLVGADGANS-AVRRAA  168 (387)
T ss_pred             HHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCc---------------EEecCEEEECCCCch-HHHHhc
Confidence            5677788877 899999999999999988887776 662               799999999999876 445555

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.00  E-value=0.0022  Score=59.47  Aligned_cols=52  Identities=27%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|++.++++|++|+++++|++|..++++ +.|++++|.               +++||.||+|+++..
T Consensus       224 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~---------------~~~ad~VI~a~~~~~  276 (502)
T TIGR02734       224 AMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGE---------------RLDADAVVSNADLHH  276 (502)
T ss_pred             HHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCC---------------EEECCEEEECCcHHH
Confidence            5788899999999999999999988776 468887763               699999999999744

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.94  E-value=0.0033  Score=57.68  Aligned_cols=56  Identities=18%  Similarity=0.090  Sum_probs=42.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+.++++|++|+++++|+++..+++++. |.+.+.           .+....++|+.||+|+|.+.
T Consensus       136 ~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~-----------~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        136 ALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSA-----------AGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEcc-----------CCceEEEECCEEEECCCCCC
Confidence            467788999999999999999988777664 555311           01234689999999999875

>PRK08163 salicylate hydroxylase; Provisional

Probab=96.91  E-value=0.0025  Score=56.96  Aligned_cols=59  Identities=14%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+.+.| ++++++++|++++..++++.|++.+|.               +++||.||.|.|.|+..-..+.
T Consensus       114 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~~r~~~~  173 (396)
T PRK08163        114 SLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGN---------------RWTGDALIGCDGVKSVVRQSLV  173 (396)
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCC---------------EEecCEEEECCCcChHHHhhcc
Confidence            4667777775 899999999999988788888887763               6999999999999987654444

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.90  E-value=0.11  Score=47.68  Aligned_cols=66  Identities=17%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++.|++++.. .|+++...   ++.+.|++.+..      ..+..++..+++||.||-|-|.++ .+++.+
T Consensus       137 ~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~------~~~~~g~~~~v~a~~VIgADG~~S-~vrr~l  205 (450)
T PLN00093        137 FLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYD------SGSGAGTPKTLEVDAVIGADGANS-RVAKDI  205 (450)
T ss_pred             HHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEecc------ccccCCCccEEEeCEEEEcCCcch-HHHHHh
Confidence            5778899999999865 58887643   244555543210      001112234799999999999966 677776

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.84  E-value=0.098  Score=47.14  Aligned_cols=64  Identities=23%  Similarity=0.286  Sum_probs=42.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEE---eCCeEEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHL---EGNCMNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~---~~~~~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|++.|++.|++++..+ ++.++.   .++.+.|+.  .+.        +...+++.+++|+.||.|.|..+ .+.+.+
T Consensus        98 ~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~--------~~~~g~~~~i~a~~VIgADG~~S-~v~~~~  166 (398)
T TIGR02028        98 FLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDS--------GGPSGTRCTLEVDAVIGADGANS-RVAKEI  166 (398)
T ss_pred             HHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccc--------cccCCCccEEEeCEEEECCCcch-HHHHHh
Confidence            47788999999998775 777753   234455542  210        00012334799999999999977 677777

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.82  E-value=0.12  Score=47.45  Aligned_cols=47  Identities=11%  Similarity=0.125  Sum_probs=37.4

Q ss_pred             cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314           12 TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus        12 a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ++|+++++|+.|+..+++|.|++.+|.               ++.||.||+|+-  ...+.+++
T Consensus       239 ~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~a~p--~~~~~~ll  285 (463)
T PRK12416        239 TVVKKGAVTTAVSKQGDRYEISFANHE---------------SIQADYVVLAAP--HDIAETLL  285 (463)
T ss_pred             ccEEcCCEEEEEEEcCCEEEEEECCCC---------------EEEeCEEEECCC--HHHHHhhc
Confidence            589999999999998888988887662               689999999984  34444444

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=96.72  E-value=0.0058  Score=55.62  Aligned_cols=54  Identities=15%  Similarity=0.059  Sum_probs=41.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++|+++++|+++...  ++.+. |.+.++              ...+.|+.||+|+|.++.
T Consensus       128 ~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~--------------~~~i~ak~VIlAtGG~~~  184 (432)
T TIGR02485       128 ALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVG--------------THRITTQALVLAAGGLGA  184 (432)
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCC--------------cEEEEcCEEEEcCCCccc
Confidence            5778899999999999999999876  34443 554322              127999999999997764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=96.72  E-value=0.033  Score=52.21  Aligned_cols=61  Identities=10%  Similarity=0.151  Sum_probs=46.2

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+.+. |++|+.+++|++++..+++++|+..+.+           |++.+++||.||.|-|.+|. +.+.+
T Consensus       119 L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~-----------G~~~~i~ad~vVgADG~~S~-vR~~l  180 (538)
T PRK06183        119 LRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDAD-----------GQRETVRARYVVGCDGANSF-VRRTL  180 (538)
T ss_pred             HHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCC-----------CCEEEEEEEEEEecCCCchh-HHHHc
Confidence            44555554 9999999999999998888887765310           22347999999999999764 66666

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.71  E-value=0.0052  Score=58.16  Aligned_cols=56  Identities=11%  Similarity=-0.031  Sum_probs=43.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++++++++|+++..+++++. |.+.++            +++..+.| +.||+|+|.+..
T Consensus       226 aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~------------g~~~~i~A~~~VVlAtGg~~~  283 (578)
T PRK12843        226 RLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQG------------GVRRRIRARGGVVLATGGFNR  283 (578)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecC------------CeEEEEEccceEEECCCCccc
Confidence            477888999999999999999987677664 555333            22446886 689999999986

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=96.71  E-value=0.22  Score=45.38  Aligned_cols=45  Identities=18%  Similarity=0.090  Sum_probs=37.3

Q ss_pred             HHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            8 ENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         8 ~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++.+ ++|+++++|+.|...+++|+|++++|+               ++.||.||+|+-+.
T Consensus       233 ~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~~~ad~VI~t~P~~  278 (462)
T TIGR00562       233 KRLKLTKVYKGTKVTKLSHRGSNYTLELDNGV---------------TVETDSVVVTAPHK  278 (462)
T ss_pred             HHhccCeEEcCCeEEEEEecCCcEEEEECCCc---------------EEEcCEEEECCCHH
Confidence            3344 789999999999998888999887763               79999999998753

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02487 zeta-carotene desaturase

Probab=96.71  E-value=0.17  Score=47.94  Aligned_cols=54  Identities=7%  Similarity=0.076  Sum_probs=39.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC--Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG--NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~--~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +++..+++|++|+++++|+.|+.++  ++   + .|++.++.            ....+.||.||.|+++|.
T Consensus       301 l~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~------------~~~~~~aD~VV~A~p~~~  360 (569)
T PLN02487        301 IAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKAT------------EKEIVKADAYVAACDVPG  360 (569)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCC------------CceEEECCEEEECCCHHH
Confidence            5667789999999999999999873  22   3 35653111            112588999999999874

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=96.69  E-value=0.0077  Score=56.94  Aligned_cols=57  Identities=18%  Similarity=0.106  Sum_probs=43.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChHHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAPAL   71 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~~l   71 (240)
                      |.+.++++|++|+++++|+.+..+++++. |.+.++.            .+..+.++ .||+|+|.|+..+
T Consensus       220 L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~------------~~~~i~a~k~VVlAtGg~~~n~  278 (574)
T PRK12842        220 LAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAG------------GERRITARRGVVLACGGFSHDL  278 (574)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCC------------ceEEEEeCCEEEEcCCCccchH
Confidence            66778899999999999999998877664 5553321            12358885 7999999998443

>PRK07121 hypothetical protein; Validated

Probab=96.67  E-value=0.0057  Score=56.67  Aligned_cols=56  Identities=18%  Similarity=0.038  Sum_probs=42.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~   69 (240)
                      .|.+.++++|++|+++++|+++..++ +++. |...+.            +++..+.| +.||+|+|.|+.
T Consensus       182 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~------------~~~~~i~a~k~VVlAtGg~~~  240 (492)
T PRK07121        182 PLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRY------------GETVAIRARKGVVLAAGGFAM  240 (492)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeC------------CcEEEEEeCCEEEECCCCcCc
Confidence            46778899999999999999998764 4553 554332            22446899 999999998874

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.67  E-value=0.072  Score=47.58  Aligned_cols=175  Identities=16%  Similarity=0.137  Sum_probs=93.3

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCccCCCceeec
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNVFIPPAYYAR   90 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~~~p~~~~~~   90 (240)
                      +..++++++|+++  ..+++.+  .+|.               +++|+.||.|.|..+.....      ...+-    ..
T Consensus       100 ~~~i~~~~~V~~v--~~~~v~l--~dg~---------------~~~A~~VI~A~G~~s~~~~~------~~~Q~----f~  150 (370)
T TIGR01789       100 PEGVILGRKAVGL--DADGVDL--APGT---------------RINARSVIDCRGFKPSAHLK------GGFQV----FL  150 (370)
T ss_pred             cccEEecCEEEEE--eCCEEEE--CCCC---------------EEEeeEEEECCCCCCCcccc------ceeeE----EE
Confidence            4447879999988  3455655  4452               79999999999987542221      11122    67


Q ss_pred             eeEEEEcCCCCCCccce-e--ecCCCCCC-CeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH-HHHHH
Q 026314           91 GCYFSLANTKVAPFKHL-I--YPIPEDGG-LGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA-ERFYP  165 (240)
Q Consensus        91 g~~~~~~~~~~~~~~~~-i--~~~p~~~~-~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  165 (240)
                      |..+.+..+ .. .+.. +  +.++...+ ..+|+.|-.++++++..+. +.+            ...++.+.+ +++.+
T Consensus       151 G~~~r~~~p-~~-~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~-~s~------------~~~l~~~~l~~~l~~  215 (370)
T TIGR01789       151 GREMRLQEP-HG-LENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTY-YAD------------DPLLDRNALSQRIDQ  215 (370)
T ss_pred             EEEEEEcCC-CC-CCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEe-ccC------------CCCCCHHHHHHHHHH
Confidence            888887644 21 2221 1  22222122 2245577767778874321 111            011222332 34445


Q ss_pred             HHhhhCCCCCCCCccccccccCCeecCC--C---CCCCCeE-EecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314          166 EIRKYYPDLRDGSLQPSYAGIRPKLSGP--R---QSPIDFV-IQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  238 (240)
Q Consensus       166 ~~~~~~P~l~~~~i~~~~aG~r~~~~~~--~---~~~~~~i-i~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i  238 (240)
                      ++.+.  .+...++.+.-.|+.|++.+.  .   ...+..+ ||..     .+.++-  ..|.||..+-..++.+++.+
T Consensus       216 ~~~~~--g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~A-----Ag~~~P--~tGyg~~~a~~~a~~la~~~  285 (370)
T TIGR01789       216 YARAN--GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLR-----AGLTHP--TTGYSLPVAVENADALAAQP  285 (370)
T ss_pred             HHHHh--CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecc-----cccccc--cccccHHHHHHHHHHHHhcc
Confidence            54443  556566666666888885420  0   1111122 3432     244443  24567888888888887654

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.62  E-value=0.0066  Score=56.50  Aligned_cols=55  Identities=15%  Similarity=0.059  Sum_probs=42.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++|+++++|+.+...++++. |..  .++             +..++.|+.||+|+|.|+.
T Consensus       195 ~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g-------------~~~~i~a~~VVlAtGG~~~  252 (506)
T PRK06481        195 GLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGK-------------ETKTISSKAVVVTTGGFGA  252 (506)
T ss_pred             HHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCC-------------eEEEEecCeEEEeCCCccc
Confidence            467788899999999999999987767653 433  322             2347999999999998764

>TIGR01810 betA choline dehydrogenase

Probab=96.61  E-value=0.006  Score=57.09  Aligned_cols=62  Identities=24%  Similarity=0.165  Sum_probs=45.2

Q ss_pred             hhHHHH-HCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-ChHHHHHHh
Q 026314            3 VQGEAE-NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF   75 (240)
Q Consensus         3 l~~~A~-~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-wa~~l~~~~   75 (240)
                      +...|+ +.|++|++++.|+.|..++++++ |+..++.           +....+.++.||+|||+ ++.+|+.+.
T Consensus       199 ~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~-----------~~~~~~~ak~VIlaAGai~SP~LLl~S  263 (532)
T TIGR01810       199 YLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGG-----------RKEHTEANKEVILSAGAINSPQLLQLS  263 (532)
T ss_pred             HhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCC-----------cEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence            455565 44799999999999998877654 6553331           11223689999999999 888888765

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK07588 hypothetical protein; Provisional

Probab=96.61  E-value=0.006  Score=54.55  Aligned_cols=48  Identities=13%  Similarity=0.049  Sum_probs=41.4

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      ...|++++++++|++++..++++.|++++|+               +++||.||.|.|.+|.-
T Consensus       113 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~d~vIgADG~~S~v  160 (391)
T PRK07588        113 IDGQVETIFDDSIATIDEHRDGVRVTFERGT---------------PRDFDLVIGADGLHSHV  160 (391)
T ss_pred             hhcCeEEEeCCEEeEEEECCCeEEEEECCCC---------------EEEeCEEEECCCCCccc
Confidence            3458999999999999988888988888773               68999999999998844

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=96.53  E-value=0.0064  Score=53.90  Aligned_cols=50  Identities=22%  Similarity=0.166  Sum_probs=41.0

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ...+...|.+|+++++|+.|+.++++++|.+.+|.               +++||.||+|+....
T Consensus       216 ~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~---------------~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  216 ALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGE---------------TIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSS---------------EEEESEEEE-S-HHH
T ss_pred             HHHHhhcCceeecCCcceeccccccccccccccce---------------EEecceeeecCchhh
Confidence            44555568899999999999999999999998883               799999999998644

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.53  E-value=0.0075  Score=54.89  Aligned_cols=55  Identities=16%  Similarity=0.001  Sum_probs=41.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.++++|++|+++++|+++...+ +++. |.  +.++             +...+.++.||+|+|.|+.
T Consensus       135 ~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-------------~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       135 KLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGK-------------GIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCC-------------eEEEEecceEEEecCCCCC
Confidence            46778899999999999999998754 4442 33  3333             2235789999999999986

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.47  E-value=0.0094  Score=54.85  Aligned_cols=55  Identities=18%  Similarity=-0.009  Sum_probs=43.1

Q ss_pred             hhHHHHHCCcE--EEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTT--FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~--i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |...|+..|.+  |+++++|+++++.+++|.|++.++.           +.+.+..+|.||+|+|.++
T Consensus       117 L~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~-----------~~~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        117 LQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSG-----------GFSKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             HHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCC-----------CceEEEEcCEEEEeccCCC
Confidence            45667788987  9999999999998889998876441           1123567999999999865

>PRK07045 putative monooxygenase; Reviewed

Probab=96.44  E-value=0.45  Score=42.39  Aligned_cols=55  Identities=13%  Similarity=0.222  Sum_probs=41.4

Q ss_pred             hhHHHH-HCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314            3 VQGEAE-NHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         3 l~~~A~-~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      |.+.+. ..|++++++++|++++..+++  +.|++++|.               +++||.||-|-|.+| .+.+
T Consensus       112 L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~---------------~~~~~~vIgADG~~S-~vR~  169 (388)
T PRK07045        112 LLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE---------------RVAPTVLVGADGARS-MIRD  169 (388)
T ss_pred             HHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC---------------EEECCEEEECCCCCh-HHHH
Confidence            444544 458999999999999886654  357777663               799999999999877 3444

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.42  E-value=0.016  Score=51.60  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=47.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++++++++|+++...++.+.|++++|.               +++||.||+|+|...+ .+++.+
T Consensus       189 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vI~a~G~~p~~~l~~~~  247 (377)
T PRK04965        189 LQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGR---------------SIEVDAVIAAAGLRPNTALARRA  247 (377)
T ss_pred             HHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCc---------------EEECCEEEECcCCCcchHHHHHC
Confidence            445667889999999999999877777778877763               7999999999999875 466655

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.42  E-value=0.011  Score=55.83  Aligned_cols=56  Identities=16%  Similarity=0.093  Sum_probs=43.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~   69 (240)
                      .|.+.+++.|++|+++++|+.+..+++++. |.....            +++..|.|+ .||+|+|.++.
T Consensus       213 ~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~------------g~~~~i~A~~aVIlAtGG~~~  270 (557)
T PRK12844        213 RMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRD------------GREVLIRARRGVLLASGGFGH  270 (557)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEEC------------CeEEEEEecceEEEecCCccC
Confidence            356788999999999999999998777664 544322            234578995 69999999886

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=96.41  E-value=0.014  Score=52.88  Aligned_cols=58  Identities=21%  Similarity=0.214  Sum_probs=49.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +.+..+.+|.+|+++|+|.+|+..++.+ .|.+++|.               +|.||+||+|-|-.+....+++
T Consensus       179 i~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~---------------~i~~~~vvlA~Grsg~dw~~~l  237 (486)
T COG2509         179 IREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGE---------------EIEADYVVLAPGRSGRDWFEML  237 (486)
T ss_pred             HHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCc---------------EEecCEEEEccCcchHHHHHHH
Confidence            4566788999999999999999988854 48888884               8999999999999888887766

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=96.39  E-value=0.013  Score=50.00  Aligned_cols=50  Identities=24%  Similarity=0.281  Sum_probs=42.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|+++++ ++|++++..++.+.|+++++.               ++++|.||+|+|.+.
T Consensus        63 l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~---------------~~~~d~liiAtG~~~  112 (300)
T TIGR01292        63 MKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGK---------------EYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCC---------------EEEeCEEEECCCCCc
Confidence            45567888999998 999999988788888887652               799999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12839 hypothetical protein; Provisional

Probab=96.36  E-value=0.011  Score=55.97  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=41.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~wa~~   70 (240)
                      .|++.|+++|++|+++++|+++... ++++. |...+.+           + +..+ .++.||+|+|.|+..
T Consensus       219 ~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~-----------g-~~~i~aak~VVLAtGGf~~n  278 (572)
T PRK12839        219 RLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPD-----------G-AVTVEATRGVVLATGGFPND  278 (572)
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCC-----------C-cEEEEeCCEEEEcCCCcccC
Confidence            4788899999999999999999765 45553 5432211           1 2234 458999999999973

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.36  E-value=0.011  Score=51.21  Aligned_cols=63  Identities=22%  Similarity=0.305  Sum_probs=47.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++|+.+++|++++...+++++...++.          .|++.+++||.||-|-|.+| .+.+.+
T Consensus       116 ~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~----------~g~~~~i~adlvVgADG~~S-~vR~~l  178 (356)
T PF01494_consen  116 ALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGE----------DGEEETIEADLVVGADGAHS-KVRKQL  178 (356)
T ss_dssp             HHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETC----------TCEEEEEEESEEEE-SGTT--HHHHHT
T ss_pred             hhhhhhhhhhhhheeeeeccccccccccccccccccc----------CCceeEEEEeeeecccCccc-chhhhc
Confidence            4678889999999999999999988888764443331          13345799999999999987 555656

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.32  E-value=0.008  Score=55.69  Aligned_cols=50  Identities=22%  Similarity=0.231  Sum_probs=44.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +|++.|+++|++|+++++|+.|..++++ +.+.+.+|.               .+++|.||.++..
T Consensus       229 aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~---------------~~~ad~vv~~~~~  279 (487)
T COG1233         229 ALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGE---------------NIEADAVVSNADP  279 (487)
T ss_pred             HHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccc---------------eeccceeEecCch
Confidence            7899999999999999999999998875 567777662               6999999999988

>PRK09897 hypothetical protein; Provisional

Probab=96.28  E-value=0.015  Score=54.50  Aligned_cols=52  Identities=10%  Similarity=0.034  Sum_probs=41.9

Q ss_pred             hhHHHHHCC--cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHG--TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~G--a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +++.+.+.|  ++++.+++|++++..++++.|+++++.              ..+.||.||+|+|...
T Consensus       113 l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg--------------~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        113 LVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDL--------------PSETFDLAVIATGHVW  166 (534)
T ss_pred             HHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCC--------------eEEEcCEEEECCCCCC
Confidence            556677787  788899999999998888998885531              1689999999999743

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.25  E-value=0.016  Score=45.17  Aligned_cols=43  Identities=16%  Similarity=0.221  Sum_probs=34.2

Q ss_pred             HCCcEEE-cCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            9 NHGTTFS-NNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         9 ~~Ga~i~-~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ..|.++. .+.+|++|+..++++.|.+++|.               .+.||.||+|+|.
T Consensus       112 ~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  112 PAGITVRHVRAEVVDIRRDDDGYRVVTADGQ---------------SIRADAVVLATGH  155 (156)
T ss_pred             cCCcEEEEEeeEEEEEEEcCCcEEEEECCCC---------------EEEeCEEEECCCC
Confidence            3454332 46799999999999988888873               7999999999994

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.25  E-value=0.017  Score=54.43  Aligned_cols=54  Identities=15%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+.+++.|++++++++|+++...++++. |..   .++             +...+.|+.||+|+|.++
T Consensus       134 ~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       134 TLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTG-------------EIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCC-------------cEEEEECCeEEECCCccc
Confidence            466778888999999999999988777664 433   233             234699999999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.23  E-value=0.015  Score=54.96  Aligned_cols=57  Identities=18%  Similarity=0.119  Sum_probs=41.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa~~   70 (240)
                      +|.+.++++|++|+++++|+++..+++++. |.....            +.++.|.| +.||+|+|.+..-
T Consensus       222 ~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~------------g~~~~i~a~kaVILAtGGf~~n  280 (564)
T PRK12845        222 GLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHR------------GREVTVTARRGVVLAAGGFDHD  280 (564)
T ss_pred             HHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEEC------------CcEEEEEcCCEEEEecCCcccc
Confidence            466778899999999999999987666654 543221            12345777 5799999998853

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.17  E-value=0.02  Score=54.88  Aligned_cols=57  Identities=7%  Similarity=-0.053  Sum_probs=41.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.+++.|++|++++.|+++..+++++. |...+..          .+....+.|+.||+|+|.++.
T Consensus       176 L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~----------~g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        176 LSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLV----------TGEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECC----------CCcEEEEECCEEEECCCCccc
Confidence            44467788999999999999988777664 5543210          122346999999999999774

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=96.17  E-value=0.018  Score=55.38  Aligned_cols=55  Identities=15%  Similarity=0.100  Sum_probs=42.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++|+++..+++++. |..   .+|             +...+.|+.||+|+|.++.
T Consensus       163 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G-------------~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        163 AVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITG-------------ELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCcccC
Confidence            466788899999999999999998777643 332   233             2346889999999998874

>PRK06996 hypothetical protein; Provisional

Probab=96.16  E-value=0.039  Score=49.53  Aligned_cols=62  Identities=8%  Similarity=0.067  Sum_probs=47.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++++.+++|++++..+++|+|+..++..            +.+++||.||.|-|.-...+.+.+
T Consensus       120 ~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g------------~~~i~a~lvIgADG~~~s~~r~~~  181 (398)
T PRK06996        120 ALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQG------------ARTLRARIAVQAEGGLFHDQKADA  181 (398)
T ss_pred             HHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCc------------ceEEeeeEEEECCCCCchHHHHHc
Confidence            47778888999999999999998888888887765411            127999999999996333344555

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.08  E-value=0.022  Score=53.76  Aligned_cols=57  Identities=12%  Similarity=0.013  Sum_probs=43.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+.+++.|++|++++.++++..+++++. |...+..          .++...+.|+.||+|+|.+.
T Consensus       141 ~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        141 TLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMK----------TLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECC----------CCeEEEEEeCeEEECCCccc
Confidence            466777888999999999999998777764 5443210          12345799999999999876

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.08  E-value=0.018  Score=54.66  Aligned_cols=55  Identities=7%  Similarity=0.045  Sum_probs=41.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~   69 (240)
                      |.+++++.|++|+++++|+.+..+ ++++. |.....            +.++.|.|+ .||+|+|.+..
T Consensus       219 l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~------------~~~~~i~a~~aVilAtGGf~~  276 (584)
T PRK12835        219 LRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVERE------------GRTLRIGARRGVILATGGFDH  276 (584)
T ss_pred             HHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeC------------CcEEEEEeceeEEEecCcccC
Confidence            456778889999999999999885 45564 544322            234579998 59999999884

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=96.05  E-value=0.024  Score=53.48  Aligned_cols=58  Identities=16%  Similarity=-0.017  Sum_probs=43.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++|+++..+++++. |...+.          ..++...|.|+.||+|+|.++.
T Consensus       124 ~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~----------~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       124 TLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCL----------ETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             HHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEc----------CCCcEEEEEeCeEEECCCCccc
Confidence            466778889999999999999988777654 433111          0123457999999999999874

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=96.05  E-value=0.024  Score=54.04  Aligned_cols=55  Identities=16%  Similarity=0.114  Sum_probs=41.0

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++| ++|+++++|+++..+++++. |.   +.++             ....+.|+.||+|+|.|+.
T Consensus       137 ~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        137 IVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVREN-------------KFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             HHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCC-------------cEEEEECCEEEECCCchhh
Confidence            3556777776 99999999999987777553 43   2222             2346999999999999875

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=96.04  E-value=0.027  Score=51.23  Aligned_cols=54  Identities=19%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+..+++|++++++++|++++..++++. +.+.++             ++..++||.||+|+|...
T Consensus       264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g-------------~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        264 ALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNH-------------GDIPLRARHFVLATGSFF  318 (422)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCC-------------ceEEEECCEEEEeCCCcc
Confidence            466778889999999999999998887765 444433             133699999999999753

>PRK08401 L-aspartate oxidase; Provisional

Probab=96.00  E-value=0.02  Score=52.72  Aligned_cols=52  Identities=13%  Similarity=0.055  Sum_probs=41.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +|.+.++++|++++++ .|+.+..+++++. |.++..                .+.|+.||+|+|.|+..
T Consensus       125 ~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~----------------~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        125 ILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGE----------------LLKFDATVIATGGFSGL  177 (466)
T ss_pred             HHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCE----------------EEEeCeEEECCCcCcCC
Confidence            4677888899999875 8989887677664 665332                69999999999999864

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=95.99  E-value=0.023  Score=50.77  Aligned_cols=57  Identities=9%  Similarity=0.078  Sum_probs=45.5

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+++.+. |++++.+++|++++.++++++|++++|.               +++||.||.|-|.+| .+.+.+
T Consensus       116 L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~---------------~~~~~lvIgADG~~S-~vR~~~  173 (384)
T PRK08849        116 LWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGA---------------EIEAKWVIGADGANS-QVRQLA  173 (384)
T ss_pred             HHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCC---------------EEEeeEEEEecCCCc-hhHHhc
Confidence            44444444 7999999999999988888888887773               799999999999987 445555

>TIGR00551 nadB L-aspartate oxidase

Probab=95.97  E-value=0.021  Score=52.90  Aligned_cols=57  Identities=14%  Similarity=0.062  Sum_probs=42.7

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +|.+.+++ .|++|+++++|+++..+++++. |.+.+..            ....+.|+.||+|+|.|+..
T Consensus       133 ~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~------------~~~~i~A~~VVlAtGG~~~~  191 (488)
T TIGR00551       133 TLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRE------------TVETCHADAVVLATGGAGKL  191 (488)
T ss_pred             HHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECC------------cEEEEEcCEEEECCCcccCC
Confidence            46677777 6999999999999987766654 5443321            12368999999999999863

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=95.95  E-value=0.024  Score=53.48  Aligned_cols=55  Identities=16%  Similarity=0.077  Sum_probs=41.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~   69 (240)
                      |.+.++++|++++++++|+++..+++++. |.....            +++..|.|+ .||+|+|.+..
T Consensus       214 L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~------------g~~~~i~A~~~VIlAtGG~~~  270 (557)
T PRK07843        214 LRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAES------------GEPQLIRARRGVILASGGFEH  270 (557)
T ss_pred             HHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeC------------CcEEEEEeceeEEEccCCcCc
Confidence            45667788999999999999988777664 544321            224579997 59999998875

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.93  E-value=0.029  Score=53.06  Aligned_cols=55  Identities=20%  Similarity=0.107  Sum_probs=42.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++|+++..+++++. |.   +.++             +...+.|+.||+|+|.++.
T Consensus       140 ~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        140 ELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADG-------------RLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             HHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCEEEECCCCCcC
Confidence            467778889999999999999987777653 32   2333             2336899999999999864

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=95.91  E-value=0.019  Score=49.26  Aligned_cols=64  Identities=20%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-ChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-wa~~l~~~~   75 (240)
                      +...|.++ |++|++++.|+.|...  +++++ |+..+....         .....+.++.||+|||+ .+.+|+...
T Consensus       198 ~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~---------~~~~~~~ak~VIlaAGai~Tp~LLl~S  266 (296)
T PF00732_consen  198 YLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG---------VQRRIVAAKEVILAAGAIGTPRLLLRS  266 (296)
T ss_dssp             HHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS---------EEEEEEEEEEEEE-SHHHHHHHHHHHT
T ss_pred             ccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc---------ceeeeccceeEEeccCCCCChhhhccc
Confidence            45566667 9999999999999665  45543 554333110         12346889999999997 566777666

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK07512 L-aspartate oxidase; Provisional

Probab=95.89  E-value=0.017  Score=53.81  Aligned_cols=55  Identities=11%  Similarity=0.059  Sum_probs=40.6

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+.++++ |++|+++++|+++..+++++. |.+.+.            +.+..+.|+.||+|+|.++
T Consensus       141 ~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~------------~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        141 ALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATA------------GGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeC------------CeEEEEECCEEEEcCCCCc
Confidence            466677765 899999999999987777654 544322            1133689999999999975

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.88  E-value=0.027  Score=51.36  Aligned_cols=55  Identities=9%  Similarity=0.123  Sum_probs=39.5

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++ .|++|+++++|++|..+++++. |. +.++             ....+.|+.||+|+|.++.
T Consensus       133 ~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g-------------~~~~i~Ak~VILAtGG~~~  190 (433)
T PRK06175        133 ILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDN-------------KQINIYSKVTILATGGIGG  190 (433)
T ss_pred             HHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECC-------------cEEEEEcCeEEEccCcccc
Confidence            35556665 5999999999999987666543 33 2233             1236899999999998663

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=95.86  E-value=0.029  Score=51.18  Aligned_cols=52  Identities=13%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++++++++|++++..++.+.|+++++                ++.+|.||+|+|.+.+.
T Consensus       205 l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g----------------~i~~D~vl~a~G~~pn~  256 (441)
T PRK08010        205 IATILRDQGVDIILNAHVERISHHENQVQVHSEHA----------------QLAVDALLIASGRQPAT  256 (441)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC----------------eEEeCEEEEeecCCcCC
Confidence            45667889999999999999987777777777666                69999999999998764

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=95.82  E-value=0.03  Score=52.20  Aligned_cols=54  Identities=11%  Similarity=0.044  Sum_probs=38.9

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCCh
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa   68 (240)
                      |.+.+.+ .|++|+++++|+++..+++++. |.....            +.+..|.|+ .||+|||.+.
T Consensus       179 l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~------------g~~~~i~A~k~VIlAtGG~~  235 (513)
T PRK12837        179 FLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERG------------GERRRVRARRGVLLAAGGFE  235 (513)
T ss_pred             HHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEEC------------CcEEEEEeCceEEEeCCCcc
Confidence            3444445 4999999999999988777664 543222            234579996 7999999985

>PRK14727 putative mercuric reductase; Provisional

Probab=95.80  E-value=0.034  Score=51.35  Aligned_cols=52  Identities=19%  Similarity=0.133  Sum_probs=44.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++++++++|+.++..++.+.|.++++                ++.||.||+|+|.+.+.
T Consensus       234 l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g----------------~i~aD~VlvA~G~~pn~  285 (479)
T PRK14727        234 LTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG----------------ELRAEKLLISTGRHANT  285 (479)
T ss_pred             HHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC----------------eEEeCEEEEccCCCCCc
Confidence            45567789999999999999987777777877666                79999999999998764

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=95.75  E-value=0.028  Score=51.48  Aligned_cols=54  Identities=19%  Similarity=0.031  Sum_probs=44.3

Q ss_pred             ChhhHHHHHCCcEEEcCceEEEEEEeCC-e-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            1 MWVQGEAENHGTTFSNNTSVIGGHLEGN-C-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~~-~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      ++|++.++.+|++++++++|+.|...++ + +.|++++|+               ++.|+.||.....|..
T Consensus       236 qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge---------------~i~a~~VV~~~s~~p~  291 (443)
T PTZ00363        236 QAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE---------------VAKCKLVICDPSYFPD  291 (443)
T ss_pred             HHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc---------------EEECCEEEECcccccc
Confidence            4688889999999999999999987753 3 458887773               7999999997777654

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=95.75  E-value=0.032  Score=53.28  Aligned_cols=55  Identities=11%  Similarity=0.019  Sum_probs=42.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEE-eCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHL-EGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++|+++++|+++.. +++++. |..   .+|             +...+.|+.||+|+|.++.
T Consensus       171 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~  230 (617)
T PTZ00139        171 TLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDG-------------SIHRFRAHYTVIATGGYGR  230 (617)
T ss_pred             HHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCC-------------eEEEEECCcEEEeCCCCcc
Confidence            467778889999999999999887 556554 443   233             3457999999999999863

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.71  E-value=0.037  Score=49.26  Aligned_cols=57  Identities=9%  Similarity=0.130  Sum_probs=46.5

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+++++.+ ++++++++|++++..++++.|+++++                +++||.||-|=|.+| .+.+.+
T Consensus       109 ~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~----------------~~~adlvIgADG~~S-~vR~~l  166 (374)
T PRK06617        109 ILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK----------------QIKCNLLIICDGANS-KVRSHY  166 (374)
T ss_pred             HHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC----------------EEeeCEEEEeCCCCc-hhHHhc
Confidence            4566677765 89999999999998888888888665                799999999999977 455555

>PRK05868 hypothetical protein; Validated

Probab=95.69  E-value=0.035  Score=49.50  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +...|++++++++|++++..+++++|+.++|.               +++||.||-|-|.+| .+.+.+
T Consensus       114 ~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~---------------~~~adlvIgADG~~S-~vR~~~  166 (372)
T PRK05868        114 ATQPSVEYLFDDSISTLQDDGDSVRVTFERAA---------------AREFDLVIGADGLHS-NVRRLV  166 (372)
T ss_pred             hccCCcEEEeCCEEEEEEecCCeEEEEECCCC---------------eEEeCEEEECCCCCc-hHHHHh
Confidence            34569999999999999887788888888773               799999999999988 455544

>PRK08071 L-aspartate oxidase; Provisional

Probab=95.64  E-value=0.027  Score=52.47  Aligned_cols=55  Identities=18%  Similarity=0.043  Sum_probs=40.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.++ .|++|+++++|+++...++++. |.+.+.           .++...+.|+.||+|+|.++.
T Consensus       136 L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~-----------~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        136 LLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDS-----------EGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             HHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEEC-----------CCcEEEEEcCeEEEecCCCcc
Confidence            444454 6999999999999987777654 554332           123446899999999999875

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=95.63  E-value=0.04  Score=49.53  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=45.7

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+.+. |++++++++|++++..++.+.|++++|+               +++||.||-|-|.++ .+.+.+
T Consensus       117 L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~a~lvIgADG~~S-~vR~~~  174 (405)
T PRK08850        117 LLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQ---------------ALTAKLVVGADGANS-WLRRQM  174 (405)
T ss_pred             HHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCC---------------EEEeCEEEEeCCCCC-hhHHHc
Confidence            44555554 7999999999999888888888887763               799999999999876 455555

>TIGR00292 thiazole biosynthesis enzyme

Probab=95.62  E-value=0.051  Score=46.00  Aligned_cols=63  Identities=24%  Similarity=0.112  Sum_probs=43.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC--eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN--CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~--~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|.+.|.++|++++++++|+++...++  ++. |.+.......+   .. ..+..+++|+.||.|+|..+
T Consensus       105 ~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~---g~-~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       105 TLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELA---GL-HVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             HHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCcccccc---CC-CCCCEEEEcCEEEEeecCCc
Confidence            467788999999999999999988776  343 55532200000   00 01356899999999999865

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK08275 putative oxidoreductase; Provisional

Probab=95.59  E-value=0.048  Score=51.34  Aligned_cols=55  Identities=9%  Similarity=0.011  Sum_probs=41.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.+++.|++|+++++|+++..+ ++++. |..   .+|             +...+.|+.||+|+|.++.
T Consensus       142 ~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        142 VLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTG-------------EFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCC-------------cEEEEECCEEEECCCCccc
Confidence            4667788899999999999999876 55553 432   233             2346899999999999763

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.57  E-value=0.052  Score=48.80  Aligned_cols=57  Identities=19%  Similarity=0.245  Sum_probs=44.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|++++++++|++++. ++.+.|++.+|.               ++.||.||+|+|...+. |++.+
T Consensus       192 l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~---------------~i~aD~Vv~a~G~~pn~~l~~~~  249 (396)
T PRK09754        192 LLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGE---------------TLQADVVIYGIGISANDQLAREA  249 (396)
T ss_pred             HHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCC---------------EEECCEEEECCCCChhhHHHHhc
Confidence            44556788999999999999976 556677777663               79999999999998754 44444

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.53  E-value=0.046  Score=51.70  Aligned_cols=58  Identities=16%  Similarity=0.034  Sum_probs=42.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++++++..+ ++++. |...+.          ..+....|.|+.||+|+|.++.
T Consensus       131 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~----------~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        131 TLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICI----------ETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEc----------CCCcEEEEecCeEEECCCCccc
Confidence            4667788889999999999999875 55553 443111          0123457999999999999884

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.53  E-value=0.046  Score=52.03  Aligned_cols=55  Identities=11%  Similarity=0.073  Sum_probs=42.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|++++.|+++..++ +++. |..   .+|             ....|.|+.||+|+|.+..
T Consensus       154 ~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        154 TLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDG-------------TLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             HHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCC-------------cEEEEEcCEEEECCCCCcc
Confidence            46677888999999999999998765 5554 443   233             3457999999999999875

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.52  E-value=0.044  Score=51.95  Aligned_cols=55  Identities=22%  Similarity=0.146  Sum_probs=41.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC----CeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG----NCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~----~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|++++.|+++..++    +++. |..   .++             +...+.|+.||+|+|.++.
T Consensus       145 ~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        145 TLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATG-------------EIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCC-------------eEEEEEeCeEEECCCCCcc
Confidence            46777888999999999999998765    5553 433   223             2346899999999999873

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=95.51  E-value=0.063  Score=48.84  Aligned_cols=57  Identities=14%  Similarity=0.144  Sum_probs=43.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+.++++|++++++++|+++...++...+.++++                ++.||.||+|+|...+ .+++.+
T Consensus       197 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~d~vi~a~G~~p~~~~l~~~  254 (444)
T PRK09564        197 MEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG----------------EYEADVVIVATGVKPNTEFLEDT  254 (444)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC----------------EEEcCEEEECcCCCcCHHHHHhc
Confidence            45567889999999999999965444344666655                7999999999998764 455544

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=95.46  E-value=0.04  Score=50.63  Aligned_cols=51  Identities=18%  Similarity=0.414  Sum_probs=37.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|.+.|+++||+++.++ |+.+...++ .+ .|++++|.               +++||.||-|+|.-+
T Consensus       159 ~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~---------------~i~ad~~IDASG~~s  211 (454)
T PF04820_consen  159 FLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGR---------------TIEADFFIDASGRRS  211 (454)
T ss_dssp             HHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSE---------------EEEESEEEE-SGGG-
T ss_pred             HHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCC---------------EEEEeEEEECCCccc
Confidence            47889999999999875 777776654 44 48888873               799999999999755

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.45  E-value=0.055  Score=49.55  Aligned_cols=53  Identities=13%  Similarity=0.142  Sum_probs=43.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++++++++|++++..++++.+++++|.               ++++|.||+|+|...+.
T Consensus       222 l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~vi~a~G~~p~~  274 (461)
T PRK05249        222 LSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGK---------------KIKADCLLYANGRTGNT  274 (461)
T ss_pred             HHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCC---------------EEEeCEEEEeecCCccc
Confidence            556778899999999999999877777777766552               69999999999987653

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.44  E-value=0.057  Score=50.39  Aligned_cols=51  Identities=12%  Similarity=0.091  Sum_probs=43.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.++++|++++++++|+++...++.+.|+++++.               .+.|+.||+|+|...
T Consensus       272 l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~---------------~i~a~~vViAtG~~~  322 (517)
T PRK15317        272 LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGA---------------VLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEcCEEEECCCCCc
Confidence            556778899999999999999887778888886662               699999999999844

>PLN02268 probable polyamine oxidase

Probab=95.27  E-value=0.043  Score=49.80  Aligned_cols=46  Identities=15%  Similarity=0.127  Sum_probs=38.5

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.|.+|+++++|++|...+++|+|++.+|.               ++.||+||+|.-+..
T Consensus       207 l~~~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~VIva~P~~~  252 (435)
T PLN02268        207 LAKGLDIRLNHRVTKIVRRYNGVKVTVEDGT---------------TFVADAAIIAVPLGV  252 (435)
T ss_pred             HhccCceeCCCeeEEEEEcCCcEEEEECCCc---------------EEEcCEEEEecCHHH
Confidence            3457899999999999998888999887773               699999999986544

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.22  E-value=0.056  Score=50.78  Aligned_cols=53  Identities=8%  Similarity=0.023  Sum_probs=40.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |.+.+++.|++|+++++|+++..++++ +. |..   .++             ..+.+.|+.||+|+|.++
T Consensus       140 L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        140 LMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNG-------------EIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCC-------------cEEEEEcCcEEECCCCCC
Confidence            566677789999999999999876654 53 433   233             244799999999999976

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=95.20  E-value=0.068  Score=51.23  Aligned_cols=58  Identities=12%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|++++.++++..+ ++++. |...+..          .|+...|.|+.||+|+|.+..
T Consensus       192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~g~  251 (635)
T PLN00128        192 TLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNME----------DGTLHRFRAHSTILATGGYGR  251 (635)
T ss_pred             HHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcC----------CCeEEEEEcCeEEECCCCCcc
Confidence            4667788899999999999998776 45553 4432110          123457999999999999874

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=95.19  E-value=0.061  Score=49.69  Aligned_cols=55  Identities=13%  Similarity=0.112  Sum_probs=40.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC--Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG--NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~--~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+++..+++|++|+.+++|++|+.++  ++   + .|++.+|.++            .++.||.||.|+.+|.
T Consensus       224 pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~------------~~~~aD~VVlA~p~~~  284 (474)
T TIGR02732       224 PILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGK------------KVIKADAYVAACDVPG  284 (474)
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcc------------eEEECCEEEECCChHH
Confidence            36677788999999999999998864  22   3 2445433111            1589999999999875

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.18  E-value=0.077  Score=49.50  Aligned_cols=51  Identities=14%  Similarity=0.110  Sum_probs=42.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.++++|++++++++|+++...++.+.|++++|.               .+.+|.||+|+|...
T Consensus       273 l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~---------------~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       273 LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGE---------------VLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCc
Confidence            456677889999999999999887777888887662               699999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14694 putative mercuric reductase; Provisional

Probab=95.14  E-value=0.075  Score=48.91  Aligned_cols=52  Identities=12%  Similarity=0.151  Sum_probs=42.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|+++++++.|+.++..++.+.+.++++                ++++|.||+|+|...+.
T Consensus       224 l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~  275 (468)
T PRK14694        224 IEAAFRREGIEVLKQTQASEVDYNGREFILETNAG----------------TLRAEQLLVATGRTPNT  275 (468)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC----------------EEEeCEEEEccCCCCCc
Confidence            45566788999999999999987766666777655                79999999999987765

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.11  E-value=0.076  Score=50.45  Aligned_cols=58  Identities=7%  Similarity=-0.089  Sum_probs=41.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.+++.|++|++++.|+++... ++++. |...+..          .+....+.|+.||+|+|.++.
T Consensus       148 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        148 TLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIE----------TGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             HHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcC----------CCcEEEEEcCeEEECCCCccc
Confidence            4666778889999999999999875 55553 4431110          123456899999999999875

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=95.10  E-value=0.024  Score=51.39  Aligned_cols=54  Identities=17%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      ++++.|+++|++|++.+.|.+|..++++.. |...+|.               +++++.||--|+.|-..
T Consensus       269 aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~---------------ev~sk~VvSNAt~~~Tf  323 (561)
T KOG4254|consen  269 AIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGT---------------EVRSKIVVSNATPWDTF  323 (561)
T ss_pred             HHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCc---------------EEEeeeeecCCchHHHH
Confidence            688999999999999999999999887764 9999984               79999999999999754

>PRK06116 glutathione reductase; Validated

Probab=95.08  E-value=0.075  Score=48.56  Aligned_cols=51  Identities=14%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++++++++|++++..+++ +.|++.+|.               +++||.||+|+|.-.
T Consensus       214 l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~---------------~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        214 LVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGE---------------TLTVDCLIWAIGREP  265 (450)
T ss_pred             HHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCc---------------EEEeCEEEEeeCCCc
Confidence            456678899999999999999876554 677776662               699999999999754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=95.06  E-value=0.073  Score=47.67  Aligned_cols=60  Identities=12%  Similarity=0.063  Sum_probs=44.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEE-eCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHL-EGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+.+.|++++++++|++++. .++.+.|+. .+|             ++.+++||.||-|-|.+| .+.+.+
T Consensus       108 ~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G-------------~~~~i~ad~vVgADG~~S-~vR~~~  169 (392)
T PRK08243        108 DLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDG-------------EEHRLDCDFIAGCDGFHG-VSRASI  169 (392)
T ss_pred             HHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCC-------------eEEEEEeCEEEECCCCCC-chhhhc
Confidence            356677888999999999999986 445555655 234             234799999999999987 566665

>PRK07804 L-aspartate oxidase; Provisional

Probab=95.05  E-value=0.07  Score=50.16  Aligned_cols=58  Identities=9%  Similarity=0.023  Sum_probs=41.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++++++++|+++...+ +++. |...+   +.          .+....+.|+.||+|+|.++.
T Consensus       149 ~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~----------~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        149 ALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGS----------PDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             HHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCC----------CCcEEEEEcCeEEECCCCCCC
Confidence            46677888999999999999998765 4443 43320   10          011236999999999999874

>TIGR02731 phytoene_desat phytoene desaturase

Probab=95.04  E-value=0.051  Score=49.65  Aligned_cols=62  Identities=8%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC-eE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|++.++++|++|+++++|++|+..++ .+ .|++.+++          ++..+++.||.||.|+.+.+  +.+++
T Consensus       218 ~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~----------~~~~~~~~a~~VI~a~p~~~--~~~lL  281 (453)
T TIGR02731       218 PIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGE----------GQRRFEVTADAYVSAMPVDI--FKLLL  281 (453)
T ss_pred             HHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCC----------CCceeEEECCEEEEcCCHHH--HHhhC
Confidence            466777788999999999999986544 34 36664441          01123589999999997643  44444

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.92  E-value=0.061  Score=46.84  Aligned_cols=52  Identities=27%  Similarity=0.323  Sum_probs=42.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL   71 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l   71 (240)
                      +.+.|++.|+++.. .+|..++..++.++|+|+++                +++||.||+|+|.....+
T Consensus        67 ~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~----------------~~~ak~vIiAtG~~~~~~  118 (305)
T COG0492          67 MKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG----------------TYEAKAVIIATGAGARKL  118 (305)
T ss_pred             HHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC----------------eEEEeEEEECcCCcccCC
Confidence            45667778999997 88888887766778999998                799999999999866443

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=94.87  E-value=0.54  Score=42.82  Aligned_cols=58  Identities=16%  Similarity=0.264  Sum_probs=44.9

Q ss_pred             hhhHHHHHCC---cEEEcCceEEEEEEe-------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314            2 WVQGEAENHG---TTFSNNTSVIGGHLE-------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL   71 (240)
Q Consensus         2 al~~~A~~~G---a~i~~~~~V~~i~~~-------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l   71 (240)
                      .|.+.+++.+   ++++++++|++++..       +++++|++.+|+               +++||.||-|=|.+| .+
T Consensus       122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~---------------~i~a~llVgADG~~S-~v  185 (437)
T TIGR01989       122 SLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQ---------------VLYTKLLIGADGSNS-NV  185 (437)
T ss_pred             HHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCC---------------EEEeeEEEEecCCCC-hh
Confidence            3566677765   899999999999753       356778887763               799999999999977 45


Q ss_pred             HHHh
Q 026314           72 AKRF   75 (240)
Q Consensus        72 ~~~~   75 (240)
                      .+.+
T Consensus       186 R~~~  189 (437)
T TIGR01989       186 RKAA  189 (437)
T ss_pred             HHHc
Confidence            5555

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=94.83  E-value=0.096  Score=47.23  Aligned_cols=49  Identities=10%  Similarity=0.110  Sum_probs=40.0

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ...++.+++|++|+..+++|+|++++|.               +++||.||.|.|.||. +.+.+
T Consensus       117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~ad~vVgADG~~S~-vR~~l  165 (414)
T TIGR03219       117 EGIASFGKRATQIEEQAEEVQVLFTDGT---------------EYRCDLLIGADGIKSA-LRDYV  165 (414)
T ss_pred             CceEEcCCEEEEEEecCCcEEEEEcCCC---------------EEEeeEEEECCCccHH-HHHHh
Confidence            4568889999999988888998887773               6999999999999984 44433

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02676 polyamine oxidase

Probab=94.76  E-value=0.059  Score=49.96  Aligned_cols=42  Identities=19%  Similarity=0.138  Sum_probs=37.2

Q ss_pred             cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           12 TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        12 a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+|+++++|++|...+++++|+|.+|.               +++||+||+|..+..
T Consensus       245 ~~I~l~~~V~~I~~~~~gV~V~~~~G~---------------~~~a~~VIvtvPl~v  286 (487)
T PLN02676        245 PRLKLNKVVREISYSKNGVTVKTEDGS---------------VYRAKYVIVSVSLGV  286 (487)
T ss_pred             CceecCCEeeEEEEcCCcEEEEECCCC---------------EEEeCEEEEccChHH
Confidence            689999999999998889999998873               799999999998644

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=94.69  E-value=0.12  Score=49.38  Aligned_cols=55  Identities=15%  Similarity=0.019  Sum_probs=38.6

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeC---CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEG---NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~---~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      ..+++.+++|+++++|+++...+   +++. |...+.          ..++.+.+.|+.||+|+|.|+.
T Consensus       134 ~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~----------~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       134 EAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNV----------RANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             HHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEe----------CCCcEEEEECCEEEECCCcccc
Confidence            34556678999999999998764   4543 443111          0133557999999999999975

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.66  E-value=0.11  Score=47.66  Aligned_cols=55  Identities=13%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++|+..++++.+++.++            +++.++++|.||+|+|...+
T Consensus       219 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g------------g~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        219 AERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG------------GKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC------------CeeEEEEeCEEEEeeCCccC
Confidence            45567788999999999999988777777766543            11237999999999998654

>PRK06753 hypothetical protein; Provisional

Probab=94.64  E-value=0.086  Score=46.66  Aligned_cols=49  Identities=8%  Similarity=0.142  Sum_probs=40.8

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ..+|+++++|++++..++++.|++++|.               ++++|.||-|-|.+| .+.+.+
T Consensus       110 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~~~vigadG~~S-~vR~~~  158 (373)
T PRK06753        110 EDAIFTGKEVTKIENETDKVTIHFADGE---------------SEAFDLCIGADGIHS-KVRQSV  158 (373)
T ss_pred             CceEEECCEEEEEEecCCcEEEEECCCC---------------EEecCEEEECCCcch-HHHHHh
Confidence            4689999999999988888988887773               689999999999877 455555

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.64  E-value=0.12  Score=47.37  Aligned_cols=52  Identities=17%  Similarity=0.269  Sum_probs=41.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++++..++++.|++.++.               ++++|.||+|+|.-.+
T Consensus       213 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~D~viva~G~~pn  264 (446)
T TIGR01424       213 LARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGE---------------EIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCc---------------EeecCEEEEeeCCCcC
Confidence            445667889999999999999876666777776552               6999999999997543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.63  E-value=0.096  Score=35.76  Aligned_cols=35  Identities=17%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES   37 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g   37 (240)
                      +.+..+++|+++++++.|++|+..+++++|++++|
T Consensus        46 ~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   46 LEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            45677889999999999999999987777888775

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK07538 hypothetical protein; Provisional

Probab=94.62  E-value=0.1  Score=47.10  Aligned_cols=62  Identities=8%  Similarity=0.249  Sum_probs=43.8

Q ss_pred             hhHHHHH-CCc-EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAEN-HGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~-~Ga-~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+.+ .|. .|+.+++|++++..++++.+...++.          .+++.+++||.||-|-|.+|. +.+.+
T Consensus       108 L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~----------~g~~~~~~adlvIgADG~~S~-vR~~l  171 (413)
T PRK07538        108 LLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRA----------GGDLVSVRGDVLIGADGIHSA-VRAQL  171 (413)
T ss_pred             HHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccC----------CCccceEEeeEEEECCCCCHH-Hhhhh
Confidence            5556655 575 69999999999887776655554431          123457999999999999774 44544

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=94.61  E-value=0.13  Score=49.39  Aligned_cols=53  Identities=17%  Similarity=0.271  Sum_probs=42.9

Q ss_pred             HHCCcE-EEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            8 ENHGTT-FSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         8 ~~~Ga~-i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ++.|.+ ++++++|++|+..+++++|++++|.               +++||.||.|.|.|+..-..++
T Consensus       202 ~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~---------------ti~aDlVVGADG~~S~vR~~l~  255 (668)
T PLN02927        202 RAVGEDVIRNESNVVDFEDSGDKVTVVLENGQ---------------RYEGDLLVGADGIWSKVRNNLF  255 (668)
T ss_pred             hhCCCCEEEcCCEEEEEEEeCCEEEEEECCCC---------------EEEcCEEEECCCCCcHHHHHhc
Confidence            344554 6788999999988889998887773               6899999999999997665555

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.61  E-value=0.12  Score=47.20  Aligned_cols=54  Identities=17%  Similarity=0.110  Sum_probs=42.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++|+..++++.+++.+|+             +.++++|.||+|+|...+
T Consensus       217 ~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~-------------~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       217 VAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGE-------------TETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCc-------------EEEEEeCEEEEecCCccc
Confidence            445677889999999999999887777777765541             126999999999998654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.60  E-value=0.13  Score=49.00  Aligned_cols=58  Identities=12%  Similarity=-0.057  Sum_probs=41.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+.+.|+++++++.|+++... ++++. |...+..          .+....+.|+.||+|+|.++.
T Consensus       153 ~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        153 TLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEME----------TGDVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcC----------CCeEEEEECCeEEECCCCccc
Confidence            3667788899999999999999875 45543 5432110          122346899999999999764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.59  E-value=0.13  Score=49.30  Aligned_cols=44  Identities=9%  Similarity=0.024  Sum_probs=33.7

Q ss_pred             cEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           12 TTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        12 a~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ++|++++.|+++..+++++. |..   .++             ....+.|+.||+|+|.+.
T Consensus       166 v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        166 IKVFAECTITELLKDGGRIAGAFGYWRESG-------------RFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             eEEEeCCEEEEEEEECCEEEEEEEEECCCC-------------eEEEEEcCeEEECCCccc
Confidence            99999999999988777553 332   222             244699999999999865

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=94.56  E-value=0.1  Score=49.55  Aligned_cols=51  Identities=18%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.+.+. |++++ +++|+++..+++++. |.+.+|.               .+.|+.||+|+|.|++
T Consensus       106 L~e~L~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~---------------~I~Ak~VIlATGTFL~  158 (618)
T PRK05192        106 MREILENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGL---------------EFRAKAVVLTTGTFLR  158 (618)
T ss_pred             HHHHHHcCCCcEEE-EeEEEEEEecCCEEEEEEECCCC---------------EEECCEEEEeeCcchh
Confidence            44455555 78886 578999988888775 8887773               7999999999998763

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.47  E-value=0.12  Score=48.50  Aligned_cols=54  Identities=22%  Similarity=0.134  Sum_probs=39.8

Q ss_pred             hhHHHHHCCc--EEEcCceEEEEEEeC-----CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGT--TFSNNTSVIGGHLEG-----NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga--~i~~~~~V~~i~~~~-----~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |...|+..|-  .|+++|+|+++++.+     ++|+|+++++            +++.+-..|.||+|+|.++
T Consensus        90 l~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~------------g~~~~~~fD~VvvatG~~~  150 (531)
T PF00743_consen   90 LESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND------------GKEETEEFDAVVVATGHFS  150 (531)
T ss_dssp             HHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT------------TEEEEEEECEEEEEE-SSS
T ss_pred             HHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC------------CeEEEEEeCeEEEcCCCcC
Confidence            4456666665  799999999999865     4799988654            2233566899999999876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.45  E-value=0.041  Score=45.61  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=43.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL   71 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l   71 (240)
                      +.+.+.+.|.+|++ ..|.++..++..++|.|+.+                .+.||.||+|+|+-+.+|
T Consensus        76 mrkqs~r~Gt~i~t-EtVskv~~sskpF~l~td~~----------------~v~~~avI~atGAsAkRl  127 (322)
T KOG0404|consen   76 MRKQSERFGTEIIT-ETVSKVDLSSKPFKLWTDAR----------------PVTADAVILATGASAKRL  127 (322)
T ss_pred             HHHHHHhhcceeee-eehhhccccCCCeEEEecCC----------------ceeeeeEEEecccceeee
Confidence            45678889999997 56888988888899999877                899999999999977554

>TIGR00136 gidA glucose-inhibited division protein A

Probab=94.45  E-value=0.14  Score=48.61  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=37.6

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEe-CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLE-GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~-~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++.+.+++. |++++. .+|+++... ++++ .|.+.+|.               .+.|+.||+|+|.|
T Consensus       101 ~L~e~Le~~pgV~Ile-~~Vv~li~e~~g~V~GV~t~~G~---------------~I~Ad~VILATGtf  153 (617)
T TIGR00136       101 AMRNALENQPNLSLFQ-GEVEDLILEDNDEIKGVVTQDGL---------------KFRAKAVIITTGTF  153 (617)
T ss_pred             HHHHHHHcCCCcEEEE-eEEEEEEEecCCcEEEEEECCCC---------------EEECCEEEEccCcc
Confidence            355566666 778875 578888665 5555 48887773               79999999999999

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK13748 putative mercuric reductase; Provisional

Probab=94.44  E-value=0.14  Score=48.18  Aligned_cols=52  Identities=10%  Similarity=0.043  Sum_probs=42.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++|+++++|+.++..++.+.+.++++                ++++|.||+|+|...+.
T Consensus       316 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~----------------~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        316 VTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG----------------ELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC----------------eEEeCEEEEccCCCcCC
Confidence            44566788999999999999987777777777666                79999999999986654

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=94.37  E-value=0.16  Score=48.43  Aligned_cols=49  Identities=8%  Similarity=-0.130  Sum_probs=34.7

Q ss_pred             CCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           10 HGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|++|+++++|+++...+ +++. |...+..          .+....+.|+.||+|+|.++
T Consensus       146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~~----------~g~~~~i~AkaVVLATGG~g  196 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGNRARGIIARNLV----------TGEIETHSADAVILATGGYG  196 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCCEEEEEEEEECC----------CCcEEEEEcCEEEECCCCCc
Confidence            389999999999998754 4553 5543210          12234689999999999974

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=94.37  E-value=0.15  Score=46.22  Aligned_cols=43  Identities=14%  Similarity=0.136  Sum_probs=36.0

Q ss_pred             HCCc-EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            9 NHGT-TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         9 ~~Ga-~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ..+. +|+++++|++|+..+++|.|++++|+               ++.||.||+|+-+
T Consensus       230 ~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~~d~vI~a~p~  273 (451)
T PRK11883        230 KLPAGTIHKGTPVTKIDKSGDGYEIVLSNGG---------------EIEADAVIVAVPH  273 (451)
T ss_pred             hCcCCeEEeCCEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECCCH
Confidence            3344 89999999999998888888887763               6999999999875

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.34  E-value=0.13  Score=48.45  Aligned_cols=50  Identities=16%  Similarity=0.309  Sum_probs=40.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.++++|++++ +++|+.+...++.+.|++.++                .+.++.||+|+|.+..
T Consensus        66 l~~~~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g----------------~~~a~~lVlATGa~p~  115 (555)
T TIGR03143        66 MRQQAQDFGVKFL-QAEVLDVDFDGDIKTIKTARG----------------DYKTLAVLIATGASPR  115 (555)
T ss_pred             HHHHHHHcCCEEe-ccEEEEEEecCCEEEEEecCC----------------EEEEeEEEECCCCccC
Confidence            4456778899986 789999987766677888766                7999999999999754

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK07208 hypothetical protein; Provisional

Probab=94.34  E-value=0.13  Score=47.39  Aligned_cols=56  Identities=23%  Similarity=0.248  Sum_probs=39.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE--EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN--VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~--V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|++.+++.|++|+++++|+.|..+++++.  +...+.           .|.+.++.||.||.|.-++.
T Consensus       223 ~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~-----------~g~~~~~~ad~VI~a~p~~~  280 (479)
T PRK07208        223 TAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDT-----------DGTEETVTADQVISSMPLRE  280 (479)
T ss_pred             HHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcC-----------CCCEEEEEcCEEEECCCHHH
Confidence            466777788999999999999998877643  332221           01223689999999888653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.24  E-value=0.16  Score=46.29  Aligned_cols=50  Identities=18%  Similarity=0.171  Sum_probs=39.7

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+..+++|++++++++|++|+..++.+.+++++.                ++++|.||+|+|.-.+
T Consensus       205 ~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~----------------~i~~D~viva~G~~p~  254 (438)
T PRK07251        205 KQYMEEDGITFLLNAHTTEVKNDGDQVLVVTEDE----------------TYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHcCCEEEcCCEEEEEEecCCEEEEEECCe----------------EEEcCEEEEeeCCCCC
Confidence            3456788999999999999987666666665433                7999999999998654

>PLN02507 glutathione reductase

Probab=94.24  E-value=0.17  Score=47.06  Aligned_cols=52  Identities=13%  Similarity=0.211  Sum_probs=42.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|+++++++.|++++..++++.|.+.+|.               ++++|.|++|.|.-.+
T Consensus       250 l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        250 VARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGE---------------EFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCc---------------EEEcCEEEEeecCCCC
Confidence            344567889999999999999877777777776652               6999999999997554

>PRK06475 salicylate hydroxylase; Provisional

Probab=94.20  E-value=0.16  Score=45.56  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+++.+ .|++++++++|++++..+++++|+..++..            +.+++||.||-|=|.+| .+.+.+
T Consensus       112 ~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~------------~~~~~adlvIgADG~~S-~vR~~~  173 (400)
T PRK06475        112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNS------------VETVSAAYLIACDGVWS-MLRAKA  173 (400)
T ss_pred             HHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCC------------CcEEecCEEEECCCccH-hHHhhc
Confidence            35556655 489999999999998887888776532211            12689999999999987 344444

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=94.01  E-value=0.2  Score=47.22  Aligned_cols=58  Identities=14%  Similarity=0.028  Sum_probs=37.1

Q ss_pred             CCcEEEcCceEEEEEEeCCeEE-EEec---CCcccccCCC--CCCCCCceeEecCEEEEcCCCChH
Q 026314           10 HGTTFSNNTSVIGGHLEGNCMN-VYIS---ESKNLRNWDG--VSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~~~~-V~t~---~g~~~~~~~~--~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|++|+++++++++..+++++. |...   ++.  +.-..  ..+.+.+..|.|+.||+|+|.++.
T Consensus       165 ~gv~i~~~t~~~~Li~~~g~V~Gv~~~~~~~~~--~~~~~~~~~~~~~~~~i~AkaVILATGGf~~  228 (549)
T PRK12834        165 GLVRFRFRHRVDELVVTDGAVTGVRGTVLEPSD--AERGEASSREVVGEFELRAQAVIVTSGGIGG  228 (549)
T ss_pred             CCceEEecCEeeEEEEeCCEEEEEEEEeccccc--ccccccccccccceEEEecCEEEEeCCCccc
Confidence            3699999999999988777664 5531   110  00000  001123457999999999999884

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=93.93  E-value=0.2  Score=47.51  Aligned_cols=53  Identities=13%  Similarity=0.071  Sum_probs=39.3

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |.+.+++ .|++++++++|+++...++++. |..   .++             +...+.|+.||+|+|.++
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRG-------------EFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCC-------------eEEEEECCcEEEcCchhc
Confidence            5566665 5999999999999987777653 332   233             234689999999999984

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=93.92  E-value=0.14  Score=48.23  Aligned_cols=59  Identities=19%  Similarity=0.192  Sum_probs=41.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe--C--CeEE-EEecC-CcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE--G--NCMN-VYISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~--~--~~~~-V~t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      -|.+.++++|++|+++++|++|..+  +  +.++ |...+ |+          .+......+|.||+|+|..+..
T Consensus       231 PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~----------~~~I~l~~~DlVivTnGs~t~n  295 (576)
T PRK13977        231 PLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGK----------EETIDLTEDDLVFVTNGSITES  295 (576)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCc----------eeEEEecCCCEEEEeCCcCccc
Confidence            3678899999999999999999875  3  2343 54432 21          0112246789999999988744

>PRK07395 L-aspartate oxidase; Provisional

Probab=93.76  E-value=0.12  Score=48.66  Aligned_cols=55  Identities=9%  Similarity=-0.012  Sum_probs=38.5

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeC--CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEG--NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~--~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+.++++ |++|+++++|+++..++  +++. |.+.++            +....+.|+.||+|+|.++
T Consensus       139 ~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~------------g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        139 TLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQ------------GQITWLRAGAVILATGGGG  197 (553)
T ss_pred             HHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEEC------------CeEEEEEcCEEEEcCCCCc
Confidence            355666654 99999999999998763  5543 443222            1233589999999999863

>PRK07236 hypothetical protein; Provisional

Probab=93.74  E-value=0.2  Score=44.78  Aligned_cols=49  Identities=10%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +.+++.+++|++++..+++++|+.++|.               +++||.||.|-|.+|. +.+.+
T Consensus       112 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vIgADG~~S~-vR~~l  160 (386)
T PRK07236        112 AERYHLGETLVGFEQDGDRVTARFADGR---------------RETADLLVGADGGRST-VRAQL  160 (386)
T ss_pred             CcEEEcCCEEEEEEecCCeEEEEECCCC---------------EEEeCEEEECCCCCch-HHHHh
Confidence            4679999999999988888888887773               7999999999999885 44544

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=93.66  E-value=0.26  Score=45.36  Aligned_cols=53  Identities=11%  Similarity=0.136  Sum_probs=42.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++++++++|++++..++++.|.+.+|.               ++++|.||+|+|.-.+.
T Consensus       224 l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~l~~D~vl~a~G~~pn~  276 (466)
T PRK07845        224 LEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGR---------------TVEGSHALMAVGSVPNT  276 (466)
T ss_pred             HHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCc---------------EEEecEEEEeecCCcCC
Confidence            345567889999999999999877777777766552               79999999999976543

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=93.65  E-value=0.23  Score=47.10  Aligned_cols=54  Identities=9%  Similarity=0.047  Sum_probs=39.7

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.+.+. |++++++++|+++...++++. |.   ..++             ....+.|+.||+|+|.++.
T Consensus       139 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        139 LFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             HHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCC-------------cEEEEECCEEEECCCCCcC
Confidence            45555554 899999999999988777653 32   2333             2347999999999998774

>PRK09077 L-aspartate oxidase; Provisional

Probab=93.59  E-value=0.23  Score=46.65  Aligned_cols=57  Identities=19%  Similarity=0.172  Sum_probs=39.3

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeC------CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEG------NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~------~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.++++ |++|+++++|+++...+      +++. |...+.          ..++...|.|+.||+|+|.++.
T Consensus       144 L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~----------~~g~~~~i~Ak~VVlATGG~~~  208 (536)
T PRK09077        144 LVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNR----------NKERVETIRAKFVVLATGGASK  208 (536)
T ss_pred             HHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEEC----------CCCcEEEEecCeEEECCCCCCC
Confidence            55556665 89999999999987653      5553 443211          0123457999999999999773

>PRK02106 choline dehydrogenase; Validated

Probab=93.56  E-value=0.16  Score=47.89  Aligned_cols=60  Identities=20%  Similarity=0.076  Sum_probs=41.1

Q ss_pred             HHHH-HCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHHh
Q 026314            5 GEAE-NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF   75 (240)
Q Consensus         5 ~~A~-~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~~   75 (240)
                      ..|. +.+++|++++.|+.|..++++++ |+..+..           +....+.++.||+|||++ +.+|+...
T Consensus       208 ~~a~~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~-----------~~~~~~~ak~VILaaGai~TP~LLl~S  270 (560)
T PRK02106        208 DPALKRPNLTIVTHALTDRILFEGKRAVGVEYERGG-----------GRETARARREVILSAGAINSPQLLQLS  270 (560)
T ss_pred             ccccCCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCC-----------cEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence            3344 44699999999999998876554 5543321           123357899999999986 45666543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=93.34  E-value=0.33  Score=44.77  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|+.|+..++++.|+..++.           +++.++++|.||+|+|.-.+
T Consensus       230 ~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~-----------g~~~~i~~D~vl~a~G~~p~  285 (475)
T PRK06327        230 AAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDAD-----------GEAQTLEVDKLIVSIGRVPN  285 (475)
T ss_pred             HHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCC-----------CceeEEEcCEEEEccCCccC
Confidence            345567789999999999999877666666543321           12337999999999997554

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=93.30  E-value=0.28  Score=44.14  Aligned_cols=48  Identities=19%  Similarity=0.224  Sum_probs=37.4

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +.+.++++ +.+|+ +.+|++|..+++++. |.|.+|.               .+.||.||+|+|.
T Consensus       101 ~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~---------------~~~a~~vVlaTGt  150 (392)
T PF01134_consen  101 MREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGE---------------EIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSE---------------EEEECEEEE-TTT
T ss_pred             HHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCC---------------EEecCEEEEeccc
Confidence            44555664 67876 689999999998876 9998883               7999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.26  E-value=0.36  Score=44.37  Aligned_cols=54  Identities=17%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..++.+.+++.  +|             ++.++++|.||+|+|.-.+
T Consensus       219 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g-------------~~~~i~~D~vi~a~G~~pn  274 (466)
T PRK07818        219 IAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDG-------------KAQELEADKVLQAIGFAPR  274 (466)
T ss_pred             HHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCC-------------CeEEEEeCEEEECcCcccC
Confidence            455667889999999999999876666655443  33             1236999999999997543

>TIGR02053 MerA mercuric reductase

Probab=93.09  E-value=0.33  Score=44.57  Aligned_cols=54  Identities=9%  Similarity=0.115  Sum_probs=39.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++++++++|+.++..++.+.|++....            ...++++|.||+|+|.-.
T Consensus       213 l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~------------~~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       213 VEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPG------------GQGEVEADELLVATGRRP  266 (463)
T ss_pred             HHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCC------------CceEEEeCEEEEeECCCc
Confidence            345567889999999999999876665555543210            012799999999999643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=93.07  E-value=0.29  Score=44.65  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=37.6

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +++|++++.+++|++|..++..+.+.+.++            ++++++++|++|+|+|...
T Consensus        69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~------------~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDERQTVTVLNRKT------------NEQFEESYDKLILSPGASA  117 (438)
T ss_pred             HhCCCEEEeCCEEEEEECCCCEEEEEECCC------------CcEEeeecCEEEECCCCCC
Confidence            557999999999999988877676665332            1234578999999999854

>PRK10262 thioredoxin reductase; Provisional

Probab=93.03  E-value=0.4  Score=41.63  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.+...+.+++.+ +|++++..++.|+++++.+                .+.+|.||+|+|.+.
T Consensus        70 ~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~----------------~~~~d~vilAtG~~~  117 (321)
T PRK10262         70 HEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG----------------EYTCDALIIATGASA  117 (321)
T ss_pred             HHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC----------------EEEECEEEECCCCCC
Confidence            44566778888764 6888888778888877555                799999999999975

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=92.96  E-value=0.42  Score=45.35  Aligned_cols=55  Identities=11%  Similarity=-0.003  Sum_probs=40.5

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+.+. |+++++++.|+++..+++++. |..   .+|             ....+.|+.||+|+|.++.
T Consensus       137 ~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g-------------~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       137 TLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEG-------------RLVTILADAVVLATGGAGR  196 (580)
T ss_pred             HHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCC-------------cEEEEecCEEEEcCCCCcc
Confidence            355556554 899999999999988777654 332   233             2347999999999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PLN02815 L-aspartate oxidase

Probab=92.94  E-value=0.25  Score=47.02  Aligned_cols=58  Identities=12%  Similarity=0.104  Sum_probs=39.4

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeC-Ce---E-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEG-NC---M-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~-~~---~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++ |++|+++++++++..++ ++   + .|...+..          .+....+.|+.||+|+|.+..
T Consensus       160 ~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        160 ALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTR----------TGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             HHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcC----------CCeEEEEEeceEEEcCCccee
Confidence            355666665 89999999999998753 32   3 24432110          123456899999999998874

>PRK06370 mercuric reductase; Validated

Probab=92.80  E-value=0.4  Score=44.01  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=39.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++++..++++.|+..  ++              ..++++|.||+|+|.-.+
T Consensus       218 l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~--------------~~~i~~D~Vi~A~G~~pn  272 (463)
T PRK06370        218 VREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGG--------------APEITGSHILVAVGRVPN  272 (463)
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCC--------------ceEEEeCEEEECcCCCcC
Confidence            445667889999999999999877665544432  22              126999999999996543

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=92.76  E-value=0.44  Score=43.71  Aligned_cols=53  Identities=13%  Similarity=0.093  Sum_probs=39.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++++..++.+.++++ ++             +.++++|.||+|+|.-.+
T Consensus       217 l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~-g~-------------~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        217 LREKLENDGVKIFTGAALKGLNSYKKQALFEYE-GS-------------IQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHCCCEEEECCEEEEEEEcCCEEEEEEC-Cc-------------eEEEEeCEEEEecCCccC
Confidence            445677889999999999999876665555542 31             226999999999997554

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=92.47  E-value=0.29  Score=44.20  Aligned_cols=53  Identities=25%  Similarity=0.265  Sum_probs=42.8

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +..+++|+++.+++.|++++.+    .|++++|+             + .|.|+.||=|||.-++.+.+.+
T Consensus       217 ~~L~~~GV~v~l~~~Vt~v~~~----~v~~~~g~-------------~-~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         217 RALEKLGVEVLLGTPVTEVTPD----GVTLKDGE-------------E-EIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHCCCEEEcCCceEEECCC----cEEEccCC-------------e-eEecCEEEEcCCCcCChhhhhc
Confidence            4567889999999999998753    25565562             0 4999999999999999999874

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=92.31  E-value=0.55  Score=43.21  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=39.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|+++++++.|++++..++++.++.....          .+++.++++|.||+|+|.-.
T Consensus       221 l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~----------~g~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        221 LQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAA----------GGAAETLQADYVLVAIGRRP  276 (466)
T ss_pred             HHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcC----------CCceeEEEeCEEEEccCCcc
Confidence            445667889999999999999876666654432100          01223699999999999754

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=92.26  E-value=0.3  Score=44.42  Aligned_cols=48  Identities=19%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             hhHH-HHHCCcEEEcCceEEEEEEeCCeEEEEecC-CcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGE-AENHGTTFSNNTSVIGGHLEGNCMNVYISE-SKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~-A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~-g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ++++ +++.|..|..+.+|..|.+.+++|+|++.+ +                +..+|++|++-=.
T Consensus       211 la~Afa~ql~~~I~~~~~V~rI~q~~~gV~Vt~~~~~----------------~~~ad~~i~tiPl  260 (450)
T COG1231         211 LAEAFAKQLGTRILLNEPVRRIDQDGDGVTVTADDVG----------------QYVADYVLVTIPL  260 (450)
T ss_pred             HHHHHHHHhhceEEecCceeeEEEcCCeEEEEeCCcc----------------eEEecEEEEecCH
Confidence            3444 356699999999999999999999999988 5                8999999998543

>PRK07846 mycothione reductase; Reviewed

Probab=92.22  E-value=0.48  Score=43.43  Aligned_cols=48  Identities=10%  Similarity=0.213  Sum_probs=38.9

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      .+.|++++++++|++++..++++.|++.++.               ++++|.||+|+|.-.+.
T Consensus       217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn~  264 (451)
T PRK07846        217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGS---------------TVEADVLLVATGRVPNG  264 (451)
T ss_pred             HhcCeEEEeCCEEEEEEEcCCEEEEEECCCc---------------EeecCEEEEEECCccCc
Confidence            4578999999999999877666777776652               79999999999986543

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=92.20  E-value=0.47  Score=42.27  Aligned_cols=45  Identities=22%  Similarity=0.053  Sum_probs=35.5

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .++++|++++.+++|+++..+..  .|+++++                .+++|+||+|+|...
T Consensus        67 ~~~~~gv~~~~~~~V~~id~~~~--~v~~~~~----------------~~~yd~LVlATG~~~  111 (377)
T PRK04965         67 FAEQFNLRLFPHTWVTDIDAEAQ--VVKSQGN----------------QWQYDKLVLATGASA  111 (377)
T ss_pred             HHHhCCCEEECCCEEEEEECCCC--EEEECCe----------------EEeCCEEEECCCCCC
Confidence            45678999999999999987654  4555443                799999999999743

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=92.16  E-value=0.58  Score=41.32  Aligned_cols=54  Identities=17%  Similarity=0.232  Sum_probs=41.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +.+..+++|++++++++|+.+..  +  .|++++|.               ++.+|.||+|+|...+......
T Consensus       197 ~~~~l~~~gV~v~~~~~v~~i~~--~--~v~~~~g~---------------~i~~D~vi~a~G~~p~~~l~~~  250 (364)
T TIGR03169       197 VLRLLARRGIEVHEGAPVTRGPD--G--ALILADGR---------------TLPADAILWATGARAPPWLAES  250 (364)
T ss_pred             HHHHHHHCCCEEEeCCeeEEEcC--C--eEEeCCCC---------------EEecCEEEEccCCChhhHHHHc
Confidence            34567789999999999998853  3  45565553               7999999999998776655544

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02529 lysine-specific histone demethylase 1

Probab=92.15  E-value=0.33  Score=47.34  Aligned_cols=42  Identities=12%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314           10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+..|+++++|+.|...+++|+|++.++                +++||+||+|.=+.
T Consensus       365 ~~L~IrLnt~V~~I~~~~dGVtV~t~~~----------------~~~AD~VIVTVPlg  406 (738)
T PLN02529        365 EGVPIFYGKTVDTIKYGNDGVEVIAGSQ----------------VFQADMVLCTVPLG  406 (738)
T ss_pred             hcCCEEcCCceeEEEEcCCeEEEEECCE----------------EEEcCEEEECCCHH
Confidence            3667999999999999988999887544                79999999997543

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=92.06  E-value=0.53  Score=43.13  Aligned_cols=54  Identities=9%  Similarity=0.036  Sum_probs=40.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|+++++++.|+.++..+++ +.|+.+++.              ..+++|.||+|+|.-.+.
T Consensus       213 ~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~--------------~~i~~D~vi~a~G~~pn~  267 (450)
T TIGR01421       213 ITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGK--------------SIDDVDELIWAIGRKPNT  267 (450)
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCc--------------EEEEcCEEEEeeCCCcCc
Confidence            445567889999999999999875443 566665551              169999999999976543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=91.96  E-value=0.48  Score=48.74  Aligned_cols=52  Identities=15%  Similarity=0.116  Sum_probs=36.4

Q ss_pred             CCcEEEcCceEEEEEEeC-----C----eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314           10 HGTTFSNNTSVIGGHLEG-----N----CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~-----~----~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|++|+++++|+++..++     +    ++. |...+..        ...|+...|.|+.||+|+|.+..
T Consensus       560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~--------~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQAS--------DASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecc--------cCCCcEEEEEeceEEEecCCccc
Confidence            499999999999998753     2    453 4443210        00133557999999999999886

>PLN02568 polyamine oxidase

Probab=91.91  E-value=0.43  Score=44.91  Aligned_cols=43  Identities=12%  Similarity=0.131  Sum_probs=36.5

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+|+++++|+.|...+++|+|++.+|.               +++||+||+|.=+..
T Consensus       254 ~~~I~ln~~V~~I~~~~~~v~V~~~dG~---------------~~~aD~VIvTvPl~v  296 (539)
T PLN02568        254 PGTIQLGRKVTRIEWQDEPVKLHFADGS---------------TMTADHVIVTVSLGV  296 (539)
T ss_pred             CCEEEeCCeEEEEEEeCCeEEEEEcCCC---------------EEEcCEEEEcCCHHH
Confidence            3479999999999999889999988773               699999999987543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=91.85  E-value=0.57  Score=43.50  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=40.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|+++++++.|+.++..+++ ..|++.++.               ++++|.||+|+|.-.+
T Consensus       237 l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       237 LTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGK---------------TLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCC---------------EEEcCEEEEeeCCCcC
Confidence            455677899999999999999876443 456665552               7999999999997544

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=91.80  E-value=0.52  Score=42.66  Aligned_cols=47  Identities=21%  Similarity=0.176  Sum_probs=35.8

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEe--cCEEEEcCCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLI--PKLVVNSAGLS   67 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~--a~~VV~aaG~w   67 (240)
                      ..++|++++.+++|+++...+..+.+.+..+.              .+++  +|+||+|+|..
T Consensus        54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~--------------~~~~~~yd~lIiATG~~  102 (427)
T TIGR03385        54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKTN--------------ETYEESYDYLILSPGAS  102 (427)
T ss_pred             HHhcCCeEEecCEEEEEECCCCEEEEEECCCC--------------CEEecCCCEEEECCCCC
Confidence            37789999999999999877776766653221              1566  99999999974

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=91.72  E-value=0.56  Score=42.02  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=43.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ++.+..+++|-.|+++++|+.+.+.++ .+.|+..+.+          +++..+++||.+.+|.|=
T Consensus       257 ~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak----------~~k~~tle~DvlLVsiGR  312 (506)
T KOG1335|consen  257 AFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAK----------TGKKETLECDVLLVSIGR  312 (506)
T ss_pred             HHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecC----------CCceeEEEeeEEEEEccC
Confidence            345667789999999999999999887 5666655443          244668999999999984

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=91.71  E-value=0.64  Score=44.21  Aligned_cols=57  Identities=9%  Similarity=0.048  Sum_probs=38.5

Q ss_pred             hhHHHHHCC----cEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHG----TTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~G----a~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.+++++    +++++++.++.+... ++++. |...+..          .++...+.|+.||+|+|.++.
T Consensus       139 L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~----------~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        139 LDEQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLF----------TMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             HHHHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECC----------CCcEEEEECCEEEECCCCCcC
Confidence            455555544    789999999998875 45553 5442210          122346899999999999884

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=91.68  E-value=0.6  Score=43.29  Aligned_cols=55  Identities=22%  Similarity=0.170  Sum_probs=40.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|++++.++.++..++.+.|+..++..            ..++++|.||+|.|.-.+
T Consensus       226 l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~------------~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       226 VGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTN------------GIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCc------------ceEEEeCEEEEEecCCcC
Confidence            3456678899999999999998766666665544310            126999999999997543

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.63  E-value=0.66  Score=43.19  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=41.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|+++++++.|+.++..++.+.|.+.+|.               ++.+|.|++|.|.-.+
T Consensus       228 l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~---------------~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        228 VVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGT---------------TELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCC---------------EEEcCEEEEeeCCCCC
Confidence            455677889999999999999876666666665552               6899999999998654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=91.57  E-value=0.053  Score=49.36  Aligned_cols=59  Identities=15%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+++.|++++.++.|+++.++++++. |++.+..           | ..+|.|+.||-|+|-  ..|+..+
T Consensus        96 l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~-----------g-~~~i~A~~~IDaTG~--g~l~~~a  155 (428)
T PF12831_consen   96 LDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKS-----------G-RKEIRAKVFIDATGD--GDLAALA  155 (428)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccc-----------c-ccccccccccccccc--ccccccc
Confidence            44555778999999999999999887764 5553310           1 337999999999993  3555555

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=91.50  E-value=0.63  Score=42.31  Aligned_cols=51  Identities=10%  Similarity=0.059  Sum_probs=37.0

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +..++.|++++.+++|++|..++..+.++...+            +.+..+++|++|+|+|..
T Consensus        64 ~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~------------~~~~~~~yd~lviAtG~~  114 (444)
T PRK09564         64 EEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKT------------GSIFNDTYDKLMIATGAR  114 (444)
T ss_pred             HHHHHCCCeEEecCEEEEEECCCCEEEEEECCC------------CCEEEecCCEEEECCCCC
Confidence            446778999999999999988777676654221            112234499999999974

>PLN02576 protoporphyrinogen oxidase

Probab=91.48  E-value=0.53  Score=43.45  Aligned_cols=44  Identities=18%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             HHCC-cEEEcCceEEEEEEeCCe-EEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            8 ENHG-TTFSNNTSVIGGHLEGNC-MNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         8 ~~~G-a~i~~~~~V~~i~~~~~~-~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      ++.+ .+|+++++|+.|++.+++ |.|+..  +|              +.+++||+||+|.=
T Consensus       247 ~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g--------------~~~~~ad~VI~a~P  294 (496)
T PLN02576        247 KRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEG--------------KVNVTAKAVVMTAP  294 (496)
T ss_pred             HhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCC--------------ceeEEeCEEEECCC
Confidence            4456 789999999999988876 766543  33              12699999999985

>TIGR03452 mycothione_red mycothione reductase

Probab=91.29  E-value=0.77  Score=42.10  Aligned_cols=48  Identities=8%  Similarity=0.168  Sum_probs=38.4

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      ..+.|.+++++++|++++..++++.|++.+|.               ++++|.|++|+|.-.+
T Consensus       219 ~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       219 IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGS---------------TVTADVLLVATGRVPN  266 (452)
T ss_pred             HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCC---------------EEEcCEEEEeeccCcC
Confidence            34568999999999999877767777766552               6999999999997554

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PLN02985 squalene monooxygenase

Probab=91.27  E-value=0.81  Score=42.81  Aligned_cols=59  Identities=19%  Similarity=0.175  Sum_probs=39.5

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeE-EEE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCM-NVY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~-~V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++. |++++.+ .|+++..+++.+ .|+  +++|             ++.+++||.||.|.|.+| .+.+.+
T Consensus       152 ~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG-------------~~~~~~AdLVVgADG~~S-~vR~~l  214 (514)
T PLN02985        152 RLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAG-------------EETTALAPLTVVCDGCYS-NLRRSL  214 (514)
T ss_pred             HHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCC-------------CEEEEECCEEEECCCCch-HHHHHh
Confidence            456667666 6898864 677776666543 344  3333             234688999999999987 455555

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=91.19  E-value=0.67  Score=41.55  Aligned_cols=60  Identities=13%  Similarity=0.091  Sum_probs=43.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEE-eCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHL-EGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+++.+.|++++++.+++.+.. .++.+.|+.. +|+             +.+++||.||-|-|.+|. +.+.+
T Consensus       108 ~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~-------------~~~i~adlvIGADG~~S~-VR~~l  169 (390)
T TIGR02360       108 DLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGE-------------RHRLDCDFIAGCDGFHGV-SRASI  169 (390)
T ss_pred             HHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCe-------------EEEEEeCEEEECCCCchh-hHHhc
Confidence            356677788999999999888765 3445556553 452             236999999999999884 55555

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=91.13  E-value=0.84  Score=38.68  Aligned_cols=57  Identities=16%  Similarity=0.043  Sum_probs=38.2

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.++++ |+++++++.|+++...+....++..+.          +.+++.++++|.||.|+|.-.+
T Consensus       182 ~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~----------~~g~~~~i~~D~vi~a~G~~~~  239 (300)
T TIGR01292       182 LLDRLRKNPNIEFLWNSTVKEIVGDNKVEGVKIKNT----------VTGEEEELKVDGVFIAIGHEPN  239 (300)
T ss_pred             HHHHHHhCCCeEEEeccEEEEEEccCcEEEEEEEec----------CCCceEEEEccEEEEeeCCCCC
Confidence            34556677 999999999999986543223443221          0123457999999999996543

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=91.11  E-value=0.68  Score=45.60  Aligned_cols=58  Identities=22%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|+++++++.|+.|...+....|++++|.               ++.+|.||.|+|.-.+. |++.+
T Consensus       188 l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~---------------~i~~D~Vi~a~G~~Pn~~la~~~  246 (785)
T TIGR02374       188 LQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGS---------------SLEADLIVMAAGIRPNDELAVSA  246 (785)
T ss_pred             HHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCC---------------EEEcCEEEECCCCCcCcHHHHhc
Confidence            445667899999999999998765444457777773               79999999999986543 55544

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=91.03  E-value=0.44  Score=43.63  Aligned_cols=51  Identities=20%  Similarity=0.223  Sum_probs=39.4

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ++..++|+++++|+.|.+...++.+.+.+|.               +++||.||+++=+  ..+..++
T Consensus       223 ~~l~~~i~~~~~V~~i~~~~~~~~~~~~~g~---------------~~~~D~VI~t~p~--~~l~~ll  273 (444)
T COG1232         223 EKLEAKIRTGTEVTKIDKKGAGKTIVDVGGE---------------KITADGVISTAPL--PELARLL  273 (444)
T ss_pred             HHhhhceeecceeeEEEEcCCccEEEEcCCc---------------eEEcceEEEcCCH--HHHHHHc
Confidence            4446779999999999998776776666663               7999999999864  5566666

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.00  E-value=0.75  Score=41.77  Aligned_cols=53  Identities=23%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .+..+++|++++++++|+++..  +  .|.+++|+               ++++|.||.|+|.-.+.+.+.+
T Consensus       235 ~~~L~~~gV~v~~~~~v~~v~~--~--~v~~~~g~---------------~i~~d~vi~~~G~~~~~~~~~~  287 (424)
T PTZ00318        235 QRRLRRLGVDIRTKTAVKEVLD--K--EVVLKDGE---------------VIPTGLVVWSTGVGPGPLTKQL  287 (424)
T ss_pred             HHHHHHCCCEEEeCCeEEEEeC--C--EEEECCCC---------------EEEccEEEEccCCCCcchhhhc
Confidence            4556789999999999998863  3  35566663               7999999999998777666655

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=90.95  E-value=0.87  Score=41.91  Aligned_cols=54  Identities=22%  Similarity=0.184  Sum_probs=38.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|+.++.. ++++. +.+.+|+             +.++++|.||+|+|.-.+
T Consensus       227 l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~-------------~~~i~~D~vi~a~G~~p~  282 (472)
T PRK05976        227 VARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGE-------------EKTLEADKVLVSVGRRPN  282 (472)
T ss_pred             HHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCc-------------eEEEEeCEEEEeeCCccC
Confidence            345667889999999999999752 34443 4444441             236999999999998543

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=90.63  E-value=0.77  Score=42.24  Aligned_cols=51  Identities=18%  Similarity=0.166  Sum_probs=40.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +.+..++.|.+++++++|+.++..++++.|+.+++.             +.+++||.|++|+|=
T Consensus       220 ~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~-------------~~~~~ad~vLvAiGR  270 (454)
T COG1249         220 LTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGE-------------GGTIEADAVLVAIGR  270 (454)
T ss_pred             HHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCC-------------CCEEEeeEEEEccCC
Confidence            445566678999999999999988777777777662             116889999999995

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=90.55  E-value=0.45  Score=42.76  Aligned_cols=49  Identities=10%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             HCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            9 NHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +..+++..+|+|.+++.++++ +.+.+.+.          ++++.++++.|.||.|+|-.
T Consensus       290 ~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~----------~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         290 KPDVRLLSLSEVQSVEPAGDGRYRLTLRHH----------ETGELETVETDAVILATGYR  339 (436)
T ss_pred             CCCeeeccccceeeeecCCCceEEEEEeec----------cCCCceEEEeeEEEEecccc
Confidence            346899999999999999865 77766554          24667789999999999975

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=90.54  E-value=0.6  Score=41.23  Aligned_cols=47  Identities=15%  Similarity=0.199  Sum_probs=36.1

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.++++|++++. .+|++|...+.  .|++++|.               ++++|++|+|+|.-.
T Consensus        61 ~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~---------------~~~yD~LviAtG~~~  107 (364)
T TIGR03169        61 RRLARQAGARFVI-AEATGIDPDRR--KVLLANRP---------------PLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHHHHhcCCEEEE-EEEEEEecccC--EEEECCCC---------------cccccEEEEccCCCC
Confidence            3456678999986 58999987665  46666663               699999999999754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PLN02661 Putative thiazole synthesis

Probab=90.50  E-value=0.99  Score=40.13  Aligned_cols=59  Identities=15%  Similarity=0.183  Sum_probs=39.7

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEec------CCcccccCCCCCCC-CCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYIS------ESKNLRNWDGVSPL-QPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~------~g~~~~~~~~~~~~-~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.+.+ .|+++++++.|+++..+++++. |.+.      ++.        .+. .+...|+|+.||.|+|.-..
T Consensus       178 Li~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~--------~~s~~dp~~I~AkaVVlATGh~g~  245 (357)
T PLN02661        178 IMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHD--------TQSCMDPNVMEAKVVVSSCGHDGP  245 (357)
T ss_pred             HHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccC--------CCCccceeEEECCEEEEcCCCCCc
Confidence            5555554 6899999999999988877653 4431      110        000 12347999999999996553

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=90.16  E-value=0.81  Score=45.09  Aligned_cols=47  Identities=21%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +..+++|++++.+++|+.|.....  .|++.+|.               ++++|+||+|+|...
T Consensus        62 ~~~~~~gv~~~~g~~V~~Id~~~k--~V~~~~g~---------------~~~yD~LVlATGs~p  108 (785)
T TIGR02374        62 DWYEKHGITLYTGETVIQIDTDQK--QVITDAGR---------------TLSYDKLILATGSYP  108 (785)
T ss_pred             HHHHHCCCEEEcCCeEEEEECCCC--EEEECCCc---------------EeeCCEEEECCCCCc
Confidence            345678999999999999987643  56676663               699999999999753

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=89.88  E-value=0.27  Score=44.48  Aligned_cols=58  Identities=21%  Similarity=0.255  Sum_probs=47.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKR   74 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~   74 (240)
                      +-++.-++.|+.++.+..|.++.+..+.+.++.++|.               +++.|.||+|.|.--+. |++.
T Consensus       398 wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~---------------~l~tD~vVvavG~ePN~ela~~  456 (659)
T KOG1346|consen  398 WTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGS---------------ELRTDLVVVAVGEEPNSELAEA  456 (659)
T ss_pred             HHHHHHHhcCceeccchhhhhhhhhccceEEEecCCC---------------eeeeeeEEEEecCCCchhhccc
Confidence            4456778889999999999999888777888999984               89999999999976543 4443

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=89.80  E-value=20  Score=34.58  Aligned_cols=65  Identities=15%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             hhHHHHHCCc--EEEcCceEEEEEEeCC---eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENHGT--TFSNNTSVIGGHLEGN---CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga--~i~~~~~V~~i~~~~~---~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |.+.+++.|.  +++.+++|++++..++   .++|+..+...       ...|++.+++||.||=|=|+.| .+.+.+
T Consensus       147 L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~-------~~~g~~~tv~A~~lVGaDGa~S-~VR~~l  216 (634)
T PRK08294        147 FLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDG-------EHEGEEETVRAKYVVGCDGARS-RVRKAI  216 (634)
T ss_pred             HHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCC-------CCCCceEEEEeCEEEECCCCch-HHHHhc
Confidence            5566777775  7788999999987642   46666543200       0012345899999999999966 566666

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=89.44  E-value=1.2  Score=40.05  Aligned_cols=45  Identities=4%  Similarity=0.071  Sum_probs=35.6

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+++|++++.+++|+.+.....  .|.+++|.               ++++|++|+|+|...
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~--~v~~~~g~---------------~~~yd~LViATGs~~  112 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTR--ELVLTNGE---------------SWHWDQLFIATGAAA  112 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCC--EEEECCCC---------------EEEcCEEEEccCCCC
Confidence            3567999999999999987654  35555552               799999999999865

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=89.35  E-value=2.1  Score=35.60  Aligned_cols=65  Identities=23%  Similarity=0.277  Sum_probs=44.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC-eEE-EEecCCcccccCCCCCCC---CCceeEecCEEEEcCCCChHHHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMN-VYISESKNLRNWDGVSPL---QPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~-V~t~~g~~~~~~~~~~~~---~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      .|+..|.+.||+|++.+.|.++...++ ++. |.++       |.-+...   =+..+|+|+.||-|+|--+.-..-
T Consensus       114 kl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvN-------Wt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~  183 (262)
T COG1635         114 KLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVN-------WTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF  183 (262)
T ss_pred             HHHHHHHhcCceeeecceEEEEEEecCCceEEEEEe-------cchhhhcccccCcceeeEEEEEeCCCCchHHHHH
Confidence            367788899999999999999887776 553 3221       1111111   123469999999999987765433

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.19  E-value=1.1  Score=41.17  Aligned_cols=54  Identities=17%  Similarity=0.039  Sum_probs=41.5

Q ss_pred             hHHHHHCC--cEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHG--TTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~G--a~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ...|+..+  ..|+++++|..++..+ +.|+|.+.++.           +++.+..+|.||+|+|-+.
T Consensus        97 ~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~-----------~~~~~~ifd~VvVctGh~~  153 (448)
T KOG1399|consen   97 RDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNG-----------TQIEEEIFDAVVVCTGHYV  153 (448)
T ss_pred             HHHHHhcChhhheEecccEEEEeeccCCceeEEEecCC-----------cceeEEEeeEEEEcccCcC
Confidence            34455556  4899999999999888 79999886652           1134677999999999985

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=89.11  E-value=1.4  Score=43.81  Aligned_cols=58  Identities=17%  Similarity=0.265  Sum_probs=44.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC-C-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG-N-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|+++++++.|++|...+ + ...|++++|.               ++++|.||+|+|.-.+. |++.+
T Consensus       193 l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~---------------~i~~D~Vv~A~G~rPn~~L~~~~  253 (847)
T PRK14989        193 LRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGS---------------ELEVDFIVFSTGIRPQDKLATQC  253 (847)
T ss_pred             HHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCC---------------EEEcCEEEECCCcccCchHHhhc
Confidence            4566778999999999999997643 2 3457777773               79999999999987654 55544

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=88.92  E-value=0.56  Score=41.11  Aligned_cols=54  Identities=17%  Similarity=0.081  Sum_probs=39.1

Q ss_pred             CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH---HHHHHh
Q 026314           11 GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP---ALAKRF   75 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~---~l~~~~   75 (240)
                      =++|..+++|++|.+.++++. |.--+.           +|+...+.++.||.|+|.++-   .+++..
T Consensus       159 ~~ki~~nskvv~il~n~gkVsgVeymd~-----------sgek~~~~~~~VVlatGGf~ysd~~lLKey  216 (477)
T KOG2404|consen  159 LVKILLNSKVVDILRNNGKVSGVEYMDA-----------SGEKSKIIGDAVVLATGGFGYSDKELLKEY  216 (477)
T ss_pred             HHhhhhcceeeeeecCCCeEEEEEEEcC-----------CCCccceecCceEEecCCcCcChHHHHHHh
Confidence            368999999999998888775 544332           133447899999999998763   355544

>PLN03000 amine oxidase

Probab=88.90  E-value=0.77  Score=45.48  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=34.0

Q ss_pred             EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           13 TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        13 ~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|+++++|+.|...+++|+|++.++                +++||+||+|.=+..
T Consensus       392 ~I~Ln~~Vt~I~~~~dgV~V~~~~~----------------~~~AD~VIvTVPlgV  431 (881)
T PLN03000        392 PILYEKTVQTIRYGSNGVKVIAGNQ----------------VYEGDMVLCTVPLGV  431 (881)
T ss_pred             CcccCCcEEEEEECCCeEEEEECCc----------------EEEeceEEEcCCHHH
Confidence            5999999999999888999987654                799999999985543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.84  E-value=1.6  Score=40.32  Aligned_cols=54  Identities=13%  Similarity=0.074  Sum_probs=39.0

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+..+++ +++++++.|+.++..++++.|+..++.           +++.++++|.||+|+|.-.+
T Consensus       222 ~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~-----------~~~~~i~~D~vi~a~G~~pn  275 (471)
T PRK06467        222 TKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKK-----------APAEPQRYDAVLVAVGRVPN  275 (471)
T ss_pred             HHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCC-----------CcceEEEeCEEEEeeccccc
Confidence            4445566 999999999999877777766543321           11236999999999998554

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=88.83  E-value=1.3  Score=40.02  Aligned_cols=56  Identities=20%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++++++++|+++...+ .+ +.+.+|+               ++.+|.||.|+|...+ .+++.+
T Consensus       185 ~~~~l~~~gV~v~~~~~v~~i~~~~-~~-v~~~~g~---------------~i~~D~vi~a~G~~p~~~~l~~~  241 (427)
T TIGR03385       185 VEEELKKHEINLRLNEEVDSIEGEE-RV-KVFTSGG---------------VYQADMVILATGIKPNSELAKDS  241 (427)
T ss_pred             HHHHHHHcCCEEEeCCEEEEEecCC-CE-EEEcCCC---------------EEEeCEEEECCCccCCHHHHHhc
Confidence            3456678899999999999997543 33 3444452               7999999999998765 455554

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=88.78  E-value=0.43  Score=42.21  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=33.4

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      .|++....++.+++|++|+...+    .|+|++.+.           .|...++.|+.||+++|
T Consensus       104 va~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~-----------~g~~~~~~ar~vVla~G  156 (341)
T PF13434_consen  104 VAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS-----------DGDGETYRARNVVLATG  156 (341)
T ss_dssp             HHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET-----------TS-EEEEEESEEEE---
T ss_pred             HHHhCCCceEECCEEEEEEEecCCCccEEEEEEeec-----------CCCeeEEEeCeEEECcC
Confidence            45666766888999999988764    488888422           12234899999999999

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=88.72  E-value=0.39  Score=41.04  Aligned_cols=45  Identities=13%  Similarity=-0.105  Sum_probs=37.5

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      ....-.+|.++++|+.|.+.++.|++++++|.+              ...+|.||+|.=
T Consensus       113 ~LAtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~--------------~~~~d~vvla~P  157 (331)
T COG3380         113 FLATDLTVVLETRVTEVARTDNDWTLHTDDGTR--------------HTQFDDVVLAIP  157 (331)
T ss_pred             HHhccchhhhhhhhhhheecCCeeEEEecCCCc--------------ccccceEEEecC
Confidence            444577899999999999999999999988743              678999999874

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=88.62  E-value=0.59  Score=42.87  Aligned_cols=54  Identities=20%  Similarity=0.171  Sum_probs=36.3

Q ss_pred             hHHHHHCCc--EEEcCceEEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            4 QGEAENHGT--TFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         4 ~~~A~~~Ga--~i~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      ...+.+.|.  +|..++.|+.+..+.  +.|.|+++++..            . +++||+||+|+|.+..-
T Consensus        89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~------------~-~~~a~~vV~ATG~~~~P  146 (443)
T COG2072          89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGT------------G-ELTADFVVVATGHLSEP  146 (443)
T ss_pred             HHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCe------------e-eEecCEEEEeecCCCCC
Confidence            344555664  556666666655544  589999988731            1 27799999999996643

>PTZ00058 glutathione reductase; Provisional

Probab=88.27  E-value=1.9  Score=40.79  Aligned_cols=53  Identities=11%  Similarity=0.163  Sum_probs=38.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|+++++++.|++++..++ ++.+...++.              .++++|.|++|+|.-.+
T Consensus       284 l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~--------------~~i~aD~VlvA~Gr~Pn  337 (561)
T PTZ00058        284 LENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGR--------------KYEHFDYVIYCVGRSPN  337 (561)
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCC--------------EEEECCEEEECcCCCCC
Confidence            44566788999999999999986543 4555443331              16999999999996543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=88.20  E-value=1.6  Score=40.83  Aligned_cols=56  Identities=13%  Similarity=0.059  Sum_probs=39.4

Q ss_pred             hHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            4 QGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+..++ +|++|+.++.|+.++..++++. |++.++.          .+++.+++||.||+|.|.-.+
T Consensus       394 ~~~l~~~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~----------~~~~~~i~~D~vi~a~G~~Pn  451 (515)
T TIGR03140       394 QDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRN----------SGEEKQLDLDGVFVQIGLVPN  451 (515)
T ss_pred             HHHHhcCCCCEEEECCeeEEEEcCCCEEEEEEEEECC----------CCcEEEEEcCEEEEEeCCcCC
Confidence            344444 5999999999999987656554 6654331          122347999999999997553

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=88.08  E-value=1.4  Score=43.81  Aligned_cols=46  Identities=15%  Similarity=0.115  Sum_probs=36.5

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ..+++|++++.+++|+.|.....  .|++++|.               ++++|++|+|+|.+.
T Consensus        68 ~~~~~gI~~~~g~~V~~Id~~~~--~V~~~~G~---------------~i~yD~LVIATGs~p  113 (847)
T PRK14989         68 FYEKHGIKVLVGERAITINRQEK--VIHSSAGR---------------TVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHhCCCEEEcCCEEEEEeCCCc--EEEECCCc---------------EEECCEEEECCCCCc
Confidence            45678999999999999976533  46676663               699999999999753

>TIGR02462 pyranose_ox pyranose oxidase

Probab=87.82  E-value=1.3  Score=41.77  Aligned_cols=56  Identities=9%  Similarity=0.067  Sum_probs=37.8

Q ss_pred             CC-cEEEcCceEEEEEEeC---CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC-CChHHHHHHh
Q 026314           10 HG-TTFSNNTSVIGGHLEG---NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG-LSAPALAKRF   75 (240)
Q Consensus        10 ~G-a~i~~~~~V~~i~~~~---~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG-~wa~~l~~~~   75 (240)
                      .| ++|+.++.|+.|+...   ++++ |+..+-          ..++.++++|+.||+||| ..+.+|+-+.
T Consensus       226 ~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~----------~~g~~~~v~A~~vVLAagaIetpRLLL~S  287 (544)
T TIGR02462       226 SERFTLLTNHRCTRLVRNETNESEIEAALVRDL----------LSGDRFEIKADVYVLACGAVHNPQILVNS  287 (544)
T ss_pred             CCCEEEEcCCEEEEEEeCCCCCceeEEEEEEEC----------CCCcEEEEECCEEEEccCchhhHHHHHhC
Confidence            44 9999999999998764   2343 432211          013456799999999996 5566676554

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=87.70  E-value=0.76  Score=36.52  Aligned_cols=52  Identities=15%  Similarity=0.188  Sum_probs=36.1

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeE-----EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCM-----NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~-----~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+...+.+++++.+++|.++....+.+     .+.....            ++..++.+|+||+|+|..
T Consensus        65 ~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~d~lviAtG~~  121 (201)
T PF07992_consen   65 VDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVET------------GDGREIKYDYLVIATGSR  121 (201)
T ss_dssp             HHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEET------------TTEEEEEEEEEEEESTEE
T ss_pred             ccccccceEEEeeccccccccccccccccCcccceeecc------------CCceEecCCeeeecCccc
Confidence            344567899999999999998877742     2221111            112389999999999964

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=87.52  E-value=2.2  Score=42.81  Aligned_cols=57  Identities=12%  Similarity=0.007  Sum_probs=37.5

Q ss_pred             hhHHHHHC----CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENH----GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~----Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.++++    ++++++++.++++..+++++. |..-+.          ..|+.+.+.|+.||+|+|.+..
T Consensus       145 L~~~l~~~~~~~~i~~~~~~~~~~Li~~~g~v~Gv~~~~~----------~~g~~~~i~AkaVILATGG~g~  206 (897)
T PRK13800        145 LYRVLRQRSMRERIRIENRLMPVRVLTEGGRAVGAAALNT----------RTGEFVTVGAKAVILATGPCGR  206 (897)
T ss_pred             HHHHHHHhhhcCCcEEEeceeeEEEEeeCCEEEEEEEEec----------CCCcEEEEECCEEEECCCcccc
Confidence            44555544    678888888888877677653 433111          0123557999999999999763

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=87.28  E-value=2.1  Score=40.38  Aligned_cols=64  Identities=20%  Similarity=0.024  Sum_probs=44.0

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCC-CceeEecCEEEEcCCCChHH-HHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQ-PELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~-~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      ++...|.+++ .+|.+++.|+.|..++++++ |+...+.          ++ .++.+.++.||+|||.+.+. |+...
T Consensus       207 a~l~~a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~----------~~~~~~~~a~~~viL~AGai~Sp~LL~~S  274 (542)
T COG2303         207 AYLKPALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGD----------GGTIETAVAAREVVLAAGAINSPKLLLLS  274 (542)
T ss_pred             hcchhHhcCCceEEecCCEEEEEEEECCeeEEEEEEeCC----------CCceEEEecCceEEEeccccCCHHHHHhc
Confidence            3455566665 89999999999999998764 4443220          01 24567899999999988644 44443

>PRK10262 thioredoxin reductase; Provisional

Probab=87.19  E-value=1.5  Score=38.08  Aligned_cols=57  Identities=14%  Similarity=0.072  Sum_probs=38.1

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +..++.|+++++++.|+++...++++ .|+..++..         .++..++.+|.||.|.|.-.+.
T Consensus       193 ~~l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~~~---------~~~~~~i~~D~vv~a~G~~p~~  250 (321)
T PRK10262        193 DKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIGHSPNT  250 (321)
T ss_pred             hhccCCCeEEEeCCEEEEEEcCCccEEEEEEEEcCC---------CCeEEEEECCEEEEEeCCccCh
Confidence            34456799999999999997655443 244433210         0123369999999999986554

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=87.17  E-value=1.1  Score=40.99  Aligned_cols=49  Identities=29%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +...-+++|++|+.++.+.+++... +.+. |.+.+|.               ++.||.||.+.|+
T Consensus       261 ~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~---------------~l~adlvv~GiG~  311 (478)
T KOG1336|consen  261 YEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK---------------TLEADLVVVGIGI  311 (478)
T ss_pred             HHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCC---------------EeccCeEEEeecc
Confidence            4556788999999999999998776 4454 8998884               7999999999997

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=87.16  E-value=2.5  Score=38.98  Aligned_cols=67  Identities=21%  Similarity=0.191  Sum_probs=44.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEec-----CCcccccCCCCCCCCCceeEecCEEEEcCCCChH--HHHHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS-----ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP--ALAKR   74 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~-----~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~--~l~~~   74 (240)
                      ..+.+++.|++|++++.++.|...+++++ |+..     +|.      ..-..+++.++.||.||+|.|.-.+  .+++.
T Consensus       335 ~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~------~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~  408 (471)
T PRK12810        335 EVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGD------FEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQ  408 (471)
T ss_pred             HHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCC------ccccCCceEEEECCEEEECcCcCCCchhhccc
Confidence            35667889999999999999976566653 4332     110      0011244568999999999996543  35443


Q ss_pred             h
Q 026314           75 F   75 (240)
Q Consensus        75 ~   75 (240)
                      +
T Consensus       409 ~  409 (471)
T PRK12810        409 F  409 (471)
T ss_pred             c
Confidence            3

>PLN02546 glutathione reductase

Probab=86.99  E-value=2.2  Score=40.37  Aligned_cols=52  Identities=13%  Similarity=0.093  Sum_probs=38.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|+++++++.|+.++..+ +.+.|+++++                ++ .+|.||+|.|.-.+.
T Consensus       299 l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g----------------~~~~~D~Viva~G~~Pnt  352 (558)
T PLN02546        299 VAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKG----------------TVEGFSHVMFATGRKPNT  352 (558)
T ss_pred             HHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCe----------------EEEecCEEEEeeccccCC
Confidence            3456678899999999999997643 4455666555                44 489999999976554

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=86.71  E-value=3.1  Score=34.52  Aligned_cols=64  Identities=22%  Similarity=0.173  Sum_probs=38.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|+..|.+.|++|++.+.|.++...+ +++. |.++-.....   ..++=+ ..+|+|+.||-|+|.-+.
T Consensus       101 ~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~---~glHvD-Pl~i~ak~ViDaTGHda~  166 (230)
T PF01946_consen  101 TLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEM---AGLHVD-PLTIRAKVVIDATGHDAE  166 (230)
T ss_dssp             HHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHT---T--T-B--EEEEESEEEE---SSSS
T ss_pred             HHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhH---hhcCCC-cceEEEeEEEeCCCCchH
Confidence            46778888999999999999987776 6664 3321100000   011222 357999999999998763

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=86.60  E-value=1.6  Score=42.98  Aligned_cols=40  Identities=13%  Similarity=0.102  Sum_probs=32.6

Q ss_pred             EEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           13 TFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        13 ~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|+++++|+.|...+++|.|.+ +|.               +++||+||+|.=+..
T Consensus       448 ~I~ln~~V~~I~~~~dgV~V~~-~G~---------------~~~AD~VIvTvPl~v  487 (808)
T PLN02328        448 PIFYERTVESIRYGVDGVIVYA-GGQ---------------EFHGDMVLCTVPLGV  487 (808)
T ss_pred             CcccCCeeEEEEEcCCeEEEEe-CCe---------------EEEcCEEEECCCHHH
Confidence            4999999999999888888754 442               799999999986544

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=86.53  E-value=1.4  Score=38.76  Aligned_cols=54  Identities=17%  Similarity=0.230  Sum_probs=45.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|.+.-++.|..+..+-+|.+....+++++ |.|..+.             ...++||..|+|+|.+-
T Consensus       263 ~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~-------------diP~~a~~~VLAsGsff  317 (421)
T COG3075         263 QLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHA-------------DIPLRADFYVLASGSFF  317 (421)
T ss_pred             HHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccc-------------cCCCChhHeeeeccccc
Confidence            467788899999999999999999999997 8887552             34699999999999754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=86.24  E-value=2.1  Score=39.09  Aligned_cols=54  Identities=11%  Similarity=0.139  Sum_probs=39.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++++++++|++++.  .  .|++++|.               ++++|.|+.|+|.-.+ .+++.+
T Consensus       195 l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~---------------~~~~D~vl~a~G~~pn~~~l~~~  249 (438)
T PRK13512        195 ILDELDKREIPYRLNEEIDAING--N--EVTFKSGK---------------VEHYDMIIEGVGTHPNSKFIESS  249 (438)
T ss_pred             HHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCC---------------EEEeCEEEECcCCCcChHHHHhc
Confidence            45567788999999999999863  2  35555552               6999999999997653 344444

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=84.35  E-value=39  Score=33.32  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.++|++.|++|+++++|+++..           -                .++||.||.|.|.++.
T Consensus       102 ~L~e~a~~~GV~i~~g~~v~~i~~-----------~----------------~~~~D~VVgADG~~S~  142 (765)
T PRK08255        102 ILQARCEELGVKLVFETEVPDDQA-----------L----------------AADADLVIASDGLNSR  142 (765)
T ss_pred             HHHHHHHHcCCEEEeCCccCchhh-----------h----------------hcCCCEEEEcCCCCHH
Confidence            477888899999999998876521           1                3579999999999874

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=82.85  E-value=3.8  Score=38.26  Aligned_cols=49  Identities=16%  Similarity=0.100  Sum_probs=36.3

Q ss_pred             CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           10 HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|++++.++.|++++..++++. |+..+..          .+++.++.+|.|++|.|.-.
T Consensus       400 ~gI~i~~~~~v~~i~~~~g~v~~v~~~~~~----------~g~~~~i~~D~v~~~~G~~p  449 (517)
T PRK15317        400 PNVTIITNAQTTEVTGDGDKVTGLTYKDRT----------TGEEHHLELEGVFVQIGLVP  449 (517)
T ss_pred             CCcEEEECcEEEEEEcCCCcEEEEEEEECC----------CCcEEEEEcCEEEEeECCcc
Confidence            5999999999999987656554 5544321          12344799999999999865

>PLN02976 amine oxidase

Probab=82.48  E-value=2.7  Score=44.03  Aligned_cols=42  Identities=17%  Similarity=0.139  Sum_probs=34.1

Q ss_pred             CcEEEcCceEEEEEEe----------CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314           11 GTTFSNNTSVIGGHLE----------GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~----------~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +..|+++++|+.|...          +++|.|+|.+|.               ++.||+||+|.=+.
T Consensus       945 ~L~IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGe---------------tftADaVIVTVPLG  996 (1713)
T PLN02976        945 GLDIHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGS---------------EFLGDAVLITVPLG  996 (1713)
T ss_pred             hCCeecCCeEEEEEecCCcccccccCCCcEEEEECCCC---------------EEEeceEEEeCCHH
Confidence            4469999999999884          357889888873               69999999998654

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=81.82  E-value=5.9  Score=36.19  Aligned_cols=51  Identities=14%  Similarity=0.075  Sum_probs=36.1

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+..+++ ++++++++|++++..++ ++.++..+++             +.++++|.||+|.|.-.
T Consensus       217 ~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~-------------~~~i~~D~vi~a~G~~p  268 (460)
T PRK06292        217 QKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGK-------------TETIEADYVLVATGRRP  268 (460)
T ss_pred             HHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCc-------------eEEEEeCEEEEccCCcc
Confidence            3445667 99999999999987654 4555433331             22699999999999743

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=81.77  E-value=5.5  Score=36.52  Aligned_cols=66  Identities=14%  Similarity=0.017  Sum_probs=40.6

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecC---Cc---ccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISE---SK---NLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~---g~---~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      .+.+++.|++|++++.++.|... +++++ |+..+   +.   .++..+. -..+++.++++|.||.|.|.-.+.
T Consensus       316 ~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~D~Vi~AiG~~p~~  389 (449)
T TIGR01316       316 IAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFL-PCGDAECKLEADAVIVAIGNGSNP  389 (449)
T ss_pred             HHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeee-ecCCceEEEECCEEEECCCCCCCc
Confidence            45678899999999999999764 34453 44321   00   0000000 012345679999999999986543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=81.27  E-value=3.8  Score=37.19  Aligned_cols=56  Identities=7%  Similarity=0.016  Sum_probs=35.5

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ..+++.|+++. ..+|++|...++.+.+.+.+..       .+..+...++++|++|+|+|.-.
T Consensus        70 ~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~-------~~~~~~g~~i~yD~LViAtGs~~  125 (424)
T PTZ00318         70 PALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKS-------NNANVNTFSVPYDKLVVAHGARP  125 (424)
T ss_pred             HHhccCCeEEE-EEEEEEEEcCCCEEEEeccccc-------ccccCCceEecCCEEEECCCccc
Confidence            33555788877 5799999888777766332110       00001112699999999999854

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=81.24  E-value=4.1  Score=37.35  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=39.5

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCe---EEEEe-------cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNC---MNVYI-------SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~---~~V~t-------~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+.+++.|++|++++.++.|...+++   +.+..       .+|.   ..  ....+++.++.||.||.|.|.-.+
T Consensus       318 ~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~---~~--~~~~g~~~~i~~D~vi~a~G~~p~  388 (457)
T PRK11749        318 VEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGR---RR--VPIEGSEFTLPADLVIKAIGQTPN  388 (457)
T ss_pred             HHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCC---cc--cCCCCceEEEECCEEEECccCCCC
Confidence            45678899999999999999866544   33221       0110   00  000134557999999999997655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3dme_A	369	Crystal Structure Of Conserved Exported Protein Fro		7e-52

>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From Bordetella Pertussis. Northeast Structural Genomics Target Ber141 Length = 369

Iteration: 1
 Score =  200 bits (508), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/235 (45%), Positives = 142/235 (60%), Gaps = 24/235 (10%)
Query: 4   QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 63
           QG+AE+ G     +T +I G +          E     ++ G  P+    TL  ++++N+
Sbjct: 157 QGDAESDGAQLVFHTPLIAGRVR--------PEGGFELDFGGAEPM----TLSCRVLINA 204
Query: 64  AGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTL 123
           AGL AP LA+R  G+    IPP Y  +G YF+LA    APF  LIYP+P+  GLGVH+TL
Sbjct: 205 AGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR--APFSRLIYPVPQHAGLGVHLTL 262
Query: 124 DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSY 183
           DL GQ KFGPD EWI             DY+++  RA+ FY  +R Y+P L DG+L P Y
Sbjct: 263 DLGGQAKFGPDTEWI----------ATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGY 312
Query: 184 AGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF 238
            GIRPK+SGP +   DF I G  +HGV GLVNL+GIESPGLT+S+AIAE   A+ 
Sbjct: 313 TGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARL 367

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3dme_A	369	Conserved exported protein; structural genomics, P	1e-92
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	2e-04

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score =  275 bits (707), Expect = 1e-92
 Identities = 105/234 (44%), Positives = 137/234 (58%), Gaps = 24/234 (10%)

Query: 4   QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS 63
           QG+AE+ G     +T +I G +                           +TL  ++++N+
Sbjct: 157 QGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAE------------PMTLSCRVLINA 204

Query: 64  AGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTL 123
           AGL AP LA+R  G+    IPP Y  +G YF+LA    APF  LIYP+P+  GLGVH+TL
Sbjct: 205 AGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLA--GRAPFSRLIYPVPQHAGLGVHLTL 262

Query: 124 DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSY 183
           DL GQ KFGPD EWI   D          Y+++  RA+ FY  +R Y+P L DG+L P Y
Sbjct: 263 DLGGQAKFGPDTEWIATED----------YTLDPRRADVFYAAVRSYWPALPDGALAPGY 312

Query: 184 AGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK 237
            GIRPK+SGP +   DF I G  +HGV GLVNL+GIESPGLT+S+AIAE   A+
Sbjct: 313 TGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLAR 366

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 30/178 (16%), Positives = 54/178 (30%), Gaps = 26/178 (14%)

Query: 60  VVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGV 119
           +VN+AG    A+A    G+  + + P    R   F  A           +P+        
Sbjct: 201 LVNAAGAWCDAIAGL-AGVRPLGLQPK---RRSAFIFA--PPPGIDCHDWPMLVSLDESF 254

Query: 120 HVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDGSL 179
           ++  D    +    + + ++  D         D +      E            L     
Sbjct: 255 YLKPDAGMLLGSPANADPVEAHDVQPEQ---LDIATGMYLIEEA--------TTLTIRRP 303

Query: 180 QPSYAGIRPKLSGPRQSP-IDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA 236
           + ++AG+R            D V  G       G   +      G+ +S A+ E  AA
Sbjct: 304 EHTWAGLRSF------VADGDLVA-GYAA-NAEGFFWVAAQGGYGIQTSAAMGEASAA 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3dme_A	369	Conserved exported protein; structural genomics, P	99.98
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.96
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.95
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.94
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.93
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.93
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.93
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.92
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.92
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.92
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.91
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.91
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.91
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.9
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.9
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.9
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	99.89
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.89
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.88
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.0
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.76
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.69
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.5
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.32
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.29
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.27
3atr_A	453	Conserved archaeal protein; saturating double bond	98.24
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.08
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.02
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.01
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.0
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.98
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.9
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.9
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.89
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.79
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.79
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.75
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.69
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.63
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.61
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.56
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.53
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.48
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.48
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.44
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.4
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.4
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.3
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.23
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.22
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.14
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.14
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.13
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.12
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.04
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.98
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.94
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.92
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	96.9
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	96.87
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.85
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.81
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	96.79
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.78
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.77
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	96.75
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	96.75
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.74
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	96.74
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	96.7
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.68
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.58
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.56
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.55
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.55
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.54
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	96.54
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	96.53
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.53
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.52
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	96.52
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.5
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	96.49
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	96.46
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	96.39
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	96.39
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	96.39
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.38
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.35
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	96.34
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.32
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.25
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	96.24
4dna_A	463	Probable glutathione reductase; structural genomic	96.22
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	96.21
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	96.2
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.18
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	96.17
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.17
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	96.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	96.1
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	96.08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	96.07
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.04
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.02
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.99
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	95.96
2bry_A	497	NEDD9 interacting protein with calponin homology a	95.91
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.88
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.88
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	95.87
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.87
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	95.87
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.85
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	95.85
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.77
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.76
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.73
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	95.72
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	95.68
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.68
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.62
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.6
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.59
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	95.57
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.49
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.42
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.41
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.41
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	95.4
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.39
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	95.36
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.22
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.13
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.11
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.1
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	95.08
1ojt_A	482	Surface protein; redox-active center, glycolysis,	94.98
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.98
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.94
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	94.94
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	94.92
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	94.85
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.85
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	94.75
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	94.67
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.62
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.59
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	94.55
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	94.48
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	94.46
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.44
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	94.22
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	94.2
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.19
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.18
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	94.17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	94.15
3r9u_A	315	Thioredoxin reductase; structural genomics, center	94.09
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	94.04
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	94.01
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	93.8
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	93.74
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	93.69
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	93.69
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	93.65
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	93.65
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	93.53
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.3
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	93.25
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	93.21
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	93.12
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	93.05
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	92.99
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	92.9
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	92.79
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	92.26
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	92.13
4hb9_A	412	Similarities with probable monooxygenase; flavin,	92.1
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	92.09
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.02
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	91.92
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	91.76
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.67
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	91.54
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	91.51
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	91.46
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	91.33
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	91.08
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.02
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	90.9
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.9
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	90.77
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	90.65
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	90.52
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.28
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	90.24
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	90.19
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	90.18
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.12
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	90.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	89.51
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	89.16
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	88.91
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	88.9
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	88.69
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	88.63
3r9u_A	315	Thioredoxin reductase; structural genomics, center	88.62
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	88.6
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	88.57
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	88.45
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	88.09
4fk1_A	304	Putative thioredoxin reductase; structural genomic	88.07
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	88.06
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	87.92
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	87.92
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	87.73
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	87.53
1ojt_A	482	Surface protein; redox-active center, glycolysis,	87.51
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	87.45
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	87.36
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	87.16
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	87.09
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	86.5
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	86.27
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	85.86
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	85.78
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	85.65
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	85.31
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	84.92
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	84.7
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	83.73
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	83.57
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	83.54
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	83.06
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	82.83
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	81.98
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	81.27
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	80.1

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.98  E-value=2.8e-31  Score=231.78  Aligned_cols=211  Identities=49%  Similarity=0.903  Sum_probs=172.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|.+.++++|++|+++++|++|+..+++ +.|++++|+             +.+++||.||+|+|.|+..|++++.+.+.
T Consensus       155 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~-------------~~~~~a~~VV~A~G~~s~~l~~~~~g~~~  221 (369)
T 3dme_A          155 AYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAE-------------PMTLSCRVLINAAGLHAPGLARRIEGIPR  221 (369)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTS-------------CEEEEEEEEEECCGGGHHHHHHTEETSCG
T ss_pred             HHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCc-------------eeEEEeCEEEECCCcchHHHHHHhcCCCc
Confidence            5788899999999999999999988765 888887662             23799999999999999999998822332


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ...|++++.||+++.++.+  .++++.+|+.|...+.++++++..+|++++|++.++.+          .++..++.+.+
T Consensus       222 ~~~~~i~p~rG~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~g~~~iG~t~e~~~----------~~~~~~~~~~~  289 (369)
T 3dme_A          222 DSIPPEYLCKGSYFTLAGR--APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIA----------TEDYTLDPRRA  289 (369)
T ss_dssp             GGSCCCEEEEEEEEECSSS--CSCSSEEEECTTCSSCCCCEEECTTSCEEECCCCEEES----------SCCCCCCGGGG
T ss_pred             cccceeeecceEEEEECCC--CccCceeecCCCCCCceEEEeCccCCcEEECCCccccc----------ccccccCHHHH
Confidence            2223455599999999764  34567788888765556788888899999999876522          34566778889


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEE-ec-CCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHH
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVI-QG-DDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKF  238 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii-~~-~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i  238 (240)
                      +.+++.++++||.|...++.+.|+|+||.+.++.+++++|+| |. ++  ..+|+|+++|++|+|||+||++|++++++|
T Consensus       290 ~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~--~~~~l~~~~G~~~~G~t~ap~~a~~~a~~i  367 (369)
T 3dme_A          290 DVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAADFAIAGPASH--GVAGLVNLYGIESPGLTASLAIAEETLARL  367 (369)
T ss_dssp             GGHHHHHHTTCTTCCTTCCEEEEEEEEEESSCTTSCCCCCEEECHHHH--CCTTEEEEECCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCChhhceecceeccccccCCCCCcCCeEEeccccc--CCCCEEEEeCCCCchHhccHHHHHHHHHHh
Confidence            999999999999999999999999999997543457789988 76 34  578999999999999999999999999998


Q ss_pred             h
Q 026314          239 L  239 (240)
Q Consensus       239 ~  239 (240)
                      .
T Consensus       368 ~  368 (369)
T 3dme_A          368 A  368 (369)
T ss_dssp             C
T ss_pred             h
Confidence            5

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.96  E-value=7.9e-29  Score=217.51  Aligned_cols=197  Identities=16%  Similarity=0.073  Sum_probs=156.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC-C
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-N   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~-~   80 (240)
                      +|++.|+++|++|+++++|++|+.++++|.|+|++|                +++||.||+|+|.|+..|++++ +.+ +
T Consensus       159 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g----------------~i~a~~VV~A~G~~s~~l~~~~-g~~~~  221 (381)
T 3nyc_A          159 GYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG----------------SYRAAVLVNAAGAWCDAIAGLA-GVRPL  221 (381)
T ss_dssp             HHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE----------------EEEESEEEECCGGGHHHHHHHH-TCCCC
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC----------------EEEcCEEEECCChhHHHHHHHh-CCCCC
Confidence            578899999999999999999999998999999887                8999999999999999999998 443 4


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++.|    .||++++++.+.......  +|.......+.|++|.. |++++|++.+....         ..+..++++.+
T Consensus       222 ~~~p----~rg~~~~~~~~~~~~~~~--~p~~~~~~~~~y~~p~~-g~~~ig~~~~~~~~---------~~~~~~~~~~~  285 (381)
T 3nyc_A          222 GLQP----KRRSAFIFAPPPGIDCHD--WPMLVSLDESFYLKPDA-GMLLGSPANADPVE---------AHDVQPEQLDI  285 (381)
T ss_dssp             CCEE----EEEEEEEECCCTTCCCTT--CCEEEETTSSCEEEEET-TEEEEECCCCEECC---------SSCCCCCHHHH
T ss_pred             ceee----eEEEEEEECCCcCCCcCc--cceEEeCCCCEEEEeCC-CcEEEeCCcCCCCC---------cccCCCChHHH
Confidence            5556    999999987542111111  11110112346888886 89999987643211         23444555667


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +.+++.+.+ +|.+...++.+.|+|+||+     ++|+.|+||..+  +.+|+|+++|++|+|+++||++|+++|++|.
T Consensus       286 ~~~~~~~~~-~~~l~~~~~~~~w~G~r~~-----t~D~~p~ig~~~--~~~~l~~a~G~~g~G~~~ap~~g~~la~~i~  356 (381)
T 3nyc_A          286 ATGMYLIEE-ATTLTIRRPEHTWAGLRSF-----VADGDLVAGYAA--NAEGFFWVAAQGGYGIQTSAAMGEASAALIR  356 (381)
T ss_dssp             HHHHHHHHH-HBSCCCCCCSEEEEEEEEE-----CTTSCCEEEECT--TSTTEEEEECCTTCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHh-cCCCcccceeeeeEEcccc-----CCCCCceecCCC--CCCCeEEEEcCCChhHhhCHHHHHHHHHHHh
Confidence            788888766 5788888899999999999     688899999987  6899999999999999999999999999985

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.95  E-value=8.4e-27  Score=205.33  Aligned_cols=195  Identities=17%  Similarity=0.117  Sum_probs=157.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC-
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~-   79 (240)
                      +|.+.++++|++|+++++|++|+..+++|. |+|++|                +++||.||+|+|.|+..|.+++ +.. 
T Consensus       154 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g----------------~i~a~~VV~A~G~~s~~l~~~~-g~~~  216 (382)
T 1y56_B          154 AFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG----------------IIKTGIVVNATNAWANLINAMA-GIKT  216 (382)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE----------------EEECSEEEECCGGGHHHHHHHH-TCCS
T ss_pred             HHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc----------------EEECCEEEECcchhHHHHHHHc-CCCc
Confidence            477889999999999999999998888887 988877                7999999999999999999888 445 


Q ss_pred             -CccCCCceeeceeEEEEcCCCCCCcc-ceeecCCCCCCCeeEEEeecCCcEEEcC-CccccCCcccccccccccccccc
Q 026314           80 -NVFIPPAYYARGCYFSLANTKVAPFK-HLIYPIPEDGGLGVHVTLDLDGQIKFGP-DVEWIDGIDDTLSFLNRFDYSVN  156 (240)
Q Consensus        80 -~~~~p~~~~~~g~~~~~~~~~~~~~~-~~i~~~p~~~~~~~~~~~~~~g~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~  156 (240)
                       +++.|    .+|+++.+++.. .... +.++..   ...+.|++|..+| +++|. +.....          .++...+
T Consensus       217 ~~~~~~----~~g~~~~~~~~~-~~~~~~~~~~~---~~~~~y~~p~~~g-~~iG~~~~~~~~----------~~~~~~~  277 (382)
T 1y56_B          217 KIPIEP----YKHQAVITQPIK-RGTINPMVISF---KYGHAYLTQTFHG-GIIGGIGYEIGP----------TYDLTPT  277 (382)
T ss_dssp             CCCCEE----EEEEEEEECCCS-TTSSCSEEEES---TTTTEEEECCSSS-CCEEECSCCBSS----------CCCCCCC
T ss_pred             CcCCCe----eEeEEEEEccCC-cccCCCeEEec---CCCeEEEEEeCCe-EEEecCCCCCCC----------CCCCCCC
Confidence             56666    999999887542 2222 333321   1135788998777 88983 322211          3345566


Q ss_pred             hhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHH
Q 026314          157 ANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAA  236 (240)
Q Consensus       157 ~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~  236 (240)
                      .+..+.+++.+.++||.|...++.+.|+|+||.     ++|+.|+||..+  +.+|+|+++|++|+|+++||++|+++++
T Consensus       278 ~~~~~~l~~~~~~~~p~l~~~~~~~~~~g~r~~-----t~d~~p~ig~~~--~~~~~~~~~G~~g~G~~~a~~~g~~la~  350 (382)
T 1y56_B          278 YEFLREVSYYFTKIIPALKNLLILRTWAGYYAK-----TPDSNPAIGRIE--ELNDYYIAAGFSGHGFMMAPAVGEMVAE  350 (382)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEE-----CTTSCCEEEEES--SSBTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcCCCCceEEEEecccc-----CCCCCcEeccCC--CCCCEEEEEecCcchHhhhHHHHHHHHH
Confidence            778999999999999999988899999999998     578889999987  6789999999999999999999999999


Q ss_pred             HHh
Q 026314          237 KFL  239 (240)
Q Consensus       237 ~i~  239 (240)
                      +|.
T Consensus       351 ~i~  353 (382)
T 1y56_B          351 LIT  353 (382)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            975

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.94  E-value=1.8e-26  Score=203.39  Aligned_cols=201  Identities=13%  Similarity=0.105  Sum_probs=155.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.++++|++|+++++|++|+..+++|.|+|+++                +++||.||+|+|.|+..|++++ +.+++
T Consensus       155 ~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g----------------~~~a~~vV~A~G~~~~~l~~~~-g~~~p  217 (389)
T 2gf3_A          155 AYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG----------------SYTADKLIVSMGAWNSKLLSKL-NLDIP  217 (389)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE----------------EEEEEEEEECCGGGHHHHGGGG-TEECC
T ss_pred             HHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC----------------EEEeCEEEEecCccHHHHhhhh-ccCCc
Confidence            577889999999999999999998888888888776                7999999999999999998877 43455


Q ss_pred             cCCCceeeceeEEEEcCCCCCCc---cceeecCCCCCCCeeEEEeecCC-cEEEcCCccccC-Cccccccccccccccc-
Q 026314           82 FIPPAYYARGCYFSLANTKVAPF---KHLIYPIPEDGGLGVHVTLDLDG-QIKFGPDVEWID-GIDDTLSFLNRFDYSV-  155 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~~---~~~i~~~p~~~~~~~~~~~~~~g-~~~~G~~~~~~~-~~~~~~~~~~~~~~~~-  155 (240)
                      +.|    .+|+++.+++......   ...++..... ....|++|..+| ++++|.+..... .+       +..+..+ 
T Consensus       218 l~~----~rg~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~y~~p~~~g~~~~iG~~~~~~~~~~-------~~~~~~~~  285 (389)
T 2gf3_A          218 LQP----YRQVVGFFESDESKYSNDIDFPGFMVEVP-NGIYYGFPSFGGCGLKLGYHTFGQKIDP-------DTINREFG  285 (389)
T ss_dssp             CEE----EEEEEEEECCCHHHHBGGGTCCEEEEEET-TEEEEEECBSTTCCEEEEESSCCEECCT-------TTCCCCTT
T ss_pred             eEE----EEEEEEEEecCcccccccccCCEEEEeCC-CCcEEEcCCCCCCcEEEEEcCCCCccCc-------ccccCccC
Confidence            566    9999999875420000   0011100011 124678888787 899986532110 10       0234445 


Q ss_pred             -chhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHH
Q 026314          156 -NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYV  234 (240)
Q Consensus       156 -~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~v  234 (240)
                       +++..+.+.+.++++||.+.. .+.+.|+|+||.     ++|+.|+||..+  +.+|+|+++|++|+|+++||++|+++
T Consensus       286 ~~~~~~~~l~~~~~~~~P~l~~-~~~~~w~g~r~~-----t~D~~p~ig~~~--~~~~l~~a~G~~g~G~~~ap~~g~~l  357 (389)
T 2gf3_A          286 VYPEDESNLRAFLEEYMPGANG-ELKRGAVCMYTK-----TLDEHFIIDLHP--EHSNVVIAAGFSGHGFKFSSGVGEVL  357 (389)
T ss_dssp             SSHHHHHHHHHHHHHHCGGGCS-CEEEEEEEEEEE-----CTTSCCEEEEET--TEEEEEEEECCTTCCGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCC-CceEEEEEEecc-----CCCCCeEEccCC--CCCCEEEEECCccccccccHHHHHHH
Confidence             677889999999999999987 788899999998     678899999987  67899999999999999999999999


Q ss_pred             HHHHh
Q 026314          235 AAKFL  239 (240)
Q Consensus       235 a~~i~  239 (240)
                      +++|.
T Consensus       358 a~~i~  362 (389)
T 2gf3_A          358 SQLAL  362 (389)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99985

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.93  E-value=1.5e-25  Score=201.86  Aligned_cols=199  Identities=18%  Similarity=0.204  Sum_probs=155.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEE---------------eCCeE-EEEecCCcccccCCCCCCCCCceeE--ecCEEEEc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHL---------------EGNCM-NVYISESKNLRNWDGVSPLQPELTL--IPKLVVNS   63 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~---------------~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i--~a~~VV~a   63 (240)
                      +|.+.++++|++|+++++|++|+.               .++++ .|+|++|                ++  +||.||+|
T Consensus       186 ~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g----------------~i~~~Ad~VV~A  249 (448)
T 3axb_A          186 YYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG----------------TRVEVGEKLVVA  249 (448)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS----------------CEEEEEEEEEEC
T ss_pred             HHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC----------------EEeecCCEEEEC
Confidence            578889999999999999999987               55564 5888877                78  99999999


Q ss_pred             CCCChHHHHHHhcCCCCccCCCceeeceeEEEEcCCCCCCcccee----------ecCCCCCCCeeEEEeecC-CcEEEc
Q 026314           64 AGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLI----------YPIPEDGGLGVHVTLDLD-GQIKFG  132 (240)
Q Consensus        64 aG~wa~~l~~~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i----------~~~p~~~~~~~~~~~~~~-g~~~~G  132 (240)
                      +|+|+..|++++ +.++++.|    .||+++.+++.... +...+          +|+... ..++|++|..+ |++++|
T Consensus       250 tG~~s~~l~~~~-g~~~~~~p----~rg~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~-~~~~y~~p~~~~g~~~iG  322 (448)
T 3axb_A          250 AGVWSNRLLNPL-GIDTFSRP----KKRMVFRVSASTEG-LRRIMREGDLAGAGAPPLIIL-PKRVLVRPAPREGSFWVQ  322 (448)
T ss_dssp             CGGGHHHHHGGG-TCCCSEEE----EEEEEEEEECCSHH-HHHHHHHCCTTSSSSCCEEEE-TTTEEEEEETTTTEEEEE
T ss_pred             CCcCHHHHHHHc-CCCCcccc----cceEEEEeCCcccc-cccccccccccccCCCceEEc-CCceEEeecCCCCeEEEe
Confidence            999999999988 45666666    99999999764210 11100          011001 13578899887 889999


Q ss_pred             CCccccCCccccccccccccc--ccchhh-HHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCC
Q 026314          133 PDVEWIDGIDDTLSFLNRFDY--SVNANR-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG  209 (240)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~  209 (240)
                      ++.+... +.       .++.  .++.+. .+.+++.++++||.|...++.+.|+|+||+.    ++|+.|+||..+   
T Consensus       323 ~~~~~~~-~~-------~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~----t~d~~p~ig~~~---  387 (448)
T 3axb_A          323 LSDNLGR-PF-------ALEEDPQPEEHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDIS----FDANPVVFEPWE---  387 (448)
T ss_dssp             ECCCTTS-CB-------CCCSSCCCCHHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEE----TTSSCEEECGGG---
T ss_pred             cCCcccC-Cc-------ccccccCCChHHHHHHHHHHHHHhCcCcccCCcccceEEEeccc----cCCCCcEeeecC---
Confidence            8764311 00       2333  456677 8999999999999999899999999999982    367889999875   


Q ss_pred             CCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          210 VPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       210 ~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                       +|+|+++|++|+|+++||++|+++|++|.
T Consensus       388 -~~l~~a~G~~g~G~~~ap~~g~~la~~i~  416 (448)
T 3axb_A          388 -SGIVVAAGTSGSGIMKSDSIGRVAAAVAL  416 (448)
T ss_dssp             -CSEEEEECCTTCCGGGHHHHHHHHHHHHT
T ss_pred             -CCEEEEECCCchhHhHhHHHHHHHHHHHc
Confidence             79999999999999999999999999985

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.93  E-value=6.6e-25  Score=194.42  Aligned_cols=200  Identities=12%  Similarity=-0.004  Sum_probs=151.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.|+++|++|+++++|++|+..+++|.|+|+++                +++||.||+|+|.|+..|++++ +..++
T Consensus       158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g----------------~i~a~~VV~A~G~~s~~l~~~~-g~~~p  220 (397)
T 2oln_A          158 ALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG----------------TYRAGKVVLACGPYTNDLLEPL-GARLA  220 (397)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC----------------EEEEEEEEECCGGGHHHHHGGG-TCCCC
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC----------------EEEcCEEEEcCCcChHHHhhhc-CCCCC
Confidence            577888999999999999999999888898988776                7999999999999999999888 44555


Q ss_pred             cCCCceeeceeEEEEcCCCCC-CccceeecCCCCC--CCeeEEEeecCC----cEEEcCCcc--ccCCcccccccccccc
Q 026314           82 FIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDG--GLGVHVTLDLDG----QIKFGPDVE--WIDGIDDTLSFLNRFD  152 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~p~~~--~~~~~~~~~~~g----~~~~G~~~~--~~~~~~~~~~~~~~~~  152 (240)
                      +.|    .+++++.+++.... .....+.......  ....|++|..++    ++++|.+..  ....+.       ..+
T Consensus       221 ~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~-------~~~  289 (397)
T 2oln_A          221 YSV----YEMAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPS-------AAT  289 (397)
T ss_dssp             EEE----EEEEEEEEEBCSCCSCCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGG-------GCC
T ss_pred             eeE----EEEEEEEEeecCcccCCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCc-------ccc
Confidence            555    99999998754211 1111111111100  114677887655    799996542  110110       234


Q ss_pred             cccchhhHHHHHHHHhhhCCCCCCCCccccccccCC--eecCCCCCCCCeEEecCCCCC----CCCEEEEeCCCCchHhh
Q 026314          153 YSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRP--KLSGPRQSPIDFVIQGDDTHG----VPGLVNLFGIESPGLTS  226 (240)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~--~~~~~~~~~~~~ii~~~~~~~----~~~~~~~~G~~~~G~t~  226 (240)
                      ..++++..+.+.+.+.++||.|.. .+.+.|+|+++  .     ++|+.|+||..+  +    .+|+|+++|  |+|+++
T Consensus       290 ~~~~~~~~~~l~~~~~~~~p~l~~-~~~~~~~g~~~~p~-----t~D~~p~ig~~~--~~~~~~~~l~~a~G--g~G~~~  359 (397)
T 2oln_A          290 GVADRRQMDRLSGWLRDHLPTVDP-DPVRTSTCLAVLPT-----DPERQFFLGTAR--DLMTHGEKLVVYGA--GWAFKF  359 (397)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTBCS-SCSEEEEEEEEEES-----STTCCCEEEEST--TTSTTGGGEEEEEE--SSCGGG
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCC-CceeEEEEEecCCc-----CCCCCeEeecCC--ccccCCCCEEEEeC--cchhhc
Confidence            456677889999999999999987 67788999987  6     688999999987  5    689999999  799999


Q ss_pred             hHHHHHHHHHHHh
Q 026314          227 SMAIAEYVAAKFL  239 (240)
Q Consensus       227 ap~~g~~va~~i~  239 (240)
                      ||++|+++|++|.
T Consensus       360 ap~~g~~la~~i~  372 (397)
T 2oln_A          360 VPLFGRICADLAV  372 (397)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999999985

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.93  E-value=2.3e-25  Score=196.00  Aligned_cols=192  Identities=16%  Similarity=0.237  Sum_probs=158.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.++++|++|+++++|++|+..+++|.|++++|                +++||.||+|+|.|+..|++.+ +..++
T Consensus       169 ~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g----------------~~~a~~vV~A~G~~s~~l~~~~-~~~~~  231 (382)
T 1ryi_A          169 AYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG----------------DVWANHVVVASGVWSGMFFKQL-GLNNA  231 (382)
T ss_dssp             HHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE----------------EEEEEEEEECCGGGTHHHHHHT-TCCCC
T ss_pred             HHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc----------------eEEcCEEEECCChhHHHHHHhc-CCCCc
Confidence            577888999999999999999998888888888776                7999999999999999999888 45555


Q ss_pred             cCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhHH
Q 026314           82 FIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAE  161 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (240)
                      +.|    .+|+++.+++.. ..++..++.      ...+++|..+|++++|.+.+..           .++...+.+..+
T Consensus       232 ~~~----~~g~~~~~~~~~-~~~~~~~~~------~~~~~~p~~~g~~~vG~~~~~~-----------~~~~~~~~~~~~  289 (382)
T 1ryi_A          232 FLP----VKGECLSVWNDD-IPLTKTLYH------DHCYIVPRKSGRLVVGATMKPG-----------DWSETPDLGGLE  289 (382)
T ss_dssp             CEE----EEEEEEEEECCS-SCCCSEEEE------TTEEEEECTTSEEEEECCCEET-----------CCCCSCCHHHHH
T ss_pred             eec----cceEEEEECCCC-CCccceEEc------CCEEEEEcCCCeEEEeeccccc-----------CCCCCCCHHHHH
Confidence            556    999999887642 223333332      2468888878899999875432           234445677889


Q ss_pred             HHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          162 RFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       162 ~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      .+++.+.++||.+...++.+.|+|+||.     ++++.++||..+  +.+|+|+++|++|+|+++||.+|+++|++|.
T Consensus       290 ~l~~~~~~~~p~l~~~~~~~~w~g~~~~-----t~d~~p~ig~~~--~~~~l~~~~G~~g~G~~~a~~~g~~la~~i~  360 (382)
T 1ryi_A          290 SVMKKAKTMLPAIQNMKVDRFWAGLRPG-----TKDGKPYIGRHP--EDSRILFAAGHFRNGILLAPATGALISDLIM  360 (382)
T ss_dssp             HHHHHHHHHCGGGGGSEEEEEEEEEEEE-----CSSSCCEEEEET--TEEEEEEEECCSSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCcCCCceeeEEEEeccc-----CCCCCcEeccCC--CcCCEEEEEcCCcchHHHhHHHHHHHHHHHh
Confidence            9999999999999888888999999998     577889999876  5789999999999999999999999999985

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.92  E-value=2.8e-25  Score=194.74  Aligned_cols=196  Identities=15%  Similarity=0.138  Sum_probs=147.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.++++|++|+++++|++|+.++++|.|+|++|                +++||.||+|+|.|+..|++     .++
T Consensus       154 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g----------------~~~a~~vV~a~G~~s~~l~~-----~l~  212 (372)
T 2uzz_A          154 TWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG----------------EYQAKKAIVCAGTWVKDLLP-----ELP  212 (372)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC----------------EEEEEEEEECCGGGGGGTST-----TCC
T ss_pred             HHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC----------------eEEcCEEEEcCCccHHhhcc-----ccC
Confidence            577888999999999999999998888888999887                79999999999999987654     334


Q ss_pred             cCCCceeeceeEEEEcCCCCCC----ccceeecCCCCCCCeeEEEeecCCcEEEcCCcc--ccCCccccccccccccccc
Q 026314           82 FIPPAYYARGCYFSLANTKVAP----FKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVE--WIDGIDDTLSFLNRFDYSV  155 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~----~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~--~~~~~~~~~~~~~~~~~~~  155 (240)
                      +.|    .||+++.++.+....    ....+...+  .....|++|..+|++++|.+..  ..+.+.      +..+...
T Consensus       213 ~~p----~rg~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~------~~~~~~~  280 (372)
T 2uzz_A          213 VQP----VRKVFAWYQADGRYSVKNKFPAFTGELP--NGDQYYGFPAENDALKIGKHNGGQVIHSAD------ERVPFAE  280 (372)
T ss_dssp             CEE----EECCEEEECCCGGGSTTTTCCEEEEECT--TCCEEEEECCSSSCEEEEESSCCEECCSGG------GCCCTTT
T ss_pred             ceE----EEEEEEEEEeccccCccccCCEEEEecC--CCCeEEecCCCCCeEEEEecCCCCccCChh------hccCCCC
Confidence            456    999998886531100    111111111  1234567787788999997541  111100      0122333


Q ss_pred             chhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHH
Q 026314          156 NANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA  235 (240)
Q Consensus       156 ~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va  235 (240)
                      +.+..+.+.+.+.++||.+.  ++.+.|+|+||.     ++|+.|+||..+  +.+|+|+++|++|+|+++||++|++++
T Consensus       281 ~~~~~~~l~~~~~~~~P~l~--~~~~~~~g~r~~-----t~d~~p~ig~~~--~~~~l~~~~G~~g~G~~~ap~~g~~la  351 (372)
T 2uzz_A          281 VVSDGSEAFPFLRNVLPGIG--CCLYGAACTYDN-----SPDEDFIIDTLP--GHDNTLLITGLSGHGFKFASVLGEIAA  351 (372)
T ss_dssp             STTGGGSSHHHHHHHSCSCC--CEEEECCCEEEE-----CTTSCCCEEEET--TEEEEEEECCCCSCCGGGHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCC--ccceeeEEeecc-----CCCCCeEEecCC--CCCCEEEEeCCCccchhccHHHHHHHH
Confidence            45677789999999999997  678889999998     678889999987  678999999999999999999999999


Q ss_pred             HHHh
Q 026314          236 AKFL  239 (240)
Q Consensus       236 ~~i~  239 (240)
                      ++|.
T Consensus       352 ~~i~  355 (372)
T 2uzz_A          352 DFAQ  355 (372)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            9985

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.92  E-value=3.3e-25  Score=198.86  Aligned_cols=205  Identities=18%  Similarity=0.184  Sum_probs=144.7

Q ss_pred             hhhHHHHHCCcEEEcCc---eEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcC
Q 026314            2 WVQGEAENHGTTFSNNT---SVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG   77 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~---~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~   77 (240)
                      +|.+.++++|++|++++   +|++|+.+++++. |+|.+|.               +++||.||+|+|+|+..|++ +  
T Consensus       166 ~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~---------------~i~Ad~VV~AtG~~s~~l~~-l--  227 (438)
T 3dje_A          166 AAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGK---------------IWRAERTFLCAGASAGQFLD-F--  227 (438)
T ss_dssp             HHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTE---------------EEECSEEEECCGGGGGGTSC-C--
T ss_pred             HHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCC---------------EEECCEEEECCCCChhhhcC-c--
Confidence            57888999999999999   9999999888888 9998873               69999999999999998876 4  


Q ss_pred             CCCccCCCceeeceeEEEEcCCCCCCccce-eecCCCCCCCeeEEEeecC-CcEEEcCCccccCC----cc-cccccccc
Q 026314           78 LDNVFIPPAYYARGCYFSLANTKVAPFKHL-IYPIPEDGGLGVHVTLDLD-GQIKFGPDVEWIDG----ID-DTLSFLNR  150 (240)
Q Consensus        78 ~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~-i~~~p~~~~~~~~~~~~~~-g~~~~G~~~~~~~~----~~-~~~~~~~~  150 (240)
                       ..++.|    .+.+...+.... ...... -.|+......++|+.|..+ +.+++|........    +. ...+.  +
T Consensus       228 -~~~~~p----~~~~~~~~~l~~-~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~i~~~~~g~~~~~~~~~~~~~~~--p  299 (438)
T 3dje_A          228 -KNQLRP----TAWTLVHIALKP-EERALYKNIPVIFNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSI--P  299 (438)
T ss_dssp             -TTCCEE----EEEEEEEEECCG-GGHHHHTTCCEEEETTTEEECSCCTTTCEEEEEECCSCEECEEECTTCCEEEC--C
T ss_pred             -ccceee----EEEEEEEEEcCh-HHhhhhcCCCEEEECCCceecCCCCCCCeEEEEeCCCCccCCccCCCcccccC--C
Confidence             223345    554444443221 100000 0111111134556666644 44777521100000    00 00000  1


Q ss_pred             c-ccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHH
Q 026314          151 F-DYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMA  229 (240)
Q Consensus       151 ~-~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~  229 (240)
                      + +...+.+..+.+.+.+.++||.|.+.++.+.|+|+||.     +||+.|+||..+  +.+|+|+++|++|+||+++|+
T Consensus       300 ~~~~~~~~~~~~~l~~~~~~~~P~l~~~~~~~~~~g~~~~-----t~D~~piig~~p--~~~~l~~a~G~~g~G~~~ap~  372 (438)
T 3dje_A          300 FEKTQIPKEAETRVRALLKETMPQLADRPFSFARICWCAD-----TANREFLIDRHP--QYHSLVLGCGASGRGFKYLPS  372 (438)
T ss_dssp             CCCSSCBHHHHHHHHHHHHHHCGGGTTCCCSEEEEEEEEE-----CTTSCCEEEECS--SCTTEEEEECCTTCCGGGTTT
T ss_pred             cccccCCHHHHHHHHHHHHHhCcccccCCcceeeEEEeCc-----CCCCCeEEeecC--CCCCEEEEECCCCcchhhhHH
Confidence            1 12344567889999999999999999999999999998     688999999988  679999999999999999999


Q ss_pred             HHHHHHHHHh
Q 026314          230 IAEYVAAKFL  239 (240)
Q Consensus       230 ~g~~va~~i~  239 (240)
                      +|+++|++|.
T Consensus       373 ~g~~la~~i~  382 (438)
T 3dje_A          373 IGNLIVDAME  382 (438)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999985

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.92  E-value=7.6e-24  Score=196.46  Aligned_cols=206  Identities=17%  Similarity=0.207  Sum_probs=152.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCC-C
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGL-D   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~-~   79 (240)
                      +|++.|+++|++|+++++|++|.++++++ .|++.+..          .|++.+++||.||||+|+|++.|+++++.. .
T Consensus       175 ~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~----------tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~~~  244 (561)
T 3da1_A          175 EIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRL----------TDTTHTIYAKKVVNAAGPWVDTLREKDRSKHG  244 (561)
T ss_dssp             HHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETT----------TCCEEEEEEEEEEECCGGGHHHHHHTTTCCCS
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcC----------CCceEEEECCEEEECCCcchHHHHHhcCCCCC
Confidence            57888999999999999999999998875 47765421          133457999999999999999999988321 2


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .++.|    .||++++++..........+++.+ ..+..++++|. +|.+++|++.+...+.        ..+..+++++
T Consensus       245 ~~v~p----~kG~~lvl~~~~~~~~~~~~~~~~-~dgr~v~~iP~-~g~~~iGtT~~~~~~~--------~~~~~~t~~~  310 (561)
T 3da1_A          245 KYLKL----SKGVHLVVDQSRFPLRQAVYFDTE-SDGRMIFAIPR-EGKTYIGTTDTFYDKD--------IASPRMTVED  310 (561)
T ss_dssp             SEEEE----EEEEEEEEEGGGSCCSSEEEECCS-SSCCCEEEEEE-TTEEEECCCCEEECSC--------TTCCCCCHHH
T ss_pred             ceEEe----ccEEEEEECCccCCCceEEEeccC-CCCcEEEEEec-CCCEEEcCCCCccCCC--------cCCCCCCHHH
Confidence            44455    999999997542222222344442 12344678887 7899999987543210        3466778899


Q ss_pred             HHHHHHHHhhhCCCCC--CCCccccccccCCeecCC-CC---CCC-CeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHH
Q 026314          160 AERFYPEIRKYYPDLR--DGSLQPSYAGIRPKLSGP-RQ---SPI-DFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAE  232 (240)
Q Consensus       160 ~~~~~~~~~~~~P~l~--~~~i~~~~aG~r~~~~~~-~~---~~~-~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~  232 (240)
                      ++++++.++++||.+.  ..++...|+|+||.+.++ ..   ..+ ++++. +    .+|++.++|..   +|+++.||+
T Consensus       311 i~~ll~~~~~~~P~l~~~~~~v~~~~aGlRPl~~~~~~~~~~~sR~~~i~~-~----~~gli~i~Ggk---~Tt~r~mAe  382 (561)
T 3da1_A          311 RDYILAAANYMFPSLRLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFF-S----DSGLISIAGGK---LTGYRKMAE  382 (561)
T ss_dssp             HHHHHHHHHHHCTTCCCCTTTEEEEEEEEEEEEEC-----------CCEEE-C----SSCCEEECCCC---STTHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCChhhEEEEeEEeccccCCCCCCccccccceEEEe-c----CCCeEEEeCCh---hhhHHHHHH
Confidence            9999999999999987  789999999999998653 11   123 44443 2    26999999987   999999999


Q ss_pred             HHHHHHh
Q 026314          233 YVAAKFL  239 (240)
Q Consensus       233 ~va~~i~  239 (240)
                      .+++++.
T Consensus       383 ~~~d~~~  389 (561)
T 3da1_A          383 RTVDAVA  389 (561)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.91  E-value=2.3e-24  Score=203.88  Aligned_cols=191  Identities=14%  Similarity=0.109  Sum_probs=153.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.|+++|++|+++++|++|+..+++|.|++++|.               +++||.||+|+|.|+..+.+++   .++
T Consensus       422 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~---------------~i~Ad~VVlAtG~~s~~l~~~~---~lp  483 (676)
T 3ps9_A          422 NVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQ---------------QATHSVVVLANGHQISRFSQTS---TLP  483 (676)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCGGGGGCSTTTT---TCS
T ss_pred             HHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCC---------------EEECCEEEECCCcchhcccccc---CCc
Confidence            5778889999999999999999999999999997763               7999999999999998887765   344


Q ss_pred             cCCCceeeceeEEEEcCCCCC-CccceeecCCCCCCCeeEEEeec--CCcEEEcCCccccCCcccccccccccccccchh
Q 026314           82 FIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDGGLGVHVTLDL--DGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~p~~~~~~~~~~~~~--~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +.|    .||+++.++..... .+...+.       ...|++|..  +|++++|.+.+..           ..+..++.+
T Consensus       484 l~p----~rGq~~~~~~~~~~~~l~~~l~-------~~~Yl~P~~~~~g~~~iG~t~~~~-----------~~d~~~~~~  541 (676)
T 3ps9_A          484 VYS----VAGQVSHIPTTPELAELKQVLC-------YDGYLTPQNPANQHHCIGASYHRG-----------SEDTAYSED  541 (676)
T ss_dssp             CEE----EEEEEEEEECCTTGGGCCSEEE-------SSSEECCCBTTTTEEEEECCCEET-----------CCCCCCCHH
T ss_pred             cee----ecCEEEEECCCcccccCCceeE-------CCeeeccccCCCCeEEEeeccCCC-----------CCCCCCCHH
Confidence            556    99999998754210 1111111       125888887  7889999876543           334556777


Q ss_pred             hHHHHHHHHhhhCCCCC-----CCCccccccccCCeecCCCCCCCCeEEecCCCCC-----------------------C
Q 026314          159 RAERFYPEIRKYYPDLR-----DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG-----------------------V  210 (240)
Q Consensus       159 ~~~~~~~~~~~~~P~l~-----~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~-----------------------~  210 (240)
                      ..+.+++.+.++||.+.     +..+.+.|+|+||.     ++|+.|+||..+  .                       .
T Consensus       542 ~~~~~l~~l~~~~P~l~~~~~~d~~~~~~~~G~R~~-----t~D~lPiiG~~p--~~~~~~~~y~~l~~~~~~~~~~~~~  614 (676)
T 3ps9_A          542 DQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCA-----TRDHLPMVGNVP--DYEATLVEYASLAEQKDEAVSAPVF  614 (676)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHTCCCTTCCEEEEEEEE-----CTTCCCEEEEEE--CHHHHHHHTTTTTSCCTTCCSCCEE
T ss_pred             HHHHHHHHHHHhCCCccccccCcccccceEEEEeCc-----cCCcCCccCcCC--ChHHHHHHHHhhhccccccccCCCC
Confidence            88899999999999986     34567899999999     678899999875  3                       5


Q ss_pred             CCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          211 PGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       211 ~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +|+|+++|++|+|+++||++|+++|++|.
T Consensus       615 ~~l~~a~G~g~~Gl~~Ap~~ae~lA~~i~  643 (676)
T 3ps9_A          615 DDLFMFAALGSRGLCSAPLCAEILAAQMS  643 (676)
T ss_dssp             EEEEEEECCTTCHHHHHHHHHHHHHHHHT
T ss_pred             CCEeeeecccccHHHHHHHHHHHHHHHHc
Confidence            79999999999999999999999999985

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.91  E-value=4.7e-24  Score=188.84  Aligned_cols=194  Identities=12%  Similarity=0.117  Sum_probs=154.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|.+.++++|++|+++++|++|+..+++ +.|++++|                +++||.||+|+|.|+..|.+++ +.++
T Consensus       179 ~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g----------------~~~a~~vV~a~G~~s~~l~~~~-g~~~  241 (405)
T 2gag_B          179 AFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG----------------TIHAGKVALAGAGHSSVLAEMA-GFEL  241 (405)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC----------------CEEEEEEEECCGGGHHHHHHHH-TCCC
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc----------------eEECCEEEECCchhHHHHHHHc-CCCC
Confidence            4678889999999999999999987765 56888777                7999999999999999999888 5565


Q ss_pred             ccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhH
Q 026314           81 VFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRA  160 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
                      ++.|    .+++++++++.. ......++.    .....+++|..+|++++|.+.+...          .++...+.+..
T Consensus       242 ~~~~----~~~~~~~~~~~~-~~~~~~~~~----~~~~~y~~p~~~g~~~ig~~~~~~~----------~~~~~~~~~~~  302 (405)
T 2gag_B          242 PIQS----HPLQALVSELFE-PVHPTVVMS----NHIHVYVSQAHKGELVMGAGIDSYN----------GYGQRGAFHVI  302 (405)
T ss_dssp             CEEE----EEEEEEEEEEBC-SCCCSEEEE----TTTTEEEEECTTSEEEEEEEECSSC----------CCSSCCCTHHH
T ss_pred             Cccc----cceeEEEecCCc-cccCceEEe----CCCcEEEEEcCCCcEEEEeccCCCC----------ccccCCCHHHH
Confidence            5555    899998876421 112222221    1234688888888999997654211          23334556788


Q ss_pred             HHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          161 ERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       161 ~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +.+.+.++++||.+...++.+.|+|+||.     ++|+.|+||..+   .+|+|+++|++|+|+++||.+|+++|++|.
T Consensus       303 ~~l~~~~~~~~p~l~~~~~~~~w~g~~~~-----t~d~~p~ig~~~---~~~l~~~~G~~g~G~~~a~~~g~~la~~i~  373 (405)
T 2gag_B          303 QEQMAAAVELFPIFARAHVLRTWGGIVDT-----TMDASPIISKTP---IQNLYVNCGWGTGGFKGTPGAGFTLAHTIA  373 (405)
T ss_dssp             HHHHHHHHHHCGGGGGCEECEEEEEEEEE-----ETTSCCEEEECS---SBTEEEEECCGGGCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCccccCCcceEEeecccc-----CCCCCCEecccC---CCCEEEEecCCCchhhHHHHHHHHHHHHHh
Confidence            99999999999999888888999999998     477889999865   579999999999999999999999999975

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.91  E-value=4.2e-24  Score=202.56  Aligned_cols=192  Identities=15%  Similarity=0.117  Sum_probs=152.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.++++|++|+++++|++|+..+++|.|+|++|.              .+++||.||+|+|.|+..+.+++   .++
T Consensus       417 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~--------------~~i~Ad~VVlAtG~~s~~l~~~~---~lp  479 (689)
T 3pvc_A          417 ALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQ--------------AAKHHATVILATGHRLPEWEQTH---HLP  479 (689)
T ss_dssp             HHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CC--------------CCEEESEEEECCGGGTTCSTTTT---TSC
T ss_pred             HHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCc--------------EEEECCEEEECCCcchhcccccc---CCc
Confidence            5778889999999999999999998888999987761              14899999999999998887765   344


Q ss_pred             cCCCceeeceeEEEEcCCCCC-CccceeecCCCCCCCeeEEEeec--CCcEEEcCCccccCCcccccccccccccccchh
Q 026314           82 FIPPAYYARGCYFSLANTKVA-PFKHLIYPIPEDGGLGVHVTLDL--DGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~-~~~~~i~~~p~~~~~~~~~~~~~--~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      +.|    .||+++.++..... .+...+.       ...|++|..  +|.+++|.+.+..           ..+..++.+
T Consensus       480 l~p----~rGq~~~~~~~~~~~~l~~v~~-------~~~Yl~P~~~~~g~~~iGat~~~~-----------~~d~~~~~~  537 (689)
T 3pvc_A          480 LSA----VRGQVSHIPTTPVLSQLQQVLC-------YDGYLTPVNPANQHHCIGASYQRG-----------DIATDFRLT  537 (689)
T ss_dssp             CEE----EEEEEEEEECCTTGGGCCSEEE-------SSSEECCCBTTTTEEEEECCCEET-----------BCCCCCCHH
T ss_pred             ccc----ccCcEEEECCCCccccCCeeEe-------CCceEccccCCCCeEEEEEeccCC-----------CCCCCCCHH
Confidence            556    99999998764210 1111111       125888887  7889999876543           334556777


Q ss_pred             hHHHHHHHHhhhCCCCC-----CCCccccccccCCeecCCCCCCCCeEEecCCCCC------------------------
Q 026314          159 RAERFYPEIRKYYPDLR-----DGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHG------------------------  209 (240)
Q Consensus       159 ~~~~~~~~~~~~~P~l~-----~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~------------------------  209 (240)
                      ..+.+++.+.++||.+.     +..+.+.|+|+||.     ++|+.++||..+  .                        
T Consensus       538 ~~~~ll~~l~~~~P~l~~~~~~~~~~~~~w~G~R~~-----t~D~lPiiG~~p--~~~~~~~~y~~l~~~~~~~~~~~~~  610 (689)
T 3pvc_A          538 EQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRCA-----IRDHLPMVGAVP--DYAATLAQYQDLSRRIQHGGESEVN  610 (689)
T ss_dssp             HHHHHHHHHHHHCTTCSGGGGCCCTTCCEEEEEEEE-----CTTSCCEEEEEE--CHHHHHHHSTTHHHHC--------C
T ss_pred             HHHHHHHHHHHhCCCccccccccccccceeEEEeee-----cCCCCcccCcCC--CHHHHHHHHHhhhcccccccccccc
Confidence            88899999999999987     34567899999999     678889999865  3                        


Q ss_pred             -------CCCEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          210 -------VPGLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       210 -------~~~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                             .+|+|+++|++|+|+++||++|+++|++|.
T Consensus       611 ~~~~~~~~~~l~~a~G~g~~Gl~~ap~~ae~lA~~i~  647 (689)
T 3pvc_A          611 DIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAAQMF  647 (689)
T ss_dssp             CCCCCCEEEEEEEEECCTTCHHHHHHHHHHHHHHHHT
T ss_pred             ccccCCCCCChHHhhcccccHHHHHHHHHHHHHHHHc
Confidence                   479999999999999999999999999985

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.90  E-value=1.1e-23  Score=187.71  Aligned_cols=198  Identities=15%  Similarity=0.077  Sum_probs=140.2

Q ss_pred             hhhHHHHHCCcEEEcCceEE---------EEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVI---------GGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALA   72 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~---------~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~   72 (240)
                      +|.+.++++|++|+++++|+         +|+..+++|.|+|+++                +++||.||+|+|.|+..|+
T Consensus       177 ~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g----------------~i~a~~VV~A~G~~s~~l~  240 (405)
T 3c4n_A          177 LAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR----------------QIRAGVIIVAAGAAGPALV  240 (405)
T ss_dssp             HHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE----------------EEEEEEEEECCGGGHHHHH
T ss_pred             HHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc----------------EEECCEEEECCCccHHHHH
Confidence            57788889999999999999         8887777787877766                7999999999999999999


Q ss_pred             H-HhcCCCCccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCcc--ccCCccccccccc
Q 026314           73 K-RFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVE--WIDGIDDTLSFLN  149 (240)
Q Consensus        73 ~-~~~~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~--~~~~~~~~~~~~~  149 (240)
                      + ++ +...++.|    .+|+++.++.+. ......++      ..++|++|..+|.+++|.+..  ......+. +.+.
T Consensus       241 ~~~~-g~~~~~~~----~~g~~~~~~~~~-~~~~~~~~------~~~~y~~p~~~g~~~~G~t~~~~~~~~~~~~-~~~~  307 (405)
T 3c4n_A          241 EQGL-GLHTRHGR----AYRQFPRLDLLS-GAQTPVLR------ASGLTLRPQNGGYTLVPAIHHRDPHGYHPAG-GSLT  307 (405)
T ss_dssp             HHHH-CCCCCCEE----EEEECCEECSCC-CTTCCEEE------ETTEEEEEETTEEEEECCCCSCBCSSCCCCC-CCBT
T ss_pred             HHhc-CCCCCccc----ceeEEEEECCCC-ccCCCeEE------CCcEEEEEcCCCeEEEeccccccccCcCccc-cccc
Confidence            8 88 55655556    999998886532 12222322      234788998888888987632  21100000 0000


Q ss_pred             ccccccchhhHHHHHHHHhhhCCCCCCCC---------ccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCC
Q 026314          150 RFDYSVNANRAERFYPEIRKYYPDLRDGS---------LQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIE  220 (240)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~P~l~~~~---------i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~  220 (240)
                      ..+...+.+.++.+.+.+ ++||.|....         +.+.|+|+||.     ++|+.++||..+    +|+|+++|++
T Consensus       308 ~~~~~~~~~~~~~l~~~~-~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~-----t~D~~P~ig~~~----~gl~~a~G~~  377 (405)
T 3c4n_A          308 GVPTGLRRELLEDLVGLM-DAVPALAGEGLELGRSSADVPGAWLALPGG-----RPDAPPQAEELA----PGLHLLLGGP  377 (405)
T ss_dssp             TBCCSSCHHHHHHHHHHT-TTCGGGGSSCBCCCSSGGGSCEEEEEEGGG-----CTTCCCEEEEEE----TTEEEEECCT
T ss_pred             ccccCCCHHHHHHHHHHH-HhCCCccccCccccccccceeeEEEeecCc-----CCCCCCEecccC----CCeEEEEccC
Confidence            112233455667777654 8999987754         88899999998     578889999875    6999999998


Q ss_pred             CchHhhhHHHHHHHHHHHh
Q 026314          221 SPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       221 ~~G~t~ap~~g~~va~~i~  239 (240)
                      ++ +++||++|++++++|.
T Consensus       378 g~-~~~ap~~a~~la~~i~  395 (405)
T 3c4n_A          378 LA-DTLGLAAAHELAQRVS  395 (405)
T ss_dssp             TH-HHHHHHHHHHHHHHHH
T ss_pred             cH-HHHHHHHHHHHHHHHh
Confidence            76 5999999999999985

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.90  E-value=2.9e-22  Score=186.23  Aligned_cols=207  Identities=18%  Similarity=0.213  Sum_probs=147.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC-
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD-   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~-   79 (240)
                      ++++.|+++|++|+++++|++++++++++ .|++.+..          .+++++|+||.||||+|+|++.|++++ +.. 
T Consensus       193 ~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~----------tg~~~~i~A~~VV~AaG~ws~~l~~~~-g~~~  261 (571)
T 2rgh_A          193 DNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLL----------TDEVIEIKAKLVINTSGPWVDKVRNLN-FTRP  261 (571)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETT----------TCCEEEEEBSCEEECCGGGHHHHHTTC-CSSC
T ss_pred             HHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcC----------CCCEEEEEcCEEEECCChhHHHHHHhh-ccCc
Confidence            57788999999999999999999988764 46643210          012347999999999999999999877 322 


Q ss_pred             --CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccch
Q 026314           80 --NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA  157 (240)
Q Consensus        80 --~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (240)
                        .++.|    .||++++++..........+++.+...+..++++|. +|.+++|++.+.....        ..+..+++
T Consensus       262 ~~~~i~p----~rG~~l~~~~~~~~~~~~~~~~~~~~dgr~~~~~P~-~~~~~iG~t~~~~~~~--------~~~~~~~~  328 (571)
T 2rgh_A          262 VSPKMRP----TKGIHLVVDAKKLPVPQPTYFDTGKQDGRMVFAIPR-ENKTYFGTTDTDYQGD--------FTDPKVTQ  328 (571)
T ss_dssp             CCCCBCC----EEEEEEEEEGGGSCCSSCEEEECSSSSSCEEEEEEE-TTEEEECCCCEECCSC--------SSSCCCCH
T ss_pred             cCceeec----cceEEEEeccccCCCCcEEEEeccCCCCcEEEEEEc-CCeEEEcCCCcCCCCC--------cCCCCCCH
Confidence              44666    999999997532111112333332112344678887 5889999886532210        33556778


Q ss_pred             hhHHHHHHHHhhhCCC--CCCCCccccccccCCeecCC-C---CCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHH
Q 026314          158 NRAERFYPEIRKYYPD--LRDGSLQPSYAGIRPKLSGP-R---QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIA  231 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P~--l~~~~i~~~~aG~r~~~~~~-~---~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g  231 (240)
                      ++++++++.++++||.  +...++.+.|+|+||++.+. .   ..+++++|+..    .+|+|+++|..   +|+++.+|
T Consensus       329 ~~~~~ll~~~~~~~P~~~l~~~~v~~~waG~Rp~~~d~~~~~~~~~r~~~i~~~----~~gl~~v~GGk---~Tt~r~~A  401 (571)
T 2rgh_A          329 EDVDYLLDVINHRYPEANITLADIEASWAGLRPLLIGNSGSPSTISRGSSLERE----PDGLLTLSGGK---ITDYRKMA  401 (571)
T ss_dssp             HHHHHHHHHHHHHSTTTCCCGGGCCEEEEEEECCBCC-----------EEEEEC----TTSCEEEEECC---GGGHHHHH
T ss_pred             HHHHHHHHHHHHhcCccCCchhceeEEeEEeeeccCCCCCCcccCCCCcEEecC----CCCeEEEeCcc---hhhHHHHH
Confidence            8999999999999997  47788999999999998653 1   12567888653    47999888755   99999999


Q ss_pred             HHHHHHHh
Q 026314          232 EYVAAKFL  239 (240)
Q Consensus       232 ~~va~~i~  239 (240)
                      +.+++++.
T Consensus       402 e~~~~~i~  409 (571)
T 2rgh_A          402 EGALRLIR  409 (571)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.90  E-value=2.7e-22  Score=183.56  Aligned_cols=208  Identities=14%  Similarity=0.111  Sum_probs=155.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHH-hcC-CC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKR-FIG-LD   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~-~~~-~~   79 (240)
                      +|++.|+++|++|+++++|++++++++.|.|++.+..          .|++.+++||.||||+|+|++.|.+. ++. ..
T Consensus       154 ~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~----------~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~  223 (501)
T 2qcu_A          154 ANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDID----------TGKKYSWQARGLVNATGPWVKQFFDDGMHLPSP  223 (501)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETT----------TCCEEEEEESCEEECCGGGHHHHHHHHTCCCCS
T ss_pred             HHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECC----------CCCEEEEECCEEEECCChhHHHHHHHhccCCcc
Confidence            5788999999999999999999988877777774210          12344799999999999999999985 422 13


Q ss_pred             CccCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           80 NVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      .++.|    .||++++++... ......+++.++  +..+++.|..+|.+++|++.......        +.+..++++.
T Consensus       224 ~~i~p----~rG~~~~~~~~~-~~~~~~~~~~~d--g~~~~~~P~~~g~~~iG~t~~~~~~~--------~~~~~~~~~~  288 (501)
T 2qcu_A          224 YGIRL----IKGSHIVVPRVH-TQKQAYILQNED--KRIVFVIPWMDEFSIIGTTDVEYKGD--------PKAVKIEESE  288 (501)
T ss_dssp             SCBCC----EEEEEEEEECSS-SCSCEEEEECTT--SCEEEEEEETTTEEEEECCCEECCSC--------GGGCCCCHHH
T ss_pred             ccccc----ceeEEEEECCCC-CCceEEEeecCC--CCEEEEEEcCCCcEEEcCCCCCCCCC--------cCCCCCCHHH
Confidence            55677    999999997432 111223444222  34578899877889999876532210        3456677889


Q ss_pred             HHHHHHHHhhhCC-CCCCCCccccccccCCeecCC----CCCCCCeEEe--cCCCCCCCCEEEEeCCCCchHhhhHHHHH
Q 026314          160 AERFYPEIRKYYP-DLRDGSLQPSYAGIRPKLSGP----RQSPIDFVIQ--GDDTHGVPGLVNLFGIESPGLTSSMAIAE  232 (240)
Q Consensus       160 ~~~~~~~~~~~~P-~l~~~~i~~~~aG~r~~~~~~----~~~~~~~ii~--~~~~~~~~~~~~~~G~~~~G~t~ap~~g~  232 (240)
                      ++++++.++++|| .|...++.+.|+|+||++.+.    +...++|+|.  ...  +.++++.++|.   |+|++|.+|+
T Consensus       289 ~~~l~~~~~~~~p~~l~~~~v~~~~aG~Rp~~~d~~p~~~~~~~~~~i~~~~~~--~~~gl~~i~Gg---~~t~~~~~Ae  363 (501)
T 2qcu_A          289 INYLLNVYNTHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDYTLDIHDEN--GKAPLLSVFGG---KLTTYRKLAE  363 (501)
T ss_dssp             HHHHHHHHHHHBSSCCCGGGCCEEEEEEECCBCCCCSSGGGSCCCCEEEEEEET--TEEEEEEEECC---CGGGHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCcccEEEEEEEEeeecCCCCCccccCcCceEEEecccC--CCCCeEEEeCc---cccchHHHHH
Confidence            9999999999999 899899999999999998652    1224677776  322  35689998876   5999999999


Q ss_pred             HHHHHHh
Q 026314          233 YVAAKFL  239 (240)
Q Consensus       233 ~va~~i~  239 (240)
                      .+++++.
T Consensus       364 ~~~~~~~  370 (501)
T 2qcu_A          364 HALEKLT  370 (501)
T ss_dssp             HHHHHHG
T ss_pred             HHHHHHH
Confidence            9999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=99.89  E-value=1.4e-23  Score=183.10  Aligned_cols=179  Identities=17%  Similarity=0.206  Sum_probs=139.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.|+++|++|++ ++|++++..          +                .++||.||||+|+|+..|++     ..+
T Consensus       147 ~l~~~~~~~Gv~i~~-~~V~~i~~~----------~----------------~~~a~~VV~A~G~~s~~l~~-----~~~  194 (351)
T 3g3e_A          147 WLTERLTERGVKFFQ-RKVESFEEV----------A----------------REGADVIVNCTGVWAGALQR-----DPL  194 (351)
T ss_dssp             HHHHHHHHTTCEEEE-CCCCCHHHH----------H----------------HTTCSEEEECCGGGGGGTSC-----CTT
T ss_pred             HHHHHHHHCCCEEEE-EEeCCHHHh----------h----------------cCCCCEEEECCCcChHhhcC-----CCc
Confidence            678899999999998 999877431          2                36799999999999987653     244


Q ss_pred             cCCCceeeceeEEEEcCCCCCCccceeecCCC--CCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           82 FIPPAYYARGCYFSLANTKVAPFKHLIYPIPE--DGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~--~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      +.|    .||+++.++++.   ++..++....  ......|++|..+ ++++|++.+..           .++..++++.
T Consensus       195 l~p----~rg~~~~~~~~~---~~~~~~~~~~~~~~~~~~y~~p~~~-~~~iGg~~~~~-----------~~~~~~~~~~  255 (351)
T 3g3e_A          195 LQP----GRGQIMKVDAPW---MKHFILTHDPERGIYNSPYIIPGTQ-TVTLGGIFQLG-----------NWSELNNIQD  255 (351)
T ss_dssp             CEE----EEEEEEEEECTT---CCSEEEECCTTTCTTCSCEEEECSS-CEEEECCCEET-----------CCCCSCCHHH
T ss_pred             eee----cCCcEEEEeCCC---cceEEEeccccCCCCceeEEEeCCC-cEEEeeeeecC-----------CCCCCCCHHH
Confidence            455    999999998641   3344432210  1123468899866 89999876542           3455567788


Q ss_pred             HHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCe----EEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHH
Q 026314          160 AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDF----VIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVA  235 (240)
Q Consensus       160 ~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~----ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va  235 (240)
                      .+.+++.+.++||.|...++.+.|+|+||.     ++| -+    +||..+  ..+|+|+++|++|+|+++||++|++++
T Consensus       256 ~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~-----t~D-~p~~~~~ig~~~--~~~~~~~~~G~~g~G~~~ap~~g~~la  327 (351)
T 3g3e_A          256 HNTIWEGCCRLEPTLKNARIIGERTGFRPV-----RPQ-IRLEREQLRTGP--SNTEVIHNYGHGGYGLTIHWGCALEAA  327 (351)
T ss_dssp             HHHHHHHHHHHCGGGGGCEEEEEEEEEEEE-----CSS-CEEEEEEECCSS--SCEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCccCCcEeeeeEeeCCC-----CCC-ccceeeeccCCC--CCCeEEEEeCCCcchHhhhHHHHHHHH
Confidence            999999999999999989999999999999     455 33    477766  578999999999999999999999999


Q ss_pred             HHHh
Q 026314          236 AKFL  239 (240)
Q Consensus       236 ~~i~  239 (240)
                      ++|.
T Consensus       328 ~li~  331 (351)
T 3g3e_A          328 KLFG  331 (351)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.89  E-value=2e-23  Score=182.95  Aligned_cols=182  Identities=21%  Similarity=0.202  Sum_probs=139.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|++.|+++|++|++ ++|++++..          -                + +||.||+|+|.|+..|+.+.   +.+
T Consensus       147 ~l~~~~~~~G~~i~~-~~v~~l~~~----------~----------------~-~a~~VV~A~G~~s~~l~~~~---~~~  195 (363)
T 1c0p_A          147 YLARELQKLGATFER-RTVTSLEQA----------F----------------D-GADLVVNATGLGAKSIAGID---DQA  195 (363)
T ss_dssp             HHHHHHHHTTCEEEE-CCCSBGGGT----------C----------------S-SCSEEEECCGGGGGTSBTTC---CTT
T ss_pred             HHHHHHHHCCCEEEE-EEcccHhhc----------C----------------c-CCCEEEECCCcchhhccCcc---cCC
Confidence            678899999999998 999887542          1                3 58999999999998876542   455


Q ss_pred             cCCCceeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhHH
Q 026314           82 FIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAE  161 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (240)
                      +.|    .||+++.+++..  .+.  .+++... ..+.|++|..+|++++|++.+..           .++..++.+..+
T Consensus       196 ~~p----~rg~~~~~~~~~--~~~--~~~~~~~-~~~~y~~p~~~g~~~iG~t~~~~-----------~~~~~~~~~~~~  255 (363)
T 1c0p_A          196 AEP----IRGQTVLVKSPC--KRC--TMDSSDP-ASPAYIIPRPGGEVICGGTYGVG-----------DWDLSVNPETVQ  255 (363)
T ss_dssp             EEE----EEEEEEEEECCC--CCC--EEECSCT-TCCEEEEEETTTEEEEECCCEET-----------CCCCSCCHHHHH
T ss_pred             ccc----cCCeEEEEeCCc--ccc--eEeeccC-CCcEEEEEcCCCEEEEEeeeccC-----------CCCCCCCHHHHH
Confidence            556    999999997642  121  1222211 12378899888999999876543           334556778899


Q ss_pred             HHHHHHhhhCCCC------CCCCccccccccCCeecCCCCCCCCeEEecC-C------------------CCCC--CCEE
Q 026314          162 RFYPEIRKYYPDL------RDGSLQPSYAGIRPKLSGPRQSPIDFVIQGD-D------------------THGV--PGLV  214 (240)
Q Consensus       162 ~~~~~~~~~~P~l------~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~-~------------------~~~~--~~~~  214 (240)
                      .+++.+.++||.|      ...++.+.|+|+||.     ++|+.++++.. +                  ..+.  +|+|
T Consensus       256 ~l~~~~~~~~P~l~~~~~~~~~~i~~~w~G~rp~-----t~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~~~~~  330 (363)
T 1c0p_A          256 RILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPA-----RRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKEVTLV  330 (363)
T ss_dssp             HHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEE-----ETTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEEEEEE
T ss_pred             HHHHHHHHhCccccCCcccccceEeeceEEECCC-----CCCCceeEEEecccccccccCccccccccccccccccceEE
Confidence            9999999999998      446788999999999     46778887652 0                  0024  7999


Q ss_pred             EEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          215 NLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       215 ~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      +++|++|+||++||++|++++++|.
T Consensus       331 ~a~G~~g~G~~~a~~~g~~~a~li~  355 (363)
T 1c0p_A          331 HAYGFSSAGYQQSWGAAEDVAQLVD  355 (363)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCCcchheeccHHHHHHHHHH
Confidence            9999999999999999999999975

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.88  E-value=2e-22  Score=194.53  Aligned_cols=206  Identities=14%  Similarity=0.169  Sum_probs=152.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|++.|+++|++|+++++|++|+..++++ .|+|++|                +++||.||+|+|.|+..+++++ +.++
T Consensus       156 ~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G----------------~i~Ad~VV~AaG~~s~~l~~~~-g~~~  218 (830)
T 1pj5_A          156 LLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG----------------VIPADIVVSCAGFWGAKIGAMI-GMAV  218 (830)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE----------------EEECSEEEECCGGGHHHHHHTT-TCCC
T ss_pred             HHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc----------------EEECCEEEECCccchHHHHHHh-CCCc
Confidence            57889999999999999999999988876 4888877                8999999999999999999988 5566


Q ss_pred             ccCCCceeeceeEEEEcCCCCC-Ccc----ceeecCCCCCCCeeEEEeecCCcEEEcCCcccc--CCcccccc-------
Q 026314           81 VFIPPAYYARGCYFSLANTKVA-PFK----HLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWI--DGIDDTLS-------  146 (240)
Q Consensus        81 ~~~p~~~~~~g~~~~~~~~~~~-~~~----~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~--~~~~~~~~-------  146 (240)
                      ++.|    ++++++++++.... ...    ..-.|+........|++|. .+++++|.+....  .++.+.-.       
T Consensus       219 pl~p----~~g~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~y~r~~-~~~l~iG~~~~~~~~~~~~~~~~t~~~~~~  293 (830)
T 1pj5_A          219 PLLP----LAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREH-GDRYGIGSYAHRPMPVDVDTLGAYAPETVS  293 (830)
T ss_dssp             CCEE----EEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGGTEEEEEE-TTEEEEEECCSCCCBCCGGGSCCCCGGGCB
T ss_pred             ccee----ceeEEEEEecCcccccccccccCCCCCeEEcCCCCEEEEEe-CCeEEEeccCCCCcccCccccccccccccc
Confidence            6667    99999998753110 000    0001111111223577776 4588888753210  00000000       


Q ss_pred             -cccccccccchhhHHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHh
Q 026314          147 -FLNRFDYSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLT  225 (240)
Q Consensus       147 -~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t  225 (240)
                       .....+...+.+.++.+++.+.++||.|...++.+.|+|+||.     ++|+.|+||..+  +.+|+|+++|+   |++
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~-----t~D~~PiIG~~p--~~~gl~va~G~---G~~  363 (830)
T 1pj5_A          294 EHHMPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFSF-----TPDGGPLLGESK--ELDGFYVAEAV---WVT  363 (830)
T ss_dssp             TTBSTTEECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEE-----CTTSCCEEEECS--SSBTEEEEESC---CGG
T ss_pred             ccccccccCCCHHHHHHHHHHHHHhCccccccCcceEEEeeccc-----CCCCCeeeccCC--CCCCEEEEECc---hHH
Confidence             0001234456778899999999999999999999999999998     688899999987  68999999986   699


Q ss_pred             hhHHHHHHHHHHHh
Q 026314          226 SSMAIAEYVAAKFL  239 (240)
Q Consensus       226 ~ap~~g~~va~~i~  239 (240)
                      +||++|+++|++|.
T Consensus       364 ~ap~~g~~la~li~  377 (830)
T 1pj5_A          364 HSAGVAKAMAELLT  377 (830)
T ss_dssp             GHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHh
Confidence            99999999999985

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.76  E-value=1.5e-08  Score=89.62  Aligned_cols=60  Identities=12%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++.|++|+++++|++++..++++  .|++++|             ++.+++||.||+|+|.|+ .+.+.+
T Consensus       111 ~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g-------------~~~~~~a~~vV~A~G~~s-~l~~~~  172 (421)
T 3nix_A          111 TLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDING-------------NKREIEARFIIDASGYGR-VIPRMF  172 (421)
T ss_dssp             HHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTS-------------CEEEEEEEEEEECCGGGC-HHHHHT
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCC-------------CEEEEEcCEEEECCCCch-hhHHhc
Confidence            47788888999999999999999988765  4666666             233599999999999998 677777

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.69  E-value=5.7e-07  Score=79.45  Aligned_cols=53  Identities=15%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +|++.++++|++|+++++|++|+.+++++. |+++.+                +++||.||+|+|+|...
T Consensus       201 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~----------------~~~ad~VV~a~~~~~~~  254 (425)
T 3ka7_A          201 ALETVISANGGKIHTGQEVSKILIENGKAAGIIADDR----------------IHDADLVISNLGHAATA  254 (425)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE----------------EEECSEEEECSCHHHHH
T ss_pred             HHHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCE----------------EEECCEEEECCCHHHHH
Confidence            578888999999999999999999999887 887633                79999999999998754

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.50  E-value=2.2e-06  Score=74.26  Aligned_cols=202  Identities=13%  Similarity=0.108  Sum_probs=102.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      .|.+.|++.|++++++++|+++..+++++. +....+            +++.+++||.||.|.|.++. +.+.+ +...
T Consensus       107 ~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~------------~~~~~~~a~~vIgAdG~~S~-vr~~~-g~~~  172 (397)
T 3oz2_A          107 HLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHN------------NEIVDVRAKMVIAADGFESE-FGRWA-GLKS  172 (397)
T ss_dssp             HHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEET------------TEEEEEEEEEEEECCCTTCH-HHHHH-TCGG
T ss_pred             HHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeeccc------------ccceEEEEeEEEeCCccccH-HHHHc-CCCc
Confidence            477889999999999999999999888765 333222            12447999999999999774 66666 3332


Q ss_pred             ccCCCceee-ceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhh
Q 026314           81 VFIPPAYYA-RGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANR  159 (240)
Q Consensus        81 ~~~p~~~~~-~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (240)
                      ...+..... ..++........+... .++.-........++.|..++...+|......              .......
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~vg~~~~~~--------------~~~~~~~  237 (397)
T 3oz2_A          173 VILARNDIISALQYRMINVDVDPDYT-DFYLGSIAPAGYIWVFPKGEGMANVGIGSSIN--------------WIHNRFE  237 (397)
T ss_dssp             GCCCGGGEEEEEEEEEESCCCCTTEE-EEECSTTSTTEEEEEEEEETTEEEEEEEEETT--------------TSCSHHH
T ss_pred             ccccceeeeeeEEEEeeccccCcccc-eeeeeccCCCceEEEeecccceeEEEEeeccc--------------hhhhhhh
Confidence            222200001 1111111111111111 11111111111234566656665555321110              0011233


Q ss_pred             HHHHHHHHhhhCCCCCCCCccccccccCCeecCC-C-CCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314          160 AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGP-R-QSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  237 (240)
Q Consensus       160 ~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~-~-~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~  237 (240)
                      ....++...+.+|.+......+.+.|..|..... . ..++-+++|..-     +.  +.-+.|.|+.+|..-|+++|+.
T Consensus       238 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvGDAA-----~~--~~P~~G~Gi~~A~~~g~~~A~~  310 (397)
T 3oz2_A          238 LKNYLDRFIENHPGLKKGQDIQLVTGGVSVSKVKMPITMPGLMLVGDAA-----RL--IDPITGGGIANAIVSGMYAAQV  310 (397)
T ss_dssp             HHHHHHHHHHTCHHHHTSEEEEEEEEEEECCCCCSCCEETTEEECGGGG-----TC--SCTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccccccceeeeeeccccccCcccceeeeeEEEccccc-----cc--CCCCcchhHHHHHHHHHHHHHH
Confidence            4455555556667766655555566655442110 0 011222333221     11  1124677888888888877776


Q ss_pred             Hh
Q 026314          238 FL  239 (240)
Q Consensus       238 i~  239 (240)
                      |.
T Consensus       311 i~  312 (397)
T 3oz2_A          311 TK  312 (397)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.32  E-value=2.2e-06  Score=75.79  Aligned_cols=55  Identities=7%  Similarity=0.055  Sum_probs=45.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|++.++++|++|+++++|++|+.++++| |+++.+                +++||.||+|+|+|..  .+++
T Consensus       194 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~g~----------------~~~ad~Vv~a~~~~~~--~~ll  248 (421)
T 3nrn_A          194 ELERIIMENKGKILTRKEVVEINIEEKKV-YTRDNE----------------EYSFDVAISNVGVRET--VKLI  248 (421)
T ss_dssp             HHHHHHHTTTCEEESSCCEEEEETTTTEE-EETTCC----------------EEECSEEEECSCHHHH--HHHH
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEEECCEE-EEeCCc----------------EEEeCEEEECCCHHHH--HHhc
Confidence            57788889999999999999999988889 765443                7999999999998753  3555

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.29  E-value=8e-06  Score=75.60  Aligned_cols=67  Identities=9%  Similarity=0.062  Sum_probs=53.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~   79 (240)
                      .|.+.+++.|++|+++++|++++..+++++|++  ++|              +.+++||.||.|.|.++ .+.+++ +++
T Consensus       153 ~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G--------------~~~~~a~~vV~ADG~~S-~vR~~l-Gi~  216 (570)
T 3fmw_A          153 LLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSG--------------PYPVRARYGVGCDGGRS-TVRRLA-ADR  216 (570)
T ss_dssp             HHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTE--------------EEEEEESEEEECSCSSC-HHHHHT-TCC
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCC--------------cEEEEeCEEEEcCCCCc-hHHHHc-CCC
Confidence            467788888999999999999998888888776  444              12799999999999999 788888 455


Q ss_pred             CccCC
Q 026314           80 NVFIP   84 (240)
Q Consensus        80 ~~~~p   84 (240)
                      .+..+
T Consensus       217 ~~~~~  221 (570)
T 3fmw_A          217 FPGTE  221 (570)
T ss_dssp             CCCCC
T ss_pred             Cccce
Confidence            44433

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.27  E-value=5.3e-06  Score=75.36  Aligned_cols=192  Identities=9%  Similarity=0.004  Sum_probs=99.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD   79 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~   79 (240)
                      .|.+.|++.|++++++ +|++++..+++  +.|++++|.               +++||.||.|+|.|+..+.+++ +.+
T Consensus       178 ~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~---------------~~~ad~vV~A~G~~S~~~~~~~-g~~  240 (511)
T 2weu_A          178 YLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHG---------------EISGDLFVDCTGFRGLLINQTL-GGR  240 (511)
T ss_dssp             HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSC---------------EEECSEEEECCGGGCCCCCCCT-CCC
T ss_pred             HHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCC---------------EEEcCEEEECCCcchHHHHHHh-CCC
Confidence            4677888899999999 99999885543  568887772               6999999999999987655555 333


Q ss_pred             CccCCCceeeceeEE-EEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchh
Q 026314           80 NVFIPPAYYARGCYF-SLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNAN  158 (240)
Q Consensus        80 ~~~~p~~~~~~g~~~-~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (240)
                      ....++..+....+. .+.................+ ....++.|..+ +..+|..  +...         .    .+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~P~~~-~~~~g~~--~~~~---------~----~~~~  303 (511)
T 2weu_A          241 FQSFSDVLPNNRAVALRVPRENDEDMRPYTTATAMS-AGWMWTIPLFK-RDGNGYV--YSDE---------F----ISPE  303 (511)
T ss_dssp             EEECTTTCCCCEEEEEEEECSSGGGCCSSEEEEEET-TEEEEEEECSS-EEEEEEE--ECTT---------T----SCHH
T ss_pred             CccccccCcccceEEEEeccCCCCCCCcceeceecC-CCcEEEEECCC-ceEEEEE--ECCC---------C----CCHH
Confidence            211000111322222 22211000010100000000 11234455433 3444321  1100         1    1222


Q ss_pred             h-HHHHHHHHhhhCCCCCCCCccccccccCCeecCCCCCCCCeEEecCCCCCCCCEEEEeCCCCchHhhhHHHHHHHHHH
Q 026314          159 R-AERFYPEIRKYYPDLRDGSLQPSYAGIRPKLSGPRQSPIDFVIQGDDTHGVPGLVNLFGIESPGLTSSMAIAEYVAAK  237 (240)
Q Consensus       159 ~-~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~G~~~~G~t~ap~~g~~va~~  237 (240)
                      + .+.+.+.+ ...|.+....+.+.|.|.++...    .++-++||...     +.+  .-+.|.|+.+|...|..++++
T Consensus       304 ~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~rv~liGDAA-----h~~--~P~~g~G~~~a~~da~~La~~  371 (511)
T 2weu_A          304 EAERELRSTV-APGRDDLEANHIQMRIGRNERTW----INNCVAVGLSA-----AFV--EPLESTGIFFIQHAIEQLVKH  371 (511)
T ss_dssp             HHHHHHHHHH-CTTCTTSCCEEEECCCEEESCSE----ETTEEECGGGT-----EEC--CGGGCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHh-CcccccccceeEEeecccccccc----CCCEEEEechh-----hcc--CccccccHHHHHHHHHHHHHH
Confidence            2 23333333 33455554555566777765421    13334455432     222  235788999999999999987


Q ss_pred             Hh
Q 026314          238 FL  239 (240)
Q Consensus       238 i~  239 (240)
                      +.
T Consensus       372 l~  373 (511)
T 2weu_A          372 FP  373 (511)
T ss_dssp             CC
T ss_pred             hc
Confidence            63

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.24  E-value=2.3e-05  Score=70.14  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=47.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++.|++++++++|+++...++++. |++.   +|             ++.+++||.||.|.|.++. +.+.+
T Consensus       105 ~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G-------------~~~~~~ad~VV~AdG~~s~-vr~~l  168 (453)
T 3atr_A          105 RVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTN-------------EELTVYSKVVVEATGYSRS-FRSKL  168 (453)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTT-------------EEEEEECSEEEECCGGGCT-TGGGS
T ss_pred             HHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCC-------------ceEEEEcCEEEECcCCchh-hHHhc
Confidence            467788889999999999999998888764 5543   34             2336999999999999886 56655

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.08  E-value=9.1e-05  Score=67.31  Aligned_cols=65  Identities=20%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      .|.+.++++|++|+++++|++++..+++++|++.++.           | +.+++||.||.|.|.+|. +.+.+ +++.
T Consensus       112 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~-----------g-~~~~~a~~vVgADG~~S~-VR~~l-g~~~  176 (499)
T 2qa2_A          112 VLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPD-----------G-PRSLTTRYVVGCDGGRST-VRKAA-GFDF  176 (499)
T ss_dssp             HHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSS-----------C-EEEEEEEEEEECCCTTCH-HHHHT-TCCC
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC-----------C-cEEEEeCEEEEccCcccH-HHHHc-CCCC
Confidence            4677888899999999999999988888888876652           2 347999999999999985 77777 4443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.04  E-value=1.2e-05  Score=74.65  Aligned_cols=60  Identities=18%  Similarity=0.366  Sum_probs=47.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++.|++++++++|+++... ++.+.|++. +|             ++.+++||.||.|+|.++. +.+.+
T Consensus       133 ~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G-------------~~~~i~AdlVV~AdG~~S~-lr~~l  194 (591)
T 3i3l_A          133 LLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGG-------------ESVTVESDFVIDAGGSGGP-ISRKL  194 (591)
T ss_dssp             HHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETT-------------EEEEEEESEEEECCGGGCH-HHHHH
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCC-------------ceEEEEcCEEEECCCCcch-hHHHc
Confidence            4677888999999999999999876 456778776 44             1237999999999999875 66666

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.02  E-value=1.4e-05  Score=71.20  Aligned_cols=58  Identities=19%  Similarity=0.180  Sum_probs=52.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PAL   71 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~l   71 (240)
                      +|.+.+++.|++|+++++|++|+..++++.|++++|                +++||.||+|+|.|+          ..+
T Consensus       137 ~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g----------------~i~ad~VIlAtG~~S~p~~gs~g~g~~l  200 (417)
T 3v76_A          137 MLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG----------------TVDAASLVVASGGKSIPKMGATGLAYRI  200 (417)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE----------------EEEESEEEECCCCSSCGGGTCCCHHHHH
T ss_pred             HHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc----------------EEEeeEEEECCCCccCCCCCCCcHHHHH
Confidence            467788889999999999999999888899999887                799999999999998          567


Q ss_pred             HHHh
Q 026314           72 AKRF   75 (240)
Q Consensus        72 ~~~~   75 (240)
                      ++.+
T Consensus       201 a~~~  204 (417)
T 3v76_A          201 AEQF  204 (417)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            7777

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.01  E-value=0.00011  Score=66.68  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=52.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      .|.+.++++|++|+++++|++++..+++++|++.++.           | +.+++||.||.|.|.+|. +.+.+ +.+.
T Consensus       111 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~-----------g-~~~~~a~~vVgADG~~S~-VR~~l-g~~~  175 (500)
T 2qa1_A          111 HLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPE-----------G-KHTLRAAYLVGCDGGRSS-VRKAA-GFDF  175 (500)
T ss_dssp             HHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETT-----------E-EEEEEESEEEECCCTTCH-HHHHT-TCCC
T ss_pred             HHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCC-----------C-CEEEEeCEEEECCCcchH-HHHHc-CCCc
Confidence            4677888899999999999999999888888776551           1 247999999999999985 77777 4443

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.00  E-value=0.00015  Score=64.40  Aligned_cols=196  Identities=12%  Similarity=0.087  Sum_probs=100.0

Q ss_pred             cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC----ccCCCce
Q 026314           12 TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN----VFIPPAY   87 (240)
Q Consensus        12 a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~----~~~p~~~   87 (240)
                      ++|+++++|++|+..+++|.|+|++|+               +++||+||+|+.++.  +.+.+...+.    ..++ ..
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~ad~vi~a~p~~~--~~~l~~~~~~~~~~~~~~-~~  309 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGV---------------TLDADSVIVTAPHKA--AAGMLSELPAISHLKNMH-ST  309 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSC---------------EEEESEEEECSCHHH--HHHHTTTSTTHHHHHTCE-EE
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCC---------------EEECCEEEECCCHHH--HHHHcCCchhhHHHhcCC-CC
Confidence            699999999999998888999998873               699999999999776  3333311111    0011 11


Q ss_pred             eeceeEEEEcCCCC-CCccceeecCCCCCCC---eeEE----Ee--ecCCcEEEcCCccccCCcccccccccccccccch
Q 026314           88 YARGCYFSLANTKV-APFKHLIYPIPEDGGL---GVHV----TL--DLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNA  157 (240)
Q Consensus        88 ~~~g~~~~~~~~~~-~~~~~~i~~~p~~~~~---~~~~----~~--~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  157 (240)
                      .+...++.++.+.- ......-+-++.....   ++.+    .+  ..+|..++...... ....       ......++
T Consensus       310 ~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~~l~~~~~~-~~~~-------~~~~~~~~  381 (470)
T 3i6d_A          310 SVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGK-AGDE-------SIVDLSDN  381 (470)
T ss_dssp             EEEEEEEEESSTTCCCSSCSSEEEECSTTCCSEEEEEEHHHHCGGGSCTTCEEEEEEECC-SSCC-------GGGTSCHH
T ss_pred             ceEEEEEEECchhcCCCCCCeEEEccCCCCCCceEEEEEcCcCCCcCCCCCEEEEEEECC-CCCc-------cccCCCHH
Confidence            13444455554310 0011111111111100   0110    00  01222221110000 0000       11222345


Q ss_pred             hhHHHHHHHHhhhCCCCCCCC--ccccccccCCeecCCCCCCCCeE---Eec-C-CCCCCCCEEEEeC-CCCchHhhhHH
Q 026314          158 NRAERFYPEIRKYYPDLRDGS--LQPSYAGIRPKLSGPRQSPIDFV---IQG-D-DTHGVPGLVNLFG-IESPGLTSSMA  229 (240)
Q Consensus       158 ~~~~~~~~~~~~~~P~l~~~~--i~~~~aG~r~~~~~~~~~~~~~i---i~~-~-~~~~~~~~~~~~G-~~~~G~t~ap~  229 (240)
                      +..+.+++.+.++||......  .+..|..-.|..    ++.....   +.. . .  ..+|++++.. +.|.|+-.|..
T Consensus       382 ~~~~~~~~~l~~~~g~~~~p~~~~~~~w~~a~p~~----~~g~~~~~~~~~~~l~~--~~~~l~~aG~~~~g~gv~~a~~  455 (470)
T 3i6d_A          382 DIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQY----HVGHKQRIKELREALAS--AYPGVYMTGASFEGVGIPDCID  455 (470)
T ss_dssp             HHHHHHHHHHGGGSCCCSCCSEEEEEEEEEEEEEC----BTTHHHHHHHHHHHHHH--HSTTEEECSTTTSCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEEEcCCccCCC----CCCHHHHHHHHHHHHHh--hCCCEEEEeecCCCCCHHHHHH
Confidence            667889999999998643222  245676654442    1111000   100 0 1  1468877655 67788888999


Q ss_pred             HHHHHHHHHh
Q 026314          230 IAEYVAAKFL  239 (240)
Q Consensus       230 ~g~~va~~i~  239 (240)
                      .|+.+|+.|+
T Consensus       456 sG~~aA~~i~  465 (470)
T 3i6d_A          456 QGKAAVSDAL  465 (470)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.98  E-value=0.00012  Score=66.80  Aligned_cols=65  Identities=14%  Similarity=0.254  Sum_probs=53.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIG   77 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~   77 (240)
                      .|.+.++++|++|+++++|++++..++    +++|++.++..            +.+++||.||.|.|.|+ .+.+++ +
T Consensus       125 ~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~------------~~~i~a~~vV~AdG~~S-~vR~~l-g  190 (535)
T 3ihg_A          125 ILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDG------------EYDLRAGYLVGADGNRS-LVRESL-G  190 (535)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTE------------EEEEEEEEEEECCCTTC-HHHHHT-T
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCC------------eEEEEeCEEEECCCCcc-hHHHHc-C
Confidence            477888899999999999999999888    88877765411            23799999999999998 888888 4


Q ss_pred             CCC
Q 026314           78 LDN   80 (240)
Q Consensus        78 ~~~   80 (240)
                      ++.
T Consensus       191 i~~  193 (535)
T 3ihg_A          191 IGR  193 (535)
T ss_dssp             CCE
T ss_pred             CCc
Confidence            443

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.90  E-value=8.6e-05  Score=66.46  Aligned_cols=192  Identities=7%  Similarity=0.016  Sum_probs=99.4

Q ss_pred             cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC---ccCCCcee
Q 026314           12 TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN---VFIPPAYY   88 (240)
Q Consensus        12 a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~---~~~p~~~~   88 (240)
                      ++|+++++|++|+..+++|.|+|++|                +++||+||+|+++|.-  .+.+...+.   .-++ ..+
T Consensus       249 ~~i~~~~~V~~i~~~~~~~~v~~~~g----------------~~~ad~vV~a~p~~~~--~~ll~~~~~~~~~~~~-~~~  309 (475)
T 3lov_A          249 SEIRLETPLLAISREDGRYRLKTDHG----------------PEYADYVLLTIPHPQV--VQLLPDAHLPELEQLT-THS  309 (475)
T ss_dssp             CEEESSCCCCEEEEETTEEEEECTTC----------------CEEESEEEECSCHHHH--HHHCTTSCCHHHHTCC-EEE
T ss_pred             CEEEcCCeeeEEEEeCCEEEEEECCC----------------eEECCEEEECCCHHHH--HHHcCccCHHHHhcCC-CCe
Confidence            69999999999999999999999887                7999999999998762  222311111   0011 122


Q ss_pred             eceeEEEEcCCCCCCccceeecCCCCCCC---eeEEE----ee--cCCcEE---EcCCccccCCcccccccccccccccc
Q 026314           89 ARGCYFSLANTKVAPFKHLIYPIPEDGGL---GVHVT----LD--LDGQIK---FGPDVEWIDGIDDTLSFLNRFDYSVN  156 (240)
Q Consensus        89 ~~g~~~~~~~~~~~~~~~~i~~~p~~~~~---~~~~~----~~--~~g~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~  156 (240)
                      +...++.++.+........-+-++.....   ++.+.    +.  .+..++   +|...   .         +.+....+
T Consensus       310 ~~~v~l~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~~~~~p~~~~l~~~~~~~~---~---------~~~~~~~~  377 (475)
T 3lov_A          310 TATVTMIFDQQQSLPIEGTGFVVNRRAPYSITACTAIDQKWNHSAPDHTVLRAFVGRPG---N---------DHLVHESD  377 (475)
T ss_dssp             EEEEEEEEECCSSCSSSSSEEEECTTSSCSEEEEEEHHHHCTTTCTTEEEEEEEECBTT---B---------CGGGGSCH
T ss_pred             EEEEEEEECCcCCCCCCCEEEEecCCCCCceEEEEEEcccCCCCCCCcEEEEEEeCCCC---C---------CcccCCCH
Confidence            55566666543211111100111111100   00000    00  000111   11110   0         01122234


Q ss_pred             hhhHHHHHHHHhhhCCCCCCCC---ccccccccCCeecCCCCCCCCeE---EecCCCCCCCCEEEEe-CCCCchHhhhHH
Q 026314          157 ANRAERFYPEIRKYYPDLRDGS---LQPSYAGIRPKLSGPRQSPIDFV---IQGDDTHGVPGLVNLF-GIESPGLTSSMA  229 (240)
Q Consensus       157 ~~~~~~~~~~~~~~~P~l~~~~---i~~~~aG~r~~~~~~~~~~~~~i---i~~~~~~~~~~~~~~~-G~~~~G~t~ap~  229 (240)
                      ++.++.+++.+.++|+.-. ..   .+..|..-.|..    +++..-.   +...-....+|++++. .+.+.|+..|..
T Consensus       378 e~~~~~~~~~L~~~~g~~~-~p~~~~v~~w~~a~p~~----~~g~~~~~~~~~~~l~~~~~~l~~aG~~~~g~g~~~a~~  452 (475)
T 3lov_A          378 EVLQQAVLQDLEKICGRTL-EPKQVIISRLMDGLPAY----TVGHADRIQRVREEVLAQYPGIYLAGLAYDGVGLPDCVA  452 (475)
T ss_dssp             HHHHHHHHHHHHHHHSSCC-CCSEEEEEEEEEEEECC----CTTHHHHHHHHHHHHHHHSTTEEECSTTTSCSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCC-CCeEEEEEEcccCCCCC----CCChHHHHHHHHHHHHhhCCCEEEEccCCCCCCHHHHHH
Confidence            5667888999999987432 22   244576654431    2221000   1110000246887664 467788999999


Q ss_pred             HHHHHHHHHh
Q 026314          230 IAEYVAAKFL  239 (240)
Q Consensus       230 ~g~~va~~i~  239 (240)
                      .|+.+|+.|+
T Consensus       453 sG~~aA~~i~  462 (475)
T 3lov_A          453 SAKTMIESIE  462 (475)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998875

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.90  E-value=3.2e-05  Score=69.19  Aligned_cols=60  Identities=20%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh----------HH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA----------PA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa----------~~   70 (240)
                      +|.+.+++.|++|+++++|++|...+++ +.|++++|.               +++||.||+|+|.|+          ..
T Consensus       139 ~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~---------------~i~Ad~VVlAtGg~s~~~~g~tG~g~~  203 (447)
T 2i0z_A          139 ALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGE---------------VLETNHVVIAVGGKSVPQTGSTGDGYA  203 (447)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCC---------------EEECSCEEECCCCSSSGGGSCSSHHHH
T ss_pred             HHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCC---------------EEECCEEEECCCCCcCCCCCCCcHHHH
Confidence            4678888999999999999999988887 678888772               599999999999999          67


Q ss_pred             HHHHhc
Q 026314           71 LAKRFI   76 (240)
Q Consensus        71 l~~~~~   76 (240)
                      +++.+|
T Consensus       204 la~~~G  209 (447)
T 2i0z_A          204 WAEKAG  209 (447)
T ss_dssp             HHHHTT
T ss_pred             HHHHCC
Confidence            888883

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.89  E-value=2.4e-05  Score=70.56  Aligned_cols=53  Identities=15%  Similarity=0.171  Sum_probs=45.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|++.++++|++|+++++|++|+.++++++ |++++|+               ++.||.||.+++++..
T Consensus       226 aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~---------------~~~ad~VV~~a~~~~~  279 (501)
T 4dgk_A          226 GMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGR---------------RFLTQAVASNADVVHT  279 (501)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSC---------------EEECSCEEECCC----
T ss_pred             HHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCc---------------EEEcCEEEECCCHHHH
Confidence            578889999999999999999999999987 9998884               7999999999998753

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.79  E-value=3.3e-05  Score=68.32  Aligned_cols=58  Identities=12%  Similarity=0.103  Sum_probs=50.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe----CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh---------
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE----GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA---------   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~----~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa---------   68 (240)
                      +|.+.++++|++|+++++|++|...    +++|.|+++++                +++||.||+|+|.|+         
T Consensus       114 ~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g----------------~i~ad~VVlAtG~~s~p~~g~~G~  177 (401)
T 2gqf_A          114 MLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST----------------QWQCKNLIVATGGLSMPGLGATPF  177 (401)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE----------------EEEESEEEECCCCSSCGGGTCCSH
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC----------------EEECCEEEECCCCccCCCCCCChH
Confidence            4677888899999999999999876    56788888766                799999999999998         


Q ss_pred             -HHHHHHh
Q 026314           69 -PALAKRF   75 (240)
Q Consensus        69 -~~l~~~~   75 (240)
                       ..+++.+
T Consensus       178 g~~la~~~  185 (401)
T 2gqf_A          178 GYQIAEQF  185 (401)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHC
Confidence             5678877

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.79  E-value=0.00013  Score=67.05  Aligned_cols=58  Identities=16%  Similarity=0.232  Sum_probs=47.1

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++. |++++++ +|++++..+++  +.|++++|.               +++||.||.|+|.|+..+.+++
T Consensus       199 ~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~---------------~i~ad~vI~A~G~~S~~~~~~l  259 (550)
T 2e4g_A          199 FLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGR---------------VFDADLFVDCSGFRGLLINKAM  259 (550)
T ss_dssp             HHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSC---------------EEECSEEEECCGGGCCCCCCCT
T ss_pred             HHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCC---------------EEECCEEEECCCCchhhHHHHh
Confidence            467788888 9999999 99999876543  468887772               6999999999999997656555

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.75  E-value=0.00046  Score=63.92  Aligned_cols=62  Identities=13%  Similarity=0.210  Sum_probs=44.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecC------CcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISE------SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~------g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.|+++|++|+++++|+++...+ +.+. |++.+      |....      .-.+..+++||.||.|.|.++.
T Consensus       149 ~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~------~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          149 WMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKT------TFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             HHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEE------EEECCCEEECSEEEECCCTTCH
T ss_pred             HHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCccc------ccCCceEEECCEEEEeeCCCch
Confidence            57888999999999999999998876 4454 77753      20000      0000127999999999999985

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.69  E-value=2.8e-05  Score=69.75  Aligned_cols=54  Identities=13%  Similarity=0.001  Sum_probs=45.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe--CCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE--GNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL   71 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~--~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l   71 (240)
                      +|++.++++|++|+++++|++|...  ++++ .|+++ |+               ++.||.||+|+|+|+.++
T Consensus       247 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~-g~---------------~~~ad~VV~a~~~~~~~l  303 (453)
T 2bcg_G          247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-LG---------------TFKAPLVIADPTYFPEKC  303 (453)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-TE---------------EEECSCEEECGGGCGGGE
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC-Ce---------------EEECCEEEECCCccchhh
Confidence            6788899999999999999999988  7776 47775 42               799999999999997644

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.63  E-value=0.00037  Score=61.11  Aligned_cols=52  Identities=8%  Similarity=0.101  Sum_probs=44.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      .|.+.+++  ++|+++++|++++..+++|+|++.+|.               +++||.||.|.|.++.-
T Consensus       132 ~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~a~~vV~AdG~~S~v  183 (407)
T 3rp8_A          132 EMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGS---------------SASGDLLIAADGSHSAL  183 (407)
T ss_dssp             HHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCCTTCSS
T ss_pred             HHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCC---------------EEeeCEEEECCCcChHH
Confidence            35556655  899999999999999999999998873               79999999999998754

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.61  E-value=0.00019  Score=62.68  Aligned_cols=58  Identities=16%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEeCCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLEGNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.++++ |++|+++++|++++..+++|  .|++++|.               +++||.||.|.|.|+. +.+.+
T Consensus       112 ~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~---------------~~~ad~vV~AdG~~s~-vr~~l  172 (399)
T 2x3n_A          112 LVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGR---------------VLRPRVVVGADGIASY-VRRRL  172 (399)
T ss_dssp             HHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSC---------------EEEEEEEEECCCTTCH-HHHHT
T ss_pred             HHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCC---------------EEECCEEEECCCCChH-HHHHh
Confidence            466778887 99999999999999888888  88887773               7999999999999997 77777

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.56  E-value=0.00017  Score=55.84  Aligned_cols=55  Identities=15%  Similarity=0.130  Sum_probs=46.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +.+.++++|++++++ +|++++..++++.|++++|                +++||.||+|+|.++. +.+.+
T Consensus        62 l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g----------------~i~ad~vI~A~G~~~~-~~~~~  116 (180)
T 2ywl_A           62 LEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG----------------VEKAERLLLCTHKDPT-LPSLL  116 (180)
T ss_dssp             HHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC----------------EEEEEEEEECCTTCCH-HHHHH
T ss_pred             HHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC----------------EEEECEEEECCCCCCC-ccccC
Confidence            556778899999999 9999998777788888777                7999999999999974 66666

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.53  E-value=0.00022  Score=65.65  Aligned_cols=57  Identities=21%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      +|.+.++++|++|+++++|++|+..++++. |++++|.               +++||.||+|+|.|+....+
T Consensus       225 ~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~---------------~i~Ad~VVlA~G~~s~~~~~  282 (549)
T 3nlc_A          225 KMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGE---------------EIKSRHVVLAVGHSARDTFE  282 (549)
T ss_dssp             HHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSC---------------EEECSCEEECCCTTCHHHHH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCC---------------EEECCEEEECCCCChhhHHH
Confidence            466778889999999999999998877654 8888773               69999999999999974433

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.48  E-value=5.2e-05  Score=67.58  Aligned_cols=54  Identities=15%  Similarity=0.013  Sum_probs=45.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL   71 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l   71 (240)
                      +|++.++++|++|+++++|++|...++++. |++ +|+               +++||.||+|+|.|+..+
T Consensus       239 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~---------------~~~ad~VV~a~~~~~~~~  293 (433)
T 1d5t_A          239 GFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGE---------------VARCKQLICDPSYVPDRV  293 (433)
T ss_dssp             HHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTE---------------EEECSEEEECGGGCGGGE
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCe---------------EEECCEEEECCCCCcccc
Confidence            577888899999999999999999888876 665 442               799999999999998643

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.48  E-value=0.00011  Score=66.52  Aligned_cols=52  Identities=15%  Similarity=0.106  Sum_probs=43.3

Q ss_pred             ChhhHHHHHCCcEEEcCceEEEEEE-eCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            1 MWVQGEAENHGTTFSNNTSVIGGHL-EGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         1 ~al~~~A~~~Ga~i~~~~~V~~i~~-~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++|++.++++|++|+++++|++|.. +++++ .|++++|+               +++||.||+++|.+
T Consensus       260 ~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~---------------~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          260 EGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGE---------------IAYCDKVICDPSYV  313 (475)
T ss_dssp             HHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSC---------------EEEEEEEEECGGGC
T ss_pred             HHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCc---------------EEECCEEEECCCcc
Confidence            3688999999999999999999998 56665 59998873               69999999999988

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.44  E-value=0.00022  Score=64.85  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=43.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~wa~   69 (240)
                      +|.+.++++|++|+++++|++|..+ ++++. |.+.++            +++.+|.|+ .||+|+|.|+.
T Consensus       207 ~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~------------g~~~~i~A~k~VVlAtGG~~~  265 (510)
T 4at0_A          207 PLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQY------------GKEVAVRARRGVVLATGSFAY  265 (510)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEET------------TEEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEEC------------CcEEEEEeCCeEEEeCCChhh
Confidence            4678889999999999999999987 56554 555433            124469995 99999999983

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.40  E-value=0.00026  Score=60.15  Aligned_cols=51  Identities=10%  Similarity=0.048  Sum_probs=45.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.+++.|++++++++|+++...++.|. |+++++                ++++|.||+|+|.|+.
T Consensus        82 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g----------------~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           82 LAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR----------------QWLARAVISATGTWGE  133 (357)
T ss_dssp             HHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC----------------EEEEEEEEECCCSGGG
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC----------------EEEeCEEEECCCCCCC
Confidence            45677888999999999999999999999 999877                8999999999999874

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.40  E-value=0.00011  Score=65.63  Aligned_cols=52  Identities=17%  Similarity=0.203  Sum_probs=44.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|++.++++|++|+++++|++|+..+++ |.|+++++                +++||.||+|+++|..
T Consensus       239 ~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~----------------~~~ad~vv~a~p~~~~  291 (477)
T 3nks_A          239 ALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS----------------SLEADHVISAIPASVL  291 (477)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSC----------------EEEESEEEECSCHHHH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCe----------------EEEcCEEEECCCHHHH
Confidence            4667778889999999999999988776 88988655                7999999999998753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.30  E-value=0.00079  Score=56.37  Aligned_cols=77  Identities=14%  Similarity=0.098  Sum_probs=51.3

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCeE-EEEec---------CCcccccCCCCCCCCCceeEecCEEEEcCC-----
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYIS---------ESKNLRNWDGVSPLQPELTLIPKLVVNSAG-----   65 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~-~V~t~---------~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG-----   65 (240)
                      +|.+.+.+ .|++++++++|+++..+++++ .|.+.         ++          ..++..+++||.||+|+|     
T Consensus       124 ~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g----------~~g~~~~i~ad~VV~AtG~~s~~  193 (284)
T 1rp0_A          124 TIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQ----------SCMDPNVMEAKIVVSSCGHDGPF  193 (284)
T ss_dssp             HHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTS----------SCCCCEEEEEEEEEECCCSSSTT
T ss_pred             HHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcc----------ccCceEEEECCEEEECCCCchHH
Confidence            35566655 699999999999999888765 35442         11          012234799999999999     


Q ss_pred             -CChHHHHHHhcCCCCccCCCceeeceeE
Q 026314           66 -LSAPALAKRFIGLDNVFIPPAYYARGCY   93 (240)
Q Consensus        66 -~wa~~l~~~~~~~~~~~~p~~~~~~g~~   93 (240)
                       .|+.+++..+ +...++.|    .+|.+
T Consensus       194 ~~~~~~~~~~~-g~~~~v~~----~~g~~  217 (284)
T 1rp0_A          194 GATGVKRLKSI-GMIDHVPG----MKALD  217 (284)
T ss_dssp             TTHHHHHHHHT-TSSSCCCC----CEEEC
T ss_pred             HHHHHHHhhhc-cCCCCcCC----cCCch
Confidence             5555655544 33445555    67643

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.23  E-value=0.00042  Score=62.30  Aligned_cols=52  Identities=19%  Similarity=0.171  Sum_probs=44.8

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|++.++++| ++|+++++|++|+..++++.|++++|.               +++||+||+|+|++.
T Consensus       260 ~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          260 RFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGR---------------EFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCC---------------EEEEEEEEECCCGGG
T ss_pred             HHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCC---------------EEEcCEEEECCCHHH
Confidence            4667777788 999999999999988888999988773               699999999999865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.22  E-value=0.00058  Score=58.64  Aligned_cols=50  Identities=14%  Similarity=0.070  Sum_probs=43.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.++++|++++++++|+++...++.|.|++.++                ++.+|.||+|+|.++
T Consensus        94 l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g----------------~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           94 LQVVANHYELNIFENTVVTNISADDAYYTIATTTE----------------TYHADYIFVATGDYN  143 (369)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC----------------CEEEEEEEECCCSTT
T ss_pred             HHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC----------------EEEeCEEEECCCCCC
Confidence            34567788999999999999998877899988776                699999999999986

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.14  E-value=0.0011  Score=60.11  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=46.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++|+++++|+++...++++. |+  +.+|             ++.+++||.||.|+|.++. +.+.+
T Consensus       116 ~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG-------------~~~~i~ad~VI~AdG~~S~-vr~~l  178 (512)
T 3e1t_A          116 MLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEG-------------VELMAHARFIVDASGNRTR-VSQAV  178 (512)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSS-------------CEEEEEEEEEEECCCTTCS-SGGGT
T ss_pred             HHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCC-------------CEEEEEcCEEEECCCcchH-HHHHc
Confidence            467788889999999999999999888653 44  4344             2347999999999999883 44444

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.14  E-value=0.00092  Score=54.19  Aligned_cols=52  Identities=23%  Similarity=0.089  Sum_probs=42.5

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      |.+.++++ |++++ +++|+++...++++ .|++++|.               +++||.||+|+|.|+..
T Consensus        74 l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~---------------~i~a~~VV~A~G~~s~~  127 (232)
T 2cul_A           74 AKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGP---------------PARGEKVVLAVGSFLGA  127 (232)
T ss_dssp             HHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSC---------------CEECSEEEECCTTCSSC
T ss_pred             HHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCC---------------EEECCEEEECCCCChhh
Confidence            55677776 99999 57999999888875 58887763               69999999999998754

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.13  E-value=0.00086  Score=61.76  Aligned_cols=55  Identities=13%  Similarity=0.034  Sum_probs=43.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++|+++++|++|...+ +++. |++.  +|             ++.+|.||.||+|+|.|+.
T Consensus       260 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-------------~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          260 VLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYK-------------GYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTT-------------EEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCC-------------cEEEEECCeEEEeCCCccc
Confidence            47788899999999999999999876 6543 4443  34             2346999999999999985

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.12  E-value=0.00073  Score=62.22  Aligned_cols=55  Identities=15%  Similarity=0.094  Sum_probs=44.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++|++|...+ +++. |++.  +|             ++.+|+||.||+|+|.|+.
T Consensus       255 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g-------------~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          255 TLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHT-------------GYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             HHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTT-------------EEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCC-------------cEEEEEcCEEEEecCCccc
Confidence            46788899999999999999999887 7653 5443  44             2346999999999999985

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.06  E-value=0.0011  Score=57.75  Aligned_cols=58  Identities=24%  Similarity=0.285  Sum_probs=48.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+..++++.|++++|.               +++||.||+|+|.+.+. +++.+
T Consensus       193 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~---------------~i~~d~vv~a~G~~p~~~l~~~~  251 (384)
T 2v3a_A          193 VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGE---------------VIPCDLVVSAVGLRPRTELAFAA  251 (384)
T ss_dssp             HHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCC---------------EEECCEEEECcCCCcCHHHHHHC
Confidence            456677889999999999999988888888887773               79999999999998764 77766

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.04  E-value=0.0012  Score=60.86  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=42.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.++++|++|+++++|++|...+ +++. |.+.  +|             ++.+|.||.||+|+|.|+.
T Consensus       260 ~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G-------------~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          260 VLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYT-------------GYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTT-------------EEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCC-------------cEEEEEcCEEEEeCCCCcc
Confidence            47788899999999999999998776 6543 5443  34             2346999999999999984

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.98  E-value=0.0018  Score=56.86  Aligned_cols=58  Identities=21%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+..++++. |++++|.               ++.||.||+|+|...+. +++.+
T Consensus       190 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~---------------~i~aD~Vv~a~G~~p~~~l~~~~  249 (404)
T 3fg2_P          190 FHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGN---------------TLPCDLVVVGVGVIPNVEIAAAA  249 (404)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSC---------------EEECSEEEECCCEEECCHHHHHT
T ss_pred             HHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCC---------------EEEcCEEEECcCCccCHHHHHhC
Confidence            55677889999999999999998877764 8888873               79999999999998764 77766

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.94  E-value=0.002  Score=57.69  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+.++++|++|+++++|++|+..+++++|++++|.               +++||.||+|+|.+.+ .+++.+
T Consensus       208 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~i~aD~Vv~a~G~~p~~~l~~~~  266 (472)
T 3iwa_A          208 LRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKR---------------TLDADLVILAAGVSPNTQLARDA  266 (472)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSC---------------EEECSEEEECSCEEECCHHHHHH
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCC---------------EEEcCEEEECCCCCcCHHHHHhC
Confidence            556778899999999999999887777877777763               7999999999999865 576666

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.92  E-value=0.0021  Score=56.61  Aligned_cols=58  Identities=14%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+..++++ .|++++|.               ++.||.||+|+|.+.+. +++.+
T Consensus       200 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~---------------~i~aD~Vv~a~G~~p~~~l~~~~  259 (415)
T 3lxd_A          200 YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGS---------------VIPADIVIVGIGIVPCVGALISA  259 (415)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSC---------------EEECSEEEECSCCEESCHHHHHT
T ss_pred             HHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCC---------------EEEcCEEEECCCCccChHHHHhC
Confidence            5567788999999999999999877776 48888773               79999999999998763 66666

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=96.90  E-value=0.00086  Score=59.02  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +++.| +|+++++|++|+..+++++|++++|.               +++||+||+|+|+..
T Consensus       214 ~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~vi~a~~~~~  259 (431)
T 3k7m_X          214 SQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGH---------------AFQAHSVIVATPMNT  259 (431)
T ss_dssp             HTTCS-CEESSCCEEEEECSSSSEEEEETTSC---------------CEEEEEEEECSCGGG
T ss_pred             HhhCC-ceEeCCEEEEEEEcCCeEEEEECCCC---------------EEEeCEEEEecCcch
Confidence            45567 99999999999988888999998872               599999999999643

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=96.87  E-value=0.0021  Score=55.68  Aligned_cols=55  Identities=15%  Similarity=0.250  Sum_probs=45.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++.|++|+++++|++++. ++  .|++++|.               +++||.||.|.|.++. +.+++
T Consensus       112 ~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~---------------~~~ad~vV~AdG~~s~-vr~~l  166 (379)
T 3alj_A          112 ALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGE---------------VLEADLIVGADGVGSK-VRDSI  166 (379)
T ss_dssp             HHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSC---------------EEECSEEEECCCTTCH-HHHHH
T ss_pred             HHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCC---------------EEEcCEEEECCCccHH-HHHHh
Confidence            467788889999999999999987 44  77887763               7999999999999885 66666

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.85  E-value=0.0028  Score=59.20  Aligned_cols=69  Identities=12%  Similarity=0.118  Sum_probs=49.2

Q ss_pred             hhhHHHHHCCc--EEEcCceEEEEEEeCC----eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGT--TFSNNTSVIGGHLEGN----CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga--~i~~~~~V~~i~~~~~----~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.++++|+  +|+++++|++++..++    +++|++.+...       ...|.+.+++||.||.|.|.+|. +.+++
T Consensus       146 ~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~-------~~~G~~~~i~a~~vVgADG~~S~-vR~~l  217 (639)
T 2dkh_A          146 HYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDA-------AHAGQIETVQARYVVGCDGARSN-VRRAI  217 (639)
T ss_dssp             HHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSG-------GGTTCEEEEEEEEEEECCCTTCH-HHHHT
T ss_pred             HHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccc-------cCCCCeEEEEeCEEEECCCcchH-HHHHh
Confidence            46788899998  9999999999988753    57766542000       00012347999999999999986 77777


Q ss_pred             cCCC
Q 026314           76 IGLD   79 (240)
Q Consensus        76 ~~~~   79 (240)
                       +.+
T Consensus       218 -g~~  220 (639)
T 2dkh_A          218 -GRQ  220 (639)
T ss_dssp             -TCC
T ss_pred             -CCC
Confidence             444

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.81  E-value=0.0025  Score=59.00  Aligned_cols=56  Identities=7%  Similarity=-0.048  Sum_probs=43.3

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe-CCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE-GNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~-~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +|.+.++++|++|+++++|+++..+ ++++. |..   .+|             +...+.|+.||+|+|.|+..
T Consensus       148 ~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g-------------~~~~i~A~~VVlAtGg~~~~  208 (588)
T 2wdq_A          148 TLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETG-------------EVVYFKARATVLATGGAGRI  208 (588)
T ss_dssp             HHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTC-------------CEEEEEEEEEEECCCCCGGG
T ss_pred             HHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCC-------------eEEEEEcCEEEECCCCCccc
Confidence            4778888999999999999999885 55543 443   233             34469999999999998853

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=96.79  E-value=0.0021  Score=55.88  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=46.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+.+.|++|+++++|++++..+ +.+.|++ ++|.             +.+++||.||.|.|.++. +.+.+
T Consensus       108 ~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~-------------~~~~~a~~vV~AdG~~S~-vr~~l  169 (394)
T 1k0i_A          108 DLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGE-------------RLRLDCDYIAGCDGFHGI-SRQSI  169 (394)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTE-------------EEEEECSEEEECCCTTCS-TGGGS
T ss_pred             HHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCc-------------EEEEEeCEEEECCCCCcH-HHHhc
Confidence            46677888899999999999998764 4577776 5551             235999999999999987 55555

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.78  E-value=0.0052  Score=56.28  Aligned_cols=64  Identities=13%  Similarity=0.223  Sum_probs=47.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      |.+.+++.   |+++++|++++..+++|+|++.+..          .|++.+++||.||.|.|.++. +.+.+ +.+..
T Consensus       144 L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~----------~G~~~~i~a~~vVgADG~~S~-vR~~l-g~~~~  207 (549)
T 2r0c_A          144 LAEAVGER---LRTRSRLDSFEQRDDHVRATITDLR----------TGATRAVHARYLVACDGASSP-TRKAL-GIDAP  207 (549)
T ss_dssp             HHHHHGGG---EECSEEEEEEEECSSCEEEEEEETT----------TCCEEEEEEEEEEECCCTTCH-HHHHH-TCCCC
T ss_pred             HHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECC----------CCCEEEEEeCEEEECCCCCcH-HHHHc-CCCCC
Confidence            55666665   9999999999988888887765410          122347999999999999987 77777 44433

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.77  E-value=0.0019  Score=58.41  Aligned_cols=53  Identities=11%  Similarity=0.146  Sum_probs=44.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+.++++|++|+++++|++|+..++++.|++.+|.               +++||.||+|+|.+.+.
T Consensus       229 l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~aD~Vv~a~G~~p~~  281 (499)
T 1xdi_A          229 LEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGR---------------TVEGSHALMTIGSVPNT  281 (499)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSC---------------EEEESEEEECCCEEECC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCc---------------EEEcCEEEECCCCCcCC
Confidence            556778899999999999999987777888776663               79999999999998764

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=96.75  E-value=0.0021  Score=54.84  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=38.8

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +++.|++|+++++|++|++.+++|+|++++|.               +++||.||+|+.+
T Consensus       119 ~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~---------------~~~ad~vV~A~p~  163 (342)
T 3qj4_A          119 LKESGAEVYFRHRVTQINLRDDKWEVSKQTGS---------------PEQFDLIVLTMPV  163 (342)
T ss_dssp             HHHHTCEEESSCCEEEEEECSSSEEEEESSSC---------------CEEESEEEECSCH
T ss_pred             HHhcCCEEEeCCEEEEEEEcCCEEEEEECCCC---------------EEEcCEEEECCCH
Confidence            34459999999999999998889999998772               5899999999974

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=96.75  E-value=0.0032  Score=59.12  Aligned_cols=55  Identities=11%  Similarity=0.061  Sum_probs=43.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++|+++++|+++...++++. |.+   .+|             +...+.|+.||+|+|.|+.
T Consensus       163 ~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G-------------~~~~i~A~~VVlATGG~~~  221 (660)
T 2bs2_A          163 AVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTG-------------DIIAYVAKGTLIATGGYGR  221 (660)
T ss_dssp             HHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTC-------------CEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCC-------------cEEEEEcCEEEEccCcchh
Confidence            467788889999999999999988777553 443   334             2346999999999999983

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.74  E-value=0.003  Score=58.96  Aligned_cols=58  Identities=12%  Similarity=-0.058  Sum_probs=43.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++|+++..+++++. |.+.+..          .|+...+.|+.||+|+|.|+.
T Consensus       160 ~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~----------~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          160 TLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIE----------DGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETT----------TCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcC----------CCcEEEEEcCeEEECCCcccc
Confidence            467778889999999999999998877653 5442100          123446999999999999985

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=96.74  E-value=0.0023  Score=57.30  Aligned_cols=51  Identities=10%  Similarity=0.049  Sum_probs=44.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..++.+.|+++++                +++||.||+|+|.+.+
T Consensus       222 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~~----------------~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          222 VTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHG----------------ELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHHHTTCEEETTCCEEEEEEETTEEEEEETTE----------------EEEESEEEECSCEEES
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECCc----------------EEEcCEEEECCCCCcC
Confidence            56677889999999999999998777777888654                7999999999999876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=96.70  E-value=0.0027  Score=57.85  Aligned_cols=60  Identities=15%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe----EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH--HHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC----MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA--LAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~----~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~--l~~~~   75 (240)
                      .+.+..+++|++|+++++|++|+..+++    +.|++++|.              .+++||.||+|+|.+.+.  +++.+
T Consensus       260 ~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~--------------~~i~aD~Vv~A~G~~p~~~~~l~~~  325 (523)
T 1mo9_A          260 YVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE--------------MRIETDFVFLGLGEQPRSAELAKIL  325 (523)
T ss_dssp             HHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEE--------------EEEECSCEEECCCCEECCHHHHHHH
T ss_pred             HHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCc--------------EEEEcCEEEECcCCccCCccCHHHc
Confidence            3566778899999999999999876554    678887661              259999999999999875  56666

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.68  E-value=0.0024  Score=58.20  Aligned_cols=58  Identities=17%  Similarity=0.297  Sum_probs=46.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++.|++++++ +|+++...+++  +.|++++|.               +++||.||.|+|.|+..+.+++
T Consensus       170 ~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~---------------~i~ad~vV~A~G~~s~~~~~~l  229 (538)
T 2aqj_A          170 FLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGR---------------TLEADLFIDCSGMRGLLINQAL  229 (538)
T ss_dssp             HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSC---------------EECCSEEEECCGGGCCCCCCCT
T ss_pred             HHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCc---------------EEEeCEEEECCCCchhhHHHHh
Confidence            4677888899999999 89999876543  468887762               6999999999999987655555

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.56  E-value=0.004  Score=56.02  Aligned_cols=53  Identities=17%  Similarity=0.268  Sum_probs=45.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+.++++|++|+++++|++|+..++++.|++++|.               +++||.||+|+|...+.
T Consensus       238 l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~aD~Vi~A~G~~p~~  290 (484)
T 3o0h_A          238 LNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQ---------------TICADRVMLATGRVPNT  290 (484)
T ss_dssp             HHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSC---------------EEEESEEEECCCEEECC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCc---------------EEEcCEEEEeeCCCcCC
Confidence            556778899999999999999988788888888773               79999999999986543

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.55  E-value=0.0036  Score=56.74  Aligned_cols=64  Identities=17%  Similarity=0.036  Sum_probs=46.6

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeC-C-eEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHH
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEG-N-CMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKR   74 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~-~-~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~   74 (240)
                      ++.+.|+++| ++|+++++|++|..++ + ++. |+..  +|.          .+++.++.|+.||+|||++ +.+|+..
T Consensus       226 ~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~----------~~~~~~v~A~~VIlaaG~~~s~~lL~~  295 (504)
T 1n4w_A          226 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGK----------LLATKEISCRYLFLGAGSLGSTELLVR  295 (504)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCC----------EEEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCc----------cceeEEEeeCEEEEccCCCCCHHHHHh
Confidence            4677788886 9999999999999875 3 443 6653  230          0124579999999999998 6677665


Q ss_pred             h
Q 026314           75 F   75 (240)
Q Consensus        75 ~   75 (240)
                      .
T Consensus       296 S  296 (504)
T 1n4w_A          296 A  296 (504)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.55  E-value=0.0044  Score=56.80  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=43.7

Q ss_pred             hhHHHHHCCc--EEEcCceEEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGT--TFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga--~i~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|.  .++++++|+++...++  .|.|++++|.               +++||.||+|+|.++
T Consensus        93 l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~---------------~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           93 LEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGE---------------VYRAKYVVNAVGLLS  147 (540)
T ss_dssp             HHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSC---------------EEEEEEEEECCCSCC
T ss_pred             HHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCC---------------EEEeCEEEECCcccc
Confidence            4556788898  8999999999988765  8999998873               699999999999876

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.54  E-value=0.0038  Score=55.62  Aligned_cols=53  Identities=15%  Similarity=0.115  Sum_probs=44.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++++++++|++++..++++.|+++++.               ++++|.||+|+|.+.+.
T Consensus       214 l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~i~~D~vv~A~G~~p~~  266 (455)
T 2yqu_A          214 AERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGE---------------VLEADRVLVAVGRRPYT  266 (455)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECSCEEECC
T ss_pred             HHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCe---------------EEEcCEEEECcCCCcCC
Confidence            556677889999999999999988888888876662               79999999999988754

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=96.54  E-value=0.0052  Score=51.89  Aligned_cols=51  Identities=20%  Similarity=0.232  Sum_probs=43.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.+++|+.+...++.|.|+++++.               ++++|.||+|+|..+
T Consensus        71 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           71 LVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGN---------------AYTAKAVIIAAGVGA  121 (335)
T ss_dssp             HHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTSC---------------EEEEEEEEECCTTSE
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCCC---------------EEEeCEEEECCCCCC
Confidence            456677789999999999999988888889887763               699999999999853

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=96.53  E-value=0.004  Score=54.76  Aligned_cols=58  Identities=21%  Similarity=0.304  Sum_probs=47.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+..+....|++++|.               +++||.||+|+|...+ .+++.+
T Consensus       191 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~---------------~i~aD~Vv~a~G~~p~~~l~~~~  249 (410)
T 3ef6_A          191 LRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGR---------------SFVADSALICVGAEPADQLARQA  249 (410)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSC---------------EEECSEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCC---------------EEEcCEEEEeeCCeecHHHHHhC
Confidence            456678889999999999999876544468887773               7999999999999876 477766

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.53  E-value=0.0038  Score=56.69  Aligned_cols=64  Identities=13%  Similarity=0.023  Sum_probs=46.9

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeC-C-eEE-EEecC--CcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHH
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEG-N-CMN-VYISE--SKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKR   74 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~-~-~~~-V~t~~--g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~   74 (240)
                      ++...|+++| ++|+++++|++|..++ + ++. |+..+  |.          .+++.+++|+.||+|||++ +.+|+..
T Consensus       231 ~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~----------~~~~~~~~A~~VIlaaGa~~sp~lL~~  300 (507)
T 1coy_A          231 TYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGN----------VVATKVVTADRVFFAAGSVGTSKLLVS  300 (507)
T ss_dssp             THHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSC----------EEEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCc----------ccccEEEEeCEEEEccCccCCHHHHHh
Confidence            5677788886 9999999999999876 3 443 66532  30          0124579999999999998 7777665


Q ss_pred             h
Q 026314           75 F   75 (240)
Q Consensus        75 ~   75 (240)
                      .
T Consensus       301 S  301 (507)
T 1coy_A          301 M  301 (507)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.52  E-value=0.0035  Score=55.69  Aligned_cols=56  Identities=14%  Similarity=-0.099  Sum_probs=42.6

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCC-ceeEecCEEEEcCCCChH
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQP-ELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~-~~~i~a~~VV~aaG~wa~   69 (240)
                      .+.+++.+..++++++|++++..+++|.|++.+..          .|+ +.++++|.||+|+|.++.
T Consensus       122 ~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~----------~G~~~~~~~~d~VVvAtG~~s~  178 (447)
T 2gv8_A          122 RIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTK----------AGSPISKDIFDAVSICNGHYEV  178 (447)
T ss_dssp             HHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESS----------TTCCEEEEEESEEEECCCSSSS
T ss_pred             HHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecC----------CCCeeEEEEeCEEEECCCCCCC
Confidence            44556668889999999999998888998876510          011 236899999999999763

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=96.52  E-value=0.0015  Score=58.45  Aligned_cols=43  Identities=16%  Similarity=0.106  Sum_probs=38.4

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |++|+++++|++|+..+++++|++.+|.               +++||+||+|++++.
T Consensus       228 ~~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~vI~a~~~~~  270 (472)
T 1b37_A          228 DPRLQLNKVVREIKYSPGGVTVKTEDNS---------------VYSADYVMVSASLGV  270 (472)
T ss_dssp             CTTEESSCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECSCHHH
T ss_pred             ccEEEcCCEEEEEEEcCCcEEEEECCCC---------------EEEcCEEEEecCHHH
Confidence            7899999999999998888999998873               799999999999754

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.50  E-value=0.0024  Score=58.59  Aligned_cols=63  Identities=17%  Similarity=0.070  Sum_probs=45.4

Q ss_pred             hhHHHH-HCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCC-ChHHHHHHh
Q 026314            3 VQGEAE-NHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGL-SAPALAKRF   75 (240)
Q Consensus         3 l~~~A~-~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~-wa~~l~~~~   75 (240)
                      +...|. +.|++|++++.|+.|..++ +++. |+..+..          .|+.+++.|+ .||+|||+ |+.+|+.+.
T Consensus       214 ~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~----------~g~~~~i~A~k~VIlaaG~~~sp~lL~~S  281 (546)
T 2jbv_A          214 YIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSA----------FGHTHRLTARNEVVLSTGAIDTPKLLMLS  281 (546)
T ss_dssp             HTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESST----------TSCEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             HHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECC----------CCcEEEEEeCccEEEecCccCCchhhhhc
Confidence            344444 5699999999999999877 6553 6553320          1235579998 99999999 588887765

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=96.49  E-value=0.0026  Score=56.32  Aligned_cols=47  Identities=13%  Similarity=-0.033  Sum_probs=39.7

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+++.|++|+++++|++|+..+++ |.|+++.+                +++||+||+|++++.
T Consensus       221 l~~~lg~~i~~~~~V~~i~~~~~~~v~v~~~~~----------------~~~ad~VI~a~p~~~  268 (453)
T 2yg5_A          221 MAEALGDDVFLNAPVRTVKWNESGATVLADGDI----------------RVEASRVILAVPPNL  268 (453)
T ss_dssp             HHHHHGGGEECSCCEEEEEEETTEEEEEETTTE----------------EEEEEEEEECSCGGG
T ss_pred             HHHhcCCcEEcCCceEEEEEeCCceEEEEECCe----------------EEEcCEEEEcCCHHH
Confidence            345568999999999999999888 88887433                799999999999874

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=96.46  E-value=0.0039  Score=56.70  Aligned_cols=58  Identities=10%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.|++ .|++++++ +|++++..+++  +.|++++|.               +++||.||.|.|.|+..+.+++
T Consensus       180 ~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~---------------~i~ad~vV~AdG~~S~~~~~~l  240 (526)
T 2pyx_A          180 LLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNG---------------EISGQLFIDCTGAKSLLLGEHL  240 (526)
T ss_dssp             HHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSC---------------EEECSEEEECSGGGCCCCCCCT
T ss_pred             HHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCC---------------EEEcCEEEECCCcchHHHHHHh
Confidence            46678888 89999999 69999876543  357777652               6999999999999986555555

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=96.39  E-value=0.0035  Score=56.74  Aligned_cols=47  Identities=13%  Similarity=0.005  Sum_probs=40.9

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +++.|++|+++++|++|+..+++|.|++.+|.               +++||+||+|++++.
T Consensus       222 ~~~lg~~i~~~~~V~~i~~~~~~v~v~~~~g~---------------~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          222 MDLLGDRVKLERPVIYIDQTRENVLVETLNHE---------------MYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHGGGEESSCCEEEEECSSSSEEEEETTSC---------------EEEESEEEECSCGGG
T ss_pred             HHHcCCcEEcCCeeEEEEECCCeEEEEECCCe---------------EEEeCEEEECCCHHH
Confidence            44559999999999999988888999888773               799999999999876

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=96.39  E-value=0.006  Score=53.18  Aligned_cols=50  Identities=12%  Similarity=0.258  Sum_probs=43.1

Q ss_pred             CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314           10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|++|+++++|++++..+++|.|++.+|.               +++||.||.|.|.++. +.+.+
T Consensus       110 ~~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~-vr~~~  159 (397)
T 2vou_A          110 GPERYHTSKCLVGLSQDSETVQMRFSDGT---------------KAEANWVIGADGGASV-VRKRL  159 (397)
T ss_dssp             CSTTEETTCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECCCTTCH-HHHHH
T ss_pred             CCcEEEcCCEEEEEEecCCEEEEEECCCC---------------EEECCEEEECCCcchh-HHHHh
Confidence            48999999999999988888999988773               7999999999999874 55555

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=96.39  E-value=0.0029  Score=55.52  Aligned_cols=46  Identities=9%  Similarity=0.027  Sum_probs=39.9

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +++.+.+|+++++|++|++.++++.|++++|                +++||.||+|++++.
T Consensus       213 ~~~l~~~v~~~~~V~~i~~~~~~v~v~~~~g----------------~~~ad~Vv~a~~~~~  258 (424)
T 2b9w_A          213 NATLEHPAERNVDITRITREDGKVHIHTTDW----------------DRESDVLVLTVPLEK  258 (424)
T ss_dssp             HHHSSSCCBCSCCEEEEECCTTCEEEEESSC----------------EEEESEEEECSCHHH
T ss_pred             HHhhcceEEcCCEEEEEEEECCEEEEEECCC----------------eEEcCEEEECCCHHH
Confidence            4556778999999999999888899999887                799999999999863

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.38  E-value=0.0059  Score=54.35  Aligned_cols=50  Identities=20%  Similarity=0.173  Sum_probs=42.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++|+++++|++++..++++.|+++++                +++||.||+|+|...
T Consensus       195 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g----------------~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          195 VQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ----------------EISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC----------------EEEESEEEECSCCBC
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC----------------EEEeCEEEECcCCCC
Confidence            55667888999999999999997777788888766                799999999999754

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.35  E-value=0.0069  Score=55.47  Aligned_cols=58  Identities=14%  Similarity=0.050  Sum_probs=42.5

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEE-eCC------eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHL-EGN------CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~-~~~------~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++ .|++|+++++|+++.. .++      ++. |.+.+..          .|+..++.|+.||+|+|.|+.
T Consensus       143 ~L~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~----------~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          143 TLVSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRN----------KETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             CCHHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETT----------TTEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcC----------CCcEEEEEcCeEEECCCCccc
Confidence            56778888 6999999999999987 434      543 5543210          122346999999999999984

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=96.34  E-value=0.0057  Score=51.32  Aligned_cols=49  Identities=16%  Similarity=0.195  Sum_probs=42.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +.+.+++.|++++++++|+++...++ .|.|+++++                ++.+|.||+|+|.+
T Consensus        73 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g----------------~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           73 LKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEE----------------THYSKTVIITAGNG  122 (332)
T ss_dssp             HHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESSE----------------EEEEEEEEECCTTS
T ss_pred             HHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECCC----------------EEEeCEEEECCCCC
Confidence            45667778999999999999998876 789999887                79999999999984

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.32  E-value=0.0057  Score=54.82  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=43.2

Q ss_pred             hhHHHHHCCcE--EEcCceEEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTT--FSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~--i~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.+++.|++  ++++++|+.++..++  +|+|++.++.          .|++.++.+|.||+|+|.|+.
T Consensus       107 l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~----------~g~~~~~~~d~VVvAtG~~s~  167 (464)
T 2xve_A          107 IKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHT----------TDTIYSEEFDYVVCCTGHFST  167 (464)
T ss_dssp             HHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETT----------TTEEEEEEESEEEECCCSSSS
T ss_pred             HHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcC----------CCceEEEEcCEEEECCCCCCC
Confidence            44566778988  999999999998776  7888876531          112347999999999998763

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.25  E-value=0.01  Score=53.60  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=47.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+..++.+.|++++|.               ++.||.||+|+|...+. +++.+
T Consensus       232 ~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~---------------~i~aD~Vv~a~G~~pn~~l~~~~  290 (493)
T 1m6i_A          232 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGR---------------KVETDHIVAAVGLEPNVELAKTG  290 (493)
T ss_dssp             HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCCEEECCTTHHHH
T ss_pred             HHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCC---------------EEECCEEEECCCCCccHHHHHHc
Confidence            455677889999999999999887777778887773               79999999999988753 66665

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=96.24  E-value=0.0072  Score=55.48  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=43.1

Q ss_pred             hhHHHHHCCc--EEEcCceEEEEEEeCC--eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGT--TFSNNTSVIGGHLEGN--CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga--~i~~~~~V~~i~~~~~--~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|.  .++++++|+++...++  .|.|++++|.               +++||+||+|+|.++
T Consensus       105 l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~---------------~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A          105 LEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGD---------------EVSARFLVVAAGPLS  159 (549)
T ss_dssp             HHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCC---------------EEEEEEEEECCCSEE
T ss_pred             HHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCC---------------EEEeCEEEECcCCCC
Confidence            3456788887  8999999999988765  7999998873               699999999999875

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=96.22  E-value=0.0061  Score=54.43  Aligned_cols=52  Identities=8%  Similarity=0.116  Sum_probs=44.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+.++++|++|+++++|++|+..+++ +.|+ +++|                +++||.||+|+|.+.+.
T Consensus       217 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g----------------~i~aD~Vv~a~G~~p~~  270 (463)
T 4dna_A          217 LHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHG----------------EIVADQVMLALGRMPNT  270 (463)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSC----------------EEEESEEEECSCEEESC
T ss_pred             HHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCC----------------eEEeCEEEEeeCcccCC
Confidence            566788899999999999999887654 6788 8777                59999999999987654

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=96.21  E-value=0.0071  Score=55.23  Aligned_cols=64  Identities=20%  Similarity=0.086  Sum_probs=45.5

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeE---ecCEEEEcCCCC-hHHHHHHh
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTL---IPKLVVNSAGLS-APALAKRF   75 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i---~a~~VV~aaG~w-a~~l~~~~   75 (240)
                      +|.+.|++ .|++|+++++|++|..+++++. |+..+..          .|++.++   .+|.||+|||+| +.+|+...
T Consensus       200 ~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~----------~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~s  269 (546)
T 1kdg_A          200 TYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPT----------LGPNGFIPVTPKGRVILSAGAFGTSRILFQS  269 (546)
T ss_dssp             THHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTT----------SSGGGEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             HHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecC----------CCceeEEEEEeCCEEEEcCChhcCHHHHHHc
Confidence            36667766 4999999999999998877664 7664410          0122223   889999999997 46676665

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=96.20  E-value=0.0083  Score=50.07  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=41.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.++++|++++. ++|+++...++.|.|++.++.               ++++|.||+|+|.+.
T Consensus        65 l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~---------------~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           65 WQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGK---------------TFEAKSVIIATGGSP  114 (311)
T ss_dssp             HHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCC---------------EEECCEEEECCCCCC
Confidence            44567778999998 899999988888888776662               799999999999765

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.18  E-value=0.011  Score=52.40  Aligned_cols=58  Identities=21%  Similarity=0.256  Sum_probs=46.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEE--eCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHL--EGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~--~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+.  .++++ .|++++|.               ++.||.||+|+|...+ .+++.+
T Consensus       197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~---------------~i~~D~Vv~a~G~~p~~~l~~~~  258 (431)
T 1q1r_A          197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT---------------RLPADLVIAGIGLIPNCELASAA  258 (431)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC---------------EEECSEEEECCCEEECCHHHHHT
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCC---------------EEEcCEEEECCCCCcCcchhhcc
Confidence            45667888999999999999987  45555 58887773               7999999999998765 577766

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=96.17  E-value=0.0047  Score=55.57  Aligned_cols=51  Identities=10%  Similarity=-0.003  Sum_probs=40.6

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+++++| ++..+++++. |..  +++                +++||.||+|+|.++.
T Consensus       124 ~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g----------------~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          124 FLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGL----------------VEDVDKLVLATGGYSY  177 (472)
T ss_dssp             HHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTTEE----------------ECCCSEEEECCCCCGG
T ss_pred             HHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCC----------------eEEeeeEEECCCCCcc
Confidence            4667778889999999999 9988877653 443  333                5789999999999985

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.17  E-value=0.0098  Score=55.21  Aligned_cols=56  Identities=9%  Similarity=0.014  Sum_probs=43.3

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +|.+.++++| ++|+++++|+++..+++++. |..   .+|             +...+.|+.||+|+|.|+..
T Consensus       139 ~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G-------------~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          139 TLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEG-------------TLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTT-------------EEEEEECSCEEECCCCCGGG
T ss_pred             HHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCC-------------cEEEEEcCeEEECCCCCccc
Confidence            4667788889 99999999999998877543 432   344             23469999999999999854

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=96.11  E-value=0.0045  Score=54.03  Aligned_cols=44  Identities=9%  Similarity=0.006  Sum_probs=38.4

Q ss_pred             CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314           11 GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +++|+++++|++++..+++|+|++.+|.               +++||.||.|.|.++.
T Consensus       140 ~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~ad~vV~AdG~~S~  183 (398)
T 2xdo_A          140 NDTVIWDRKLVMLEPGKKKWTLTFENKP---------------SETADLVILANGGMSK  183 (398)
T ss_dssp             TTSEEESCCEEEEEECSSSEEEEETTSC---------------CEEESEEEECSCTTCS
T ss_pred             CCEEEECCEEEEEEECCCEEEEEECCCc---------------EEecCEEEECCCcchh
Confidence            4689999999999988888999888773               6999999999999873

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=96.10  E-value=0.0076  Score=50.26  Aligned_cols=50  Identities=12%  Similarity=0.015  Sum_probs=41.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|+++++ ++|+++...++.+.|+++++.               ++.+|.||+|+|.+.
T Consensus        76 ~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~---------------~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           76 FNKHIEKYEVPVLL-DIVEKIENRGDEFVVKTKRKG---------------EFKADSVILGIGVKR  125 (323)
T ss_dssp             HHHHHHTTTCCEEE-SCEEEEEEC--CEEEEESSSC---------------EEEEEEEEECCCCEE
T ss_pred             HHHHHHHcCCEEEE-EEEEEEEecCCEEEEEECCCC---------------EEEcCEEEECcCCCC
Confidence            45677788999999 999999988888999988763               799999999999873

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=96.08  E-value=0.012  Score=50.21  Aligned_cols=51  Identities=18%  Similarity=0.148  Sum_probs=42.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.+++|+.+...++ .|.|+++++.               ++++|.||+|+|..+
T Consensus        80 l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~---------------~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           80 LWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGN---------------VYRSRAVLIAAGLGA  131 (360)
T ss_dssp             HHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTSC---------------EEEEEEEEECCTTCS
T ss_pred             HHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCCc---------------EEEeeEEEEccCCCc
Confidence            45667778999999999999988765 7889887763               799999999999854

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=96.07  E-value=0.0031  Score=56.20  Aligned_cols=48  Identities=23%  Similarity=0.116  Sum_probs=37.8

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      ++..|++|+++++|++|+..+++|.|++   .+|.               +++||.||+|++++..
T Consensus       245 ~~~lg~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~---------------~~~ad~vV~a~~~~~~  295 (478)
T 2ivd_A          245 AASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRA---------------ELSVAQVVLAAPAHAT  295 (478)
T ss_dssp             HHHHGGGEESSEEEEEEECC--CCEEEEEETTEEE---------------EEECSEEEECSCHHHH
T ss_pred             HHHhhhhEEcCCEEEEEEecCCeEEEEEeecCCCc---------------eEEcCEEEECCCHHHH
Confidence            3445889999999999998888888887   4442               7999999999998753

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.04  E-value=0.0056  Score=55.28  Aligned_cols=59  Identities=12%  Similarity=0.036  Sum_probs=46.4

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHhcCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRFIGLD   79 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~~~~~   79 (240)
                      +.++++|++|+++++|++|+..++...|++++|.               +++||.||+|+|.+.+. |++.+ +..
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~---------------~i~aD~Vv~a~G~~p~~~l~~~~-g~~  324 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNH---------------EYKVDALIFADGRRPDINPITQA-GGK  324 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCC---------------EEECSEEEECCCEEECCHHHHHT-TCC
T ss_pred             HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCe---------------EEEeCEEEECCCcCcCchHHHhc-CCC
Confidence            4577889999999999999865443357776663               79999999999999764 88877 444

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.02  E-value=0.013  Score=53.48  Aligned_cols=50  Identities=12%  Similarity=0.175  Sum_probs=40.7

Q ss_pred             HHHHHCC--cEEEcCceEEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            5 GEAENHG--TTFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         5 ~~A~~~G--a~i~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      ..+++.+  ..++++++|++++..+  +.|+|++++|.               +++||.||+|+|.++.
T Consensus       102 ~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~---------------~~~ad~vV~AtG~~s~  155 (542)
T 1w4x_A          102 FVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD---------------RIRARYLIMASGQLSV  155 (542)
T ss_dssp             HHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC---------------EEEEEEEEECCCSCCC
T ss_pred             HHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCC---------------EEEeCEEEECcCCCCC
Confidence            3456665  6899999999998865  37999998773               6999999999999873

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.99  E-value=0.014  Score=52.68  Aligned_cols=53  Identities=8%  Similarity=0.058  Sum_probs=44.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+.++++|++|+++++|++|+..++ .+.|++++|.               +++||.||+|+|.+.+.
T Consensus       237 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~---------------~i~~D~vv~a~G~~p~~  290 (490)
T 1fec_A          237 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA---------------EADYDVVMLAIGRVPRS  290 (490)
T ss_dssp             HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSCEEESC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCc---------------EEEcCEEEEccCCCcCc
Confidence            55677889999999999999987664 4778887773               69999999999987764

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=95.96  E-value=0.0086  Score=52.41  Aligned_cols=59  Identities=8%  Similarity=0.073  Sum_probs=44.2

Q ss_pred             hhhHHHHH-CCc-EEEcCceEEEEEEeCCeEEEEecC---CcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAEN-HGT-TFSNNTSVIGGHLEGNCMNVYISE---SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~-~Ga-~i~~~~~V~~i~~~~~~~~V~t~~---g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .|.+.+++ .|+ +|+++++|++++. +++++|++.+   |             ++.+++||.||.|.|.++. +.+.+
T Consensus       112 ~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g-------------~~~~~~ad~vV~AdG~~S~-vR~~l  175 (410)
T 3c96_A          112 ILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHG-------------KPQALGADVLVGADGIHSA-VRAHL  175 (410)
T ss_dssp             HHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTS-------------CEEEEEESEEEECCCTTCH-HHHHH
T ss_pred             HHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCC-------------CceEEecCEEEECCCccch-hHHHh
Confidence            35566666 474 8999999999988 6678777654   3             1237999999999999875 45555

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=95.91  E-value=0.007  Score=54.76  Aligned_cols=55  Identities=11%  Similarity=0.020  Sum_probs=42.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEe---CCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLE---GNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~---~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.+++.|++|+++++|++++..   ++.+.|++.   +|             ++.+++||.||.|+|.++.
T Consensus       171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g-------------~~~~i~ad~VV~A~G~~S~  231 (497)
T 2bry_A          171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPA-------------QLASYEFDVLISAAGGKFV  231 (497)
T ss_dssp             HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCH-------------HHHTCCBSEEEECCCTTCC
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCC-------------CEEEEEcCEEEECCCCCcc
Confidence            3567788899999999999999874   345677663   33             1126999999999999873

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.88  E-value=0.019  Score=51.23  Aligned_cols=54  Identities=7%  Similarity=0.006  Sum_probs=44.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++|+++++|++|+..++++.|++++|.             + ++++|.||+|+|...+.
T Consensus       213 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~-------------~-~i~~D~vv~a~G~~p~~  266 (463)
T 2r9z_A          213 LAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGT-------------R-LEGFDSVIWAVGRAPNT  266 (463)
T ss_dssp             HHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCC-------------E-EEEESEEEECSCEEESC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCc-------------E-EEEcCEEEECCCCCcCC
Confidence            456678899999999999999987777788887771             1 49999999999987654

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.88  E-value=0.02  Score=52.26  Aligned_cols=58  Identities=14%  Similarity=0.213  Sum_probs=46.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEE-------------------eCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHL-------------------EGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS   63 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~-------------------~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a   63 (240)
                      +.+..++.|++|+++++|++++.                   .++++.+++.+|.               +++||.||+|
T Consensus       198 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~---------------~i~~D~vi~a  262 (565)
T 3ntd_A          198 AHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGE---------------LLETDLLIMA  262 (565)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSC---------------EEEESEEEEC
T ss_pred             HHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCC---------------EEEcCEEEEC
Confidence            45667889999999999999987                   3567777776663               7999999999


Q ss_pred             CCCChH-HHHHHh
Q 026314           64 AGLSAP-ALAKRF   75 (240)
Q Consensus        64 aG~wa~-~l~~~~   75 (240)
                      +|...+ .+++.+
T Consensus       263 ~G~~p~~~l~~~~  275 (565)
T 3ntd_A          263 IGVRPETQLARDA  275 (565)
T ss_dssp             SCEEECCHHHHHH
T ss_pred             cCCccchHHHHhC
Confidence            999876 566655

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=95.87  E-value=0.011  Score=49.21  Aligned_cols=51  Identities=6%  Similarity=0.030  Sum_probs=41.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC---CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG---NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~---~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.+++|+.+....   +.|.|++++|.               ++++|.||+|+|.+.
T Consensus        62 ~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~---------------~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGA---------------VLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCC---------------EEEeCEEEECcCCCc
Confidence            4456677899999999999997653   36888887763               799999999999864

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.87  E-value=0.016  Score=51.60  Aligned_cols=53  Identities=6%  Similarity=0.076  Sum_probs=43.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++++++++|++++..+++ +.|++++|.               +++||.||+|+|...+.
T Consensus       214 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~~D~vv~a~G~~p~~  267 (450)
T 1ges_A          214 LVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGR---------------SETVDCLIWAIGREPAN  267 (450)
T ss_dssp             HHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSCEEESC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCc---------------EEEcCEEEECCCCCcCC
Confidence            556778889999999999999876543 778887773               69999999999987653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=95.87  E-value=0.01  Score=55.43  Aligned_cols=50  Identities=18%  Similarity=0.089  Sum_probs=40.2

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |.+.+++ .|++|+ +++|+.+..+++++ .|.+.+|.               +++||.||+|+|.|+
T Consensus       130 L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~---------------~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          130 VRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGL---------------KFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSE---------------EEEEEEEEECCSTTT
T ss_pred             HHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCC---------------EEECCEEEEcCCCCc
Confidence            4556666 599995 68999998877766 58887762               799999999999984

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.85  E-value=0.0068  Score=51.13  Aligned_cols=49  Identities=22%  Similarity=0.363  Sum_probs=41.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.++ |+++...++.|+|++ ++.               ++++|.||+|+|.+.
T Consensus        76 l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~---------------~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           76 FRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSK---------------AILADAVILAIGAVA  124 (333)
T ss_dssp             HHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSE---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCc---------------EEEcCEEEECCCCCc
Confidence            4566788999999987 999988777888888 442               799999999999975

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=95.85  E-value=0.013  Score=54.54  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=40.2

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |.+.+++ .|++|+ +++|+++..+++++. |.+.+|.               ++.|+.||+|+|.|+
T Consensus       129 L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~---------------~i~AdaVVLATG~~s  180 (637)
T 2zxi_A          129 MKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGV---------------EYKTKAVVVTTGTFL  180 (637)
T ss_dssp             HHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSC---------------EEECSEEEECCTTCB
T ss_pred             HHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCc---------------EEEeCEEEEccCCCc
Confidence            4556666 499996 689999988877764 8887773               799999999999873

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.77  E-value=0.02  Score=51.65  Aligned_cols=53  Identities=19%  Similarity=0.180  Sum_probs=43.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++|+++++|++|+..++ .+.|++++|.               +++||.||+|+|...+.
T Consensus       241 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~---------------~i~~D~vv~a~G~~p~~  294 (495)
T 2wpf_A          241 VTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGK---------------TLDVDVVMMAIGRIPRT  294 (495)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSCEEECC
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCc---------------EEEcCEEEECCCCcccc
Confidence            55677889999999999999987654 4678887773               79999999999987653

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.76  E-value=0.018  Score=53.89  Aligned_cols=55  Identities=13%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             hhhHHHHHC-Cc-EEEcCceEEEEEEeCC---eEE-EEe---cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENH-GT-TFSNNTSVIGGHLEGN---CMN-VYI---SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~-Ga-~i~~~~~V~~i~~~~~---~~~-V~t---~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.++++ |+ +|+++++|+++..+++   ++. |..   .+|             +...|.|+.||+|+|.|+.
T Consensus       156 ~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g-------------~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          156 IIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREP-------------KFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             HHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSS-------------CEEEEECSEEEECCCCBCS
T ss_pred             HHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCC-------------cEEEEEcCEEEECCCcccc
Confidence            356677777 99 9999999999988766   654 443   233             2346999999999999885

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.73  E-value=0.013  Score=53.59  Aligned_cols=53  Identities=13%  Similarity=0.233  Sum_probs=42.6

Q ss_pred             hhHHHHHCCc--EEEcCceEEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGT--TFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga--~i~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+.+++.|.  .++++++|+++...+  +.|.|++++|.               +++||.||+|+|.++..
T Consensus        93 l~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~---------------~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A           93 VNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEE---------------VVTCRFLISATGPLSAS  149 (545)
T ss_dssp             HHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTE---------------EEEEEEEEECCCSCBC-
T ss_pred             HHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCC---------------EEEeCEEEECcCCCCCC
Confidence            3455677787  899999999998765  47999998873               79999999999988643

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=95.72  E-value=0.019  Score=53.58  Aligned_cols=51  Identities=14%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+.+++. |++|+. .+|+.+...++++. |.+.+|.               +++||.||+|+|.|+.
T Consensus       123 L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~---------------~i~Ad~VVLATG~~s~  175 (641)
T 3cp8_A          123 MRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGR---------------AIQAKAAILACGTFLN  175 (641)
T ss_dssp             HHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSC---------------EEEEEEEEECCTTCBT
T ss_pred             HHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCc---------------EEEeCEEEECcCCCCC
Confidence            45566664 999974 69999988888876 8887773               7999999999999854

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=95.68  E-value=0.017  Score=48.34  Aligned_cols=49  Identities=14%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++. .+|+++...++.|.|+++++                ++++|.||+|+|.+.
T Consensus        78 ~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~~----------------~~~~~~li~AtG~~~  126 (319)
T 3cty_A           78 FADHAANYAKIREG-VEVRSIKKTQGGFDIETNDD----------------TYHAKYVIITTGTTH  126 (319)
T ss_dssp             HHHHHHTTSEEEET-CCEEEEEEETTEEEEEESSS----------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCEEEE-eeEEEEEEeCCEEEEEECCC----------------EEEeCEEEECCCCCc
Confidence            45667788999998 89999998888888887543                799999999999864

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.68  E-value=0.019  Score=53.69  Aligned_cols=50  Identities=12%  Similarity=0.004  Sum_probs=41.1

Q ss_pred             ChhhHHHHHCCcEEEcCceEEEEEEeC--CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            1 MWVQGEAENHGTTFSNNTSVIGGHLEG--NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         1 ~al~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      ++|++.++.+|++|+++++|+.|...+  +++. |.+.+|.               ++.||.||..+.
T Consensus       382 qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge---------------~i~A~~VVs~~~  434 (650)
T 1vg0_A          382 QCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQ---------------RIISKHFIIEDS  434 (650)
T ss_dssp             HHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSC---------------EEECSEEEEEGG
T ss_pred             HHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCC---------------EEEcCEEEEChh
Confidence            478899999999999999999999887  6665 6666663               799999988554

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.62  E-value=0.017  Score=55.16  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      .+...|++|+++++|++|+..+++|+|++.+|.               +++||+||+|+.+
T Consensus       538 ~aLa~gl~I~l~t~V~~I~~~~~~v~V~~~~G~---------------~i~Ad~VIvA~P~  583 (776)
T 4gut_A          538 EKLAEGLDIQLKSPVQCIDYSGDEVQVTTTDGT---------------GYSAQKVLVTVPL  583 (776)
T ss_dssp             HHHHTTSCEESSCCEEEEECSSSSEEEEETTCC---------------EEEESEEEECCCH
T ss_pred             HHHHhCCcEEcCCeeEEEEEcCCEEEEEECCCc---------------EEEcCEEEECCCH
Confidence            444569999999999999998888999998773               6999999999965

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.60  E-value=0.029  Score=49.19  Aligned_cols=54  Identities=24%  Similarity=0.309  Sum_probs=43.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+  ++  .|++++|.               +++||.||+|+|...+ .+++.+
T Consensus       193 l~~~l~~~GV~i~~~~~v~~i~--~~--~v~~~~g~---------------~i~~D~vi~a~G~~p~~~l~~~~  247 (408)
T 2gqw_A          193 VARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGT---------------RIAADMVVVGIGVLANDALARAA  247 (408)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEE--TT--EEEETTSC---------------EEECSEEEECSCEEECCHHHHHH
T ss_pred             HHHHHHHcCcEEEeCCEEEEEE--CC--EEEECCCC---------------EEEcCEEEECcCCCccHHHHHhC
Confidence            4566788999999999999998  44  56676663               7999999999998865 577766

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.022  Score=51.06  Aligned_cols=53  Identities=8%  Similarity=0.081  Sum_probs=41.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++|+..+++  +.|++++|+              .++.||.||+|+|...+
T Consensus       232 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~--------------~~i~~D~vv~a~G~~p~  286 (479)
T 2hqm_A          232 ITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSK--------------SIDDVDELIWTIGRKSH  286 (479)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSC--------------EEEEESEEEECSCEEEC
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCc--------------EEEEcCEEEECCCCCCc
Confidence            456677889999999999999876544  678887661              17999999999997554

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=95.57  E-value=0.013  Score=52.34  Aligned_cols=48  Identities=6%  Similarity=0.041  Sum_probs=38.9

Q ss_pred             HHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            8 ENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         8 ~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++.+ ++|+++++|++|+..+++|.|++.+|.            +..+++||+||+|+.++
T Consensus       247 ~~l~~~~i~~~~~V~~i~~~~~~v~v~~~~g~------------~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          247 DRIGTDNIVFGAEVTSMKNVSEGVTVEYTAGG------------SKKSITADYAICTIPPH  295 (489)
T ss_dssp             HHHCGGGEETTCEEEEEEEETTEEEEEEEETT------------EEEEEEESEEEECSCHH
T ss_pred             HhcCCCeEEECCEEEEEEEcCCeEEEEEecCC------------eEEEEECCEEEECCCHH
Confidence            4456 899999999999999999998886651            11279999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.49  E-value=0.02  Score=50.72  Aligned_cols=52  Identities=17%  Similarity=0.082  Sum_probs=39.9

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEe---CCeE--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLE---GNCM--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~---~~~~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ...+++.|.+++++++|++|+..   ++.|  .|++.++.           +++.++++|.||+|+|.
T Consensus       134 ~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~-----------g~~~~~~~d~lVlAtG~  190 (463)
T 3s5w_A          134 RWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNAD-----------GEELVRTTRALVVSPGG  190 (463)
T ss_dssp             HHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETT-----------SCEEEEEESEEEECCCC
T ss_pred             HHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCC-----------CceEEEEeCEEEECCCC
Confidence            34466779999999999999887   4444  67776651           34457999999999996

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.42  E-value=0.03  Score=49.87  Aligned_cols=55  Identities=20%  Similarity=0.329  Sum_probs=41.7

Q ss_pred             hhHHH-HHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEA-ENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A-~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+.. +++|++|+++++|++++..++++.|++.  +|             ++.+++||.||+|+|...+.
T Consensus       221 l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g-------------~~~~i~~D~vv~a~G~~p~~  278 (468)
T 2qae_A          221 LVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNG-------------KRETVTCEALLVSVGRRPFT  278 (468)
T ss_dssp             HHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC----------------EEEEEESEEEECSCEEECC
T ss_pred             HHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCC-------------ceEEEECCEEEECCCcccCC
Confidence            45566 8899999999999999887766766654  33             12279999999999987653

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.41  E-value=0.033  Score=49.42  Aligned_cols=51  Identities=12%  Similarity=0.179  Sum_probs=41.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++|+..++++. |.+ +|.               +++||.||+|+|...+
T Consensus       197 l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~---------------~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          197 LAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGK---------------EIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSC---------------EEEESEEEECCCEEEC
T ss_pred             HHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCC---------------EEECCEEEECcCCCCC
Confidence            55667889999999999999987677775 555 442               7999999999997654

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=95.41  E-value=0.015  Score=54.57  Aligned_cols=58  Identities=12%  Similarity=0.035  Sum_probs=42.5

Q ss_pred             hhhHHHHHC--CcEEEcCceEEEEEEeCC---eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENH--GTTFSNNTSVIGGHLEGN---CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~--Ga~i~~~~~V~~i~~~~~---~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++  |++|++++.|+++...++   ++. |...+..          .++...|.|+.||+|+|.++.
T Consensus       171 ~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~----------~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          171 IVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLR----------ANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             HHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESS----------SSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcC----------CCcEEEEEeCEEEECCCcccc
Confidence            467778887  999999999999988766   654 4432110          123446999999999999774

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=95.40  E-value=0.013  Score=53.62  Aligned_cols=62  Identities=16%  Similarity=0.056  Sum_probs=42.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC---eEE-EEecCCcccccCCCCCCCCCceeE---ecCEEEEcCCCC-hHHHHHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN---CMN-VYISESKNLRNWDGVSPLQPELTL---IPKLVVNSAGLS-APALAKR   74 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~---~~~-V~t~~g~~~~~~~~~~~~~~~~~i---~a~~VV~aaG~w-a~~l~~~   74 (240)
                      |...+++.|++|++++.|++|..+++   ++. |+..+.           .|+++++   .++.||+|||++ +.+|+..
T Consensus       200 ~~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~-----------~g~~~~~~v~a~k~VILaaGa~~sp~lL~~  268 (536)
T 1ju2_A          200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDS-----------NGTPHQAFVRSKGEVIVSAGTIGTPQLLLL  268 (536)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECT-----------TSCEEEEEEEEEEEEEECCHHHHHHHHHHH
T ss_pred             hhhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeC-----------CCceEEEEeccCCEEEEcCcccCCHHHHHH
Confidence            34456678999999999999988763   443 655321           0223345   578999999997 6667665


Q ss_pred             h
Q 026314           75 F   75 (240)
Q Consensus        75 ~   75 (240)
                      .
T Consensus       269 S  269 (536)
T 1ju2_A          269 S  269 (536)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.39  E-value=0.048  Score=48.62  Aligned_cols=54  Identities=13%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec-C--CcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS-E--SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~-~--g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++|+..++++.|+++ +  |             ++.++++|.||+|+|...+
T Consensus       216 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g-------------~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          216 LRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGG-------------EGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCC-------------SCEEEEESEEEECSCEEES
T ss_pred             HHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCC-------------ceeEEEcCEEEECCCcccC
Confidence            456678899999999999999988777777664 4  4             2236999999999997654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=95.36  E-value=0.03  Score=49.60  Aligned_cols=50  Identities=10%  Similarity=0.046  Sum_probs=39.5

Q ss_pred             CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314           10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|++|+++++|++++..++++.|++.+..          .|++.+++||.||+|+|.-.+
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~----------~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAG----------SGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETT----------TCCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcC----------CCCeEEEECCEEEEeeCCCCC
Confidence            69999999999999998888887775221          123446999999999998654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.22  E-value=0.039  Score=49.46  Aligned_cols=57  Identities=19%  Similarity=0.164  Sum_probs=43.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+.++++|++|+++++|++|+..++.+.|.++++                +++||.||+|+|...+ .+++.+
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~----------------~i~~D~vi~a~G~~p~~~~l~~~  290 (480)
T 3cgb_A          233 IYKEADKHHIEILTNENVKAFKGNERVEAVETDKG----------------TYKADLVLVSVGVKPNTDFLEGT  290 (480)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTE----------------EEECSEEEECSCEEESCGGGTTS
T ss_pred             HHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCC----------------EEEcCEEEECcCCCcChHHHHhC
Confidence            55677889999999999999986533234677554                7999999999998764 344433

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.13  E-value=0.043  Score=49.46  Aligned_cols=53  Identities=9%  Similarity=0.148  Sum_probs=42.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCcee-EecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELT-LIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~-i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++|+++++|++|+..++ .+.|++++|.               + ++||.||+|+|.-.+.
T Consensus       223 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~~~~~D~vi~a~G~~p~~  277 (500)
T 1onf_A          223 LENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR---------------IYEHFDHVIYCVGRSPDT  277 (500)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSC---------------EEEEESEEEECCCBCCTT
T ss_pred             HHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCc---------------EEEECCEEEECCCCCcCC
Confidence            45677889999999999999987653 4778887772               4 9999999999976543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.11  E-value=0.055  Score=45.05  Aligned_cols=58  Identities=14%  Similarity=0.072  Sum_probs=40.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.++++|++|+++++|++++..++++. |++.+...         .|++.+++||.||+|+|.-.+
T Consensus       190 l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~---------~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          190 LMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             HHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTT---------CCCCEEEECSEEEECSCEEES
T ss_pred             HHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccC---------CCceEEEEcCEEEEEeCCCCC
Confidence            34456678999999999999987765543 55543100         012337999999999997543

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.10  E-value=0.065  Score=48.05  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=43.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..++++.|+..+..          .|++.++++|.||+|+|.-.+
T Consensus       245 l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~----------~g~~~~i~~D~Vi~a~G~~p~  301 (491)
T 3urh_A          245 LQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVK----------GGEATTLDAEVVLIATGRKPS  301 (491)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETT----------SCCCEEEEESEEEECCCCEEC
T ss_pred             HHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecC----------CCceEEEEcCEEEEeeCCccC
Confidence            456677889999999999999988887776654310          012347999999999997544

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=95.08  E-value=0.047  Score=44.79  Aligned_cols=50  Identities=10%  Similarity=0.049  Sum_probs=40.2

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++. +++++. ++|+.+...++.|.|+++++.               ++++|.||+|+|.+.
T Consensus        62 ~~~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~---------------~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           62 ARRQIERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGR---------------RETAGRLILAMGVTD  112 (297)
T ss_dssp             HHHHHTTCTTEEEEE-SCEEEEEEETTEEEEEETTSC---------------EEEEEEEEECCCCEE
T ss_pred             HHHHHHhcCCeEEEE-eEEEEEEEcCCeEEEEECCCC---------------EEEcCEEEECCCCCC
Confidence            34555666 778775 599999998888999998773               699999999999854

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=94.98  E-value=0.039  Score=49.42  Aligned_cols=53  Identities=15%  Similarity=0.058  Sum_probs=42.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecC----CcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISE----SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~----g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      +.+..+++|++|+++++|++|+..++++.|++++    |.               ++.||.||+|+|...+.
T Consensus       232 l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~---------------~~~~D~vv~a~G~~p~~  288 (482)
T 1ojt_A          232 WQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKE---------------PQRYDAVLVAAGRAPNG  288 (482)
T ss_dssp             HHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSS---------------CEEESCEEECCCEEECG
T ss_pred             HHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCce---------------EEEcCEEEECcCCCcCC
Confidence            4456678899999999999999887777777654    31               58899999999976543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.98  E-value=0.03  Score=50.86  Aligned_cols=51  Identities=8%  Similarity=0.084  Sum_probs=41.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEe---CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLE---GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~---~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.+++|+.+...   ++.+.|++++|.               ++++|.||+|+|.+.
T Consensus       273 l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~---------------~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          273 LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGA---------------VLKARSIIIATGAKW  326 (521)
T ss_dssp             HHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCC---------------EEEcCEEEECCCCCc
Confidence            456677889999999999999754   236888887773               799999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.94  E-value=0.053  Score=48.35  Aligned_cols=54  Identities=13%  Similarity=0.146  Sum_probs=42.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++|+++++|++++..++++.|+..++.           + +.++++|.||+|+|.-.
T Consensus       227 l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~-----------g-~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          227 AQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAE-----------G-EKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             HHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSS-----------E-EEEEEESEEEECSCEEE
T ss_pred             HHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCC-----------C-cEEEECCEEEEeeCCcc
Confidence            455677889999999999999988877777665441           1 23799999999999743

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=94.94  E-value=0.049  Score=48.59  Aligned_cols=52  Identities=19%  Similarity=0.250  Sum_probs=41.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEe-----cCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYI-----SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t-----~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..+++ +.|+.     .++               .+++||.||+|+|...+
T Consensus       226 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~---------------~~i~~D~vv~a~G~~p~  283 (474)
T 1zmd_A          226 FQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKA---------------EVITCDVLLVCIGRRPF  283 (474)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCC---------------EEEEESEEEECSCEEEC
T ss_pred             HHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCc---------------eEEEcCEEEECcCCCcC
Confidence            456678899999999999999887765 66653     222               26999999999998754

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.92  E-value=0.051  Score=48.21  Aligned_cols=54  Identities=13%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..++++.|++. +|+             ..++++|.||+|+|...+
T Consensus       217 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~-------------~~~~~~D~vv~a~G~~p~  271 (455)
T 1ebd_A          217 IKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGE-------------TKTIDADYVLVTVGRRPN  271 (455)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTE-------------EEEEEESEEEECSCEEES
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCc-------------eeEEEcCEEEECcCCCcc
Confidence            456678899999999999999987777766653 211             126999999999998654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=94.85  E-value=0.045  Score=49.46  Aligned_cols=53  Identities=11%  Similarity=-0.024  Sum_probs=41.6

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeC--------CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEG--------NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~--------~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ...|++.+-.|+++++|++++...        +.|+|++.++.          .+++.++.|+.||+|+|.
T Consensus       152 ~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~----------~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          152 RWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVE----------TGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETT----------TCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCC----------CceEEEEEeCEEEECcCC
Confidence            445667788899999999998754        25889887763          345668999999999994

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.85  E-value=0.033  Score=46.72  Aligned_cols=50  Identities=16%  Similarity=0.141  Sum_probs=39.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEe--CCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLE--GNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~--~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++. ++|+++...  ++. |.|.+.+|.               ++++|+||+|+|.+.
T Consensus        71 l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~---------------~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           71 MHQQAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNG---------------EYRAKAVILATGADP  123 (325)
T ss_dssp             HHHHHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSC---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCC---------------EEEeCEEEECcCCCc
Confidence            45667888999997 799999876  444 777776663               799999999999864

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=94.75  E-value=0.06  Score=47.88  Aligned_cols=54  Identities=17%  Similarity=0.215  Sum_probs=41.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..++++.|++. +|+             ..++.||.||+|+|...+
T Consensus       218 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~-------------~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          218 IEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGV-------------AQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSC-------------EEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCc-------------eEEEEcCEEEECCCCCcc
Confidence            456677889999999999999877666766654 341             227999999999997654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=94.67  E-value=0.058  Score=48.10  Aligned_cols=57  Identities=18%  Similarity=0.275  Sum_probs=41.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEE--eCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHL--EGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~--~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++|+.  .++.+.|++++..          .++..+++||.||+|+|...+
T Consensus       230 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~----------~g~~~~~~~D~vv~a~G~~p~  288 (478)
T 1v59_A          230 TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTK----------TNKQENLEAEVLLVAVGRRPY  288 (478)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETT----------TTEEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcC----------CCCceEEECCEEEECCCCCcC
Confidence            45667889999999999999987  4556666654100          001126999999999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.62  E-value=0.065  Score=44.82  Aligned_cols=53  Identities=15%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|+++++++ |+++...++.|.+++.....            ..++.+|.||+|+|.+.
T Consensus        90 ~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~------------~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           90 MREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNED------------AEPVTTDAIILATGASA  142 (338)
T ss_dssp             HHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSS------------SCCEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCC------------CcEEEeCEEEECcCCCc
Confidence            5567788999999988 99999888888888742211            12699999999999854

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.59  E-value=0.097  Score=43.34  Aligned_cols=62  Identities=18%  Similarity=0.077  Sum_probs=43.6

Q ss_pred             hHHHHH-CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            4 QGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         4 ~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      .+.+.+ .|++++++++|+++...++...|++.+..          .|++.++.+|.||.|+|...+ .+++.+
T Consensus       196 ~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~----------~g~~~~~~~D~vv~a~G~~p~~~~~~~~  259 (323)
T 3f8d_A          196 VETVKKKPNVEFVLNSVVKEIKGDKVVKQVVVENLK----------TGEIKELNVNGVFIEIGFDPPTDFAKSN  259 (323)
T ss_dssp             HHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETT----------TCCEEEEECSEEEECCCEECCHHHHHHT
T ss_pred             HHHHHhCCCcEEEeCCEEEEEeccCceeEEEEEECC----------CCceEEEEcCEEEEEECCCCChhHHhhc
Confidence            344544 49999999999999876554446655410          122346999999999998877 666665

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=94.55  E-value=0.034  Score=50.19  Aligned_cols=43  Identities=12%  Similarity=0.010  Sum_probs=36.5

Q ss_pred             cEEEcCceEEEEEEe-CCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314           12 TTFSNNTSVIGGHLE-GNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus        12 a~i~~~~~V~~i~~~-~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+|+++++|++|... ++++.|++.+|.               +++||+||+|+.++.-
T Consensus       215 ~~i~~~~~V~~I~~~~~~~v~v~~~~g~---------------~~~ad~VI~t~p~~~l  258 (516)
T 1rsg_A          215 NWLKLSCEVKSITREPSKNVTVNCEDGT---------------VYNADYVIITVPQSVL  258 (516)
T ss_dssp             GGEETTCCEEEEEECTTSCEEEEETTSC---------------EEEEEEEEECCCHHHH
T ss_pred             CEEEECCEEEEEEEcCCCeEEEEECCCc---------------EEECCEEEECCCHHHh
Confidence            679999999999986 567889998873               6999999999987554

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=94.48  E-value=0.05  Score=48.17  Aligned_cols=50  Identities=18%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.++++|++|+++++|++|+.. +++ .|+++++                +++||.||+|+|...+
T Consensus       197 l~~~l~~~gv~i~~~~~v~~i~~~-~~v~~v~~~~~----------------~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          197 LTEEMEANNITIATGETVERYEGD-GRVQKVVTDKN----------------AYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHTTTEEEEESCCEEEEECS-SBCCEEEESSC----------------EEECSEEEECSCEEES
T ss_pred             HHHHHHhCCCEEEcCCEEEEEEcc-CcEEEEEECCC----------------EEECCEEEECcCCCCC
Confidence            456677889999999999999865 444 4666443                7999999999998654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=94.46  E-value=0.039  Score=49.37  Aligned_cols=49  Identities=10%  Similarity=0.043  Sum_probs=38.2

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++.+.+|+++++|++|+..+++|.|++.+++.           ...+++||+||+|++++
T Consensus       249 ~~l~~~i~~~~~V~~I~~~~~~v~v~~~~~~~-----------~~~~~~ad~vI~t~p~~  297 (498)
T 2iid_A          249 RDIQDKVHFNAQVIKIQQNDQKVTVVYETLSK-----------ETPSVTADYVIVCTTSR  297 (498)
T ss_dssp             HHTGGGEESSCEEEEEEECSSCEEEEEECSSS-----------CCCEEEESEEEECSCHH
T ss_pred             HhcccccccCCEEEEEEECCCeEEEEEecCCc-----------ccceEEeCEEEECCChH
Confidence            44455899999999999988889888876621           01148999999999975

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.44  E-value=0.043  Score=46.31  Aligned_cols=49  Identities=16%  Similarity=0.195  Sum_probs=39.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEE-EecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNV-YISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V-~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|+++++++ |+++.. ++.|.| +++++.               ++++|.||+|+|.+.
T Consensus        77 l~~~~~~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~---------------~~~~d~lviAtG~~~  126 (335)
T 2a87_A           77 MREQALRFGADLRMED-VESVSL-HGPLKSVVTADGQ---------------THRARAVILAMGAAA  126 (335)
T ss_dssp             HHHHHHHTTCEEECCC-EEEEEC-SSSSEEEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHcCCEEEEee-EEEEEe-CCcEEEEEeCCCC---------------EEEeCEEEECCCCCc
Confidence            4456778899999987 999887 556777 776662               799999999999854

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=94.22  E-value=0.095  Score=43.65  Aligned_cols=55  Identities=9%  Similarity=-0.076  Sum_probs=40.4

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.+++.|++++.+++|+.++..++...|+..++.          .++..++.+|.||+|+|.-.
T Consensus       196 ~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~----------~g~~~~~~~D~vv~a~G~~p  250 (332)
T 3lzw_A          196 VENLHASKVNVLTPFVPAELIGEDKIEQLVLEEVK----------GDRKEILEIDDLIVNYGFVS  250 (332)
T ss_dssp             HHHHHHSSCEEETTEEEEEEECSSSCCEEEEEETT----------SCCEEEEECSEEEECCCEEC
T ss_pred             HHHHhcCCeEEEeCceeeEEecCCceEEEEEEecC----------CCceEEEECCEEEEeeccCC
Confidence            35578899999999999999876664445554421          12344799999999999754

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=94.20  E-value=0.078  Score=46.17  Aligned_cols=46  Identities=7%  Similarity=0.010  Sum_probs=38.0

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      .+..+++|++++.+++|++|...+.  .|++++|.               ++.+|+||+|+|.
T Consensus        69 ~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~---------------~~~yd~lvlAtG~  114 (385)
T 3klj_A           69 NDWYEKNNIKVITSEFATSIDPNNK--LVTLKSGE---------------KIKYEKLIIASGS  114 (385)
T ss_dssp             HHHHHHTTCEEECSCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCE
T ss_pred             HHHHHHCCCEEEeCCEEEEEECCCC--EEEECCCC---------------EEECCEEEEecCC
Confidence            4556788999999999999987665  46677763               7999999999996

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.19  E-value=0.085  Score=44.07  Aligned_cols=56  Identities=21%  Similarity=0.236  Sum_probs=39.9

Q ss_pred             hhHHHHHC-CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENH-GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~-Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+...+. |++|+++++|+.|+..++++. |++.+..          .++..++.||.||+|+|.-.
T Consensus       214 ~~~~l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~----------~g~~~~i~~D~vi~a~G~~p  271 (338)
T 3itj_A          214 MQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTK----------KNEETDLPVSGLFYAIGHTP  271 (338)
T ss_dssp             HHHHHHHCTTEEEECSEEEEEEEESSSSEEEEEEEETT----------TTEEEEEECSEEEECSCEEE
T ss_pred             HHHHHHhcCCeEEeecceeEEEEcccCcEEEEEEEECC----------CCceEEEEeCEEEEEeCCCC
Confidence            34556565 999999999999988776553 6554410          11233799999999999754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.18  E-value=0.087  Score=48.65  Aligned_cols=57  Identities=14%  Similarity=0.024  Sum_probs=40.8

Q ss_pred             HHCCcEEEcCceEEEEEEe----CCeEE-EEecCCcccccCCCCCCCCCceeEecC-EEEEcCCCC-hHHHHHHh
Q 026314            8 ENHGTTFSNNTSVIGGHLE----GNCMN-VYISESKNLRNWDGVSPLQPELTLIPK-LVVNSAGLS-APALAKRF   75 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~----~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~-~VV~aaG~w-a~~l~~~~   75 (240)
                      ++.+.+|++++.|++|..+    +++++ |+..+.           .|+++++.|+ -||+|||+. +.+|+...
T Consensus       238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~-----------~G~~~~v~A~kEVILsAGa~~SPqLL~lS  301 (583)
T 3qvp_A          238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTH-----------KGNTHNVYAKHEVLLAAGSAVSPTILEYS  301 (583)
T ss_dssp             TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESS-----------TTCEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEec-----------CCcEEEEEECCEEEEeCCccCCHHHHHHc
Confidence            3568999999999999887    55554 665421           1345679997 599999876 56676554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=94.17  E-value=0.069  Score=47.50  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++|+..++++.|++.   +|             +..++++|.||+|+|...+
T Consensus       224 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g-------------~~~~~~~D~vv~a~G~~p~  280 (470)
T 1dxl_A          224 FQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGG-------------EQTIIEADVVLVSAGRTPF  280 (470)
T ss_dssp             HHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSC-------------CCEEEEESEEECCCCEEEC
T ss_pred             HHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCC-------------cceEEECCEEEECCCCCcC
Confidence            456678899999999999999876666666553   23             1227999999999998654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=94.15  E-value=0.1  Score=46.65  Aligned_cols=56  Identities=16%  Similarity=0.132  Sum_probs=42.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++|+++++|++++..++ .+.|++.++.          .+++.++.+|.||+|+|.-.
T Consensus       233 l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~----------~~~~~~~~~D~vi~a~G~~p  289 (483)
T 3dgh_A          233 VAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVE----------TGEESEDVYDTVLWAIGRKG  289 (483)
T ss_dssp             HHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETT----------TCCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCC----------CCceeEEEcCEEEECccccc
Confidence            45667889999999999999987654 4667665541          12344799999999999743

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=94.09  E-value=0.12  Score=42.67  Aligned_cols=49  Identities=14%  Similarity=0.039  Sum_probs=37.7

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEE-EEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMN-VYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .++.|++|+++++|+++...++++. |+..  +|             ++.++.+|.||.|+|.-.
T Consensus       193 ~~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g-------------~~~~~~~D~vv~a~G~~p  244 (315)
T 3r9u_A          193 KKNEKIELITSASVDEVYGDKMGVAGVKVKLKDG-------------SIRDLNVPGIFTFVGLNV  244 (315)
T ss_dssp             HHCTTEEEECSCEEEEEEEETTEEEEEEEECTTS-------------CEEEECCSCEEECSCEEE
T ss_pred             HhcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCC-------------CeEEeecCeEEEEEcCCC
Confidence            3578999999999999988876543 5443  44             234799999999999743

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=94.04  E-value=0.15  Score=42.52  Aligned_cols=54  Identities=17%  Similarity=0.080  Sum_probs=39.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.+++.|++|+++++|+++...++++ .|+..   +|             ++.++.||.||+|+|.-.+
T Consensus       196 l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  253 (319)
T 3cty_A          196 YVQEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTG-------------EEKLIETDGVFIYVGLIPQ  253 (319)
T ss_dssp             HHHHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTC-------------CEEEECCSEEEECCCEEEC
T ss_pred             HHHHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCC-------------ceEEEecCEEEEeeCCccC
Confidence            4566778999999999999998765533 34443   33             2346999999999997544

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=94.01  E-value=0.13  Score=42.56  Aligned_cols=56  Identities=9%  Similarity=0.014  Sum_probs=39.3

Q ss_pred             hhHHHHH-CCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~-~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..++ .|++++++++|+++...++++ .|+..++.          .|++.++.+|.||+|+|.-.
T Consensus       185 ~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~----------~g~~~~i~~D~vi~a~G~~p  242 (310)
T 1fl2_A          185 LQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRV----------SGDIHNIELAGIFVQIGLLP  242 (310)
T ss_dssp             HHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETT----------TCCEEEEECSEEEECSCEEE
T ss_pred             HHHHHhhCCCeEEecCCceEEEEcCCCcEEEEEEEECC----------CCcEEEEEcCEEEEeeCCcc
Confidence            3445555 699999999999998766655 35554321          12345799999999999643

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=93.80  E-value=0.16  Score=46.39  Aligned_cols=50  Identities=18%  Similarity=0.106  Sum_probs=43.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +.+..++.|.++++++.|+.++..++++.|++.++.               ++.+|.|++|+|--
T Consensus       269 l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~---------------~~~~D~vLvAvGR~  318 (542)
T 4b1b_A          269 VKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKT---------------SELYDTVLYAIGRK  318 (542)
T ss_dssp             HHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECSCEE
T ss_pred             HHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCC---------------eEEEEEEEEccccc
Confidence            566778899999999999999999998888887663               68899999999964

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=93.74  E-value=0.054  Score=47.19  Aligned_cols=54  Identities=9%  Similarity=0.025  Sum_probs=42.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +.+..+++|++++++++|++|+.  ++  |++++|+               ++++|.||.|+|...+.+++.+
T Consensus       224 ~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~~g~---------------~~~~D~vi~a~G~~~~~~l~~~  277 (409)
T 3h8l_A          224 VASIYNQLGIKLVHNFKIKEIRE--HE--IVDEKGN---------------TIPADITILLPPYTGNPALKNS  277 (409)
T ss_dssp             HHHHHHHHTCEEECSCCEEEECS--SE--EEETTSC---------------EEECSEEEEECCEECCHHHHTS
T ss_pred             HHHHHHHCCCEEEcCCceEEECC--Ce--EEECCCC---------------EEeeeEEEECCCCCccHHHHhc
Confidence            45667788999999999999864  33  5666663               7999999999999887766544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=93.69  E-value=0.17  Score=42.94  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=40.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      |.+..++.|++|+++++|+++...++++ .|++.  +|             ++.++++|.||+|+|...+
T Consensus       208 l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  264 (360)
T 3ab1_A          208 VERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDG-------------SKWTVEADRLLILIGFKSN  264 (360)
T ss_dssp             SHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTC-------------CEEEEECSEEEECCCBCCS
T ss_pred             HHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCC-------------CeEEEeCCEEEECCCCCCC
Confidence            4455677899999999999999877754 35443  44             2337999999999997654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=93.69  E-value=0.13  Score=45.76  Aligned_cols=57  Identities=12%  Similarity=0.011  Sum_probs=41.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCc--eeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPE--LTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~--~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++..+++  +.|++.+..          .+++  .++++|.||+|+|.-.+
T Consensus       234 ~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~----------~g~~~g~~~~~D~vi~a~G~~p~  294 (478)
T 3dk9_A          234 CTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPG----------RLPVMTMIPDVDCLLWAIGRVPN  294 (478)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTT----------SCCEEEEEEEESEEEECSCEEES
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCC----------CCcccceEEEcCEEEEeeccccC
Confidence            456678899999999999999876554  567765421          0111  37999999999997543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=93.65  E-value=0.12  Score=42.97  Aligned_cols=49  Identities=12%  Similarity=0.123  Sum_probs=39.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.++++|++++.++ |+.+...++.|.| +.++.               ++.+|.||+|+|.+.
T Consensus        68 ~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~---------------~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           68 MHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNG---------------EYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSC---------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCC---------------EEEcCEEEECCCCCc
Confidence            4456778899999886 9999887777887 54552               799999999999754

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=93.65  E-value=0.063  Score=49.59  Aligned_cols=56  Identities=11%  Similarity=0.046  Sum_probs=39.9

Q ss_pred             HHHCCcEEEcCceEEEEEEeC----CeEE-EEec--CCcccccCCCCCCCCCceeEec-CEEEEcCCC-ChHHHHHHh
Q 026314            7 AENHGTTFSNNTSVIGGHLEG----NCMN-VYIS--ESKNLRNWDGVSPLQPELTLIP-KLVVNSAGL-SAPALAKRF   75 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~----~~~~-V~t~--~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~-wa~~l~~~~   75 (240)
                      +++.|++|++++.|+.|..++    +++. |+..  +|             +++++.| +.||+|||+ .+.+|+...
T Consensus       241 ~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g-------------~~~~v~A~k~VILaaG~~~sp~lL~~S  305 (587)
T 1gpe_A          241 YQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKA-------------VNFDVFAKHEVLLAAGSAISPLILEYS  305 (587)
T ss_dssp             TTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETT-------------EEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             hcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCC-------------cEEEEEecccEEEccCCCCCHHHHHhC
Confidence            345689999999999998763    2443 5442  33             3457899 899999998 466676554

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=93.53  E-value=0.12  Score=47.35  Aligned_cols=56  Identities=18%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH-HHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA-LAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~-l~~~~   75 (240)
                      +.+..+++|++|+++++|++|+..+++  |++.+|.               +++||.||+|+|...+. +++.+
T Consensus       234 l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~---------------~i~~D~Vi~a~G~~p~~~~l~~~  290 (588)
T 3ics_A          234 VHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGS---------------VIQTDMLILAIGVQPESSLAKGA  290 (588)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSC---------------EEECSEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCC---------------EEEcCEEEEccCCCCChHHHHhc
Confidence            556778899999999999999876554  5555663               79999999999987653 55554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.30  E-value=0.21  Score=41.76  Aligned_cols=60  Identities=12%  Similarity=-0.012  Sum_probs=40.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..++.|++++++++|++++..++...|++.   +|             ++.++.+|.||+|+|.-.+ .+++.+
T Consensus       197 l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~~~~l~~~  260 (335)
T 2zbw_A          197 LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQ-------------EELALEVDAVLILAGYITKLGPLANW  260 (335)
T ss_dssp             HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTC-------------CEEEEECSEEEECCCEEEECGGGGGS
T ss_pred             HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCC-------------ceEEEecCEEEEeecCCCCchHhhhc
Confidence            344556679999999999999874332235543   33             2237999999999998664 244433

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=93.25  E-value=0.091  Score=47.51  Aligned_cols=58  Identities=17%  Similarity=0.067  Sum_probs=40.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE--EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN--VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~--V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      +.+..+++|++|+++++|++++.  +.+.  +.+++|..           .+.+|.||.||.|+|.-.+.+..
T Consensus       278 ~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~~-----------~~~~i~ad~viwa~Gv~~~~~~~  337 (502)
T 4g6h_A          278 AQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGKI-----------TEETIPYGTLIWATGNKARPVIT  337 (502)
T ss_dssp             HHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSCE-----------EEEEEECSEEEECCCEECCHHHH
T ss_pred             HHHHHHhcceeeecCceEEEEeC--CceEEEEEecCccc-----------ceeeeccCEEEEccCCcCCHHHH
Confidence            34566788999999999999853  3343  44455521           12369999999999986655443

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=93.21  E-value=0.1  Score=46.35  Aligned_cols=52  Identities=21%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++++. + ++.|++++|             ++.++++|.||+|+|...+
T Consensus       218 l~~~l~~~gv~i~~~~~v~~i~~-~-~v~v~~~~G-------------~~~~i~~D~vv~a~G~~p~  269 (458)
T 1lvl_A          218 VAESLKKLGIALHLGHSVEGYEN-G-CLLANDGKG-------------GQLRLEADRVLVAVGRRPR  269 (458)
T ss_dssp             HHHHHHHHTCEEETTCEEEEEET-T-EEEEECSSS-------------CCCEECCSCEEECCCEEEC
T ss_pred             HHHHHHHCCCEEEECCEEEEEEe-C-CEEEEECCC-------------ceEEEECCEEEECcCCCcC
Confidence            45667788999999999999986 4 366664333             1227999999999997654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=93.12  E-value=0.21  Score=43.01  Aligned_cols=61  Identities=15%  Similarity=0.120  Sum_probs=40.9

Q ss_pred             hhhHHHHH-CCcEEEcCceEEEEEEeC-----------------C--eEE-EEec------CCcccccCCCCCCCCCcee
Q 026314            2 WVQGEAEN-HGTTFSNNTSVIGGHLEG-----------------N--CMN-VYIS------ESKNLRNWDGVSPLQPELT   54 (240)
Q Consensus         2 al~~~A~~-~Ga~i~~~~~V~~i~~~~-----------------~--~~~-V~t~------~g~~~~~~~~~~~~~~~~~   54 (240)
                      .|.+.+++ .|++++++++|+++...+                 +  ++. |.+.      .+.      ..+. .+..+
T Consensus       165 ~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~------~~~~-~d~~~  237 (344)
T 3jsk_A          165 TVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHD------DQSA-MDPNT  237 (344)
T ss_dssp             HHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSS------SSSC-CBCEE
T ss_pred             HHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCC------cccc-cCceE
Confidence            46677777 499999999999998765                 2  332 4331      110      0000 13457


Q ss_pred             EecCEEEEcCCCChH
Q 026314           55 LIPKLVVNSAGLSAP   69 (240)
Q Consensus        55 i~a~~VV~aaG~wa~   69 (240)
                      |+|+.||+|+|..+.
T Consensus       238 i~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          238 INAPVIISTTGHDGP  252 (344)
T ss_dssp             EECSEEEECCCSSSS
T ss_pred             EEcCEEEECCCCCch
Confidence            999999999998865

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=93.05  E-value=0.14  Score=45.90  Aligned_cols=50  Identities=12%  Similarity=0.180  Sum_probs=38.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++|+++++|++++. ++++ .|.+ ++.               +++||.||+|+|.-.+
T Consensus       242 l~~~l~~~GV~i~~~~~v~~i~~-~~~v~~v~~-~g~---------------~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          242 MAKNMEEHGIQLAFGETVKEVAG-NGKVEKIIT-DKN---------------EYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHTTTCEEEETCCEEEEEC-SSSCCEEEE-SSC---------------EEECSEEEECCCEEEC
T ss_pred             HHHHHHhCCeEEEeCCEEEEEEc-CCcEEEEEE-CCc---------------EEECCEEEECCCCCcC
Confidence            45567788999999999999986 4444 3666 342               7999999999997543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=92.99  E-value=0.047  Score=51.32  Aligned_cols=53  Identities=15%  Similarity=0.036  Sum_probs=37.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.++++|++|+++++|++|+.  ++..++....            ++..++.||.||+|+|...+
T Consensus       573 l~~~l~~~GV~i~~~~~V~~i~~--~~~~v~~~~~------------~~~~~i~aD~VV~A~G~~p~  625 (690)
T 3k30_A          573 IQRRLIENGVARVTDHAVVAVGA--GGVTVRDTYA------------SIERELECDAVVMVTARLPR  625 (690)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEET--TEEEEEETTT------------CCEEEEECSEEEEESCEEEC
T ss_pred             HHHHHHHCCCEEEcCcEEEEEEC--CeEEEEEccC------------CeEEEEECCEEEECCCCCCC
Confidence            56677889999999999999874  3444442111            01227999999999998653

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=92.90  E-value=0.18  Score=47.15  Aligned_cols=50  Identities=14%  Similarity=0.099  Sum_probs=37.8

Q ss_pred             HCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            9 NHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ..+.+|+++++|+.|...+++++|++.++.         +.+...+++||+||+|..+.
T Consensus       408 a~~l~I~l~~~V~~I~~~~~~v~V~~~~~~---------~~~~~~~~~Ad~VI~tvP~~  457 (662)
T 2z3y_A          408 AEGLDIKLNTAVRQVRYTASGCEVIAVNTR---------STSQTFIYKCDAVLCTLPLG  457 (662)
T ss_dssp             TTTCEEETTEEEEEEEEETTEEEEEEEESS---------CTTCEEEEEESEEEECCCHH
T ss_pred             HhcCceecCCeEEEEEECCCcEEEEEeecc---------cCCCCeEEEeCEEEECCCHH
Confidence            347799999999999999999988876520         01112379999999999854

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=92.79  E-value=0.22  Score=44.53  Aligned_cols=56  Identities=21%  Similarity=0.076  Sum_probs=40.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++++++++|+.++..+ +.+.|+..+..          .+++.++.+|.||+|+|.-.
T Consensus       231 l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~----------~g~~~~~~~D~vi~a~G~~p  287 (488)
T 3dgz_A          231 VTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHA----------SGKEDTGTFDTVLWAIGRVP  287 (488)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETT----------TTEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCC----------CCeeEEEECCEEEEcccCCc
Confidence            4566778999999999999998754 44666554421          12234589999999999643

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=92.26  E-value=0.31  Score=45.56  Aligned_cols=76  Identities=7%  Similarity=-0.016  Sum_probs=48.7

Q ss_pred             hhhHHHHHCC---cEEEcCceEEEEEEeC--------CeEEEEecCCccccc----------------------------
Q 026314            2 WVQGEAENHG---TTFSNNTSVIGGHLEG--------NCMNVYISESKNLRN----------------------------   42 (240)
Q Consensus         2 al~~~A~~~G---a~i~~~~~V~~i~~~~--------~~~~V~t~~g~~~~~----------------------------   42 (240)
                      .|.+.++++|   ++|+.+++|++++..+        ++++|+..+....+.                            
T Consensus       124 ~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~  203 (665)
T 1pn0_A          124 RILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANY  203 (665)
T ss_dssp             HHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHHHHHHHHTSC
T ss_pred             HHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEecccccccccccccccccccccccccccccccccc
Confidence            3667778877   8999999999998764        357665432100000                            


Q ss_pred             -CCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCC
Q 026314           43 -WDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLD   79 (240)
Q Consensus        43 -~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~   79 (240)
                       .......|.+.+++||.||-|-|.+|. +.+.+ +.+
T Consensus       204 ~~~~~~~~G~~~~i~A~~VVGADG~~S~-VR~~l-g~~  239 (665)
T 1pn0_A          204 RLPEGKEAGEIETVHCKYVIGCDGGHSW-VRRTL-GFE  239 (665)
T ss_dssp             CCSTTCCTTCEEEEEEEEEEECCCTTCH-HHHHH-TCC
T ss_pred             cccccCCCCceEEEEeCEEEeccCCCCH-HHHhc-CCC
Confidence             000001244567999999999999875 66777 444

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=92.13  E-value=0.47  Score=39.10  Aligned_cols=52  Identities=13%  Similarity=0.049  Sum_probs=38.0

Q ss_pred             hHHHH-HCCcEEEcCceEEEEEEeCCeE-EEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAE-NHGTTFSNNTSVIGGHLEGNCM-NVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~-~~Ga~i~~~~~V~~i~~~~~~~-~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+... +.|++|+++++|+++...++++ .|+..   +|             ++.++.+|.||+|+|.-.
T Consensus       185 ~~~l~~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p  241 (311)
T 2q0l_A          185 LEHAKNNDKIEFLTPYVVEEIKGDASGVSSLSIKNTATN-------------EKRELVVPGFFIFVGYDV  241 (311)
T ss_dssp             HHHHHTCTTEEEETTEEEEEEEEETTEEEEEEEEETTTC-------------CEEEEECSEEEECSCEEE
T ss_pred             HHHHhhCCCeEEEeCCEEEEEECCCCcEeEEEEEecCCC-------------ceEEEecCEEEEEecCcc
Confidence            34444 4799999999999998776654 35544   33             234699999999999754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=92.10  E-value=0.22  Score=42.66  Aligned_cols=51  Identities=10%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             HCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            9 NHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ..+.+|+++++|++++..+ ++++|++++|.               +++||.||-|=|.+|. +.+.+
T Consensus       121 ~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~---------------~~~adlvVgADG~~S~-vR~~l  172 (412)
T 4hb9_A          121 GLANTIQWNKTFVRYEHIENGGIKIFFADGS---------------HENVDVLVGADGSNSK-VRKQY  172 (412)
T ss_dssp             TCTTTEECSCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECCCTTCH-HHHHH
T ss_pred             hccceEEEEEEEEeeeEcCCCeEEEEECCCC---------------EEEeeEEEECCCCCcc-hHHHh
Confidence            3467899999999998765 46889998884               7999999999999874 45555

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=92.09  E-value=0.27  Score=41.66  Aligned_cols=50  Identities=8%  Similarity=0.151  Sum_probs=39.2

Q ss_pred             HHHHCC-cEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeE-ecCEEEEcCCCChHH
Q 026314            6 EAENHG-TTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTL-IPKLVVNSAGLSAPA   70 (240)
Q Consensus         6 ~A~~~G-a~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~aaG~wa~~   70 (240)
                      ..++.| ++++++++|+.|+..++.+.|++.+|.               ++ .+|.||.|+|.-.+.
T Consensus       223 ~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~---------------~~~~~d~vi~a~G~~~~~  274 (369)
T 3d1c_A          223 VIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQ---------------SVHTPHEPILATGFDATK  274 (369)
T ss_dssp             HHHTTCCEEEECSCCEEEEEEETTEEEEEESSSC---------------CEEESSCCEECCCBCGGG
T ss_pred             HHhhCCcEEEecCcEEEEEEecCCceEEEecCCe---------------EeccCCceEEeeccCCcc
Confidence            335566 999999999999877777778887773               35 469999999986654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.02  E-value=0.074  Score=47.45  Aligned_cols=55  Identities=16%  Similarity=0.163  Sum_probs=41.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|++...+.|++|+++++|++|..+++++  ++.+|.               +++||+||.+.-  .+.|.+++
T Consensus       227 ~l~~~l~~~g~~i~~~~~V~~I~~~~~~v--~~~~G~---------------~~~ad~vI~t~P--~~~l~~~l  281 (513)
T 4gde_A          227 AVANTLPKEKTRFGEKGKVTKVNANNKTV--TLQDGT---------------TIGYKKLVSTMA--VDFLAEAM  281 (513)
T ss_dssp             HHHHTSCGGGEEESGGGCEEEEETTTTEE--EETTSC---------------EEEEEEEEECSC--HHHHHHHT
T ss_pred             HHHHHHHhcCeeeecceEEEEEEccCCEE--EEcCCC---------------EEECCEEEECCC--HHHHHHhc
Confidence            34555567799999999999998877654  466663               799999998875  45666655

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=91.92  E-value=0.34  Score=41.33  Aligned_cols=25  Identities=16%  Similarity=-0.060  Sum_probs=20.9

Q ss_pred             hhhHHHHHC-CcEEEcCceEEEEEEe
Q 026314            2 WVQGEAENH-GTTFSNNTSVIGGHLE   26 (240)
Q Consensus         2 al~~~A~~~-Ga~i~~~~~V~~i~~~   26 (240)
                      .|.+.+.++ |++++++++|+++..+
T Consensus       151 ~L~~~a~~~~GV~i~~~~~V~~Ll~~  176 (326)
T 2gjc_A          151 TVLSKVLQLPNVKLFNATCVEDLVTR  176 (326)
T ss_dssp             HHHHHHHTSTTEEEETTEEEEEEEEC
T ss_pred             HHHHHHHHhcCcEEEecceeeeeeec
Confidence            356667775 9999999999999876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=91.76  E-value=0.27  Score=43.23  Aligned_cols=47  Identities=15%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.++++|++++.+++|+.+...+.  .|++++|.               ++++|.||+|+|...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~---------------~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGR---------------ALDYDRLVLATGGRP  114 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEEE
T ss_pred             HHHHhCCCEEEeCCEEEEEECCCC--EEEECCCC---------------EEECCEEEEcCCCCc
Confidence            556788999999999999987654  46666662               799999999999743

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.67  E-value=0.14  Score=45.64  Aligned_cols=50  Identities=10%  Similarity=0.021  Sum_probs=36.7

Q ss_pred             HHCC-cEEEcCceEEEEEEeCCe------EEEEecCCcccccCCCCCCCCCc-eeEecCEEEEcCCCCh
Q 026314            8 ENHG-TTFSNNTSVIGGHLEGNC------MNVYISESKNLRNWDGVSPLQPE-LTLIPKLVVNSAGLSA   68 (240)
Q Consensus         8 ~~~G-a~i~~~~~V~~i~~~~~~------~~V~t~~g~~~~~~~~~~~~~~~-~~i~a~~VV~aaG~wa   68 (240)
                      ++.| .+|+++++|++|+..+++      |.|++.++.           |.. .+++||+||+|+.++.
T Consensus       251 ~~l~~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~-----------g~~~~~~~ad~VI~a~p~~~  308 (504)
T 1sez_A          251 KDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPH-----------KRQSEEESFDAVIMTAPLCD  308 (504)
T ss_dssp             TTSCTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSS-----------SSCBCCCEESEEEECSCHHH
T ss_pred             hhcccceEEcCCeEEEEEecCCCCcccceEEEEEcCCC-----------CccceeEECCEEEECCCHHH
Confidence            4557 799999999999988876      777664321           111 2689999999999754

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=91.54  E-value=0.36  Score=43.24  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=39.0

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +..+++ ++|+++++|+.++..++++.|++.  +|             ++.++++|.||+|+|...+
T Consensus       223 ~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G-------------~~~~i~~D~Vi~a~G~~p~  275 (492)
T 3ic9_A          223 KTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSG-------------QKTTESFQYVLAATGRKAN  275 (492)
T ss_dssp             HHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTC-------------CEEEEEESEEEECSCCEES
T ss_pred             HHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCC-------------ceEEEECCEEEEeeCCccC
Confidence            344455 999999999999988777777664  33             1237999999999997543

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=91.51  E-value=0.15  Score=44.03  Aligned_cols=53  Identities=19%  Similarity=0.310  Sum_probs=41.7

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++++++++|++++  .+  .|++++|                ++++|.||+|+|...+ .+++.+
T Consensus       189 l~~~l~~~gV~i~~~~~v~~i~--~~--~v~~~~g----------------~i~~D~vi~a~G~~p~~~ll~~~  242 (367)
T 1xhc_A          189 IKDMLEETGVKFFLNSELLEAN--EE--GVLTNSG----------------FIEGKVKICAIGIVPNVDLARRS  242 (367)
T ss_dssp             HHHHHHHTTEEEECSCCEEEEC--SS--EEEETTE----------------EEECSCEEEECCEEECCHHHHHT
T ss_pred             HHHHHHHCCCEEEcCCEEEEEE--ee--EEEECCC----------------EEEcCEEEECcCCCcCHHHHHhC
Confidence            4566788999999999999987  23  3666666                5999999999998765 366665

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=91.46  E-value=0.55  Score=39.06  Aligned_cols=53  Identities=17%  Similarity=-0.011  Sum_probs=36.8

Q ss_pred             hHHHHH-CCcEEEcCceEEEEEEeCCeEEEEec---CCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            4 QGEAEN-HGTTFSNNTSVIGGHLEGNCMNVYIS---ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~-~Ga~i~~~~~V~~i~~~~~~~~V~t~---~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+.+.+ .|++|+++++|+++...+....|+..   +|             ++.++.+|.||+|+|.-.+
T Consensus       194 ~~~l~~~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p~  250 (325)
T 2q7v_A          194 QARAFANPKMKFIWDTAVEEIQGADSVSGVKLRNLKTG-------------EVSELATDGVFIFIGHVPN  250 (325)
T ss_dssp             HHHHHTCTTEEEECSEEEEEEEESSSEEEEEEEETTTC-------------CEEEEECSEEEECSCEEES
T ss_pred             HHHHHhcCCceEecCCceEEEccCCcEEEEEEEECCCC-------------cEEEEEcCEEEEccCCCCC
Confidence            344544 59999999999999865332245543   33             2346999999999997543

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=91.33  E-value=0.15  Score=44.16  Aligned_cols=53  Identities=15%  Similarity=0.043  Sum_probs=45.5

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +++|++++++++|+.++..++...|++++|+               ++++|.|+.|+|.-++.+++..
T Consensus       213 ~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~---------------~i~~D~vi~~~g~~~~~~~~~~  265 (401)
T 3vrd_B          213 ENALIEWHPGPDAAVVKTDTEAMTVETSFGE---------------TFKAAVINLIPPQRAGKIAQSA  265 (401)
T ss_dssp             TTCSEEEECTTTTCEEEEETTTTEEEETTSC---------------EEECSEEEECCCEEECHHHHHT
T ss_pred             HhcCcEEEeCceEEEEEecccceEEEcCCCc---------------EEEeeEEEEecCcCCchhHhhc
Confidence            4679999999999999888777778888884               7999999999998887777766

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=91.08  E-value=0.34  Score=46.78  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=37.2

Q ss_pred             CCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314           10 HGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.+|+++++|+.|...+++|+|++.+..         +.+...+++||+||+|.-++.
T Consensus       580 ~~l~I~Lnt~V~~I~~~~~gV~V~~~~~~---------~~~~g~~i~AD~VIvTvPl~v  629 (852)
T 2xag_A          580 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---------STSQTFIYKCDAVLCTLPLGV  629 (852)
T ss_dssp             TTCCEECSEEEEEEEEETTEEEEEEEESS---------STTCEEEEEESEEEECCCHHH
T ss_pred             hCCCEEeCCeEEEEEEcCCcEEEEEeecc---------cCCCCeEEECCEEEECCCHHH
Confidence            36789999999999999999988875410         001123799999999987543

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.02  E-value=0.48  Score=42.99  Aligned_cols=50  Identities=10%  Similarity=-0.028  Sum_probs=38.2

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ..+++.|++++.+++|+++...++.+.+.....            ++..++++|+||+|+|.
T Consensus        66 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~------------g~~~~~~~d~lviAtG~  115 (565)
T 3ntd_A           66 SFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLD------------GSEYQESYDTLLLSPGA  115 (565)
T ss_dssp             HHHHHHCCEEETTEEEEEEETTTTEEEEEETTT------------CCEEEEECSEEEECCCE
T ss_pred             HHHHhcCcEEEECCEEEEEECCCCEEEEEecCC------------CCeEEEECCEEEECCCC
Confidence            344568999999999999998888777665221            12336999999999997

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=90.90  E-value=0.5  Score=41.60  Aligned_cols=50  Identities=16%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +..+++|++++.+++|+.+...++.+.+.+ .+|             ++.++++|+||+|+|.+
T Consensus        64 ~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g-------------~~~~~~~d~lviAtG~~  114 (447)
T 1nhp_A           64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSG-------------EERVENYDKLIISPGAV  114 (447)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCEE
T ss_pred             HHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCC-------------ceEEEeCCEEEEcCCCC
Confidence            456678999999999999987777777665 233             12358999999999964

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.90  E-value=0.31  Score=39.76  Aligned_cols=54  Identities=7%  Similarity=0.105  Sum_probs=40.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++|++++. ++|+++...+   .|++++|.               ++.+|.||.|+|...+ .+++.+
T Consensus       180 ~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~---------------~~~~D~vi~a~G~~p~~~~~~~~  234 (297)
T 3fbs_A          180 QHALLAARGVRVET-TRIREIAGHA---DVVLADGR---------------SIALAGLFTQPKLRITVDWIEKL  234 (297)
T ss_dssp             HHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSC---------------EEEESEEEECCEEECCCSCHHHH
T ss_pred             HHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCC---------------EEEEEEEEEccCcccCchhHHhc
Confidence            45667889999996 9999986432   67777763               7999999999997532 455555

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=90.77  E-value=0.59  Score=42.75  Aligned_cols=51  Identities=8%  Similarity=0.057  Sum_probs=39.5

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ...+++.|.+++++++|+++...++.+.+.+...            +++.++.+|.||+|+|.
T Consensus       100 ~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~------------g~~~~~~~d~lviAtG~  150 (588)
T 3ics_A          100 ERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTT------------NETYNEAYDVLILSPGA  150 (588)
T ss_dssp             HHHHHHTTCEEECSEEEEEEETTTTEEEEEETTT------------CCEEEEECSEEEECCCE
T ss_pred             HHHHHhcCcEEEECCEEEEEECCCCEEEEeecCC------------CCEEEEeCCEEEECCCC
Confidence            3456688999999999999998888777765222            12346899999999996

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=90.65  E-value=0.29  Score=43.82  Aligned_cols=50  Identities=12%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+.++++|++++.+++|+.+...++.+.|.+ ++.             ..++++|+||+|+|.+
T Consensus        99 ~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~-~g~-------------~~~~~~d~lviAtG~~  148 (490)
T 2bc0_A           99 KEELESLGAKVYMESPVQSIDYDAKTVTALV-DGK-------------NHVETYDKLIFATGSQ  148 (490)
T ss_dssp             HHHHHHTTCEEETTCCEEEEETTTTEEEEEE-TTE-------------EEEEECSEEEECCCEE
T ss_pred             HHHHHhCCCEEEeCCEEEEEECCCCEEEEEe-CCc-------------EEEEECCEEEECCCCC
Confidence            3456778999999999999987777777652 221             1269999999999964

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=90.52  E-value=0.34  Score=42.68  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.+..+++ ++++++++|++++..+ ++. +.++.+                +++||.||+|+|...+ .+++.+
T Consensus       196 l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~~g~----------------~i~~D~Vv~a~G~~p~~~l~~~~  252 (449)
T 3kd9_A          196 LEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVTDAG----------------EYKAELVILATGIKPNIELAKQL  252 (449)
T ss_dssp             HHHHHTTT-SEEEESCCEEEEECSS-SCCEEEETTE----------------EEECSEEEECSCEEECCHHHHHT
T ss_pred             HHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEeCCC----------------EEECCEEEEeeCCccCHHHHHhC
Confidence            34555667 9999999999997654 443 555433                7999999999999854 566666

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=90.28  E-value=0.25  Score=43.45  Aligned_cols=43  Identities=16%  Similarity=0.139  Sum_probs=34.3

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+++|++++. .+|++|..++.  +|++++|.               ++++|++|+|+|.-
T Consensus        66 ~~~~gv~~i~-~~v~~Id~~~~--~V~~~~g~---------------~i~YD~LViAtG~~  108 (430)
T 3hyw_A           66 LPKFNIEFIN-EKAESIDPDAN--TVTTQSGK---------------KIEYDYLVIATGPK  108 (430)
T ss_dssp             GGGGTEEEEC-SCEEEEETTTT--EEEETTCC---------------EEECSEEEECCCCE
T ss_pred             HHHCCcEEEE-eEEEEEECCCC--EEEECCCC---------------EEECCEEEEeCCCC
Confidence            4567999986 48999987665  46777773               79999999999973

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=90.24  E-value=0.6  Score=41.15  Aligned_cols=52  Identities=17%  Similarity=0.086  Sum_probs=38.8

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+..++.|++++.+++|+.+...++.+.+.+.++            ++..++++|+||+|+|..
T Consensus        65 ~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~------------g~~~~~~~d~lviAtGs~  116 (452)
T 2cdu_A           65 PEELSNLGANVQMRHQVTNVDPETKTIKVKDLIT------------NEEKTEAYDKLIMTTGSK  116 (452)
T ss_dssp             HHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTT------------CCEEEEECSEEEECCCEE
T ss_pred             HHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCC------------CceEEEECCEEEEccCCC
Confidence            3456788999999999999987777777765221            011279999999999964

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=90.19  E-value=0.76  Score=38.23  Aligned_cols=53  Identities=13%  Similarity=0.063  Sum_probs=36.8

Q ss_pred             HHHCCcEEEcCceEEEEEEeCC--eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            7 AENHGTTFSNNTSVIGGHLEGN--CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~--~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .++.|++|+++++|++++..++  ++. |++.+..          .|++.++.||.||+|+|.-.+
T Consensus       205 ~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~----------~g~~~~i~~D~vi~a~G~~p~  260 (333)
T 1vdc_A          205 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVV----------TGDVSDLKVSGLFFAIGHEPA  260 (333)
T ss_dssp             HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETT----------TCCEEEEECSEEEECSCEEES
T ss_pred             HhCCCeeEecCCceEEEeCCCCccceeeEEEEecC----------CCceEEEecCEEEEEeCCccc
Confidence            3568999999999999987664  442 4443210          012347999999999997543

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=90.18  E-value=0.45  Score=41.81  Aligned_cols=49  Identities=16%  Similarity=0.219  Sum_probs=38.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+.+++.|++++. .+|+.+...++  .|+++++.               ++.+|+||+|+|....
T Consensus        65 l~~~~~~~gv~~~~-~~v~~id~~~~--~V~~~~g~---------------~i~~d~lviAtG~~~~  113 (437)
T 3sx6_A           65 IRHYVERKGIHFIA-QSAEQIDAEAQ--NITLADGN---------------TVHYDYLMIATGPKLA  113 (437)
T ss_dssp             CHHHHHTTTCEEEC-SCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCCEEC
T ss_pred             HHHHHHHCCCEEEE-eEEEEEEcCCC--EEEECCCC---------------EEECCEEEECCCCCcC
Confidence            44566778999984 79999987655  56677662               6999999999998553

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=90.12  E-value=0.63  Score=40.80  Aligned_cols=57  Identities=7%  Similarity=-0.003  Sum_probs=42.8

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .+..+++|+++++++.|++++  ++++.+++.+|             .+.++.||.||.|+|.-.+.+....
T Consensus       207 ~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g-------------~~~~i~~d~vi~~~G~~~~~~~~~~  263 (430)
T 3hyw_A          207 EDLFAERNIDWIANVAVKAIE--PDKVIYEDLNG-------------NTHEVPAKFTMFMPSFQGPEVVASA  263 (430)
T ss_dssp             HHHHHHTTCEEECSCEEEEEC--SSEEEEECTTS-------------CEEEEECSEEEEECEEECCHHHHTT
T ss_pred             HHHHHhCCeEEEeCceEEEEe--CCceEEEeeCC-------------CceEeecceEEEeccCCCchHHHhc
Confidence            345577899999999999985  45566665444             2347999999999998777776655

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=90.00  E-value=0.58  Score=41.30  Aligned_cols=50  Identities=14%  Similarity=0.093  Sum_probs=39.3

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+..++.|.+++.+++|+++...++.+.++...+              ..++++|.+|+|+|..
T Consensus        65 ~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~--------------~~~~~~d~lviAtG~~  114 (452)
T 3oc4_A           65 EEELRRQKIQLLLNREVVAMDVENQLIAWTRKEE--------------QQWYSYDKLILATGAS  114 (452)
T ss_dssp             HHHHHHTTEEEECSCEEEEEETTTTEEEEEETTE--------------EEEEECSEEEECCCCC
T ss_pred             HHHHHHCCCEEEECCEEEEEECCCCEEEEEecCc--------------eEEEEcCEEEECCCcc
Confidence            4566789999999999999998888787752211              1279999999999974

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=89.51  E-value=0.58  Score=40.52  Aligned_cols=52  Identities=10%  Similarity=0.079  Sum_probs=37.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.+ +|+.+...+..+.  +.++.           +++.++++|.||+|+|...
T Consensus        62 ~~~~~~~~gv~~~~~-~v~~i~~~~~~V~--~~~g~-----------~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           62 LSEALPEKGIQFQEG-TVEKIDAKSSMVY--YTKPD-----------GSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             HHHHTGGGTCEEEEC-EEEEEETTTTEEE--EECTT-----------SCEEEEECSEEEECCCCEE
T ss_pred             HHHHHhhCCeEEEEe-eEEEEeCCCCEEE--EccCC-----------cccceeeCCEEEECCCCCc
Confidence            445667789999987 9999987666444  44441           1234599999999999844

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=89.16  E-value=1.1  Score=40.43  Aligned_cols=54  Identities=19%  Similarity=0.127  Sum_probs=37.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC----CeEEEE--ecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG----NCMNVY--ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~----~~~~V~--t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..++.|++|+++++|+.++..+    +.+.|+  ..++            +++.++.+|.||+|+|.-.
T Consensus       256 ~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g------------~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          256 IGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNS------------EEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSS------------SCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCC------------cEEEEEECCEEEEecCCcc
Confidence            4456778999999999998887643    345543  3333            1234688999999999643

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=88.91  E-value=0.75  Score=40.94  Aligned_cols=47  Identities=9%  Similarity=0.029  Sum_probs=36.5

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++.|++++.+++|+.+...++.+.+.+ ++|             ++.++++|+||+|+|..
T Consensus       104 ~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g-------------~~~~~~~d~lviAtG~~  151 (480)
T 3cgb_A          104 DKYGIDAKVRHEVTKVDTEKKIVYAEHTKTK-------------DVFEFSYDRLLIATGVR  151 (480)
T ss_dssp             HTTCCEEESSEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCEE
T ss_pred             hhcCCEEEeCCEEEEEECCCCEEEEEEcCCC-------------ceEEEEcCEEEECCCCc
Confidence            445999999999999987777777765 334             12369999999999964

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=88.90  E-value=0.64  Score=40.48  Aligned_cols=46  Identities=11%  Similarity=0.120  Sum_probs=36.9

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +..+++|++++.+++|+.+.....  .|++++|.               ++.+|+||+|+|..
T Consensus        65 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---------------~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           65 DWYGEARIDMLTGPEVTALDVQTR--TISLDDGT---------------TLSADAIVIATGSR  110 (410)
T ss_dssp             THHHHTTCEEEESCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEE
T ss_pred             HHHHHCCCEEEeCCEEEEEECCCC--EEEECCCC---------------EEECCEEEEccCCc
Confidence            345678999999999999976654  56666663               79999999999964

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.69  E-value=0.61  Score=40.05  Aligned_cols=44  Identities=11%  Similarity=-0.057  Sum_probs=34.1

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +..+++|++++.+++|+.+....  +.|+ .++.               ++++|+||+|+|.
T Consensus        68 ~~~~~~~v~~~~g~~v~~id~~~--~~V~-~~g~---------------~~~~d~lViATGs  111 (367)
T 1xhc_A           68 DWYRKRGIEIRLAEEAKLIDRGR--KVVI-TEKG---------------EVPYDTLVLATGA  111 (367)
T ss_dssp             HHHHHHTEEEECSCCEEEEETTT--TEEE-ESSC---------------EEECSEEEECCCE
T ss_pred             HHHHhCCcEEEECCEEEEEECCC--CEEE-ECCc---------------EEECCEEEECCCC
Confidence            44567899999999999987654  3455 3442               7999999999996

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=88.63  E-value=0.56  Score=39.30  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=34.3

Q ss_pred             HHCCcEEEcCceEEEEEEeCCe--EEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNC--MNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ++.|++++++++|++++..++.  +.+... +|             ++.++.+|.||+|+|.-.
T Consensus       202 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g-------------~~~~i~~D~vi~a~G~~p  252 (335)
T 2a87_A          202 NNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTG-------------AETTLPVTGVFVAIGHEP  252 (335)
T ss_dssp             HCTTEEEECSEEEEEEECSSSCCEEEEEEETTS-------------CCEEECCSCEEECSCEEE
T ss_pred             ccCCcEEEeCceeEEEecCCcEeEEEEEEcCCC-------------ceEEeecCEEEEccCCcc
Confidence            5689999999999999866532  333321 23             223799999999999643

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=88.62  E-value=0.69  Score=37.95  Aligned_cols=47  Identities=15%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +.+.+++.|++++.+ +|+++ ..+  +.|.|+...+              . ++.+|.||+|+|.
T Consensus        68 ~~~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~--------------~-~~~~d~lvlAtG~  116 (315)
T 3r9u_A           68 WSEQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGG--------------K-TELAKAVIVCTGS  116 (315)
T ss_dssp             HHHHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTS--------------C-EEEEEEEEECCCE
T ss_pred             HHHHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecC--------------C-EEEeCEEEEeeCC
Confidence            456677789999987 99999 777  6788533323              1 6999999999997

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=88.60  E-value=0.43  Score=42.39  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=36.1

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCcee------EecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELT------LIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~------i~a~~VV~aaG~wa   68 (240)
                      .+.+++.|++++.++.+..   ..+.+.|++.+|.             +.+      +++|+||+|+|.+.
T Consensus       103 ~~~~~~~gv~~~~g~~~~~---~~~~v~V~~~~G~-------------~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A          103 ELLFKKNKVTYYKGNGSFE---DETKIRVTPVDGL-------------EGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             HHHHHHTTCEEEESEEEES---SSSEEEEECCTTC-------------TTCCSSCEEEEEEEEEECCCEEE
T ss_pred             HHHHHhCCCEEEEEEEEEc---cCCeEEEEecCCC-------------cccccccceEEeCEEEECcCCCC
Confidence            3456778999999988752   4556788876551             114      99999999999865

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=88.57  E-value=0.9  Score=41.01  Aligned_cols=54  Identities=9%  Similarity=0.021  Sum_probs=38.3

Q ss_pred             hHHHHH-CCcEEEcCceEEEEEEeCCeE-EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            4 QGEAEN-HGTTFSNNTSVIGGHLEGNCM-NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         4 ~~~A~~-~Ga~i~~~~~V~~i~~~~~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+..++ .|++++++++|+.|...++++ .|+..++.          .|++.++.+|.||+|+|.-
T Consensus       397 ~~~l~~~~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~----------~g~~~~i~~D~vi~a~G~~  452 (521)
T 1hyu_A          397 QDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRV----------SGDIHSVALAGIFVQIGLL  452 (521)
T ss_dssp             HHHHTTCTTEEEECSEEEEEEEECSSSEEEEEEEETT----------TCCEEEEECSEEEECCCEE
T ss_pred             HHHHhcCCCcEEEeCCEEEEEEcCCCcEEEEEEEeCC----------CCceEEEEcCEEEECcCCC
Confidence            444555 599999999999998766655 35554321          1234579999999999953

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=88.45  E-value=0.96  Score=42.18  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=37.4

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+..+++|++++++++|+.+.  ++++.++ .+|+             +.++.||.||.|+|.-.+
T Consensus       580 ~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~-------------~~~i~~D~Vi~a~G~~p~  629 (671)
T 1ps9_A          580 RTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGE-------------TQVLAVDNVVICAGQEPN  629 (671)
T ss_dssp             HHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTE-------------EEEECCSEEEECCCEEEC
T ss_pred             HHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCe-------------EEEEeCCEEEECCCcccc
Confidence            455678899999999999986  4456554 3441             237999999999997543

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=88.09  E-value=0.5  Score=42.30  Aligned_cols=50  Identities=10%  Similarity=0.154  Sum_probs=36.1

Q ss_pred             HHHCCc-EEEcC--ceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            7 AENHGT-TFSNN--TSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         7 A~~~Ga-~i~~~--~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      |++.+. +|+++  ++|++|.+++++|.  +.+|.               +++||+||+|+.++  .+.+++
T Consensus       223 a~~l~~~~i~~~~~~~V~~I~~~~~~v~--~~~G~---------------~~~ad~VI~a~p~~--~~~~ll  275 (484)
T 4dsg_A          223 KEKLPSEKLTFNSGFQAIAIDADAKTIT--FSNGE---------------VVSYDYLISTVPFD--NLLRMT  275 (484)
T ss_dssp             HHHSCGGGEEECGGGCEEEEETTTTEEE--ETTSC---------------EEECSEEEECSCHH--HHHHHE
T ss_pred             HhhhhhCeEEECCCceeEEEEecCCEEE--ECCCC---------------EEECCEEEECCCHH--HHHHHh
Confidence            344554 89999  57999998888664  45552               79999999999754  444544

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=88.07  E-value=0.87  Score=37.60  Aligned_cols=47  Identities=9%  Similarity=0.135  Sum_probs=32.7

Q ss_pred             HHHHCCcEEEcCceEEEEEEeC-CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            6 EAENHGTTFSNNTSVIGGHLEG-NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~-~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      .+.+.+...+....++.+...+ +.++|.+.+|.               ++++|+||+|+|..
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~---------------~~~a~~liiATGs~  116 (304)
T 4fk1_A           69 EVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHT---------------KYLAERVLLATGMQ  116 (304)
T ss_dssp             HHTTSTTEEEEECCEEEEEECTTSCEEEEETTCC---------------EEEEEEEEECCCCE
T ss_pred             HHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCC---------------EEEeCEEEEccCCc
Confidence            4455555444456666665554 45778887773               79999999999974

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=88.06  E-value=0.86  Score=40.14  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=38.1

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ..+++|++++.+++|+.|......+.+.....            ++..++.+|++|+|+|..
T Consensus        66 ~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~------------~~~~~~~yd~lVIATGs~  115 (437)
T 4eqs_A           66 FYDRKQITVKTYHEVIAINDERQTVSVLNRKT------------NEQFEESYDKLILSPGAS  115 (437)
T ss_dssp             HHHHHCCEEEETEEEEEEETTTTEEEEEETTT------------TEEEEEECSEEEECCCEE
T ss_pred             HHHhcCCEEEeCCeEEEEEccCcEEEEEeccC------------CceEEEEcCEEEECCCCc
Confidence            34678999999999999987777666654332            223479999999999974

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=87.92  E-value=0.85  Score=40.39  Aligned_cols=46  Identities=13%  Similarity=-0.041  Sum_probs=33.7

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEec-CCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYIS-ESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~-~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ++.|.+++.+++|+.+...++.+.+... +|             +...+.+|.||+|+|.
T Consensus        77 ~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g-------------~~~~~~~d~lviAtG~  123 (472)
T 3iwa_A           77 INKDVEALVETRAHAIDRAAHTVEIENLRTG-------------ERRTLKYDKLVLALGS  123 (472)
T ss_dssp             ----CEEECSEEEEEEETTTTEEEEEETTTC-------------CEEEEECSEEEECCCE
T ss_pred             hhcCcEEEECCEEEEEECCCCEEEEeecCCC-------------CEEEEECCEEEEeCCC
Confidence            3579999999999999888887776652 22             2336999999999996

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=87.92  E-value=1.3  Score=41.12  Aligned_cols=56  Identities=9%  Similarity=-0.043  Sum_probs=38.8

Q ss_pred             CCcEEEcCceEEEEEEeCC--eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314           10 HGTTFSNNTSVIGGHLEGN--CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus        10 ~Ga~i~~~~~V~~i~~~~~--~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      .|++|++++.|++|..+++  ++. |+..+..          .|++.++.||.||+|+|...+ +++...
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~----------~g~~~~i~A~~VIlaaG~~~s~~lL~~s  332 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLI----------SGDRFEIKADVYVLTAGAVHNTQLLVNS  332 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETT----------TCCEEEECEEEEEECSCTTHHHHHHHTT
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcC----------CCcEEEEECCEEEEcCCCcCCHHHHHhc
Confidence            4899999999999988653  443 5543310          134567999999999998654 455443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=87.73  E-value=0.52  Score=41.06  Aligned_cols=44  Identities=14%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++++|++++.+++|+.+...+.  +|+++++.               ++++|+||+|+|..
T Consensus        69 ~~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~---------------~~~~d~lviAtG~~  112 (408)
T 2gqw_A           69 KRAPEVEWLLGVTAQSFDPQAH--TVALSDGR---------------TLPYGTLVLATGAA  112 (408)
T ss_dssp             TTSCSCEEEETCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEE
T ss_pred             HHHCCCEEEcCCEEEEEECCCC--EEEECCCC---------------EEECCEEEECCCCC
Confidence            3467999999999999976543  56666663               79999999999974

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=87.51  E-value=0.55  Score=41.83  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=35.7

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ...++++|++++.++.+.   ...+.+.|++.+|...   ......+++.++++|+||+|+|.+.
T Consensus       102 ~~~~~~~gv~~~~g~~~~---~~~~~v~v~~~~g~~~---~~~~~~g~~~~i~ad~lViAtGs~p  160 (482)
T 1ojt_A          102 AGMAKSRKVDVIQGDGQF---LDPHHLEVSLTAGDAY---EQAAPTGEKKIVAFKNCIIAAGSRV  160 (482)
T ss_dssp             HHHHHHTTCEEEEEEEEE---EETTEEEEEEEEEEET---TEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred             HHHHHhCCcEEEeeEEEE---ccCCEEEEEecCCccc---ccccccCcceEEEcCEEEECCCCCC
Confidence            345677899999888664   3456677765443000   0000001123799999999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=87.45  E-value=1.1  Score=39.54  Aligned_cols=48  Identities=15%  Similarity=0.183  Sum_probs=35.5

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.++++|++++.++.+.   ...+.+.|++++|.              .++++|+||+|+|...
T Consensus        98 ~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~--------------~~i~~d~lViATGs~p  145 (455)
T 1ebd_A           98 EGLLKGNKVEIVKGEAYF---VDANTVRVVNGDSA--------------QTYTFKNAIIATGSRP  145 (455)
T ss_dssp             HHHHHTTTCEEEESEEEE---EETTEEEEEETTEE--------------EEEECSEEEECCCEEE
T ss_pred             HHHHHhCCCEEEEEEEEE---ccCCeEEEEeCCCc--------------EEEEeCEEEEecCCCC
Confidence            345667899999988664   34567888876651              1699999999999743

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=87.36  E-value=1.2  Score=39.13  Aligned_cols=44  Identities=18%  Similarity=0.145  Sum_probs=34.7

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +++.|++++.+++|+.+..  +.+.|+++++              +.++.+|.||+|+|.
T Consensus        69 ~~~~gi~v~~~~~v~~i~~--~~~~v~~~~g--------------~~~~~~d~lviAtG~  112 (449)
T 3kd9_A           69 IKKRGIDLHLNAEVIEVDT--GYVRVRENGG--------------EKSYEWDYLVFANGA  112 (449)
T ss_dssp             HHHTTCEEETTCEEEEECS--SEEEEECSSS--------------EEEEECSEEEECCCE
T ss_pred             HHhcCcEEEecCEEEEEec--CCCEEEECCc--------------eEEEEcCEEEECCCC
Confidence            3678999999999999854  3466777655              126999999999996

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=87.16  E-value=0.76  Score=39.50  Aligned_cols=45  Identities=20%  Similarity=0.183  Sum_probs=35.5

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +.++++|++++.+++|+.+...+.  .|+++++                ++++|+||+|+|..
T Consensus        68 ~~~~~~~v~~~~~~~v~~i~~~~~--~v~~~~~----------------~~~~d~lviAtG~~  112 (384)
T 2v3a_A           68 AMAEQLNARILTHTRVTGIDPGHQ--RIWIGEE----------------EVRYRDLVLAWGAE  112 (384)
T ss_dssp             HHHHHTTCEEECSCCCCEEEGGGT--EEEETTE----------------EEECSEEEECCCEE
T ss_pred             HHHHhCCcEEEeCCEEEEEECCCC--EEEECCc----------------EEECCEEEEeCCCC
Confidence            345788999999999999876544  4555544                79999999999974

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=87.09  E-value=0.94  Score=39.88  Aligned_cols=47  Identities=13%  Similarity=0.255  Sum_probs=37.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+..+++|++++++++|++++  ++  .|++++|+               ++++|.|++|+|.-.
T Consensus       194 ~~~~l~~~gV~i~~~~~v~~~~--~~--~v~~~~g~---------------~~~~D~vl~a~G~~P  240 (437)
T 4eqs_A          194 ILDELDKREIPYRLNEEINAIN--GN--EITFKSGK---------------VEHYDMIIEGVGTHP  240 (437)
T ss_dssp             HHHHHHHTTCCEEESCCEEEEE--TT--EEEETTSC---------------EEECSEEEECCCEEE
T ss_pred             HHHHhhccceEEEeccEEEEec--CC--eeeecCCe---------------EEeeeeEEEEeceec
Confidence            4567788999999999998874  33  35566663               799999999999654

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=86.50  E-value=1.1  Score=39.59  Aligned_cols=49  Identities=12%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.++++|++++.++.+.   ...+.+.|++++|.             +.++++|.||+|+|...
T Consensus       103 ~~~~~~~gv~~~~g~~~~---~~~~~~~v~~~~G~-------------~~~i~~d~lIiAtGs~p  151 (470)
T 1dxl_A          103 EGLFKKNKVTYVKGYGKF---VSPSEISVDTIEGE-------------NTVVKGKHIIIATGSDV  151 (470)
T ss_dssp             HHHHHHHTCEEEESCEEE---EETTEEEECCSSSC-------------CEEEECSEEEECCCEEE
T ss_pred             HHHHHhCCCEEEEeEEEE---ecCCEEEEEeCCCc-------------eEEEEcCEEEECCCCCC
Confidence            345667899999998764   34567888776551             12799999999999744

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=86.27  E-value=0.96  Score=39.28  Aligned_cols=45  Identities=9%  Similarity=0.064  Sum_probs=36.4

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +..++.|++++.+++|+.+...+.  .|+++++.               ++.+|.+|+|+|.
T Consensus        73 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~---------------~~~~d~lvlAtG~  117 (415)
T 3lxd_A           73 QFWEDKAVEMKLGAEVVSLDPAAH--TVKLGDGS---------------AIEYGKLIWATGG  117 (415)
T ss_dssp             HHHHHTTEEEEETCCEEEEETTTT--EEEETTSC---------------EEEEEEEEECCCE
T ss_pred             HHHHHCCcEEEeCCEEEEEECCCC--EEEECCCC---------------EEEeeEEEEccCC
Confidence            455678999999999999976654  56666663               7999999999995

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=85.86  E-value=0.91  Score=41.73  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=38.5

Q ss_pred             HCCcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCCh-HHHHHHh
Q 026314            9 NHGTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLSA-PALAKRF   75 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~wa-~~l~~~~   75 (240)
                      +.+.+|++++.|+.|..+  +++++ |+..+.           .|.++++.| +-||+|||+.. .+|+...
T Consensus       218 r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~-----------~g~~~~v~A~keVILsaGa~~sp~lL~~S  278 (577)
T 3q9t_A          218 KPNITIVPEVHSKRLIINEADRTCKGVTVVTA-----------AGNELNFFADREVILSQGVFETPKLLMLS  278 (577)
T ss_dssp             CTTEEEECSEEEEEEEEETTTTEEEEEEEEET-----------TSCEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             CCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeC-----------CCcEEEEEeeeEEEEcccccCChHHHHHc
Confidence            458999999999999988  56554 554321           023557889 56999998764 4555443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=85.78  E-value=1.1  Score=39.60  Aligned_cols=49  Identities=10%  Similarity=0.045  Sum_probs=36.0

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .+.+++.|++++.++.+.   ...+.+.|++++|.             +.++++|+||+|+|...
T Consensus        98 ~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~-------------~~~~~~d~lViAtG~~~  146 (464)
T 2a8x_A           98 HFLMKKNKITEIHGYGTF---ADANTLLVDLNDGG-------------TESVTFDNAIIATGSST  146 (464)
T ss_dssp             HHHHHHTTCEEECEEEEE---SSSSEEEEEETTSC-------------CEEEEEEEEEECCCEEE
T ss_pred             HHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCc-------------eEEEEcCEEEECCCCCC
Confidence            455677899999888653   34567788876651             12799999999999854

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=85.65  E-value=0.81  Score=40.99  Aligned_cols=55  Identities=25%  Similarity=0.263  Sum_probs=39.4

Q ss_pred             HCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC-hHHHHHHh
Q 026314            9 NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS-APALAKRF   75 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w-a~~l~~~~   75 (240)
                      +.+.++.+++.|+.+..++++.+ |.....            +....+.|+.||+|||+. +.+|+...
T Consensus       223 r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~------------~~~~~~~a~~VILsAGai~SP~LLl~S  279 (526)
T 3t37_A          223 RKNLTILTGSRVRRLKLEGNQVRSLEVVGR------------QGSAEVFADQIVLCAGALESPALLMRS  279 (526)
T ss_dssp             CTTEEEECSCEEEEEEEETTEEEEEEEEET------------TEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             CCCeEEEeCCEEEEEEecCCeEEEEEEEec------------CceEEEeecceEEcccccCCcchhhhc
Confidence            34789999999999999988764 443222            123478999999999875 45565543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=85.31  E-value=0.57  Score=42.98  Aligned_cols=58  Identities=26%  Similarity=0.166  Sum_probs=38.7

Q ss_pred             HHCCcEEEcCceEEEEEEe----C-CeE-EEEecCCcccccCCCCCCCCCceeEec-CEEEEcCCCC-hHHHHHHh
Q 026314            8 ENHGTTFSNNTSVIGGHLE----G-NCM-NVYISESKNLRNWDGVSPLQPELTLIP-KLVVNSAGLS-APALAKRF   75 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~----~-~~~-~V~t~~g~~~~~~~~~~~~~~~~~i~a-~~VV~aaG~w-a~~l~~~~   75 (240)
                      .+.+.+|++++.|++|..+    + ++. .|+..++.          ++++++++| +-||+|||+. +.+|+...
T Consensus       219 ~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~----------g~~~~~v~A~kEVILsAGai~SPqlL~lS  284 (566)
T 3fim_B          219 SRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQE----------GAPTTTVCAKKEVVLSAGSVGTPILLQLS  284 (566)
T ss_dssp             TCTTEEEESSCEEEEEECCEEETTEEECCEEEEESST----------TSCCEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred             cCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECC----------CceEEEEEeeeEEEEecCCcCChHHHHhc
Confidence            3458999999999999876    3 233 25543320          014567999 6799999865 55665544

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=84.92  E-value=0.66  Score=41.55  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=34.8

Q ss_pred             HCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            9 NHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      ++|++++.+++|++|.....  +|++++|.               ++.+|+||+|+|...
T Consensus       102 ~~gv~~~~g~~v~~id~~~~--~V~~~~g~---------------~i~yd~lviATGs~p  144 (493)
T 1m6i_A          102 NGGVAVLTGKKVVQLDVRDN--MVKLNDGS---------------QITYEKCLIATGGTP  144 (493)
T ss_dssp             TCEEEEEETCCEEEEEGGGT--EEEETTSC---------------EEEEEEEEECCCEEE
T ss_pred             cCCeEEEcCCEEEEEECCCC--EEEECCCC---------------EEECCEEEECCCCCC
Confidence            56899999999999987654  56666663               799999999999754

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=84.70  E-value=1.5  Score=38.73  Aligned_cols=47  Identities=17%  Similarity=0.110  Sum_probs=37.4

Q ss_pred             CcEEEcCceEEEEEEeC-CeEEEEec--CCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314           11 GTTFSNNTSVIGGHLEG-NCMNVYIS--ESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~-~~~~V~t~--~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      .++|+++++|++++..+ +++.|+++  +|             ++.+++||.||+|+|...+.
T Consensus       225 ~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G-------------~~~~i~~D~vi~a~G~~p~~  274 (466)
T 3l8k_A          225 KLNIKFNSPVTEVKKIKDDEYEVIYSTKDG-------------SKKSIFTNSVVLAAGRRPVI  274 (466)
T ss_dssp             CCCEECSCCEEEEEEEETTEEEEEECCTTS-------------CCEEEEESCEEECCCEEECC
T ss_pred             EEEEEECCEEEEEEEcCCCcEEEEEEecCC-------------ceEEEEcCEEEECcCCCccc
Confidence            49999999999998877 77877776  34             23469999999999976543

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=83.73  E-value=0.67  Score=43.83  Aligned_cols=43  Identities=7%  Similarity=-0.214  Sum_probs=32.3

Q ss_pred             CcEEEcCceEE--EEEEeCCe-------EEEEe-cCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314           11 GTTFSNNTSVI--GGHLEGNC-------MNVYI-SESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus        11 Ga~i~~~~~V~--~i~~~~~~-------~~V~t-~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      |.+|+++++|+  .|.+.+++       ++|++ .+|             ++.+++||+||+|+-.
T Consensus       360 g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G-------------~~~~~~aD~VIvTvP~  412 (721)
T 3ayj_A          360 VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHN-------------AVHSEAYDFVILAVPH  412 (721)
T ss_dssp             HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTC-------------CEEEEEESEEEECSCH
T ss_pred             CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCC-------------ceEEEEcCEEEECCCH
Confidence            67788899999  99887544       88844 444             2336899999998864

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=83.57  E-value=1.9  Score=37.22  Aligned_cols=44  Identities=9%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +...+.|++++. ++|+.+...+.  .|+++++.               ++.+|.||+|+|.
T Consensus        65 ~~~~~~~i~~~~-~~v~~id~~~~--~v~~~~g~---------------~~~~d~lvlAtG~  108 (404)
T 3fg2_P           65 KFFQDQAIELIS-DRMVSIDREGR--KLLLASGT---------------AIEYGHLVLATGA  108 (404)
T ss_dssp             HHHHHTTEEEEC-CCEEEEETTTT--EEEESSSC---------------EEECSEEEECCCE
T ss_pred             HHHHhCCCEEEE-EEEEEEECCCC--EEEECCCC---------------EEECCEEEEeeCC
Confidence            456778999999 99999987655  46666663               7999999999996

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=83.54  E-value=0.22  Score=42.80  Aligned_cols=42  Identities=12%  Similarity=0.117  Sum_probs=34.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.+++.|++|+++++|++++..          .                +++||.||.|.|.++.
T Consensus       103 ~L~~~~~~~gv~i~~~~~v~~i~~~----------~----------------~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A          103 ALRDKCRSQGIAIRFESPLLEHGEL----------P----------------LADYDLVVLANGVNHK  144 (381)
T ss_dssp             HHHHHHHHTTCEEETTCCCCSGGGC----------C----------------GGGCSEEEECCGGGGG
T ss_pred             HHHHHHHHCCCEEEeCCEeccchhc----------c----------------cccCCEEEECCCCCch
Confidence            4677888889999999999987531          1                3679999999999986

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=82.83  E-value=2.3  Score=36.46  Aligned_cols=45  Identities=16%  Similarity=0.187  Sum_probs=34.7

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +...++|++++. .+|++|..+..  .|++.+|.               ++.+|++|+|+|..
T Consensus        63 ~~~~~~gv~~i~-~~v~~id~~~~--~v~~~~g~---------------~i~yd~LviAtG~~  107 (401)
T 3vrd_B           63 DGLRAHGIQVVH-DSALGIDPDKK--LVKTAGGA---------------EFAYDRCVVAPGID  107 (401)
T ss_dssp             HHHHHTTCEEEC-SCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEE
T ss_pred             HHHHHCCCEEEE-eEEEEEEccCc--EEEecccc---------------eeecceeeeccCCc
Confidence            345678999985 57999987655  45667663               79999999999974

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=81.98  E-value=2.9  Score=34.24  Aligned_cols=49  Identities=18%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +.+.+++.+.++.. ..|..+....+...+.++++.               ++++|.||+|+|..
T Consensus        72 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~---------------~~~~~~liiATG~~  120 (314)
T 4a5l_A           72 MRTQSEKYGTTIIT-ETIDHVDFSTQPFKLFTEEGK---------------EVLTKSVIIATGAT  120 (314)
T ss_dssp             HHHHHHHTTCEEEC-CCEEEEECSSSSEEEEETTCC---------------EEEEEEEEECCCEE
T ss_pred             HHHHHhhcCcEEEE-eEEEEeecCCCceEEEECCCe---------------EEEEeEEEEccccc
Confidence            34567788999886 456666666666666666653               79999999999963

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=81.27  E-value=3.9  Score=38.48  Aligned_cols=64  Identities=6%  Similarity=-0.103  Sum_probs=39.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEe--cCCccc-----ccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYI--SESKNL-----RNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t--~~g~~~-----~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +.+..+++|++++++++|++|..  +++.++.  .++...     .+++ +-..+++.++.||.||+|+|.-.+
T Consensus       577 ~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~aD~Vv~a~G~~p~  647 (729)
T 1o94_A          577 MMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSP-RDANTSHRWIEFDSLVLVTGRHSE  647 (729)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCS-SCCCCCCEEEECSEEEEESCEEEC
T ss_pred             HHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccc-cccCCcceeeeCCEEEECCCCCCC
Confidence            34556788999999999999863  4455442  121000     0001 112244566999999999997544

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=80.10  E-value=2.4  Score=41.35  Aligned_cols=63  Identities=11%  Similarity=0.203  Sum_probs=40.3

Q ss_pred             HHHHHCCcEEEcCceEEEEEEe-CCeE-EEEecC--CcccccCCCCCCCCCceeEecCEEEEcCCCChH-HHHHHh
Q 026314            5 GEAENHGTTFSNNTSVIGGHLE-GNCM-NVYISE--SKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP-ALAKRF   75 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~-~~~~-~V~t~~--g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~-~l~~~~   75 (240)
                      +.++++|++|++++.|++|+.. ++++ .|+..+  ...        ..|++.++.||.||+|+|.-.+ .+++.+
T Consensus       324 ~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~--------~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~  391 (965)
T 2gag_A          324 AQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEAR--------ELGGTQRFEADVLAVAGGFNPVVHLHSQR  391 (965)
T ss_dssp             HHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTC--------CEEEEEEEECSEEEEECCEEECCHHHHHT
T ss_pred             HHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccC--------CCCceEEEEcCEEEECCCcCcChHHHHhC
Confidence            4567899999999999999874 4443 344332  000        0011237999999999996443 355544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	0.003
d1ryia2	88	d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillu	0.004

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 17/140 (12%), Positives = 27/140 (19%), Gaps = 28/140 (20%)

Query: 58  KLVVNSAGLSAPALAKRFIGLDNVFIPPAYYARGCYFSLANTKVAPFKHLIYPIPEDGGL 117
            +VV+ AG     +             P              +     H          L
Sbjct: 194 DIVVSCAGFWGAKIGAMIGMAVPPDGGPLLGESKELDGFYVAEAVWVTHSAGVAKAMAEL 253

Query: 118 GVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLRDG 177
                 + D                             +  R E       +Y  +    
Sbjct: 254 LTTGRSETDL-------------------------GECDITRFEDVQ-LTPEYVSETSQQ 287

Query: 178 SLQPSYAGIRPKLSGPRQSP 197
           +    Y  + P    PR SP
Sbjct: 288 NFVEIYDVLHPLQ--PRLSP 305

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 88

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 9/73 (12%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 116 GLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEIRKYYPDLR 175
               ++     G++  G  ++  D           +  + +    E    + +   P ++
Sbjct: 24  HDHCYIVPRKSGRLVVGATMKPGD-----------WSETPDLGGLESVMKKAKTMLPAIQ 72

Query: 176 DGSLQPSYAGIRP 188
           +  +   +AG+RP
Sbjct: 73  NMKVDRFWAGLRP 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.46
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.41
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.4
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.34
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	99.13
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	98.95
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.06
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.87
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.77
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.64
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.62
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	97.58
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	97.57
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.54
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.51
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	97.44
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.43
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.37
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	97.37
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.27
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	97.2
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	97.12
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.05
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	97.03
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.85
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	96.85
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	96.82
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.82
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.79
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.73
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.65
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.6
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.57
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.56
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.54
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.53
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.52
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.39
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.25
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.21
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	96.17
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	95.88
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.78
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.67
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	95.65
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.9
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	94.87
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.84
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	93.76
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	93.63
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.78
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	91.6
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.23
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.99
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	90.82
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	90.36
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.2
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.13
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	89.9
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.01
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	87.95
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.08
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.8
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	83.42
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.81
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.83

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.46  E-value=1.9e-14  Score=120.54  Aligned_cols=66  Identities=20%  Similarity=0.284  Sum_probs=59.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDN   80 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~   80 (240)
                      +|++.|+++|++|+++++|++|+.+++++. |.|++|                +|+||+||||||+|+.+|++++ +..+
T Consensus       153 ~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g----------------~i~a~~VV~aaG~~s~~l~~~~-g~~l  215 (305)
T d1pj5a2         153 LLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG----------------VIPADIVVSCAGFWGAKIGAMI-GMAV  215 (305)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE----------------EEECSEEEECCGGGHHHHHHTT-TCCC
T ss_pred             hHHhhhhcccccccCCceEEEEEEeCCEEEEEeccce----------------eEECCEEEEecchhHHHHHHHc-CCcc
Confidence            578899999999999999999999999875 999988                8999999999999999999998 5565


Q ss_pred             ccCC
Q 026314           81 VFIP   84 (240)
Q Consensus        81 ~~~p   84 (240)
                      ++.+
T Consensus       216 P~~~  219 (305)
T d1pj5a2         216 PPDG  219 (305)
T ss_dssp             CTTS
T ss_pred             cccc
Confidence            5544

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.41  E-value=3.6e-13  Score=111.30  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|.+.|+++|++|+++++|++|+..+++|.|+|++|                +|+||+||||||+|+..|++++
T Consensus       155 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g----------------~i~a~~VViAaG~~s~~l~~~l  212 (281)
T d2gf3a1         155 AYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG----------------SYTADKLIVSMGAWNSKLLSKL  212 (281)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE----------------EEEEEEEEECCGGGHHHHGGGG
T ss_pred             ccccccccccccccCCcEEEEEEEECCEEEEEECCc----------------EEEcCEEEECCCCcchhhHHhc
Confidence            578899999999999999999999999999999988                8999999999999999998877

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.40  E-value=4.2e-13  Score=110.37  Aligned_cols=58  Identities=16%  Similarity=0.176  Sum_probs=54.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +|++.|+++|++|+++++|+.|+++++.|.|+|++|                +|+||.||||||+|+..|++++
T Consensus       156 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g----------------~i~a~~vV~AaG~~s~~l~~~~  213 (276)
T d1ryia1         156 AYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG----------------DVWANHVVVASGVWSGMFFKQL  213 (276)
T ss_dssp             HHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE----------------EEEEEEEEECCGGGTHHHHHHT
T ss_pred             HHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe----------------EEEcCEEEECCCccHHHHHhhc
Confidence            578889999999999999999998888899999988                8999999999999999999988

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.34  E-value=4.8e-13  Score=92.27  Aligned_cols=86  Identities=15%  Similarity=0.269  Sum_probs=70.7

Q ss_pred             eeeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhHHHHHHH
Q 026314           87 YYARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPE  166 (240)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (240)
                      +++|||++.++.+. ..+.+.++.      .+.|+.|..+|.+++|++.++.           .++..++++..+.+++.
T Consensus         2 ~PvKGq~l~v~~~~-~~~~~~i~~------~~~yiip~~~g~~~iG~T~e~~-----------~~d~~~~~~~~~~l~~~   63 (88)
T d1ryia2           2 LPVKGECLSVWNDD-IPLTKTLYH------DHCYIVPRKSGRLVVGATMKPG-----------DWSETPDLGGLESVMKK   63 (88)
T ss_dssp             EEEEEEEEEEECCS-SCCCSEEEE------TTEEEEECTTSEEEEECCCEET-----------CCCCSCCHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCC-CccCCEEeC------CCEEEEECCCCCEEEccEEEEC-----------CCCCCCCHHHHHHHHHH
Confidence            45999999998653 234444432      3478999999999999998764           56778899999999999


Q ss_pred             HhhhCCCCCCCCccccccccCCee
Q 026314          167 IRKYYPDLRDGSLQPSYAGIRPKL  190 (240)
Q Consensus       167 ~~~~~P~l~~~~i~~~~aG~r~~~  190 (240)
                      +.+++|.|...++++.|+|+||.+
T Consensus        64 a~~~~P~l~~~~v~~~waGlRP~t   87 (88)
T d1ryia2          64 AKTMLPAIQNMKVDRFWAGLRPGT   87 (88)
T ss_dssp             HHHHCGGGGGSEEEEEEEEEEEEC
T ss_pred             HHHHCCCcCCCcEeEEEEeeCCCC
Confidence            999999999999999999999973

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.13  E-value=4.1e-11  Score=83.15  Aligned_cols=88  Identities=17%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             eeeceeEEEEcCCCCCCcccee-ecCCC-CCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhHHHHH
Q 026314           87 YYARGCYFSLANTKVAPFKHLI-YPIPE-DGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFY  164 (240)
Q Consensus        87 ~~~~g~~~~~~~~~~~~~~~~i-~~~p~-~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (240)
                      +++|||++.++.+.   +.+.+ ...+. ......|+.|.. +++++|++.+..           .++..++.+.++.++
T Consensus         2 ~PvrGQil~v~~P~---~~~~~~~~~~~~~~~~~~yivpr~-~~~viG~T~e~~-----------~~d~~~~~~~~~~i~   66 (93)
T d1kifa2           2 QPGRGQIIKVDAPW---LKNFIITHDLERGIYNSPYIIPGL-QAVTLGGTFQVG-----------NWNEINNIQDHNTIW   66 (93)
T ss_dssp             EEEEEEEEEEECTT---CCSEEEEECTTTCTTCSCEEEECS-SSEEEECCCEET-----------CCCCSCCHHHHHHHH
T ss_pred             ccccceEEEEcCCC---CccceeeccccccCCCceEEEECC-CCEEEEEEeecC-----------CCCCCCCHHHHHHHH
Confidence            34999999998642   22221 11111 123446888885 458899998654           456778899999999


Q ss_pred             HHHhhhCCCCCCCCccccccccCCe
Q 026314          165 PEIRKYYPDLRDGSLQPSYAGIRPK  189 (240)
Q Consensus       165 ~~~~~~~P~l~~~~i~~~~aG~r~~  189 (240)
                      +.+.++||.|++.++.+.|+|+||.
T Consensus        67 ~~a~~~~P~l~~~~i~~~~~GlRP~   91 (93)
T d1kifa2          67 EGCCRLEPTLKDAKIVGEYTGFRPV   91 (93)
T ss_dssp             HHHHHHSGGGGGCEEEEEEEEEEEE
T ss_pred             HHHHHHHhhhcCCCeeeEEEeecCC
Confidence            9999999999999999999999997

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.95  E-value=3.3e-10  Score=78.76  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=65.5

Q ss_pred             eeceeEEEEcCCCCCCccceeecCCCCCCCeeEEEeecCCcEEEcCCccccCCcccccccccccccccchhhHHHHHHHH
Q 026314           88 YARGCYFSLANTKVAPFKHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDGIDDTLSFLNRFDYSVNANRAERFYPEI  167 (240)
Q Consensus        88 ~~~g~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (240)
                      ++|||++.++.+..   ...+....  .....|+.|..+|.+++|++.+..           .++..++.+..+++++.+
T Consensus         3 PvRGQ~~~v~~p~~---~~~~~~~~--~~~~~Yiipr~~g~vviG~T~e~~-----------~~d~~~~~~~~~~il~~a   66 (95)
T d1c0pa2           3 PIRGQTVLVKSPCK---RCTMDSSD--PASPAYIIPRPGGEVICGGTYGVG-----------DWDLSVNPETVQRILKHC   66 (95)
T ss_dssp             EEEEEEEEEECCCC---CCEEECSC--TTCCEEEEEETTTEEEEECCCEET-----------CCCCSCCHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCC---cccEEEec--CCCeEEEEECCCCEEEEEEEEEEC-----------CCcCCCCHHHHHHHHHHH
Confidence            39999999986421   12222111  123368999888999999998754           567788999999999999


Q ss_pred             hhhCCCCC------CCCccccccccCCe
Q 026314          168 RKYYPDLR------DGSLQPSYAGIRPK  189 (240)
Q Consensus       168 ~~~~P~l~------~~~i~~~~aG~r~~  189 (240)
                      .+++|.|.      ..++++.|+|+||.
T Consensus        67 ~~~~P~L~~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          67 LRLDPTISSDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             HHHCGGGSSSSSGGGCEEEEEEEEEEEE
T ss_pred             HHhCccccccccccCccEEEeEEEeCCC
Confidence            99999985      45688899999985

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.06  E-value=4.7e-06  Score=66.18  Aligned_cols=52  Identities=19%  Similarity=0.160  Sum_probs=45.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +|.+.++++|++|+++++|++|+.+++.+. |.+++++               +++||.||+|+|.++
T Consensus       115 ~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~---------------~i~a~~vI~AtGg~S  167 (251)
T d2i0za1         115 ALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGE---------------VLETNHVVIAVGGKS  167 (251)
T ss_dssp             HHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCC---------------EEECSCEEECCCCSS
T ss_pred             HHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCC---------------eEecCeEEEccCCcc
Confidence            467889999999999999999999988875 8887773               799999999999876

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=2e-05  Score=57.37  Aligned_cols=49  Identities=12%  Similarity=0.208  Sum_probs=43.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +.+..+++|+++++++.|++++..++++.|++++|+               ++.||.||.|+|.
T Consensus        89 ~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~---------------~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          89 TMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGR---------------KVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSC---------------EEEESEEEECCCE
T ss_pred             HHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCC---------------EEECCEEEEeecC
Confidence            456678899999999999999998888899998884               7999999999994

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.77  E-value=3.2e-05  Score=54.88  Aligned_cols=52  Identities=13%  Similarity=0.146  Sum_probs=43.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      .+.+..+++|++|+++++|++++..+++++|+..+++.            ..++.||.|++|+|
T Consensus        68 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~------------~~~~~~D~vlvAvG  119 (119)
T d3lada2          68 EAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEG------------EKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSE------------EEEEEESEEEECSC
T ss_pred             HHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCC------------CEEEECCEEEEeeC
Confidence            35667788999999999999999999888877766532            23799999999998

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.62  E-value=5.9e-05  Score=53.12  Aligned_cols=48  Identities=8%  Similarity=0.073  Sum_probs=40.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++|++++.|++|+..+++ ..|++++|+               ++.||.||.|+|
T Consensus        68 ~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~---------------~i~~D~Vi~a~G  116 (117)
T d1feca2          68 LTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGA---------------EADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSC
T ss_pred             HHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCC---------------EEEcCEEEEecC
Confidence            556778899999999999999887654 458888884               799999999998

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=7e-05  Score=52.77  Aligned_cols=49  Identities=6%  Similarity=0.084  Sum_probs=42.0

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      .+.+..+++|+++++++.|+.+...++ .++|++++|+               ++++|.||+|+|
T Consensus        67 ~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~---------------~~~~D~vi~a~G  116 (116)
T d1gesa2          67 TLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGR---------------SETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEECSC
T ss_pred             HHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCC---------------EEEcCEEEEecC
Confidence            356778889999999999999988765 5778888884               799999999998

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=97.57  E-value=6e-05  Score=60.03  Aligned_cols=51  Identities=12%  Similarity=0.074  Sum_probs=41.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCe----EEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNC----MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~----~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      .|.+.++++|++|+++++|+++++..+.    +.++++++                +++||.||+|+|..+
T Consensus       114 ~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~----------------~~~a~~VIiAtGG~S  168 (253)
T d2gqfa1         114 MLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST----------------QWQCKNLIVATGGLS  168 (253)
T ss_dssp             HHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE----------------EEEESEEEECCCCSS
T ss_pred             HHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCE----------------EEEeCEEEEcCCccc
Confidence            4677889999999999999999887653    34555544                899999999999764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.54  E-value=2.5e-05  Score=62.20  Aligned_cols=56  Identities=25%  Similarity=0.111  Sum_probs=40.1

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      .+++.|++|+++++|++|+.++++++|++.++.            +..+++||.||+|++++  .+.+++
T Consensus       228 l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~------------~~~~~~ad~VV~a~p~~--~~~~Ll  283 (347)
T d2ivda1         228 LAASLGDAAHVGARVEGLAREDGGWRLIIEEHG------------RRAELSVAQVVLAAPAH--ATAKLL  283 (347)
T ss_dssp             HHHHHGGGEESSEEEEEEECC--CCEEEEEETT------------EEEEEECSEEEECSCHH--HHHHHH
T ss_pred             HHHHhhcccccCCEEEEEEEeCCeEEEEEEcCC------------eEEEEECCEEEECCCHH--HHHHhc
Confidence            456679999999999999998888876554431            23479999999999965  334444

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.51  E-value=8.7e-05  Score=52.83  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=40.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEE--EecCCcccccCCCCCCCCCceeEecCEEEEcC
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNV--YISESKNLRNWDGVSPLQPELTLIPKLVVNSA   64 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V--~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aa   64 (240)
                      .+.+..+++|++|++++.|++|+..+++++|  +..++            +++.+++||.|++||
T Consensus        71 ~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~------------g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          71 QFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAG------------GEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSS------------CCCEEEEESEEECCC
T ss_pred             hhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCC------------CeEEEEEcCEEEEcC
Confidence            3567788999999999999999988877654  44333            345579999999997

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.44  E-value=0.00015  Score=59.02  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=43.5

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .+.+.+++.|++|+++++|+++...+ +++. |...+..           +.+..|+||.||+|+|.++.
T Consensus       150 ~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~-----------~~~~~i~Ak~VVlAtGG~~~  208 (308)
T d1y0pa2         150 VLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMY-----------KGYYWVKADAVILATGGFAK  208 (308)
T ss_dssp             HHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETT-----------TEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHhccceEEEeeccchhhhhcccccccccccccc-----------cceeEeecCeEEEccCcccc
Confidence            46778899999999999999988766 4554 5543321           12457999999999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.43  E-value=0.00016  Score=51.66  Aligned_cols=52  Identities=17%  Similarity=0.108  Sum_probs=41.5

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++++++++|++++..++++.|++..++           +...+++||.|++|+|
T Consensus        73 l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~-----------g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          73 WQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGAN-----------APKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSS-----------CCSSCEEESCEEECCC
T ss_pred             HHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCC-----------CCeEEEEcCEEEEecC
Confidence            566778899999999999999999888776654431           2233799999999998

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.37  E-value=7.9e-05  Score=58.45  Aligned_cols=28  Identities=36%  Similarity=0.385  Sum_probs=25.1

Q ss_pred             CEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          212 GLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       212 ~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      .+++++|++|.|+++++++|+.++++|.
T Consensus       233 ~vv~~~g~~g~G~~~s~g~a~~~~~lv~  260 (268)
T d1c0pa1         233 TLVHAYGFSSAGYQQSWGAAEDVAQLVD  260 (268)
T ss_dssp             EEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             eEEecCCCCCccHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999874

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.37  E-value=0.00017  Score=59.59  Aligned_cols=57  Identities=16%  Similarity=-0.067  Sum_probs=45.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |...|+..+..|+++++|++|+..+++|.|++.+++.         .++..+..+|.||+|+|.++
T Consensus       119 l~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~---------~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         119 QRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKA---------GSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESST---------TCCEEEEEESEEEECCCSSS
T ss_pred             HHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCC---------CCeEEEEEeeEEEEcccccc
Confidence            4456677889999999999999999999988766521         12344567999999999876

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.27  E-value=0.00037  Score=50.14  Aligned_cols=48  Identities=19%  Similarity=0.270  Sum_probs=39.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC--eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN--CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~--~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++++++++|+.|+...+  .+. |.+++|+               +++||.||+|+|
T Consensus        83 ~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~---------------~i~~D~vi~a~G  133 (133)
T d1q1ra2          83 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGT---------------RLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSC---------------EEECSEEEECCC
T ss_pred             hhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCC---------------EEECCEEEEeeC
Confidence            34556888999999999999987653  444 8888884               799999999998

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=97.20  E-value=0.00022  Score=58.57  Aligned_cols=57  Identities=19%  Similarity=0.114  Sum_probs=42.4

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .|.+.|.++|++|+++++|+++...+ +++. |...+..           +....|.||.||+|+|.++.
T Consensus       157 ~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~-----------~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         157 VLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEY-----------TGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             HHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETT-----------TEEEEEECSEEEECCCCCTT
T ss_pred             HHHHHHHhcCceEEEeeecccccccccccccceEEEeec-----------ccEEEEeCCeEEEcCCCccc
Confidence            46788999999999999999998754 4443 4332211           12346999999999999874

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=97.12  E-value=0.00037  Score=57.19  Aligned_cols=57  Identities=14%  Similarity=0.079  Sum_probs=42.8

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.++++|++++++++|+.+...+ +++. |...+..           +..+.|.||.||+|+|.|+.
T Consensus       153 ~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~-----------~~~~~i~Ak~VVlAtGG~~~  211 (317)
T d1qo8a2         153 TLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKH-----------TGYYMIGAKSVVLATGGYGM  211 (317)
T ss_dssp             HHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETT-----------TEEEEEEEEEEEECCCCCTT
T ss_pred             HHHHHhhhccceeeeccchhheeecccccceeeEeeccc-----------ceEEEEeccceEEecccccc
Confidence            57788999999999999999987754 4553 4433221           23456999999999999874

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.05  E-value=0.00085  Score=46.91  Aligned_cols=46  Identities=13%  Similarity=0.146  Sum_probs=39.1

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS   63 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a   63 (240)
                      +.+..+++|++|++++.|++++..++ .+.|++++|+               +++||.||.|
T Consensus        70 l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~---------------~i~~D~Vi~A  116 (117)
T d1aoga2          70 LTKQLTANGIQILTKENPAKVELNADGSKSVTFESGK---------------KMDFDLVMMA  116 (117)
T ss_dssp             HHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSC---------------EEEESEEEEC
T ss_pred             HHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCc---------------EEEeCEEEEe
Confidence            56677889999999999999987654 5779998884               7999999987

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.03  E-value=0.00091  Score=46.68  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=38.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS   63 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a   63 (240)
                      +.+..+++|++|+++++|++++..++++.|+...+            |++.+++||.|++.
T Consensus        69 l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~------------g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          69 IKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEAN------------GETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEET------------TEEEEEEESEEEEC
T ss_pred             HHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeC------------CCEEEEEeEEEEEC
Confidence            56677889999999999999999988887665433            22447999999973

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.0018  Score=45.52  Aligned_cols=51  Identities=16%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe--EEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC--MNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS   63 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~--~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a   63 (240)
                      +.+..+++|++|+++++|++++..+++  ++++..++.          .++..+++||.|++|
T Consensus        70 l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~----------~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          70 TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTK----------TNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETT----------TTEEEEEEESEEEEC
T ss_pred             HHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCC----------CCCeEEEEeCEEEEC
Confidence            566778899999999999999988764  445554442          233457999999986

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00058  Score=55.42  Aligned_cols=47  Identities=13%  Similarity=-0.024  Sum_probs=41.2

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +.+++.|++|+++++|+.|..+++++.|++.+|.               +++||+||.|..+
T Consensus       215 ~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~---------------~~~ad~vI~a~p~  261 (383)
T d2v5za1         215 RIMDLLGDRVKLERPVIYIDQTRENVLVETLNHE---------------MYEAKYVISAIPP  261 (383)
T ss_dssp             HHHHHHGGGEEESCCEEEEECSSSSEEEEETTSC---------------EEEESEEEECSCG
T ss_pred             HHHHHcCCeEEecCcceEEEecCCeEEEEECCCC---------------EEECCEEEECCCH
Confidence            3456779999999999999999999999998884               7999999999875

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=96.82  E-value=0.0018  Score=52.89  Aligned_cols=58  Identities=10%  Similarity=0.042  Sum_probs=45.1

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+.+++.|++|+.+++|+++..+++++. +...+..          .|+...|.|+.||+|+|.+..
T Consensus       163 ~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~----------~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         163 AVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLV----------TGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETT----------TCCEEEEECSEEEECCCCCGG
T ss_pred             HHHHHHHhccccccceeeeeecccccccccceeEEecc----------CCcEEEEecCeEEEecccccc
Confidence            577889999999999999999999988764 3332211          234667999999999999863

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.82  E-value=0.00081  Score=54.05  Aligned_cols=49  Identities=10%  Similarity=0.019  Sum_probs=38.4

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +++.|++|+++++|++|+..+++++|+....           .++..+++||.||+|++.
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~-----------~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKVTVVYETL-----------SKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCEEEEEECS-----------SSCCCEEEESEEEECSCH
T ss_pred             HHhcCCccccCceEEEEEEeCCeEEEEEEec-----------CCCeEEEEeeEEEecCCH
Confidence            5678999999999999999998887654322           122347999999999975

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0023  Score=45.12  Aligned_cols=57  Identities=14%  Similarity=-0.002  Sum_probs=39.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++|+++++|++|+..++++.++......++      ....+..++||.|+.|+|
T Consensus        69 ~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~------~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          69 CTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR------LPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTS------CCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCc------CcCccccccCCEEEEEeC
Confidence            556778899999999999999999887765432221000      001123578999999998

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.73  E-value=0.00062  Score=56.55  Aligned_cols=66  Identities=15%  Similarity=0.060  Sum_probs=44.8

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCe-E--EEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC-ChHHHHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNC-M--NVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~-~--~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-wa~~l~~~~   75 (240)
                      .+...|+++| ++|+++|+|+.|+..+++ +  .|...+..        -..+++.+++||.||+|||+ .+.+|+-..
T Consensus       223 ~yl~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~--------~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         223 TYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTD--------GKLLATKEISCRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             THHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTT--------CCEEEEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred             hhhHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCC--------CcceeEEEEecCEEEEecchhcCHHHHHhC
Confidence            4567888888 899999999999987653 3  33332210        01123457999999999996 566665443

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.65  E-value=0.0017  Score=45.71  Aligned_cols=44  Identities=20%  Similarity=0.305  Sum_probs=35.3

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++|+++++|+++.  ++  .|++++|.               +++||.||.|+|
T Consensus        78 ~~~~l~~~GV~i~~~~~v~~~~--~~--~v~l~dg~---------------~i~~D~vi~a~G  121 (121)
T d1d7ya2          78 VARYHAAQGVDLRFERSVTGSV--DG--VVLLDDGT---------------RIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHTTTCEEEESCCEEEEE--TT--EEEETTSC---------------EEECSEEEECSC
T ss_pred             HHHHHHHCCcEEEeCCEEEEEe--CC--EEEECCCC---------------EEECCEEEEeeC
Confidence            4456688899999999999875  33  35667773               799999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.60  E-value=0.0025  Score=44.18  Aligned_cols=48  Identities=21%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++++++++|++++  ++...+...++             .+.+++||.||+|+|
T Consensus        68 l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~-------------~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          68 VAESLKKLGIALHLGHSVEGYE--NGCLLANDGKG-------------GQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSS-------------CCCEECCSCEEECCC
T ss_pred             HHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCC-------------CeEEEEcCEEEEecC
Confidence            4566788899999999999985  44333333333             123799999999998

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.57  E-value=0.0017  Score=45.34  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=36.6

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCe-EE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNC-MN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|.+++++++|+.|+..+++ +. +......            ...+++||.||+|+|
T Consensus        69 ~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~------------~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          69 VLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPN------------GEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETT------------EEEEEECSCEEECCC
T ss_pred             hhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCC------------CCEEEEcCEEEEEEC
Confidence            456678899999999999999987653 32 2221110            123799999999998

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.56  E-value=0.00065  Score=56.57  Aligned_cols=65  Identities=14%  Similarity=0.080  Sum_probs=43.1

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCe-EEEEe--cCCcccccCCCCCCCCCceeEecCEEEEcCCC-ChHHHHHH
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNC-MNVYI--SESKNLRNWDGVSPLQPELTLIPKLVVNSAGL-SAPALAKR   74 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~-~~V~t--~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~-wa~~l~~~   74 (240)
                      ++...|.+.| ++|+++++|+.|+.++++ +.|..  .+..        ....++.+++||.||+|||. .+.+|+-.
T Consensus       227 ~~L~~a~~~g~~~i~t~~~V~~I~~~~~~~~~V~v~~~~~~--------~~~~~~~~~~A~~VILaAGai~Tp~LLL~  296 (370)
T d3coxa1         227 TYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQ--------GNVVATKVVTADRVFFAAGSVGTSKLLVS  296 (370)
T ss_dssp             THHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTT--------SCEEEEEEEEEEEEEECSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcEEEecCcEEEEEEcCCCeEEEEEEEeCCc--------cceeeEEEEECCEEEEeeCHHHhHHHHHh
Confidence            3556777777 799999999999988753 33322  1110        00122346999999999995 66766643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.54  E-value=0.0036  Score=43.94  Aligned_cols=53  Identities=13%  Similarity=0.088  Sum_probs=39.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeC----CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEG----NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~----~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++|++++.|+.++..+    +.++++...+.          .+++..+++|.|++|+|
T Consensus        66 l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~----------~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          66 IGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTN----------SEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTT----------SCEEEEEEESEEECCCC
T ss_pred             HHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECC----------CCcEEEEECCEEEEEeC
Confidence            5677888999999999999998754    24556554442          23345678999999988

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.53  E-value=0.0018  Score=52.76  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=45.2

Q ss_pred             hhHHHHHCCc--EEEcCceEEEEEEeC--CeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHH
Q 026314            3 VQGEAENHGT--TFSNNTSVIGGHLEG--NCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAK   73 (240)
Q Consensus         3 l~~~A~~~Ga--~i~~~~~V~~i~~~~--~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~   73 (240)
                      |.+.|++.+.  .|+++++|++++..+  ++|+|++.++.               +++||.||+|+|..+.....
T Consensus        91 l~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~---------------~~~~~~~i~atG~ls~~~~p  150 (298)
T d1w4xa1          91 INFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGD---------------RIRARYLIMASGQLSDALTG  150 (298)
T ss_dssp             HHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCC---------------EEEEEEEEECCCSCCCCTTH
T ss_pred             HHHHHHHcCCcccccCCcEEEEEEEecCCCceeecccccc---------------ccccceEEEeecccccccCC
Confidence            4566788887  699999999998644  57999998773               79999999999987755444

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.52  E-value=0.00018  Score=55.92  Aligned_cols=60  Identities=15%  Similarity=0.186  Sum_probs=40.7

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHhcCCCCc
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRFIGLDNV   81 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~~~~~~~   81 (240)
                      +|.+.++++|++|+.. +|++++.          -+                ...+|.||||+|.|+..+..     +..
T Consensus       147 ~L~~~~~~~G~~~~~~-~v~~l~~----------~~----------------~~~~d~vVnctG~~a~~l~~-----d~~  194 (246)
T d1kifa1         147 WLTERLTERGVKFFLR-KVESFEE----------VA----------------RGGADVIINCTGVWAGVLQP-----DPL  194 (246)
T ss_dssp             HHHHHHHHTTCEEEEC-CCCCHHH----------HH----------------HTTCSEEEECCGGGHHHHSC-----CTT
T ss_pred             HHHHHHHHCCCEEEEe-EeCCHHH----------hc----------------cCCCCEEEECCcccccccCC-----CCC
Confidence            5788899999998753 4554321          11                35689999999999977554     333


Q ss_pred             cCCCceeeceeEEEEc
Q 026314           82 FIPPAYYARGCYFSLA   97 (240)
Q Consensus        82 ~~p~~~~~~g~~~~~~   97 (240)
                      .+|    .+++.+...
T Consensus       195 ~~~----~r~~~lr~~  206 (246)
T d1kifa1         195 QVR----LEREQLRFG  206 (246)
T ss_dssp             SCE----EEEEEEESS
T ss_pred             eec----cceEEEeeC
Confidence            455    788777543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.39  E-value=0.0052  Score=42.78  Aligned_cols=46  Identities=7%  Similarity=0.141  Sum_probs=37.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-eEEEEecCCcccccCCCCCCCCCceeE-ecCEEEEc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-CMNVYISESKNLRNWDGVSPLQPELTL-IPKLVVNS   63 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-~~~V~t~~g~~~~~~~~~~~~~~~~~i-~a~~VV~a   63 (240)
                      +.+..+++|++++++++|++++..++ .+.|++++|+               ++ .+|.||.|
T Consensus        69 ~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~---------------~~~~~D~Vi~A  116 (117)
T d1onfa2          69 LENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGR---------------IYEHFDHVIYC  116 (117)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSC---------------EEEEESEEEEC
T ss_pred             HHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCC---------------EEEeCCEEEEe
Confidence            45667889999999999999987654 5779998884               45 46999987

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.25  E-value=0.0013  Score=46.29  Aligned_cols=99  Identities=10%  Similarity=0.080  Sum_probs=57.6

Q ss_pred             eceeEEEEcCCCCCCc------cceeecCCCCCCCeeEEEeecCCcEEEcCCccccCC--ccccc-----cccccc---c
Q 026314           89 ARGCYFSLANTKVAPF------KHLIYPIPEDGGLGVHVTLDLDGQIKFGPDVEWIDG--IDDTL-----SFLNRF---D  152 (240)
Q Consensus        89 ~~g~~~~~~~~~~~~~------~~~i~~~p~~~~~~~~~~~~~~g~~~~G~~~~~~~~--~~~~~-----~~~~~~---~  152 (240)
                      +.+||+++++-.. ..      ...-+|+-.+....+|+++ .+|++++|++......  ++++-     .++..+   .
T Consensus         4 veHqY~vTepip~-l~~~~~~~~~~~~P~vRD~d~~~Y~R~-e~~gll~G~yE~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (119)
T d1pj5a3           4 LAHQYVKTTPVPA-QQGRNDQPNGARLPILRHQDQDLYYRE-HGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMPSR   81 (119)
T ss_dssp             EEEEEEEESCCGG-GTTTSCTTTCCCSCEEEEGGGTEEEEE-ETTEEEEEECCSCCCBCCGGGSCCCCGGGCBTTBSTTE
T ss_pred             ccceEEeecCchH-hhhcccccCCCCCCEEEeCCCCEEEEE-eCCeEEEeecCCCCcccccccccccCccCCCcccchhh
Confidence            9999999976321 00      0011122111123355555 5789999987632100  11110     011111   2


Q ss_pred             cccchhhHHHHHHHHhhhCCCCCCCCccccccccCCe
Q 026314          153 YSVNANRAERFYPEIRKYYPDLRDGSLQPSYAGIRPK  189 (240)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~~aG~r~~  189 (240)
                      ...+.+.++..++.+.+++|.|+...|.+.++|.-++
T Consensus        82 ~~~d~d~~~~~~e~a~~r~P~l~~~gi~~~~NGp~sf  118 (119)
T d1pj5a3          82 LDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFSF  118 (119)
T ss_dssp             ECCCHHHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHhcCCcccccccceeecCccc
Confidence            3345678889999999999999999998888886543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.21  E-value=0.0035  Score=44.05  Aligned_cols=45  Identities=20%  Similarity=0.208  Sum_probs=33.8

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEc
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNS   63 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~a   63 (240)
                      +.+..+++|++++++++|++|+..+....|.++.+                +++||.||+|
T Consensus        78 ~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~----------------~i~~D~vi~a  122 (123)
T d1nhpa2          78 LTEEMEANNITIATGETVERYEGDGRVQKVVTDKN----------------AYDADLVVVA  122 (123)
T ss_dssp             HHHHHHTTTEEEEESCCEEEEECSSBCCEEEESSC----------------EEECSEEEEC
T ss_pred             HHHHhhcCCeEEEeCceEEEEEcCCCEEEEEeCCC----------------EEECCEEEEE
Confidence            34566788999999999999986433223555443                7999999987

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0039  Score=50.80  Aligned_cols=54  Identities=7%  Similarity=-0.023  Sum_probs=38.8

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      .++..|++|+++++|+++..+++++. +...+..          .|+...+.|+.||+|+|.++.
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~----------~g~~~~~~AkaVILATGG~g~  198 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMM----------EGTLVQIRANAVVMATGGAGR  198 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEEETTEEEEEEEEETT----------TTEEEEEECSCEEECCCCCGG
T ss_pred             HHccCcceeEeeeEeeeeEecCCcceeEEEEEcC----------CCcEEEEECCEEEEcCCCccc
Confidence            33445899999999999999988764 4321110          133456899999999999763

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=95.88  E-value=0.0065  Score=50.42  Aligned_cols=66  Identities=20%  Similarity=0.091  Sum_probs=45.4

Q ss_pred             hhhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-ChHHHHHHh
Q 026314            2 WVQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKRF   75 (240)
Q Consensus         2 al~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-wa~~l~~~~   75 (240)
                      ++...|.+++ .+|++++.|+.|..+++++. |+..+..        ...+.+.++.|+. ||+|||+ .+.+|+...
T Consensus       195 ~yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~--------~~~~~~~~v~a~~eVILsAGai~SP~LLl~S  264 (360)
T d1kdga1         195 TYLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPT--------LGPNGFIPVTPKGRVILSAGAFGTSRILFQS  264 (360)
T ss_dssp             THHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTT--------SSGGGEEEEEEEEEEEECSHHHHHHHHHHHT
T ss_pred             hhhhhhhcccccccccCcEEEEEEEeCCEEEEEEEEecc--------cCcceEEEEEECCEEEEechhHhChHHHHhc
Confidence            4556666665 79999999999999888765 7764321        0112344566655 9999994 667777655

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.78  E-value=0.0044  Score=43.38  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=34.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +.+..+++|++++++++|+++..  ++  +.++.+                .++||.||.|+|.
T Consensus        78 ~~~~l~~~GV~~~~~~~v~~~~~--~~--v~~~~~----------------~i~~D~vi~a~Gv  121 (122)
T d1xhca2          78 IKDMLEETGVKFFLNSELLEANE--EG--VLTNSG----------------FIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHTTEEEECSCCEEEECS--SE--EEETTE----------------EEECSCEEEECCE
T ss_pred             HHHHHHHCCcEEEeCCEEEEEeC--CE--EEeCCC----------------EEECCEEEEEEEe
Confidence            45667889999999999998853  22  445444                7999999999994

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.67  E-value=0.011  Score=44.46  Aligned_cols=52  Identities=17%  Similarity=0.066  Sum_probs=41.1

Q ss_pred             HHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            5 GEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         5 ~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +..+++|.+++++++|++|+.+++.++++....            |+++++.+|.+|.|+|.+.
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~------------g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVS------------GEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTTEEEEEETTT------------CCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEeeccccceeeeccc------------ccccccccceeeEeeccee
Confidence            356788999999999999998877776653222            3466799999999999765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0039  Score=47.94  Aligned_cols=44  Identities=16%  Similarity=0.212  Sum_probs=36.6

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ++++|++++++++|++|...+.  +|++++|.               ++.+|.||+|+|.-
T Consensus        93 ~~~~gI~~~~g~~V~~id~~~~--~V~l~dG~---------------~i~~d~lViAtG~~  136 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVRDN--MVKLNDGS---------------QITYEKCLIATGGT  136 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGGGT--EEEETTSC---------------EEEEEEEEECCCEE
T ss_pred             HHHCCeEEEeCCEEEEeeccCc--eeeeccce---------------eeccceEEEeeeee
Confidence            4578999999999999977665  46777884               79999999999953

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.90  E-value=0.031  Score=43.15  Aligned_cols=54  Identities=7%  Similarity=0.135  Sum_probs=45.4

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      +...+++++++++|+++...+++++|++++|.               ++++|.+|.|.|.++..-....
T Consensus       106 ~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~---------------~~~~d~~v~adG~~s~~r~~~~  159 (265)
T d2voua1         106 ELFGPERYHTSKCLVGLSQDSETVQMRFSDGT---------------KAEANWVIGADGGASVVRKRLL  159 (265)
T ss_dssp             HHHCSTTEETTCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECCCTTCHHHHHHH
T ss_pred             HhcccceeecCcEEEEEEeeCCceEEEECCCC---------------EEEEEEEecccccccccccccc
Confidence            34557899999999999998899999999884               7999999999999886654444

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=94.87  E-value=0.022  Score=47.46  Aligned_cols=55  Identities=16%  Similarity=0.063  Sum_probs=40.3

Q ss_pred             HHCCcEEEcCceEEEEEEeCC----eEE-EE--ecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-ChHHHHHHh
Q 026314            8 ENHGTTFSNNTSVIGGHLEGN----CMN-VY--ISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKRF   75 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~----~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-wa~~l~~~~   75 (240)
                      ++.+.+|++++.|+.|..+++    +.. |+  +.+|             +++++.|++ ||+|||+ .+.+|+...
T Consensus       236 ~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g-------------~~~~v~A~keVILsAGAi~SP~LLl~S  299 (385)
T d1cf3a1         236 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKG-------------NTHNVYAKHEVLLAAGSAVSPTILEYS  299 (385)
T ss_dssp             TCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETT-------------EEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             cCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCC-------------CEEEEEeCCEEEEcCchhhCHHHHHhc
Confidence            445899999999999977654    332 43  4444             355799988 9999995 567787766

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.84  E-value=0.082  Score=40.74  Aligned_cols=54  Identities=7%  Similarity=0.011  Sum_probs=43.7

Q ss_pred             HHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHH
Q 026314            7 AENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPAL   71 (240)
Q Consensus         7 A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l   71 (240)
                      +...+..+.++++|+.+...++++.|++.++.           ++..+++||.||-|-|.++.--
T Consensus       116 ~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~-----------~~~~~~~ad~vi~ADG~~S~vr  169 (288)
T d3c96a1         116 ERLGQQAVRTGLGVERIEERDGRVLIGARDGH-----------GKPQALGADVLVGADGIHSAVR  169 (288)
T ss_dssp             HHHCTTSEEESEEEEEEEEETTEEEEEEEETT-----------SCEEEEEESEEEECCCTTCHHH
T ss_pred             HhccCeeeecCcEEEEeeecCCcEEEEEEcCC-----------CCeEEEeeceeeccCCccceee
Confidence            34568899999999999999999988877662           3345799999999999988543

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=93.76  E-value=0.046  Score=42.45  Aligned_cols=43  Identities=23%  Similarity=0.101  Sum_probs=36.2

Q ss_pred             CcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314           11 GTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus        11 Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +..|+ ..+|+++..+++++. |.|++|.               ++.|+.||+|+|-+.+
T Consensus        82 nL~i~-q~~V~dli~e~~~v~gV~t~~G~---------------~~~AkaVILtTGTFL~  125 (230)
T d2cula1          82 PLHLF-QATATGLLLEGNRVVGVRTWEGP---------------PARGEKVVLAVGSFLG  125 (230)
T ss_dssp             TEEEE-ECCEEEEEEETTEEEEEEETTSC---------------CEECSEEEECCTTCSS
T ss_pred             CHHHH-hccceeeEecccceeeEEecccc---------------EEEEeEEEEccCccee
Confidence            77888 478999999998876 9998884               7999999999997653

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=93.63  E-value=0.029  Score=46.85  Aligned_cols=55  Identities=13%  Similarity=0.095  Sum_probs=38.2

Q ss_pred             HHCCcEEEcCceEEEEEEe--CC--eEE-EE--ecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-ChHHHHHHh
Q 026314            8 ENHGTTFSNNTSVIGGHLE--GN--CMN-VY--ISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKRF   75 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~--~~--~~~-V~--t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-wa~~l~~~~   75 (240)
                      .+.+.+|++++.|+.|..+  ++  +.. |+  +.++             .++++.|++ ||+|||+ .+.+|+...
T Consensus       242 ~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g-------------~~~~v~A~keVILaAGai~SP~LLl~S  305 (391)
T d1gpea1         242 QRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKA-------------VNFDVFAKHEVLLAAGSAISPLILEYS  305 (391)
T ss_dssp             TCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETT-------------EEEEEEEEEEEEECSCTTTHHHHHHHT
T ss_pred             cchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCC-------------eEEEEEeCCEEEEecchhcchHHHHhc
Confidence            4568999999999998543  22  222 43  3333             345789988 9999997 567777665

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.78  E-value=0.15  Score=39.88  Aligned_cols=54  Identities=17%  Similarity=0.163  Sum_probs=36.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEE-eCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHL-EGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~-~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      |.+.+++.|..+..++.++.+.. .++++.|+...+            |++.+++||.||-|-|.++
T Consensus       109 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------------g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1         109 LMEAREACGATTVYQAAEVRLHDLQGERPYVTFERD------------GERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             HHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEET------------TEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecC------------CcEEEEEeCEEEECCCCCC
Confidence            56677888877777776665544 445666654333            2244799999999999876

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.18  Score=39.95  Aligned_cols=56  Identities=13%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC-------eEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN-------CMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~-------~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +.+.+++.|++++.+++++.+..+++       ++. |...+..          .++...+.++.||+|+|.+.
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~----------~g~~~~~~ak~VilAtGG~~  207 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRN----------KETVETCHAKAVVLATGGAS  207 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETT----------TTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCC----------CCcEEEEeecceEEeeeccc
Confidence            34555667999999999999987754       343 4332110          12345689999999999876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.23  E-value=0.21  Score=35.60  Aligned_cols=52  Identities=13%  Similarity=0.005  Sum_probs=39.2

Q ss_pred             HHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHHHHHHh
Q 026314            6 EAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPALAKRF   75 (240)
Q Consensus         6 ~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~l~~~~   75 (240)
                      ..++.|.+++++++|+.+.....  .+..+++                ++.+|.+|+|+|.-...+.+..
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~~~~--~~~~~~~----------------~i~~D~li~a~G~~~~~~~~~~  112 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDRGRK--VVITEKG----------------EVPYDTLVLATGAPNVDLARRS  112 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEETTTT--EEEESSC----------------EEECSEEEECCCEECCHHHHHT
T ss_pred             HHHhccceeeeeccccccccccc--ccccccc----------------ccccceeEEEEEecCCchhhhc
Confidence            45677999999999998864322  3444444                7999999999998877777665

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.35  Score=33.38  Aligned_cols=54  Identities=9%  Similarity=-0.015  Sum_probs=39.3

Q ss_pred             hhHHHHHCC-cEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            3 VQGEAENHG-TTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         3 l~~~A~~~G-a~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +++.+++++ .+++++++|+.|.-++++++ |+..+..          .+++.++.+|.|+++-|.
T Consensus        71 ~~~~~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~----------tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          71 LQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRV----------SGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             HHHHHHTCTTEEEESSEEEEEEEESSSSEEEEEEEETT----------TCCEEEEECSEEEECSCE
T ss_pred             cccccccccceeEEcCcceEEEEccccceeeEEEEECC----------CCCEEEEECCEEEEEeCC
Confidence            455666664 89999999999987666554 5554331          245678999999999883

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=90.82  E-value=0.096  Score=42.30  Aligned_cols=53  Identities=8%  Similarity=-0.004  Sum_probs=38.0

Q ss_pred             HHCCcEEEcCceEEEEEEeC--CeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCCCChHH
Q 026314            8 ENHGTTFSNNTSVIGGHLEG--NCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAPA   70 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~--~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~~   70 (240)
                      .+.|++|++++.|+.|...+  ++++ |+..+..          .++++.++|+.||+|||++-..
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~----------~g~~~~i~a~~vilaaGa~~tp  284 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLI----------SGDRFEIKADVYVLTAGAVHNT  284 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETT----------TCCEEEEEEEEEEECSCHHHHH
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECC----------CCEEEEEeceEEEeccCccCCH
Confidence            34579999999999998864  3443 5543221          2456789999999999987654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.49  Score=37.82  Aligned_cols=57  Identities=7%  Similarity=-0.043  Sum_probs=41.2

Q ss_pred             hhhHHHHHCCcEEEcCceEEEEEEeC-CeE-EEE-ecCCcccccCCCCCCCCCceeEecCEEEEcCCCChH
Q 026314            2 WVQGEAENHGTTFSNNTSVIGGHLEG-NCM-NVY-ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSAP   69 (240)
Q Consensus         2 al~~~A~~~Ga~i~~~~~V~~i~~~~-~~~-~V~-t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa~   69 (240)
                      +|.+++++.+++++.++.++.+.... +++ .+. ....           .++...+.|+.||+|+|.+..
T Consensus       148 ~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~-----------~g~~~~~~a~~vIlAtGG~~~  207 (330)
T d1neka2         148 TLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIE-----------TGEVVYFKARATVLATGGAGR  207 (330)
T ss_dssp             HHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETT-----------TCCEEEEEESCEEECCCCCGG
T ss_pred             HHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEcc-----------CCcEEEEeccEEEEcCCCccc
Confidence            46788889999999999999987744 333 221 1111           234567999999999998864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.20  E-value=0.19  Score=36.52  Aligned_cols=42  Identities=14%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             HCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            9 NHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      ..+++++++++|+.+.....  .+++++|+               ++++|.||.|+|.-
T Consensus        67 ~~~i~~~~~~~v~~i~~~~~--~~~~~~g~---------------~~~~D~vi~a~G~~  108 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQAH--TVALSDGR---------------TLPYGTLVLATGAA  108 (183)
T ss_dssp             STTCEEEETCCEEEEETTTT--EEEETTSC---------------EEECSEEEECCCEE
T ss_pred             cCCeEEEEeccccccccccc--eeEecCCc---------------EeeeeeEEEEEEEE
Confidence            45899999999999876554  45677773               79999999999963

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.13  E-value=0.23  Score=35.31  Aligned_cols=61  Identities=10%  Similarity=-0.094  Sum_probs=37.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCC---cccccCCC---CCCCCCceeEecCEEEEcCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISES---KNLRNWDG---VSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g---~~~~~~~~---~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..+++|++|+++++|++|+..  .+.+....+   .....-.+   .....+...+++|.+|++.|
T Consensus        88 ~~~~l~~~GV~i~~~~~v~~i~~~--~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D~vilvtg  154 (156)
T d1djqa2          88 MMRRLHELHVEELGDHFCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG  154 (156)
T ss_dssp             HHHHHHHTTCEEEETEEEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESC
T ss_pred             HHHHHhhccceEEeccEEEEecCc--ceEEEeeeccccceeeeeeEEEecccCCccCcEecceEEEEec
Confidence            566778899999999999998743  343332111   00000001   12224456799999999987

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=89.90  E-value=0.1  Score=42.69  Aligned_cols=64  Identities=17%  Similarity=0.114  Sum_probs=40.2

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCC---eEE-EEecCCcccccCCCCCCCCCceeEecCE-EEEcCCC-ChHHHHHHh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGN---CMN-VYISESKNLRNWDGVSPLQPELTLIPKL-VVNSAGL-SAPALAKRF   75 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~---~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~-VV~aaG~-wa~~l~~~~   75 (240)
                      +...+.+.+.+|.+++.|+.|..+++   +.+ |...+...         ...++.+.|+. ||+|||+ .+.+|+...
T Consensus       200 ~l~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g---------~~~~~~v~a~~eVILsAGaI~TP~LLl~S  269 (351)
T d1ju2a1         200 LLNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNG---------TPHQAFVRSKGEVIVSAGTIGTPQLLLLS  269 (351)
T ss_dssp             GGGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTS---------CEEEEEEEEEEEEEECCHHHHHHHHHHHT
T ss_pred             hhccchhhhhhhhccchhhceeeeccccceeeEEEEEeCCC---------ceEEEEeecCcEEEEeCccccCHHHHHHc
Confidence            44456678999999999999987542   333 44432210         11233466765 9999986 455676555

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.01  E-value=0.17  Score=38.00  Aligned_cols=28  Identities=29%  Similarity=0.247  Sum_probs=24.9

Q ss_pred             CEEEEeCCCCchHhhhHHHHHHHHHHHh
Q 026314          212 GLVNLFGIESPGLTSSMAIAEYVAAKFL  239 (240)
Q Consensus       212 ~~~~~~G~~~~G~t~ap~~g~~va~~i~  239 (240)
                      .++++.|++|.|++++.++|..+++++.
T Consensus       211 ~vvh~yghgg~G~~l~~G~a~~~~~lv~  238 (246)
T d1kifa1         211 EVIHNYGHGGYGLTIHWGCALEVAKLFG  238 (246)
T ss_dssp             EEEEEECCGGGHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCeEEeehHHHHHHHHHHH
Confidence            3779999999999999999999988763

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=87.95  E-value=0.2  Score=37.28  Aligned_cols=44  Identities=16%  Similarity=0.073  Sum_probs=38.0

Q ss_pred             HHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            8 ENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         8 ~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      +..+.+++.+++|+.+...++.+.|++++|+               .+++|.++.+...
T Consensus       221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~---------------~~~~d~~~~~~~~  264 (347)
T d1b5qa1         221 KIVDPRLQLNKVVREIKYSPGGVTVKTEDNS---------------VYSADYVMVSASL  264 (347)
T ss_dssp             CBCCTTEESSCCEEEEEECSSCEEEEETTSC---------------EEEESEEEECSCH
T ss_pred             hhcccccccccccccccccCccEEEEECCCC---------------EEEcCEEEeecCH
Confidence            4457899999999999999988999998884               7999999998764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.08  E-value=0.45  Score=34.81  Aligned_cols=48  Identities=15%  Similarity=0.296  Sum_probs=38.9

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCC
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLS   67 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~w   67 (240)
                      +.+.+++.|+++... +|+++...++.+.+++..+                .+.+|.++.+.|.-
T Consensus        73 ~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~----------------~~~~~~~~~a~g~~  120 (192)
T d1vdca1          73 FRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSK----------------AILADAVILAIGAV  120 (192)
T ss_dssp             HHHHHHHTTCEEECC-CCCEEECSSSSEEEECSSE----------------EEEEEEEEECCCEE
T ss_pred             HHHHHHhhcceeeee-eEEecccccCcEEecccce----------------eeeeeeEEEEeeee
Confidence            345677889999865 7899988777788888766                79999999999973

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.80  E-value=0.63  Score=33.15  Aligned_cols=60  Identities=13%  Similarity=0.035  Sum_probs=37.6

Q ss_pred             hHHHHHCCcEEEcCceEEEEEEeCCeEE-EE---ecCCcccccCCCCCCCCCceeEecCEEEEcCCC
Q 026314            4 QGEAENHGTTFSNNTSVIGGHLEGNCMN-VY---ISESKNLRNWDGVSPLQPELTLIPKLVVNSAGL   66 (240)
Q Consensus         4 ~~~A~~~Ga~i~~~~~V~~i~~~~~~~~-V~---t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~   66 (240)
                      ...|...|.+++.+...+.+...+++.. +.   +...+++.   ..-..+++++|.||.||+|.|.
T Consensus        90 ~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v~~~~~e~d~~G~---~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3          90 VELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGK---WNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSC---EEEEEEEEEEEECSEEEECSCE
T ss_pred             eeecccccceeEeccccEEEEecCCceEEEEEEEeeECCCCC---EecCCCCEEEEECCEEEECcCc
Confidence            3567788999999998888887776442 22   11000000   0001245678999999999983

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.42  E-value=1.1  Score=38.31  Aligned_cols=50  Identities=12%  Similarity=0.014  Sum_probs=40.6

Q ss_pred             ChhhHHHHHCCcEEEcCceEEEEEEe--CCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            1 MWVQGEAENHGTTFSNNTSVIGGHLE--GNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         1 ~al~~~A~~~Ga~i~~~~~V~~i~~~--~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      |++.|.+.=.|+.+..+++|..|...  ++++. |.++.|.               ++.|++||...-
T Consensus       380 Q~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~g~---------------~i~~k~vI~~ps  432 (491)
T d1vg0a1         380 QCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQ---------------RIISKHFIIEDS  432 (491)
T ss_dssp             HHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSC---------------EEECSEEEEEGG
T ss_pred             HHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccCCc---------------EEecCeEEECHH
Confidence            57889999999999999999999874  44564 7777773               799999987654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.81  E-value=1.4  Score=31.82  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=39.4

Q ss_pred             hhHHHHHCCcEEEcCceEEEEEEeCCeEEEEecCCcccccCCCCCCCCCceeEecCEEEEcCCCCh
Q 026314            3 VQGEAENHGTTFSNNTSVIGGHLEGNCMNVYISESKNLRNWDGVSPLQPELTLIPKLVVNSAGLSA   68 (240)
Q Consensus         3 l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG~wa   68 (240)
                      +...+.+.|.++.. .+|+.+...++.+.|++...                .+.++.||+++|.-.
T Consensus        68 ~~~~~~~~~~~~~~-~~V~~~~~~~~~~~v~~~~~----------------~~~~~~viva~G~~~  116 (190)
T d1trba1          68 MHEHATKFETEIIF-DHINKVDLQNRPFRLNGDNG----------------EYTCDALIIATGASA  116 (190)
T ss_dssp             HHHHHHHTTCEEEC-CCEEEEECSSSSEEEEESSC----------------EEEEEEEEECCCEEE
T ss_pred             HHHHHHhcCcEEec-ceeEEEecCCCcEEEEEeee----------------eEeeeeeeeecceee
Confidence            34567788998886 47999888888788888776                899999999999743

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.83  E-value=3.6  Score=27.80  Aligned_cols=48  Identities=13%  Similarity=0.049  Sum_probs=34.0

Q ss_pred             HCCcEEEcCceEEEEEEeCCeEE-EEecCCcccccCCCCCCCCCceeEecCEEEEcCC
Q 026314            9 NHGTTFSNNTSVIGGHLEGNCMN-VYISESKNLRNWDGVSPLQPELTLIPKLVVNSAG   65 (240)
Q Consensus         9 ~~Ga~i~~~~~V~~i~~~~~~~~-V~t~~g~~~~~~~~~~~~~~~~~i~a~~VV~aaG   65 (240)
                      +.+..++.+++++.|.-++.+++ |+..+..+         ++++.++.+|.|+++.|
T Consensus        78 ~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~---------~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          78 NGNIILHTNRTLEEVTGDQMGVTGVRLRDTQN---------SDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             TSSEEEECSCEEEEEEECSSSEEEEEEECCTT---------CCCCEEEECSEEEECSC
T ss_pred             ccceeEecceEEEEEECCCCceEEEEEEECCC---------CceEEEEECCEEEEEeC
Confidence            35789999999999987665564 66554321         11234799999999876