Citrus Sinensis ID: 026320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | 2.2.26 [Sep-21-2011] | |||||||
| O27710 | 258 | Phosphosulfolactate synth | yes | no | 0.841 | 0.782 | 0.242 | 1e-07 | |
| Q57703 | 251 | Phosphosulfolactate synth | yes | no | 0.833 | 0.796 | 0.232 | 2e-06 |
| >sp|O27710|PSLS_METTH Phosphosulfolactate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=comA PE=3 SV=1 | Back alignment and function desciption |
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Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 63
+VD +KF G+ L + ++E V DV G I + +EY ++ +
Sbjct: 43 YVDFIKFGWGTLPLHRRDTVKEKVDMYRSFDVEPYPGGTLFE-IAHLNDKVEEYFQEARS 101
Query: 64 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123
+GF+T+E++ G++EI E R + + G F V+ +RDR
Sbjct: 102 LGFETLEISNGTVEIETEEKCRLIEMAVDEG------FMVLSEVGKKDPERDRLL----- 150
Query: 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKVIG 177
+ D +R L AGA M+++++ + + ++R D +
Sbjct: 151 ----------EPDDRVRLVRADLRAGASMVLMEARESGQNIGIYDERGNIREDEFNHLTD 200
Query: 178 RLGLEKTMFEATNPRTSEWFIRRYGPKVNL-FVDHSQVMDLEC----LRGRNLGK 227
RL +++ ++EA +FI + GP VNL + ++ LE LRG LGK
Sbjct: 201 RLPMDRIIWEAPQKSQQVYFILKIGPDVNLGNIPPEEITALETIRRGLRGDTLGK 255
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 4EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 9 |
| >sp|Q57703|PSLS_METJA Phosphosulfolactate synthase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=comA PE=1 SV=1 | Back alignment and function description |
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Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 41/241 (17%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-STGDWAEHLIRNGPSAFKEYVED 60
G ++D +KF G+ +++ + ++E + + V G E+ G F E++ +
Sbjct: 36 GDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK--FDEFLNE 93
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
C+++GF+ +E++ GS +I E ++ K G F V+ D+D+
Sbjct: 94 CEKLGFEAVEISDGSSDISLEERKNAIKRAKDNG------FMVLTEVGKKMPDKDKQL-- 145
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK---------HADSLRADI 171
+D I+ L+AGAD ++I+ + K D+
Sbjct: 146 -------------TIDDRIKLINFDLDAGADYVIIEGRESGKGIGLFDKEGKVKENELDV 192
Query: 172 IAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC----LRGRNLG 226
+AK + + K +FEA FI ++G VNL + +V+ LE LRG G
Sbjct: 193 LAK---NVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFG 249
Query: 227 K 227
K
Sbjct: 250 K 250
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Catalyzes the addition of sulfite to phosphoenolpyruvate (PEP) to yield (2R)-phospho-3-sulfolactate (PSL). Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 4 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | ||||||
| 449454694 | 286 | PREDICTED: uncharacterized protein LOC10 | 0.991 | 0.832 | 0.802 | 1e-112 | |
| 359497487 | 240 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 1.0 | 0.791 | 1e-110 | |
| 30685384 | 286 | Aldolase-type TIM barrel family protein | 0.995 | 0.835 | 0.766 | 1e-109 | |
| 224116330 | 291 | predicted protein [Populus trichocarpa] | 1.0 | 0.824 | 0.771 | 1e-107 | |
| 356524766 | 286 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.839 | 0.75 | 1e-105 | |
| 255555077 | 277 | furin, putative [Ricinus communis] gi|22 | 0.937 | 0.812 | 0.782 | 1e-103 | |
| 350534450 | 286 | phosphosulfolactate synthase-related pro | 1.0 | 0.839 | 0.704 | 1e-100 | |
| 297804020 | 1745 | hypothetical protein ARALYDRAFT_329472 [ | 0.933 | 0.128 | 0.674 | 2e-98 | |
| 3402751 | 1736 | putative protein [Arabidopsis thaliana] | 0.933 | 0.129 | 0.669 | 7e-98 | |
| 326530436 | 294 | predicted protein [Hordeum vulgare subsp | 1.0 | 0.816 | 0.691 | 1e-96 |
| >gi|449454694|ref|XP_004145089.1| PREDICTED: uncharacterized protein LOC101208408 [Cucumis sativus] gi|449473349|ref|XP_004153856.1| PREDICTED: uncharacterized protein LOC101220954 [Cucumis sativus] gi|449488403|ref|XP_004158021.1| PREDICTED: uncharacterized protein LOC101228109 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 191/238 (80%), Positives = 217/238 (91%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
+GQFVDGLKFSGGSHSL+P+ F++EV + AH+HDVYVSTGDWAEHL+R GPS FKEYVE+
Sbjct: 47 LGQFVDGLKFSGGSHSLLPRDFMKEVTEMAHRHDVYVSTGDWAEHLLRKGPSGFKEYVEE 106
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK +GFDTIELNVGSL++PEETLLRYVRL+K+ GL+AKP+FAV FNKSDIP +RAFGA
Sbjct: 107 CKLLGFDTIELNVGSLDVPEETLLRYVRLIKNGGLRAKPQFAVKFNKSDIPISGNRAFGA 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
Y+ PRS+E VEDVDLLIRRAERCLEAGADMIMID+DDV KHA+ LRADIIAK+IGRLG
Sbjct: 167 YIVPKPRSSELVEDVDLLIRRAERCLEAGADMIMIDADDVSKHAEFLRADIIAKIIGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYF 238
LEKTMFEA+NP+TSEWFI YGPKVNLFVDHSQVMDLECLRGRNLGK+H S+L SSYF
Sbjct: 227 LEKTMFEASNPQTSEWFINHYGPKVNLFVDHSQVMDLECLRGRNLGKNHSSILGSSYF 284
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497487|ref|XP_003635536.1| PREDICTED: uncharacterized protein LOC100854177 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/240 (79%), Positives = 214/240 (89%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKF+GGSHSLMPK FI+EV AH+HDVYVSTGDWAEHL GPSAFKEY+E+
Sbjct: 1 MGQFVDGLKFAGGSHSLMPKNFIKEVTDMAHKHDVYVSTGDWAEHLRGKGPSAFKEYIEE 60
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK +GFDTIELNVGSL IPEETLLR+VRL+KS G+KAKP+F + N+SDIP DRAFGA
Sbjct: 61 CKHLGFDTIELNVGSLGIPEETLLRFVRLIKSDGMKAKPQFTLKINRSDIPIGGDRAFGA 120
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
Y+ P++ E VEDVDLLIRRAERCLEAGADMIMID+DDVCK+ADS+RAD+IAKVIGRLG
Sbjct: 121 YIVPQPQTYEMVEDVDLLIRRAERCLEAGADMIMIDADDVCKYADSVRADVIAKVIGRLG 180
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 240
LEKTMFEA++ +TSEWFI+ YGPKVNLFVDHSQVMDLECLRGRNLGK+H SVL SSYFL
Sbjct: 181 LEKTMFEASSAQTSEWFIKHYGPKVNLFVDHSQVMDLECLRGRNLGKNHTSVLGSSYFLF 240
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685384|ref|NP_567623.2| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] gi|26452567|dbj|BAC43368.1| unknown protein [Arabidopsis thaliana] gi|332659039|gb|AEE84439.1| Aldolase-type TIM barrel family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust.
Identities = 184/240 (76%), Positives = 218/240 (90%), Gaps = 1/240 (0%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKFSGGS+SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+
Sbjct: 48 MGQFVDGLKFSGGSNSLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEE 107
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CKQ+GFDTIELN LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+
Sbjct: 108 CKQLGFDTIELNANLLEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGS 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
YV PRS+E+VED+DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG
Sbjct: 167 YVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 240
+EKTMFEA++ + EWFI+RYGP VNL+VDHSQ+MDLECLRGR+LGK H+SVLSSSYFL
Sbjct: 227 IEKTMFEASDAKLVEWFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSYFLF 286
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116330|ref|XP_002317271.1| predicted protein [Populus trichocarpa] gi|222860336|gb|EEE97883.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust.
Identities = 186/241 (77%), Positives = 209/241 (86%), Gaps = 1/241 (0%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKFSGGSHSLMPK FI+EVV AH+HDVYVSTGDWAEHL+ GP+AFKEYVE+
Sbjct: 51 MGQFVDGLKFSGGSHSLMPKSFIKEVVDMAHKHDVYVSTGDWAEHLLHKGPTAFKEYVEE 110
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK +GFDTIELNVGSL +PEETLLRYVRL+KS GLKAKP+FAV FN+SDIP RAFGA
Sbjct: 111 CKSMGFDTIELNVGSLGVPEETLLRYVRLIKSGGLKAKPQFAVKFNRSDIPIGGHRAFGA 170
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
YV PRS+E VEDV+LLI AERCLEAGADMIMID+DD+CK DSLRADI+ KVIGRLG
Sbjct: 171 YVPPTPRSSELVEDVNLLINMAERCLEAGADMIMIDADDICKDVDSLRADIVVKVIGRLG 230
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR-GRNLGKSHRSVLSSSYFL 239
LEKTMFEA+N +T++WFI+RYGPKVNLFVDHSQV+ LECLR G N+G+ S L SSYFL
Sbjct: 231 LEKTMFEASNTKTADWFIKRYGPKVNLFVDHSQVIGLECLRGGHNMGRRQASALGSSYFL 290
Query: 240 L 240
Sbjct: 291 F 291
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524766|ref|XP_003530999.1| PREDICTED: uncharacterized protein LOC100805668 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/240 (75%), Positives = 208/240 (86%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MG +VDGLKFSGGSHS+MPK I++++ AHQHDVYVSTGDWAEH+I PS FKEYVE+
Sbjct: 47 MGDYVDGLKFSGGSHSMMPKATIKQIIDMAHQHDVYVSTGDWAEHMISKSPSGFKEYVEE 106
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CKQ+GFDTIELNVGSLEIPEET LR+VRLVKS GLKAKP F V FN+SDIP DRA+GA
Sbjct: 107 CKQLGFDTIELNVGSLEIPEETFLRFVRLVKSGGLKAKPHFQVKFNESDIPKGGDRAYGA 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
Y+ PRS E VEDV+LLIRRAERCLEAGADMIMID+DDV KHAD++RADIIAK+IGRLG
Sbjct: 167 YIPPVPRSFELVEDVNLLIRRAERCLEAGADMIMIDADDVSKHADNMRADIIAKIIGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 240
+EKTMFEA+N R SEWFI++YGPKVNLF+DHS V+D+ECLRGRNLG++ S L +S FL
Sbjct: 227 IEKTMFEASNQRISEWFIKQYGPKVNLFIDHSNVVDVECLRGRNLGRNLASFLGASDFLF 286
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255555077|ref|XP_002518576.1| furin, putative [Ricinus communis] gi|223542421|gb|EEF43963.1| furin, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 176/225 (78%), Positives = 203/225 (90%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKFSGGSHSLMP+ FI++V+ AHQHD+YVSTGDWAEHL+ GPSAFK+YVE+
Sbjct: 48 MGQFVDGLKFSGGSHSLMPRSFIKDVIDMAHQHDIYVSTGDWAEHLLHKGPSAFKDYVEE 107
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK +GFDTIELNVGSL +PEETLLRYVRL+KSA LKAKP+FA FNKSDIP +RAFGA
Sbjct: 108 CKNMGFDTIELNVGSLGVPEETLLRYVRLIKSADLKAKPQFAAKFNKSDIPIGGNRAFGA 167
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
Y+ P+S E +ED+DLLIRRAERCL+AGADMIMID+DD+CK A+SLRADIIAKVIGRLG
Sbjct: 168 YMPPTPQSFELIEDIDLLIRRAERCLKAGADMIMIDADDICKDAESLRADIIAKVIGRLG 227
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNL 225
LEKTMFEA+N +T+EWFI+ YGPKVNLF+DHSQV+ LECLRGRNL
Sbjct: 228 LEKTMFEASNSKTTEWFIKHYGPKVNLFIDHSQVIGLECLRGRNL 272
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350534450|ref|NP_001234653.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] gi|54639895|gb|AAV36519.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] gi|54639897|gb|AAV36520.1| phosphosulfolactate synthase-related protein [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/240 (70%), Positives = 209/240 (87%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MG FVDGLK GSH++MPK +I+EV AH+H+VYVS+GD A+ ++ GPS+ KEY+E+
Sbjct: 47 MGHFVDGLKLCDGSHTVMPKNYIKEVTDMAHKHNVYVSSGDSADQMLFRGPSSLKEYIEE 106
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CKQ+GFD+IEL+V SL +PEETLLRYVRL+KS+GL+AKP+F+V FNKSDI DRAFGA
Sbjct: 107 CKQLGFDSIELDVASLGLPEETLLRYVRLIKSSGLRAKPQFSVKFNKSDIAFAGDRAFGA 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
YV AP+++E VEDVDLL+RRAERCLEAGADMIMI++DD+C+ A LR+DI+AK++GRLG
Sbjct: 167 YVIPAPQTSEMVEDVDLLVRRAERCLEAGADMIMINADDLCRQAGLLRSDIVAKIVGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 240
LEKTMFEA+NP+ SEWF++RYGPKVNL VDHSQVMDLECLRGRNLG++H SVL SYFLL
Sbjct: 227 LEKTMFEASNPKISEWFVKRYGPKVNLIVDHSQVMDLECLRGRNLGQNHSSVLGRSYFLL 286
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Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804020|ref|XP_002869894.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] gi|297315730|gb|EFH46153.1| hypothetical protein ARALYDRAFT_329472 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/255 (67%), Positives = 207/255 (81%), Gaps = 31/255 (12%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKFSGGS+SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+
Sbjct: 48 MGQFVDGLKFSGGSNSLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEE 107
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CKQ+GFDTIELN SLE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+
Sbjct: 108 CKQLGFDTIELNANSLEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGS 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
YV PRS+E+VED+DLLIR+AERCLEAGAD IMID+DDVCK+ DSLRADIIAKVIGRLG
Sbjct: 167 YVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYPDSLRADIIAKVIGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGP------------------------------KVNLFVD 210
+EKTMFEA++ + +EWFI+RYGP +VNL+VD
Sbjct: 227 IEKTMFEASDGKLAEWFIKRYGPNVFADTPLYYFYLLFEWSPSQDSCLFVLVFQVNLYVD 286
Query: 211 HSQVMDLECLRGRNL 225
HSQ+MDLECLRGR+L
Sbjct: 287 HSQIMDLECLRGRHL 301
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3402751|emb|CAA20197.1| putative protein [Arabidopsis thaliana] gi|7268928|emb|CAB79131.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 362 bits (929), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 172/257 (66%), Positives = 206/257 (80%), Gaps = 33/257 (12%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKFSGGS+SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+
Sbjct: 48 MGQFVDGLKFSGGSNSLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEE 107
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CKQ+GFDTIELN LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+
Sbjct: 108 CKQLGFDTIELNANLLEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGS 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
YV PRS+E+VED+DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG
Sbjct: 167 YVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGP--------------------------------KVNLF 208
+EKTMFEA++ + EWFI+RYGP +VNL+
Sbjct: 227 IEKTMFEASDAKLVEWFIKRYGPNVFADTLVLSIIFNLLFEWSPSQDSYLFVLVFQVNLY 286
Query: 209 VDHSQVMDLECLRGRNL 225
VDHSQ+MDLECLRGR+L
Sbjct: 287 VDHSQIMDLECLRGRHL 303
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|326530436|dbj|BAJ97644.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/240 (69%), Positives = 204/240 (85%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
+G FVDGLKFSGGSHSLM K I E+ AH+HD+YVSTGDWAEHL+R GPS+FK+YVE+
Sbjct: 55 LGPFVDGLKFSGGSHSLMGKELIREITDLAHKHDMYVSTGDWAEHLLRQGPSSFKQYVEE 114
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK++GFDTIELN GSL++PEE +LR VRL+K+ GL+AKP F+V F+ S++P+ DRAFGA
Sbjct: 115 CKELGFDTIELNAGSLKLPEEAILRLVRLIKNTGLRAKPLFSVKFDSSEMPAAGDRAFGA 174
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
Y+A RS+E VEDVDLLIRRAERCLEAGADMIMID+DDVC+ DSLRADIIAKV+GRLG
Sbjct: 175 YIAPVKRSSERVEDVDLLIRRAERCLEAGADMIMIDADDVCQRTDSLRADIIAKVVGRLG 234
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFLL 240
LEKTMFE +N TSEWF++RYGP+VNLF DHS+VM+LE LRG ++ + R +L S +FL+
Sbjct: 235 LEKTMFETSNANTSEWFVKRYGPRVNLFADHSEVMNLERLRGLDVRRRVRPLLPSPFFLM 294
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Source: Hordeum vulgare subsp. vulgare Species: Hordeum vulgare Genus: Hordeum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 240 | ||||||
| TAIR|locus:2141196 | 286 | HSA32 "HEAT-STRESS-ASSOCIATED | 0.991 | 0.832 | 0.769 | 7.9e-101 | |
| UNIPROTKB|Q653W2 | 302 | P0547F09.36 "Phosphosulfolacta | 1.0 | 0.794 | 0.683 | 1.7e-89 | |
| ASPGD|ASPL0000047680 | 342 | AN10197 [Emericella nidulans ( | 0.875 | 0.614 | 0.391 | 2.4e-37 | |
| UNIPROTKB|Q5BDB6 | 1107 | AN1464.2 "Putative uncharacter | 0.875 | 0.189 | 0.391 | 4e-36 | |
| UNIPROTKB|Q83AE7 | 290 | CBU_1954 "(2R)-phospho-3-sulfo | 0.879 | 0.727 | 0.284 | 6.1e-23 | |
| TIGR_CMR|CBU_1954 | 290 | CBU_1954 "hypothetical protein | 0.879 | 0.727 | 0.284 | 6.1e-23 |
| TAIR|locus:2141196 HSA32 "HEAT-STRESS-ASSOCIATED 32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
Identities = 184/239 (76%), Positives = 218/239 (91%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
MGQFVDGLKFSGGS+SL+PK FI++ ++ AH+H VYVSTGDWAEH++R+GPSAFK+YVE+
Sbjct: 48 MGQFVDGLKFSGGSNSLIPKSFIKQAIEMAHEHGVYVSTGDWAEHMLRSGPSAFKDYVEE 107
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CKQ+GFDTIELN LE+PEETLLRYVRL+K+ GL+AKP FAV FNKSDIP R+RAFG+
Sbjct: 108 CKQLGFDTIELNANLLEVPEETLLRYVRLIKNGGLRAKPMFAVKFNKSDIPG-RNRAFGS 166
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
YV PRS+E+VED+DLLIR+AERCLEAGAD IMID+DDVCK+ADSLRADIIAKVIGRLG
Sbjct: 167 YVVPEPRSSEFVEDIDLLIRKAERCLEAGADTIMIDADDVCKYADSLRADIIAKVIGRLG 226
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGKSHRSVLSSSYFL 239
+EKTMFEA++ + EWFI+RYGP VNL+VDHSQ+MDLECLRGR+LGK H+SVLSSSYFL
Sbjct: 227 IEKTMFEASDAKLVEWFIKRYGPNVNLYVDHSQIMDLECLRGRHLGKDHQSVLSSSYFL 285
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| UNIPROTKB|Q653W2 P0547F09.36 "Phosphosulfolactate synthase-related protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 166/243 (68%), Positives = 204/243 (83%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
+G FVDGLKF+GGSHSLM K + E+ AH+HD+YVSTGDWAEHL+R GPS FK+YVE+
Sbjct: 60 LGPFVDGLKFTGGSHSLMGKELVREITDLAHKHDIYVSTGDWAEHLLRQGPSFFKQYVEE 119
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK +GFDTIELN GSL++PEE LLR VRL+K++GL+AKP F+V F+ SDIP DRAFGA
Sbjct: 120 CKALGFDTIELNAGSLKLPEEALLRLVRLIKTSGLQAKPLFSVKFDSSDIPPSGDRAFGA 179
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180
Y+ +++E VEDVDLLIRRAERCLEAGADMIMID+DD+C+ ADSLRADI+AK++GRLG
Sbjct: 180 YIVPVKQNSERVEDVDLLIRRAERCLEAGADMIMIDADDICQRADSLRADIVAKIVGRLG 239
Query: 181 LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNL-GKSHRSV--LSSSY 237
LEKTMFEA+NP TSEWF+RRYGP+VNLFVDHS VM+LE LRG N+ G + + + S +
Sbjct: 240 LEKTMFEASNPNTSEWFVRRYGPRVNLFVDHSDVMNLERLRGFNMRGVCNSPLFGIGSPF 299
Query: 238 FLL 240
FL+
Sbjct: 300 FLM 302
|
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| ASPGD|ASPL0000047680 AN10197 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
Identities = 94/240 (39%), Positives = 134/240 (55%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYV 58
MG VDGLKF+GGS SL P+ + E++ AH+H VYVSTG WAEHL+ + P S F +Y+
Sbjct: 95 MGTHVDGLKFAGGSFSLFPEKPLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYL 154
Query: 59 EDCKQVGF-----------------DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101
C+ +GF D IEL+ G L IPE+ LR V V S GLKAKP+
Sbjct: 155 TKCEDLGFVMLNLVPFRVLTLHHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPEL 214
Query: 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161
+ F G + A + D L+ + L+AG + +MI+S+ +
Sbjct: 215 GIQFGA-----------GGDTSAAGLESLGTSDPGKLVNLGRKFLDAGVERLMIESEGIT 263
Query: 162 KHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR 221
++ S R D+++K++ L E+ MFEA +P+ W+IR +G VNLFVDHSQ++ L LR
Sbjct: 264 ENVKSWRTDVVSKIMKELPPERVMFEAADPQVYTWYIREFGIDVNLFVDHSQIVQLSGLR 323
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| UNIPROTKB|Q5BDB6 AN1464.2 "Putative uncharacterized protein" [Aspergillus nidulans FGSC A4 (taxid:227321)] | Back alignment and assigned GO terms |
|---|
Score = 401 (146.2 bits), Expect = 4.0e-36, P = 4.0e-36
Identities = 94/240 (39%), Positives = 134/240 (55%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GP-SAFKEYV 58
MG VDGLKF+GGS SL P+ + E++ AH+H VYVSTG WAEHL+ + P S F +Y+
Sbjct: 95 MGTHVDGLKFAGGSFSLFPEKPLRELIDLAHEHSVYVSTGGWAEHLLTHPDPTSVFDKYL 154
Query: 59 EDCKQVGF-----------------DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101
C+ +GF D IEL+ G L IPE+ LR V V S GLKAKP+
Sbjct: 155 TKCEDLGFVMLNLVPFRVLTLHHRFDVIELSSGFLSIPEDDWLRLVDKVHSYGLKAKPEL 214
Query: 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161
+ F G + A + D L+ + L+AG + +MI+S+ +
Sbjct: 215 GIQFGA-----------GGDTSAAGLESLGTSDPGKLVNLGRKFLDAGVERLMIESEGIT 263
Query: 162 KHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLR 221
++ S R D+++K++ L E+ MFEA +P+ W+IR +G VNLFVDHSQ++ L LR
Sbjct: 264 ENVKSWRTDVVSKIMKELPPERVMFEAADPQVYTWYIREFGIDVNLFVDHSQIVQLSGLR 323
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| UNIPROTKB|Q83AE7 CBU_1954 "(2R)-phospho-3-sulfolactate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 66/232 (28%), Positives = 121/232 (52%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 61
G ++DGLKF+GG +L+ ++ AH+++VYV+TG + E ++ P+ Y+E+
Sbjct: 51 GYYIDGLKFAGGIQALLDAKTVKAFTDLAHKYNVYVNTGGFIERIVIQNPNNVDRYLEET 110
Query: 62 KQVGFDTIELNVGSLEIPEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 117
K +GFD +E++ G E + L + V+ ++ GLK KP+ +M S +
Sbjct: 111 KALGFDVVEVSSGMFERAGDFSLDFQIDVVKRIQKIGLKPKPEITIM---SGVGGGVKEI 167
Query: 118 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-AD--SLRADIIAK 174
+Y + +S + VD I ER EAGA +MI+S+ + + AD + R D+I
Sbjct: 168 --SYQEKLKQS----KTVDQFIEEGERFFEAGAHTLMIESEGITEGIADPKNWRKDVIFA 221
Query: 175 VIGRLGLEKTMFEATNP-----RTSEWFIRRYGPKVNLFVDHSQVMDLECLR 221
++ + G EK MFE + +T +W+++ +NL ++ +++ R
Sbjct: 222 LVEKFGHEKLMFEVSPEDDEARQTFKWYLKEVSRDINLMMNSKNIVEFNAWR 273
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| TIGR_CMR|CBU_1954 CBU_1954 "hypothetical protein" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 66/232 (28%), Positives = 121/232 (52%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 61
G ++DGLKF+GG +L+ ++ AH+++VYV+TG + E ++ P+ Y+E+
Sbjct: 51 GYYIDGLKFAGGIQALLDAKTVKAFTDLAHKYNVYVNTGGFIERIVIQNPNNVDRYLEET 110
Query: 62 KQVGFDTIELNVGSLEIPEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 117
K +GFD +E++ G E + L + V+ ++ GLK KP+ +M S +
Sbjct: 111 KALGFDVVEVSSGMFERAGDFSLDFQIDVVKRIQKIGLKPKPEITIM---SGVGGGVKEI 167
Query: 118 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-AD--SLRADIIAK 174
+Y + +S + VD I ER EAGA +MI+S+ + + AD + R D+I
Sbjct: 168 --SYQEKLKQS----KTVDQFIEEGERFFEAGAHTLMIESEGITEGIADPKNWRKDVIFA 221
Query: 175 VIGRLGLEKTMFEATNP-----RTSEWFIRRYGPKVNLFVDHSQVMDLECLR 221
++ + G EK MFE + +T +W+++ +NL ++ +++ R
Sbjct: 222 LVEKFGHEKLMFEVSPEDDEARQTFKWYLKEVSRDINLMMNSKNIVEFNAWR 273
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 240 240 0.00093 113 3 11 22 0.40 33
32 0.44 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 6
No. of states in DFA: 598 (64 KB)
Total size of DFA: 187 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.67u 0.12s 19.79t Elapsed: 00:00:01
Total cpu time: 19.67u 0.12s 19.79t Elapsed: 00:00:01
Start: Fri May 10 07:36:08 2013 End: Fri May 10 07:36:09 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 4.4.1.19 | LOW CONFIDENCE prediction! |
| 3rd Layer | 4.4.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00012839001 | SubName- Full=Chromosome undetermined scaffold_405, whole genome shotgun sequence; (286 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 240 | |||
| pfam02679 | 245 | pfam02679, ComA, (2R)-phospho-3-sulfolactate synth | 2e-77 | |
| COG1809 | 258 | COG1809, COG1809, (2R)-phospho-3-sulfolactate synt | 3e-36 | |
| TIGR03849 | 237 | TIGR03849, arch_ComA, phosphosulfolactate synthase | 1e-17 | |
| pfam13654 | 509 | pfam13654, AAA_32, AAA domain | 0.003 | |
| PLN02649 | 560 | PLN02649, PLN02649, glucose-6-phosphate isomerase | 0.004 | |
| PRK11320 | 292 | PRK11320, prpB, 2-methylisocitrate lyase; Provisio | 0.004 |
| >gnl|CDD|190389 pfam02679, ComA, (2R)-phospho-3-sulfolactate synthase (ComA) | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 2e-77
Identities = 80/232 (34%), Positives = 123/232 (53%), Gaps = 28/232 (12%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 60
G ++D LKF G+ +LMP+ ++E + AH+H VYV TG + + F EY+ +
Sbjct: 35 AGDYIDFLKFGWGTSALMPEDILKEKIDLAHEHGVYVYTGGTLFEIAIS-QGKFDEYLRE 93
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
CK++GFD IE++ G++E+PEE LR +R K AG K +
Sbjct: 94 CKELGFDAIEISDGTIELPEEERLRLIRKAKKAGFKVLSE-------------------- 133
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKV 175
V + + D LI + ER LEAGAD ++I++ + +R D++ ++
Sbjct: 134 -VGKKDPELDSSLTPDELIEQIERDLEAGADKVIIEARESGGVGLYDSDGEVRTDLVEEI 192
Query: 176 IGRLGLEKTMFEATNPRTSEWFIRRYGPKVNL-FVDHSQVMDLECLRGRNLG 226
+ RLGLEK +FEA + WFI+R+GP VNL + S+V+ LE LR G
Sbjct: 193 LERLGLEKLIFEAPQKKQQVWFIKRFGPNVNLGNIPPSEVLALETLRRGLRG 244
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In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyzes the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyzes the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalyzed reaction is analogous to those reactions catalyzed by beta-elimination enzymes that proceed through an enolate intermediate. Length = 245 |
| >gnl|CDD|224722 COG1809, COG1809, (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 3e-36
Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 30/231 (12%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 61
G +VD +KF G+ SL+ K ++E + ++D+YV G I EY+ +
Sbjct: 41 GDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGG-TLFEIAYSQDKVDEYLNEA 99
Query: 62 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121
K++GF+ IE++ G++ + E R + G + P + D A
Sbjct: 100 KELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVG-----KKDP-ESDSA---- 149
Query: 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIAKV 175
D ++ ++AGA+ ++ ++ + + + +R + +
Sbjct: 150 -----------LSPDDRVKLINDDVDAGAEYVIAEARESGKEIGITDNEGEVREGELDSI 198
Query: 176 IGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNL 225
I LG+ + +FEA WFI + GP+VNL + +++ LE LR R L
Sbjct: 199 IKGLGINRVIFEAPQKSQQVWFILKIGPEVNLANIPFEEIIALETLR-RGL 248
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Length = 258 |
| >gnl|CDD|163561 TIGR03849, arch_ComA, phosphosulfolactate synthase | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-17
Identities = 57/238 (23%), Positives = 103/238 (43%), Gaps = 35/238 (14%)
Query: 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 60
G ++ +KF G+ +L+ + ++E ++ + + V G E G F EY+ +
Sbjct: 22 GDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFDEYLNE 79
Query: 61 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120
C ++GF+ +E++ GS+EI E + K G F V+ S++
Sbjct: 80 CDELGFEAVEISDGSMEISLEERCNLIERAKDNG------FMVL---SEVGKKSPEKDSE 130
Query: 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH------ADSLRADIIAK 174
D I+ + LEAGAD ++I+ + K+ +++ D +
Sbjct: 131 L------------TPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDV 178
Query: 175 VIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC----LRGRNLGK 227
+ + + K +FEA FI ++GP VNL + +V+ LE LRG GK
Sbjct: 179 LAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLRGDTFGK 236
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This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679 [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Energy metabolism, Methanogenesis]. Length = 237 |
| >gnl|CDD|222290 pfam13654, AAA_32, AAA domain | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.003
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 156 DSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHS 212
D V + D+++ DI+ + L ++ A+ RRY +VNL VD+S
Sbjct: 234 DLPKVLAYLDAVQEDILENLDLFLEEDEAEAAASGAEDQF---RRY--QVNLLVDNS 285
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This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 509 |
| >gnl|CDD|215351 PLN02649, PLN02649, glucose-6-phosphate isomerase | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.004
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 66 FDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125
FD I L+ + +ET+ L ++A L K + MF+ I S DRA RA
Sbjct: 46 FDGIYLDYSRQRVTDETMELLFPLAEAANLFEKIE--AMFSGEIINSTEDRAVLHVALRA 103
Query: 126 PRSTEYVEDVDLLIRRAERCLE 147
PR + D ++ L+
Sbjct: 104 PRLAPILVDGKNVVPEVWEVLD 125
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Length = 560 |
| >gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 132 VEDVDLLIRRAERCLEAGADMI----MIDSDDVCKHADSLRADIIA 173
VE +D I RA+ +EAGADMI M + + + AD+++ I+A
Sbjct: 162 VEGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPILA 207
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Length = 292 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 100.0 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 100.0 | |
| COG1809 | 258 | (2R)-phospho-3-sulfolactate synthase (PSL synthase | 100.0 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 97.51 | |
| PRK13210 | 284 | putative L-xylulose 5-phosphate 3-epimerase; Revie | 96.95 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 96.94 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 96.93 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.93 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.86 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 96.83 | |
| TIGR00542 | 279 | hxl6Piso_put hexulose-6-phosphate isomerase, putat | 96.8 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 96.79 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 96.7 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 96.57 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 96.52 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 96.42 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 96.39 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 96.37 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 96.33 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 96.25 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.2 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 96.17 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 96.15 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 96.1 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 96.09 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 96.01 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 96.0 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 95.98 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 95.97 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 95.94 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 95.89 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 95.88 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 95.88 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 95.87 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 95.84 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 95.74 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 95.73 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 95.72 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 95.67 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 95.65 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 95.6 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 95.52 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 95.44 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.39 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 95.38 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 95.37 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 95.36 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 95.35 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 95.26 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 95.2 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 95.12 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 95.11 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.01 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 94.98 | |
| TIGR03234 | 254 | OH-pyruv-isom hydroxypyruvate isomerase. This enzy | 94.9 | |
| COG1082 | 274 | IolE Sugar phosphate isomerases/epimerases [Carboh | 94.81 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 94.78 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 94.69 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 94.57 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.55 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 94.48 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.43 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 94.36 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 94.22 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 94.11 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 94.09 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 93.9 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 93.89 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 93.85 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 93.82 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 93.8 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 93.77 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 93.76 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 93.7 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 93.66 | |
| PRK07094 | 323 | biotin synthase; Provisional | 93.57 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 93.55 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 93.51 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.49 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 93.42 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 93.4 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 93.39 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 93.31 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 93.29 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 93.25 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 93.24 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.21 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 93.16 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 93.13 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 93.05 | |
| cd06547 | 339 | GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENG | 93.04 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 93.02 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 93.0 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 92.95 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 92.93 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 92.92 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 92.82 | |
| COG3623 | 287 | SgaU Putative L-xylulose-5-phosphate 3-epimerase [ | 92.8 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 92.8 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 92.75 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 92.73 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 92.63 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 92.61 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 92.49 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 92.47 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 92.42 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 92.41 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 92.34 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 92.32 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 92.28 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 92.14 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.13 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 92.09 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 92.08 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 92.08 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 91.99 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 91.93 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 91.9 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 91.66 | |
| TIGR02668 | 302 | moaA_archaeal probable molybdenum cofactor biosynt | 91.6 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 91.49 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 91.45 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.44 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 91.29 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 91.19 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 91.14 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 91.0 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 91.0 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 91.0 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 90.95 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 90.9 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 90.88 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 90.72 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 90.72 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 90.66 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 90.53 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 90.31 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 90.25 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 90.2 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 90.17 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 90.04 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 90.02 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 90.02 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 89.94 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 89.87 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 89.83 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 89.77 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 89.74 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 89.62 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 89.61 | |
| TIGR01211 | 522 | ELP3 histone acetyltransferase, ELP3 family. The S | 89.56 | |
| PF01261 | 213 | AP_endonuc_2: Xylose isomerase-like TIM barrel; In | 89.47 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 89.43 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 89.38 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 89.1 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 88.84 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 88.72 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 88.69 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 88.67 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 88.51 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 88.35 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 88.31 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 88.2 | |
| PLN02591 | 250 | tryptophan synthase | 88.2 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 88.17 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 87.98 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 87.97 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 87.86 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 87.8 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 87.72 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 87.61 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 87.57 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 87.5 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 87.24 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 87.22 | |
| PRK08508 | 279 | biotin synthase; Provisional | 87.2 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 87.09 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 86.99 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 86.93 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 86.88 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 86.83 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 86.76 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 86.47 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 86.41 | |
| PRK09989 | 258 | hypothetical protein; Provisional | 86.33 | |
| smart00642 | 166 | Aamy Alpha-amylase domain. | 86.22 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 86.2 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 85.91 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 85.8 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 85.78 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 85.52 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 85.28 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 85.26 | |
| TIGR03581 | 236 | EF_0839 conserved hypothetical protein EF_0839/AHA | 85.23 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 85.15 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 85.09 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 85.0 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 84.94 | |
| COG2896 | 322 | MoaA Molybdenum cofactor biosynthesis enzyme [Coen | 84.87 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 84.84 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 84.84 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 84.69 | |
| PRK09997 | 258 | hydroxypyruvate isomerase; Provisional | 84.57 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 84.56 | |
| PRK15108 | 345 | biotin synthase; Provisional | 84.47 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 84.25 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 84.17 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 84.04 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 84.03 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 83.93 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 83.82 | |
| TIGR01501 | 134 | MthylAspMutase methylaspartate mutase, S subunit. | 83.76 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 83.35 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 83.34 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 83.28 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 83.22 | |
| smart00481 | 67 | POLIIIAc DNA polymerase alpha chain like domain. D | 83.2 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 83.19 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 83.19 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 83.12 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 82.97 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 82.9 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 82.89 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 82.43 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 82.29 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.24 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 82.21 | |
| TIGR00587 | 274 | nfo apurinic endonuclease (APN1). All proteins in | 82.12 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 81.91 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 81.88 | |
| COG0413 | 268 | PanB Ketopantoate hydroxymethyltransferase [Coenzy | 81.82 | |
| CHL00073 | 457 | chlN photochlorophyllide reductase subunit N | 81.64 | |
| PF01301 | 319 | Glyco_hydro_35: Glycosyl hydrolases family 35; Int | 81.62 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 81.59 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 81.5 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 81.5 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 81.38 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 81.18 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 81.15 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 80.86 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 80.55 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 80.49 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 80.41 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 80.29 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 80.25 | |
| PRK15452 | 443 | putative protease; Provisional | 80.24 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 80.18 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 80.16 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 80.16 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 80.11 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 80.02 | |
| PRK12677 | 384 | xylose isomerase; Provisional | 80.01 |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-81 Score=556.60 Aligned_cols=206 Identities=25% Similarity=0.438 Sum_probs=195.8
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
||+|||++||||||++|||++.|++||++||+|||+|||| ||||+|+.|+ ++++|+++||++||++|||||||++||
T Consensus 21 ~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~~Yl~~~k~lGf~~IEiS~G~~~i~ 98 (237)
T TIGR03849 21 CGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFDEYLNECDELGFEAVEISDGSMEIS 98 (237)
T ss_pred hhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 6999999999999999999999999999999999999996 6999999998 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|++++++||+|+||+|+|++.. +. ..+++++|+++++||+|||++||||||
T Consensus 99 ~~~~~rlI~~~~~~g~~v~~EvG~K~~~~------~~---------------~~~~~~~i~~~~~~LeAGA~~ViiEarE 157 (237)
T TIGR03849 99 LEERCNLIERAKDNGFMVLSEVGKKSPEK------DS---------------ELTPDDRIKLINKDLEAGADYVIIEGRE 157 (237)
T ss_pred HHHHHHHHHHHHhCCCeEeccccccCCcc------cc---------------cCCHHHHHHHHHHHHHCCCcEEEEeehh
Confidence 99999999999999999999999998521 11 125899999999999999999999996
Q ss_pred -----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCc
Q 026320 159 -----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 229 (240)
Q Consensus 159 -----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~ 229 (240)
|||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||| |+|+||++|||||+|+||.+.
T Consensus 158 sg~~~Gi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~LE~LR~GLrgDT~ 234 (237)
T TIGR03849 158 SGKNIGLFDEKGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISLETLRRGLRGDTF 234 (237)
T ss_pred cCCCcceeCCCCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhcccccccc
Confidence 89999999999999999999999999999999999999999999999997 999999999999999998665
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-81 Score=561.31 Aligned_cols=204 Identities=41% Similarity=0.714 Sum_probs=170.3
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+|+|||++|||||||+|||++.|++||++||+|||+|||| |+||+|++|+ ++++|+++||++||++|||||||++||
T Consensus 34 ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~ 111 (244)
T PF02679_consen 34 AGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLP 111 (244)
T ss_dssp HGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---
T ss_pred hhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCC
Confidence 5899999999999999999999999999999999999996 7999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|++++++||+|+||||+|++..+. ..|+++||+++++||+|||++||||||
T Consensus 112 ~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~---------------------~~~~~~~i~~~~~dLeAGA~~ViiEarE 170 (244)
T PF02679_consen 112 EEERLRLIRKAKEEGFKVLSEVGKKDPESDF---------------------SLDPEELIEQAKRDLEAGADKVIIEARE 170 (244)
T ss_dssp HHHHHHHHHHHCCTTSEEEEEES-SSHHHHT---------------------T--CCHHHHHHHHHHHHTECEEEE--TT
T ss_pred HHHHHHHHHHHHHCCCEEeecccCCCchhcc---------------------cCCHHHHHHHHHHHHHCCCCEEEEeeec
Confidence 9999999999999999999999998753211 235789999999999999999999999
Q ss_pred ----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCC
Q 026320 159 ----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 159 ----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~ 227 (240)
|||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||| |+|+||++|||||+|+||.
T Consensus 171 sG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~I~~~G~~VNLgNI~~~eVl~LE~LR~GLrgD 244 (244)
T PF02679_consen 171 SGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWFIKRFGPNVNLGNIAPSEVLALETLRRGLRGD 244 (244)
T ss_dssp T--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHHHHH-TT--EEEEEGGGHHHHHHHHCT-SGG
T ss_pred cCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHHHHHhCCCcCcccCCHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999983
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=496.55 Aligned_cols=208 Identities=25% Similarity=0.460 Sum_probs=196.8
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
.|+|||++||||||++|.+++.+++||++||+||++|||| |+||+++.|+ ++++|+++|+++||++|||||||++|+
T Consensus 40 agdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~ 117 (258)
T COG1809 40 AGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMS 117 (258)
T ss_pred hhhheeeeeecccccccccHHHHHHHHHHHHHcCceecCCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecc
Confidence 4899999999999999999999999999999999999995 8999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
.++||++|+++.+.||+|+||+|+|.+. .++. .+++++++.+..|++|||++||+|||
T Consensus 118 ~eek~~lIe~a~d~Gf~vlsEvGkk~~e------~~~~---------------l~~~d~~k~i~~dvdaGa~~vi~eAre 176 (258)
T COG1809 118 TEEKCRLIERAVDEGFMVLSEVGKKDPE------SDSA---------------LSPDDRVKLINDDVDAGAEYVIAEARE 176 (258)
T ss_pred hHHHHHHHHHHHhcccEEehhhcccCcc------hhhh---------------cChHHHHHHHHHHHHcchHHhhhhhhh
Confidence 9999999999999999999999999863 2221 25899999999999999999999998
Q ss_pred -----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCccc
Q 026320 159 -----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSHRS 231 (240)
Q Consensus 159 -----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~~~ 231 (240)
|||++.|+||++.++.|++++|++|+|||||+|.||+|||++|||+|||+ |||+||++|||||+|+||.+..-
T Consensus 177 sg~~~Gi~~~~g~~r~~~~~~ii~~l~i~rviFEAp~k~qq~~fI~k~GpevNLanip~~eii~LEtLR~gLrgdT~gr 255 (258)
T COG1809 177 SGKEIGITDNEGEVREGELDSIIKGLGINRVIFEAPQKSQQVWFILKIGPEVNLANIPFEEIIALETLRRGLRGDTFGR 255 (258)
T ss_pred hccccCccccccchhhhHHHHHHhcCCchheeeecCCcchhhhHHHHhCCcCcccCCCHHHHHHHHHHHhhccccchhh
Confidence 89999999999999999999999999999999999999999999999999 99999999999999998865543
|
|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0017 Score=57.83 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=93.9
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCC
Q 026320 41 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPS 112 (240)
Q Consensus 41 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~ 112 (240)
+.+|+++.++ -.+++.++.++++||++||++-+. ..++.++..++-+.+++.|+++.+-. +...+. ..+
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~-~~~- 87 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRF-PLG- 87 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeEEeccccccc-CCC-
Confidence 5789998765 479999999999999999998543 24477777788888889999875421 110000 011
Q ss_pred ccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCC--Ccc---HHH---HHHHHhccCCCce
Q 026320 113 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLR---ADI---IAKVIGRLGLEKT 184 (240)
Q Consensus 113 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g--~~r---~d~---v~~i~~~~~~~~l 184 (240)
..|+. ......+.+.+.++..-+.|+.+|.+-+........ ... .+. +.++++..|+ +|
T Consensus 88 ~~~~~------------~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV-~i 154 (283)
T PRK13209 88 SEDDA------------VRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASV-TL 154 (283)
T ss_pred CCCHH------------HHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 00100 001123455566677778999999986542211111 100 122 2333344454 57
Q ss_pred EEec---C---CchhHHHHHHHhC-CCcccccCCCCch
Q 026320 185 MFEA---T---NPRTSEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 185 ifEA---P---~k~qQ~~~I~~fG-~~VNLgI~~~dVl 215 (240)
.+|. + ...+-..+++..| |+|.+-.|+.++.
T Consensus 155 ~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~h~~ 192 (283)
T PRK13209 155 AFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIGNLS 192 (283)
T ss_pred EEeecCCcccCCHHHHHHHHHHhCCCccceEeccchHH
Confidence 7775 1 3334556788888 5666656766655
|
|
| >PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.028 Score=49.74 Aligned_cols=159 Identities=15% Similarity=0.226 Sum_probs=89.9
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCC
Q 026320 41 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPS 112 (240)
Q Consensus 41 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~ 112 (240)
|.|+.++-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++-+ +..-.. .-.++
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~- 82 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS-MCLSGHRRFPFG- 82 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE-EecccccCcCCC-
Confidence 3455555442 378999999999999999997322 244667778888899999998653 221000 00111
Q ss_pred ccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc-cCCC-CccH------HHHHHHHhccCCCce
Q 026320 113 DRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHAD-SLRA------DIIAKVIGRLGLEKT 184 (240)
Q Consensus 113 ~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~-d~~g-~~r~------d~v~~i~~~~~~~~l 184 (240)
..|+. ......+.+.+.++..-+.||..|.+-+-..+ .... .... ..+.++++..|+ +|
T Consensus 83 ~~d~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l 149 (284)
T PRK13210 83 SRDPA------------TRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQV-ML 149 (284)
T ss_pred CCCHH------------HHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCC-EE
Confidence 11110 01112445556666666889999998432211 1111 1112 122333444554 57
Q ss_pred EEec------CCchhHHHHHHHhC-CCcccccCCCCch
Q 026320 185 MFEA------TNPRTSEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 185 ifEA------P~k~qQ~~~I~~fG-~~VNLgI~~~dVl 215 (240)
.+|. +...+-..+++..+ |+|.+..|+.++.
T Consensus 150 ~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~~ 187 (284)
T PRK13210 150 AVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVGNLS 187 (284)
T ss_pred EEEecCccccCCHHHHHHHHHHcCCCceeEEecCChhh
Confidence 7776 34456778899988 4455446666543
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0069 Score=56.64 Aligned_cols=124 Identities=16% Similarity=0.306 Sum_probs=90.6
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
-|+.+-||+||..+.|++.+++-++.++++ +.++ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--+.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 478899999999999999999999999988 2333 244444455443 78999999999999988766652
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.|+.+++.||..++ +-...+. |. +|.+.+.+.++..++.|+++
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~~v~-iDli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~~ 181 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFENIS-IDLIYDT----------------PL-------DNKKLLKEELKLAKELPINH 181 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCEEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 3456667889999999986321 1111111 11 25788899999999999998
Q ss_pred EEEe
Q 026320 153 IMID 156 (240)
Q Consensus 153 ViiE 156 (240)
|-+-
T Consensus 182 is~y 185 (350)
T PRK08446 182 LSAY 185 (350)
T ss_pred EEec
Confidence 8653
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0053 Score=57.92 Aligned_cols=121 Identities=17% Similarity=0.373 Sum_probs=88.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
..|+-+-||+||..+.|.+.|++.++.++++.. .|+.+.-+|+.+ ++.++.+++.||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 357889999999999999999999999987621 133333456565 78999999999999988766552
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 78 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-+.++-.+.|+.+++.||. +.-. ...+. |. +|.+.+.+.++..++.+.
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~D--li~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~ 184 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSID--LIYGL----------------PT-------QSLSDFIVDLHQAITLPI 184 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEEE--eecCC----------------CC-------CCHHHHHHHHHHHHccCC
Confidence 2445666788899999886 2222 22211 11 257899999999999999
Q ss_pred cEEEE
Q 026320 151 DMIMI 155 (240)
Q Consensus 151 ~~Vii 155 (240)
++|-+
T Consensus 185 ~~is~ 189 (370)
T PRK06294 185 THISL 189 (370)
T ss_pred CeEEE
Confidence 87754
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0044 Score=54.40 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHH--hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~--qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
+.+.+-++.++++|+.+.... |.+.. .+++.+.++++.+.++|.+.|-+.|-+-.+.+++..++|+.+++.-=.
T Consensus 115 ~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~-- 190 (265)
T cd03174 115 ENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPD-- 190 (265)
T ss_pred HHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC--
Confidence 368889999999999776531 12222 455689999999999999999999999999999999999999985211
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
..++... . .|...-+..+...++|||++ |++- |+=+..||..++.+-..+
T Consensus 191 ~~~~~H~-H-------------------------n~~gla~an~laA~~aG~~~--id~s~~G~G~~~Gn~~~e~~~~~l 242 (265)
T cd03174 191 VPLGLHT-H-------------------------NTLGLAVANSLAALEAGADR--VDGSVNGLGERAGNAATEDLVAAL 242 (265)
T ss_pred CeEEEEe-C-------------------------CCCChHHHHHHHHHHcCCCE--EEeccccccccccCccHHHHHHHH
Confidence 2344422 1 12344477788889999977 4886 888999999999888777
Q ss_pred hccC
Q 026320 177 GRLG 180 (240)
Q Consensus 177 ~~~~ 180 (240)
+..+
T Consensus 243 ~~~~ 246 (265)
T cd03174 243 EGLG 246 (265)
T ss_pred HhcC
Confidence 7655
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0079 Score=52.51 Aligned_cols=127 Identities=27% Similarity=0.285 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+.+++-++.++++|..++.+. |.+-...++.+.++.+.+.++|.+.|-|.|-.-.+++++-.++|+.++++--. .+
T Consensus 108 ~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~--~~ 183 (237)
T PF00682_consen 108 ERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD--IP 183 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT--SE
T ss_pred HHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC--Ce
Confidence 467888999999999887652 22223344578889999999999999999999999999999999999986332 34
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
++... .. |...-+..+...++|||++| ++- |+=+..||...+.+-..+..
T Consensus 184 l~~H~-Hn-------------------------d~Gla~An~laA~~aGa~~i--d~t~~GlG~~~Gn~~le~lv~~L~~ 235 (237)
T PF00682_consen 184 LGFHA-HN-------------------------DLGLAVANALAALEAGADRI--DGTLGGLGERAGNAPLEELVAALER 235 (237)
T ss_dssp EEEEE-BB-------------------------TTS-HHHHHHHHHHTT-SEE--EEBGGGGSSTTSB-BHHHHHHHHHH
T ss_pred EEEEe-cC-------------------------CccchhHHHHHHHHcCCCEE--EccCccCCCCCCCccHHHHHHHHhh
Confidence 55533 11 22334677888899999994 665 88899999998887766654
Q ss_pred c
Q 026320 179 L 179 (240)
Q Consensus 179 ~ 179 (240)
.
T Consensus 236 ~ 236 (237)
T PF00682_consen 236 M 236 (237)
T ss_dssp T
T ss_pred c
Confidence 4
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.018 Score=54.15 Aligned_cols=143 Identities=16% Similarity=0.147 Sum_probs=106.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
-+|.+.++.. ....+.+++-++.+|++|..++.. ++.+....++.+.++.+.+.++|.+.|-|.|-.-.+.+++-
T Consensus 101 gvd~iri~~~---~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 101 GVRVVRVATH---CTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred CCCEEEEEEe---cchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHH
Confidence 4677777653 444568999999999999877653 22333445557788888889999999999999999999999
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC 161 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~ 161 (240)
.++++.++++ +.....+|.... .|...-+-.....++|||+ +|++. |+=
T Consensus 176 ~~~v~~l~~~-l~~~i~ig~H~H--------------------------nnlGla~ANslaAi~aGa~--~iD~Sl~GlG 226 (337)
T PRK08195 176 RDRVRALRAA-LKPDTQVGFHGH--------------------------NNLGLGVANSLAAVEAGAT--RIDGSLAGLG 226 (337)
T ss_pred HHHHHHHHHh-cCCCCeEEEEeC--------------------------CCcchHHHHHHHHHHhCCC--EEEecChhhc
Confidence 9999999874 212233454321 1234457777888999999 57885 888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
...||..++.+-..+++.|
T Consensus 227 ~~aGN~~tE~lv~~L~~~g 245 (337)
T PRK08195 227 AGAGNTPLEVLVAVLDRMG 245 (337)
T ss_pred ccccCccHHHHHHHHHhcC
Confidence 8999999998777776655
|
|
| >TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.034 Score=49.57 Aligned_cols=156 Identities=17% Similarity=0.265 Sum_probs=90.7
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCcc
Q 026320 43 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDR 114 (240)
Q Consensus 43 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~ 114 (240)
|+.++.++ -.+.+-++.++++||++||++-+. .+++.+++..+-+.+++.|+++.+ +..-.. ....+ ..
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~-~~ 84 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIPS-MCLSAHRRFPLG-SK 84 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCcee-eecCCCccCcCC-Cc
Confidence 34455532 368888999999999999997443 355788888899999999998753 221000 00011 11
Q ss_pred ccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc-cCC-CCccHH------HHHHHHhccCCCceEE
Q 026320 115 DRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC-KHA-DSLRAD------IIAKVIGRLGLEKTMF 186 (240)
Q Consensus 115 d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~-d~~-g~~r~d------~v~~i~~~~~~~~lif 186 (240)
|+. ......+.+-+.++..-+.||..|.+-+.... ... ...... .+.++++..|+ +|.+
T Consensus 85 ~~~------------~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv-~l~l 151 (279)
T TIGR00542 85 DKA------------VRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQV-TLAV 151 (279)
T ss_pred CHH------------HHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCC-EEEE
Confidence 110 01122455666777777899999998765432 111 111111 22334445555 5788
Q ss_pred ec---C---CchhHHHHHHHhC-CCcccccCCCCc
Q 026320 187 EA---T---NPRTSEWFIRRYG-PKVNLFVDHSQV 214 (240)
Q Consensus 187 EA---P---~k~qQ~~~I~~fG-~~VNLgI~~~dV 214 (240)
|. | ...+-..+++..| |+|.+..|+.++
T Consensus 152 E~~~~~~~~t~~~~~~li~~v~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 152 EIMDTPFMSSISKWLKWDHYLNSPWFTLYPDIGNL 186 (279)
T ss_pred eeCCCchhcCHHHHHHHHHHcCCCceEEEeCcChh
Confidence 85 2 3345567888888 555554666554
|
This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.017 Score=51.73 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=104.5
Q ss_pred cccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 4 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
.+|.+.+...+|-.+.+ +.+++-++.++++|..++.+- |.+-...++.+.++.+.+.+.|.+.|-+.
T Consensus 82 g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~i~l~ 159 (259)
T cd07939 82 GVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQEAGADRLRFA 159 (259)
T ss_pred CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHHCCCCEEEeC
Confidence 46777777666655432 356788999999999887543 22323445578888888899999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
|-+-.+.+++-.++++.+++. +. ..++..+ .. |...-.-.+-..+++||++
T Consensus 160 DT~G~~~P~~v~~lv~~l~~~-~~--~~l~~H~-Hn-------------------------~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 160 DTVGILDPFTTYELIRRLRAA-TD--LPLEFHA-HN-------------------------DLGLATANTLAAVRAGATH 210 (259)
T ss_pred CCCCCCCHHHHHHHHHHHHHh-cC--CeEEEEe-cC-------------------------CCChHHHHHHHHHHhCCCE
Confidence 999999999999999999874 22 2355533 11 2233466777789999986
Q ss_pred EEEecc--ccccCCCCccHHHHHHHHhcc
Q 026320 153 IMIDSD--DVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 153 ViiEar--gi~d~~g~~r~d~v~~i~~~~ 179 (240)
|++. |+=+..||.-++.+-..+...
T Consensus 211 --vd~s~~G~G~~aGN~~tE~lv~~l~~~ 237 (259)
T cd07939 211 --VSVTVNGLGERAGNAALEEVVMALKHL 237 (259)
T ss_pred --EEEecccccccccCcCHHHHHHHHHHh
Confidence 5886 777899999988877666544
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.012 Score=55.17 Aligned_cols=124 Identities=20% Similarity=0.270 Sum_probs=89.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 76 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 76 (240)
..|+-+-||+||..++|.+.|++-++.++++ ++.. . .|+.+.-+|+.+ ++.++.++++||+.|.+.--+.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 3488999999999999999999999999874 4422 1 133332334443 5799999999999999876665
Q ss_pred ------cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC
Q 026320 77 ------EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 149 (240)
Q Consensus 77 ------~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG 149 (240)
..+.++-.+.++.+++.|+. +...+=. +. |. +|.+++.+.++..++.|
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~--Gl----------------Pg-------qt~~~~~~tl~~~~~l~ 188 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIY--GT----------------PG-------ESDDDWRASLDAALEAG 188 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEec--cC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 24566677889999999987 4333222 11 11 25788999999999999
Q ss_pred CcEEEE
Q 026320 150 ADMIMI 155 (240)
Q Consensus 150 A~~Vii 155 (240)
.+.|-+
T Consensus 189 ~~~i~~ 194 (375)
T PRK05628 189 VDHVSA 194 (375)
T ss_pred CCEEEe
Confidence 998843
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.037 Score=52.02 Aligned_cols=143 Identities=16% Similarity=0.170 Sum_probs=104.8
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
-||.+-++.. ....+.+++-++.+|+.|..++.. ++.+....|+.+-++.+.+.+.|.++|-|.|-.-.+.+++-
T Consensus 100 gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 100 GARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred CCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHH
Confidence 3677776653 344567899999999999876642 22333455567888888899999999999999999999999
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC 161 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~ 161 (240)
.++++.++++ +.+-.++|.... .|...-+-.....++|||++ |++. |+=
T Consensus 175 ~~~v~~l~~~-l~~~i~ig~H~H--------------------------nnlGla~ANslaAi~aGa~~--iD~Sl~G~G 225 (333)
T TIGR03217 175 RDRVRALKAV-LKPETQVGFHAH--------------------------HNLSLAVANSIAAIEAGATR--IDASLRGLG 225 (333)
T ss_pred HHHHHHHHHh-CCCCceEEEEeC--------------------------CCCchHHHHHHHHHHhCCCE--EEeeccccc
Confidence 9999999873 221123555321 12344467777889999998 6775 888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
...||..++.+-..++..|
T Consensus 226 ~~aGN~~~E~lv~~l~~~g 244 (333)
T TIGR03217 226 AGAGNAPLEVFVAVLDRLG 244 (333)
T ss_pred ccccCccHHHHHHHHHhcC
Confidence 8999999998877776655
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.021 Score=54.03 Aligned_cols=124 Identities=15% Similarity=0.235 Sum_probs=89.2
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
-|+-+=||+||..+.+++.|.+-++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 58 ~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~ 134 (378)
T PRK05660 58 EVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLK 134 (378)
T ss_pred ceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHH
Confidence 3678889999999999999999999998751 11112 24444334333 347889999999999998866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.|+.+++.||..++ +....+. |. ++.+.+.+.++..++.|.++
T Consensus 135 ~l~r~~~~~~~~~ai~~~~~~G~~~v~-~dli~Gl----------------pg-------qt~~~~~~~l~~~~~l~p~~ 190 (378)
T PRK05660 135 RLGRIHGPDEAKRAAKLAQGLGLRSFN-LDLMHGL----------------PD-------QSLEEALDDLRQAIALNPPH 190 (378)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCe
Confidence 3566777889999999997432 2332221 11 25789999999999999998
Q ss_pred EE
Q 026320 153 IM 154 (240)
Q Consensus 153 Vi 154 (240)
|-
T Consensus 191 is 192 (378)
T PRK05660 191 LS 192 (378)
T ss_pred EE
Confidence 84
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.084 Score=46.28 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=87.5
Q ss_pred ccEEEecCcccc----ccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 026320 5 VDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 78 (240)
Q Consensus 5 ID~lKfg~GTs~----l~p~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l 78 (240)
||.+=+|+|.+. +++ ...+.++.+++.+ +.+. ++..+ . .+.++.+++.|++.|-|+...-+.
T Consensus 33 V~~IEvg~~~~~~~~p~~~--~~~~~i~~l~~~~~~~~~~-------~l~~~--~-~~~i~~a~~~g~~~i~i~~~~s~~ 100 (265)
T cd03174 33 VDSIEVGSGASPKAVPQME--DDWEVLRAIRKLVPNVKLQ-------ALVRN--R-EKGIERALEAGVDEVRIFDSASET 100 (265)
T ss_pred CCEEEeccCcCccccccCC--CHHHHHHHHHhccCCcEEE-------EEccC--c-hhhHHHHHhCCcCEEEEEEecCHH
Confidence 566667776665 333 2344444454444 3332 11111 1 678899999999999999876631
Q ss_pred ------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHH
Q 026320 79 ------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 146 (240)
Q Consensus 79 ------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL 146 (240)
..+.-.+.|+.+++.|+.+.. ...... . |..+++++.+.++...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~--~~~~~~-----~-----------------~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 101 HSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG--SLEDAF-----G-----------------CKTDPEYVLEVAKALE 156 (265)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--EEEeec-----C-----------------CCCCHHHHHHHHHHHH
Confidence 345566889999999986433 331100 0 0125889999999999
Q ss_pred HcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 147 EAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 147 eAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
++||+.|. ++|..|...++.+.++++
T Consensus 157 ~~g~~~i~-----l~Dt~G~~~P~~v~~li~ 182 (265)
T cd03174 157 EAGADEIS-----LKDTVGLATPEEVAELVK 182 (265)
T ss_pred HcCCCEEE-----echhcCCcCHHHHHHHHH
Confidence 99999887 678888888888888875
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.027 Score=54.49 Aligned_cols=127 Identities=17% Similarity=0.354 Sum_probs=89.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
-|+-+-||+||..+++++.+.+-++.++++ .....+ .|+.+.-+|.. -++.++.+++.||+.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 366788999999999999999999999986 111111 22222223323 368999999999999999855553
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.++.+++.|++.. -+....+. |. ++.+.+.+.++..++.|++.
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFTSI-NIDLIYGL----------------PK-------QTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcE-EEeEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 355666789999999998621 12222221 11 25788899999999999999
Q ss_pred EEEec
Q 026320 153 IMIDS 157 (240)
Q Consensus 153 ViiEa 157 (240)
|-+-.
T Consensus 235 is~y~ 239 (455)
T TIGR00538 235 LAVFN 239 (455)
T ss_pred EEEec
Confidence 86653
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.069 Score=47.94 Aligned_cols=142 Identities=16% Similarity=0.158 Sum_probs=102.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
-+|.+-+..-.+ +.+.+++-++.+|++|..+...- +.+....++.+.++.+.+.+.|.+.|-+.|-+-.+.+++-
T Consensus 98 g~~~iri~~~~s---~~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v 172 (263)
T cd07943 98 GVDVVRVATHCT---EADVSEQHIGAARKLGMDVVGFL--MMSHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDV 172 (263)
T ss_pred CCCEEEEEechh---hHHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHH
Confidence 356666654443 23478999999999998776421 2223344557888889999999999999999999999999
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC 161 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~ 161 (240)
.++++.++++= .+ ..++..+ . .|...-+-.+...++|||++ |++. |+=
T Consensus 173 ~~lv~~l~~~~-~~-~~l~~H~-H-------------------------n~~GlA~AN~laAi~aGa~~--vd~s~~GlG 222 (263)
T cd07943 173 RERVRALREAL-DP-TPVGFHG-H-------------------------NNLGLAVANSLAAVEAGATR--IDGSLAGLG 222 (263)
T ss_pred HHHHHHHHHhC-CC-ceEEEEe-c-------------------------CCcchHHHHHHHHHHhCCCE--EEeeccccc
Confidence 99999998841 11 1344432 1 13345577778889999996 6775 888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
+..||..++.+-..++..|
T Consensus 223 ~~aGN~~~E~lv~~L~~~g 241 (263)
T cd07943 223 AGAGNTPLEVLVAVLERMG 241 (263)
T ss_pred CCcCCccHHHHHHHHHhcC
Confidence 8899999988776666544
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.055 Score=49.19 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=100.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~--G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
+|.+-+...++- -+.+++-++.++++|..+.. . ++. -...++.+.++.+.+.+.|.+.|-+.|-.-.+.++
T Consensus 105 ~~~iri~~~~~~---~~~~~~~i~~ak~~G~~v~~~i~~~~~---~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~ 178 (275)
T cd07937 105 IDIFRIFDALND---VRNLEVAIKAVKKAGKHVEGAICYTGS---PVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPY 178 (275)
T ss_pred CCEEEEeecCCh---HHHHHHHHHHHHHCCCeEEEEEEecCC---CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 566666555544 35789999999999986653 1 111 12234577888889999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.++++ +. ..+++.+ .. |...-.......++|||++|=.=--|+=
T Consensus 179 ~v~~lv~~l~~~-~~--~~l~~H~-Hn-------------------------d~GlA~aN~laA~~aGa~~vd~sv~GlG 229 (275)
T cd07937 179 AAYELVKALKKE-VG--LPIHLHT-HD-------------------------TSGLAVATYLAAAEAGVDIVDTAISPLS 229 (275)
T ss_pred HHHHHHHHHHHh-CC--CeEEEEe-cC-------------------------CCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 999999999884 11 2344432 11 2234467777789999997544445888
Q ss_pred cCCCCccHHHHHHHHhccC
Q 026320 162 KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~ 180 (240)
+..||...+.+-..+...|
T Consensus 230 ~~aGN~~~E~l~~~L~~~g 248 (275)
T cd07937 230 GGTSQPSTESMVAALRGTG 248 (275)
T ss_pred CCcCChhHHHHHHHHHccC
Confidence 8899999888877776554
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.028 Score=53.60 Aligned_cols=124 Identities=16% Similarity=0.287 Sum_probs=88.9
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 76 (240)
-|+-+=||+||..++|++.|++-++.++++ ..+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~ 142 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLA 142 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHH
Confidence 477889999999999999999999999876 222222 233333344443 5889999999999998865554
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
..+.++-.+.++.+++.||.... +....+. |. +|.+.+.+.++..++.+.+.
T Consensus 143 ~l~R~~~~~~~~~ai~~l~~~G~~~v~-~dlI~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~~ 198 (400)
T PRK07379 143 LCGRSHRVKDIFAAVDLIHQAGIENFS-LDLISGL----------------PH-------QTLEDWQASLEAAIALNPTH 198 (400)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHcCCCCE
Confidence 45667778899999999987321 2222221 11 25788899999999999998
Q ss_pred EE
Q 026320 153 IM 154 (240)
Q Consensus 153 Vi 154 (240)
|-
T Consensus 199 is 200 (400)
T PRK07379 199 LS 200 (400)
T ss_pred EE
Confidence 83
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.06 Score=51.18 Aligned_cols=140 Identities=19% Similarity=0.225 Sum_probs=103.4
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+|.+-+...+|-++-+ +.+++-++.++++|..++.+ +|.+-..+++.+.++++.+.+.|.+.|-+.|
T Consensus 89 ~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~D 166 (378)
T PRK11858 89 VDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAAEEAGADRVRFCD 166 (378)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHHHhCCCCEEEEec
Confidence 4556666666555322 45678889999999988765 4555555667889999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-.-.+.+.+-.++|+.+++.= .+ .+++.+ .. |...-.-.....++|||++|
T Consensus 167 T~G~~~P~~v~~lv~~l~~~~-~~--~l~~H~-Hn-------------------------d~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 167 TVGILDPFTMYELVKELVEAV-DI--PIEVHC-HN-------------------------DFGMATANALAGIEAGAKQV 217 (378)
T ss_pred cCCCCCHHHHHHHHHHHHHhc-CC--eEEEEe-cC-------------------------CcCHHHHHHHHHHHcCCCEE
Confidence 999999999999999998752 22 344433 11 23344667777899999975
Q ss_pred EEecc--ccccCCCCccHHHHHHHHh
Q 026320 154 MIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 154 iiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
++- |+=+..||...+.+-..+.
T Consensus 218 --d~tv~GlGeraGNa~lE~vv~~L~ 241 (378)
T PRK11858 218 --HTTVNGLGERAGNAALEEVVMALK 241 (378)
T ss_pred --EEeeccccccccCccHHHHHHHHH
Confidence 664 8888999998887665554
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.043 Score=53.10 Aligned_cols=126 Identities=18% Similarity=0.334 Sum_probs=89.1
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
|+.+=||+||..++|.+.|.+-++.++++- .+.++ .|+.+.-+|+. -++.++.+++.||+.|.|+--+.+
T Consensus 103 v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~ 179 (453)
T PRK09249 103 VSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKA 179 (453)
T ss_pred eEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHH
Confidence 678889999999999999999999998861 11122 12222223333 368999999999999999866653
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||+.. -+....+. | -++.+++.+.++..++.|++.|
T Consensus 180 l~r~~~~~~~~~ai~~l~~~G~~~v-~~dli~Gl----------------P-------gqt~e~~~~~l~~~~~l~~~~i 235 (453)
T PRK09249 180 VNRIQPFEFTFALVEAARELGFTSI-NIDLIYGL----------------P-------KQTPESFARTLEKVLELRPDRL 235 (453)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCcE-EEEEEccC----------------C-------CCCHHHHHHHHHHHHhcCCCEE
Confidence 566777889999999998421 12222221 1 0257888899999999999988
Q ss_pred EEec
Q 026320 154 MIDS 157 (240)
Q Consensus 154 iiEa 157 (240)
-+=.
T Consensus 236 ~~y~ 239 (453)
T PRK09249 236 AVFN 239 (453)
T ss_pred EEcc
Confidence 7654
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.047 Score=51.47 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=90.3
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 76 (240)
.++-+=||+||..+.|.+.|++-++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--+.
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~ 130 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILK 130 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 356677999999999999999999999997 2 223 244554556553 7899999999999998875555
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.-+.++-.+.|+.++++||. +-..+ ..+. |. ++.+++.+.++...+.+.+
T Consensus 131 ~l~R~~~~~~~~~ai~~lr~~G~~~v~~dl--I~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~ 185 (353)
T PRK05904 131 QLNRTHTIQDSKEAINLLHKNGIYNISCDF--LYCL----------------PI-------LKLKDLDEVFNFILKHKIN 185 (353)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEEEEE--eecC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 34556777899999999986 22222 2211 11 2468888888888999999
Q ss_pred EEEEec
Q 026320 152 MIMIDS 157 (240)
Q Consensus 152 ~ViiEa 157 (240)
+|-+=.
T Consensus 186 ~is~y~ 191 (353)
T PRK05904 186 HISFYS 191 (353)
T ss_pred EEEEEe
Confidence 886654
|
|
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.049 Score=52.74 Aligned_cols=125 Identities=20% Similarity=0.398 Sum_probs=89.6
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
|+-+=||+||..++|++.|++.++.++++ ++ .++ .|+.+.-+|.. -++.++.++++||+.|.|+--+.+
T Consensus 104 v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~ 179 (453)
T PRK13347 104 VSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQK 179 (453)
T ss_pred EEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 55677999999999999999999999885 22 111 13322223333 378999999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 78 -----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 78 -----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
-+.++-.+.|+.+++.||..+. +....+. |. ++.+.+.+.++..++.|.+.
T Consensus 180 ~l~R~~~~~~~~~ai~~lr~~G~~~v~-~dli~Gl----------------Pg-------qt~e~~~~tl~~~~~l~p~~ 235 (453)
T PRK13347 180 AINRIQPEEMVARAVELLRAAGFESIN-FDLIYGL----------------PH-------QTVESFRETLDKVIALSPDR 235 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCCcEE-EeEEEeC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 5667778899999999986211 1122211 11 25788999999999999999
Q ss_pred EEEec
Q 026320 153 IMIDS 157 (240)
Q Consensus 153 ViiEa 157 (240)
|-+-+
T Consensus 236 i~~y~ 240 (453)
T PRK13347 236 IAVFG 240 (453)
T ss_pred EEEec
Confidence 97754
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.21 Score=44.73 Aligned_cols=147 Identities=17% Similarity=0.154 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.- ...+.+-.+ ++
T Consensus 18 ~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~g---v~----------------- 74 (281)
T cd00408 18 DALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAG---VG----------------- 74 (281)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEe---cC-----------------
Confidence 378899999999999999665433 4899999999999998841 111111110 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~~~~ 179 (240)
..+..+.+++++..-++||+.|++=.- -+|+.- -.+..+++.++.+ .
T Consensus 75 ---~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~-~ 150 (281)
T cd00408 75 ---ANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE-H 150 (281)
T ss_pred ---CccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc-C
Confidence 114678899999999999999999763 135443 2456777777764 3
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 180 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+ +-=+=...++..+...+++..++++.++... |-.-++.|..|--|
T Consensus 151 ~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~-d~~~~~~l~~G~~G 197 (281)
T cd00408 151 PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGD-DDLLLPALALGADG 197 (281)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcc-hHHHHHHHHcCCCE
Confidence 3 2222244567777777888887777776444 55666777766434
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.15 Score=45.93 Aligned_cols=145 Identities=14% Similarity=0.175 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +...+-+-.+ + .
T Consensus 21 ~~~~~~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~---~~~~~~vi~g---v--~-------------- 77 (284)
T cd00950 21 DALERLIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEA---VNGRVPVIAG---T--G-------------- 77 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHH---hCCCCcEEec---c--C--------------
Confidence 368899999999999999887 776 99999999999999884 1111111110 1 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC---C-CccHHHHHHHHhc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA---D-SLRADIIAKVIGR 178 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~---g-~~r~d~v~~i~~~ 178 (240)
..+..+.+++++..-++||+.|++=.- -+|+.- | .+..+++.++++
T Consensus 78 ----~~~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~- 152 (284)
T cd00950 78 ----SNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE- 152 (284)
T ss_pred ----CccHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc-
Confidence 114688899999999999999999763 135432 2 455667777764
Q ss_pred cCCCceEE-ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 179 LGLEKTMF-EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 179 ~~~~~lif-EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.| .-+-+ ++ ++...-..+++++++++.++...++ .-+..++.|--|
T Consensus 153 ~p-~v~giK~s~~~~~~~~~~~~~~~~~~~v~~G~d~-~~~~~~~~G~~G 200 (284)
T cd00950 153 HP-NIVGIKEATGDLDRVSELIALCPDDFAVLSGDDA-LTLPFLALGGVG 200 (284)
T ss_pred CC-CEEEEEECCCCHHHHHHHHHhCCCCeEEEeCChH-hHHHHHHCCCCE
Confidence 32 11111 22 3444445566777777766544443 345666655433
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=49.50 Aligned_cols=128 Identities=17% Similarity=0.157 Sum_probs=91.9
Q ss_pred HHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 23 IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++-+++++++|..+. .|..++. .-+++.+.++.+.+.+.|.+.|-|.|-+--+.+.+-.++++.+++. +.
T Consensus 164 ~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~--r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~-~~ 240 (347)
T PLN02746 164 YREVALAAKKHSIPVRGYVSCVVGCPIEG--PVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV-VP 240 (347)
T ss_pred HHHHHHHHHHcCCeEEEEEEeeecCCccC--CCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh-CC
Confidence 4489999999999773 2333332 2345688899999999999999999999999999999999999874 22
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccHH
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRAD 170 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d 170 (240)
..+++..+. . |....+-.+-..++|||++|=.=--|+=. ..||.-++
T Consensus 241 -~~~i~~H~H-n-------------------------d~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE 293 (347)
T PLN02746 241 -VDKLAVHFH-D-------------------------TYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATE 293 (347)
T ss_pred -CCeEEEEEC-C-------------------------CCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHH
Confidence 223565431 1 23444777888899999975333347654 68998877
Q ss_pred HHHHHHhccC
Q 026320 171 IIAKVIGRLG 180 (240)
Q Consensus 171 ~v~~i~~~~~ 180 (240)
.+-..++.+|
T Consensus 294 ~lv~~L~~~G 303 (347)
T PLN02746 294 DVVYMLNGLG 303 (347)
T ss_pred HHHHHHHhcC
Confidence 7666665444
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.072 Score=50.33 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=103.8
Q ss_pred ccEEEecCccccccCh-----------hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~-----------~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+|.+-+...+|-++-+ +.+++-++.++++|..++.+ +|.+-...++.+.++.+.+.+.|.+.|-+.|
T Consensus 86 ~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~D 163 (365)
T TIGR02660 86 VDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRFRFAD 163 (365)
T ss_pred cCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEEEEcc
Confidence 4556666555543222 23558899999999988765 4555555667888999999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-.--+.+.+-.++|+.+++. +.+ .+++.+ .. |...-+-.+...++|||++|
T Consensus 164 T~G~~~P~~v~~lv~~l~~~-~~v--~l~~H~-HN-------------------------d~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 164 TVGILDPFSTYELVRALRQA-VDL--PLEMHA-HN-------------------------DLGMATANTLAAVRAGATHV 214 (365)
T ss_pred cCCCCCHHHHHHHHHHHHHh-cCC--eEEEEe-cC-------------------------CCChHHHHHHHHHHhCCCEE
Confidence 99999999999999999874 122 244432 11 23344677778899999964
Q ss_pred EEecc--ccccCCCCccHHHHHHHH-hccCC
Q 026320 154 MIDSD--DVCKHADSLRADIIAKVI-GRLGL 181 (240)
Q Consensus 154 iiEar--gi~d~~g~~r~d~v~~i~-~~~~~ 181 (240)
++- |+=+..||...+.+-..+ ...|.
T Consensus 215 --d~tl~GiGeraGN~~lE~lv~~L~~~~g~ 243 (365)
T TIGR02660 215 --NTTVNGLGERAGNAALEEVAMALKRLLGR 243 (365)
T ss_pred --EEEeeccccccccCCHHHHHHHHHHhcCC
Confidence 765 888899998888776665 44443
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.17 Score=46.61 Aligned_cols=151 Identities=17% Similarity=0.244 Sum_probs=97.9
Q ss_pred EEecCccccccChhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 76 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 76 (240)
+=||.||....|.+.|++.++.++++. +.++-+|=-+.. +...-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 458999999999999999999998753 122222211110 1133456666667799 4688743332
Q ss_pred --cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 77 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 77 --~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
..+.++..+.+++++++|+++...+=+ +. |. ++.+++++.++...+.+.+.|-
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~--Gl----------------Pg-------et~e~~~~t~~~l~~l~~d~i~ 211 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVIL--GL----------------PG-------EDREEMMETAKIVSLLDVDGIK 211 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEE--CC----------------CC-------CCHHHHHHHHHHHHhcCCCEEE
Confidence 235678889999999999987664433 21 10 1468889999999999999776
Q ss_pred E------ecccccc--CCCCcc-------HHHHHHHHhccCCCceEEe
Q 026320 155 I------DSDDVCK--HADSLR-------ADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 155 i------Eargi~d--~~g~~r-------~d~v~~i~~~~~~~~lifE 187 (240)
+ ++-.+++ ..|.+. -+.+..+++.++++.+|+-
T Consensus 212 i~~l~~~pgT~L~~~~~~g~~~~~~~~e~~~~~~~~l~~l~~~~~i~R 259 (302)
T TIGR01212 212 IHPLHVVKGTKMAKMYEKGELKTLSLEEYISLACDFLEHLPPEVVIHR 259 (302)
T ss_pred EEEEEecCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCcCeEEEE
Confidence 4 3222222 234443 3455667788998888776
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.2 Score=45.49 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
.++.++.+.+.|.+.|-|+...-++ +.-...|+.+++.|++|.. .+....+ + ..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~--~i~~~~~-------~---------------~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG--AICYTGS-------P---------------VH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE--EEEecCC-------C---------------CC
Confidence 7889999999999999998766654 4456799999999987653 4421110 0 01
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
|++.+.+.++.-.++||+.|- +.|..|...+..+.++++.+
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (275)
T cd07937 147 TLEYYVKLAKELEDMGADSIC-----IKDMAGLLTPYAAYELVKAL 187 (275)
T ss_pred CHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 578999999999999999874 68999999999888888654
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.097 Score=48.13 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 22 FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
.+++-|+.+|++|..+. .|..++.. -.++.+.++.+.+.++|.+.|-+.|-.--+.+.+-.++++.+++. +
T Consensus 121 ~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~ 197 (287)
T PRK05692 121 RFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAE-F 197 (287)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHh-C
Confidence 47789999999999774 23333332 334578888999999999999999999999999999999999974 2
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRA 169 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~ 169 (240)
.. ..+++.+ .. |...-+..+-..++|||++|=.=--|+=. ..||.-.
T Consensus 198 ~~-~~i~~H~-Hn-------------------------~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~ 250 (287)
T PRK05692 198 PA-ERLAGHF-HD-------------------------TYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVAT 250 (287)
T ss_pred CC-CeEEEEe-cC-------------------------CCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCccccccH
Confidence 11 1345533 11 22334677778899999974332236654 6799888
Q ss_pred HHHHHHHhccC
Q 026320 170 DIIAKVIGRLG 180 (240)
Q Consensus 170 d~v~~i~~~~~ 180 (240)
+.+-..++..|
T Consensus 251 E~lv~~L~~~g 261 (287)
T PRK05692 251 EDVLYMLHGLG 261 (287)
T ss_pred HHHHHHHHhcC
Confidence 87766665444
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.24 Score=44.87 Aligned_cols=143 Identities=15% Similarity=0.164 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+.|.+.|=+. ||. .|+.++|.++++.+.+. +..-+.+-. -++
T Consensus 23 ~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~---~~~~~~vi~---gv~----------------- 78 (292)
T PRK03170 23 ALRKLVDYLIANGTDGLVVV-GTTGESPTLTHEEHEELIRAVVEA---VNGRVPVIA---GTG----------------- 78 (292)
T ss_pred HHHHHHHHHHHcCCCEEEEC-CcCCccccCCHHHHHHHHHHHHHH---hCCCCcEEe---ecC-----------------
Confidence 68889999999999999884 665 99999999999999884 111111110 010
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC---C-CccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA---D-SLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~---g-~~r~d~v~~i~~~~ 179 (240)
..+.++.++++++.-++||+.|++=.- -+|+.- | .+..+++.++. +.
T Consensus 79 ---~~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~-~~ 154 (292)
T PRK03170 79 ---SNSTAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA-EH 154 (292)
T ss_pred ---CchHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH-cC
Confidence 114688899999999999999999652 124321 2 34566666663 33
Q ss_pred CCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 180 GLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~~~~lif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
| +++. + .++..+-..++++++++..++...++. -+.+++.|.-|
T Consensus 155 p--~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~-~~~~l~~G~~G 201 (292)
T PRK03170 155 P--NIVGIKEATGDLERVSELIELVPDDFAVYSGDDAL-ALPFLALGGVG 201 (292)
T ss_pred C--CEEEEEECCCCHHHHHHHHHhCCCCeEEEECChHh-HHHHHHcCCCE
Confidence 2 2221 2 334455555666666655555444433 35666665544
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.059 Score=48.86 Aligned_cols=141 Identities=15% Similarity=0.193 Sum_probs=104.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
.-||.+.+++..+.+ +.+++-++.++++|..++.+ +|.+....++.+.++++.+.+.|.+.|-+.|-+-.+.+++
T Consensus 94 ~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~ 168 (266)
T cd07944 94 SVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPED 168 (266)
T ss_pred CCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHH
Confidence 357888888766643 46899999999999987753 1112224556888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--cc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DV 160 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi 160 (240)
-.++++.++++ +..-..++... -.|...-+......++|||++ |++- |+
T Consensus 169 v~~lv~~l~~~-~~~~~~i~~H~--------------------------Hn~~Gla~AN~laA~~aGa~~--vd~s~~G~ 219 (266)
T cd07944 169 IKRIISLLRSN-LDKDIKLGFHA--------------------------HNNLQLALANTLEAIELGVEI--IDATVYGM 219 (266)
T ss_pred HHHHHHHHHHh-cCCCceEEEEe--------------------------CCCccHHHHHHHHHHHcCCCE--EEEecccC
Confidence 99999999873 11001233322 123455577888889999975 6665 88
Q ss_pred ccCCCCccHHHHHHHHh
Q 026320 161 CKHADSLRADIIAKVIG 177 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~ 177 (240)
=...||..++.+-..++
T Consensus 220 G~~aGN~~~E~~v~~l~ 236 (266)
T cd07944 220 GRGAGNLPTELLLDYLN 236 (266)
T ss_pred CCCcCcHHHHHHHHHHH
Confidence 88899999888766664
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=46.86 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhCCceecCC-c-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~G-t-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+++-++++|++|..++.+ . +++. ....++.+.++++.+.+.|.+.|-|.|-.-.+.+++-.++++.++++ +. -.
T Consensus 120 ~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~-~~ 196 (273)
T cd07941 120 MIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRER-LP-GV 196 (273)
T ss_pred HHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh-CC-CC
Confidence 4688999999999988774 2 3231 12234567788888899999999999999999999999999999884 11 01
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
.++..+ .. |...-...+...++|||++ +++. |+=+..||...+.+-..+.
T Consensus 197 ~l~~H~-Hn-------------------------d~Gla~An~laA~~aGa~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 197 PLGIHA-HN-------------------------DSGLAVANSLAAVEAGATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred eeEEEe-cC-------------------------CCCcHHHHHHHHHHcCCCE--EEEeccccccccccccHHHHHHHHH
Confidence 244432 11 2334467778889999996 5665 8889999988876665554
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.29 Score=44.63 Aligned_cols=143 Identities=18% Similarity=0.169 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.++++++++.+-|.+.|=+.-.| ..|+.++|.++++.+.+. | +.|+ +|+
T Consensus 22 ~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi--~gv----------------------- 76 (289)
T cd00951 22 AYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVL--AGA----------------------- 76 (289)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEE--Eec-----------------------
Confidence 67888999999999999765433 589999999999998884 1 1111 111
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccC
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLG 180 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~v~~i~~~~~ 180 (240)
+. +..+.++.+++.-++||+.|++=.- -+|+..| .+..+++.++.++.+
T Consensus 77 ----~~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~~~p 151 (289)
T cd00951 77 ----GY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCP 151 (289)
T ss_pred ----CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHhcCC
Confidence 01 3577899999999999999998541 2587766 577888888875344
Q ss_pred CCceEE--e-cCCchhHHHHHHHhCCCcccccCC--CCchhhhhhhCccCCC
Q 026320 181 LEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDH--SQVMDLECLRGRNLGK 227 (240)
Q Consensus 181 ~~~lif--E-AP~k~qQ~~~I~~fG~~VNLgI~~--~dVl~LE~LR~~~~G~ 227 (240)
+++. + .++-.+...+++.++.+..++.-+ .|.+.+++++.|--|-
T Consensus 152 --nivgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~l~~Ga~G~ 201 (289)
T cd00951 152 --NLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTY 201 (289)
T ss_pred --CEEEEEeCCCCHHHHHHHHHhcCCCeEEEeCCCcchHhHHHHHHCCCCEE
Confidence 3332 3 455566677788887766554333 5888888888775453
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.14 Score=46.10 Aligned_cols=146 Identities=18% Similarity=0.156 Sum_probs=103.3
Q ss_pred ccEEEecCcccccc-----------ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~l~-----------p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+|.+.+...+|-.. .-+.+.+-++.++++|..++.+. |.+-...++.+.++.+.+.++|.+.|-+.|
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~G~~~i~l~D 164 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEAAIEAGATTINIPD 164 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 67777766554332 11457788999999999887542 222233445778888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+-.+.+++-.++++.++++==..-..++..+ -.|...-+..+...+++||++|
T Consensus 165 T~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~--------------------------Hn~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKENVPNIKVPISVHC--------------------------HNDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCceeEEEEe--------------------------cCCcchHHHHHHHHHHhCCCEE
Confidence 99999999999999999984100001233322 1134455777788899999964
Q ss_pred EEecc--ccccCCCCccHHHHHHHHhccC
Q 026320 154 MIDSD--DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 154 iiEar--gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
++. |+=+..||..++.+-..+...+
T Consensus 219 --D~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 219 --ECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred --EEEeeccccccccccHHHHHHHHHhcc
Confidence 775 7778899999988777775543
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.37 Score=44.01 Aligned_cols=143 Identities=17% Similarity=0.164 Sum_probs=100.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.+.++++.+.|++.|=+.-. +..|+.++|.++++.+.+. | +.|+ +|+ |
T Consensus 26 ~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi--~gv-------~-------------- 82 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVY--TGV-------G-------------- 82 (296)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C--------------
Confidence 36888999999999999987433 2689999999999998873 1 1111 111 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhcc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRL 179 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~v~~i~~~~ 179 (240)
.+..+.++.++..-++||+.|++=.- =+|+..| ++..+++.+++++.
T Consensus 83 -------~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~~~ 155 (296)
T TIGR03249 83 -------GNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRC 155 (296)
T ss_pred -------ccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHhhC
Confidence 13678899999999999999998552 1477656 67788888887655
Q ss_pred CCCceEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhCccCC
Q 026320 180 GLEKTMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~~~~lif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~dVl~LE~LR~~~~G 226 (240)
+ +++. ..++..+...++++++++..+. -+..|.+.++++..|--|
T Consensus 156 ~--nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G~~~~d~~~~~~~~~Ga~G 205 (296)
T TIGR03249 156 P--NLVGFKDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTS 205 (296)
T ss_pred C--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCE
Confidence 5 3332 4567777778888888766554 333577788887755433
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.094 Score=50.49 Aligned_cols=127 Identities=11% Similarity=0.226 Sum_probs=88.2
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
+.-+=||+||..+++.+.|++-++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|+--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 556779999999999999999999997642 122211 133333334343 78999999999999999776662
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||.+.. +....+. |. +|++.+.+.++..++.|.+.|
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~i~-~dlI~Gl----------------P~-------qt~e~~~~~l~~~~~l~~~~i 225 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPILN-IDLIYGI----------------PG-------QTHASWMESLDQALVYRPEEL 225 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhCCCCEE
Confidence 2456677899999999987421 2232221 11 257888899999999999987
Q ss_pred EEec
Q 026320 154 MIDS 157 (240)
Q Consensus 154 iiEa 157 (240)
-+=.
T Consensus 226 s~y~ 229 (430)
T PRK08208 226 FLYP 229 (430)
T ss_pred EEcc
Confidence 6544
|
|
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.059 Score=50.45 Aligned_cols=125 Identities=14% Similarity=0.251 Sum_probs=88.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
|+.+=||+||..+.+++.|.+.++..+++- .+.++ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~ 128 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLF 128 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHH
Confidence 678889999999999999999999987641 11122 344443444443 58899999999999998876652
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||.... +....+. |. ++.+++.+.++..++.|++.|
T Consensus 129 lgR~~~~~~~~~ai~~l~~~G~~~v~-~dli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~~i 184 (360)
T TIGR00539 129 LGRQHSAKNIAPAIETALKSGIENIS-LDLMYGL----------------PL-------QTLNSLKEELKLAKELPINHL 184 (360)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCeEE-EeccCCC----------------CC-------CCHHHHHHHHHHHHccCCCEE
Confidence 4567778899999999986221 1111111 11 257888899999999999988
Q ss_pred EEe
Q 026320 154 MID 156 (240)
Q Consensus 154 iiE 156 (240)
-+=
T Consensus 185 s~y 187 (360)
T TIGR00539 185 SAY 187 (360)
T ss_pred Eee
Confidence 553
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.27 Score=44.13 Aligned_cols=123 Identities=19% Similarity=0.235 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt-----------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.+.+.++.+.+.|..+|=|-|++ --+|.+++.+.|+.+++.-=.. ++|-+-- .+ |. +
T Consensus 85 ~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiA---RT----Da-~--- 152 (243)
T cd00377 85 NVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIA---RT----DA-L--- 152 (243)
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEE---Ec----Cc-h---
Confidence 34455667777999999996655 4679999999999988841111 4555522 11 11 0
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch-hHHHHHHH
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR-TSEWFIRR 200 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~-qQ~~~I~~ 200 (240)
.. +..+.++.|+++++..+||||.|++++-- ..+.+.++.+.++.--++.-.|..+ ....=+.+
T Consensus 153 ~~-------~~~~~~eai~Ra~ay~~AGAD~v~v~~~~--------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~ 217 (243)
T cd00377 153 LA-------GEEGLDEAIERAKAYAEAGADGIFVEGLK--------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAE 217 (243)
T ss_pred hc-------cCCCHHHHHHHHHHHHHcCCCEEEeCCCC--------CHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHH
Confidence 00 01247899999999999999999999752 5688888988877555555555543 23333344
Q ss_pred hC
Q 026320 201 YG 202 (240)
Q Consensus 201 fG 202 (240)
.|
T Consensus 218 lG 219 (243)
T cd00377 218 LG 219 (243)
T ss_pred CC
Confidence 44
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.56 Score=43.11 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. .+-+.+.- +|.
T Consensus 29 ~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~-------~~~~~pvi-~gv----------------- 83 (303)
T PRK03620 29 AYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVET-------TAGRVPVI-AGA----------------- 83 (303)
T ss_pred HHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------hCCCCcEE-Eec-----------------
Confidence 68888999999999999774433 589999999999988773 21111000 000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCCC-CccHHHHHHHHhccCCCc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHAD-SLRADIIAKVIGRLGLEK 183 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~g-~~r~d~v~~i~~~~~~~~ 183 (240)
+. +..+.++.+++.-++||+.|++=.- -+|+..| .+-.+++.++.++.+ +
T Consensus 84 -~~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~~~~p--n 159 (303)
T PRK03620 84 -GG-GTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCP--N 159 (303)
T ss_pred -CC-CHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHhhCC--C
Confidence 01 3578899999999999999998652 2577666 677888888875554 4
Q ss_pred eEE---ecCCchhHHHHHHHhCCCcccc--cCCCCchhhhhhhCccCCC
Q 026320 184 TMF---EATNPRTSEWFIRRYGPKVNLF--VDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 184 lif---EAP~k~qQ~~~I~~fG~~VNLg--I~~~dVl~LE~LR~~~~G~ 227 (240)
++. ..++..+...++++++++..+. -+..|.+.+.++..|.-|-
T Consensus 160 i~giK~s~~d~~~~~~~~~~~~~~f~vl~G~d~~e~~~~~~~~~G~~G~ 208 (303)
T PRK03620 160 LVGFKDGVGDIELMQRIVRALGDRLLYLGGLPTAEVFAAAYLALGVPTY 208 (303)
T ss_pred EEEEEeCCCCHHHHHHHHHHcCCCeEEEeCCCcchhhHHHHHhCCCCEE
Confidence 443 3567777788888888876654 4445777788887665443
|
|
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.26 Score=43.70 Aligned_cols=148 Identities=15% Similarity=0.244 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti---~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 125 (240)
.+++.++.++++||++||+.-+ +. .++++...++-+.+++.|+++.+ +.+..+.. ... ..|+
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~~~-~~~h~~~~~nl~-~~d~--------- 81 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISPED-ILVHAPYLINLG-NPNK--------- 81 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCCCc-eEEecceEecCC-CCCH---------
Confidence 3778889999999999999753 22 45666777777788898998421 11211110 010 1111
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC--cc---HHHHHHHHhccCCCceEEecC---------Cc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS--LR---ADIIAKVIGRLGLEKTMFEAT---------NP 191 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~--~r---~d~v~~i~~~~~~~~lifEAP---------~k 191 (240)
.....+.+.+.+.++..-+.||..|++-.-..+..... .. .+.+.++++.-.-=+|.+|.- ..
T Consensus 82 ---~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~~ 158 (281)
T PRK01060 82 ---EILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRRF 158 (281)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCCH
Confidence 01112345666666666788999999865322211110 00 113333432212235788862 23
Q ss_pred hhHHHHHHHhCCC--cccccCCCCc
Q 026320 192 RTSEWFIRRYGPK--VNLFVDHSQV 214 (240)
Q Consensus 192 ~qQ~~~I~~fG~~--VNLgI~~~dV 214 (240)
.+-..+++.++.. |.+.+|..++
T Consensus 159 ~~~~~l~~~v~~~~~vg~~lD~gH~ 183 (281)
T PRK01060 159 EELARIIDGVEDKSRVGVCLDTCHA 183 (281)
T ss_pred HHHHHHHHhcCCcccEEEEEeHHhH
Confidence 4566788888753 4444665544
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.094 Score=49.63 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=83.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~-~yl~~~k~lGF~~IEISdGti------ 76 (240)
-|+-+=||+||..+.|.+.|++.++.++++= .+ ..-.|+.+.-+|+.++ ++++.+++.||+.|.+---|.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~--~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~ 131 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLW-PV--ADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLR 131 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CC--CCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 3677889999999999999999999998731 11 1113544444555544 899999999999888754444
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
.-+.++-.+.++.+++.+..+-..+ ..+. |. ++.+.+.+.++..++.+.++
T Consensus 132 ~l~R~~~~~~~~~ai~~~~~~~~~v~~dl--i~Gl----------------Pg-------qt~~~~~~~l~~~~~l~p~~ 186 (380)
T PRK09057 132 FLGRLHSVAEALAAIDLAREIFPRVSFDL--IYAR----------------PG-------QTLAAWRAELKEALSLAADH 186 (380)
T ss_pred HcCCCCCHHHHHHHHHHHHHhCccEEEEe--ecCC----------------CC-------CCHHHHHHHHHHHHhcCCCe
Confidence 2244555677888888744322221 1111 11 24678888899999999997
Q ss_pred EEE
Q 026320 153 IMI 155 (240)
Q Consensus 153 Vii 155 (240)
|-+
T Consensus 187 is~ 189 (380)
T PRK09057 187 LSL 189 (380)
T ss_pred EEe
Confidence 644
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.19 Score=46.64 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=74.9
Q ss_pred cChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 026320 18 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v 97 (240)
++.+.|++-|+.+++.-=.++.-.++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.++
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pfgvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~v 112 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPFGVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVKV 112 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCEE
Confidence 56788999999998742122211221 1122 56788999999999999998663 32 5899999988776
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCc-cHHHHHH
Q 026320 98 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSL-RADIIAK 174 (240)
Q Consensus 98 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~-r~d~v~~ 174 (240)
.+.++ + ++.+++..++|||.|+++++ |-+. |.. ..+++.+
T Consensus 113 ~~~v~-------------------------------s----~~~a~~a~~~GaD~Ivv~g~eagGh~--g~~~~~~ll~~ 155 (307)
T TIGR03151 113 IPVVA-------------------------------S----VALAKRMEKAGADAVIAEGMESGGHI--GELTTMALVPQ 155 (307)
T ss_pred EEEcC-------------------------------C----HHHHHHHHHcCCCEEEEECcccCCCC--CCCcHHHHHHH
Confidence 64221 1 45567778999999999887 2221 222 3566677
Q ss_pred HHhccC
Q 026320 175 VIGRLG 180 (240)
Q Consensus 175 i~~~~~ 180 (240)
+.+.++
T Consensus 156 v~~~~~ 161 (307)
T TIGR03151 156 VVDAVS 161 (307)
T ss_pred HHHHhC
Confidence 765543
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.23 Score=45.31 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 21 PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
+.+.+.++.++++|..+. .|..++--. .++.+.++.+.+.++|.+.|-+.|-+-.+.+.+-.++|+.++++
T Consensus 114 ~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~- 190 (274)
T cd07938 114 ERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER- 190 (274)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH-
Confidence 456677999999999873 222222111 33477788889999999999999999999999999999999985
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccc------cCCCC
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVC------KHADS 166 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~------d~~g~ 166 (240)
+. ..++++.. .. |...-+-.+...++|||++ +++- |+= +..||
T Consensus 191 ~~-~~~i~~H~-Hn-------------------------d~GlA~AN~laA~~aGa~~--id~t~~GlGgcpfa~eraGN 241 (274)
T cd07938 191 FP-DEKLALHF-HD-------------------------TRGQALANILAALEAGVRR--FDSSVGGLGGCPFAPGATGN 241 (274)
T ss_pred CC-CCeEEEEE-CC-------------------------CCChHHHHHHHHHHhCCCE--EEEeccccCCCCCCCCccCC
Confidence 21 12355533 11 2344477788889999995 5664 553 56899
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
...+.+-..++..|
T Consensus 242 ~~~E~lv~~L~~~g 255 (274)
T cd07938 242 VATEDLVYMLEGMG 255 (274)
T ss_pred cCHHHHHHHHHhcC
Confidence 99887766666544
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.28 Score=44.15 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=78.2
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 83 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r 83 (240)
.|-|.|++.+.+++.+.+-++..++.+++|+ +| + ......++.+.+.+.|.+.|-|..++-.-+..+
T Consensus 108 ~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~-~-------~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~- 178 (231)
T TIGR00736 108 TEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN-C-------IPLDELIDALNLVDDGFDGIHVDAMYPGKPYAD- 178 (231)
T ss_pred cCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC-C-------CcchHHHHHHHHHHcCCCEEEEeeCCCCCchhh-
Confidence 3558889999999999999999998888766 34 2 111345778889999999999965443222223
Q ss_pred HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 026320 84 LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 163 (240)
Q Consensus 84 ~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~ 163 (240)
.++|+++++. +..+|=+|. + .+ .+ .+.+.+.|++||+.||+ +|++..+
T Consensus 179 ~~~I~~i~~~-~~~ipIIgN---G-gI----------------------~s----~eda~e~l~~GAd~Vmv-gR~~l~~ 226 (231)
T TIGR00736 179 MDLLKILSEE-FNDKIIIGN---N-SI----------------------DD----IESAKEMLKAGADFVSV-ARAILKG 226 (231)
T ss_pred HHHHHHHHHh-cCCCcEEEE---C-Cc----------------------CC----HHHHHHHHHhCCCeEEE-cHhhccC
Confidence 5889998884 111444443 1 11 12 45666777789999998 5566544
Q ss_pred C
Q 026320 164 A 164 (240)
Q Consensus 164 ~ 164 (240)
+
T Consensus 227 ~ 227 (231)
T TIGR00736 227 N 227 (231)
T ss_pred C
Confidence 3
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.38 Score=45.16 Aligned_cols=124 Identities=15% Similarity=0.257 Sum_probs=86.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
|+.+=||+||..+.+++.|++.++.++++ ++. + ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 52 i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~--~--~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~ 127 (377)
T PRK08599 52 LKTIYIGGGTPTALSAEQLERLLTAIHRNLPLS--G--LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLK 127 (377)
T ss_pred eeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 55677899999999999999999999886 321 0 012222222222 36889999999999999987776
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
..+.++..+.|+.+++.|+.... +....+. |. +|.+++.+.++...+.|.+.
T Consensus 128 ~l~r~~~~~~~~~~i~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~~~~~~~l~~~~~l~~~~ 183 (377)
T PRK08599 128 KIGRTHNEEDVYEAIANAKKAGFDNIS-IDLIYAL----------------PG-------QTIEDFKESLAKALALDIPH 183 (377)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCCcEE-EeeecCC----------------CC-------CCHHHHHHHHHHHHccCCCE
Confidence 35677888999999999986321 2222221 10 24688888888889999998
Q ss_pred EEEe
Q 026320 153 IMID 156 (240)
Q Consensus 153 ViiE 156 (240)
|.+=
T Consensus 184 i~~y 187 (377)
T PRK08599 184 YSAY 187 (377)
T ss_pred Eeee
Confidence 7553
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.25 Score=45.32 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 23 IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+++-++.++++|..+..+ +|.- .+.-.++.+.++.+.+.++|.+.|-+.|-.--+.+.+-.++++.+++. + ....
T Consensus 117 ~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~-~-~~~~ 193 (280)
T cd07945 117 IREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR-Y-PNLH 193 (280)
T ss_pred HHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh-C-CCCe
Confidence 566689999999977754 3221 113456688999999999999999999999999999999999999873 1 1123
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
++..+ . .|...-+..+...++|||++ +++- |+=+..||...+.+-..+
T Consensus 194 i~~H~-H-------------------------nd~Gla~AN~laA~~aGa~~--vd~s~~GlGe~aGN~~~E~~v~~L 243 (280)
T cd07945 194 FDFHA-H-------------------------NDYDLAVANVLAAVKAGIKG--LHTTVNGLGERAGNAPLASVIAVL 243 (280)
T ss_pred EEEEe-C-------------------------CCCCHHHHHHHHHHHhCCCE--EEEecccccccccCccHHHHHHHH
Confidence 44432 1 12344577788889999995 6665 787889998887776655
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.25 Score=46.71 Aligned_cols=125 Identities=16% Similarity=0.205 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+.+.+-++.++++|..++.+ +|.+....++.+.++++.+.++|.+.|-+.|-+-.+.+++-.++|+.++++ +.+ .
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~-~~~--~ 186 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKEN-VKL--P 186 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcc-cCc--e
Confidence 35668888999999877643 234444556678888888999999999999999999999999999999874 122 2
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
++..+ .. |...-+-.+...++|||++ |++- |+=+..||...+.+-..+..
T Consensus 187 l~~H~-Hn-------------------------d~GlA~AN~laA~~aGa~~--vd~s~~GlGeraGN~~lE~vv~~L~~ 238 (363)
T TIGR02090 187 ISVHC-HN-------------------------DFGLATANSIAGVKAGAEQ--VHVTVNGIGERAGNAALEEVVMALKY 238 (363)
T ss_pred EEEEe-cC-------------------------CCChHHHHHHHHHHCCCCE--EEEEeeccccccccccHHHHHHHHHH
Confidence 44432 11 2233466777889999987 5554 88899999998876666544
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.58 Score=41.30 Aligned_cols=145 Identities=14% Similarity=0.180 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~~ 126 (240)
.+.+-++.++++||++||+..+.. +++.....++-+.+++.|+++.+ ++.-....... ...++
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~~~~---------- 82 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMMLGDE---------- 82 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEE-ecCcccCcCccccCCCH----------
Confidence 689999999999999999965421 34455667788888899998754 22100000000 00010
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCcc------HHHHHHHHhccCCCceEEec--C-------
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLR------ADIIAKVIGRLGLEKTMFEA--T------- 189 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r------~d~v~~i~~~~~~~~lifEA--P------- 189 (240)
.......+.+.+.++.+-..||..|++-+- +........+ -..+.+++++.|+ +|.+|. |
T Consensus 83 --~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~iE~~~~~~~~~~~ 159 (275)
T PRK09856 83 --HMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM-DLILEPLTPYESNVVC 159 (275)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCcccccC
Confidence 001123456666777777899999988652 1111111111 1223344455565 577885 2
Q ss_pred CchhHHHHHHHhC-CCcccccCC
Q 026320 190 NPRTSEWFIRRYG-PKVNLFVDH 211 (240)
Q Consensus 190 ~k~qQ~~~I~~fG-~~VNLgI~~ 211 (240)
.+..-..+++..+ |+|-+.+|+
T Consensus 160 t~~~~~~l~~~~~~~~v~~~~D~ 182 (275)
T PRK09856 160 NANDVLHALALVPSPRLFSMVDI 182 (275)
T ss_pred CHHHHHHHHHHcCCCcceeEEee
Confidence 3567888999998 566443443
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.3 Score=44.36 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.+++-++.++++|+.++.+- |-+..-.++.+.++++.+.++|.+.|-+.|-+--+.+++-.++++.+++. +. .++
T Consensus 113 ~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~-~~--~~i 187 (262)
T cd07948 113 SAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV-VS--CDI 187 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh-cC--CeE
Confidence 45666799999998777531 22333334578899999999999999999999999999999999999885 22 345
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
+..+. . |...-+-.+...++|||++ +++. |+=+..||.-.+.+-..+.
T Consensus 188 ~~H~H-n-------------------------~~Gla~an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 188 EFHGH-N-------------------------DTGCAIANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EEEEC-C-------------------------CCChHHHHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 55431 1 1233367777889999995 7776 9999999998877766654
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.21 Score=46.82 Aligned_cols=123 Identities=14% Similarity=0.242 Sum_probs=84.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE------ 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~IEISdGti~------ 77 (240)
++.+=||+||..+.+++.+++-.+..+++++. ++. |+.+.-+|+ --++.++.+++.|++.|.|+--+.+
T Consensus 52 ~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~~--eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~ 127 (374)
T PRK05799 52 IKSIFIGGGTPTYLSLEALEILKETIKKLNKK--EDL--EFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKY 127 (374)
T ss_pred eeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CCC--EEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHH
Confidence 66788999999999999898888887765542 221 333222332 3468999999999999988765552
Q ss_pred ----CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 ----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 ----l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
-+.++-.+.|+.+++.||.... +....+. |. ++.+++.+.++..++.|.+.|
T Consensus 128 l~R~~~~~~~~~ai~~l~~~g~~~v~-~dli~Gl----------------Pg-------qt~e~~~~~l~~~~~l~~~~i 183 (374)
T PRK05799 128 LGRIHTFEEFLENYKLARKLGFNNIN-VDLMFGL----------------PN-------QTLEDWKETLEKVVELNPEHI 183 (374)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCcEE-EEeecCC----------------CC-------CCHHHHHHHHHHHHhcCCCEE
Confidence 3456677889999999886221 2322221 11 257888899999999999987
Q ss_pred EE
Q 026320 154 MI 155 (240)
Q Consensus 154 ii 155 (240)
-+
T Consensus 184 s~ 185 (374)
T PRK05799 184 SC 185 (374)
T ss_pred EE
Confidence 44
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.61 Score=43.16 Aligned_cols=101 Identities=23% Similarity=0.311 Sum_probs=69.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc--------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS--------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRA 117 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt--------------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~ 117 (240)
..+.+.++++.+.|...|=|-|.+ --+|.+++.+.|+.+++. +.-++|-+- ..+ |.
T Consensus 92 ~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a--~~~~~~~Ii---ART----Da- 161 (285)
T TIGR02320 92 EHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA--QTTEDFMII---ARV----ES- 161 (285)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh--ccCCCeEEE---Eec----cc-
Confidence 356677788888999999996643 357999999999999885 122344441 111 11
Q ss_pred cccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 118 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
. +.. ...++.|+++++..+||||.|++++ +....+.+.++.+.++
T Consensus 162 ---~-----~~~---~~~~eAi~Ra~ay~eAGAD~ifv~~-------~~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 162 ---L-----ILG---KGMEDALKRAEAYAEAGADGIMIHS-------RKKDPDEILEFARRFR 206 (285)
T ss_pred ---c-----ccc---CCHHHHHHHHHHHHHcCCCEEEecC-------CCCCHHHHHHHHHHhh
Confidence 0 100 1378999999999999999999994 1234566777776664
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.2 Score=47.81 Aligned_cols=123 Identities=14% Similarity=0.328 Sum_probs=86.3
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
..|+-+=||+||-.+.+++.|++.++.++++. .+.+. .|+.+.-+|+.+ +++++.++++|++.|.|.-=|.+
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L 137 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLA-IIDNQ--TEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDL 137 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHH
Confidence 35788999999999999999999999999863 11111 244444466665 78999999999999988765552
Q ss_pred ------CChhHHHHHHHHHHHcCCcccceeee--ecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC
Q 026320 78 ------IPEETLLRYVRLVKSAGLKAKPKFAV--MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG 149 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~~v~~E~g~--k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG 149 (240)
-+.++-.+.++.+++.+. .+.+ ..+. |. ++.+.+.+.++..++.+
T Consensus 138 ~~lgR~h~~~~~~~ai~~~~~~~~----~v~~DlI~Gl----------------Pg-------qt~e~~~~~l~~~~~l~ 190 (390)
T PRK06582 138 KKLGRTHDCMQAIKTIEAANTIFP----RVSFDLIYAR----------------SG-------QTLKDWQEELKQAMQLA 190 (390)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCC----cEEEEeecCC----------------CC-------CCHHHHHHHHHHHHhcC
Confidence 244555677888877522 2333 2211 11 25788899999999999
Q ss_pred CcEEEE
Q 026320 150 ADMIMI 155 (240)
Q Consensus 150 A~~Vii 155 (240)
.++|-+
T Consensus 191 p~his~ 196 (390)
T PRK06582 191 TSHISL 196 (390)
T ss_pred CCEEEE
Confidence 987744
|
|
| >TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.61 Score=40.83 Aligned_cols=148 Identities=16% Similarity=0.133 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++... +. +..... ..++. ....|..- .
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~~-~~--~~~~~~-~~~~~--~~~~~~~~----~ 80 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVLF-NL--PAGDWA-AGERG--IACLPGRE----E 80 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEEE-eC--CCCccc-cCCCc--cccCCccH----H
Confidence 79999999999999999996521 234667777888999997642 21 110000 00000 00000000 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCC--CCccH---HHHHHH---HhccCCCceEEec-----------CCchh
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLRA---DIIAKV---IGRLGLEKTMFEA-----------TNPRT 193 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~--g~~r~---d~v~~i---~~~~~~~~lifEA-----------P~k~q 193 (240)
+..+.+-+.++..-+.||..|.+.+-....+. .+... +.+.++ ++..|+ ++.+|. +...+
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi-~l~lE~~~~~~~~~~~l~t~~~ 159 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGL-TLLIEPINSFDMPGFFLTTTEQ 159 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEECCcccCCCChhcCHHH
Confidence 00122334444555779999887653221110 11111 223333 344443 377784 24566
Q ss_pred HHHHHHHhC-CCcccccCCCCch
Q 026320 194 SEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 194 Q~~~I~~fG-~~VNLgI~~~dVl 215 (240)
-..+++..+ |||.+-.|+.+..
T Consensus 160 ~~~li~~v~~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 160 ALAVIDDVGRENLKLQYDLYHMQ 182 (254)
T ss_pred HHHHHHHhCCCCEeEeeehhhhh
Confidence 678888888 6666656666654
|
This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA. |
| >COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.66 Score=40.45 Aligned_cols=146 Identities=18% Similarity=0.208 Sum_probs=84.6
Q ss_pred chHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISd-Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
..+++.++.|+++||+.||++. +....+.++..++-+.+++.|+++..--...+. -. ..+. .+
T Consensus 15 ~~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~--~~--~~~~------------~~ 78 (274)
T COG1082 15 LPLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNN--LL--SPDE------------EE 78 (274)
T ss_pred CCHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCC--cC--CCch------------hh
Confidence 4789999999999999999998 444444444788888999999987653333221 01 0110 00
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecccc---cc---CCCCc--cHHHHH---HHHhccCCCceEEec---C-----Cc
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSDDV---CK---HADSL--RADIIA---KVIGRLGLEKTMFEA---T-----NP 191 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEargi---~d---~~g~~--r~d~v~---~i~~~~~~~~lifEA---P-----~k 191 (240)
.....+.+.+.++-.-+.||.+|++..-.. .. ....+ -.+.+. .+++.. -=++-+|. | ..
T Consensus 79 ~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-~i~l~~e~~~~~~~~~~~~ 157 (274)
T COG1082 79 REEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEEL-GIGLALENHHHPGNVVETG 157 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHh-CCceEEeecCCccceeecC
Confidence 011244555555556689999888776321 11 11111 122222 333333 33455664 3 33
Q ss_pred hhHHHHHHHhCCCcccc--cCCCCch
Q 026320 192 RTSEWFIRRYGPKVNLF--VDHSQVM 215 (240)
Q Consensus 192 ~qQ~~~I~~fG~~VNLg--I~~~dVl 215 (240)
.|...++...+.. |+| +|+.+..
T Consensus 158 ~~~~~~~~~~~~~-~v~~~lD~~H~~ 182 (274)
T COG1082 158 ADALDLLREVDSP-NVGLLLDTGHAF 182 (274)
T ss_pred HHHHHHHHhcCCC-ceEEEEecCchh
Confidence 5567888888876 665 6666544
|
|
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.34 Score=46.03 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=82.2
Q ss_pred cChhHHHHHHHHHHhCCceec-CC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 18 MPKPFIEEVVKRAHQHDVYVS-TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~-~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
++.+.|++-|+++|+||+++| +. +++--.-.. .+.+|++.+.++|-|+|+++| .-+|..+++.|-
T Consensus 46 fs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e~GvDaviv~D----------pg~i~l~~e~~p 112 (347)
T COG0826 46 FSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVELGVDAVIVAD----------PGLIMLARERGP 112 (347)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHHcCCCEEEEcC----------HHHHHHHHHhCC
Confidence 455669999999999999776 44 543222111 477999999999999999999 578999998762
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 175 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i 175 (240)
..--.++.+.. ++ + .++++-.-+.|+. .+|=+| +++-+.+.+|
T Consensus 113 ~l~ih~S~q~~---------------v~----------N----~~~~~f~~~~G~~-rvVl~r-------Els~~ei~~i 155 (347)
T COG0826 113 DLPIHVSTQAN---------------VT----------N----AETAKFWKELGAK-RVVLPR-------ELSLEEIKEI 155 (347)
T ss_pred CCcEEEeeeEe---------------cC----------C----HHHHHHHHHcCCE-EEEeCc-------cCCHHHHHHH
Confidence 21111222110 01 1 4566777788954 455566 6678888889
Q ss_pred HhccC---CCceEEecC
Q 026320 176 IGRLG---LEKTMFEAT 189 (240)
Q Consensus 176 ~~~~~---~~~lifEAP 189 (240)
.++++ +|-+.+.|=
T Consensus 156 ~~~~~~veiEvfVhGal 172 (347)
T COG0826 156 KEQTPDVEIEVFVHGAL 172 (347)
T ss_pred HHhCCCceEEEEEecch
Confidence 87764 556666653
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.3 Score=37.73 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=53.2
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCCcccccCHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 136 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 136 (240)
++.+.+.|.++|=+.--+ +...-.++++.++++|+++..++ +. .
T Consensus 69 ~~~~~~~Gad~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~~~~--------------------------------~ 113 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDLINV--------------------------------K 113 (206)
T ss_pred HHHHHHcCCCEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEecCC--------------------------------C
Confidence 677888999999654322 33445789999999988776643 32 1
Q ss_pred HHHHHHHHHHHcCCcEEEEecccc-ccCCCCccHHHHHHHHhccC
Q 026320 137 LLIRRAERCLEAGADMIMIDSDDV-CKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 137 ~~i~~~~~dLeAGA~~ViiEargi-~d~~g~~r~d~v~~i~~~~~ 180 (240)
...+.++...+.|+++|.+.. |. -..-+....+.+.++...++
T Consensus 114 t~~~~~~~~~~~g~d~v~~~p-g~~~~~~~~~~~~~i~~l~~~~~ 157 (206)
T TIGR03128 114 DKVKRAKELKELGADYIGVHT-GLDEQAKGQNPFEDLQTILKLVK 157 (206)
T ss_pred ChHHHHHHHHHcCCCEEEEcC-CcCcccCCCCCHHHHHHHHHhcC
Confidence 114555556788999998853 11 01122334555666665554
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.98 Score=40.96 Aligned_cols=158 Identities=16% Similarity=0.216 Sum_probs=105.0
Q ss_pred ccEEEecCccc---------cccChhHHHHHHHHHH-hCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 5 VDGLKFSGGSH---------SLMPKPFIEEVVKRAH-QHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 5 ID~lKfg~GTs---------~l~p~~~l~eKi~l~~-~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
||++=+||.+. ...+.+.+++-..+.+ +.-+... ++. ...+.++.+.+.|++.|-|+
T Consensus 34 Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~l~~a~~~gv~~iri~ 102 (266)
T cd07944 34 IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-----------DDIDLLEPASGSVVDMIRVA 102 (266)
T ss_pred CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-----------CCHHHHHHHhcCCcCEEEEe
Confidence 67777887654 2345666777666653 3222221 121 23567888899999999998
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
...-.+ +.-.+.|+.++++|++|. ++..+... .+++.+++.+++..++||+.
T Consensus 103 ~~~~~~--~~~~~~i~~ak~~G~~v~--~~~~~a~~------------------------~~~~~~~~~~~~~~~~g~~~ 154 (266)
T cd07944 103 FHKHEF--DEALPLIKAIKEKGYEVF--FNLMAISG------------------------YSDEELLELLELVNEIKPDV 154 (266)
T ss_pred cccccH--HHHHHHHHHHHHCCCeEE--EEEEeecC------------------------CCHHHHHHHHHHHHhCCCCE
Confidence 765543 445679999999998654 56643110 15789999999999999998
Q ss_pred EEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCC-----chhhhhhhCcc
Q 026320 153 IMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQ-----VMDLECLRGRN 224 (240)
Q Consensus 153 ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~d-----Vl~LE~LR~~~ 224 (240)
|. +.|..|...+..+.+++..+- +++++++.++ =.|++ .-+|++++.|.
T Consensus 155 i~-----l~DT~G~~~P~~v~~lv~~l~------------------~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa 209 (266)
T cd07944 155 FY-----IVDSFGSMYPEDIKRIISLLR------------------SNLDKDIKLGFHAHNNLQLALANTLEAIELGV 209 (266)
T ss_pred EE-----EecCCCCCCHHHHHHHHHHHH------------------HhcCCCceEEEEeCCCccHHHHHHHHHHHcCC
Confidence 74 688999999999999887432 3555566666 33333 23566666553
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.2 Score=45.90 Aligned_cols=86 Identities=19% Similarity=0.283 Sum_probs=61.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|..|.-.+|..-. + +..++.+....+- .+.
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------~~~~~~I~al~~agIpV~gHiGL~pq-~------~~~~gg~~i~grt----~~~ 159 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------EEVAETIKRLVERGIPVMGHLGLTPQ-S------VNVLGGYKVQGRD----EEA 159 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHCCCCEeeeecccce-e------ecccCCeeeecCC----HHH
Confidence 33456677899999999998 46778999999999999888888422 1 1111111110000 012
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 026320 135 VDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.++++++++...+|||+.|.+|+
T Consensus 160 a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 160 AEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 57999999999999999999998
|
|
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.7 Score=39.27 Aligned_cols=146 Identities=16% Similarity=0.201 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.++++++++-+-|.+.+=+.-. +..|+.++|.++++.+.+. +=++.-=+|+-
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~------------------------ 78 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVG------------------------ 78 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEE------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCc------------------------
Confidence 6888999999999999988654 4689999999999998873 11111111221
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~~~~ 179 (240)
..+.++.++.++..-++||+-|++=.- -+|+.- -++..+.+.++.+ +
T Consensus 79 ---~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~-~ 154 (289)
T PF00701_consen 79 ---ANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK-I 154 (289)
T ss_dssp ---SSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT-S
T ss_pred ---chhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc-C
Confidence 114688899999999999999998752 246653 4777888888877 5
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCCC
Q 026320 180 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 180 ~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G~ 227 (240)
+ +-=+=-...+..+...++++.++++.+... .|-.-+.+|..|.-|-
T Consensus 155 ~nv~giK~s~~~~~~~~~~~~~~~~~~~v~~G-~d~~~~~~l~~G~~G~ 202 (289)
T PF00701_consen 155 PNVVGIKDSSGDLERLIQLLRAVGPDFSVFCG-DDELLLPALAAGADGF 202 (289)
T ss_dssp TTEEEEEESSSBHHHHHHHHHHSSTTSEEEES-SGGGHHHHHHTTSSEE
T ss_pred CcEEEEEcCchhHHHHHHHhhhcccCeeeecc-ccccccccccccCCEE
Confidence 5 322233445555677788888999888665 4444578888776554
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.3 Score=38.53 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=79.0
Q ss_pred cccChhHHHHHHHHHHhCCceec-CCcH--HHHHHH-----------hC-Cc------hHHHHHHHHHHcCCCEEEecCC
Q 026320 16 SLMPKPFIEEVVKRAHQHDVYVS-TGDW--AEHLIR-----------NG-PS------AFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV~v~-~Gtl--~E~a~~-----------qg-~~------~~~~yl~~~k~lGF~~IEISdG 74 (240)
.+...+...+....+.++|+... .+++ ++.+-. ++ .+ ...++++.|++.|-+.|-+.-.
T Consensus 18 ~~~~~~~~~~~a~a~~~~G~~~~~~~~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~ 97 (221)
T PRK01130 18 PLHSPEIMAAMALAAVQGGAVGIRANGVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDAT 97 (221)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCC
Confidence 35555667788888888888433 3443 222211 00 00 1256789999999999988654
Q ss_pred cccCCh-hHHHHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 75 SLEIPE-ETLLRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 75 ti~l~~-~~r~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
...-|. ++..++++.+++ .|+.+.+++. + .+++++..++|+++
T Consensus 98 ~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-------------------------------t----~ee~~~a~~~G~d~ 142 (221)
T PRK01130 98 LRPRPDGETLAELVKRIKEYPGQLLMADCS-------------------------------T----LEEGLAAQKLGFDF 142 (221)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCeEEEeCC-------------------------------C----HHHHHHHHHcCCCE
Confidence 443232 566789999998 6666543221 1 23456778999999
Q ss_pred EEEeccccccCC---CCccHHHHHHHHhcc
Q 026320 153 IMIDSDDVCKHA---DSLRADIIAKVIGRL 179 (240)
Q Consensus 153 ViiEargi~d~~---g~~r~d~v~~i~~~~ 179 (240)
|.+..+|..... .....+.+.++.+.+
T Consensus 143 i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~ 172 (221)
T PRK01130 143 IGTTLSGYTEETKKPEEPDFALLKELLKAV 172 (221)
T ss_pred EEcCCceeecCCCCCCCcCHHHHHHHHHhC
Confidence 998877664321 222356666666554
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.34 Score=47.89 Aligned_cols=127 Identities=15% Similarity=0.252 Sum_probs=90.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHh-CCc-hHHHHHHHHHHcCCCEEEecCCccc----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPS-AFKEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~q-g~~-~~~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
-|+.+=||+||..+.+.+.+.+-++.++++-..+. ..-|+.+.. .|+ --++.++.+++.|++.|.|+--|.+
T Consensus 218 ~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vL 295 (488)
T PRK08207 218 KITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETL 295 (488)
T ss_pred ceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHH
Confidence 47788999999999999999999999887521111 111333322 122 2468899999999999999877764
Q ss_pred ------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 78 ------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-+.++-.+.++.+++.||. +-..+ -.+. | -++.+++.+.++..++.+.
T Consensus 296 k~igR~ht~e~v~~ai~~ar~~Gf~~In~DL--I~GL----------------P-------gEt~ed~~~tl~~l~~L~p 350 (488)
T PRK08207 296 KAIGRHHTVEDIIEKFHLAREMGFDNINMDL--IIGL----------------P-------GEGLEEVKHTLEEIEKLNP 350 (488)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCeEEEEE--EeCC----------------C-------CCCHHHHHHHHHHHHhcCc
Confidence 5778888999999999994 32222 2221 1 1257888999999999999
Q ss_pred cEEEEec
Q 026320 151 DMIMIDS 157 (240)
Q Consensus 151 ~~ViiEa 157 (240)
+.|-+=.
T Consensus 351 d~isv~~ 357 (488)
T PRK08207 351 ESLTVHT 357 (488)
T ss_pred CEEEEEe
Confidence 9876644
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.27 Score=44.78 Aligned_cols=86 Identities=21% Similarity=0.316 Sum_probs=62.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
..-.+..++.|.++|-|-|| ++..+.|+.+.++|..|..++|..-. + +..++.+....+- .+.
T Consensus 94 ~~a~r~~~~aGa~aVkiEd~------~~~~~~I~al~~agipV~gHiGL~pq-~------~~~~gg~~~~grt----~~~ 156 (254)
T cd06557 94 RNAARLMKEAGADAVKLEGG------AEVAETIRALVDAGIPVMGHIGLTPQ-S------VNQLGGYKVQGKT----EEE 156 (254)
T ss_pred HHHHHHHHHhCCeEEEEcCc------HHHHHHHHHHHHcCCCeeccccccce-e------eeccCCceeccCC----HHH
Confidence 33456678899999999998 47889999999999999989888421 1 1111111110000 012
Q ss_pred HHHHHHHHHHHHHcCCcEEEEec
Q 026320 135 VDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++++++..+|||+.|.+|+
T Consensus 157 a~~~i~ra~a~~~AGA~~i~lE~ 179 (254)
T cd06557 157 AERLLEDALALEEAGAFALVLEC 179 (254)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcC
Confidence 58999999999999999999998
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.42 Score=46.88 Aligned_cols=96 Identities=22% Similarity=0.336 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++++++.+.+.|++.|-|.+..-++.+ ....|+.+++.|+.| ++.+-. +.+ |.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~n--~~~~v~~ak~~G~~v--~~~i~~---t~~------------p~------- 150 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVRN--LETAVKATKKAGGHA--QVAISY---TTS------------PV------- 150 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHHH--HHHHHHHHHHcCCeE--EEEEEe---ecC------------CC-------
Confidence 4788999999999999999998777753 567899999999876 444421 111 10
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-+++.+++.+++..++||+.|- |.|..|-..+..+.++++.+
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~lv~al 192 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSIC-----IKDMAGILTPYVAYELVKRI 192 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----EcCCCCCCCHHHHHHHHHHH
Confidence 1578899999999999999764 57888888888887777654
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.3 Score=40.06 Aligned_cols=111 Identities=18% Similarity=0.213 Sum_probs=85.4
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
++.++..|-|+|=+-... ++.++..++++.+++.|+.+.-|+.-
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~---------------------------------- 169 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHD---------------------------------- 169 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 778999999999998777 46788899999999999888887755
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~-~lifEAP~-k~qQ~~~I~~fG~~VNL 207 (240)
.+++++.+++||+.|-+=.|.+-. -....+...+++..++-+ .+|-|+=- ...+...+...|.+.=|
T Consensus 170 -~~E~~~A~~~gadiIgin~rdl~~--~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vl 238 (260)
T PRK00278 170 -EEELERALKLGAPLIGINNRNLKT--FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVL 238 (260)
T ss_pred -HHHHHHHHHcCCCEEEECCCCccc--ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 234456779999999986664421 234477788888877644 67888875 47778888888988766
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.2 Score=41.62 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHHHHHHcCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IE-ISdGti-----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.++.++..|+.|++.+- .+.-+. .++.++|.+.|+.+++.|+++-+ |...+..|
T Consensus 140 ~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s--~~i~G~~E------------ 205 (343)
T TIGR03551 140 VEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA--TIMYGHVE------------ 205 (343)
T ss_pred HHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc--eEEEecCC------------
Confidence 58899999999999874 222222 25788999999999999998866 44333211
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcE------EE----EeccccccCC---CCccHHHHHHHH--hccCCCc--e
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADM------IM----IDSDDVCKHA---DSLRADIIAKVI--GRLGLEK--T 184 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~------Vi----iEargi~d~~---g~~r~d~v~~i~--~~~~~~~--l 184 (240)
+.+++++.+..--+.+.++ |- .++-.+++.. ..+..+..-+++ .++=+.+ +
T Consensus 206 ------------t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~ 273 (343)
T TIGR03551 206 ------------TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLID 273 (343)
T ss_pred ------------CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCccc
Confidence 3456666665555555443 21 2344566431 223343333333 4444333 2
Q ss_pred EEecCC----chhHHHHHHHhCCCcccc-cCCCCch
Q 026320 185 MFEATN----PRTSEWFIRRYGPKVNLF-VDHSQVM 215 (240)
Q Consensus 185 ifEAP~----k~qQ~~~I~~fG~~VNLg-I~~~dVl 215 (240)
-.-|+. +. +..+...+|.|.==| +-+++|.
T Consensus 274 ~i~a~~~~l~~~-~~~~~l~~Gan~~~g~~~~e~v~ 308 (343)
T TIGR03551 274 NIQASWVKLGKK-LAQVALRCGANDLGGTLMEESIS 308 (343)
T ss_pred CeeccccccCHH-HHHHHHhCCCccCCccceecccc
Confidence 466663 33 334556778776445 5555554
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.43 Score=47.59 Aligned_cols=141 Identities=14% Similarity=0.076 Sum_probs=98.1
Q ss_pred ccEEEecCccccccChh-----------HHHHHHHHHHhCCceecCCc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 5 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~-----------~l~eKi~l~~~~gV~v~~Gt-l~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
+|.+-+...||-++-+. .+++-++.++++|..+..+. ++.-+.+..++.+-++.+.+.+.|.+.|-+.
T Consensus 99 ~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~ 178 (524)
T PRK12344 99 TPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC 178 (524)
T ss_pred CCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc
Confidence 34555555555443322 35578899999999887653 3322334455567788888899999999999
Q ss_pred CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 73 VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 73 dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
|-.--+.+.+-.++|+.++++ +. ..+++.+ .. |...-+-.....++|||+.
T Consensus 179 DTvG~~~P~~v~~li~~l~~~-~~--v~i~~H~-HN-------------------------D~GlA~ANslaAi~aGa~~ 229 (524)
T PRK12344 179 DTNGGTLPHEVAEIVAEVRAA-PG--VPLGIHA-HN-------------------------DSGCAVANSLAAVEAGARQ 229 (524)
T ss_pred cCCCCcCHHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCChHHHHHHHHHHhCCCE
Confidence 999999999999999999885 22 2344432 11 2334466777789999996
Q ss_pred EEEecc--ccccCCCCccHHHHHHHH
Q 026320 153 IMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 153 ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
||+- |+=+..||...+.+-..+
T Consensus 230 --Vd~Tl~GlGERaGNa~lE~lv~~L 253 (524)
T PRK12344 230 --VQGTINGYGERCGNANLCSIIPNL 253 (524)
T ss_pred --EEEecccccccccCcCHHHHHHHH
Confidence 5665 888888988877665333
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.49 Score=45.92 Aligned_cols=124 Identities=11% Similarity=0.152 Sum_probs=84.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 76 (240)
-|+-+=||+||..+.+.+.|++-++.++++ ++. + -.|+.+.-+|+. -++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~--~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLA--P--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCC--C--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 478889999999999999999999999885 221 1 122222222322 36889999999999987755443
Q ss_pred -----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 -----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 -----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.-+.++-.+.|+.+++.||.... +..-.+. |. +|.+.+.+.++..++.|.+
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~~v~-~DlI~Gl----------------Pg-------qT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRAAVV-CDLIFGL----------------PG-------QTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCCcEE-EEEEeeC----------------CC-------CCHHHHHHHHHHHHhcCCC
Confidence 23445556778888888865322 2222221 11 2578889999999999999
Q ss_pred EEEE
Q 026320 152 MIMI 155 (240)
Q Consensus 152 ~Vii 155 (240)
.|-+
T Consensus 246 ~is~ 249 (449)
T PRK09058 246 GVDL 249 (449)
T ss_pred EEEE
Confidence 7754
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.52 Score=47.79 Aligned_cols=96 Identities=16% Similarity=0.224 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.++.+++.+.+.|.+.|-|.|..-+++ .-...|+.+++.|+.+..-+.... + +.
T Consensus 98 vv~~~v~~a~~~Gid~~rifd~lnd~~--~~~~ai~~ak~~G~~~~~~i~yt~--~---p~------------------- 151 (593)
T PRK14040 98 VVERFVERAVKNGMDVFRVFDAMNDPR--NLETALKAVRKVGAHAQGTLSYTT--S---PV------------------- 151 (593)
T ss_pred HHHHHHHHHHhcCCCEEEEeeeCCcHH--HHHHHHHHHHHcCCeEEEEEEEee--C---Cc-------------------
Confidence 688999999999999999999777763 455689999999997654443311 0 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+++.+.+.++.-.++||+.|- |+|..|-..+..+.++++.+
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~-----i~Dt~G~l~P~~~~~lv~~l 193 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLC-----IKDMAGLLKPYAAYELVSRI 193 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1478889999999999999764 68999999999998888755
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.88 Score=42.17 Aligned_cols=111 Identities=18% Similarity=0.253 Sum_probs=71.9
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCce--ecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec-CCcccCC---
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN-VGSLEIP--- 79 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~--v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS-dGti~l~--- 79 (240)
.+-|.+|=-.+.| .+.+.++.+++.|+. +.| |++++- .+ +..+..|...|-|| ||.-+.-
T Consensus 75 ~V~i~GGEPLL~p--dl~eiv~~~~~~g~~v~l~TNG~ll~~-------~~----~~l~~~~~~~i~VSLDG~~e~hd~~ 141 (318)
T TIGR03470 75 VVSIPGGEPLLHP--EIDEIVRGLVARKKFVYLCTNALLLEK-------KL----DKFEPSPYLTFSVHLDGLREHHDAS 141 (318)
T ss_pred EEEEeCccccccc--cHHHHHHHHHHcCCeEEEecCceehHH-------HH----HHHHhCCCcEEEEEEecCchhhchh
Confidence 4567778777776 589999999998864 446 776542 22 23356788888888 6643221
Q ss_pred ------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 80 ------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 80 ------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
.+.-.+.|+.++++|+.|..-+.+-. . .+++++.+.++..-+.|++.|
T Consensus 142 ~~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~-------~-------------------~n~~ei~~~~~~~~~lGv~~i 195 (318)
T TIGR03470 142 VCREGVFDRAVEAIREAKARGFRVTTNTTLFN-------D-------------------TDPEEVAEFFDYLTDLGVDGM 195 (318)
T ss_pred hcCCCcHHHHHHHHHHHHHCCCcEEEEEEEeC-------C-------------------CCHHHHHHHHHHHHHcCCCEE
Confidence 23335789999999987665554411 0 124555555555567899888
Q ss_pred EEe
Q 026320 154 MID 156 (240)
Q Consensus 154 iiE 156 (240)
.+-
T Consensus 196 ~i~ 198 (318)
T TIGR03470 196 TIS 198 (318)
T ss_pred EEe
Confidence 773
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.4 Score=42.76 Aligned_cols=107 Identities=18% Similarity=0.192 Sum_probs=73.5
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL 84 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~ 84 (240)
.|-|.|...+.+++.+.+.++-.++.+++++- .+|- . ...+..+.+.+.|.++|-++.+.-.. ..+ .
T Consensus 113 ~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~~la~~l~~aG~d~ihv~~~~~g~-~ad-~ 182 (233)
T cd02911 113 VEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDEELARLIEKAGADIIHVDAMDPGN-HAD-L 182 (233)
T ss_pred hcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHHHHHHHHHHhCCCEEEECcCCCCC-CCc-H
Confidence 46688999999999999999999998887763 2331 1 45667788899999999998765432 222 3
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
++|+.++ .. +|=++. + .+ .| .+.+++.++.|||.||+ ||+
T Consensus 183 ~~I~~i~-~~---ipVIgn---G-gI----------------------~s----~eda~~~l~~GaD~Vmi-GR~ 222 (233)
T cd02911 183 KKIRDIS-TE---LFIIGN---N-SV----------------------TT----IESAKEMFSYGADMVSV-ARA 222 (233)
T ss_pred HHHHHhc-CC---CEEEEE---C-Cc----------------------CC----HHHHHHHHHcCCCEEEE-cCC
Confidence 6777765 11 333333 1 11 12 46667777889999998 554
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.37 Score=42.00 Aligned_cols=93 Identities=24% Similarity=0.343 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--------C----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEI--------P----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l--------~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
++.-++.+++.|.+.|.+....-++ + .+.-.++++.+++.|++| .|+..+..
T Consensus 69 i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~~~~~-------------- 132 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGCEDAS-------------- 132 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEETTTG--------------
T ss_pred HHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCccccc--------------
Confidence 5555777888999999998655441 1 234457899999999998 56653210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
..+++.+.+.+++..++|++.| .|.|..|...++.+.++++
T Consensus 133 ----------~~~~~~~~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~lv~ 173 (237)
T PF00682_consen 133 ----------RTDPEELLELAEALAEAGADII-----YLADTVGIMTPEDVAELVR 173 (237)
T ss_dssp ----------GSSHHHHHHHHHHHHHHT-SEE-----EEEETTS-S-HHHHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHcCCeEE-----EeeCccCCcCHHHHHHHHH
Confidence 1158999999999999999988 4788899999998888876
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.9 Score=39.95 Aligned_cols=115 Identities=18% Similarity=0.341 Sum_probs=76.4
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-c---eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~g-V---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-- 77 (240)
+..+.|.+|.-.+.+ .+.+-++.+++++ + .+.| |+++ .++.+.+++.|++.|-||=.+++
T Consensus 62 v~~I~~tGGEPllr~--dl~~li~~i~~~~~l~~i~itTNG~ll-----------~~~~~~L~~aGl~~v~ISlDs~~~e 128 (329)
T PRK13361 62 VRKIRLTGGEPLVRR--GCDQLVARLGKLPGLEELSLTTNGSRL-----------ARFAAELADAGLKRLNISLDTLRPE 128 (329)
T ss_pred CCEEEEECcCCCccc--cHHHHHHHHHhCCCCceEEEEeChhHH-----------HHHHHHHHHcCCCeEEEEeccCCHH
Confidence 566888888877765 5778888887764 2 2334 5443 34567778899999999977763
Q ss_pred --------CChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 78 --------IPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 78 --------l~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
-+.+.-.+.|+.+++.|+ .++-.+-+..+ .+.+++.+.++-..+.
T Consensus 129 ~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g--------------------------~N~~ei~~~~~~~~~~ 182 (329)
T PRK13361 129 LFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRG--------------------------QNDDEVLDLVEFCRER 182 (329)
T ss_pred HhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECC--------------------------CCHHHHHHHHHHHHhc
Confidence 234566788888888887 44433332110 0235556666666688
Q ss_pred CCcEEEEecc
Q 026320 149 GADMIMIDSD 158 (240)
Q Consensus 149 GA~~ViiEar 158 (240)
|+++..+|--
T Consensus 183 gi~~~~ie~m 192 (329)
T PRK13361 183 GLDIAFIEEM 192 (329)
T ss_pred CCeEEEEecc
Confidence 9999999865
|
|
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.5 Score=34.28 Aligned_cols=119 Identities=22% Similarity=0.276 Sum_probs=79.1
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCC-----ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~g-----V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 76 (240)
++.+-|+.|+..+.+.+.+.+.++.++++. ..+...| .+...-++.++.+++.|++.|-+|=-+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 578889999999998776888888888774 2222211 1111236788899999999888876653
Q ss_pred -------cCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc
Q 026320 77 -------EIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA 148 (240)
Q Consensus 77 -------~l~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA 148 (240)
.-+.+.+.+.|+.+++.| +.+..-+-+ +. .. ++.+++.+.++...+.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~~~~~~--g~-----~~------------------~~~~~~~~~~~~~~~~ 179 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVSTDLIV--GL-----PG------------------ETEEDFEETLKLLKEL 179 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceEEeEEe--cC-----CC------------------CCHHHHHHHHHHHHHc
Confidence 345688889999999999 444332222 11 00 1346666666666788
Q ss_pred CCcEEEE
Q 026320 149 GADMIMI 155 (240)
Q Consensus 149 GA~~Vii 155 (240)
|++.|.+
T Consensus 180 ~~~~i~~ 186 (216)
T smart00729 180 GPDRVSI 186 (216)
T ss_pred CCCeEEe
Confidence 9986554
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=2.2 Score=39.07 Aligned_cols=114 Identities=19% Similarity=0.228 Sum_probs=73.5
Q ss_pred cEEEecCccccccChhHHHHHHHHHHh-CCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc------
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~-~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
..+-|..|+...++.+.+.+-++..++ .++.+. +|. .-++.++..++.|++.|-++=-|.
T Consensus 88 ~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~ 156 (323)
T PRK07094 88 RTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKELYA 156 (323)
T ss_pred CEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHHHH
Confidence 344455555444555566666666666 355432 221 236788889999999887654443
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
..+.+++.+.|+.+++.|+.+.+-+=+ +. ++ ++.+++.+.++...+.+++.
T Consensus 157 ~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~ii--Gl----pg-------------------et~ed~~~~l~~l~~l~~~~ 211 (323)
T PRK07094 157 KLHPGMSFENRIACLKDLKELGYEVGSGFMV--GL----PG-------------------QTLEDLADDILFLKELDLDM 211 (323)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeecceEEE--EC----CC-------------------CCHHHHHHHHHHHHhCCCCe
Confidence 467889999999999999876654333 21 01 13577777777777888887
Q ss_pred EEE
Q 026320 153 IMI 155 (240)
Q Consensus 153 Vii 155 (240)
+-+
T Consensus 212 v~~ 214 (323)
T PRK07094 212 IGI 214 (323)
T ss_pred eee
Confidence 655
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.44 Score=44.96 Aligned_cols=99 Identities=10% Similarity=0.084 Sum_probs=70.0
Q ss_pred cccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 14 SHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
....++++.|++.|+-+++. .=.++.=+++ .+ ..+..+++.++.|.+.+...|-++-|. |. . ++++++
T Consensus 33 a~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~--~~-~~~~~~~~~l~vi~e~~v~~V~~~~G~---P~----~-~~~lk~ 101 (320)
T cd04743 33 ALALMRGEQVKALLEETAELLGDKPWGVGIL--GF-VDTELRAAQLAVVRAIKPTFALIAGGR---PD----Q-ARALEA 101 (320)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCeEEEEe--cc-CCCcchHHHHHHHHhcCCcEEEEcCCC---hH----H-HHHHHH
Confidence 34567888999999999884 3333321220 00 111247899999999999999998663 32 1 588999
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 93 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 93 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.|.+|++.++- ++.+++.+++|||.||+|+.
T Consensus 102 ~Gi~v~~~v~s-----------------------------------~~~A~~a~~~GaD~vVaqG~ 132 (320)
T cd04743 102 IGISTYLHVPS-----------------------------------PGLLKQFLENGARKFIFEGR 132 (320)
T ss_pred CCCEEEEEeCC-----------------------------------HHHHHHHHHcCCCEEEEecC
Confidence 98888754322 56678889999999999997
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=93.51 E-value=2.3 Score=39.00 Aligned_cols=77 Identities=19% Similarity=0.113 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|. .|+ +
T Consensus 22 ~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi--~gv-------~--------------- 77 (294)
T TIGR02313 22 ALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFA--PGT-------G--------------- 77 (294)
T ss_pred HHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C---------------
Confidence 67888999999999999876554 489999999999988772 1 1111 122 0
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..+..+.++.++..-++||+.|++-.-
T Consensus 78 -----~~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 78 -----ALNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred -----cchHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 114678899999999999999999885
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.65 Score=42.74 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=58.9
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
+..++.|.++|-|-+| .+....|+.+.+.|.-|.-.+|..-.... .++.+....+ -.++.+++
T Consensus 100 rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~gIpV~gHiGltPq~a~-------~~ggy~~qgr----t~~~a~~~ 162 (263)
T TIGR00222 100 RVMQETGANAVKLEGG------EWLVETVQMLTERGVPVVGHLGLTPQSVN-------ILGGYKVQGK----DEEAAKKL 162 (263)
T ss_pred HHHHHhCCeEEEEcCc------HhHHHHHHHHHHCCCCEEEecCCCceeEe-------ecCCeeecCC----CHHHHHHH
Confidence 6677889999999998 55678899999999999988877432110 0011111000 01235799
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 026320 139 IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa 157 (240)
|+++++-.+|||+.|.+|+
T Consensus 163 i~~A~a~e~AGA~~ivlE~ 181 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLEC 181 (263)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999999998
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.69 Score=46.12 Aligned_cols=96 Identities=21% Similarity=0.296 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.+++.+.+.|++.+-|.|..-++ +.....|+.+++.|..+...+...- + | .
T Consensus 98 vv~~fv~~a~~~Gidi~RIfd~lndv--~nl~~ai~~vk~ag~~~~~~i~yt~--s---------------p-------~ 151 (499)
T PRK12330 98 VVDRFVEKSAENGMDVFRVFDALNDP--RNLEHAMKAVKKVGKHAQGTICYTV--S---------------P-------I 151 (499)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCChH--HHHHHHHHHHHHhCCeEEEEEEEec--C---------------C-------C
Confidence 67889999999999999999999988 5555689999999987755554411 1 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.|++.+++.+++-.++||+.| .|.|..|-..+..+.++++.+
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I-----~IkDtaGll~P~~~~~LV~~L 193 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSI-----CIKDMAALLKPQPAYDIVKGI 193 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EeCCCccCCCHHHHHHHHHHH
Confidence 158999999999999999977 467888888888777777654
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=2.7 Score=38.31 Aligned_cols=143 Identities=11% Similarity=0.026 Sum_probs=92.2
Q ss_pred chHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecC-CCCCCCccccccccccccCC
Q 026320 52 SAFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 52 ~~~~~yl~~~k~-lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~evg~~~d~~~~~~~~~~~ 126 (240)
+.++++++++.+ .|.+.|=+.-.| ..|+.++|.++++.+.+. ..-+.+ ..-+|
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~-------~~~~~~viagvg--------------- 81 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEE-------AKGKVKLIAQVG--------------- 81 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHH-------hCCCCCEEecCC---------------
Confidence 368899999999 999999886553 589999999999999883 221111 00011
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchh---HHHHHHHhCC
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRT---SEWFIRRYGP 203 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~q---Q~~~I~~fG~ 203 (240)
..+..+.+++++..-++||+.|++=.--.+...-+---+-..++++..++.-+++-.|.... -..++.++-.
T Consensus 82 -----~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 82 -----SVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 11468889999999999999999987544333221123334556677777778887774322 3445555543
Q ss_pred Cccc-c--cCCCCchhhhhhh
Q 026320 204 KVNL-F--VDHSQVMDLECLR 221 (240)
Q Consensus 204 ~VNL-g--I~~~dVl~LE~LR 221 (240)
.=|+ | -...|+..+..++
T Consensus 157 ~pnvvgiK~s~~d~~~~~~~~ 177 (293)
T PRK04147 157 LPKVIGVKQTAGDLYQLERIR 177 (293)
T ss_pred CCCEEEEEeCCCCHHHHHHHH
Confidence 3344 3 4455666655554
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.39 E-value=1.4 Score=40.70 Aligned_cols=117 Identities=18% Similarity=0.278 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 22 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
..-+.++..++.++.+.-+ |+.--.+.+| ++.|++.|++.|++.+=| .+||.++..++...++++|+..++
T Consensus 80 ~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 80 DTLELVEEIRAKGVKVPIVLMTYYNPIFNYG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIF 152 (265)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHHHhh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEE
Confidence 4556777778777766655 7888888885 999999999999998876 579999999999999999888777
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHHhc
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~~~ 178 (240)
=+-.. +++++++.+ .++..-+|-.=++ |++........+ +.+++++
T Consensus 153 lvaPt-----------------------------t~~~rl~~i---~~~a~GFiY~vs~~GvTG~~~~~~~~-~~~~v~~ 199 (265)
T COG0159 153 LVAPT-----------------------------TPDERLKKI---AEAASGFIYYVSRMGVTGARNPVSAD-VKELVKR 199 (265)
T ss_pred EeCCC-----------------------------CCHHHHHHH---HHhCCCcEEEEecccccCCCcccchh-HHHHHHH
Confidence 44331 234455544 4566667777787 887777665444 5555543
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.72 Score=41.64 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=64.2
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
+..-+.|.++|-|=|+. +..+.|+.+++.++.|.-..+.... +-.....++.+++. ..+.++.
T Consensus 96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~i~ViaRtd~~pq-~~~~~gg~~~~~~~----------~~~~~~a 158 (240)
T cd06556 96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAAVPVIAHTGLTPQ-SVNTSGGDEGQYRG----------DEAGEQL 158 (240)
T ss_pred HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcCCeEEEEeCCchh-hhhccCCceeeccC----------HHHHHHH
Confidence 33345899999999984 4566788899998776665554210 00000111111110 1247899
Q ss_pred HHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 139 IRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
|++++...+|||+.|.+|+. ..+++.+|.+.++.
T Consensus 159 i~Ra~ay~~AGAd~i~~e~~---------~~e~~~~i~~~~~~ 192 (240)
T cd06556 159 IADALAYAPAGADLIVMECV---------PVELAKQITEALAI 192 (240)
T ss_pred HHHHHHHHHcCCCEEEEcCC---------CHHHHHHHHHhCCC
Confidence 99999999999999999963 47778888877663
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.3 Score=38.13 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=15.8
Q ss_pred CCCcccEEEecCccccccChhHHHH
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEE 25 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~e 25 (240)
.++++|.+|.|..-..-+..+.+++
T Consensus 25 ~~~~~~~vk~g~~l~~~~G~~~v~~ 49 (215)
T PRK13813 25 LDDYVDAIKVGWPLVLASGLGIIEE 49 (215)
T ss_pred ccccCCEEEEcHHHHHhhCHHHHHH
Confidence 3688999999965544455444433
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.95 Score=40.60 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
.+.++.+.+.|.+.|-|..-.-++ +.-.+.++.+++.|+.|.. ...+. + ..+
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--~~~~~~i~~ak~~G~~v~~--~~~~~-~-----------------------~~~ 139 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--DVSEQHIGAARKLGMDVVG--FLMMS-H-----------------------MAS 139 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--HHHHHHHHHHHHCCCeEEE--EEEec-c-----------------------CCC
Confidence 356788899999999986543332 3556799999999986433 33211 0 015
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 135 VDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
++.+++.+++..++||+.|- +.|..|...++.+.++++.+
T Consensus 140 ~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 140 PEELAEQAKLMESYGADCVY-----VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred HHHHHHHHHHHHHcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 78999999999999999764 78899999999998888644
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.68 Score=42.59 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=68.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
+=++.+.+.|.+.|-+...+-+. +.+ .-.+.|+.+++.|++|..-+..-+.. ..+
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~-----~~~-------- 149 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGC-----PYE-------- 149 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecC-----CCC--------
Confidence 33578889999999998655322 222 34579999999999876544443211 011
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+++.+++..++||+.|. +.|..|-..+..+.++++.+
T Consensus 150 -------~~~~~~~~~~~~~~~~~~G~d~i~-----l~DT~G~~~P~~v~~lv~~l 193 (287)
T PRK05692 150 -------GEVPPEAVADVAERLFALGCYEIS-----LGDTIGVGTPGQVRAVLEAV 193 (287)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCcEEE-----eccccCccCHHHHHHHHHHH
Confidence 112689999999999999999764 57788888888777777543
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.21 E-value=2.7 Score=38.49 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHcC-CCEEEecCC---cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVG-FDTIELNVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lG-F~~IEISdG---ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+.| .+.|=+.-. +..|+.++|.++++.+.+. +...+.+-.+ ++
T Consensus 22 ~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~---~~~~~pvi~g---v~----------------- 78 (290)
T TIGR00683 22 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDE---AKDQIALIAQ---VG----------------- 78 (290)
T ss_pred HHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHH---hCCCCcEEEe---cC-----------------
Confidence 6888999999999 999887754 3589999999999998883 1111111111 10
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..+.++.++.++..-++||+.|++=.
T Consensus 79 ---~~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 79 ---SVNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred ---CCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 01467889999999999999999944
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.5 Score=40.00 Aligned_cols=60 Identities=15% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 33 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 33 ~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.++++..=|++...+..| +++|++.|++.|++.+=|. +||.++..++++.++++|+..++
T Consensus 88 ~~~p~vlm~Y~N~i~~~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 88 PTIPIVLMTYYNPIFQYG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred CCCCEEEEecccHHhhcC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 455444336777777775 9999999999999999996 68999999999999999998775
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.85 Score=42.93 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
+-++.+.+.|.+.|-|....-+. +.-.+.|+.+++.|++|. +...... ..++
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~--~~~~~~i~~ak~~G~~v~--~~l~~a~------------------------~~~~ 143 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA--DVSEQHIGLARELGMDTV--GFLMMSH------------------------MAPP 143 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH--HHHHHHHHHHHHCCCeEE--EEEEecc------------------------CCCH
Confidence 45788999999999998755443 345689999999998753 3442210 1158
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+.++++++...++||+.| .+.|..|...++.+.+++..+
T Consensus 144 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 182 (337)
T PRK08195 144 EKLAEQAKLMESYGAQCV-----YVVDSAGALLPEDVRDRVRAL 182 (337)
T ss_pred HHHHHHHHHHHhCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 468999999999999888643
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.05 E-value=1.3 Score=43.70 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=93.0
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
||.+-+....+- .+.+++-++.++++|..+... |+- - ...++.+-++.+.+.+.|.+.|=|.|-.--+.+.
T Consensus 109 vd~irif~~lnd---~~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 182 (467)
T PRK14041 109 LDIIRIFDALND---IRNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPK 182 (467)
T ss_pred cCEEEEEEeCCH---HHHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHH
Confidence 555555544443 356888888888888866521 110 0 1122356666777788899999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.+++. +.+ .++... +. |...-+-..-..++|||+.|=.=-.|+-
T Consensus 183 ~v~~Lv~~lk~~-~~v--pI~~H~-Hn-------------------------t~GlA~AN~laAieaGad~vD~sv~~~g 233 (467)
T PRK14041 183 RAYELVKALKKK-FGV--PVEVHS-HC-------------------------TTGLASLAYLAAVEAGADMFDTAISPFS 233 (467)
T ss_pred HHHHHHHHHHHh-cCC--ceEEEe-cC-------------------------CCCcHHHHHHHHHHhCCCEEEeeccccC
Confidence 999999999874 221 234422 11 1233366777789999996433334787
Q ss_pred cCCCCccHHHHHHHHhccCC
Q 026320 162 KHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~ 181 (240)
...||..++.+-..++..|.
T Consensus 234 ~gagN~atE~lv~~L~~~g~ 253 (467)
T PRK14041 234 MGTSQPPFESMYYAFRENGK 253 (467)
T ss_pred CCCCChhHHHHHHHHHhcCC
Confidence 88899888877777666553
|
|
| >cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.4 Score=45.29 Aligned_cols=178 Identities=20% Similarity=0.249 Sum_probs=93.7
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhCCceecC--------C-cHHHHHHHhCC----chHHHHHHHHHHcCCCEE
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGP----SAFKEYVEDCKQVGFDTI 69 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~--------G-tl~E~a~~qg~----~~~~~yl~~~k~lGF~~I 69 (240)
+|||.+ .-|+-+++..+. ..-|+.||+|||+|.+ + .+++.++.+++ --+++.++.|+.+|||.+
T Consensus 31 ~yvD~f-vywsh~~~~iPp--~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw 107 (339)
T cd06547 31 QYVDTF-VYFSHSAVTIPP--ADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGW 107 (339)
T ss_pred hhhhee-ecccCccccCCC--cHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCce
Confidence 578877 445555554421 4678899999999873 1 25666666522 127889999999999998
Q ss_pred EecCCcccCChhHHHHHH---HHHHHcCCcccceeeee-----------cCCCCCCCcccccc----ccccccCCCCccc
Q 026320 70 ELNVGSLEIPEETLLRYV---RLVKSAGLKAKPKFAVM-----------FNKSDIPSDRDRAF----GAYVARAPRSTEY 131 (240)
Q Consensus 70 EISdGti~l~~~~r~~lI---~~~~~~G~~v~~E~g~k-----------~~~~evg~~~d~~~----~~~~~~~~~~~~~ 131 (240)
=|+-=+..-+.+.+.+++ +.+++..=+-.|.+-+. ..-.+... ++..| .....-+.|....
T Consensus 108 ~iN~E~~~~~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~-~N~~ff~~~D~~FlNY~W~~~~ 186 (339)
T cd06547 108 LINIETELGDAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNS-KNKPFFDVCDGIFLNYWWTEES 186 (339)
T ss_pred EeeeeccCCcHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhH-HHHHHHhhhcceeEecCCCcch
Confidence 887666542444444444 44444311111112111 00011110 11110 0112345665433
Q ss_pred ccCHHHHHHHH---HHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 132 VEDVDLLIRRA---ERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 132 ~~~~~~~i~~~---~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
.+.-.+..+.+ ..||=+|.|. .+||.+ ..+++.++..-..+.+.++.-=|| ||
T Consensus 187 l~~s~~~a~~~g~~~~dvy~GiDv---~grg~~-~~~~~~~~~~~~~~~~~~~Svalf-ap 242 (339)
T cd06547 187 LERSVQLAEGLGRSPYDVYVGVDV---WGRGTK-GGGGWNSDKALDEIKKAGLSVALF-AP 242 (339)
T ss_pred HHHHHHHHHHcCCCHhHEEEEEEE---EcCCcc-cCCCCchhhhhhhhcccCeEEEEE-cC
Confidence 22222222222 3466667664 478754 456665555555556666666677 66
|
The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.86 Score=42.88 Aligned_cols=91 Identities=14% Similarity=0.189 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
+-++.+.+.|.+.|-|....-+.+ .-.+.|+.+++.|++|. +...... ..++
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~d--~~~~~i~~ak~~G~~v~--~~l~~s~------------------------~~~~ 142 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEAD--VSEQHIGMARELGMDTV--GFLMMSH------------------------MTPP 142 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchHH--HHHHHHHHHHHcCCeEE--EEEEccc------------------------CCCH
Confidence 457889999999999987655543 34689999999998754 3332210 1158
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+.++++++.-.++||+.| .|.|..|...++.+.+++..+
T Consensus 143 e~l~~~a~~~~~~Ga~~i-----~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 143 EKLAEQAKLMESYGADCV-----YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred HHHHHHHHHHHhcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 999999999999999976 478999999999998888644
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.89 Score=40.68 Aligned_cols=132 Identities=23% Similarity=0.253 Sum_probs=86.6
Q ss_pred ccChhHHHHHHHHHHhCCcee----cC--C-cH---HHHHHHhCCc--------hHHHHHHHHHHcCCCEEEecCCcccC
Q 026320 17 LMPKPFIEEVVKRAHQHDVYV----ST--G-DW---AEHLIRNGPS--------AFKEYVEDCKQVGFDTIELNVGSLEI 78 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v----~~--G-tl---~E~a~~qg~~--------~~~~yl~~~k~lGF~~IEISdGti~l 78 (240)
.++.+...+-++.+.+.||.. +| + +- ++.+...+++ .-.+-++.+.+.|++.|-++..+-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~ 95 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDI 95 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHH
Confidence 355556666677777777733 23 2 21 2222221110 12556788899999999997644333
Q ss_pred C--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHH
Q 026320 79 P--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL 146 (240)
Q Consensus 79 ~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL 146 (240)
. . +.-.+.++.+++.|+.|. |+..+.. ..+++.+.+.+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~------------------------~~~~~~~~~~~~~~~ 149 (259)
T cd07939 96 HLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGAEDAS------------------------RADPDFLIEFAEVAQ 149 (259)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--EeeccCC------------------------CCCHHHHHHHHHHHH
Confidence 1 1 234578999999998653 4442210 115899999999999
Q ss_pred HcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 147 EAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 147 eAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
++|++.| .++|..|...++.+.+++..+
T Consensus 150 ~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 177 (259)
T cd07939 150 EAGADRL-----RFADTVGILDPFTTYELIRRL 177 (259)
T ss_pred HCCCCEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence 9999976 478999999999999888643
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=92.95 E-value=1 Score=42.62 Aligned_cols=96 Identities=26% Similarity=0.389 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
..+-++.+.+.|.+.|.|+..+=++ +. +.-.+.|+.+++.|++| +++..+..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v--~~~~eda~-------------- 136 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV--EFSAEDAT-------------- 136 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEEEeecC--------------
Confidence 3566888999999999997765333 33 44457899999999876 46653210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
..|++.+++.+++..++||+.|. ++|..|...++.+.++++.+-
T Consensus 137 ----------r~~~~~l~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~li~~l~ 180 (363)
T TIGR02090 137 ----------RTDIDFLIKVFKRAEEAGADRIN-----IADTVGVLTPQKMEELIKKLK 180 (363)
T ss_pred ----------CCCHHHHHHHHHHHHhCCCCEEE-----EeCCCCccCHHHHHHHHHHHh
Confidence 11589999999999999998764 688889999988888887653
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.99 Score=44.81 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChh--------H----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEE--------T----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~--------~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
.++.-++..++.|.+.|-+...+-++-.. + -.+.|+.+++.|++| +|+..+..
T Consensus 80 did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~f~~ed~~------------- 144 (513)
T PRK00915 80 DIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDV--EFSAEDAT------------- 144 (513)
T ss_pred HHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeCCCC-------------
Confidence 46666666668899999998877544322 2 247899999999886 45553210
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 145 -----------r~d~~~l~~~~~~~~~~Ga~~i-----~l~DTvG~~~P~~~~~~i~~l 187 (513)
T PRK00915 145 -----------RTDLDFLCRVVEAAIDAGATTI-----NIPDTVGYTTPEEFGELIKTL 187 (513)
T ss_pred -----------CCCHHHHHHHHHHHHHcCCCEE-----EEccCCCCCCHHHHHHHHHHH
Confidence 1258899999999999999865 478999999999888888644
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.71 Score=45.28 Aligned_cols=143 Identities=14% Similarity=0.164 Sum_probs=96.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceec--CC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~--~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
||.+-+....+-+ +.+++-++.++++|..+. .. ++-. ...++.+.++.+.+.+.|.+.|=|.|-.--+.+.
T Consensus 110 vd~irif~~lnd~---~n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~ 183 (448)
T PRK12331 110 IDIIRIFDALNDV---RNLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADSICIKDMAGILTPY 183 (448)
T ss_pred CCEEEEEEecCcH---HHHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHH
Confidence 6666666554444 368888999999996432 11 1101 1333467777888889999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.+++. +. ..++... +. |...-+-..-..++|||+.|=.=-.|+-
T Consensus 184 ~v~~lv~alk~~-~~--~pi~~H~-Hn-------------------------t~GlA~AN~laAieaGad~vD~sv~glg 234 (448)
T PRK12331 184 VAYELVKRIKEA-VT--VPLEVHT-HA-------------------------TSGIAEMTYLKAIEAGADIIDTAISPFA 234 (448)
T ss_pred HHHHHHHHHHHh-cC--CeEEEEe-cC-------------------------CCCcHHHHHHHHHHcCCCEEEeeccccC
Confidence 999999999874 22 1244432 11 1233366777789999996533334777
Q ss_pred cCCCCccHHHHHHHHhccCCC
Q 026320 162 KHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~~ 182 (240)
...||..++.+-..++..|.+
T Consensus 235 ~gaGN~~tE~lv~~L~~~g~~ 255 (448)
T PRK12331 235 GGTSQPATESMVAALQDLGYD 255 (448)
T ss_pred CCcCCHhHHHHHHHHHhcCCC
Confidence 789999888777777665543
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.55 Score=41.48 Aligned_cols=117 Identities=15% Similarity=0.230 Sum_probs=66.6
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCc
Q 026320 34 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSD 113 (240)
Q Consensus 34 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~ 113 (240)
||.++.|- -.++-. -+.++++.||+.|+.+.=.++|+. |.+...+++..+.. --+-+|..
T Consensus 41 GVt~SGGE---Pllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~D~------~l~DiK~~------- 100 (213)
T PRK10076 41 GVTLSGGE---VLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLCDE------VLFDLKIM------- 100 (213)
T ss_pred EEEEeCch---HHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhcCE------EEEeeccC-------
Confidence 67777673 222222 468899999999999999999986 44555555443321 12333321
Q ss_pred cccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-----ccccCCCCccHHHHHHHHhccCCCce
Q 026320 114 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----DVCKHADSLRADIIAKVIGRLGLEKT 184 (240)
Q Consensus 114 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~~g~~r~d~v~~i~~~~~~~~l 184 (240)
|+..-..++ -.+.+.+++.++.-.++|.+ +|-| |+.|+..+++ .+.++++.++++++
T Consensus 101 -d~~~~~~~t--------G~~~~~il~nl~~l~~~g~~---v~iR~~vIPg~nd~~e~i~--~ia~~l~~l~~~~~ 162 (213)
T PRK10076 101 -DATQARDVV--------KMNLPRVLENLRLLVSEGVN---VIPRLPLIPGFTLSRENMQ--QALDVLIPLGIKQI 162 (213)
T ss_pred -CHHHHHHHH--------CCCHHHHHHHHHHHHhCCCc---EEEEEEEECCCCCCHHHHH--HHHHHHHHcCCceE
Confidence 111111111 02457788889999999986 3446 5555544432 24445555565533
|
|
| >COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.52 Score=43.33 Aligned_cols=58 Identities=26% Similarity=0.443 Sum_probs=45.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHcCCccccee
Q 026320 43 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 43 ~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.|.|+-.+ -+..+=+..+|++|||-||+|-.- ++-+.++|..+++...+.|+..-|-+
T Consensus 10 YEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmC 74 (287)
T COG3623 10 YEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMC 74 (287)
T ss_pred ehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchh
Confidence 36666543 356677788899999999999653 58899999999999999998866643
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.84 Score=46.27 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.+++.+.+.|.+.|-|.+..-++ +...+.|+.+++.|+.|. ..+-.- . +|.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t---~------------~p~------- 150 (592)
T PRK09282 97 VVEKFVEKAAENGIDIFRIFDALNDV--RNMEVAIKAAKKAGAHVQ--GTISYT---T------------SPV------- 150 (592)
T ss_pred hhHHHHHHHHHCCCCEEEEEEecChH--HHHHHHHHHHHHcCCEEE--EEEEec---c------------CCC-------
Confidence 47889999999999999999888776 445678999999998754 344110 0 111
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I-----~i~Dt~G~~~P~~~~~lv~~l 192 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSI-----CIKDMAGLLTPYAAYELVKAL 192 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCcCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 478999999999888888654
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.97 Score=44.88 Aligned_cols=124 Identities=19% Similarity=0.183 Sum_probs=91.1
Q ss_pred HHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cce
Q 026320 23 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KPK 100 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~E 100 (240)
+.+-++.++++|..|..+ .|.+...+++.+.++++.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++ +.- ...
T Consensus 122 ~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-~~~~~~v~ 198 (513)
T PRK00915 122 AVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRER-VPNIDKAI 198 (513)
T ss_pred HHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHh-CCCcccce
Confidence 478899999999977644 223334445578888899999999999999999999999999999999874 210 013
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
+++.+ -.|....+-.....++|||++ |++- |+=+..||...+.+-..+.
T Consensus 199 l~~H~--------------------------HND~GlAvANslaAv~aGa~~--Vd~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 199 ISVHC--------------------------HNDLGLAVANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred EEEEe--------------------------cCCCCHHHHHHHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 44432 123344577778889999996 4775 8878899988777665553
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=92.73 E-value=4.4 Score=36.79 Aligned_cols=111 Identities=17% Similarity=0.163 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHc-CCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQV-GFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~l-GF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+. |.+.|=+.-.| ..|+.++|.++++.+.+. +...+.+-.+ + ..
T Consensus 22 ~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~---~~~~~~viag---v--~~-------------- 79 (288)
T cd00954 22 VLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA---AKGKVTLIAH---V--GS-------------- 79 (288)
T ss_pred HHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH---hCCCCeEEec---c--CC--------------
Confidence 678889999888 99998776543 589999999999988873 1111111111 1 00
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecC
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 189 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~-~~~~lifEAP 189 (240)
.+.++.++.++..-++||+.||+=.--.+...-+---+-..+|++.. ++.=+++-.|
T Consensus 80 ----~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 80 ----LNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred ----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 14688899999999999999997554222211111122334445555 4555555555
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.63 E-value=1.4 Score=40.49 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCc-----hHHHHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AFKEYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVR 88 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-----~~~~yl~~~k~lGF~-~IEISdGti~l~~-------~~r~~lI~ 88 (240)
.+++-+++++++|..+..+- |-+..-+++ -++++++.+.+.|.+ .|=+.|-.--..+ ++-.++++
T Consensus 116 ~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~ 193 (279)
T cd07947 116 KYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIY 193 (279)
T ss_pred HHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHH
Confidence 46778899999998655321 323333221 456666777779999 6888887764444 45568888
Q ss_pred HHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCC
Q 026320 89 LVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHAD 165 (240)
Q Consensus 89 ~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g 165 (240)
.+++. ++ +-.+++..+ + .|...-+..+...++|||++ +++- |+=+..|
T Consensus 194 ~l~~~~~~-p~~~l~~H~-H-------------------------n~~Gla~AN~laA~~aG~~~--vd~sv~GlGe~aG 244 (279)
T cd07947 194 GLRKDCGV-PSENLEWHG-H-------------------------NDFYKAVANAVAAWLYGASW--VNCTLLGIGERTG 244 (279)
T ss_pred HHHHhcCC-CCceEEEEe-c-------------------------CCCChHHHHHHHHHHhCCCE--EEEeccccccccc
Confidence 88763 21 111344433 1 13345577888889999997 5554 8888999
Q ss_pred CccHHHHHHHHhcc
Q 026320 166 SLRADIIAKVIGRL 179 (240)
Q Consensus 166 ~~r~d~v~~i~~~~ 179 (240)
|..++.+-..+..+
T Consensus 245 N~~tE~lv~~l~~~ 258 (279)
T cd07947 245 NCPLEAMVIEYAQL 258 (279)
T ss_pred chhHHHHHHHHHHh
Confidence 99988877666554
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.1 Score=42.71 Aligned_cols=100 Identities=7% Similarity=0.004 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEecCCc--------ccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS--------LEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt--------i~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+=++.+.+.|.+.|-+.-.+ +..+.++= .++|+.+++.|++|.--+..-|+. .++
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~-----p~~------- 191 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGC-----PIE------- 191 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecC-----Ccc-------
Confidence 456778889999999887332 23344433 369999999999874333322211 111
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 192 --------~r~~~~~l~~~~~~~~~~Gad~I~-----l~DT~G~a~P~~v~~lv~~l 235 (347)
T PLN02746 192 --------GPVPPSKVAYVAKELYDMGCYEIS-----LGDTIGVGTPGTVVPMLEAV 235 (347)
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCEEE-----ecCCcCCcCHHHHHHHHHHH
Confidence 112689999999999999999874 67888888887777777554
|
|
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=92.49 E-value=2.8 Score=36.94 Aligned_cols=143 Identities=14% Similarity=0.263 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++.. .+.-. . ... ..|+
T Consensus 11 ~~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~-h~p~~-~-nl~-s~d~---------- 76 (273)
T smart00518 11 GLYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSV-HAPYL-I-NLA-SPDK---------- 76 (273)
T ss_pred cHhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEE-ECCce-e-cCC-CCCH----------
Confidence 567788999999999999986554 46778888888999999987432 11100 0 000 1111
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHH-------HHHHHHhccCCCceEEec-C--------C
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRAD-------IIAKVIGRLGLEKTMFEA-T--------N 190 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d-------~v~~i~~~~~~~~lifEA-P--------~ 190 (240)
.....+.+.+.+.++..-+.||..|.+-+ |.+.. .-+++ .+.++++.-.--+|.+|. | .
T Consensus 77 --~~r~~~~~~l~~~i~~A~~lGa~~vv~h~-g~~~~--~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~ 151 (273)
T smart00518 77 --EKVEKSIERLIDEIKRCEELGIKALVFHP-GSYLK--QSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGST 151 (273)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCCCEEEEcc-ccccC--CCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCC
Confidence 01122345566666666678999999854 32321 11233 333343320113467785 2 3
Q ss_pred chhHHHHHHHhC--CCcccccCCCCc
Q 026320 191 PRTSEWFIRRYG--PKVNLFVDHSQV 214 (240)
Q Consensus 191 k~qQ~~~I~~fG--~~VNLgI~~~dV 214 (240)
+.+-..+++..+ |++.+-+|+.+.
T Consensus 152 ~~~~~~ll~~v~~~~~~g~~lD~gH~ 177 (273)
T smart00518 152 FEDLKEIIDLIKELDRIGVCIDTCHI 177 (273)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEccch
Confidence 345778888887 467665655554
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.5 Score=40.63 Aligned_cols=124 Identities=19% Similarity=0.258 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~l~~~~r~~l 86 (240)
+.+..--++++..++++.- .||-+ +..+.+.++...+.|.-.|-|-|.+. -+|.++..+-
T Consensus 60 e~~~~~~~I~~~~~iPviaD~d~GyG~------~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~k 133 (285)
T TIGR02317 60 EVAEDARRITRVTDLPLLVDADTGFGE------AFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDK 133 (285)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHH
Confidence 3344444556677887774 24543 12455667778899999999998653 3688888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|+.+++.-- -++|-+- ..+ |. + + ....++.|+++++..+||||.|.+|+-
T Consensus 134 I~Aa~~a~~--~~d~~Ii---ART----Da-~--------~----~~g~deAI~Ra~ay~~AGAD~vfi~g~-------- 183 (285)
T TIGR02317 134 IAAAVDAKR--DEDFVII---ART----DA-R--------A----VEGLDAAIERAKAYVEAGADMIFPEAL-------- 183 (285)
T ss_pred HHHHHHhcc--CCCEEEE---EEc----Cc-c--------c----ccCHHHHHHHHHHHHHcCCCEEEeCCC--------
Confidence 888887522 1344441 111 11 0 0 124789999999999999999999972
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
-..+.++++.+.++
T Consensus 184 ~~~e~i~~~~~~i~ 197 (285)
T TIGR02317 184 TSLEEFRQFAKAVK 197 (285)
T ss_pred CCHHHHHHHHHhcC
Confidence 13566777777765
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=41.86 Aligned_cols=100 Identities=21% Similarity=0.312 Sum_probs=67.6
Q ss_pred ccChhHHHHHHHHHHhC-----Cceec--CC---cH------------HHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 026320 17 LMPKPFIEEVVKRAHQH-----DVYVS--TG---DW------------AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~-----gV~v~--~G---tl------------~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 74 (240)
-++.+.+++.|+-.+++ ||.+. +. .. .++++..+. .++++++.+-+.+.+.|-.+-|
T Consensus 44 ~~~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~G 122 (330)
T PF03060_consen 44 GLTPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGV-PFEEQLDVALEAKPDVVSFGFG 122 (330)
T ss_dssp TSSHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT--SHHHHHHHHHHS--SEEEEESS
T ss_pred ccChHHHHHHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCc-ccccccccccccceEEEEeecc
Confidence 45667899999888886 55333 22 22 345555552 2678888888888889999988
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 75 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 75 ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
.-+ .++|+++++.|.++++-++- ++.++..+++|||.|+
T Consensus 123 ~p~------~~~i~~l~~~gi~v~~~v~s-----------------------------------~~~A~~a~~~G~D~iv 161 (330)
T PF03060_consen 123 LPP------PEVIERLHAAGIKVIPQVTS-----------------------------------VREARKAAKAGADAIV 161 (330)
T ss_dssp SC-------HHHHHHHHHTT-EEEEEESS-----------------------------------HHHHHHHHHTT-SEEE
T ss_pred cch------HHHHHHHHHcCCccccccCC-----------------------------------HHHHHHhhhcCCCEEE
Confidence 532 35889999999887763322 6778888999999999
Q ss_pred Eecc
Q 026320 155 IDSD 158 (240)
Q Consensus 155 iEar 158 (240)
+|+.
T Consensus 162 ~qG~ 165 (330)
T PF03060_consen 162 AQGP 165 (330)
T ss_dssp EE-T
T ss_pred Eecc
Confidence 9985
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=92.41 E-value=3 Score=38.52 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
..+.++++++.+.|.+.|=|.-.| ..|+.++|.++++.+.+. +=++..=+|+ +
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv----~------------------- 85 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGA----T------------------- 85 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEe----c-------------------
Confidence 378899999999999999875443 489999999999998873 1011001122 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc-CCCceEEecC
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL-GLEKTMFEAT 189 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~-~~~~lifEAP 189 (240)
..++++.+++++..-++|||.|++=.--.+....+---+-..+|++.. ++.=+++-.|
T Consensus 86 ----~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P 144 (309)
T cd00952 86 ----TLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANP 144 (309)
T ss_pred ----cCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCc
Confidence 114688899999999999999999874222211111122233444445 2555555555
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.1 Score=40.78 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=45.4
Q ss_pred cccEEEecCc--------cccccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 4 FVDGLKFSGG--------SHSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 4 yID~lKfg~G--------Ts~l~p~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
|.|++=+-.| .+....++.+.+.++-.++. ++++.- .. +.+...++.+.+.+.|.|.|.|+
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHHHHcCCCEEEEE
Confidence 4566655444 45667778899999999875 665552 21 11245677888899999999999
Q ss_pred CCcc
Q 026320 73 VGSL 76 (240)
Q Consensus 73 dGti 76 (240)
+++-
T Consensus 190 nt~~ 193 (300)
T TIGR01037 190 NTLR 193 (300)
T ss_pred ccCC
Confidence 7654
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.4 Score=44.60 Aligned_cols=142 Identities=11% Similarity=0.119 Sum_probs=93.4
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
||.+-+....+ +.+.+++-++.+|++|..+... |. +=...++.+-++.+.+.+.|.+.|-|.|-.--+.+.
T Consensus 105 vd~irif~~ln---d~~n~~~~i~~ak~~G~~v~~~i~~t~---~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~ 178 (582)
T TIGR01108 105 MDVFRIFDALN---DPRNLQAAIQAAKKHGAHAQGTISYTT---SPVHTLETYLDLAEELLEMGVDSICIKDMAGILTPK 178 (582)
T ss_pred CCEEEEEEecC---cHHHHHHHHHHHHHcCCEEEEEEEecc---CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHH
Confidence 45554443333 2357888888999888866532 11 001222456666777788999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
+-.++|+.+++. +. ..++..+ +. |...-+-.....++|||+.|=.=-.|+=
T Consensus 179 ~v~~lv~~lk~~-~~--~pi~~H~-Hn-------------------------t~Gla~An~laAveaGa~~vd~ai~GlG 229 (582)
T TIGR01108 179 AAYELVSALKKR-FG--LPVHLHS-HA-------------------------TTGMAEMALLKAIEAGADGIDTAISSMS 229 (582)
T ss_pred HHHHHHHHHHHh-CC--CceEEEe-cC-------------------------CCCcHHHHHHHHHHhCCCEEEecccccc
Confidence 999999999874 11 1244432 11 2233366777789999996544335888
Q ss_pred cCCCCccHHHHHHHHhccCC
Q 026320 162 KHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~ 181 (240)
...||...+.+-..++..+.
T Consensus 230 ~~tGn~~le~vv~~L~~~g~ 249 (582)
T TIGR01108 230 GGTSHPPTETMVAALRGTGY 249 (582)
T ss_pred ccccChhHHHHHHHHHhcCC
Confidence 88899887776666665553
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.7 Score=43.46 Aligned_cols=144 Identities=11% Similarity=0.068 Sum_probs=98.9
Q ss_pred cEEEecCccccccChh-----------HHHHHHHHHHhCCce-ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 6 DGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~-----------~l~eKi~l~~~~gV~-v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
|.+-+-..+|-++-+. .+.+-|+.++++|.. +..|. |.+..-+++.+.++++.+.+.|-+.|-+.|
T Consensus 183 ~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~D 260 (503)
T PLN03228 183 PRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIAD 260 (503)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEec
Confidence 3455555565555332 247788899999974 54443 445555556778899999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHcCCcc--cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLKA--KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~v--~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
-.--+.+.+-.++|+.+++. +.. ...+++.+ -.|...-+-..-..++|||+
T Consensus 261 TvG~~tP~~v~~lV~~l~~~-~~~~~~i~I~~H~--------------------------HND~GlAvANslaAi~aGa~ 313 (503)
T PLN03228 261 TVGINMPHEFGELVTYVKAN-TPGIDDIVFSVHC--------------------------HNDLGLATANTIAGICAGAR 313 (503)
T ss_pred CCCCCCHHHHHHHHHHHHHH-hccccCceeEecc--------------------------cCCcChHHHHHHHHHHhCCC
Confidence 99999999999999999873 100 01123321 12334446677778999999
Q ss_pred EEEEeccccccCCCCccHHHHHHHHhc
Q 026320 152 MIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 152 ~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
+|=+==-|+=+..||...+.+-..+..
T Consensus 314 ~Vd~Tv~GiGERaGNa~lEevv~~L~~ 340 (503)
T PLN03228 314 QVEVTINGIGERSGNASLEEVVMALKC 340 (503)
T ss_pred EEEEeccccccccCCccHHHHHHHHHh
Confidence 985533488888999888776655543
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=92.14 E-value=4.9 Score=37.32 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLL 84 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~l~~~~r~ 84 (240)
+.+..--++++.-++++.- .||-+.. .+.+-++...+.|.-.|-|-|++. -+|.++..
T Consensus 62 e~~~~~~~I~~~~~lPv~aD~d~GyG~~~------~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~ 135 (290)
T TIGR02321 62 THLEMMRAIASTVSIPLIADIDTGFGNAV------NVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQ 135 (290)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHH
Confidence 3444555666777787773 2343221 244556666799999999988752 25888888
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
+-|+.+++. +--++|-+- ..+ |. + |. ....++.|++++...+||||.|.+|+.
T Consensus 136 ~kI~Aa~~a--~~~~d~~I~---ART----Da-~--------~~---~~g~deAI~Ra~aY~eAGAD~ifv~~~------ 188 (290)
T TIGR02321 136 GKIAAATAA--RADRDFVVI---ARV----EA-L--------IA---GLGQQEAVRRGQAYEEAGADAILIHSR------ 188 (290)
T ss_pred HHHHHHHHh--CCCCCEEEE---EEe----cc-c--------cc---cCCHHHHHHHHHHHHHcCCCEEEecCC------
Confidence 888888775 222445442 111 11 0 11 113589999999999999999999972
Q ss_pred CCccHHHHHHHHhccCC-Cce-EEec
Q 026320 165 DSLRADIIAKVIGRLGL-EKT-MFEA 188 (240)
Q Consensus 165 g~~r~d~v~~i~~~~~~-~~l-ifEA 188 (240)
....+.+.++.+.++. -.+ +.+.
T Consensus 189 -~~~~~ei~~~~~~~~~p~pv~~~~~ 213 (290)
T TIGR02321 189 -QKTPDEILAFVKSWPGKVPLVLVPT 213 (290)
T ss_pred -CCCHHHHHHHHHhcCCCCCeEEecC
Confidence 2458889999988873 234 5554
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.13 E-value=2.4 Score=38.35 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt----i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+.++++++-+.|.+.|=+. || ..|+.++|.++++.+.+. | ..|+ +|+ .
T Consensus 20 ~~~~~i~~l~~~Gv~Gi~~~-GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi--~gv---------~------------ 75 (285)
T TIGR00674 20 ALEKLIDFQIENGTDAIVVV-GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVI--AGT---------G------------ 75 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccCcccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC---------C------------
Confidence 67888999999999999873 33 589999999999998884 1 1111 122 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC---C-CccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA---D-SLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~---g-~~r~d~v~~i~ 176 (240)
..+.++.+++++..-++||+.|++=.- -+|+.- | .+..+++.+++
T Consensus 76 ------~~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~ 149 (285)
T TIGR00674 76 ------SNATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLA 149 (285)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHH
Confidence 114688899999999999999998752 135432 3 56677788776
Q ss_pred hccCCCceEE--e-cCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCCC
Q 026320 177 GRLGLEKTMF--E-ATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 177 ~~~~~~~lif--E-AP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G~ 227 (240)
+ .+ +++- + .++......+++++++++.+....+ -+-+++++.|.-|-
T Consensus 150 ~-~~--~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G~d-~~~~~~~~~G~~G~ 199 (285)
T TIGR00674 150 E-EP--NIVAIKEATGNLERISEIKAIAPDDFVVLSGDD-ALTLPMMALGGKGV 199 (285)
T ss_pred c-CC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEECch-HHHHHHHHcCCCEE
Confidence 3 33 4433 3 3445566667788877776654433 45568888765443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.88 Score=46.28 Aligned_cols=136 Identities=15% Similarity=0.067 Sum_probs=88.2
Q ss_pred cChhHHHHHHHHHHhCCceecC-C---cHHHHH-------HHh----------------CCchHHHHHHHHHHcCCCEEE
Q 026320 18 MPKPFIEEVVKRAHQHDVYVST-G---DWAEHL-------IRN----------------GPSAFKEYVEDCKQVGFDTIE 70 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~-G---tl~E~a-------~~q----------------g~~~~~~yl~~~k~lGF~~IE 70 (240)
||.+.++.-++++++|||.+.- . +++..+ -.. .++.+.++.+.+.++|.+.|=
T Consensus 93 ~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~ 172 (596)
T PRK14042 93 YADDVVRAFVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIA 172 (596)
T ss_pred CChHHHHHHHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 5666777777777777774442 2 232221 111 123455556666778999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 71 LNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 71 ISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
|.|-.--+.+.+-.++++.++++ +. -.++... +. |...-+-.....++|||
T Consensus 173 IkDtaG~l~P~~v~~lv~alk~~-~~--ipi~~H~-Hn-------------------------t~Gla~an~laAieaGa 223 (596)
T PRK14042 173 IKDMAGLLTPTVTVELYAGLKQA-TG--LPVHLHS-HS-------------------------TSGLASICHYEAVLAGC 223 (596)
T ss_pred eCCcccCCCHHHHHHHHHHHHhh-cC--CEEEEEe-CC-------------------------CCCcHHHHHHHHHHhCC
Confidence 99999999999999999999874 21 2244432 11 12333566677799999
Q ss_pred cEEEEeccccccCCCCccHHHHHHHHhccCCC
Q 026320 151 DMIMIDSDDVCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 151 ~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
+.|=.=-.|+-...||.-++.+-..++..+.+
T Consensus 224 d~iD~ai~glGg~tGn~~tE~lv~~L~~~g~~ 255 (596)
T PRK14042 224 NHIDTAISSFSGGASHPPTEALVAALTDTPYD 255 (596)
T ss_pred CEEEeccccccCCCCcHhHHHHHHHHHhcCCC
Confidence 96544445887778998888777777666643
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=92.08 E-value=2 Score=40.11 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~l~~~~r~~l 86 (240)
+.+..--++++..++++.- .||-+.. .+.+.++...+.|.-.|-|-|.+. -+|.++..+-
T Consensus 64 e~~~~~~~I~~~~~lPv~aD~dtGyG~~~------~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~k 137 (294)
T TIGR02319 64 EQAINAKNIVLAVDVPVIMDADAGYGNAM------SVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGK 137 (294)
T ss_pred HHHHHHHHHHhccCCCEEEECCCCCCCcH------HHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHH
Confidence 3444445666777887773 1342211 244556777899999999998764 2688888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|+.+++.-= -++|-+- ..+ |. + . ....++.|+++++..+||||.|.+|+-
T Consensus 138 I~Aa~~A~~--~~d~~I~---ART----Da-~----~--------~~g~deaI~Ra~aY~eAGAD~ifi~~~-------- 187 (294)
T TIGR02319 138 IEAAVEARE--DEDFTII---ART----DA-R----E--------SFGLDEAIRRSREYVAAGADCIFLEAM-------- 187 (294)
T ss_pred HHHHHHhcc--CCCeEEE---EEe----cc-c----c--------cCCHHHHHHHHHHHHHhCCCEEEecCC--------
Confidence 888776411 1445442 111 11 0 0 124789999999999999999999962
Q ss_pred ccHHHHHHHHhccCC
Q 026320 167 LRADIIAKVIGRLGL 181 (240)
Q Consensus 167 ~r~d~v~~i~~~~~~ 181 (240)
...+.+.++.+.++.
T Consensus 188 ~~~~ei~~~~~~~~~ 202 (294)
T TIGR02319 188 LDVEEMKRVRDEIDA 202 (294)
T ss_pred CCHHHHHHHHHhcCC
Confidence 246778888887763
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=92.08 E-value=1.4 Score=43.56 Aligned_cols=96 Identities=18% Similarity=0.290 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.|++.+.+.|.+.|-|.+..-++. .-.+.|+.+++.|+.|. ..+-. ..+ | .
T Consensus 96 vv~~fv~~A~~~Gvd~irif~~lnd~~--n~~~~i~~ak~~G~~v~--~~i~~---t~~------------p-------~ 149 (467)
T PRK14041 96 VVELFVKKVAEYGLDIIRIFDALNDIR--NLEKSIEVAKKHGAHVQ--GAISY---TVS------------P-------V 149 (467)
T ss_pred hhHHHHHHHHHCCcCEEEEEEeCCHHH--HHHHHHHHHHHCCCEEE--EEEEe---ccC------------C-------C
Confidence 588899999999999999998777753 44568999999998654 33311 111 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+++.+++.+++-.++||+.|- |.|..|-..+..+.+++..+
T Consensus 150 ~t~e~~~~~a~~l~~~Gad~I~-----i~Dt~G~l~P~~v~~Lv~~l 191 (467)
T PRK14041 150 HTLEYYLEFARELVDMGVDSIC-----IKDMAGLLTPKRAYELVKAL 191 (467)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----ECCccCCcCHHHHHHHHHHH
Confidence 1578899999999999999764 67888888888887777654
|
|
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.1 Score=39.88 Aligned_cols=145 Identities=15% Similarity=0.303 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti------~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+++-++.++++||+.||++-+.. ..+.++..++.+.++++ |+.+.. .+.-. ..-. ..++
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~-~~~~~-~~~~--~~~~--------- 77 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSV-HAPYL-INLA--SPDK--------- 77 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEE-EcCce-eccC--CCCH---------
Confidence 788999999999999999975433 12457777777777787 444322 11100 0000 0010
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc--CCCCccH---HHHHHHHh---ccCCCceEEec---------
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK--HADSLRA---DIIAKVIG---RLGLEKTMFEA--------- 188 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d--~~g~~r~---d~v~~i~~---~~~~~~lifEA--------- 188 (240)
.......+.+.+.++..-+.||..|++-.- .+. ....... +.+.++++ ..|+ +|-+|-
T Consensus 78 ---~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi-~l~lEn~~~~~~~~~ 152 (279)
T cd00019 78 ---EKREKSIERLKDEIERCEELGIRLLVFHPG-SYLGQSKEEGLKRVIEALNELIDKAETKGV-VIALETMAGQGNEIG 152 (279)
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCEEEECCC-CCCCCCHHHHHHHHHHHHHHHHHhccCCCC-EEEEeCCCCCCCCCC
Confidence 011234566666677777889999888432 211 1111112 33444443 2333 566664
Q ss_pred CCchhHHHHHHHhC--CCcccccCCCCch
Q 026320 189 TNPRTSEWFIRRYG--PKVNLFVDHSQVM 215 (240)
Q Consensus 189 P~k~qQ~~~I~~fG--~~VNLgI~~~dVl 215 (240)
+...+-..+|+..| |+|.+-.|+.+..
T Consensus 153 ~t~~~~~~li~~v~~~~~~g~~lD~~h~~ 181 (279)
T cd00019 153 SSFEELKEIIDLIKEKPRVGVCIDTCHIF 181 (279)
T ss_pred CCHHHHHHHHHhcCCCCCeEEEEEhhhHH
Confidence 22345577999997 7776655555543
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.6 Score=43.24 Aligned_cols=124 Identities=18% Similarity=0.197 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.+.+-++.++++|..+..+ +|-+...+++.+.++++.+.+.|-+.|-+.|-.--+.+.+-.++|+.+++. +. ..+
T Consensus 115 ~~~~~v~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~-~~--v~l 189 (488)
T PRK09389 115 TAVEAVEYAKDHGLIVELS--GEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSEL-VK--GPV 189 (488)
T ss_pred HHHHHHHHHHHCCCEEEEE--EeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh-cC--CeE
Confidence 4566678999999865542 133444445567778888899999999999999999999999999999874 22 224
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
++.+ . .|...-+-.+...++|||++ ||+- |+=+..||...+.+-..+..
T Consensus 190 ~~H~-H-------------------------ND~GlAvANalaAv~aGa~~--Vd~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 190 SIHC-H-------------------------NDFGLAVANTLAALAAGADQ--VHVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred EEEe-c-------------------------CCccHHHHHHHHHHHcCCCE--EEEEcccccccccCccHHHHHHHHHh
Confidence 4432 1 12344467788889999996 6775 88788999888877665543
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.5 Score=40.88 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.+++. +...++..+ +.
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~---~~~pi~~H~-Hn------------------------- 215 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM---TNLPLIVHT-HA------------------------- 215 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc---cCCeEEEEe-CC-------------------------
Confidence 5566677788999999999999999999999999999873 123355533 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
|....+...-..++|||+.|=.=-.|+-...||..++.+-..++..|.
T Consensus 216 t~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~~L~~~g~ 263 (468)
T PRK12581 216 TSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYLALKEAGY 263 (468)
T ss_pred CCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHHHHHhcCC
Confidence 223346677778999999653333478778899888877767665553
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.81 Score=42.54 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCceec------CCc-HHHH-HHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVS------TGD-WAEH-LIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~------~Gt-l~E~-a~~qg~~~~~~yl~~~k~lGF-~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
..++.++.+++.++.+. ||. +||. |++-|. ... +++|. |+|=|.|.-+.+-- ...+.|+++++
T Consensus 112 ~T~~~V~~~~~~~~~i~~TRKT~PglR~leKyAV~~GG-G~n------HR~gLsDavliKDNHia~~g-~i~~Av~~aR~ 183 (280)
T COG0157 112 ATARMVEALRGTNVRIADTRKTTPGLRLLEKYAVRAGG-GDN------HRFGLSDAVLIKDNHIAAAG-SITEAVRRARA 183 (280)
T ss_pred HHHHHHHHhhccCcEEEeccCCCccHHHHHHHHHHhcC-Ccc------ccCCCcceEEehhhHHHHhc-cHHHHHHHHHH
Confidence 35677888999998554 574 6774 555441 222 45554 78999999888877 55689999988
Q ss_pred c-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHH
Q 026320 93 A-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI 171 (240)
Q Consensus 93 ~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~ 171 (240)
. ++.++-|+-+. + .+++.+.++||||.||. .|+..+.
T Consensus 184 ~~~~~~kIEVEve-----------------------------s----le~~~eAl~agaDiImL---------DNm~~e~ 221 (280)
T COG0157 184 AAPFTKKIEVEVE-----------------------------S----LEEAEEALEAGADIIML---------DNMSPEE 221 (280)
T ss_pred hCCCCceEEEEcC-----------------------------C----HHHHHHHHHcCCCEEEe---------cCCCHHH
Confidence 6 66666666661 1 67888899999999999 4888999
Q ss_pred HHHHHhccC-CCceEEecCC
Q 026320 172 IAKVIGRLG-LEKTMFEATN 190 (240)
Q Consensus 172 v~~i~~~~~-~~~lifEAP~ 190 (240)
+.+.++.++ ..+++-||.-
T Consensus 222 ~~~av~~l~~~~~~~lEaSG 241 (280)
T COG0157 222 LKEAVKLLGLAGRALLEASG 241 (280)
T ss_pred HHHHHHHhccCCceEEEEeC
Confidence 999988766 6689999983
|
|
| >TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal | Back alignment and domain information |
|---|
Probab=91.60 E-value=5.8 Score=35.83 Aligned_cols=84 Identities=21% Similarity=0.368 Sum_probs=53.6
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCc-ee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV-~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--- 77 (240)
+..+.|.+|-..+.+ .+.+.++.++++|+ .+ .+ |+++ +++++.+++.|++.|-||=.+.+
T Consensus 57 i~~I~~tGGEPll~~--~l~~iv~~l~~~g~~~v~i~TNG~ll-----------~~~~~~l~~~g~~~v~iSld~~~~~~ 123 (302)
T TIGR02668 57 VRKVKITGGEPLLRK--DLIEIIRRIKDYGIKDVSMTTNGILL-----------EKLAKKLKEAGLDRVNVSLDTLDPEK 123 (302)
T ss_pred CCEEEEECccccccc--CHHHHHHHHHhCCCceEEEEcCchHH-----------HHHHHHHHHCCCCEEEEEecCCCHHH
Confidence 455677777766655 36677887777765 33 34 5443 34555667788888888765542
Q ss_pred -------CChhHHHHHHHHHHHcCCc-cccee
Q 026320 78 -------IPEETLLRYVRLVKSAGLK-AKPKF 101 (240)
Q Consensus 78 -------l~~~~r~~lI~~~~~~G~~-v~~E~ 101 (240)
-+.+...+-|+.+++.|+. ++-.+
T Consensus 124 ~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~ 155 (302)
T TIGR02668 124 YKKITGRGALDRVIEGIESAVDAGLTPVKLNM 155 (302)
T ss_pred hhhccCCCcHHHHHHHHHHHHHcCCCcEEEEE
Confidence 2345667788888888875 44333
|
This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666). |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.6 Score=37.77 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
..-++.+..++.|++.+-|.|=+-... ...-..+|+++++.=. +| +-+ +. .
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~--~p-v~~--~G------------g----------- 81 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG--IP-VQV--GG------------G----------- 81 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC--CC-EEE--eC------------C-----------
Confidence 455666777789999999997654332 4444678888877310 01 112 00 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifE 187 (240)
..+ .+.+++.+++||+.|++=.. ... ..+.+.++++.++.+++++=
T Consensus 82 I~~----~e~~~~~~~~Gad~vvigs~-~l~-----dp~~~~~i~~~~g~~~i~~s 127 (234)
T cd04732 82 IRS----LEDIERLLDLGVSRVIIGTA-AVK-----NPELVKELLKEYGGERIVVG 127 (234)
T ss_pred cCC----HHHHHHHHHcCCCEEEECch-HHh-----ChHHHHHHHHHcCCceEEEE
Confidence 112 56778888899999998433 332 26677777777776666553
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.45 E-value=11 Score=34.22 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=86.7
Q ss_pred HHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 25 EVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 25 eKi~l~~~~--gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+-++-.+++ ++++. - ++..-.+.. .+++|++.|++.|.+.|=|=| +|.++..++++.++++|+.+.+=+
T Consensus 76 ~~v~~ir~~~~~~plv-~m~Y~Npi~~~---G~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 76 ELLKKVRQKHPNIPIG-LLTYYNLIFRK---GVEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred HHHHHHHhcCCCCCEE-EEEeccHHhhh---hHHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEEEEE
Confidence 334444433 55544 3 555666666 489999999999999988874 677888999999999988765422
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH---HHHhc
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA---KVIGR 178 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~---~i~~~ 178 (240)
.- . ++.++++.+.+. ..|--++|. ..|++.....+..++.+ ++-+.
T Consensus 148 ~P---~--------------------------T~~eri~~i~~~-~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~lr~~ 196 (256)
T TIGR00262 148 AP---N--------------------------ADDERLKQIAEK-SQGFVYLVS-RAGVTGARNRAASALNELVKRLKAY 196 (256)
T ss_pred CC---C--------------------------CCHHHHHHHHHh-CCCCEEEEE-CCCCCCCcccCChhHHHHHHHHHhh
Confidence 22 0 123444444442 344555554 23666655455555333 33222
Q ss_pred cCCCceEEecCCc-hhHHHHHHHhCCCc
Q 026320 179 LGLEKTMFEATNP-RTSEWFIRRYGPKV 205 (240)
Q Consensus 179 ~~~~~lifEAP~k-~qQ~~~I~~fG~~V 205 (240)
.+ ..++.+-=-+ ..|..-+..+|.|.
T Consensus 197 ~~-~pi~vgfGI~~~e~~~~~~~~GADg 223 (256)
T TIGR00262 197 SA-KPVLVGFGISKPEQVKQAIDAGADG 223 (256)
T ss_pred cC-CCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 22 2466666554 66777788888873
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.5 Score=37.35 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=67.3
Q ss_pred cccccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 026320 14 SHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 91 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~ 91 (240)
...++++..-.+-++.++++||.+.|| |.-|+.-.. ++|++.|-+==...-= -..+|+.++
T Consensus 77 A~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~-------------~~Ga~~vK~FPa~~~G----G~~yikal~ 139 (201)
T PRK06015 77 SRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMALR-------------EEGYTVLKFFPAEQAG----GAAFLKALS 139 (201)
T ss_pred CCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHH-------------HCCCCEEEECCchhhC----CHHHHHHHH
Confidence 344555567888999999999999998 789987554 6899999885422110 135677665
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC
Q 026320 92 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH 163 (240)
Q Consensus 92 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~ 163 (240)
. ++|.+-.. +...| + .+.+...|+||+..+.. +.-++++
T Consensus 140 ~----plp~~~l~-ptGGV-----------------------~----~~n~~~~l~ag~~~~~g-gs~l~~~ 178 (201)
T PRK06015 140 S----PLAGTFFC-PTGGI-----------------------S----LKNARDYLSLPNVVCVG-GSWVAPK 178 (201)
T ss_pred h----hCCCCcEE-ecCCC-----------------------C----HHHHHHHHhCCCeEEEE-chhhCCc
Confidence 5 45544332 11111 1 46888999999998877 7767654
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.1 Score=43.34 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
-++.+++.+.+.|++.|-|.+-.-++ +.-.+.|+.++++|+.|. +.+-... +|.
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~--~n~~~~i~~ak~~G~~v~--~~i~~t~---------------~p~------- 145 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP--RNLQAAIQAAKKHGAHAQ--GTISYTT---------------SPV------- 145 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH--HHHHHHHHHHHHcCCEEE--EEEEecc---------------CCC-------
Confidence 47889999999999999998777665 445678999999998654 4441100 111
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I-----~i~Dt~G~~~P~~v~~lv~~l 187 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSI-----CIKDMAGILTPKAAYELVSAL 187 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EECCCCCCcCHHHHHHHHHHH
Confidence 158999999999999999976 468999999999888888655
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.5 Score=38.93 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=31.8
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
.+.++++.+....+++||+.|++ ||.||.++.. ...+.+|.+.
T Consensus 184 ~~dq~~~~~~~~ai~~Gad~iVv-GR~I~~a~dP--~~~a~~i~~~ 226 (230)
T PRK00230 184 AGDQKRVMTPAQAIAAGSDYIVV-GRPITQAADP--AAAYEAILAE 226 (230)
T ss_pred cchHHHHhCHHHHHHcCCCEEEE-CCcccCCCCH--HHHHHHHHHH
Confidence 35688888999999999998866 8999988764 3345555443
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.69 Score=42.06 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=58.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+.|.+.|=+.-.| ..|+.++|.++++.+.+. | +.++ .|+ +
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi--~gv-------~-------------- 78 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVI--GNT-------G-------------- 78 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEE--EEC-------C--------------
Confidence 368889999999999999875443 489999999999998773 1 1111 122 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..++.+.++.+++.-++|||.||+-.-
T Consensus 79 ------~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 79 ------SNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 114688899999999999999999764
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.8 Score=40.88 Aligned_cols=95 Identities=21% Similarity=0.239 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~--------l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
..+-++.+.+.|.+.|-+...+-+ .+.++ -.+.|+.+++.|++| +|+..+. .
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v--~~~~ed~---------~----- 137 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV--SVGGEDA---------S----- 137 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEE--EEeecCC---------C-----
Confidence 356688899999999998876532 22222 337899999999874 3444221 0
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.++...++||+.| .++|..|-..+..+.++++.+
T Consensus 138 ----------r~~~~~l~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~v~~lv~~l 180 (365)
T TIGR02660 138 ----------RADPDFLVELAEVAAEAGADRF-----RFADTVGILDPFSTYELVRAL 180 (365)
T ss_pred ----------CCCHHHHHHHHHHHHHcCcCEE-----EEcccCCCCCHHHHHHHHHHH
Confidence 1258899999999999999976 478999999998888887654
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.4 Score=41.86 Aligned_cols=83 Identities=17% Similarity=0.250 Sum_probs=60.6
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHH
Q 026320 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLL 138 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~ 138 (240)
+.+++-|.++|-|-+|+ ..+...|+.+.++|.-|.-.+|..-. .+..++.+-..- .-.+...++
T Consensus 121 rl~~eaGa~aVKlEGg~-----~~~~~~I~~l~~~GIPV~gHiGLtPQ-------s~~~lGGykvqG----r~~~~a~~l 184 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGS-----PSRVTAAKAIVEAGIAVMGHVGLTPQ-------AISVLGGFRPQG----RTAESAVKV 184 (332)
T ss_pred HHHHHhCCcEEEECCCc-----HHHHHHHHHHHHcCCCEEEeecccce-------eehhhcCccccC----CCHHHHHHH
Confidence 34467899999999997 56789999999999999999998532 111121111000 001236789
Q ss_pred HHHHHHHHHcCCcEEEEec
Q 026320 139 IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEa 157 (240)
++.++.--+|||+.|.+|+
T Consensus 185 i~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 185 VETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHcCCcEEEEcC
Confidence 9999999999999999998
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.00 E-value=1.3 Score=39.74 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=43.8
Q ss_pred ccEEEecCccc-------cccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 026320 5 VDGLKFSGGSH-------SLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 5 ID~lKfg~GTs-------~l~p~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 74 (240)
+|++=+-++|- .+..++.+.+.++-.|+. ++++.- ++.. ..+.+.+..+.+.+.|.|.|.++++
T Consensus 125 ~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 125 AKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred CCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 56666655543 244567788999988886 544432 2211 1125777888899999999999987
Q ss_pred cc
Q 026320 75 SL 76 (240)
Q Consensus 75 ti 76 (240)
+.
T Consensus 199 ~~ 200 (289)
T cd02810 199 IS 200 (289)
T ss_pred cC
Confidence 64
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=4.3 Score=41.33 Aligned_cols=126 Identities=10% Similarity=0.081 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhCCcee-----cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 21 PFIEEVVKRAHQHDVYV-----STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v-----~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
+.++.-|+.++++|..+ |+++- + ..++.+.++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +
T Consensus 124 ~~~~~ai~~ak~~G~~~~~~i~yt~~p-~----~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~-~ 197 (593)
T PRK14040 124 RNLETALKAVRKVGAHAQGTLSYTTSP-V----HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKR-V 197 (593)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEeeCC-c----cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh-c
Confidence 45666777777777642 22211 1 112356677777888899999999999989999888999998874 1
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 175 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i 175 (240)
. -.+++.. + .|....+......++|||+.|=.=-.|+=...||...+.+-..
T Consensus 198 ~--~pi~~H~-H-------------------------nt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~ 249 (593)
T PRK14040 198 D--VPLHLHC-H-------------------------ATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVAT 249 (593)
T ss_pred C--CeEEEEE-C-------------------------CCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHH
Confidence 1 2344432 1 1234446777788999999654433488778899888877666
Q ss_pred HhccC
Q 026320 176 IGRLG 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
+...+
T Consensus 250 L~~~~ 254 (593)
T PRK14040 250 LEGTE 254 (593)
T ss_pred HHhcC
Confidence 66544
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=2.2 Score=42.31 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=74.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+-++.|++.+.+.|++.+-|-|..-+++.- ...|+.+++.|..+..=+.... +|.
T Consensus 105 dvv~~fv~~a~~~Gidi~Rifd~lnd~~n~--~~ai~~ak~~G~~~~~~i~yt~-----------------sp~------ 159 (468)
T PRK12581 105 DIVDKFISLSAQNGIDVFRIFDALNDPRNI--QQALRAVKKTGKEAQLCIAYTT-----------------SPV------ 159 (468)
T ss_pred hHHHHHHHHHHHCCCCEEEEcccCCCHHHH--HHHHHHHHHcCCEEEEEEEEEe-----------------CCc------
Confidence 468889999999999999999977755444 4699999999987653222211 111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|.+-+++.++.-.++||+.|- |.|..|-..+..+.++++.+
T Consensus 160 -~t~~y~~~~a~~l~~~Gad~I~-----IkDtaG~l~P~~v~~Lv~al 201 (468)
T PRK12581 160 -HTLNYYLSLVKELVEMGADSIC-----IKDMAGILTPKAAKELVSGI 201 (468)
T ss_pred -CcHHHHHHHHHHHHHcCCCEEE-----ECCCCCCcCHHHHHHHHHHH
Confidence 1578889999999999999775 57888888888888888665
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.3 Score=38.22 Aligned_cols=94 Identities=24% Similarity=0.347 Sum_probs=67.4
Q ss_pred HHHHHHHHHcC----CCEEEecCCcc--------cCCh----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 026320 55 KEYVEDCKQVG----FDTIELNVGSL--------EIPE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 55 ~~yl~~~k~lG----F~~IEISdGti--------~l~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
.+.++.+.+.| ++.|-+....- ..+. +.-.+.|+.+++.|++|. |+..+..
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~~~~~----------- 138 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSAEDAT----------- 138 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EeeecCC-----------
Confidence 44566666677 99999977542 2222 334578899999998754 4442210
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..+++.+.+.+++..++|++.| .+.|..|...++.+.++++.+
T Consensus 139 -------------~~~~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~~l 181 (268)
T cd07940 139 -------------RTDLDFLIEVVEAAIEAGATTI-----NIPDTVGYLTPEEFGELIKKL 181 (268)
T ss_pred -------------CCCHHHHHHHHHHHHHcCCCEE-----EECCCCCCCCHHHHHHHHHHH
Confidence 1158899999999999999876 478999999999999888644
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=90.72 E-value=2.3 Score=36.91 Aligned_cols=126 Identities=13% Similarity=0.131 Sum_probs=76.0
Q ss_pred ChhHHHHHHHHHHhCCceecC-CcH--HHHHHH-----------hCCc--h-----HHHHHHHHHHcCCCEEEecCCccc
Q 026320 19 PKPFIEEVVKRAHQHDVYVST-GDW--AEHLIR-----------NGPS--A-----FKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~-Gtl--~E~a~~-----------qg~~--~-----~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+...+.+-...|.++|+.... +++ ++.+-. ++-+ . ..+.++.|.+.|-+.|.+......
T Consensus 25 ~~~~i~~~a~~~~~~G~~~~~~~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~ 104 (219)
T cd04729 25 SPEIMAAMALAAVQGGAVGIRANGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP 104 (219)
T ss_pred cHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC
Confidence 334567777788889986653 443 443322 1100 1 123789999999999988655444
Q ss_pred CCh-hHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 78 IPE-ETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 78 l~~-~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
.|. ++-.++++.+++.| +.+.. ++ .+++ .+++..++|+++|.+
T Consensus 105 ~p~~~~~~~~i~~~~~~g~~~iiv--~v-----------------------------~t~~----ea~~a~~~G~d~i~~ 149 (219)
T cd04729 105 RPDGETLAELIKRIHEEYNCLLMA--DI-----------------------------STLE----EALNAAKLGFDIIGT 149 (219)
T ss_pred CCCCcCHHHHHHHHHHHhCCeEEE--EC-----------------------------CCHH----HHHHHHHcCCCEEEc
Confidence 455 36668999999987 43332 11 0233 346677899999998
Q ss_pred eccccccCC---CCccHHHHHHHHhcc
Q 026320 156 DSDDVCKHA---DSLRADIIAKVIGRL 179 (240)
Q Consensus 156 Eargi~d~~---g~~r~d~v~~i~~~~ 179 (240)
..+|.+... .....+.+.++.+.+
T Consensus 150 ~~~g~t~~~~~~~~~~~~~l~~i~~~~ 176 (219)
T cd04729 150 TLSGYTEETAKTEDPDFELLKELRKAL 176 (219)
T ss_pred cCccccccccCCCCCCHHHHHHHHHhc
Confidence 877654321 122335566665544
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.72 E-value=1.9 Score=41.32 Aligned_cols=94 Identities=13% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHcCCccc
Q 026320 23 IEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~----~~r~~lI~~~~~~G~~v~ 98 (240)
+.+.|+-.++++|.+..+. ++....++.+.+.+.|.+.|.|+-.|.+-.+ ..+..+++..++.+..|+
T Consensus 120 ~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVI 191 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVI 191 (368)
T ss_pred HHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEE
Confidence 3444455555555543332 3346789999999999999999766554221 145667777776554432
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
- |. +. + .+.+++.+++|||-|++ ++|
T Consensus 192 a--G~------V~----------------------t----~e~A~~l~~aGAD~V~V-G~G 217 (368)
T PRK08649 192 V--GG------CV----------------------T----YTTALHLMRTGAAGVLV-GIG 217 (368)
T ss_pred E--eC------CC----------------------C----HHHHHHHHHcCCCEEEE-CCC
Confidence 1 11 10 2 45677778899999999 663
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=90.66 E-value=2.5 Score=41.85 Aligned_cols=125 Identities=14% Similarity=0.121 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~ 99 (240)
.+.+-+++++++|..+..+ .|.+..-+++.+.++++.+.+.|-+.|-+.|-.--+.+.+-.++|+.++++ +.- ..
T Consensus 118 ~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~-~~~~~~v 194 (494)
T TIGR00973 118 RAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLREN-VPNIDKA 194 (494)
T ss_pred HHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHh-hccccCc
Confidence 4558889999999876654 334444555678888999999999999999999999999999999999874 110 11
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
.+++.+ -.|....+-.....++|||++ ||+- |+=+..||...+.+-..+.
T Consensus 195 ~l~~H~--------------------------HND~GlAvANalaAv~aGa~~--vd~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 195 ILSVHC--------------------------HNDLGLAVANSLAAVQNGARQ--VECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred eEEEEe--------------------------CCCCChHHHHHHHHHHhCCCE--EEEEeecccccccCccHHHHHHHHH
Confidence 244432 223344577788889999995 5775 7778889988776665553
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=90.53 E-value=3 Score=42.37 Aligned_cols=140 Identities=13% Similarity=0.130 Sum_probs=93.0
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 80 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~ 80 (240)
-||.+.+....+-+ +.+++-++.++++|..+... |+-- ...++.+-++.+.+.+.|.+.|=|.|-.--+.+
T Consensus 109 Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P 182 (592)
T PRK09282 109 GIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTP 182 (592)
T ss_pred CCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCH
Confidence 35666665544443 46888888888888866421 1100 122345666677778899999999999999999
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--
Q 026320 81 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-- 158 (240)
Q Consensus 81 ~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-- 158 (240)
.+-.++++.+++. +. ..++... +. |...-+......++|||++ |++-
T Consensus 183 ~~~~~lv~~lk~~-~~--~pi~~H~-Hn-------------------------t~Gla~An~laAv~aGad~--vD~ai~ 231 (592)
T PRK09282 183 YAAYELVKALKEE-VD--LPVQLHS-HC-------------------------TSGLAPMTYLKAVEAGVDI--IDTAIS 231 (592)
T ss_pred HHHHHHHHHHHHh-CC--CeEEEEE-cC-------------------------CCCcHHHHHHHHHHhCCCE--EEeecc
Confidence 9999999999874 22 1244432 11 1233366777789999996 5554
Q ss_pred ccccCCCCccHHHHHHHHhccC
Q 026320 159 DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 159 gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
|+-...||...+.+-..++..+
T Consensus 232 g~g~~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 232 PLAFGTSQPPTESMVAALKGTP 253 (592)
T ss_pred ccCCCcCCHhHHHHHHHHHhCC
Confidence 7777888888776666665544
|
|
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=90.31 E-value=6.8 Score=37.30 Aligned_cols=85 Identities=18% Similarity=0.316 Sum_probs=48.1
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhC-Cce---ecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY---VST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--- 77 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~---v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--- 77 (240)
..+.|.+|--.+.| .+.+.++.+++. |+. +.| |++ +++.++..++.|.+.|-||=.+++
T Consensus 108 ~~I~~tGGEPllr~--dl~eli~~l~~~~gi~~i~itTNG~l-----------L~~~~~~L~~aGld~VnISLDsl~~e~ 174 (373)
T PLN02951 108 DKIRLTGGEPTLRK--DIEDICLQLSSLKGLKTLAMTTNGIT-----------LSRKLPRLKEAGLTSLNISLDTLVPAK 174 (373)
T ss_pred CEEEEECCCCcchh--hHHHHHHHHHhcCCCceEEEeeCcch-----------HHHHHHHHHhCCCCeEEEeeccCCHHH
Confidence 44556666655544 355666666654 432 223 433 233455667788888888855431
Q ss_pred -------CChhHHHHHHHHHHHcCCc-ccceeee
Q 026320 78 -------IPEETLLRYVRLVKSAGLK-AKPKFAV 103 (240)
Q Consensus 78 -------l~~~~r~~lI~~~~~~G~~-v~~E~g~ 103 (240)
-+.+..++.|+.+++.|+. ++-.+.+
T Consensus 175 ~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv 208 (373)
T PLN02951 175 FEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVV 208 (373)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1225566778888888873 4444433
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=2.9 Score=38.26 Aligned_cols=138 Identities=18% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCcccEEEecCccccccChhHHHHHHHHHHhCCce--ecCC---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cc
Q 026320 2 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GS 75 (240)
Q Consensus 2 g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~--v~~G---tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gt 75 (240)
.+|+|++|+|-+...=++ .|++ +-+.|.+ +..| |.-|.. .-++++++-|-+-|=+=. |+
T Consensus 96 ~e~vdilqIgs~~~~n~~--LL~~----va~tgkPVilk~G~~~t~~e~~---------~A~e~i~~~Gn~~i~L~eRg~ 160 (250)
T PRK13397 96 YDYLDVIQVGARNMQNFE--FLKT----LSHIDKPILFKRGLMATIEEYL---------GALSYLQDTGKSNIILCERGV 160 (250)
T ss_pred HhcCCEEEECcccccCHH--HHHH----HHccCCeEEEeCCCCCCHHHHH---------HHHHHHHHcCCCeEEEEcccc
Confidence 468999999866554433 3333 2234554 4457 333332 223344566765555555 76
Q ss_pred ccCChhHH----HHHHHHHHH-cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 76 LEIPEETL----LRYVRLVKS-AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 76 i~l~~~~r----~~lI~~~~~-~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-.-|...| ++.|..+++ .++.|+ + ++....| . .+.+...++..+.+||
T Consensus 161 ~~Y~~~~~n~~dl~ai~~lk~~~~lPVi----v-d~SHs~G---~-------------------r~~v~~~a~AAvA~GA 213 (250)
T PRK13397 161 RGYDVETRNMLDIMAVPIIQQKTDLPII----V-DVSHSTG---R-------------------RDLLLPAAKIAKAVGA 213 (250)
T ss_pred CCCCCccccccCHHHHHHHHHHhCCCeE----E-CCCCCCc---c-------------------cchHHHHHHHHHHhCC
Confidence 66665544 466666766 232211 1 0111121 1 2444677888899999
Q ss_pred cEEEEecc-----ccccCCCCccHHHHHHHHhccCC
Q 026320 151 DMIMIDSD-----DVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 151 ~~ViiEar-----gi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
+-+|||-- -.+|..-.+..+.++++++++..
T Consensus 214 dGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 214 NGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred CEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 99999983 78999999999999999987754
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=90.20 E-value=3.1 Score=37.86 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=41.4
Q ss_pred ccccccChhHHHHHHHHHHhC-CceecC--C-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~-gV~v~~--G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
|......++.+.+-++-.+++ ++++.- . +. +.+.++.+.+.+.|.|.|.++|.+..
T Consensus 135 g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~---------~~~~~~a~~l~~~G~d~i~~~nt~~g 194 (301)
T PRK07259 135 GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV---------TDIVEIAKAAEEAGADGLSLINTLKG 194 (301)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc---------hhHHHHHHHHHHcCCCEEEEEccccc
Confidence 566677788899999999987 665553 2 22 24667788899999999999876543
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=90.17 E-value=6.8 Score=36.28 Aligned_cols=112 Identities=27% Similarity=0.387 Sum_probs=69.4
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhCCceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----- 77 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----- 77 (240)
..+-|++|--.+.| .+.+.++.++++|+.+. | |+++ -++.++.+++.|++.|-||=...+
T Consensus 55 ~~v~~~GGEPll~~--~~~~ii~~~~~~g~~~~l~TNG~ll----------~~e~~~~L~~~g~~~v~iSldg~~~e~~d 122 (358)
T TIGR02109 55 LQLHFSGGEPLARP--DLVELVAHARRLGLYTNLITSGVGL----------TEARLDALADAGLDHVQLSFQGVDEALAD 122 (358)
T ss_pred cEEEEeCccccccc--cHHHHHHHHHHcCCeEEEEeCCccC----------CHHHHHHHHhCCCCEEEEeCcCCCHHHHH
Confidence 34667778887766 47788888888887443 4 6542 145667778889999998855442
Q ss_pred ----C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 78 ----I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 78 ----l--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
. +.+.-.+.|+.+++.|+.+.--+.+. + .+.+++-+.++-..+-|++
T Consensus 123 ~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~--------~-------------------~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 123 RIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIH--------R-------------------HNIDQIPEIIELAIELGAD 175 (358)
T ss_pred HhcCCccHHHHHHHHHHHHHhCCCceEEEEEec--------c-------------------CCHHHHHHHHHHHHHcCCC
Confidence 1 12233566778888877643222221 1 1244555555555677999
Q ss_pred EEEEe
Q 026320 152 MIMID 156 (240)
Q Consensus 152 ~ViiE 156 (240)
.+-+.
T Consensus 176 ~i~~~ 180 (358)
T TIGR02109 176 RVELA 180 (358)
T ss_pred EEEEE
Confidence 87664
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=90.04 E-value=9.1 Score=35.21 Aligned_cols=115 Identities=24% Similarity=0.298 Sum_probs=68.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHh-CCc-e--ecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~-~gV-~--v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-- 77 (240)
|.-+.|.+|-..+.+ .+.+.++.+++ .|+ . +.| |+++ +++++..++.|.+.|-||=.+.+
T Consensus 60 v~~V~ltGGEPll~~--~l~~li~~i~~~~gi~~v~itTNG~ll-----------~~~~~~L~~~gl~~v~ISld~~~~~ 126 (334)
T TIGR02666 60 VRKVRLTGGEPLLRK--DLVELVARLAALPGIEDIALTTNGLLL-----------ARHAKDLKEAGLKRVNVSLDSLDPE 126 (334)
T ss_pred CCEEEEECccccccC--CHHHHHHHHHhcCCCCeEEEEeCchhH-----------HHHHHHHHHcCCCeEEEecccCCHH
Confidence 445666667666554 35666665555 344 2 223 4433 34567778889998888855432
Q ss_pred ---------CChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH
Q 026320 78 ---------IPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 147 (240)
Q Consensus 78 ---------l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 147 (240)
-+.+...+.|+.+++.|+. ++--+-+..+. +.+++.+.++-..+
T Consensus 127 ~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~--------------------------n~~ei~~l~~~~~~ 180 (334)
T TIGR02666 127 RFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGV--------------------------NDDEIVDLAEFAKE 180 (334)
T ss_pred HhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCC--------------------------CHHHHHHHHHHHHh
Confidence 2456777888888888886 44433331100 23455555666668
Q ss_pred cCCcEEEEecc
Q 026320 148 AGADMIMIDSD 158 (240)
Q Consensus 148 AGA~~ViiEar 158 (240)
.|+..-.+|--
T Consensus 181 ~gv~~~~ie~m 191 (334)
T TIGR02666 181 RGVTLRFIELM 191 (334)
T ss_pred cCCeEEEEecc
Confidence 88887777654
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=90.02 E-value=2.4 Score=36.54 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc---CC
Q 026320 21 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA---GL 95 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~---G~ 95 (240)
+.+++-++.++.+|+.+.. -||-| ++.+.++|++.|=++.-+......+ .++++++++. +.
T Consensus 108 ~~~~~~~~~~~~~g~~~~v~v~~~~e-------------~~~~~~~g~~~i~~t~~~~~~~~~~-~~~~~~l~~~~~~~~ 173 (217)
T cd00331 108 EQLKELYELARELGMEVLVEVHDEEE-------------LERALALGAKIIGINNRDLKTFEVD-LNTTERLAPLIPKDV 173 (217)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCHHH-------------HHHHHHcCCCEEEEeCCCccccCcC-HHHHHHHHHhCCCCC
Confidence 5566666666666665432 24544 3444556777775552221111111 2444555442 44
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
.+..+.|+. + .+.+++.+++||+-|++=+ .||+..
T Consensus 174 pvia~gGI~-----------------------------s----~edi~~~~~~Ga~gvivGs-ai~~~~ 208 (217)
T cd00331 174 ILVSESGIS-----------------------------T----PEDVKRLAEAGADAVLIGE-SLMRAP 208 (217)
T ss_pred EEEEEcCCC-----------------------------C----HHHHHHHHHcCCCEEEECH-HHcCCC
Confidence 555555552 2 4566777889999999843 355543
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=90.02 E-value=3.4 Score=42.43 Aligned_cols=126 Identities=13% Similarity=0.115 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--c
Q 026320 22 FIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--K 98 (240)
Q Consensus 22 ~l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~ 98 (240)
.+++-+++++++|. .+..+ .|.+..-+++.+.++++.+.+.|.+.|=+.|-.--+.+.+-.++|+.++++ +.. .
T Consensus 211 ~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~-~~~~~~ 287 (632)
T PLN02321 211 IARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKAN-TPGIEN 287 (632)
T ss_pred HHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHh-cCCCCC
Confidence 36678889999986 34443 334445556688899999999999999999999999999999999999874 110 1
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
..+++.+ -.|....+-.....++|||+.| |+- |+=+..||...+.+-..+
T Consensus 288 v~i~vH~--------------------------HND~GlAvANslaAv~AGA~~V--d~TinGlGERaGNa~LEevv~~L 339 (632)
T PLN02321 288 VIISTHC--------------------------QNDLGLSTANTLAGAHAGARQV--EVTINGIGERAGNASLEEVVMAI 339 (632)
T ss_pred ceEEEEe--------------------------CCCCCHHHHHHHHHHHhCCCEE--EEecccccccccCccHHHHHHHH
Confidence 1234432 2234555777778899999984 775 777889999988777666
Q ss_pred hc
Q 026320 177 GR 178 (240)
Q Consensus 177 ~~ 178 (240)
..
T Consensus 340 ~~ 341 (632)
T PLN02321 340 KC 341 (632)
T ss_pred Hh
Confidence 54
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.94 E-value=1.7 Score=39.29 Aligned_cols=74 Identities=31% Similarity=0.384 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCcccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---------~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.++.+.+++.|||+|||+=++- --+.+.-.++++.+++. + +| +.+|-.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~---~P-v~vKl~---------------- 162 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATD---VP-VIVKLT---------------- 162 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccC---CC-EEEEeC----------------
Confidence 455666677788999999975432 22345556788888875 2 22 444421
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
| +.++..+.++...++||+.|.+=
T Consensus 163 -~---------~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 163 -P---------NVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred -C---------CchhHHHHHHHHHHcCCCEEEEE
Confidence 0 12355677778889999988763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.65 Score=42.41 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHhC---Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC----------hhH
Q 026320 20 KPFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP----------EET 82 (240)
Q Consensus 20 ~~~l~eKi~l~~~~---gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~----------~~~ 82 (240)
...+.+.++-.++. ++ +++++.+.+--+.. +...++++.+.+.|.++|+||.|+..-+ ...
T Consensus 191 ~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~--~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~ 268 (327)
T cd02803 191 ARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL--EEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGY 268 (327)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCH--HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcch
Confidence 34566777766663 33 33443322111111 1456677888899999999999986432 234
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHc-CCcEEEEeccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEA-GADMIMIDSDDVC 161 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeA-GA~~ViiEargi~ 161 (240)
..++++.+++. +++ +..-.| .. .+ .+.+++.|++ |||.|.+ +|.++
T Consensus 269 ~~~~~~~ir~~-------~~i--PVi~~G--------gi-----------~t----~~~a~~~l~~g~aD~V~i-gR~~l 315 (327)
T cd02803 269 FLELAEKIKKA-------VKI--PVIAVG--------GI-----------RD----PEVAEEILAEGKADLVAL-GRALL 315 (327)
T ss_pred hHHHHHHHHHH-------CCC--CEEEeC--------CC-----------CC----HHHHHHHHHCCCCCeeee-cHHHH
Confidence 45667777663 211 111011 11 12 4556777888 7999998 67654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=89.83 E-value=3 Score=36.07 Aligned_cols=64 Identities=23% Similarity=0.403 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
..+++++.|++.|.+.|.++++ .+ .++++.+++.++.+. .+. .
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~---~~----~~~~~~~~~~~i~~i----~~v-----------------~--------- 110 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG---PP----AEVVERLKAAGIKVI----PTV-----------------T--------- 110 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC---CC----HHHHHHHHHcCCEEE----EeC-----------------C---------
Confidence 6888999999999999999988 22 346667776654432 210 0
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+ .+++++..++||++|++.+.
T Consensus 111 -~----~~~~~~~~~~gad~i~~~~~ 131 (236)
T cd04730 111 -S----VEEARKAEAAGADALVAQGA 131 (236)
T ss_pred -C----HHHHHHHHHcCCCEEEEeCc
Confidence 1 24455667799999999886
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=89.77 E-value=2.2 Score=39.29 Aligned_cols=114 Identities=20% Similarity=0.218 Sum_probs=69.7
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHH
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLL 84 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~~~~r~ 84 (240)
|+|+..+-.++.+.+-++-.++. ++++.. ++|-+ +.....++.+.+.+.|.+.|-|+..+.. .+..-..
T Consensus 107 ~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-----~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~ 181 (319)
T TIGR00737 107 GAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-----AHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANW 181 (319)
T ss_pred CccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC-----CcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhH
Confidence 45666677778888888888763 444432 34432 2124678889999999999999865432 2222335
Q ss_pred HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHH-HcCCcEEEEecccccc
Q 026320 85 RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCL-EAGADMIMIDSDDVCK 162 (240)
Q Consensus 85 ~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dL-eAGA~~ViiEargi~d 162 (240)
++++.+++. +++ +.--. ++ ..| .+.+.+.| +.|||.||+ ||+++.
T Consensus 182 ~~i~~i~~~-------~~i--pvi~n---Gg----------------I~~----~~da~~~l~~~gad~Vmi-gR~~l~ 227 (319)
T TIGR00737 182 DIIARVKQA-------VRI--PVIGN---GD----------------IFS----PEDAKAMLETTGCDGVMI-GRGALG 227 (319)
T ss_pred HHHHHHHHc-------CCC--cEEEe---CC----------------CCC----HHHHHHHHHhhCCCEEEE-Chhhhh
Confidence 788888773 221 11000 11 113 34455556 579999999 887764
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=89.74 E-value=3 Score=42.55 Aligned_cols=97 Identities=15% Similarity=0.202 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+-++.|++.+.+.|.|.+-|-|..-+++.-.. .|+.+++.|..+..-+-.. . ++
T Consensus 96 ~vv~~~v~~a~~~Gidv~Rifd~lnd~~n~~~--~i~~~k~~G~~~~~~i~yt--~-------sp--------------- 149 (596)
T PRK14042 96 DVVRAFVKLAVNNGVDVFRVFDALNDARNLKV--AIDAIKSHKKHAQGAICYT--T-------SP--------------- 149 (596)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccCcchHHHHH--HHHHHHHcCCEEEEEEEec--C-------CC---------------
Confidence 46888999999999999999998888887765 8999999998665432221 0 11
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.-|++.+++.++.-.++||+.|- |.|..|-..+..+.+++..+
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~-----IkDtaG~l~P~~v~~lv~al 192 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIA-----IKDMAGLLTPTVTVELYAGL 192 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE-----eCCcccCCCHHHHHHHHHHH
Confidence 11589999999999999998764 67888888888888777654
|
|
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=89.62 E-value=3.8 Score=39.03 Aligned_cols=123 Identities=13% Similarity=0.182 Sum_probs=79.4
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
-|+-+=||+||..+++.+.|++-++.++++= +..+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 73 ~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~ 149 (394)
T PRK08898 73 QVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLK 149 (394)
T ss_pred ceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHH
Confidence 3667779999999999999999999998751 11111 13333333322 25789999999999988754443
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
.-+.++-.+.|+.+++.+..|- +....+. |. ++.+.+.+.++..++.+.++
T Consensus 150 ~l~R~~~~~~~~~~i~~~~~~~~~v~--~dlI~Gl----------------Pg-------qt~~~~~~~l~~~~~l~p~~ 204 (394)
T PRK08898 150 ALGRIHDGAEARAAIEIAAKHFDNFN--LDLMYAL----------------PG-------QTLDEALADVETALAFGPPH 204 (394)
T ss_pred HhCCCCCHHHHHHHHHHHHHhCCceE--EEEEcCC----------------CC-------CCHHHHHHHHHHHHhcCCCE
Confidence 1233455567777777533221 2222221 11 25788888899999999987
Q ss_pred EE
Q 026320 153 IM 154 (240)
Q Consensus 153 Vi 154 (240)
|-
T Consensus 205 is 206 (394)
T PRK08898 205 LS 206 (394)
T ss_pred EE
Confidence 63
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=89.61 E-value=3.2 Score=45.26 Aligned_cols=102 Identities=20% Similarity=0.267 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++|++.+.+.|.+.+-|.|..-++ +.....|+.+++.|..+...++.. .++ -|+ .. ..
T Consensus 628 v~~~~i~~a~~~Gid~~rifd~lnd~--~~~~~~i~~vk~~g~~~~~~i~yt---g~~---~d~--------~~----~~ 687 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIFDSLNWV--ENMRVAIDAVRETGKIAEAAICYT---GDI---LDP--------AR----AK 687 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCChH--HHHHHHHHHHHHcCCeEEEEEEEE---ecC---CCC--------CC----CC
Confidence 57889999999999999999988886 446678999999988655555542 111 121 11 01
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
-|++.+++.++.-.++||+.|- |.|..|-+.+..+.++++.+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~-----ikDt~G~l~P~~~~~lv~~l 729 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILA-----IKDMAGLLKPAAAYELVSAL 729 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEE-----ECCccCCCCHHHHHHHHHHH
Confidence 2689999999999999999664 67888888888887777654
|
|
| >TIGR01211 ELP3 histone acetyltransferase, ELP3 family | Back alignment and domain information |
|---|
Probab=89.56 E-value=2.5 Score=42.41 Aligned_cols=131 Identities=22% Similarity=0.275 Sum_probs=86.2
Q ss_pred CCcccEE--EecCccccccChhHHHHHHHHHHhCC-ceecC--C-cHHHHHHH---------------hCCch-HHHHHH
Q 026320 2 GQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-FKEYVE 59 (240)
Q Consensus 2 g~yID~l--Kfg~GTs~l~p~~~l~eKi~l~~~~g-V~v~~--G-tl~E~a~~---------------qg~~~-~~~yl~ 59 (240)
|+.+|=+ =|.+||+.-+|.+.++.-++.++++= -+... + .-+|-+.. -.|+. -++.++
T Consensus 131 g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~e~L~ 210 (522)
T TIGR01211 131 GHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCREEHID 210 (522)
T ss_pred CCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCHHHHH
Confidence 5555522 38999999999999999999998761 11111 1 00222221 12333 478999
Q ss_pred HHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 60 DCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 60 ~~k~lGF~~IEISdGti----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.++++|++.||+--=|. --+.++-.+.++.++++||++...+ ..++ +.
T Consensus 211 ~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~L--M~GL----Pg---------------- 268 (522)
T TIGR01211 211 RMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHI--MPGL----PG---------------- 268 (522)
T ss_pred HHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEe--ecCC----CC----------------
Confidence 99999999999865544 2455666788999999999755433 3222 01
Q ss_pred ccccCHHHHHHHHHHHHH---cCCcEEEEec
Q 026320 130 EYVEDVDLLIRRAERCLE---AGADMIMIDS 157 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLe---AGA~~ViiEa 157 (240)
+|++..++.++..++ .+.+.|-+-.
T Consensus 269 ---qt~e~~~~t~~~l~~~~~l~pD~Ikiyp 296 (522)
T TIGR01211 269 ---SSFERDLEMFREIFEDPRFKPDMLKIYP 296 (522)
T ss_pred ---CCHHHHHHHHHHHHhccCCCcCEEEEec
Confidence 146777888877764 7899887665
|
The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases. |
| >PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3 | Back alignment and domain information |
|---|
Probab=89.47 E-value=1.2 Score=36.52 Aligned_cols=148 Identities=18% Similarity=0.240 Sum_probs=84.2
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccC
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVED 134 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~---~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~ 134 (240)
|+.++++||+.||++-....... ++..++.+.+++.|+++..--...+.........++ -.. ....
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~----------~~~-r~~~ 69 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSA----------NDE-REEA 69 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTS----------SSH-HHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCc----------chh-hHHH
Confidence 57899999999999987765554 577789999999999965533332211100000000 000 1112
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeccc--cccCCCC--cc---H---HHHHHHHhccCCCceEEecCC------c---hhHH
Q 026320 135 VDLLIRRAERCLEAGADMIMIDSDD--VCKHADS--LR---A---DIIAKVIGRLGLEKTMFEATN------P---RTSE 195 (240)
Q Consensus 135 ~~~~i~~~~~dLeAGA~~ViiEarg--i~d~~g~--~r---~---d~v~~i~~~~~~~~lifEAP~------k---~qQ~ 195 (240)
.+.+.+.++..=..|+..|++-+-. ....... .. . ..+.+++++.|+ ++.+|--. . .+..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~i~lE~~~~~~~~~~~~~~~~~ 148 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGV-RIALENHPGPFSETPFSVEEIY 148 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS-EEEEE-SSSSSSSEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcc-eEEEecccCccccchhhHHHHH
Confidence 4555555555567799999998541 1111110 00 1 122233334453 47777432 2 5678
Q ss_pred HHHHHhC-CCcccccCCCCchhh
Q 026320 196 WFIRRYG-PKVNLFVDHSQVMDL 217 (240)
Q Consensus 196 ~~I~~fG-~~VNLgI~~~dVl~L 217 (240)
++++.++ |+|++.++..+...-
T Consensus 149 ~~l~~~~~~~~~i~~D~~h~~~~ 171 (213)
T PF01261_consen 149 RLLEEVDSPNVGICFDTGHLIMA 171 (213)
T ss_dssp HHHHHHTTTTEEEEEEHHHHHHT
T ss_pred HHHhhcCCCcceEEEehHHHHHc
Confidence 9999999 667776776665543
|
1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B .... |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=89.43 E-value=5 Score=38.20 Aligned_cols=94 Identities=24% Similarity=0.387 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCEEEecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+-++.+.+.|++.|-|+..+-++ +. +.-.+.|+.+++.|+.| .|+-.+..
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v--~~~~ed~~--------------- 140 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYV--SFSAEDAS--------------- 140 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEeccCC---------------
Confidence 566888999999999998765443 22 33345888999999874 33432100
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.++...++||+.|. ++|..|-..+..+.+++..+
T Consensus 141 ---------r~~~~~l~~~~~~~~~~Ga~~I~-----l~DT~G~~~P~~v~~lv~~l 183 (378)
T PRK11858 141 ---------RTDLDFLIEFAKAAEEAGADRVR-----FCDTVGILDPFTMYELVKEL 183 (378)
T ss_pred ---------CCCHHHHHHHHHHHHhCCCCEEE-----EeccCCCCCHHHHHHHHHHH
Confidence 12589999999999999999864 67888999988888877654
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=89.38 E-value=2.1 Score=36.77 Aligned_cols=76 Identities=14% Similarity=0.265 Sum_probs=50.8
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHH
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLL 84 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l--~~~~r~ 84 (240)
++|++.+-..+.+.+.++-.++. ++.+.- .+|-+. ....++++.+.+.|++.|.|+.++... ...-..
T Consensus 99 ~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~ 172 (231)
T cd02801 99 GAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EETLELAKALEDAGASALTVHGRTREQRYSGPADW 172 (231)
T ss_pred CeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCH
Confidence 36677777888899999988864 222222 234221 267788899999999999999987532 212234
Q ss_pred HHHHHHHH
Q 026320 85 RYVRLVKS 92 (240)
Q Consensus 85 ~lI~~~~~ 92 (240)
+.++.+++
T Consensus 173 ~~~~~i~~ 180 (231)
T cd02801 173 DYIAEIKE 180 (231)
T ss_pred HHHHHHHh
Confidence 66777766
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.10 E-value=2.6 Score=39.29 Aligned_cols=117 Identities=19% Similarity=0.307 Sum_probs=78.2
Q ss_pred HHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-----------ccCChhHHHHHHHHHHHc
Q 026320 28 KRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-----------LEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 28 ~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-----------i~l~~~~r~~lI~~~~~~ 93 (240)
++++.-+|++.- .||-+ +..+.+.++...+.|.-+|-|=|.. --+|.++..+-|+.+++.
T Consensus 72 ~I~~~~~iPviaD~d~GyG~------~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a 145 (292)
T PRK11320 72 RITDACDLPLLVDIDTGFGG------AFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDA 145 (292)
T ss_pred HHHhccCCCEEEECCCCCCC------HHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHh
Confidence 344555676663 23432 2356667788889999999998854 236999988888888774
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH
Q 026320 94 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 173 (240)
Q Consensus 94 G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~ 173 (240)
-- -++|-+- ..+ |. + + ....++.|+++++..+||||.|.+|+- -..+.+.
T Consensus 146 ~~--~~d~~Ii---ART----Da-~--------~----~~g~deAI~Ra~aY~eAGAD~ifi~~~--------~~~~~i~ 195 (292)
T PRK11320 146 RT--DPDFVIM---ART----DA-L--------A----VEGLDAAIERAQAYVEAGADMIFPEAM--------TELEMYR 195 (292)
T ss_pred cc--CCCeEEE---Eec----Cc-c--------c----ccCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHH
Confidence 21 1344441 111 11 0 0 124789999999999999999999973 1367777
Q ss_pred HHHhccC
Q 026320 174 KVIGRLG 180 (240)
Q Consensus 174 ~i~~~~~ 180 (240)
++.+.++
T Consensus 196 ~~~~~~~ 202 (292)
T PRK11320 196 RFADAVK 202 (292)
T ss_pred HHHHhcC
Confidence 7877665
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=2.8 Score=36.36 Aligned_cols=97 Identities=23% Similarity=0.333 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHh-CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-CcccC---ChhHHHHHHHHHHHc-C
Q 026320 21 PFIEEVVKRAHQ-HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEI---PEETLLRYVRLVKSA-G 94 (240)
Q Consensus 21 ~~l~eKi~l~~~-~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~l---~~~~r~~lI~~~~~~-G 94 (240)
+.+.+.++.+|+ .++.+.++. ...++ ...+.+.|+++|-++. |.... .......+++.+++. +
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v----------~t~ee-~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~ 173 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADC----------STLEE-GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG 173 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeC----------CCHHH-HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC
Confidence 346666666666 666655432 01222 2456788999887743 22111 111224566666654 4
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
..+....|++ + .+.+++.+++||+-|++=+ .+++
T Consensus 174 iPvia~GGI~-----------------------------t----~~~~~~~l~~GadgV~iGs-ai~~ 207 (221)
T PRK01130 174 CPVIAEGRIN-----------------------------T----PEQAKKALELGAHAVVVGG-AITR 207 (221)
T ss_pred CCEEEECCCC-----------------------------C----HHHHHHHHHCCCCEEEEch-HhcC
Confidence 5555555552 2 3566777899999999853 3554
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=15 Score=32.60 Aligned_cols=117 Identities=14% Similarity=0.100 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
..++|++.|++.|.+.|=|=|=.++- .++-.++++.++++|+++..++.-..
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T--------------------------- 140 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKF--------------------------- 140 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCC---------------------------
Confidence 68899999999999999884322221 35667899999999999888776621
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHH---hccCCCceEEecCC-chhHHHHHHHhCCCc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVI---GRLGLEKTMFEATN-PRTSEWFIRRYGPKV 205 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~---~~~~~~~lifEAP~-k~qQ~~~I~~fG~~V 205 (240)
+ .++++.-++.....+++ +. +.+. +.+.+++.+.+- +..+-..++.+.=- ...+...+...|.|.
T Consensus 141 --~---~e~l~~~~~~~~~~l~m-sv~~~~g--~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~ 210 (244)
T PRK13125 141 --P---DLLIHRLSKLSPLFIYY-GLRPATG--VPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADG 210 (244)
T ss_pred --C---HHHHHHHHHhCCCEEEE-EeCCCCC--CCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCE
Confidence 1 34444555666666655 53 3442 245555444432 22221235556554 446677777777663
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=88.69 E-value=3.4 Score=37.08 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l--------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.+.++.+.+.+.|+++|||+-++-.. ..+.-.++++.+++. . -+| +.+|-..
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~-~-~~p-v~vKl~~----------------- 171 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA-V-DIP-LLVKLSP----------------- 171 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc-c-CCC-EEEEeCC-----------------
Confidence 55666777788899999998765332 234456778888773 1 011 4554321
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
. .+.++..+.++...++||+.|.+-.+
T Consensus 172 ~-------~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 172 Y-------FDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred C-------CCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 0 13567888899999999999999765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=88.67 E-value=4.8 Score=35.25 Aligned_cols=116 Identities=11% Similarity=0.099 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
-+.+.+.++++|.++|-+-+.--.++.++-.++++.+++.|+.++.+++-
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~------------------------------ 123 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN------------------------------ 123 (223)
T ss_pred hhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC------------------------------
Confidence 34568999999999999988766688888889999999999988742221
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecccccc---CCCCccHHHHHHHHhccC----CCceEEecC-CchhHHHHHHHhCCC
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCK---HADSLRADIIAKVIGRLG----LEKTMFEAT-NPRTSEWFIRRYGPK 204 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d---~~g~~r~d~v~~i~~~~~----~~~lifEAP-~k~qQ~~~I~~fG~~ 204 (240)
.+++++-.+.|.+.|=+|.++... .......+.++++++.+. --.++-+.- +...+...+...|.+
T Consensus 124 -----~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gad 197 (223)
T PRK04302 124 -----PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGAD 197 (223)
T ss_pred -----HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCC
Confidence 123334456789999999875321 111123444554443332 124555554 244455555555554
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=88.51 E-value=9.5 Score=33.98 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=41.0
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 41 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 41 tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
+.+...+.. .++.|++.|++.|.+.|=+-| +|.++..++++.++++|+++..
T Consensus 83 ~y~n~~~~~---G~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 83 GYYNPILQY---GLERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred EecCHHHHh---CHHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 344444444 389999999999999998864 5778888999999999887655
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.35 E-value=2 Score=38.03 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=71.7
Q ss_pred HHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 026320 25 EVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 25 eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+-++...+++| .+.-|.=.| ..-+..+.+.+.|+++|||. +......+.|+.+++.. |++-+
T Consensus 7 ~~~~~l~~~~~iaV~r~~~~~--------~a~~i~~al~~~Gi~~iEit-----l~~~~~~~~I~~l~~~~----p~~~I 69 (212)
T PRK05718 7 SIEEILRAGPVVPVIVINKLE--------DAVPLAKALVAGGLPVLEVT-----LRTPAALEAIRLIAKEV----PEALI 69 (212)
T ss_pred HHHHHHHHCCEEEEEEcCCHH--------HHHHHHHHHHHcCCCEEEEe-----cCCccHHHHHHHHHHHC----CCCEE
Confidence 34456677887 444453333 33455678889999999998 55567889999998731 22222
Q ss_pred ecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--cc---ccC------CCCccHHHH
Q 026320 104 MFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DV---CKH------ADSLRADII 172 (240)
Q Consensus 104 k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi---~d~------~g~~r~d~v 172 (240)
|+ |.-+ + .++++..++|||++++.=+= ++ +.+ =|-....++
T Consensus 70 -------GA------GTVl-----------~----~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iPG~~TptEi 121 (212)
T PRK05718 70 -------GA------GTVL-----------N----PEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIPGVSTPSEL 121 (212)
T ss_pred -------EE------eecc-----------C----HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHH
Confidence 20 1111 2 38899999999999997662 11 111 155556666
Q ss_pred HHHHhccCCCceEE
Q 026320 173 AKVIGRLGLEKTMF 186 (240)
Q Consensus 173 ~~i~~~~~~~~lif 186 (240)
.+. .+.|.+-+-+
T Consensus 122 ~~a-~~~Ga~~vKl 134 (212)
T PRK05718 122 MLG-MELGLRTFKF 134 (212)
T ss_pred HHH-HHCCCCEEEE
Confidence 554 3577666655
|
|
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=88.31 E-value=6.8 Score=36.70 Aligned_cols=110 Identities=28% Similarity=0.359 Sum_probs=59.3
Q ss_pred EEecCccccccChhHHHHHHHHHHhCCcee--cC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-------
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE------- 77 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v--~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~------- 77 (240)
+-|.+|--.+.| .+.+.++.+++.|+.+ .| |+++ -++.++..++.|++.|.||=...+
T Consensus 66 v~~~GGEPll~~--~~~~il~~~~~~g~~~~i~TNG~ll----------~~~~~~~L~~~g~~~v~iSldg~~~e~~d~i 133 (378)
T PRK05301 66 LHFSGGEPLLRK--DLEELVAHARELGLYTNLITSGVGL----------TEARLAALKDAGLDHIQLSFQDSDPELNDRL 133 (378)
T ss_pred EEEECCccCCch--hHHHHHHHHHHcCCcEEEECCCccC----------CHHHHHHHHHcCCCEEEEEecCCCHHHHHHH
Confidence 445556655554 3556666666666532 23 4331 123445556677777777744331
Q ss_pred --C--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 78 --I--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 78 --l--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
. +.+...+.|+.+++.|++|..-+.+. ..+.+++.+.++-..+.|++.|
T Consensus 134 rg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~---------------------------~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 134 AGTKGAFAKKLAVARLVKAHGYPLTLNAVIH---------------------------RHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred cCCCchHHHHHHHHHHHHHCCCceEEEEEee---------------------------cCCHHHHHHHHHHHHHcCCCEE
Confidence 1 23444556677777776543322221 0134555555666667899988
Q ss_pred EEe
Q 026320 154 MID 156 (240)
Q Consensus 154 iiE 156 (240)
.+-
T Consensus 187 ~~~ 189 (378)
T PRK05301 187 ELA 189 (378)
T ss_pred EEe
Confidence 764
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=88.20 E-value=16 Score=31.46 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
..++.|.+.|.+.|=+..- .++.++-.++++.++..|+.+..++.-
T Consensus 85 ~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v~~-------------------------------- 130 (217)
T cd00331 85 YQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEVHD-------------------------------- 130 (217)
T ss_pred HHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEECC--------------------------------
Confidence 3799999999999998443 456677778999998877777544421
Q ss_pred HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC-CceEEecCCch-hHHHHHHHhCCC
Q 026320 136 DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL-EKTMFEATNPR-TSEWFIRRYGPK 204 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~-~~lifEAP~k~-qQ~~~I~~fG~~ 204 (240)
.+++++.+++|++++.+=++.... -....+.+.++.+.++. -.++-+.=-.. .+..-+...|.+
T Consensus 131 ---~~e~~~~~~~g~~~i~~t~~~~~~--~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 131 ---EEELERALALGAKIIGINNRDLKT--FEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred ---HHHHHHHHHcCCCEEEEeCCCccc--cCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 234677788999999876542211 12234666777665542 24444544322 455555555654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.5 Score=39.76 Aligned_cols=62 Identities=8% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 33 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 33 ~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+++++..=|++-..+.. .+++|++.|++.|.+.+=|- +||.++..++++.++++|+..++=+
T Consensus 77 ~~~p~ilm~Y~N~i~~~---G~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 77 LSCPIVLFTYYNPILKR---GIDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred CCCCEEEEecccHHHHh---HHHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 45543333677777766 49999999999999999887 5899999999999999999877644
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=88.17 E-value=3.2 Score=41.44 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=63.4
Q ss_pred HHHHHHHc----CCCEEEecCCcccCChhHH------------HHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 57 YVEDCKQV----GFDTIELNVGSLEIPEETL------------LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 57 yl~~~k~l----GF~~IEISdGti~l~~~~r------------~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
-++.+.+. |.+.|-+.-.+-++-.+.+ .+.|+.++++|++. .+|+-.+.
T Consensus 169 dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~-v~f~~EDa-------------- 233 (503)
T PLN03228 169 DIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHD-IQFGCEDG-------------- 233 (503)
T ss_pred hHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCce-EEeccccc--------------
Confidence 34444444 7777887655554443322 57888999998861 23443211
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+.+.++...++||+.| .++|..|-..+..+.+++..+
T Consensus 234 ----------~Rtd~efl~~~~~~a~~~Gad~I-----~l~DTvG~~tP~~v~~lV~~l 277 (503)
T PLN03228 234 ----------GRSDKEFLCKILGEAIKAGATSV-----GIADTVGINMPHEFGELVTYV 277 (503)
T ss_pred ----------cccCHHHHHHHHHHHHhcCCCEE-----EEecCCCCCCHHHHHHHHHHH
Confidence 01257889999999999999986 478899999998888877554
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=87.98 E-value=9 Score=35.09 Aligned_cols=106 Identities=17% Similarity=0.285 Sum_probs=71.8
Q ss_pred hCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCC
Q 026320 32 QHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 111 (240)
Q Consensus 32 ~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg 111 (240)
..++++..=|++...+..| +++|++.|++.|++.+=| -+||.++..++.+.++++|+..++=+...
T Consensus 85 ~~~~pivlm~Y~N~i~~~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~------- 150 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQYG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPT------- 150 (259)
T ss_dssp CTSSEEEEEE-HHHHHHH----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETT-------
T ss_pred CCCCCEEEEeeccHHhccc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCC-------
Confidence 3455666668889888886 999999999999998876 46889999999999999998877644431
Q ss_pred CccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccHHHHHHHHh
Q 026320 112 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 112 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~d~v~~i~~ 177 (240)
+++++++.+. +.+..+|=.=++ |++-....+.. .+.+.++
T Consensus 151 ----------------------t~~~Ri~~i~---~~a~gFiY~vs~~GvTG~~~~~~~-~l~~~i~ 191 (259)
T PF00290_consen 151 ----------------------TPEERIKKIA---KQASGFIYLVSRMGVTGSRTELPD-ELKEFIK 191 (259)
T ss_dssp ----------------------S-HHHHHHHH---HH-SSEEEEESSSSSSSTTSSCHH-HHHHHHH
T ss_pred ----------------------CCHHHHHHHH---HhCCcEEEeeccCCCCCCcccchH-HHHHHHH
Confidence 2466666654 444556665555 77766665543 3444443
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.97 E-value=20 Score=33.21 Aligned_cols=116 Identities=18% Similarity=0.268 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|. +|..++... ..+. ..
T Consensus 86 ~~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~------vgg~e~~v~---~~~~--~~ 152 (286)
T PRK06801 86 HFEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA------VGGDEGGAL---YGEA--DS 152 (286)
T ss_pred CHHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc------ccCCCCCcc---cCCc--cc
Confidence 346677888899999999 4543 4555544 4566677888888788887 221221100 0000 00
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc----ccccCCCCccHHHHHHHHhccCCCceEE
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRADIIAKVIGRLGLEKTMF 186 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar----gi~d~~g~~r~d~v~~i~~~~~~~~lif 186 (240)
.+-.+|++..+.++ +.|+|++=+ += |.|+..-.++-+.+.+|-+.++.--++-
T Consensus 153 ~~~T~pe~a~~f~~---~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlH 209 (286)
T PRK06801 153 AKFTDPQLARDFVD---RTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLH 209 (286)
T ss_pred ccCCCHHHHHHHHH---HHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Confidence 01125555444443 579999999 63 7888766799999999987765333333
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.86 E-value=5.8 Score=34.04 Aligned_cols=81 Identities=22% Similarity=0.275 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
+.+.+..+.+++.|||.|||+-|.- .=..+.-.++|+.+++. .. .-+.+|...+
T Consensus 67 ~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-~~--~~v~vk~r~~---------- 133 (231)
T cd02801 67 ETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-VP--IPVTVKIRLG---------- 133 (231)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-cC--CCEEEEEeec----------
Confidence 3455556667788999999996651 11333345667777653 10 1244442110
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|. +.++.++.++..-++|+++|.+-++
T Consensus 134 --------~~-----~~~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 134 --------WD-----DEEETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred --------cC-----CchHHHHHHHHHHHhCCCEEEECCC
Confidence 11 0135677777777899999999776
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=87.80 E-value=5.6 Score=36.49 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=46.5
Q ss_pred EEEecCccccccChhHHHHHHHHHHhC----CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---- 77 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~----gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~---- 77 (240)
-+.|.+|--.+.+ .+.+.++.+++. .|.+.| |++ ++++++.+++.|.+.|-||=.+.+
T Consensus 68 ~I~~tGGEPll~~--~l~~li~~i~~~~~~~~i~itTNG~l-----------l~~~~~~L~~agl~~i~ISlds~~~e~~ 134 (331)
T PRK00164 68 KVRLTGGEPLLRK--DLEDIIAALAALPGIRDLALTTNGYL-----------LARRAAALKDAGLDRVNVSLDSLDPERF 134 (331)
T ss_pred EEEEECCCCcCcc--CHHHHHHHHHhcCCCceEEEEcCchh-----------HHHHHHHHHHcCCCEEEEEeccCCHHHh
Confidence 4455556555543 355556655554 122333 332 334566677778888877744321
Q ss_pred ------CChhHHHHHHHHHHHcCC-ccccee
Q 026320 78 ------IPEETLLRYVRLVKSAGL-KAKPKF 101 (240)
Q Consensus 78 ------l~~~~r~~lI~~~~~~G~-~v~~E~ 101 (240)
-+.+...+.|+.+++.|+ .++-.+
T Consensus 135 ~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~ 165 (331)
T PRK00164 135 KAITGRDRLDQVLAGIDAALAAGLTPVKVNA 165 (331)
T ss_pred ccCCCCCCHHHHHHHHHHHHHCCCCcEEEEE
Confidence 245666777888888877 554444
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=87.72 E-value=11 Score=34.28 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
++++.++.++..-++|+++|-+=++
T Consensus 226 ~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 226 TLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5788899999999999999988655
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=87.61 E-value=7.7 Score=36.41 Aligned_cols=72 Identities=21% Similarity=0.321 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCC-----EEEecC----Ccc---cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFD-----TIELNV----GSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~-----~IEISd----Gti---~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.++-++.+|+.|.+ .+|+-+ ..+ ..+.++|.+.|+.+++.|+++.+ |...+..
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~s--g~i~Glg------------- 213 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNA--TMLYGHI------------- 213 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcce--EEEeeCC-------------
Confidence 46779999999986 355533 111 46778889999999999998866 4444332
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
++++++++.+..--+.+.+
T Consensus 214 -----------Et~edrv~~l~~Lr~l~~~ 232 (351)
T TIGR03700 214 -----------ETPAHRVDHMLRLRELQDE 232 (351)
T ss_pred -----------CCHHHHHHHHHHHHHhhHh
Confidence 1357777777766666664
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.57 E-value=5.9 Score=35.99 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=67.0
Q ss_pred HHHHHHHHHcCCCEEEecCCc--------ccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS--------LEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt--------i~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.++.+.+.|.+.|-+.-.. ...+.++ -.++|+.+++.|++| .++..+.. .
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v--~~~~eda~-----------r--- 137 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV--RFSSEDSF-----------R--- 137 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE--EEEEEeeC-----------C---
Confidence 456888999999999985432 2333333 456778999999764 45553211 0
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.+++.+.+.+++..++||+.| .+.|..|-..++.+.++++.+
T Consensus 138 ----------~~~~~l~~~~~~~~~~g~~~i-----~l~Dt~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 138 ----------SDLVDLLRVYRAVDKLGVNRV-----GIADTVGIATPRQVYELVRTL 179 (262)
T ss_pred ----------CCHHHHHHHHHHHHHcCCCEE-----EECCcCCCCCHHHHHHHHHHH
Confidence 136778888888899999965 468889999999999888754
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=87.50 E-value=3.8 Score=37.19 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 026320 50 GPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 50 g~~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
+.+.+.++++++.+.|.+.|=+.-.| ..|+.++|.++++.+.+.-=+|. +|+ |
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~vi--~gv-------g--------------- 73 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDKVI--FQV-------G--------------- 73 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCCEE--EEe-------C---------------
Confidence 34478899999999999999885443 58999999999998887421111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC-CCCccHHHHHHHHhccCCCceEEecCC
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH-ADSLRADIIAKVIGRLGLEKTMFEATN 190 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~-~g~~r~d~v~~i~~~~~~~~lifEAP~ 190 (240)
..++.+.++.++..-++||+.|++=.--.|.. .-+--.+-..++++ ++.=++...|.
T Consensus 74 -----~~~~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~ 131 (279)
T cd00953 74 -----SLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPK 131 (279)
T ss_pred -----cCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCcc
Confidence 01468889999999999999999855432221 11111222333444 55556666663
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=87.24 E-value=5.4 Score=36.14 Aligned_cols=94 Identities=18% Similarity=0.231 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCCEEEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti--------~l~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
.-++.+.+.|.+.|-|...+- ..+ .+.-.++|+++++.|++|. ++... .. |.
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~--~~~~~-~~------d~------- 145 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI--FDAEH-FF------DG------- 145 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--EeEEe-cc------cc-------
Confidence 356778899999999864432 122 2233578899999998652 22210 00 00
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
...+++.+++.+++..++|++.|. +.|..|...+..+..+++
T Consensus 146 -------~~~~~~~~~~~~~~~~~~g~~~i~-----l~DT~G~~~P~~v~~lv~ 187 (273)
T cd07941 146 -------YKANPEYALATLKAAAEAGADWLV-----LCDTNGGTLPHEIAEIVK 187 (273)
T ss_pred -------CCCCHHHHHHHHHHHHhCCCCEEE-----EecCCCCCCHHHHHHHHH
Confidence 011578889999999999999764 789999999999988885
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.22 E-value=19 Score=33.50 Aligned_cols=177 Identities=13% Similarity=0.204 Sum_probs=104.0
Q ss_pred ecCccccccChhHHHHHHHHHHhCCcee----cCCcH----HHHHHH------------------hCCchHHHHHHHHHH
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYV----STGDW----AEHLIR------------------NGPSAFKEYVEDCKQ 63 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v----~~Gtl----~E~a~~------------------qg~~~~~~yl~~~k~ 63 (240)
++-|.+-++.-+.++.-|+-|.+.+-++ ++|+. ++.+.. ++ .--+.+.+|-+
T Consensus 18 yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~--~~~e~i~~Ai~ 95 (283)
T PRK07998 18 VLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLDHG--KTFEDVKQAVR 95 (283)
T ss_pred CEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECcCC--CCHHHHHHHHH
Confidence 4556677777777888888888777322 22211 121111 22 22356778889
Q ss_pred cCCCEEEecCCcccCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 64 VGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 64 lGF~~IEISdGti~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
.||+.|=+ |||- +|.++ =+++++.|+..|.-|--|+|.--+ ++|..... ...-.||++..
T Consensus 96 ~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg------~ed~~~~~--------~~~~T~pe~a~ 159 (283)
T PRK07998 96 AGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG------KEDDHVSE--------ADCKTEPEKVK 159 (283)
T ss_pred cCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC------cccccccc--------ccccCCHHHHH
Confidence 99999999 6664 56643 346778888899999899998321 11210000 01112677665
Q ss_pred HHHHHHHHcCCcEEEEecc---ccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCcccc
Q 026320 140 RRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVNLF 208 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG~~VNLg 208 (240)
+.++ +-|+|.+=+==- |+|.. -+++.|.+++|-+.++.-=+|==++ .+ +|....|+.==..||.+
T Consensus 160 ~Fv~---~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 160 DFVE---RTGCDMLAVSIGNVHGLEDI-PRIDIPLLKRIAEVSPVPLVIHGGSGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred HHHH---HhCcCeeehhccccccCCCC-CCcCHHHHHHHHhhCCCCEEEeCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 5554 468886655432 89976 7788999999988765433333322 23 23333333333456654
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=15 Score=33.47 Aligned_cols=113 Identities=17% Similarity=0.084 Sum_probs=73.8
Q ss_pred ccChhHHHHHHHHHHhCCc-eec---CC-c----HHHHHH-------HhCCc-h--------HHHHHHHHHHcCCCEEEe
Q 026320 17 LMPKPFIEEVVKRAHQHDV-YVS---TG-D----WAEHLI-------RNGPS-A--------FKEYVEDCKQVGFDTIEL 71 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV-~v~---~G-t----l~E~a~-------~qg~~-~--------~~~yl~~~k~lGF~~IEI 71 (240)
+++++.+.+.+..+++.|+ .++ .| + ++|++. .++|+ . -++-++..|+.|.+.+-+
T Consensus 39 ~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~ 118 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNH 118 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEcc
Confidence 4566778888888888888 333 23 2 455443 12232 1 278888889999988876
Q ss_pred cCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHH
Q 026320 72 NVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRA 142 (240)
Q Consensus 72 SdGti---------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~ 142 (240)
+..|- .-+-+++.+.|+.+++.|+++.+ |.-.+.. ++.+++++.+
T Consensus 119 ~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s--g~I~GlG------------------------Et~ed~~~~l 172 (279)
T PRK08508 119 NLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCS--GGIFGLG------------------------ESWEDRISFL 172 (279)
T ss_pred cccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc--eeEEecC------------------------CCHHHHHHHH
Confidence 54332 23457888899999999987777 4433321 1467888888
Q ss_pred HHHHHcCCcEEEE
Q 026320 143 ERCLEAGADMIMI 155 (240)
Q Consensus 143 ~~dLeAGA~~Vii 155 (240)
..--+-+.+.|-+
T Consensus 173 ~~lr~L~~~svpl 185 (279)
T PRK08508 173 KSLASLSPHSTPI 185 (279)
T ss_pred HHHHcCCCCEEee
Confidence 7777888886543
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=87.09 E-value=2.7 Score=38.20 Aligned_cols=75 Identities=27% Similarity=0.311 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCcc---------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 53 AFKEYVEDCKQVG-FDTIELNVGSL---------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 53 ~~~~yl~~~k~lG-F~~IEISdGti---------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.+..+.+++.| ||+|||+-++- .-..+.-.++++.+++.- -+| +.+|-.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~p-v~vKl~---------------- 165 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVP-VIVKLT---------------- 165 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCC-EEEEcC----------------
Confidence 4556666777889 99999954322 223456678888888752 112 444421
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
| +.++.++.++...++||+.|.+=
T Consensus 166 -~---------~~~~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 166 -P---------NVTDIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred -C---------CchhHHHHHHHHHHcCCCEEEEE
Confidence 0 23456777778889999998763
|
|
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=86.99 E-value=5.7 Score=36.76 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCCEEEe-----c-CCcc------cCChhHHHHHHHHHHHcCCcccce
Q 026320 55 KEYVEDCKQVGFDTIEL-----N-VGSL------EIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEI-----S-dGti------~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
++-++..|+.|++.+-- . +-+. ..+.+++.+.|+.+++.|+++.+-
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~ 200 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTAT 200 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccce
Confidence 78889999999987631 1 1111 247889999999999999987653
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.8 Score=39.99 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHcCCCEEEec------CCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELN------VGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEIS------dGti-------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~ 119 (240)
.++.|++.+|++||..|-=- ||.. -|.-+.=.++|++|+++||...+=+ -
T Consensus 96 ~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yv-f---------------- 158 (268)
T PF09370_consen 96 DMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYV-F---------------- 158 (268)
T ss_dssp -HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE------------------
T ss_pred cHHHHHHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeee-c----------------
Confidence 58999999999999988522 2222 3455666789999999888654411 1
Q ss_pred cccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+ .+++++-.+||||.+.+=-
T Consensus 159 --------------~----~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 159 --------------N----EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp --------------S----HHHHHHHHHHT-SEEEEE-
T ss_pred --------------C----HHHHHHHHHcCCCEEEecC
Confidence 1 4677777899999988765
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=86.88 E-value=16 Score=35.02 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred HHHHHHHhCCceecC----C-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHH
Q 026320 25 EVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVK 91 (240)
Q Consensus 25 eKi~l~~~~gV~v~~----G-t----l~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~----~lI~~~~ 91 (240)
--..+++++.|+|+- | + |||.++.- +.+++..|.+.||+-|=+. || .+|.++=. +++++++
T Consensus 78 ~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiD-gS-~lp~eENI~~TkevVe~Ah 151 (345)
T cd00946 78 HVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLD-LS-EEPLEENIEICKKYLERMA 151 (345)
T ss_pred HHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEee-CC-CCCHHHHHHHHHHHHHHHH
Confidence 334688899998873 5 4 68888664 4689999999999999665 54 35655533 5667788
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH-cCCcEEEEec---ccccc-CCCC
Q 026320 92 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE-AGADMIMIDS---DDVCK-HADS 166 (240)
Q Consensus 92 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe-AGA~~ViiEa---rgi~d-~~g~ 166 (240)
..|.-|--|+|.--+ .|-+...+. .+. ...-.||++..+.+++--. -|.|.+=+== -|+|. ..-+
T Consensus 152 ~~gvsVEaElG~igg-~ed~~~~~~------~~~---~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~ 221 (345)
T cd00946 152 KINMWLEMEIGITGG-EEDGVDNSG------VDN---AELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVK 221 (345)
T ss_pred HcCCEEEEEecccCC-cccCccccc------ccc---cccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCc
Confidence 889999999998421 111100000 000 0011266666666553211 2777554432 39998 4778
Q ss_pred ccHHHHHHH
Q 026320 167 LRADIIAKV 175 (240)
Q Consensus 167 ~r~d~v~~i 175 (240)
++-+.+++|
T Consensus 222 L~~~~L~~I 230 (345)
T cd00946 222 LQPEILGEH 230 (345)
T ss_pred cCHHHHHHH
Confidence 999999999
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=86.83 E-value=12 Score=34.41 Aligned_cols=46 Identities=15% Similarity=0.374 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHcCCcccc
Q 026320 54 FKEYVEDCKQVGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IE-ISdGti-----------~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.++.++..|+.|.+.+- ++--+. ..+.++|.+.++.+++.|+++.+
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 57899999999998772 321111 35778899999999999988775
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=7.7 Score=37.09 Aligned_cols=115 Identities=16% Similarity=0.231 Sum_probs=75.7
Q ss_pred ccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc-------
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL------- 76 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg--~~~~~~yl~~~k~lGF~~I-----EISdGti------- 76 (240)
|-..-.+-+.+.+.++..+++ ++.++.=+-.|+++... .-..++.++..|+.|.+.+ |+.+-++
T Consensus 123 G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~ 202 (370)
T PRK05926 123 GCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPG 202 (370)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCC
Confidence 444334556677777777765 56655434566666432 1246899999999999654 4434333
Q ss_pred cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 77 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 77 ~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
..+.++|.+.++.+++.|+++-+ |.-++.. ++++++++.+..--+-+.+.+
T Consensus 203 ~~t~~e~l~~i~~a~~~Gi~~~s--gmi~G~g------------------------Et~edrv~~l~~Lr~Lq~~t~ 253 (370)
T PRK05926 203 RLSSQGFLEIHKTAHSLGIPSNA--TMLCYHR------------------------ETPEDIVTHMSKLRALQDKTS 253 (370)
T ss_pred CCCHHHHHHHHHHHHHcCCcccC--ceEEeCC------------------------CCHHHHHHHHHHHHhcCCccC
Confidence 34679999999999999999877 3433221 246888888877666666543
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=86.47 E-value=5.2 Score=39.99 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=67.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChh------------HHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEE------------TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~------------~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.-++.+.+.|.+.|-+...+-++-.+ .-.+.|+.+++.|++|. |+-.+-. | +
T Consensus 88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~e~~~-------D----a-- 152 (524)
T PRK12344 88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI--FDAEHFF-------D----G-- 152 (524)
T ss_pred HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE--Ecccccc-------c----c--
Confidence 455678888999999998665433222 22367888899888752 3331000 1 0
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
...|++.+++.++...++||+.|. ++|..|-..+..+.++++.+
T Consensus 153 --------~r~d~~~l~~~~~~~~~~Gad~i~-----l~DTvG~~~P~~v~~li~~l 196 (524)
T PRK12344 153 --------YKANPEYALATLKAAAEAGADWVV-----LCDTNGGTLPHEVAEIVAEV 196 (524)
T ss_pred --------ccCCHHHHHHHHHHHHhCCCCeEE-----EccCCCCcCHHHHHHHHHHH
Confidence 012688899999999999999887 88899999988888887654
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.41 E-value=13 Score=34.04 Aligned_cols=65 Identities=9% Similarity=0.175 Sum_probs=51.0
Q ss_pred hCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 026320 32 QHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 32 ~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
++++++..=|++...++.| +++|++.|++.|++.|=|= ++|.++..++++.++++|+.+.+=+..
T Consensus 89 ~~~~p~vlm~Y~N~i~~~G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 89 EIKAPIVIFTYYNPVLHYG---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred CCCCCEEEEecccHHHHhC---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECC
Confidence 3555544336777777775 9999999999999999774 678899999999999999887664433
|
|
| >PRK09989 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.33 E-value=1.4 Score=38.86 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+.+.++.++++||+.||+.. ....+ ..++-+.+++.|+++..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEEE
Confidence 789999999999999999963 33344 34567778898998653
|
|
| >smart00642 Aamy Alpha-amylase domain | Back alignment and domain information |
|---|
Probab=86.22 E-value=1.9 Score=36.45 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=37.4
Q ss_pred HHHHHHHHcCCCEEEecCCccc-----------------C-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 026320 56 EYVEDCKQVGFDTIELNVGSLE-----------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~-----------------l-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
+-+++++++||++|.++-=+-. + +.++..++|+.++++|++|+-.+-...
T Consensus 23 ~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 23 EKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 3355778899999987642111 1 237889999999999999999988743
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=86.20 E-value=11 Score=34.84 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhCCceecCCc-----H-HHHHHHhCCchHHHHHHHHHHc---C---CCEEEecCCcccCChhHHHHHHHH
Q 026320 22 FIEEVVKRAHQHDVYVSTGD-----W-AEHLIRNGPSAFKEYVEDCKQV---G---FDTIELNVGSLEIPEETLLRYVRL 89 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gt-----l-~E~a~~qg~~~~~~yl~~~k~l---G---F~~IEISdGti~l~~~~r~~lI~~ 89 (240)
.+++.+++++++|.. |.++ | .|-+-.-.++.+.++++.+.+. | .+.|-++|-.--..+.+-.++++.
T Consensus 121 ~~~~~v~~a~~~g~~-~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~ 199 (284)
T cd07942 121 IAVDGAKLVKELAAK-YPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEW 199 (284)
T ss_pred HHHHHHHHHHHhccc-ccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHH
Confidence 367788899999864 2110 1 2333334455788888888877 5 448889999988888888899998
Q ss_pred HHHc-CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCC
Q 026320 90 VKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADS 166 (240)
Q Consensus 90 ~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~ 166 (240)
+++. +-....+++..+ -.|....+...-..+++||++| ++- |+=...||
T Consensus 200 l~~~~~~~~~~~~~~H~--------------------------Hnd~G~a~AN~laA~~aG~~~i--d~~~~g~GeRaGN 251 (284)
T cd07942 200 FCRNLSRRESVIISLHP--------------------------HNDRGTGVAAAELALLAGADRV--EGTLFGNGERTGN 251 (284)
T ss_pred HHHhcCCCCCceEEEEe--------------------------cCCCchHHHHHHHHHHhCCCEE--EeeCccCCccccc
Confidence 8763 111122344433 2234556778888899999985 454 77555899
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
.-.+.+-..+...+
T Consensus 252 ~~~E~lv~~l~~~g 265 (284)
T cd07942 252 VDLVTLALNLYSQG 265 (284)
T ss_pred hhHHHHHHHHHhcC
Confidence 88887766665444
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=85.91 E-value=8.8 Score=35.03 Aligned_cols=110 Identities=17% Similarity=0.252 Sum_probs=78.7
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++.+|-|+|=+--.. ++.++-.++++.+.+.||.|+.|++-
T Consensus 117 I~ea~~~GADavLLI~~~--L~~~~l~~l~~~a~~lGle~LVEVh~---------------------------------- 160 (247)
T PRK13957 117 IREARAFGASAILLIVRI--LTPSQIKSFLKHASSLGMDVLVEVHT---------------------------------- 160 (247)
T ss_pred HHHHHHcCCCEEEeEHhh--CCHHHHHHHHHHHHHcCCceEEEECC----------------------------------
Confidence 567788999999555444 46778889999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
-+.+++.+++||..|-|-.|.+..- ++..+...+++..+|-+.+ |-|.=-+ ..+...+++. .|--|
T Consensus 161 -~~El~~a~~~ga~iiGINnRdL~t~--~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~~-~davL 228 (247)
T PRK13957 161 -EDEAKLALDCGAEIIGINTRDLDTF--QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRKL-VDAAL 228 (247)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHh-CCEEE
Confidence 2456677899999999999976433 4456667888888886655 4454422 2444445554 44333
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.80 E-value=10 Score=35.90 Aligned_cols=53 Identities=13% Similarity=0.309 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHcCCC-----EEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeeecCC
Q 026320 53 AFKEYVEDCKQVGFD-----TIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 107 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~-----~IEISdGti-------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~ 107 (240)
..++.++..|+.|.+ ..|+++-.+ .++.++|++.|+.|++.|+++-+ |.-.+.
T Consensus 145 ~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi~~~s--g~l~G~ 209 (350)
T PRK05927 145 STEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGFRSTA--TMMFGH 209 (350)
T ss_pred CHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCCCcCc--eeEEee
Confidence 467888999999997 789998544 56779999999999999998887 665544
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.78 E-value=12 Score=32.76 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHhCCce--ecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC----Ccc-c---CChhHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV----GSL-E---IPEETLLRYVRLV 90 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~--v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd----Gti-~---l~~~~r~~lI~~~ 90 (240)
+.+++|++.++++|+. +|.|+.- . ++.+.++|.+.|.+-. ||- . -+++.-.++++.+
T Consensus 101 ~e~~~~v~~a~~~Gl~~I~~v~~~~---------~----~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKLGLESVVCVNNPE---------T----SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHH---------H----HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHH
Confidence 4588999999999993 3457721 1 1234566778887532 332 2 3345555667777
Q ss_pred HHc--CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 91 KSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 91 ~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++. +..++.++|++. -+.+++.+++|||-|+|=+
T Consensus 168 r~~~~~~pvi~GggI~~---------------------------------~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 168 KKVNPDVKVLCGAGIST---------------------------------GEDVKAALELGADGVLLAS 203 (223)
T ss_pred HhccCCCEEEEECCCCC---------------------------------HHHHHHHHcCCCCEEEEeh
Confidence 763 567777777732 2455566789999988744
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=85.52 E-value=19 Score=33.43 Aligned_cols=137 Identities=12% Similarity=0.110 Sum_probs=84.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCC-ccccccccccccCCCCcccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPS-DRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~-~~d~~~~~~~~~~~~~~~~~ 132 (240)
+.+..|-+.||+-|=+..-.+++.+--+ +++++.|+..|.-|--|+|.--+. +-+. ..+. ...+
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~-e~~~~~~~~--~~~~---------- 152 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGV-EDDLSVDEE--DALY---------- 152 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCc-cCCCccccc--hhcc----------
Confidence 6678889999999998765544433222 367788888999999999984211 1110 0000 0112
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhCCCccc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG~~VNL 207 (240)
.||++..+.++ +-|+|.+=+== -|+|...-+++-|.+++|-+.++.-=++==+. .| +|....|+.==..||+
T Consensus 153 T~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 153 TDPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CCHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEe
Confidence 26777777766 56988776543 29999888999999999988775322222111 22 3333444333345666
Q ss_pred c
Q 026320 208 F 208 (240)
Q Consensus 208 g 208 (240)
+
T Consensus 230 ~ 230 (282)
T TIGR01858 230 A 230 (282)
T ss_pred C
Confidence 5
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.28 E-value=7.8 Score=35.49 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=42.5
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+.|......++.+.+-++..++. ++++.- -+. +...+.++.+.|.+.|.+.|=++|-+..
T Consensus 144 ~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 144 GMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP-------NITDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred CCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC-------CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence 45666677888999999988864 555443 111 1125778888899999999998886643
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=85.26 E-value=5.7 Score=35.18 Aligned_cols=98 Identities=8% Similarity=0.066 Sum_probs=60.2
Q ss_pred ccChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcC
Q 026320 17 LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 94 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G 94 (240)
++.+..-.+-++.|++++|.+.|| |.-|+. .+.++|++.|-+-...... -..+|+.++.
T Consensus 91 ivsP~~~~~vi~~a~~~~i~~iPG~~TptEi~-------------~a~~~Ga~~vKlFPa~~~g----g~~~lk~l~~-- 151 (212)
T PRK05718 91 IVSPGLTPPLLKAAQEGPIPLIPGVSTPSELM-------------LGMELGLRTFKFFPAEASG----GVKMLKALAG-- 151 (212)
T ss_pred EECCCCCHHHHHHHHHcCCCEeCCCCCHHHHH-------------HHHHCCCCEEEEccchhcc----CHHHHHHHhc--
Confidence 333345557888899999998888 677733 2467999999994433221 1356666655
Q ss_pred CcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 95 LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 95 ~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
++|.+... .+| + + + .+.+...|++|+..+.. +.-+++.+
T Consensus 152 --p~p~~~~~----ptG--G-------V-----------~----~~ni~~~l~ag~v~~vg-gs~L~~~~ 190 (212)
T PRK05718 152 --PFPDVRFC----PTG--G-------I-----------S----PANYRDYLALPNVLCIG-GSWMVPKD 190 (212)
T ss_pred --cCCCCeEE----EeC--C-------C-----------C----HHHHHHHHhCCCEEEEE-ChHhCCcc
Confidence 23433221 111 0 0 1 47888999999666666 66677543
|
|
| >TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917 | Back alignment and domain information |
|---|
Probab=85.23 E-value=12 Score=34.00 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEecc-ccc-cCCCCccHHHHHHHHhc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSD-DVC-KHADSLRADIIAKVIGR 178 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEar-gi~-d~~g~~r~d~v~~i~~~ 178 (240)
|.+..-+-.+-+|+||+.+||=-== .|. ...|+-|.+.+.+++..
T Consensus 187 dl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~ 233 (236)
T TIGR03581 187 DLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAI 233 (236)
T ss_pred cHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHH
Confidence 4566667777788888888874322 234 33588888888888764
|
Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=85.15 E-value=4.1 Score=37.93 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=56.0
Q ss_pred EEecCccccccChhHHHHHHHHHHhC-Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-C--Ch
Q 026320 8 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-I--PE 80 (240)
Q Consensus 8 lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-l--~~ 80 (240)
.|-|.|++.+-+++.+.+-++-+++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...|-+ + ..
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~ 180 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGE 180 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCCC
Confidence 46688899999999999999988764 44433 2 34532 1124668888899999999999987642 1 12
Q ss_pred hHHHHHHHHHHHc
Q 026320 81 ETLLRYVRLVKSA 93 (240)
Q Consensus 81 ~~r~~lI~~~~~~ 93 (240)
.+ .++|++++++
T Consensus 181 a~-~~~i~~ik~~ 192 (321)
T PRK10415 181 AE-YDSIRAVKQK 192 (321)
T ss_pred cC-hHHHHHHHHh
Confidence 23 4788888773
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=85.09 E-value=8 Score=34.97 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=39.7
Q ss_pred cccccChhHHHHHHHHHHhC-CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 026320 14 SHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 14 Ts~l~p~~~l~eKi~l~~~~-gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 76 (240)
.+....++.+.+.++-.+++ ++++..- +. +.+.+.+..+.+.+.|.|.|-++|.+.
T Consensus 133 ~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 133 MAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARAAEEAGADGLTLINTLK 190 (296)
T ss_pred ccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHHHHHcCCCEEEEECCCc
Confidence 34556678899999999988 7766641 11 112466778888999999999987544
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=85.00 E-value=7.3 Score=35.92 Aligned_cols=48 Identities=15% Similarity=0.300 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
+++++.|++||++||+=+--+. ++.+.++++.++++.+|.++|+.=-.
T Consensus 95 e~i~~~l~~Ga~rViigT~Av~--~~~~~p~~v~~~~~~~G~~~IvvsiD 142 (262)
T PLN02446 95 ENAMSYLDAGASHVIVTSYVFR--DGQIDLERLKDLVRLVGKQRLVLDLS 142 (262)
T ss_pred HHHHHHHHcCCCEEEEchHHHh--CCCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 8899999999999999443333 47889999999999999999887433
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=84.94 E-value=8.9 Score=35.17 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCEEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGt------------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.-++.+.+.|.+.|-++-.+ .+=..+.-.++|+.+++.|++| .++..+ .+
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v--~~~~~d----~~----------- 139 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV--NIYLED----WS----------- 139 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE--EEEEEe----CC-----------
Confidence 345888999999999887532 1222223446689999999763 455532 11
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.|+. .+++.+++.+++..++||+.|- ++|..|-..+..+.++++.+
T Consensus 140 ~~~r------~~~~~~~~~~~~~~~~G~~~i~-----l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 140 NGMR------DSPDYVFQLVDFLSDLPIKRIM-----LPDTLGILSPFETYTYISDM 185 (280)
T ss_pred CCCc------CCHHHHHHHHHHHHHcCCCEEE-----ecCCCCCCCHHHHHHHHHHH
Confidence 0111 2589999999999999999763 68888888888888887654
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=84.87 E-value=9.1 Score=36.33 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHhCCc-eec-CCc--H-----HH------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-
Q 026320 20 KPFIEEVVKRAHQHDV-YVS-TGD--W-----AE------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE- 77 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV-~v~-~Gt--l-----~E------------~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~- 77 (240)
.+.+...++.+++.|| +|- +|| + -| +++..|.-.+..+.+.+|+.|.+.|-||=.|++
T Consensus 45 ~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDsld~ 124 (322)
T COG2896 45 LEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDSLDP 124 (322)
T ss_pred HHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHcCCcEEEeecccCCH
Confidence 3447777777777777 333 332 2 22 223323344789999999999999999988763
Q ss_pred -----CC----hhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH
Q 026320 78 -----IP----EETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 147 (240)
Q Consensus 78 -----l~----~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 147 (240)
|. .+.=.+=|+.|.+.||. ||--.-+.-+ + +..++...++-.-+
T Consensus 125 e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kg---v-----------------------Nd~ei~~l~e~~~~ 178 (322)
T COG2896 125 EKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKG---V-----------------------NDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecC---C-----------------------CHHHHHHHHHHHhh
Confidence 22 12334567899999997 7776666422 1 23566667777779
Q ss_pred cCCcEEEEecc
Q 026320 148 AGADMIMIDSD 158 (240)
Q Consensus 148 AGA~~ViiEar 158 (240)
-|+..=+||=.
T Consensus 179 ~~~~lrfIE~m 189 (322)
T COG2896 179 RGAQLRFIELM 189 (322)
T ss_pred cCCceEEEEEe
Confidence 99999999976
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.7 Score=40.32 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=41.7
Q ss_pred ccccccChhHHHHHHHHHHhC---Cc----eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc------CC
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH---DV----YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE------IP 79 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~---gV----~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~------l~ 79 (240)
|.+..-..+.+.+.++-.|+. ++ ++.+..+.+..+. ++..-++.+.+.+.|.++||||.|..+ ++
T Consensus 197 Ggsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~--~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~ 274 (336)
T cd02932 197 GGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWD--LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVG 274 (336)
T ss_pred CCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCC--HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCC
Confidence 334444445566777777754 32 3333222211111 113445666777889999999988542 22
Q ss_pred hhHHHHHHHHHHH
Q 026320 80 EETLLRYVRLVKS 92 (240)
Q Consensus 80 ~~~r~~lI~~~~~ 92 (240)
......+.+.+++
T Consensus 275 ~~~~~~~~~~ir~ 287 (336)
T cd02932 275 PGYQVPFAERIRQ 287 (336)
T ss_pred ccccHHHHHHHHh
Confidence 3333456666665
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=6.8 Score=39.22 Aligned_cols=143 Identities=12% Similarity=0.128 Sum_probs=89.5
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCcee----c-CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v----~-~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
||++-+.-..+-+ +.++.-++.++++|-.+ | +++- ...++.+.++.+.+.+.|.+.|=|.|-.--+.
T Consensus 111 idi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-----~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~ 182 (499)
T PRK12330 111 MDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-----IHTVEGFVEQAKRLLDMGADSICIKDMAALLK 182 (499)
T ss_pred CCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC-----CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCC
Confidence 4444444333333 45666666666666533 1 2221 12334566667777888999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
+.+-.++|+.+++. +...-.+++.+ + .|...-+-.....++|||+.|=.=-.|
T Consensus 183 P~~~~~LV~~Lk~~-~~~~ipI~~H~-H-------------------------nt~GlA~An~laAieAGad~vDtai~G 235 (499)
T PRK12330 183 PQPAYDIVKGIKEA-CGEDTRINLHC-H-------------------------STTGVTLVSLMKAIEAGVDVVDTAISS 235 (499)
T ss_pred HHHHHHHHHHHHHh-CCCCCeEEEEe-C-------------------------CCCCcHHHHHHHHHHcCCCEEEeeccc
Confidence 99999999999874 10012244432 1 122334667777899999964333348
Q ss_pred cccCCCCccHHHHHHHHhccCCC
Q 026320 160 VCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 160 i~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
+=...|+..++.+-..++..+.+
T Consensus 236 lg~~aGn~atE~vv~~L~~~g~~ 258 (499)
T PRK12330 236 MSLGPGHNPTESLVEMLEGTGYT 258 (499)
T ss_pred ccccccchhHHHHHHHHHhcCCC
Confidence 87778988888777777666643
|
|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=84.69 E-value=7.8 Score=35.75 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=49.0
Q ss_pred HHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 59 EDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 59 ~~~k~lGF~~IEISd----------Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
..+.+.|+|.|=|.| .|++++-++.....+.+++ |.++..- -.|=.|+.+-
T Consensus 30 ~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~R---------ga~~~~v----v~DmPf~sy~------ 90 (261)
T PF02548_consen 30 RIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRR---------GAPNAFV----VADMPFGSYQ------ 90 (261)
T ss_dssp HHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHH---------H-TSSEE----EEE--TTSST------
T ss_pred HHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHh---------cCCCceE----EecCCccccc------
Confidence 455677888888864 6889999999887777766 3332210 1122233321
Q ss_pred cccccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 026320 129 TEYVEDVDLLIRRAERCLE-AGADMIMIDSD 158 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLe-AGA~~ViiEar 158 (240)
.++++.++.+.|.+. +||+.|-+|+.
T Consensus 91 ----~s~e~av~nA~rl~ke~GadaVKlEGg 117 (261)
T PF02548_consen 91 ----ASPEQAVRNAGRLMKEAGADAVKLEGG 117 (261)
T ss_dssp ----SSHHHHHHHHHHHHHTTT-SEEEEEBS
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEeccc
Confidence 268999999999999 99999999983
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >PRK09997 hydroxypyruvate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=84.57 E-value=1.4 Score=38.86 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=35.2
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 46 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 46 a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+.+. .+++.++.+++.||+.||+.. ...+ +..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~~---~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYDY---DIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCCC---CHHHHHHHHHHcCCcEEE
Confidence 34455 799999999999999999954 2222 345666677789999743
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=84.56 E-value=12 Score=33.38 Aligned_cols=99 Identities=16% Similarity=0.206 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~-l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
...+..+...+.|++.+=|-|=+-. .....-.++|+++++. .++-+..+. |
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~-----~~~pv~~~G-----------------------G 82 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET-----VFIPLTVGG-----------------------G 82 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh-----cCCCEEEEC-----------------------C
Confidence 4556666777899999988776644 2455556788888773 112222111 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
..+ .+.+++.+.+||+.|++ ++.... +++++.++.+..|.+++++--+
T Consensus 83 i~s----~~d~~~~~~~Ga~~viv-gt~~~~-----~p~~~~~~~~~~~~~~iv~slD 130 (254)
T TIGR00735 83 IKS----IEDVDKLLRAGADKVSI-NTAAVK-----NPELIYELADRFGSQCIVVAID 130 (254)
T ss_pred CCC----HHHHHHHHHcCCCEEEE-ChhHhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 123 67777888999999999 555544 3678899988888888887554
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.47 E-value=7 Score=36.82 Aligned_cols=133 Identities=17% Similarity=0.252 Sum_probs=80.5
Q ss_pred ccccChhHHHHHHHHHHhCCc-eecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 026320 15 HSLMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~gV-~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~ 92 (240)
..+++.+.+.++...+.+.|+ .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|.|. ++. +..++.++
T Consensus 73 ~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~----e~l~~Lke 144 (345)
T PRK15108 73 ERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSE----SQAQRLAN 144 (345)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCH----HHHHHHHH
Confidence 345677778888999999999 55554 34221 11111246666777788887655 88885 443 34566778
Q ss_pred cCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHH
Q 026320 93 AGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADII 172 (240)
Q Consensus 93 ~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v 172 (240)
+|+... ++.- |+ ++.+.+.+.+ ..+.+++++.+++..++|- -+-+-+|+-- |+..+|.+
T Consensus 145 AGld~~---n~~l---eT----~p~~f~~I~~-------~~~~~~rl~~i~~a~~~G~---~v~sg~i~Gl-gEt~ed~v 203 (345)
T PRK15108 145 AGLDYY---NHNL---DT----SPEFYGNIIT-------TRTYQERLDTLEKVRDAGI---KVCSGGIVGL-GETVKDRA 203 (345)
T ss_pred cCCCEE---eecc---cc----ChHhcCCCCC-------CCCHHHHHHHHHHHHHcCC---ceeeEEEEeC-CCCHHHHH
Confidence 887732 2211 01 1111111111 1367999999999999995 2233345654 88888988
Q ss_pred HHHH
Q 026320 173 AKVI 176 (240)
Q Consensus 173 ~~i~ 176 (240)
+-+.
T Consensus 204 ~~~~ 207 (345)
T PRK15108 204 GLLL 207 (345)
T ss_pred HHHH
Confidence 8775
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=25 Score=33.11 Aligned_cols=116 Identities=23% Similarity=0.275 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhCCceec-----CCcHHHH--------------------HHHhC--CchHHHHHH---HHHHcCCCEEEe
Q 026320 22 FIEEVVKRAHQHDVYVS-----TGDWAEH--------------------LIRNG--PSAFKEYVE---DCKQVGFDTIEL 71 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~-----~Gtl~E~--------------------a~~qg--~~~~~~yl~---~~k~lGF~~IEI 71 (240)
.+++.++.+|+||-.++ +|.+.+. ++... ..-+++|.+ .|++.|||.|||
T Consensus 82 ~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVei 161 (337)
T PRK13523 82 GLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEI 161 (337)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 68889999999998653 2433210 00000 012444544 566779999999
Q ss_pred cCCc-------c-c-C---------ChhHHHHH----HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 72 NVGS-------L-E-I---------PEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 72 SdGt-------i-~-l---------~~~~r~~l----I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.-|- + + . +.+.|.|+ |+.+++. +-.-+++|-...+.. +
T Consensus 162 h~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~---~~~~v~vRis~~d~~------------~----- 221 (337)
T PRK13523 162 HGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV---WDGPLFVRISASDYH------------P----- 221 (337)
T ss_pred ccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh---cCCCeEEEecccccC------------C-----
Confidence 8772 1 1 1 34555554 4444443 111256654322211 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+--++++.++.++..-++|+|+|-|=++
T Consensus 222 -~G~~~~e~~~i~~~l~~~gvD~i~vs~g 249 (337)
T PRK13523 222 -GGLTVQDYVQYAKWMKEQGVDLIDVSSG 249 (337)
T ss_pred -CCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 0114688888888888899999998554
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=84.17 E-value=21 Score=32.15 Aligned_cols=121 Identities=20% Similarity=0.168 Sum_probs=71.2
Q ss_pred ChhHHHHHHHHHHhCCc-eecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------------ccCChhH
Q 026320 19 PKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEET 82 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV-~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt-------------i~l~~~~ 82 (240)
|++.+.+-+..+++... .+.-| +.=|+... .+.+.+ +++.|||+-|. +--.++.
T Consensus 53 ~~~~i~~e~~~~~~~~~vivnv~~~~~ee~~~~---------a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~ 122 (231)
T TIGR00736 53 FNSYIIEQIKKAESRALVSVNVRFVDLEEAYDV---------LLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKEL 122 (231)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEecCCHHHHHHH---------HHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHH
Confidence 45677777777764443 22223 22222211 122223 79999999887 3336667
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
-.++++.+++.+ +| +.+|-... | +....++.++...++||+.|.|+++ |.
T Consensus 123 l~~iv~av~~~~---~P-VsvKiR~~------------------~------~~~~~~~~a~~l~~aGad~i~Vd~~--~~ 172 (231)
T TIGR00736 123 LKEFLTKMKELN---KP-IFVKIRGN------------------C------IPLDELIDALNLVDDGFDGIHVDAM--YP 172 (231)
T ss_pred HHHHHHHHHcCC---Cc-EEEEeCCC------------------C------CcchHHHHHHHHHHcCCCEEEEeeC--CC
Confidence 778888888543 23 66664321 1 1234567788888999999999753 32
Q ss_pred CCCCccHHHHHHHHhcc
Q 026320 163 HADSLRADIIAKVIGRL 179 (240)
Q Consensus 163 ~~g~~r~d~v~~i~~~~ 179 (240)
..+....+.|.++.+.+
T Consensus 173 g~~~a~~~~I~~i~~~~ 189 (231)
T TIGR00736 173 GKPYADMDLLKILSEEF 189 (231)
T ss_pred CCchhhHHHHHHHHHhc
Confidence 22225566676666544
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=84.04 E-value=4.7 Score=35.69 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...+..+.+.+-|++.|||.- ..+...+.|+++++.. |++-+ |+ |..++
T Consensus 21 ~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~----~~~~v-------GA------GTVl~--------- 69 (204)
T TIGR01182 21 DALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEV----PDALI-------GA------GTVLN--------- 69 (204)
T ss_pred HHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------EE------EeCCC---------
Confidence 455667888999999999976 4466778999998741 22222 10 22233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 70 ------~~~a~~a~~aGA~FivsP~ 88 (204)
T TIGR01182 70 ------PEQLRQAVDAGAQFIVSPG 88 (204)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 6788999999999998544
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.03 E-value=9.4 Score=35.79 Aligned_cols=124 Identities=19% Similarity=0.254 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhCCceecC---CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----------CChhHHHHH
Q 026320 21 PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----------IPEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~---Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----------l~~~~r~~l 86 (240)
+.+..-=++...-+++|.- .||-+ + . .+-+.++.+.+.|.-.|-|-|-... +|.++.++-
T Consensus 65 e~~~~vrrI~~a~~lPv~vD~dtGfG~-~--~---nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~r 138 (289)
T COG2513 65 EVLADARRITDAVDLPVLVDIDTGFGE-A--L---NVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDR 138 (289)
T ss_pred HHHHHHHHHHhhcCCceEEeccCCCCc-H--H---HHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHH
Confidence 3444445566666776663 24655 2 1 5677888899999998888776664 888888888
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS 166 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~ 166 (240)
|+.+++. ...++|-+-- .-|. +. ..-.++-|++++..+|||||.|-.|+. ..
T Consensus 139 IkAa~~a--~~~~~fvi~A-------RTda----------~~---~~~ld~AI~Ra~AY~eAGAD~if~~al------~~ 190 (289)
T COG2513 139 IKAAVEA--RRDPDFVIIA-------RTDA----------LL---VEGLDDAIERAQAYVEAGADAIFPEAL------TD 190 (289)
T ss_pred HHHHHHh--ccCCCeEEEe-------ehHH----------HH---hccHHHHHHHHHHHHHcCCcEEccccC------CC
Confidence 8888875 2225565521 1111 11 112688999999999999999999996 11
Q ss_pred ccHHHHHHHHhccC
Q 026320 167 LRADIIAKVIGRLG 180 (240)
Q Consensus 167 ~r~d~v~~i~~~~~ 180 (240)
.+.+.++.+.++
T Consensus 191 --~e~i~~f~~av~ 202 (289)
T COG2513 191 --LEEIRAFAEAVP 202 (289)
T ss_pred --HHHHHHHHHhcC
Confidence 556666666555
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=83.93 E-value=3.9 Score=35.97 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+...+..+.+.+-|+.+|||.--| +...+.|+.+++. .|++-+ |+ |..++
T Consensus 20 ~~a~~~~~al~~gGi~~iEiT~~t-----~~a~~~I~~l~~~----~p~~~v-------GA------GTV~~-------- 69 (196)
T PF01081_consen 20 EDAVPIAEALIEGGIRAIEITLRT-----PNALEAIEALRKE----FPDLLV-------GA------GTVLT-------- 69 (196)
T ss_dssp GGHHHHHHHHHHTT--EEEEETTS-----TTHHHHHHHHHHH----HTTSEE-------EE------ES--S--------
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----ccHHHHHHHHHHH----CCCCee-------EE------EeccC--------
Confidence 356677788899999999997654 4567899988774 233333 10 22222
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 70 -------~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 70 -------AEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp -------HHHHHHHHHHT-SEEEESS
T ss_pred -------HHHHHHHHHcCCCEEECCC
Confidence 7899999999999999765
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.82 E-value=28 Score=32.32 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=73.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
-+.+..|-+.||+-|=+.--.+ |.++= +++++.|+..|.-|--|+|.=-+ .+-+...+.. ....
T Consensus 87 ~e~i~~ai~~GftSVMiDgS~l--p~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg-~e~~~~~~~~-~~~~-------- 154 (284)
T PRK12737 87 LDDIKKKVRAGIRSVMIDGSHL--SFEENIAIVKEVVEFCHRYDASVEAELGRLGG-QEDDLVVDEK-DAMY-------- 154 (284)
T ss_pred HHHHHHHHHcCCCeEEecCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC-ccCCcccccc-cccC--------
Confidence 3677888999999999875554 44443 36778888899999999998421 1111000000 0011
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccC
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~ 180 (240)
.||++..+.+++ -|+|.+-+== -|+|...-+++-+.+++|-+.++
T Consensus 155 --T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~ 202 (284)
T PRK12737 155 --TNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS 202 (284)
T ss_pred --CCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC
Confidence 267777777764 6888776643 39998888899999999988665
|
|
| >TIGR01501 MthylAspMutase methylaspartate mutase, S subunit | Back alignment and domain information |
|---|
Probab=83.76 E-value=4.8 Score=33.39 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHH
Q 026320 134 DVDLLIRRAERCLE 147 (240)
Q Consensus 134 ~~~~~i~~~~~dLe 147 (240)
++++.++.++++|+
T Consensus 120 ~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 120 PPEVVIADLKKDLN 133 (134)
T ss_pred CHHHHHHHHHHHhc
Confidence 47889999998875
|
This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=83.35 E-value=9.6 Score=34.74 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCEEEecCCccc--------CC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLE--------IP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~--------l~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
+=++.+.+.|.+.|-+...+-+ .+ .+.-.+.|+.+++.|++|.--+..-+.. ...
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-----~~~-------- 143 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGC-----PYE-------- 143 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-----CCC--------
Confidence 3478888999999888654433 12 2445567999999999865433332211 000
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+.-+++.+++.++...++||+.|- +.|..|...+..+.+++..+
T Consensus 144 -------~~~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 187 (274)
T cd07938 144 -------GEVPPERVAEVAERLLDLGCDEIS-----LGDTIGVATPAQVRRLLEAV 187 (274)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCCEEE-----ECCCCCccCHHHHHHHHHHH
Confidence 011589999999999999998663 67888888888888887644
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.34 E-value=33 Score=31.84 Aligned_cols=135 Identities=17% Similarity=0.287 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHH----HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~l----I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.++.|-+.||+.|=+..-. +|.++-.++ ++.++..|..|--|+|.- +..+. +...+. . ...
T Consensus 82 e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~v-g~~e~----~~~~~~--~-----~~~ 147 (283)
T PRK08185 82 EDVMRAIRCGFTSVMIDGSL--LPYEENVALTKEVVELAHKVGVSVEGELGTI-GNTGT----SIEGGV--S-----EII 147 (283)
T ss_pred HHHHHHHHcCCCEEEEeCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEEEeec-cCccc----cccccc--c-----ccc
Confidence 45677788999999886554 566665554 555567899999999882 22111 100000 0 000
Q ss_pred ccCHHHHHHHHHHHHHc-CCcEEEEec---cccccC--CCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-C
Q 026320 132 VEDVDLLIRRAERCLEA-GADMIMIDS---DDVCKH--ADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-P 203 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeA-GA~~ViiEa---rgi~d~--~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG-~ 203 (240)
..| .++++++.+. |+|++-+== -|+|.. .-+++-+.+.+|.+.++.--++-=.. .+..|.-=.-++| .
T Consensus 148 ~t~----peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~ 223 (283)
T PRK08185 148 YTD----PEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVG 223 (283)
T ss_pred CCC----HHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCe
Confidence 114 4555666666 999988733 488977 56788999999987765433333222 2333333233444 3
Q ss_pred Ccccc
Q 026320 204 KVNLF 208 (240)
Q Consensus 204 ~VNLg 208 (240)
.||++
T Consensus 224 KiNi~ 228 (283)
T PRK08185 224 KINIS 228 (283)
T ss_pred EEEeC
Confidence 46664
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=83.28 E-value=8.3 Score=37.41 Aligned_cols=126 Identities=22% Similarity=0.315 Sum_probs=86.4
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcccCChhH
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~-~~~yl~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
.|+-+=||+||-.+++++.|++-++.++++=- ....-.|+.+--+|.. =.+.++.+++.||+ -||=|--++.++.
T Consensus 87 ~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvN--RiSlGVQsf~~~~ 162 (416)
T COG0635 87 EVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVN--RISLGVQSFNDEV 162 (416)
T ss_pred eEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCC--EEEeccccCCHHH
Confidence 46677799999999999999999999987641 0011134444334443 34677888999999 5666777766554
Q ss_pred ------------HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCC
Q 026320 83 ------------LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGA 150 (240)
Q Consensus 83 ------------r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA 150 (240)
-...++.+++.||.-+. +-.-.+ .| -+|.+.+.+..+..++.|.
T Consensus 163 lk~lgR~h~~~~~~~a~~~~~~~g~~~in-~DLIyg----------------lP-------~QT~~~~~~~l~~a~~l~p 218 (416)
T COG0635 163 LKALGRIHDEEEAKEAVELARKAGFTSIN-IDLIYG----------------LP-------GQTLESLKEDLEQALELGP 218 (416)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCCcEE-EEeecC----------------CC-------CCCHHHHHHHHHHHHhCCC
Confidence 44567777777666332 222111 12 2368999999999999999
Q ss_pred cEEEEec
Q 026320 151 DMIMIDS 157 (240)
Q Consensus 151 ~~ViiEa 157 (240)
++|=+.+
T Consensus 219 dhis~y~ 225 (416)
T COG0635 219 DHLSLYS 225 (416)
T ss_pred CEEEEee
Confidence 9998877
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=83.22 E-value=23 Score=33.94 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=41.2
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+.|......++.+.+-++..++. ++++.. .- +...+.+..+.+.+.|.+.|=+.|-+..
T Consensus 144 ~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p--------~~~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (420)
T PRK08318 144 GMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP--------NITDIREPARAAKRGGADAVSLINTINS 205 (420)
T ss_pred CCcccccCCHHHHHHHHHHHHhccCCcEEEEcCC--------CcccHHHHHHHHHHCCCCEEEEecccCc
Confidence 45677778889999999999875 454442 21 1124667777888999999987666654
|
|
| >smart00481 POLIIIAc DNA polymerase alpha chain like domain | Back alignment and domain information |
|---|
Probab=83.20 E-value=2.9 Score=29.45 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 51 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 51 ~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
....++|++.|++.|+++|=|+|=.---.. .++-+.+++.|++|++
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347899999999999999999997622222 2455666778998887
|
DNA polymerase alpha chain like domain, incl. family of hypothetical proteins |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=83.19 E-value=39 Score=31.37 Aligned_cols=138 Identities=13% Similarity=0.143 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.+..|-++||+-|=+.--.+++.+-.+ +++++.|+..|.-|--|+|.=-+ .+-+...+. . ...-.
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg-~e~~~~~~~---~--------~~~~T 155 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG-QEDDLQVDE---A--------DALYT 155 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC-cccCccccc---c--------cccCC
Confidence 5677788999999999755544433222 36778888889999999998421 111100000 0 00112
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 208 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG-~~VNLg 208 (240)
||++..+.++ +-|+|..-+== -|+|...-+++.|.+++|-+.++.--++==+. .|..|.-=.-+.| ..||++
T Consensus 156 ~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 156 DPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred CHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 6666555555 46888776643 29999888999999999988765322332222 2333332223344 456765
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=83.19 E-value=33 Score=32.16 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHcCCcEEEE
Q 026320 134 DVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~Vii 155 (240)
++++.++.+++.-++|+|+|-+
T Consensus 222 ~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 222 TWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe
Confidence 5788888888888899999987
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=83.12 E-value=17 Score=33.44 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=79.7
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.++.|-+.||+.|=+..-.. |.++- .++++.++..|..|--|+|.- + .++|...+.. -.
T Consensus 88 e~i~~ai~~Gf~sVmid~s~l--~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~-g-----g~ed~~~g~~--------~~ 151 (282)
T TIGR01859 88 ESCIKAIKAGFSSVMIDGSHL--PFEENLALTKKVVEIAHAKGVSVEAELGTL-G-----GIEDGVDEKE--------AE 151 (282)
T ss_pred HHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHHHHHHHHHcCCEEEEeeCCC-c-----Cccccccccc--------cc
Confidence 466677788999998876665 44433 356666778898888888772 1 1222111100 00
Q ss_pred ccCHHHHHHHHHHHHH-cCCcEEEEe-c--cccccCCCCccHHHHHHHHhccCCCceEEec-CCchhHHHHHHHhCC-Cc
Q 026320 132 VEDVDLLIRRAERCLE-AGADMIMID-S--DDVCKHADSLRADIIAKVIGRLGLEKTMFEA-TNPRTSEWFIRRYGP-KV 205 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLe-AGA~~ViiE-a--rgi~d~~g~~r~d~v~~i~~~~~~~~lifEA-P~k~qQ~~~I~~fG~-~V 205 (240)
..||++ ++++.+ .|+|++-+= | -|+|.....+.-+.+.+|.+.+++--++-=+ -.+..+.--+.+.|. .|
T Consensus 152 ~t~~ee----a~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 152 LADPDE----AEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKI 227 (282)
T ss_pred cCCHHH----HHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEE
Confidence 125444 455554 699998864 2 3889888899999999998877533232221 233344443444454 46
Q ss_pred ccc
Q 026320 206 NLF 208 (240)
Q Consensus 206 NLg 208 (240)
|++
T Consensus 228 Nv~ 230 (282)
T TIGR01859 228 NID 230 (282)
T ss_pred EEC
Confidence 665
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=82.97 E-value=16 Score=38.02 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=85.9
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++.+|=|+|=+--..+ +.++..++++.+++.||.|+.|++-
T Consensus 126 I~ea~~~GADavLLI~~~L--~~~~l~~l~~~a~~lGme~LvEvh~---------------------------------- 169 (695)
T PRK13802 126 IWEARAHGADLVLLIVAAL--DDAQLKHLLDLAHELGMTVLVETHT---------------------------------- 169 (695)
T ss_pred HHHHHHcCCCEeehhHhhc--CHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 6789999999998877766 4778899999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
-+.+++.+++||..|-|=.|.+..- ++..+.-.+|+..+|-+.+ |-|.=-+ ..+...+++.|.|-=|
T Consensus 170 -~~el~~a~~~ga~iiGINnRdL~tf--~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davL 238 (695)
T PRK13802 170 -REEIERAIAAGAKVIGINARNLKDL--KVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVL 238 (695)
T ss_pred -HHHHHHHHhCCCCEEEEeCCCCccc--eeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEE
Confidence 2456678999999999999966332 4446667778888886655 4455433 4677788888877666
|
|
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=82.90 E-value=5.6 Score=35.93 Aligned_cols=68 Identities=16% Similarity=0.062 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCH
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDV 135 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~ 135 (240)
...+.+...|||.|-|.-=--.++.++...+|+.++..|..++--+-- .|
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~----------~~-------------------- 73 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW----------NE-------------------- 73 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC----------CC--------------------
Confidence 455667789999999999999999999999999999887665432211 11
Q ss_pred HHHHHHHHHHHHcCCcEEEEe
Q 026320 136 DLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 136 ~~~i~~~~~dLeAGA~~ViiE 156 (240)
-..+++.||+||+-||+=
T Consensus 74 ---~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 74 ---PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred ---HHHHHHHhcCCCCEEEec
Confidence 245688899999999973
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=82.89 E-value=2.3 Score=40.04 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=67.4
Q ss_pred ccccChhHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHH---HHHHHHcCCCEEEecCCcccCC-----hh
Q 026320 15 HSLMPKPFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEY---VEDCKQVGFDTIELNVGSLEIP-----EE 81 (240)
Q Consensus 15 s~l~p~~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~y---l~~~k~lGF~~IEISdGti~l~-----~~ 81 (240)
|..-....+.|.|+-.|+. +|++++..+.+- | ...+++ .+.+.+.|+|.|+||.|+...+ ..
T Consensus 187 slenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~----G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~ 261 (337)
T PRK13523 187 SPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPG----G-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG 261 (337)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC----C-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc
Confidence 3443445666777666665 345554323221 2 134444 4555556999999999985321 22
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEecccc
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDV 160 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEargi 160 (240)
-...+.+.+++. +++ +..-+| ... | .+.+++.|+.| ||+|++ +|++
T Consensus 262 ~~~~~~~~ik~~-------~~i--pVi~~G--------~i~-----------~----~~~a~~~l~~g~~D~V~~-gR~~ 308 (337)
T PRK13523 262 YQVPFAEHIREH-------ANI--ATGAVG--------LIT-----------S----GAQAEEILQNNRADLIFI-GREL 308 (337)
T ss_pred ccHHHHHHHHhh-------cCC--cEEEeC--------CCC-----------C----HHHHHHHHHcCCCChHHh-hHHH
Confidence 134556666553 111 111111 111 2 36677789887 899877 5543
Q ss_pred ccCCCCccHHHHHHHHhccCCC
Q 026320 161 CKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
.- +++++.++.+.+..+
T Consensus 309 ia-----dP~~~~k~~~~~~~~ 325 (337)
T PRK13523 309 LR-----NPYFPRIAAKELGFE 325 (337)
T ss_pred Hh-----CccHHHHHHHHcCCC
Confidence 32 356677777666643
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=82.43 E-value=11 Score=34.35 Aligned_cols=147 Identities=20% Similarity=0.255 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhCCce---e-----cC-CcH--HHHHHHh-C-Cc-----hHHHH-HHHHHHcCCCEEEecCCcccCChhH
Q 026320 22 FIEEVVKRAHQHDVY---V-----ST-GDW--AEHLIRN-G-PS-----AFKEY-VEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~---v-----~~-Gtl--~E~a~~q-g-~~-----~~~~y-l~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
...+-...|.++|.. | |. |.+ +..+-.. + |= -+++| +.+++..|=|+|=+-... ++.+.
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~--L~~~~ 146 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTEPKFFGGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAI--LSDDQ 146 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE--SCCCHHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGG--SGHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECCCCCCCCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHh--CCHHH
Confidence 466677788888762 2 23 332 2222221 1 10 03344 678999999999887654 55677
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
..++++.+++.||.++.|++- -+.+++.+++||..|-|=.|.+-.
T Consensus 147 l~~l~~~a~~lGle~lVEVh~-----------------------------------~~El~~al~~~a~iiGINnRdL~t 191 (254)
T PF00218_consen 147 LEELLELAHSLGLEALVEVHN-----------------------------------EEELERALEAGADIIGINNRDLKT 191 (254)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-----------------------------------HHHHHHHHHTT-SEEEEESBCTTT
T ss_pred HHHHHHHHHHcCCCeEEEECC-----------------------------------HHHHHHHHHcCCCEEEEeCccccC
Confidence 789999999999999999876 245667789999999999996533
Q ss_pred CCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCCccc
Q 026320 163 HADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 163 ~~g~~r~d~v~~i~~~~~~~~-lifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
- ++..+...+++..+|.+. +|-|.=-+ ..+...+++.|.|-=|
T Consensus 192 f--~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davL 236 (254)
T PF00218_consen 192 F--EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVL 236 (254)
T ss_dssp C--CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEE
T ss_pred c--ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEE
Confidence 2 344556677888888554 44555433 4677777777776544
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=82.29 E-value=5.4 Score=36.39 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=51.3
Q ss_pred HHHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 60 DCKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 60 ~~k~lGF~~IEISdG----------ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.+.||++|=+.|+ +..++.++.+..++.+.+ +.+.+. + --|-.|+.+.
T Consensus 27 l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r---------~~~~p~--v--iaD~~fg~y~------- 86 (254)
T cd06557 27 LADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRR---------GAPRAL--V--VADMPFGSYQ------- 86 (254)
T ss_pred HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHh---------cCCCCe--E--EEeCCCCccc-------
Confidence 345679999976544 346888999998888776 222220 0 0111122222
Q ss_pred ccccCHHHHHHHHHHHHH-cCCcEEEEecc
Q 026320 130 EYVEDVDLLIRRAERCLE-AGADMIMIDSD 158 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLe-AGA~~ViiEar 158 (240)
.++++.++.+.+.++ +||+.|-||..
T Consensus 87 ---~~~~~av~~a~r~~~~aGa~aVkiEd~ 113 (254)
T cd06557 87 ---TSPEQALRNAARLMKEAGADAVKLEGG 113 (254)
T ss_pred ---CCHHHHHHHHHHHHHHhCCeEEEEcCc
Confidence 258999999999999 99999999984
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=3.2 Score=37.17 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 26 VVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 26 Ki~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
-++.+.+++| .+.-+.=.| ..-+..+.+.+-|+++|||.--| ..-.+.|+.+++ +++.+
T Consensus 8 ~~~~l~~~~vi~Vvr~~~~~--------~a~~~~~al~~gGi~~iEiT~~t-----p~a~~~i~~l~~-------~~~~~ 67 (222)
T PRK07114 8 VLTAMKATGMVPVFYHADVE--------VAKKVIKACYDGGARVFEFTNRG-----DFAHEVFAELVK-------YAAKE 67 (222)
T ss_pred HHHHHHhCCEEEEEEcCCHH--------HHHHHHHHHHHCCCCEEEEeCCC-----CcHHHHHHHHHH-------HHHhh
Confidence 3466678888 444454333 34456678899999999997644 334456666654 33333
Q ss_pred cCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 105 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 105 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++.--+|+ |..++ .+++++.++|||++++-=+
T Consensus 68 ~p~~~vGa------GTVl~---------------~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 68 LPGMILGV------GSIVD---------------AATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCCeEEee------EeCcC---------------HHHHHHHHHcCCCEEECCC
Confidence 33222331 22233 6888999999999999755
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.21 E-value=19 Score=35.70 Aligned_cols=96 Identities=24% Similarity=0.322 Sum_probs=69.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCC--------h----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIP--------E----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~--------~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
..+-++.+.+.|.+.|-+...+=++- . +.-.+.|+.+++.|++| +|+..+..
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v--~~~~ed~~-------------- 138 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV--ELSGEDAS-------------- 138 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEeeCC--------------
Confidence 35568889999999999987665442 2 23345678888888764 44442210
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
..+++.+++.++...++||+.|. ++|..|-..+..+.+++..+-
T Consensus 139 ----------r~~~~~l~~~~~~~~~~Ga~~i~-----l~DTvG~~~P~~~~~lv~~l~ 182 (488)
T PRK09389 139 ----------RADLDFLKELYKAGIEAGADRIC-----FCDTVGILTPEKTYELFKRLS 182 (488)
T ss_pred ----------CCCHHHHHHHHHHHHhCCCCEEE-----EecCCCCcCHHHHHHHHHHHH
Confidence 12578889999999999999864 689999999998888886653
|
|
| >TIGR00587 nfo apurinic endonuclease (APN1) | Back alignment and domain information |
|---|
Probab=82.12 E-value=23 Score=31.89 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHcCCcccceeeeecCCCCCC-CccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP-SDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~------l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg-~~~d~~~~~~~~~~ 125 (240)
.+..-+++++++|++++||--..=. ++.++..++.+.+.++++.+.+ +.+..+.. +. +..|+.
T Consensus 12 ~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~Hapy~-iNlas~~~~-------- 81 (274)
T TIGR00587 12 GLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQI-VLVHAPYL-INLASPDEE-------- 81 (274)
T ss_pred CHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcc-eeccCCee-eecCCCCHH--------
Confidence 5667778889999999999444332 4455554454556777665322 23321111 10 011110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCC----ccHHHHHHHHhccCCCceEEec---------CCch
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADS----LRADIIAKVIGRLGLEKTMFEA---------TNPR 192 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~----~r~d~v~~i~~~~~~~~lifEA---------P~k~ 192 (240)
-...+++.+.+.++.+-+-||..|.+..--..+...+ .-.+.+.++++...-=+|..|- ..+.
T Consensus 82 ----~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~ 157 (274)
T TIGR00587 82 ----KEEKSLDVLDEELKRCELLGIMLYNFHPGSALKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFE 157 (274)
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHH
Confidence 1123467777777777788999999987322221000 0112233344322223588883 2566
Q ss_pred hHHHHHHHhC--CCcccccCCCCc
Q 026320 193 TSEWFIRRYG--PKVNLFVDHSQV 214 (240)
Q Consensus 193 qQ~~~I~~fG--~~VNLgI~~~dV 214 (240)
+-..+++.++ |++-+.+|..++
T Consensus 158 el~~ll~~~~~~~~lg~~lDt~H~ 181 (274)
T TIGR00587 158 ELAYIIKVIVDKRRIGVCLDTCHF 181 (274)
T ss_pred HHHHHHHhcCCCCceEEEEEhhhH
Confidence 6789999998 444333554443
|
All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=15 Score=32.60 Aligned_cols=99 Identities=18% Similarity=0.230 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~-l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
...+..+.+.+.|++.+=|-|=+-+ .....-.++|+++++. + .+-+..+. |
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---~--~ipv~~~G-----------------------G 82 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ---V--FIPLTVGG-----------------------G 82 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh---C--CCCEEeeC-----------------------C
Confidence 4555666677899999988877753 3445556788888773 1 11121110 1
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
..+ .+.+++.+++||+.|++ +++.+. +++.+.++.+.+|.+++++=.+
T Consensus 83 i~s----~~~~~~~l~~Ga~~Vii-gt~~l~-----~p~~~~ei~~~~g~~~iv~slD 130 (253)
T PRK02083 83 IRS----VEDARRLLRAGADKVSI-NSAAVA-----NPELISEAADRFGSQCIVVAID 130 (253)
T ss_pred CCC----HHHHHHHHHcCCCEEEE-ChhHhh-----CcHHHHHHHHHcCCCCEEEEEE
Confidence 112 56777778899999998 444433 3678999999888888887665
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=81.88 E-value=27 Score=32.43 Aligned_cols=183 Identities=15% Similarity=0.182 Sum_probs=106.8
Q ss_pred EecCccccccChhHHHHHHHHHHhCCceec----CCc--H----------HHHHHHhC----C-------chHHHHHHHH
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGD--W----------AEHLIRNG----P-------SAFKEYVEDC 61 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV~v~----~Gt--l----------~E~a~~qg----~-------~~~~~yl~~~ 61 (240)
+++-|.+-+++-+.++.-|+-+.+.+.++. +|+ + +..+..+- | ..=-+.+..|
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~a 96 (285)
T PRK07709 17 KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEA 96 (285)
T ss_pred CceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHH
Confidence 356667777777777777777777665432 232 1 11111111 0 0112566678
Q ss_pred HHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 62 KQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 62 k~lGF~~IEISdGti~l~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
-++||+-|=+.--.+++.+-. =+++++.|+..|.-|--|+|.=-+ .+|..... . ..-.||++..
T Consensus 97 i~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg------~ed~~~~~---~-----~~yT~peeA~ 162 (285)
T PRK07709 97 IDAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGG------QEDDVIAE---G-----VIYADPAECK 162 (285)
T ss_pred HHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC------ccCCcccc---c-----ccCCCHHHHH
Confidence 889999998865554433322 236778888899999999998421 11210000 0 0012676666
Q ss_pred HHHHHHHHcCCcEEEEec---cccccCCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhC-CCcccc
Q 026320 140 RRAERCLEAGADMIMIDS---DDVCKHADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYG-PKVNLF 208 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG-~~VNLg 208 (240)
+.++ +-|+|.+-+== -|.|...-+++.+.+++|-+.++.--++==+. .|..|.--..++| ..||.+
T Consensus 163 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 163 HLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred HHHH---HhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 6665 35999877633 28999888999999999988776332332222 3444444334444 456665
|
|
| >COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=81.82 E-value=9.1 Score=35.48 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+..-.+..|+-|-++|-+.-| ++..+.|+++.++|.-|.-.+|.--.. + ..+|.+-..- ...+
T Consensus 96 ~~nA~r~~ke~gA~aVKlEGG------~~~~~~i~~L~~~gIPV~gHiGLtPQ~--v-----~~~GGykvqG----r~~~ 158 (268)
T COG0413 96 LKNAARLMKEAGADAVKLEGG------EEMAETIKRLTERGIPVMGHIGLTPQS--V-----NWLGGYKVQG----RTEE 158 (268)
T ss_pred HHHHHHHHHHhCCCEEEEcCC------HHHHHHHHHHHHcCCceEEEecCChhh--h-----hccCCeeeec----CCHH
Confidence 444455667889999999999 778899999999999999999984321 1 1122221111 1124
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+.+++++.++.-=+|||..+.+|.
T Consensus 159 ~a~~l~~dA~ale~AGaf~ivlE~ 182 (268)
T COG0413 159 SAEKLLEDAKALEEAGAFALVLEC 182 (268)
T ss_pred HHHHHHHHHHHHHhcCceEEEEec
Confidence 678999999999999999999998
|
|
| >CHL00073 chlN photochlorophyllide reductase subunit N | Back alignment and domain information |
|---|
Probab=81.64 E-value=23 Score=35.06 Aligned_cols=149 Identities=13% Similarity=0.123 Sum_probs=96.8
Q ss_pred HHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 26 VVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 26 Ki~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~l-GF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
-..|.+++|++.+.--|. -|....+++++.+.++ |.. .-.+ .++|.++.....+.-... .|||
T Consensus 253 a~~Le~~~gvp~~~~P~P-----iGi~~Td~fLr~Ia~~~G~~-------pe~l-~~Er~rl~dal~d~~~~L---~GKr 316 (457)
T CHL00073 253 ATTLMRRRKCKLIGAPFP-----IGPDGTRAWIEKICSVFGIE-------PQGL-EEREEQIWESLKDYLDLV---RGKS 316 (457)
T ss_pred HHHHHHHhCCceeecCCc-----CcHHHHHHHHHHHHHHhCcC-------HHHH-HHHHHHHHHHHHHHHHHH---CCCE
Confidence 444557777755442222 4555788888887775 521 2335 677778887777631111 2443
Q ss_pred cCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCcc---HHHHHHHHhccCC
Q 026320 105 FNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAKVIGRLGL 181 (240)
Q Consensus 105 ~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r---~d~v~~i~~~~~~ 181 (240)
-. =+ -++...+..++-..+.|..-|.+ |....+..+. .+.+.++++..+.
T Consensus 317 va--i~----------------------Gdp~~~i~LarfL~elGmevV~v---gt~~~~~~~~~~d~~~l~~~~~~~~~ 369 (457)
T CHL00073 317 VF--FM----------------------GDNLLEISLARFLIRCGMIVYEI---GIPYMDKRYQAAELALLEDTCRKMNV 369 (457)
T ss_pred EE--EE----------------------CCCcHHHHHHHHHHHCCCEEEEE---EeCCCChhhhHHHHHHHHHHhhhcCC
Confidence 21 01 14567788888899999999988 4443344443 3344455555664
Q ss_pred -CceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhh
Q 026320 182 -EKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLEC 219 (240)
Q Consensus 182 -~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~ 219 (240)
..+|.|-++...|..++++..||+=++ + ..-++||+
T Consensus 370 ~~~vive~~D~~el~~~i~~~~pDLlIgG~--~~~~Pl~~ 407 (457)
T CHL00073 370 PMPRIVEKPDNYNQIQRIRELQPDLAITGM--AHANPLEA 407 (457)
T ss_pred CCcEEEeCCCHHHHHHHHhhCCCCEEEccc--cccCchhh
Confidence 578899999999999999999999997 8 56667764
|
|
| >PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=81.62 E-value=3.4 Score=38.53 Aligned_cols=52 Identities=17% Similarity=0.374 Sum_probs=38.5
Q ss_pred chHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHcCCcccceeee
Q 026320 52 SAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI---------SdGti~l~-~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+...+-++.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+--+|-
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGp 85 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGP 85 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccc
Confidence 46788899999999999987 56888777 456789999999999999877765
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B .... |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=81.59 E-value=13 Score=32.64 Aligned_cols=96 Identities=20% Similarity=0.295 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHcCCC---EEEec-CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFD---TIELN-VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~---~IEIS-dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
...++.+.+.+.|++ .+.+| +|+-. ..-..+|+++++. ++++--. .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~-------~~~pv~~-----~G-------------- 78 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEE-------VFIPLTV-----GG-------------- 78 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHh-------CCCCEEE-----eC--------------
Confidence 566778888899999 55666 33322 2234788888773 2211000 00
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
+..+ .+.+++.+++||+.|++ +++++. +++.+.++++.++-+++++--.
T Consensus 79 --GI~s----~~d~~~~l~~G~~~v~i-g~~~~~-----~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 79 --GIRS----LEDARRLLRAGADKVSI-NSAAVE-----NPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred --CCCC----HHHHHHHHHcCCceEEE-Cchhhh-----ChHHHHHHHHHcCCCCEEEEEE
Confidence 1112 46667777899999988 666664 3678888888887778885543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.50 E-value=34 Score=31.20 Aligned_cols=137 Identities=23% Similarity=0.349 Sum_probs=82.1
Q ss_pred ccEEEecCc-cccccC-hhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHH--HHHHHHHHcCCCEEEecCC----
Q 026320 5 VDGLKFSGG-SHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFK--EYVEDCKQVGFDTIELNVG---- 74 (240)
Q Consensus 5 ID~lKfg~G-Ts~l~p-~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~--~yl~~~k~lGF~~IEISdG---- 74 (240)
+||+|+|+- +...-. -+.++.-+..++++ +..+..-.|.... .-| .++ +..+.+++.||+.+=|...
T Consensus 81 vdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a~~aG~~gvMlDTa~Kdg 157 (235)
T PF04476_consen 81 VDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIAAEAGFDGVMLDTADKDG 157 (235)
T ss_pred CCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHHHHcCCCEEEEecccCCC
Confidence 799999953 111100 11233333444433 3455554555533 223 343 4568899999999988643
Q ss_pred -cc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 75 -SL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 75 -ti--~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
++ -++.++..++++.++++|+. .|. ... +. .+.+.+-..-|.|
T Consensus 158 ~~L~d~~~~~~L~~Fv~~ar~~gL~----~aL---AGS------------L~---------------~~di~~L~~l~pD 203 (235)
T PF04476_consen 158 GSLFDHLSEEELAEFVAQARAHGLM----CAL---AGS------------LR---------------FEDIPRLKRLGPD 203 (235)
T ss_pred CchhhcCCHHHHHHHHHHHHHccch----hhc---ccc------------CC---------------hhHHHHHHhcCCC
Confidence 22 68999999999999998765 344 110 11 2333344568888
Q ss_pred EEEEeccccccC----CCCccHHHHHHHHhcc
Q 026320 152 MIMIDSDDVCKH----ADSLRADIIAKVIGRL 179 (240)
Q Consensus 152 ~ViiEargi~d~----~g~~r~d~v~~i~~~~ 179 (240)
++=+=+- +|.. .|.++.+.|.++-+.+
T Consensus 204 ~lGfRGA-vC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 204 ILGFRGA-VCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred EEEechh-hCCCCCcCccccCHHHHHHHHHhc
Confidence 8755332 3444 4789999999886643
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.50 E-value=8.4 Score=34.29 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHcCCcEEEEeccccc
Q 026320 139 IRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 139 i~~~~~dLeAGA~~ViiEargi~ 161 (240)
.++++..+++|||-|++=+ .++
T Consensus 197 ~e~i~~~~~~gaD~vvvGS-ai~ 218 (244)
T PRK13125 197 PEDARDALSAGADGVVVGT-AFI 218 (244)
T ss_pred HHHHHHHHHcCCCEEEECH-HHH
Confidence 3567777899999988854 444
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=81.38 E-value=8.8 Score=33.65 Aligned_cols=77 Identities=25% Similarity=0.173 Sum_probs=49.6
Q ss_pred ecCccccccChhHHHHHHHHHHhCCceec--------------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC-
Q 026320 10 FSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG- 74 (240)
Q Consensus 10 fg~GTs~l~p~~~l~eKi~l~~~~gV~v~--------------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG- 74 (240)
+..|+..+.+++.+++..+.+++..|.++ +=+|.+. ......++.+.+.+.|++.|.+++=
T Consensus 97 v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~ 172 (243)
T cd04731 97 VSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKP----TGLDAVEWAKEVEELGAGEILLTSMD 172 (243)
T ss_pred EEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCcee----cCCCHHHHHHHHHHCCCCEEEEeccC
Confidence 45678888888888888777765445433 1124332 1235678889999999999999652
Q ss_pred ---cccCChhHHHHHHHHHHHc
Q 026320 75 ---SLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 75 ---ti~l~~~~r~~lI~~~~~~ 93 (240)
+..-+ ..++++++++.
T Consensus 173 ~~g~~~g~---~~~~i~~i~~~ 191 (243)
T cd04731 173 RDGTKKGY---DLELIRAVSSA 191 (243)
T ss_pred CCCCCCCC---CHHHHHHHHhh
Confidence 22222 24667777663
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=81.18 E-value=4.7 Score=35.68 Aligned_cols=68 Identities=24% Similarity=0.197 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI--SdGti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
+....|...|+.+|++.|=+ .+|+...-. .++|+++++. ...+.-=+|+
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~---~e~i~~Vk~~~~~Pv~vGGGI------------------------- 185 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGSGASYPVN---PETISLVKKASGIPLIVGGGI------------------------- 185 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC---HHHHHHHHHhhCCCEEEeCCC-------------------------
Confidence 45788999999999996654 455632233 4566666653 2222222222
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
+| .++++.-+++|||.|++
T Consensus 186 ----rs----~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 186 ----RS----PEIAYEIVLAGADAIVT 204 (205)
T ss_pred ----CC----HHHHHHHHHcCCCEEEe
Confidence 12 46777778999999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=81.15 E-value=21 Score=33.21 Aligned_cols=94 Identities=14% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHcCCCEEEecCCccc------------C-ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 59 EDCKQVGFDTIELNVGSLE------------I-PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti~------------l-~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.+.||+.|||+=|.=. + .++.-.++++.+++. .. +| +++|-.. |
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-~d-~p-v~vKiR~---G-------------- 143 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-VD-VP-VTLKIRT---G-------------- 143 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-cC-Cc-eEEEEEc---c--------------
Confidence 3445689999999998631 1 134445666666553 11 12 5555421 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc---ccccCCCCccHHHHHHHHhcc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~~r~d~v~~i~~~~ 179 (240)
|. .+..+.++.++..-++|++.|.+-+| +.|.. ....+.+.++.+.+
T Consensus 144 -~~----~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G--~a~~~~i~~ik~~~ 193 (321)
T PRK10415 144 -WA----PEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG--EAEYDSIRAVKQKV 193 (321)
T ss_pred -cc----CCcchHHHHHHHHHHhCCCEEEEecCccccccCC--CcChHHHHHHHHhc
Confidence 11 01234567777778999999999998 34433 33345566555433
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=80.86 E-value=7.9 Score=38.80 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=68.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcc--------cCChhHHH----HHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL--------EIPEETLL----RYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti--------~l~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.-++.+.+.|.+.|-|...+- .++.++=+ +.|+.+++.|+.|. |.-.+-. | .
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~--~~~e~f~-------D----~-- 148 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVI--YDAEHFF-------D----G-- 148 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE--EEeeeee-------e----c--
Confidence 5678888999999999866553 33444433 34788899888763 4432100 1 0
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
...+++.+++.++...++||+.|. |+|..|-..+..+.++++.+
T Consensus 149 --------~r~~~~~l~~~~~~a~~aGad~i~-----i~DTvG~~~P~~v~~li~~l 192 (526)
T TIGR00977 149 --------YKANPEYALATLATAQQAGADWLV-----LCDTNGGTLPHEISEITTKV 192 (526)
T ss_pred --------ccCCHHHHHHHHHHHHhCCCCeEE-----EecCCCCcCHHHHHHHHHHH
Confidence 012689999999999999999986 57889999988888887654
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=80.55 E-value=15 Score=34.20 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=55.2
Q ss_pred EecCccccccChhHHHHHHHHHHhC---Cceec--C-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQH---DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---- 78 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~---gV~v~--~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l---- 78 (240)
|-|.|++.+-.++.+.+.++-.++. +++|. . .+|- ..+...++.+.+.+.|.+.|-|+.+|-.=
T Consensus 105 ~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g 178 (312)
T PRK10550 105 GSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------SGERKFEIADAVQQAGATELVVHGRTKEDGYRA 178 (312)
T ss_pred cCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------CchHHHHHHHHHHhcCCCEEEECCCCCccCCCC
Confidence 7788999999999999999988874 35444 2 2341 11245678888999999999999887532
Q ss_pred ChhHHHHHHHHHHHc
Q 026320 79 PEETLLRYVRLVKSA 93 (240)
Q Consensus 79 ~~~~r~~lI~~~~~~ 93 (240)
+.-++ +.|++++++
T Consensus 179 ~~~~~-~~i~~ik~~ 192 (312)
T PRK10550 179 EHINW-QAIGEIRQR 192 (312)
T ss_pred CcccH-HHHHHHHhh
Confidence 11133 778888874
|
|
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=80.49 E-value=13 Score=31.20 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=46.5
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhC--CceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~--gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
++||.+|+|+ ...++.. -+-|+..+++ ++++... +.. + --..+++.+.+.|.+.|=+..-+ +
T Consensus 24 ~~i~~ieig~--~~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGad~i~~h~~~---~ 88 (202)
T cd04726 24 DGVDIIEAGT--PLIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGADIVTVLGAA---P 88 (202)
T ss_pred hcCCEEEcCC--HHHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCCCEEEEEeeC---C
Confidence 4588888853 2222211 2334444443 5555432 222 2 11234688999999999887654 2
Q ss_pred hhHHHHHHHHHHHcCCcc
Q 026320 80 EETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v 97 (240)
.+.-.++++.++++|.++
T Consensus 89 ~~~~~~~i~~~~~~g~~~ 106 (202)
T cd04726 89 LSTIKKAVKAAKKYGKEV 106 (202)
T ss_pred HHHHHHHHHHHHHcCCeE
Confidence 344567999999987654
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=80.41 E-value=5.8 Score=35.51 Aligned_cols=75 Identities=23% Similarity=0.192 Sum_probs=51.7
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 50 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 50 g~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+|+.+..|-..++.+||..|=+. ++-...+. ++|+++++. +..+.-.+|++
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~SG~~~~~---e~I~~v~~~~~~~pl~vGGGIr----------------------- 185 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YSGAYGPP---EVVRAVKKVLGDTPLIVGGGIR----------------------- 185 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CCCCcCCH---HHHHHHHHhcCCCCEEEeCCCC-----------------------
Confidence 34568899999999999988877 54444433 456666553 45555555652
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
+ .+++++.+++|||.|++ +.-+++
T Consensus 186 ------s----~e~a~~l~~aGAD~VVV-Gsai~~ 209 (219)
T cd02812 186 ------S----GEQAKEMAEAGADTIVV-GNIVEE 209 (219)
T ss_pred ------C----HHHHHHHHHcCCCEEEE-CchhhC
Confidence 1 57888889999999999 433444
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.29 E-value=28 Score=31.75 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=85.5
Q ss_pred ccEEEecCccccccC--hhHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC------
Q 026320 5 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG------ 74 (240)
Q Consensus 5 ID~lKfg~GTs~l~p--~~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG------ 74 (240)
+||+|.|.--..=.+ .+.++..+...+.+. ..+.+-.|.++--...+ .-.+-.+.+++.||+.+=|...
T Consensus 81 vDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~g~MlDTa~Kdg~~ 159 (238)
T PRK02227 81 ADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFDGAMLDTAIKDGKS 159 (238)
T ss_pred CCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCCEEEEecccCCCcc
Confidence 699999963111111 123334444445443 34545556654322221 2346778889999999988643
Q ss_pred -cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEE
Q 026320 75 -SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMI 153 (240)
Q Consensus 75 -ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~V 153 (240)
|--|+.++..++++.++++|+. .|. ...+ . .+.+..-..-+.|++
T Consensus 160 Lfd~l~~~~L~~Fv~~ar~~Gl~----~gL---AGSL------------~---------------~~dip~L~~l~pD~l 205 (238)
T PRK02227 160 LFDHMDEEELAEFVAEARSHGLM----SAL---AGSL------------K---------------FEDIPALKRLGPDIL 205 (238)
T ss_pred hHhhCCHHHHHHHHHHHHHcccH----hHh---cccC------------c---------------hhhHHHHHhcCCCEE
Confidence 2269999999999999998665 333 1111 1 233333357788877
Q ss_pred EEeccccc---cCCCCccHHHHHHHHhccC
Q 026320 154 MIDSDDVC---KHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 154 iiEargi~---d~~g~~r~d~v~~i~~~~~ 180 (240)
=+=+- +| |+++.++.+.|.++.+.+.
T Consensus 206 GfRga-vC~g~dR~~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 206 GVRGA-VCGGGDRTGRIDPELVAELREALR 234 (238)
T ss_pred Eechh-ccCCCCcccccCHHHHHHHHHHhh
Confidence 55332 34 5679999999999987665
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=14 Score=32.94 Aligned_cols=93 Identities=12% Similarity=0.203 Sum_probs=58.4
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHH
Q 026320 57 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 136 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 136 (240)
+.+...+.|++.+=|=|=.-......-.++|+++.+.-+. | +-+ +. |..+
T Consensus 35 ~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~--~-v~v--GG-----------------------GIrs-- 84 (232)
T PRK13586 35 IASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFD--W-IQV--GG-----------------------GIRD-- 84 (232)
T ss_pred HHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCC--C-EEE--eC-----------------------CcCC--
Confidence 3444456889888776543333555556888888773221 1 222 10 0112
Q ss_pred HHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEe
Q 026320 137 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFE 187 (240)
Q Consensus 137 ~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifE 187 (240)
++.+++.|++||++|++=+.-+. .+++++++++.+|.+++++=
T Consensus 85 --~e~~~~~l~~Ga~kvvigt~a~~------~p~~~~~~~~~~g~~~ivvs 127 (232)
T PRK13586 85 --IEKAKRLLSLDVNALVFSTIVFT------NFNLFHDIVREIGSNRVLVS 127 (232)
T ss_pred --HHHHHHHHHCCCCEEEECchhhC------CHHHHHHHHHHhCCCCEEEE
Confidence 67888889999999998444222 45788888888887887743
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=35 Score=33.60 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=46.5
Q ss_pred cChhHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc
Q 026320 18 MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 93 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~ 93 (240)
+..+.|++-++++|++|+++|.- ++..-- ... .+.+|++.+.++|+|+|=|+| ..+++.+++.
T Consensus 43 f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l~~~gvDgvIV~d----------~G~l~~~ke~ 107 (443)
T PRK15452 43 FNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPVIAMKPDALIMSD----------PGLIMMVREH 107 (443)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHh
Confidence 44567999999999999988753 432211 122 688889999999999999998 3466666665
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=80.18 E-value=25 Score=32.64 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEe
Q 026320 134 DVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
++++.++.++..-++|.++|-+=
T Consensus 239 ~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 239 DLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC
Confidence 47788888888778999988663
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=80.16 E-value=4.6 Score=38.55 Aligned_cols=83 Identities=24% Similarity=0.242 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHcCCCEEEec---CCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELN---VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEIS---dGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
..+.+-++++-+-|+|.|=.. ...-.+|.++|.++++.+.+. +..|-|.+-.. -..+
T Consensus 146 ~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~---a~~~TG~~~~y-----------~~ni------ 205 (367)
T cd08205 146 EELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRR---ANEETGRKTLY-----------APNI------ 205 (367)
T ss_pred HHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHH---HHHhhCCcceE-----------EEEc------
Confidence 355666667777899988543 333478999999999998872 22122222110 0001
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..+.++++++++...++||+.||+--
T Consensus 206 ---t~~~~e~i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 206 ---TGDPDELRRRADRAVEAGANALLINP 231 (367)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 12469999999999999999999976
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=80.16 E-value=12 Score=33.01 Aligned_cols=101 Identities=12% Similarity=0.161 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.--++.+..++.|++.+=|=|=.-....+.-..+|+++.+.= .+.++-+. + .
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~-----~~~v~vgG------G-----------------i 87 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAW-----PLGLWVDG------G-----------------I 87 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhC-----CCCEEEec------C-----------------c
Confidence 344555666677999887766543345566677888887730 11222111 1 1
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCch
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPR 192 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~ 192 (240)
.+ ++.+++.|++||++|++=+.-+. + +++.++++++|-+++++=-.-++
T Consensus 88 r~----~edv~~~l~~Ga~~viigt~~~~------~-~~~~~~~~~~~~~~iivslD~~~ 136 (233)
T cd04723 88 RS----LENAQEWLKRGASRVIVGTETLP------S-DDDEDRLAALGEQRLVLSLDFRG 136 (233)
T ss_pred CC----HHHHHHHHHcCCCeEEEcceecc------c-hHHHHHHHhcCCCCeEEEEeccC
Confidence 12 78889999999999999554222 2 46777777776557776555433
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=80.11 E-value=8.1 Score=34.15 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...+..+.+.+-||.+|||.- ......+.|+++++.. +++-+ |+ |..++
T Consensus 17 ~a~~ia~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~~----~~~~v-------GA------GTVl~--------- 65 (201)
T PRK06015 17 HAVPLARALAAGGLPAIEITL-----RTPAALDAIRAVAAEV----EEAIV-------GA------GTILN--------- 65 (201)
T ss_pred HHHHHHHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHHC----CCCEE-------ee------EeCcC---------
Confidence 455677888999999999864 4566778999988742 23322 21 22233
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 66 ------~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 66 ------AKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred ------HHHHHHHHHcCCCEEECCC
Confidence 6788999999999998654
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=80.02 E-value=50 Score=30.53 Aligned_cols=135 Identities=17% Similarity=0.284 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~--r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.+..|-+.||+.|=|.--.+++.+-- =+++++.++..|.-|--|+|.=-+ ..|..... ...-.
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g------~e~~~~~~--------~~~~T 148 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGG------EEDGVVGD--------EGLLT 148 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecC------ccCCcccc--------cccCC
Confidence 566777899999999976665443322 246788899999999999998422 11110000 01123
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec---cccccC-CCCccHHHHHHHHhccCCCceEEecC-Cc-hhHHHHHHHhC-CCcc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS---DDVCKH-ADSLRADIIAKVIGRLGLEKTMFEAT-NP-RTSEWFIRRYG-PKVN 206 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~-~g~~r~d~v~~i~~~~~~~~lifEAP-~k-~qQ~~~I~~fG-~~VN 206 (240)
||++..+.+++ -|+|.+-+== -|.|.. .-+++.+.+.+|-+.++.--++==+. .+ +|....|+ +| ..||
T Consensus 149 ~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiN 224 (276)
T cd00947 149 DPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIK-LGVCKIN 224 (276)
T ss_pred CHHHHHHHHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEE
Confidence 66666655553 4888776654 289988 78899999999998775332333222 23 33333443 44 4566
Q ss_pred cc
Q 026320 207 LF 208 (240)
Q Consensus 207 Lg 208 (240)
++
T Consensus 225 i~ 226 (276)
T cd00947 225 IN 226 (276)
T ss_pred eC
Confidence 65
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK12677 xylose isomerase; Provisional | Back alignment and domain information |
|---|
Probab=80.01 E-value=8.3 Score=37.00 Aligned_cols=144 Identities=15% Similarity=0.188 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
...+.++.++++||++||+.+..+ +.+..+ ..++-+.+++.|++|..-..-.++.. . -++..| .+|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p-~--~~~g~l---ts~d 105 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHP-V--FKDGAF---TSND 105 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCc-c--ccCCcC---CCCC
Confidence 578888999999999999986543 223332 45667777888998543110000000 0 000001 1110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEe-ccccc--cCCCCcc------HHHHHHHHhc---cCC-CceEEec----
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMID-SDDVC--KHADSLR------ADIIAKVIGR---LGL-EKTMFEA---- 188 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE-argi~--d~~g~~r------~d~v~~i~~~---~~~-~~lifEA---- 188 (240)
........+.+.+.+.-.-+.||..|.+= ++.-+ +...+++ .+-+.++.+. .|. =+|..|-
T Consensus 106 --~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~e 183 (384)
T PRK12677 106 --RDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNE 183 (384)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCC
Confidence 00111234556666667778899987773 33222 2222211 1223344432 220 1356664
Q ss_pred -------CCchhHHHHHHHhCCC
Q 026320 189 -------TNPRTSEWFIRRYGPK 204 (240)
Q Consensus 189 -------P~k~qQ~~~I~~fG~~ 204 (240)
|...+-..+|+..|..
T Consensus 184 p~~~~~l~t~~~al~li~~lg~~ 206 (384)
T PRK12677 184 PRGDILLPTVGHALAFIATLEHP 206 (384)
T ss_pred CCCCeeeCCHHHHHHHHHHhCCC
Confidence 3344566899999843
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 240 | ||||
| 1qwg_A | 251 | Crystal Structure Of Methanococcus Jannaschii Phosp | 1e-07 |
| >pdb|1QWG|A Chain A, Crystal Structure Of Methanococcus Jannaschii Phosphosulfolactate Synthase Length = 251 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 Length = 251 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 8e-65
Identities = 49/239 (20%), Positives = 96/239 (40%), Gaps = 35/239 (14%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVE 59
G ++D +KF G+ +++ + ++E + + V G E+ G F E++
Sbjct: 35 CGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG--KFDEFLN 92
Query: 60 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119
+C+++GF+ +E++ GS +I E ++ K G + D D
Sbjct: 93 ECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDD--- 149
Query: 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIA 173
I+ L+AGAD ++I+ + + ++ + +
Sbjct: 150 ------------------RIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELD 191
Query: 174 KVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR----GRNLGK 227
+ + + K +FEA FI ++G VNL + +V+ LE LR G GK
Sbjct: 192 VLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFGK 250
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 Length = 276 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 5e-54
Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 34/229 (14%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDW-AEHLIRNGPSAFKEYVE 59
++D +KF G+ L +EE + +HD+ G E + E+
Sbjct: 62 ASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITFFFGGTLFEKYVSQK--KVNEFHR 117
Query: 60 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119
C G + IE++ G+L + + Y+ L G
Sbjct: 118 YCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFLVLS------------------EVG 159
Query: 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIAK 174
+ A + + +EAGA+ ++ ++ + +C + +R I+
Sbjct: 160 SKDAELASRQ----SSEEWLEYIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVDD 215
Query: 175 VIGR-LGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 221
+I + + + +FEA N + FI++ GP VNL + + LE LR
Sbjct: 216 IISSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 264
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A Length = 290 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 132 VEDVDLLIRRAERCLEAGADMIMIDS 157
+RR + EAGAD I+I S
Sbjct: 162 GLGQQEAVRRGQAYEEAGADAILIHS 187
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A Length = 295 | Back alignment and structure |
|---|
Score = 39.1 bits (92), Expect = 6e-04
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 132 VEDVDLLIRRAERCLEAGADMIMIDS 157
+D ++RAE AGAD I++ S
Sbjct: 166 GWGLDEALKRAEAYRNAGADAILMHS 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 100.0 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 100.0 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 96.4 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 96.05 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 95.98 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 95.95 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 95.87 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 95.69 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 95.64 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 95.57 | |
| 1yx1_A | 264 | Hypothetical protein PA2260; structural genomics, | 95.47 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 95.4 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 95.3 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 95.14 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 95.06 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 94.98 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 94.78 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 94.6 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 94.4 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 94.38 | |
| 2g0w_A | 296 | LMO2234 protein; putative sugar isomerase, structu | 94.19 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 94.04 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 93.97 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 93.92 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 93.86 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 93.85 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 93.82 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 93.8 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 93.66 | |
| 2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, | 93.62 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.59 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.49 | |
| 3obe_A | 305 | Sugar phosphate isomerase/epimerase; structural ge | 93.41 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 93.21 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 93.03 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 93.02 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 92.91 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 92.85 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 92.84 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 92.76 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 92.75 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 92.64 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 92.61 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 92.46 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 92.45 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 92.44 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 92.43 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 92.28 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 92.27 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 92.26 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 92.16 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 91.89 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 91.86 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 91.84 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 91.76 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 91.7 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 91.63 | |
| 3ngf_A | 269 | AP endonuclease, family 2; structural genomics, se | 91.36 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 91.24 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 90.92 | |
| 2hk0_A | 309 | D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00 | 90.88 | |
| 2qw5_A | 335 | Xylose isomerase-like TIM barrel; putative sugar p | 90.87 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 90.83 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.74 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 90.72 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 90.71 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 90.67 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 90.6 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 90.57 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 90.35 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 90.35 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 90.34 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 90.26 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 90.21 | |
| 3ktc_A | 333 | Xylose isomerase; putative sugar isomerase, struct | 90.19 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 90.17 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.11 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 89.98 | |
| 3l23_A | 303 | Sugar phosphate isomerase/epimerase; structural ge | 89.91 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 89.8 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 89.71 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 89.68 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 89.56 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 89.45 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 89.41 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 89.39 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 89.37 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 89.23 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 89.22 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 89.2 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 89.18 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 88.93 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 88.83 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 88.78 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 88.73 | |
| 1hjs_A | 332 | Beta-1,4-galactanase; 4-galactanases, family 53 gl | 88.69 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 88.68 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 88.41 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 88.39 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 88.35 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 88.3 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 87.93 | |
| 2zds_A | 340 | Putative DNA-binding protein; TIM-barrel fold, str | 87.87 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 87.76 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 87.66 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 87.57 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 87.44 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 87.43 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 87.43 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 87.42 | |
| 1k77_A | 260 | EC1530, hypothetical protein YGBM; TIM barrel, str | 87.41 | |
| 1fob_A | 334 | Beta-1,4-galactanase; B/A barrel, glycosyl hydrola | 87.38 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 87.36 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 87.28 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 87.25 | |
| 3cny_A | 301 | Inositol catabolism protein IOLE; xylose isomerase | 87.24 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 87.23 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 87.19 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 87.14 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 87.0 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 86.92 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 86.83 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 86.79 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 86.78 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 86.78 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 86.63 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 86.6 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 86.49 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 86.32 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 86.28 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 86.26 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 86.17 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 86.15 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 86.12 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 86.05 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 86.03 | |
| 4gqr_A | 496 | Pancreatic alpha-amylase; glycosyl hydrolase, diab | 85.59 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 85.36 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 85.26 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 84.92 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 84.58 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 84.28 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 84.14 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 84.12 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 84.02 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 83.99 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 83.94 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 83.91 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 83.79 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 83.69 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 82.96 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 82.91 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 82.71 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 82.45 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 82.34 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 82.3 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 81.99 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 81.97 | |
| 1xla_A | 394 | D-xylose isomerase; isomerase(intramolecular oxido | 81.94 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 81.86 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 81.8 | |
| 2j6v_A | 301 | UV endonuclease, UVDE; plasmid, TIM barrel, DNA re | 81.77 | |
| 2z1k_A | 475 | (NEO)pullulanase; hydrolase, structural genomics, | 81.59 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 81.42 | |
| 3m6y_A | 275 | 4-hydroxy-2-oxoglutarate aldolase; structural geno | 81.39 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 81.35 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 81.29 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 81.21 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 81.16 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 80.99 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 80.92 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 80.79 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 80.64 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 80.49 | |
| 3qxb_A | 316 | Putative xylose isomerase; structural genomics, jo | 80.39 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 80.38 | |
| 2vtf_A | 626 | Endo-beta-N-acetylglucosaminidase; hydrolase, fami | 80.24 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 80.07 |
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-82 Score=567.89 Aligned_cols=207 Identities=23% Similarity=0.421 Sum_probs=196.6
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
||+|||++|||||||+|||++.|++||++||+|||+|||| ||||+|++|| ++++|+++||++||++|||||||++||
T Consensus 35 ~g~yID~lKfg~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg--~~~~yl~~~k~lGf~~iEiS~G~i~l~ 112 (251)
T 1qwg_A 35 CGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG--KFDEFLNECEKLGFEAVEISDGSSDIS 112 (251)
T ss_dssp HGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTT--CHHHHHHHHHHHTCCEEEECCSSSCCC
T ss_pred hhhhcceEEecCceeeecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcC--cHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 5899999999999999999999999999999999999997 5999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|++++++||+|+||+|+|++. .+ ...+|++||+++++||+|||++||||||
T Consensus 113 ~~~~~~~I~~~~~~G~~v~~EvG~k~~~------~~---------------~~~~~~~~I~~~~~~LeAGA~~ViiEarE 171 (251)
T 1qwg_A 113 LEERNNAIKRAKDNGFMVLTEVGKKMPD------KD---------------KQLTIDDRIKLINFDLDAGADYVIIEGRE 171 (251)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSHH------HH---------------TTCCHHHHHHHHHHHHHHTCSEEEECCTT
T ss_pred HHHHHHHHHHHHHCCCEEeeeccccCCc------cc---------------CCCCHHHHHHHHHHHHHCCCcEEEEeeec
Confidence 9999999999999999999999999752 11 1236999999999999999999999998
Q ss_pred -----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCcc
Q 026320 159 -----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSHR 230 (240)
Q Consensus 159 -----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~~ 230 (240)
|||+++|+||+|++++|++++|++|||||||+|+||+|||++|||||||| |+|+||++|||||+|+||.+..
T Consensus 172 sG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~qq~~fI~~fG~~VNLgNI~~~eVi~LE~LR~GLrgDT~~ 249 (251)
T 1qwg_A 172 SGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFG 249 (251)
T ss_dssp TCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHHTCSGGGTT
T ss_pred ccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECCChHHHHHHHHHhCCCccccCCCHHHHHHHHHHHccccccccc
Confidence 99999999999999999999999999999999999999999999999998 9999999999999999886653
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-80 Score=555.41 Aligned_cols=203 Identities=20% Similarity=0.364 Sum_probs=178.1
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
||+|||++||||||++|||+ |++||++||+|||+|||| ||||+|++|| ++++|+++||++||++|||||||++||
T Consensus 62 ag~yID~lKfg~GTs~l~~~--l~ekI~l~~~~gV~v~~GGTlfE~~l~qg--~~~~yl~~~k~lGF~~IEISdGti~l~ 137 (276)
T 1u83_A 62 ASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITFFFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMT 137 (276)
T ss_dssp HGGGCCEEEECTTGGGGCTT--HHHHHHHHHHTTCEEEECHHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCC
T ss_pred hhhhcceEEecCcchhhhHH--HHHHHHHHHHcCCeEeCCcHHHHHHHHcC--cHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 58999999999999999997 999999999999999997 6999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|+++++. |+|+||+|+|++.. +. ..+|++||+++++||+|||++||||||
T Consensus 138 ~~~~~~lI~~a~~~-f~Vl~EvG~K~~~~------~~---------------~~~~~~~I~~~~~dLeAGA~~ViiEaRE 195 (276)
T 1u83_A 138 NKEKAAYIADFSDE-FLVLSEVGSKDAEL------AS---------------RQSSEEWLEYIVEDMEAGAEKVITEARE 195 (276)
T ss_dssp HHHHHHHHHHHTTT-SEEEEECSCCC---------------------------CCSTHHHHHHHHHHHHTEEEEEEC---
T ss_pred HHHHHHHHHHHHhh-cEEeeeccccCccc------cC---------------CCCHHHHHHHHHHHHHCCCcEEEEeeec
Confidence 99999999999999 99999999998621 11 225789999999999999999999996
Q ss_pred ----ccccCCCCccHHHH-HHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCc
Q 026320 159 ----DVCKHADSLRADII-AKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSH 229 (240)
Q Consensus 159 ----gi~d~~g~~r~d~v-~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~ 229 (240)
|||+++|+||+|++ ++|++++|++|||||||+|+||+|||++|||||||| |+|+||++|||||.|+||.+.
T Consensus 196 SG~~Gi~~~~g~~r~d~v~~~i~~~l~~eklifEAp~k~qq~~fI~~fGp~VNLgNI~~~eVi~LE~LR~GLrgDT~ 272 (276)
T 1u83_A 196 SGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDTF 272 (276)
T ss_dssp ---------------CCHHHHHTTTSCGGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHTTCSGGGC
T ss_pred cCCCCccCCCCCCcHHHHHHHHHhhCChhhEEEECCCHHHHHHHHHHhCCCccccCCCHHHHHHHHHHHcccccccc
Confidence 89999999999999 999999999999999999999999999999999998 999999999999999988654
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.038 Score=46.58 Aligned_cols=127 Identities=6% Similarity=0.116 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti--~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
.+++.++.++++||+.||+....+ .++.++..++.+.+++.|+++.. ++.-..
T Consensus 31 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~------------------------ 85 (257)
T 3lmz_A 31 DLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYA-VGPIYM------------------------ 85 (257)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEE-EEEEEE------------------------
T ss_pred CHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEE-Eecccc------------------------
Confidence 689999999999999999998743 55677888999999999998653 333110
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC--------CchhHHHHHHHhC
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT--------NPRTSEWFIRRYG 202 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP--------~k~qQ~~~I~~fG 202 (240)
.+.+.+.+.++..-+.||.+|.+... .. .-..+.++++..|+ ++.+|.- ...+-..+++..+
T Consensus 86 --~~~~~~~~~i~~A~~lGa~~v~~~p~-----~~--~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~~~~~~~ll~~~~ 155 (257)
T 3lmz_A 86 --KSEEEIDRAFDYAKRVGVKLIVGVPN-----YE--LLPYVDKKVKEYDF-HYAIHLHGPDIKTYPDATDVWVHTKDLD 155 (257)
T ss_dssp --CSHHHHHHHHHHHHHHTCSEEEEEEC-----GG--GHHHHHHHHHHHTC-EEEEECCCTTCSSSCSHHHHHHHHTTSC
T ss_pred --CCHHHHHHHHHHHHHhCCCEEEecCC-----HH--HHHHHHHHHHHcCC-EEEEecCCCcccccCCHHHHHHHHHhCC
Confidence 13566677777777899999998642 11 22345556666665 3556644 2334455666555
Q ss_pred CCcccccCCCCc
Q 026320 203 PKVNLFVDHSQV 214 (240)
Q Consensus 203 ~~VNLgI~~~dV 214 (240)
|+|-+-.|..+.
T Consensus 156 p~vg~~~D~~h~ 167 (257)
T 3lmz_A 156 PRIGMCLDVGHD 167 (257)
T ss_dssp TTEEEEEEHHHH
T ss_pred CCccEEEchhhH
Confidence 654443554433
|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.031 Score=46.89 Aligned_cols=139 Identities=22% Similarity=0.222 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||+.||+... .++..+..++.+.+++.|+++..-..-.+ .. ..|+. ...
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~-~~d~~------------~r~ 79 (275)
T 3qc0_A 19 GFAEAVDICLKHGITAIAPWRD--QVAAIGLGEAGRIVRANGLKLTGLCRGGF----FP-APDAS------------GRE 79 (275)
T ss_dssp CHHHHHHHHHHTTCCEEECBHH--HHHHHCHHHHHHHHHHHTCEESCEEEEEC----CC-CSSHH------------HHH
T ss_pred CHHHHHHHHHHcCCCEEEeccc--cccccCHHHHHHHHHHcCCceEEeecCCC----cC-CCCHH------------HHH
Confidence 6889999999999999999764 23456677888889999998765322111 11 11110 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCcc-------HHHHHHH---HhccCCCceEEecC------------C
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR-------ADIIAKV---IGRLGLEKTMFEAT------------N 190 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r-------~d~v~~i---~~~~~~~~lifEAP------------~ 190 (240)
...+.+.+.++..-+.||..|++-.-..... +.-. .+.+.++ ++..|+ +|.+|.- .
T Consensus 80 ~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~~~~~~~~~ 157 (275)
T 3qc0_A 80 KAIDDNRRAVDEAAELGADCLVLVAGGLPGG-SKNIDAARRMVVEGIAAVLPHARAAGV-PLAIEPLHPMYAADRACVNT 157 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEECBCCCTT-CCCHHHHHHHHHHHHHHHHHHHHHHTC-CEEECCCCGGGTTTTBSCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCCCCCC-CcCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeECCCcccCCccccCC
Confidence 1234555555555678999999876322111 1111 1223333 334455 5888851 3
Q ss_pred chhHHHHHHHhCCCcccc--cCCCCc
Q 026320 191 PRTSEWFIRRYGPKVNLF--VDHSQV 214 (240)
Q Consensus 191 k~qQ~~~I~~fG~~VNLg--I~~~dV 214 (240)
..+-..++++.++ |+| .|..+.
T Consensus 158 ~~~~~~l~~~~~~--~vg~~~D~~h~ 181 (275)
T 3qc0_A 158 LGQALDICETLGP--GVGVAIDVYHV 181 (275)
T ss_dssp HHHHHHHHHHHCT--TEEEEEEHHHH
T ss_pred HHHHHHHHHHhCc--ccEEEEEhhhh
Confidence 4567789999998 665 554443
|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.073 Score=45.55 Aligned_cols=145 Identities=14% Similarity=0.259 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------cCChhHHHHHHHHHHHcCCcccceeeee-cCCCCCCCcccccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-------EIPEETLLRYVRLVKSAGLKAKPKFAVM-FNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-------~l~~~~r~~lI~~~~~~G~~v~~E~g~k-~~~~evg~~~d~~~~~~~~~ 124 (240)
.+++.++.++++||+.||++.... .++.++..++.+.+++.|+++.+ ++.- +..-..+ ..|+.
T Consensus 31 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~-~~d~~------- 101 (295)
T 3cqj_A 31 CWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPS-MCLSAHRRFPLG-SEDDA------- 101 (295)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEE-EEEGGGGTSCTT-CSSHH-------
T ss_pred CHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEE-EecCcccCCCCC-CCCHH-------
Confidence 799999999999999999986542 45677788899999999999754 2210 0000011 01110
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHH-------HHH---HHhccCCCceEEecC-----
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI-------IAK---VIGRLGLEKTMFEAT----- 189 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~-------v~~---i~~~~~~~~lifEAP----- 189 (240)
......+.+.+.++..-+.||..|++-+-..+. +.-+.+. +.+ +++..|+ +|.+|.-
T Consensus 102 -----~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~~~~~~ 173 (295)
T 3cqj_A 102 -----VRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYY--QEANNETRRRFRDGLKESVEMASRAQV-TLAMEIMDYPLM 173 (295)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSS--SCCCHHHHHHHHHHHHHHHHHHHHHTC-EEEEECCSSGGG
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCc--CcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEeeCCCccc
Confidence 001124556666666678899999986432211 1112222 222 2233444 5778863
Q ss_pred -CchhHHHHHHHhCC-CcccccCCCCc
Q 026320 190 -NPRTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 190 -~k~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
...+-..++++.|+ +|-+.+|....
T Consensus 174 ~~~~~~~~l~~~v~~~~vg~~~D~~h~ 200 (295)
T 3cqj_A 174 NSISKALGYAHYLNNPWFQLYPDIGNL 200 (295)
T ss_dssp CSHHHHHHHHHHHCCTTEEEECBHHHH
T ss_pred CCHHHHHHHHHhcCCCCeEEEeccchH
Confidence 44667789999985 44443555433
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.058 Score=47.62 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCceecC--Cc-H-HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 026320 22 FIEEVVKRAHQHDVYVST--GD-W-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~--Gt-l-~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v 97 (240)
.+++-++.+|++|+.|.. ++ + .|.....+++.+.++++.+.+.|.+.|=|.|-.--+.+.+-.++++.+++. +.
T Consensus 121 ~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~-~~- 198 (295)
T 1ydn_A 121 RLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAI-AP- 198 (295)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTT-SC-
T ss_pred HHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-CC-
Confidence 345669999999998751 21 1 133333445567777777779999999999866678888889999999885 21
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccHHH
Q 026320 98 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRADI 171 (240)
Q Consensus 98 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d~ 171 (240)
...+++.. .... ..-...+...++|||++|=+=-.|+-. ..||...+.
T Consensus 199 ~~~l~~H~-Hn~~-------------------------Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~ 252 (295)
T 1ydn_A 199 AHSLAGHY-HDTG-------------------------GRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVA 252 (295)
T ss_dssp GGGEEEEE-BCTT-------------------------SCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHH
T ss_pred CCeEEEEE-CCCc-------------------------chHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHH
Confidence 01244432 1111 112556778899999977653347766 689999887
Q ss_pred HHHHHhccCC
Q 026320 172 IAKVIGRLGL 181 (240)
Q Consensus 172 v~~i~~~~~~ 181 (240)
+-..+...|.
T Consensus 253 lv~~l~~~g~ 262 (295)
T 1ydn_A 253 VVEMLHEMGF 262 (295)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 7766665553
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.13 Score=43.12 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS------------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGA 120 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt------------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~ 120 (240)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+++.. ++.-.. .
T Consensus 23 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~-------~------ 88 (262)
T 3p6l_A 23 PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVG-TGVYVA-------E------ 88 (262)
T ss_dssp CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEE-EEEECC-------S------
T ss_pred CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEE-EeccCC-------c------
Confidence 68999999999999999998653 356778888999999999998654 222110 0
Q ss_pred ccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 121 YVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+.+.+.+.++.+-+.||..|.+..
T Consensus 89 -------------~~~~~~~~i~~A~~lGa~~v~~~~ 112 (262)
T 3p6l_A 89 -------------KSSDWEKMFKFAKAMDLEFITCEP 112 (262)
T ss_dssp -------------STTHHHHHHHHHHHTTCSEEEECC
T ss_pred -------------cHHHHHHHHHHHHHcCCCEEEecC
Confidence 123445555556688999999975
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.32 Score=40.56 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc--c-CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL--E-IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti--~-l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+++.++.++++||++||+..... . .+..+..++-+.+++.|+++.+ ++.-.+.. .. ++
T Consensus 20 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~-~~~~~~~~---~~-~~------------- 81 (272)
T 2q02_A 20 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFN---QL-TE------------- 81 (272)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTT---SC-CH-------------
T ss_pred CHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEe-chhhhccC---Cc-HH-------------
Confidence 688999999999999999985432 2 2446677788888999998754 22211110 00 10
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCcc---HHHHHHH---HhccCCCceEEecC--------CchhHH
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLR---ADIIAKV---IGRLGLEKTMFEAT--------NPRTSE 195 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r---~d~v~~i---~~~~~~~~lifEAP--------~k~qQ~ 195 (240)
...+.+.+.++..-+.||..|.+-+- .... ..++ .+.+.++ ++..|+ +|.+|.- ...+-.
T Consensus 82 ---~~~~~~~~~i~~a~~lG~~~v~~~~g-~~~~-~~~~~~~~~~l~~l~~~a~~~gv-~l~~E~~~~~~~~~~~~~~~~ 155 (272)
T 2q02_A 82 ---EVVKKTEGLLRDAQGVGARALVLCPL-NDGT-IVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVSSLRSAVWAQ 155 (272)
T ss_dssp ---HHHHHHHHHHHHHHHHTCSEEEECCC-CSSB-CCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTCSCCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHhCCCEEEEccC-CCch-hHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCCCcccccCHHHHH
Confidence 01344555556666789999988432 1111 1121 2333333 344554 5777763 345566
Q ss_pred HHHHHhCCCcccccCCCCchh
Q 026320 196 WFIRRYGPKVNLFVDHSQVMD 216 (240)
Q Consensus 196 ~~I~~fG~~VNLgI~~~dVl~ 216 (240)
.++++.||+|.+-.|..+...
T Consensus 156 ~l~~~v~~~~g~~~D~~h~~~ 176 (272)
T 2q02_A 156 QLIREAGSPFKVLLDTFHHHL 176 (272)
T ss_dssp HHHHHHTCCCEEEEEHHHHHH
T ss_pred HHHHHhCcCeEEEEEchHhhc
Confidence 899999965555465555443
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.11 Score=48.68 Aligned_cols=123 Identities=17% Similarity=0.296 Sum_probs=86.3
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~-~~yl~~~k~lGF~~IEISdGti------ 76 (240)
++.+-||+||..+.+.+.|.+.++.++++ ++.- + .|+.+.-+|+.+ ++.++.+++.|++.|+++--+.
T Consensus 105 i~~i~fgGGtpt~l~~~~l~~ll~~i~~~~~~~~--~--~eitie~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~ 180 (457)
T 1olt_A 105 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNA--D--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR 180 (457)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEE--E--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHH
T ss_pred eEEEEEeCCCcccCCHHHHHHHHHHHHHhCCCCC--C--cEEEEEEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHH
Confidence 67788999999999999999999999873 1100 0 011111122222 5788999999999999864333
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.-+.++..+.|+.+++.||. +...+=. +. |. +|.+++.+.++..++.|.+
T Consensus 181 ~i~R~~~~~~~~~ai~~~r~~G~~~v~~dlI~--Gl----------------Pg-------et~e~~~~tl~~~~~l~~~ 235 (457)
T 1olt_A 181 LVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL----------------PK-------QTPESFAFTLKRVAELNPD 235 (457)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC----------------TT-------CCHHHHHHHHHHHHHHCCS
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEc--CC----------------CC-------CCHHHHHHHHHHHHhcCcC
Confidence 23567888999999999997 5554432 11 10 2578889999999999999
Q ss_pred EEEEe
Q 026320 152 MIMID 156 (240)
Q Consensus 152 ~ViiE 156 (240)
.|-+=
T Consensus 236 ~i~~y 240 (457)
T 1olt_A 236 RLSVF 240 (457)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 88764
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.012 Score=54.07 Aligned_cols=140 Identities=16% Similarity=0.160 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHhC-------CceecCCcHHHHH-HHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--ChhHHHHH
Q 026320 21 PFIEEVVKRAHQH-------DVYVSTGDWAEHL-IRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--PEETLLRY 86 (240)
Q Consensus 21 ~~l~eKi~l~~~~-------gV~v~~Gtl~E~a-~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----l--~~~~r~~l 86 (240)
..+.|.|+-.++. +|++++..|.+-- +... ...++.+.+.+.|+++|+||.|+.. + ++.....+
T Consensus 209 r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~--~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~ 286 (363)
T 3l5l_A 209 RFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLE--ESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPI 286 (363)
T ss_dssp HHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHH--HHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHH
T ss_pred HHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHH--HHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHH
Confidence 4567777777764 3355554333211 2222 4566778888899999999998642 1 22234556
Q ss_pred HHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEeccccccCCC
Q 026320 87 VRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHAD 165 (240)
Q Consensus 87 I~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g 165 (240)
++.+++. +++ +.--+| .. .| .+.+++.|++| ||.|++ +|.+..
T Consensus 287 ~~~ir~~-------~~i--PVi~~G--------gI-----------~s----~e~a~~~l~~G~aD~V~i-GR~~la--- 330 (363)
T 3l5l_A 287 AERVRRE-------AKL--PVTSAW--------GF-----------GT----PQLAEAALQANQLDLVSV-GRAHLA--- 330 (363)
T ss_dssp HHHHHHH-------HTC--CEEECS--------ST-----------TS----HHHHHHHHHTTSCSEEEC-CHHHHH---
T ss_pred HHHHHHH-------cCC--cEEEeC--------CC-----------CC----HHHHHHHHHCCCccEEEe-cHHHHh---
Confidence 6666662 211 111111 11 12 46777889999 999988 565543
Q ss_pred CccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhC
Q 026320 166 SLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYG 202 (240)
Q Consensus 166 ~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG 202 (240)
++|++.++.+.++.+.. +...+.|..|++.+|+
T Consensus 331 --nPdl~~k~~~~lg~~~~--~~~~~~~~~~~~~~~~ 363 (363)
T 3l5l_A 331 --DPHWAYFAAKELGVEKA--SWTLPAPYAHWLERYR 363 (363)
T ss_dssp --CTTHHHHHHHHTTCTTG--GGGSCHHHHHHHC---
T ss_pred --CchHHHHHHHHcCCCcc--cCCCCchhHhHhhccC
Confidence 26889999998885321 2345678888877664
|
| >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.13 Score=43.48 Aligned_cols=131 Identities=15% Similarity=0.156 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||++||+......-+. +..++-+.+++.|+++..-..... .+ .+.
T Consensus 24 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~-~~~~~~~~l~~~gl~i~~~~~~~~-~~-----~~~---------------- 80 (264)
T 1yx1_A 24 GQASFLPLLAMAGAQRVELREELFAGPP-DTEALTAAIQLQGLECVFSSPLEL-WR-----EDG---------------- 80 (264)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGGCSSCC-CHHHHHHHHHHTTCEEEEEEEEEE-EC-----TTS----------------
T ss_pred CHHHHHHHHHHcCCCEEEEEHHhcCCCH-HHHHHHHHHHHcCCEEEEecchhh-cC-----Cch----------------
Confidence 5788999999999999999755332223 666788889999998753211110 00 000
Q ss_pred cCH-HHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCC------chhHHHHHHHh---C
Q 026320 133 EDV-DLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATN------PRTSEWFIRRY---G 202 (240)
Q Consensus 133 ~~~-~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~------k~qQ~~~I~~f---G 202 (240)
+. +.+.+.++..-+.||..|.+-.- -+.... .-..+.++++..|+ +|.+|.-. ..+-..+++.. |
T Consensus 81 -~~~~~~~~~i~~A~~lGa~~v~~~~g-~~~~~~--~l~~l~~~a~~~Gv-~l~lEn~~~~~~~~~~~~~~ll~~v~~~~ 155 (264)
T 1yx1_A 81 -QLNPELEPTLRRAEACGAGWLKVSLG-LLPEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLERFFRLAERQQ 155 (264)
T ss_dssp -SBCTTHHHHHHHHHHTTCSEEEEEEE-CCCSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHcCCCEEEEecC-CCCcHH--HHHHHHHHHHhcCC-EEEEecCCCCCCCCHHHHHHHHHHHHhcC
Confidence 01 23344455555899999998753 222222 34456667777776 68888653 24566788888 8
Q ss_pred CCcccccCC
Q 026320 203 PKVNLFVDH 211 (240)
Q Consensus 203 ~~VNLgI~~ 211 (240)
++|-+-.|.
T Consensus 156 ~~vg~~~D~ 164 (264)
T 1yx1_A 156 LDLAMTFDI 164 (264)
T ss_dssp CSEEEEEET
T ss_pred CCeEEEEeh
Confidence 765444555
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.084 Score=46.86 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhCCceecC------CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 22 FIEEVVKRAHQHDVYVST------GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~------Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
.+++-++.+|++|+.+.. |- |.+-..+++.+.++.+.+.++|.+.|=+.|-.--+.+.+-.++|+.+++. +
T Consensus 122 ~~~~~i~~a~~~G~~v~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~-~ 198 (298)
T 2cw6_A 122 RFDAILKAAQSANISVRGYVSCALGC--PYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQE-V 198 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTCB--TTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeC--CcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHh-C
Confidence 567779999999998842 21 21112234467778888899999999999988889999999999999885 2
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRA 169 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~ 169 (240)
. ...+++.+ ..+ ...-+......++|||+.|=.=-.|+=. ..||..+
T Consensus 199 ~-~~~i~~H~-Hn~-------------------------~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~ 251 (298)
T 2cw6_A 199 P-LAALAVHC-HDT-------------------------YGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLAT 251 (298)
T ss_dssp C-GGGEEEEE-BCT-------------------------TSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBH
T ss_pred C-CCeEEEEE-CCC-------------------------CchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcCChhH
Confidence 1 11345532 111 1222556777799999976542246655 6899999
Q ss_pred HHHHHHHhccC
Q 026320 170 DIIAKVIGRLG 180 (240)
Q Consensus 170 d~v~~i~~~~~ 180 (240)
+.+-..+...|
T Consensus 252 E~lv~~l~~~g 262 (298)
T 2cw6_A 252 EDLVYMLEGLG 262 (298)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 88877776544
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.17 Score=44.95 Aligned_cols=128 Identities=15% Similarity=0.118 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 23 IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
+++-++.+|++|+.|. .|.-++ -..+|+.+.++++.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++. +.
T Consensus 126 ~~~~v~~a~~~G~~V~~~l~~~~~~e~~--~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~-~~ 202 (302)
T 2ftp_A 126 FVPVLEAARQHQVRVRGYISCVLGCPYD--GDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASE-VP 202 (302)
T ss_dssp HHHHHHHHHHTTCEEEEEEECTTCBTTT--BCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTT-SC
T ss_pred HHHHHHHHHHCCCeEEEEEEEEeeCCcC--CCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHh-CC
Confidence 4788999999999883 232111 12333456666666669999999999876678888888999999874 21
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccHH
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRAD 170 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~d 170 (240)
...++... ..+ ...-...+...+++||++|=+=-.|+=. ..||...+
T Consensus 203 -~~~l~~H~-Hn~-------------------------~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E 255 (302)
T 2ftp_A 203 -RERLAGHF-HDT-------------------------YGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASE 255 (302)
T ss_dssp -GGGEEEEE-BCT-------------------------TSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHH
T ss_pred -CCeEEEEe-CCC-------------------------ccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHH
Confidence 11344432 111 1223677888899999976333347766 78999988
Q ss_pred HHHHHHhccC
Q 026320 171 IIAKVIGRLG 180 (240)
Q Consensus 171 ~v~~i~~~~~ 180 (240)
.+-..+...|
T Consensus 256 ~lv~~l~~~g 265 (302)
T 2ftp_A 256 DVLYLLNGLE 265 (302)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhcC
Confidence 7777776554
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.17 Score=48.30 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=73.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
++.+++.+.+.|.+.|-|.+.+-++ +.-.+.|+.+++.|.+|..-+.--+ + . ..
T Consensus 102 ~~~~v~~a~~~Gvd~i~if~~~sd~--~ni~~~i~~ak~~G~~v~~~i~~~~-----~----~---------------~~ 155 (464)
T 2nx9_A 102 VDTFVERAVKNGMDVFRVFDAMNDV--RNMQQALQAVKKMGAHAQGTLCYTT-----S----P---------------VH 155 (464)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECCC-----C----T---------------TC
T ss_pred hHHHHHHHHhCCcCEEEEEEecCHH--HHHHHHHHHHHHCCCEEEEEEEeee-----C----C---------------CC
Confidence 6889999999999999999887776 4556899999999988643332211 0 0 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.
T Consensus 156 ~~e~~~~~a~~l~~~Gad~I-----~l~DT~G~~~P~~v~~lv~~ 195 (464)
T 2nx9_A 156 NLQTWVDVAQQLAELGVDSI-----ALKDMAGILTPYAAEELVST 195 (464)
T ss_dssp CHHHHHHHHHHHHHTTCSEE-----EEEETTSCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEE-----EEcCCCCCcCHHHHHHHHHH
Confidence 58999999999999999866 46888898888888887753
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=95.06 E-value=0.29 Score=44.37 Aligned_cols=130 Identities=17% Similarity=0.190 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 21 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
+.+++-++.++++|..+..+ .|+- +-...++.+-+..+.+.++|.+.|=+.|-.--+.+.+-.++|+.++++ + +.
T Consensus 137 ~~~~~~v~~ak~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~-p~ 213 (337)
T 3ble_A 137 TDVSFVIEYAIKSGLKINVYLEDWSN-GFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQK-Y-PD 213 (337)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEETHHH-HHHHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHH-C-TT
T ss_pred HHHHHHHHHHHHCCCEEEEEEEECCC-CCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHh-c-CC
Confidence 46778899999999987754 3322 334455577888888999999999999988889999999999999885 2 12
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
..+++.+ .. |...-+-.+...++|||+.|=.=-.|+=...||...+.+-..+..
T Consensus 214 ~~i~~H~-Hn-------------------------d~GlA~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L~~ 267 (337)
T 3ble_A 214 IHFEFHG-HN-------------------------DYDLSVANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTIHD 267 (337)
T ss_dssp SCEEEEC-BC-------------------------TTSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHH
T ss_pred CeEEEEe-cC-------------------------CcchHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHHHH
Confidence 2345533 11 223336777888999999664333588889999998877766654
Q ss_pred c
Q 026320 179 L 179 (240)
Q Consensus 179 ~ 179 (240)
.
T Consensus 268 ~ 268 (337)
T 3ble_A 268 K 268 (337)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.12 Score=43.91 Aligned_cols=144 Identities=16% Similarity=0.149 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||+.||+..... .++..++.+.+++.|+++.+ +..-.+. .+. ..|+. ...
T Consensus 39 ~~~~~l~~~~~~G~~~vEl~~~~~---~~~~~~~~~~l~~~gl~v~~-~~~~~~~-~l~-~~d~~------------~r~ 100 (287)
T 3kws_A 39 SLNEKLDFMEKLGVVGFEPGGGGL---AGRVNEIKQALNGRNIKVSA-ICAGFKG-FIL-STDPA------------IRK 100 (287)
T ss_dssp SHHHHHHHHHHTTCCEEECBSTTC---GGGHHHHHHHHTTSSCEECE-EECCCCS-CTT-BSSHH------------HHH
T ss_pred CHHHHHHHHHHcCCCEEEecCCch---HHHHHHHHHHHHHcCCeEEE-EecCCCC-cCC-CCCHH------------HHH
Confidence 689999999999999999998743 45667788888889998754 2221100 010 11110 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccH-------HHHHH---HHhccCCCceEEe--cC-------Cch
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA-------DIIAK---VIGRLGLEKTMFE--AT-------NPR 192 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~-------d~v~~---i~~~~~~~~lifE--AP-------~k~ 192 (240)
...+.+.+.++..-+.||..|++-+- +-++..-..+. +.+.+ +++..|+ +|.+| .+ ...
T Consensus 101 ~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~~~~ 179 (287)
T 3kws_A 101 ECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGT-SVIFEPLNRKECFYLRQVA 179 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTC-CEEECCCCTTTCSSCCCHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCcccCcccCCHH
Confidence 12345555666666789999988542 22221000111 22222 2344455 68888 32 355
Q ss_pred hHHHHHHHhC-CCcccccCCCCch
Q 026320 193 TSEWFIRRYG-PKVNLFVDHSQVM 215 (240)
Q Consensus 193 qQ~~~I~~fG-~~VNLgI~~~dVl 215 (240)
+-..++++.| |+|.+-.|..+..
T Consensus 180 ~~~~ll~~v~~~~vg~~~D~~h~~ 203 (287)
T 3kws_A 180 DAASLCRDINNPGVRCMGDFWHMT 203 (287)
T ss_dssp HHHHHHHHHCCTTEEEEEEHHHHH
T ss_pred HHHHHHHHcCCCCeeEEeehHHHH
Confidence 6778999999 6666655554443
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.21 Score=42.08 Aligned_cols=144 Identities=13% Similarity=0.148 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-~evg~~~d~~~~~~~~~~ 125 (240)
.+++.++.++++||++||+..+. ..++.+...++.+.++++|+++.+ +....+. -... ..|+.
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~h~~~~~~~~-~~~~~-------- 82 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWEN-AFCHSGYLINLA-SPKDD-------- 82 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGG-EEEECCTTCCTT-CSSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcce-eEEecccccccC-CCCHH--------
Confidence 57788999999999999997532 145667888899999999999622 2221111 0111 11110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccH-------HHHHHHHhccCCCceEEecC---------
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAKVIGRLGLEKTMFEAT--------- 189 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-------d~v~~i~~~~~~~~lifEAP--------- 189 (240)
......+.+.+.++..-+.||..|.+-.-... +.-++ +.+.++++...-=+|.+|.-
T Consensus 83 ----~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~---~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~ 155 (287)
T 2x7v_A 83 ----IWQKSVELLKKEVEICRKLGIRYLNIHPGSHL---GTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGY 155 (287)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCCEEEECCEECT---TSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECS
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEEecCCCC---CCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCC
Confidence 00112455556666666789999988542111 11112 23344443311226778863
Q ss_pred CchhHHHHHHHhC--CCcccccCCCC
Q 026320 190 NPRTSEWFIRRYG--PKVNLFVDHSQ 213 (240)
Q Consensus 190 ~k~qQ~~~I~~fG--~~VNLgI~~~d 213 (240)
...+-..++++.+ |+|-+-+|..+
T Consensus 156 ~~~~~~~l~~~~~~~~~vg~~~D~~h 181 (287)
T 2x7v_A 156 KLEQLKKIRDLVDQRDRVAITYDTCH 181 (287)
T ss_dssp SHHHHHHHHHHCSCGGGEEEEEEHHH
T ss_pred CHHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 3455678999998 45544344433
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.2 Score=44.53 Aligned_cols=100 Identities=9% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------CChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLE--------IPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~--------l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+.++.+.+.|++.|-|.+++-+ ++.++ -.+.|+.+++.|..|-.+++.-++. .++
T Consensus 86 ~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~-----e~~------- 153 (302)
T 2ftp_A 86 LKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGC-----PYD------- 153 (302)
T ss_dssp HHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCB-----TTT-------
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeC-----CcC-------
Confidence 56788899999999999887744 34333 3577899999999987777663321 111
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+..|++.+++.+++..++||+.|-+ .|..|-..+..+.++++.+
T Consensus 154 --------~~~~~~~~~~~~~~~~~~G~d~i~l-----~DT~G~~~P~~~~~lv~~l 197 (302)
T 2ftp_A 154 --------GDVDPRQVAWVARELQQMGCYEVSL-----GDTIGVGTAGATRRLIEAV 197 (302)
T ss_dssp --------BCCCHHHHHHHHHHHHHTTCSEEEE-----EESSSCCCHHHHHHHHHHH
T ss_pred --------CCCCHHHHHHHHHHHHHcCCCEEEE-----eCCCCCcCHHHHHHHHHHH
Confidence 1226899999999999999998754 4666777777777776544
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.23 Score=44.33 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~ 99 (240)
.+++-++.++++|..|..+- |.+....++.+-++.+.+.++|.+.|-+.|-.--+.+.+-.++|+.+++. +.- ..
T Consensus 122 ~~~~~v~~a~~~g~~v~~~~--~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~ 198 (293)
T 3ewb_X 122 SIKHHISYARQKFDVVQFSP--EDATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRRE-IKQFDDI 198 (293)
T ss_dssp HHHHHHHHHHTTCSCEEEEE--ETGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHH-CTTGGGS
T ss_pred HHHHHHHHHHhCCCEEEEEe--ccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHh-cCCccCc
Confidence 36788899999999776532 22334455577888889999999999999999999999999999999884 110 01
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
.+++.+. . |....+-.+...++|||+. +++- |+=...||.-.+.+-..+.
T Consensus 199 ~l~~H~H-n-------------------------d~Gla~AN~laA~~aGa~~--vd~sv~GlGeraGN~~~E~vv~~L~ 250 (293)
T 3ewb_X 199 IFASHCH-D-------------------------DLGMATANALAAIENGARR--VEGTINGIGERAGNTALEEVAVALH 250 (293)
T ss_dssp EEEEECB-C-------------------------TTSCHHHHHHHHHHTTCCE--EEEBGGGCCTTTCBCBHHHHHHHHH
T ss_pred eEEEEeC-C-------------------------CcChHHHHHHHHHHhCCCE--EEeeccccccccccHhHHHHHHHHH
Confidence 2455331 1 2233467788889999994 5775 8888999999887665554
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.18 Score=43.51 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccc-ccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRD-RAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d-~~~~~~~~~ 124 (240)
.+++.++.++++||++||+..+. ..++.++..++-+.+++.|+++.+ .-.+.. ... ..| +
T Consensus 19 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~---~h~~~~~nl~-s~d~~-------- 86 (303)
T 3aal_A 19 MLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIV---VHAPYIINIG-NTTNL-------- 86 (303)
T ss_dssp THHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEE---EECCTTCCTT-CSSCH--------
T ss_pred cHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEE---EeccccccCC-CCCcH--------
Confidence 58899999999999999994322 124466777888889999995332 211110 011 001 0
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHH---hccC----CCceEEecC--------
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI---GRLG----LEKTMFEAT-------- 189 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~---~~~~----~~~lifEAP-------- 189 (240)
.......+.+.+.++.+-+.||..|++-.-... +.-+.+..+.++ ..+. -=+|.+|.-
T Consensus 87 ----~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~---~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~ 159 (303)
T 3aal_A 87 ----DTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHV---GAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECG 159 (303)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHTCSEEEECCEECT---TSCHHHHHHHHHHHHHHHCCSSCSCEEEEECCCCCTTEEC
T ss_pred ----HHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCC---CCCHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCccC
Confidence 001123566666777777889999988653221 112222333222 2221 137888875
Q ss_pred -CchhHHHHHHHhC--CCcccccCCCCc
Q 026320 190 -NPRTSEWFIRRYG--PKVNLFVDHSQV 214 (240)
Q Consensus 190 -~k~qQ~~~I~~fG--~~VNLgI~~~dV 214 (240)
.+.+-..+++..+ |+|-+.+|..++
T Consensus 160 ~t~~~~~~li~~v~~~~~vg~~lD~~H~ 187 (303)
T 3aal_A 160 RTFEELAYIIDGVAYNDKLSVCFDTCHT 187 (303)
T ss_dssp SSHHHHHHHHHHCTTGGGEEEEEEHHHH
T ss_pred CCHHHHHHHHHhcCCCCCEEEEEEccCH
Confidence 4456677999998 455554555444
|
| >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.45 Score=40.90 Aligned_cols=137 Identities=14% Similarity=0.087 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cC--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-EI--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-~l--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+++.++.++++||++||+..... .+ +.....++-+.+++.|+++.. ++. ..... ..++ ..
T Consensus 37 ~~~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~---~~~~~-~~~~--------~~--- 100 (296)
T 2g0w_A 37 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE-VEY---ITQWG-TAED--------RT--- 100 (296)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE-EEC---BCCCS-STTT--------CC---
T ss_pred CHHHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHHcCCceEe-ehh---hhccc-cCCh--------HH---
Confidence 799999999999999999985321 11 234556788888999999765 332 11111 0010 00
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCc--cHHHHHHHHhc-cCCCceEEec------CCchhHHHHHHH
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL--RADIIAKVIGR-LGLEKTMFEA------TNPRTSEWFIRR 200 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~--r~d~v~~i~~~-~~~~~lifEA------P~k~qQ~~~I~~ 200 (240)
.+..+.+.+.++..-+.||..|.+ +. ... -.+ -.+.+.++.+. .|+ +|.+|. ....+-..+++.
T Consensus 101 --~~~~~~~~~~i~~A~~lGa~~v~~-g~--~~~-~~~~~~~~~l~~l~~~a~Gv-~l~lE~~~~~~~~~~~~~~~l~~~ 173 (296)
T 2g0w_A 101 --AEQQKKEQTTFHMARLFGVKHINC-GL--LEK-IPEEQIIVALGELCDRAEEL-IIGLEFMPYSGVADLQAAWRVAEA 173 (296)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCEEEE-CC--CSC-CCHHHHHHHHHHHHHHHTTS-EEEEECCTTSSSCSHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHcCCCEEEE-cC--CCC-CCHHHHHHHHHHHHHHhcCC-EEEEEecCCCCCCCHHHHHHHHHH
Confidence 011345555666666789999988 32 211 111 12223333322 344 677886 345566789999
Q ss_pred hCC-CcccccCCC
Q 026320 201 YGP-KVNLFVDHS 212 (240)
Q Consensus 201 fG~-~VNLgI~~~ 212 (240)
.|+ +|-+-+|..
T Consensus 174 v~~~~vgl~~D~~ 186 (296)
T 2g0w_A 174 CGRDNAQLICDTW 186 (296)
T ss_dssp HTCTTEEEEEEHH
T ss_pred hCCCCeEEEEehh
Confidence 985 444434443
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.28 Score=43.12 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcc--------cCChhH----HHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSL--------EIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti--------~l~~~~----r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+-++.+.+.|++.|-|+..+- ..+.++ -.+.|+.+++.|+.|-.+++.-++. . |
T Consensus 82 ~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~-----e-~------- 148 (295)
T 1ydn_A 82 MKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVEC-----P-Y------- 148 (295)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEE-----T-T-------
T ss_pred HHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecC-----C-c-------
Confidence 3556788899999999986332 344443 2456899999999987777653210 1 1
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
++..+++++.+.++...++||+.|-+= |..|...+..+.++++.+
T Consensus 149 -------~~~~~~~~~~~~~~~~~~~G~d~i~l~-----Dt~G~~~P~~~~~lv~~l 193 (295)
T 1ydn_A 149 -------DGPVTPQAVASVTEQLFSLGCHEVSLG-----DTIGRGTPDTVAAMLDAV 193 (295)
T ss_dssp -------TEECCHHHHHHHHHHHHHHTCSEEEEE-----ETTSCCCHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHHhcCCCEEEec-----CCCCCcCHHHHHHHHHHH
Confidence 012268999999999999999987653 666767777766666543
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.47 Score=41.98 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=80.5
Q ss_pred hHHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~y-l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
-++.| +++++..|-|+|=+-.. .++.++..++++.+++.|+.+..|+.
T Consensus 122 iid~~qv~~A~~~GAD~VlLi~a--~l~~~~l~~l~~~a~~lGl~~lvev~----------------------------- 170 (272)
T 3qja_A 122 VVQPYQIHEARAHGADMLLLIVA--ALEQSVLVSMLDRTESLGMTALVEVH----------------------------- 170 (272)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCEEEEEES-----------------------------
T ss_pred ccCHHHHHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHCCCcEEEEcC-----------------------------
Confidence 47788 99999999999988544 45677788899999999998876542
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCCc-hhHHHHHHHhCCCccc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~-~lifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
|+ +++++.+++||++|-+-.|..-. -.+.-+.+.++...++.+ -++-|-=-. ..+..-+...|.+-=+
T Consensus 171 --t~----ee~~~A~~~Gad~IGv~~r~l~~--~~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~~l~~~Gadgvl 240 (272)
T 3qja_A 171 --TE----QEADRALKAGAKVIGVNARDLMT--LDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVL 240 (272)
T ss_dssp --SH----HHHHHHHHHTCSEEEEESBCTTT--CCBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred --CH----HHHHHHHHCCCCEEEECCCcccc--cccCHHHHHHHHHhCcccCEEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 12 33455568899999998763211 123345677787777633 455665544 5677777888876444
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.86 Score=38.23 Aligned_cols=128 Identities=11% Similarity=0.151 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 125 (240)
.+++.++.++++||++||+.... ..++.++..++-+.+++.|+.. +.+..+.. ...+ |+.
T Consensus 15 ~~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~---~~~h~~~~~~l~s--~~~-------- 81 (270)
T 3aam_A 15 GVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLP---AVIHASYLVNLGA--EGE-------- 81 (270)
T ss_dssp HHHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCC---EEEECCTTCCTTC--SST--------
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCce---EEEecCcccCCCC--CHH--------
Confidence 58888999999999999995532 2455778888889999999932 22221110 1111 110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc----cCCCceEEecC---------Cch
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR----LGLEKTMFEAT---------NPR 192 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~----~~~~~lifEAP---------~k~ 192 (240)
....+.+.+.+.++..-+.||..|++-.-.. .. +.-.+.+.++++. .|+ +|.+|.- ...
T Consensus 82 ----~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~--~~~~~~l~~l~~~a~~~~gv-~l~lEn~~~~~~~~~~~~~ 153 (270)
T 3aam_A 82 ----LWEKSVASLADDLEKAALLGVEYVVVHPGSG-RP--ERVKEGALKALRLAGVRSRP-VLLVENTAGGGEKVGARFE 153 (270)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCCEEEECCCBS-CH--HHHHHHHHHHHHHHTCCSSS-EEEEECCCCCTTBSCCSHH
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CH--HHHHHHHHHHHHhhcccCCC-EEEEecCCCCCCccCCCHH
Confidence 1122456677777777788999998865322 11 1122334444433 343 7888875 344
Q ss_pred hHHHHHHHh
Q 026320 193 TSEWFIRRY 201 (240)
Q Consensus 193 qQ~~~I~~f 201 (240)
+-..+++..
T Consensus 154 ~~~~l~~~v 162 (270)
T 3aam_A 154 ELAWLVADT 162 (270)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHHhC
Confidence 556677776
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.49 Score=46.06 Aligned_cols=93 Identities=22% Similarity=0.283 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
.+.+++.+.+.|.+.|-|.+.+=++ +.-.+.|+.+++.|..|-.-+.-. .+ . .-
T Consensus 119 ~~~~ve~a~~aGvd~vrIf~s~sd~--~ni~~~i~~ak~~G~~v~~~i~~~-----~~----~---------------~~ 172 (539)
T 1rqb_A 119 VDRFVDKSAENGMDVFRVFDAMNDP--RNMAHAMAAVKKAGKHAQGTICYT-----IS----P---------------VH 172 (539)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEECC-----CS----T---------------TC
T ss_pred cHHHHHHHHhCCCCEEEEEEehhHH--HHHHHHHHHHHHCCCeEEEEEEee-----eC----C---------------CC
Confidence 7889999999999999999888777 455689999999998753322221 11 0 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
+++.+++.+++-.++||+.| .|+|..|-..+..+.++++
T Consensus 173 ~~e~~~~~a~~l~~~Gad~I-----~L~DT~G~~~P~~v~~lv~ 211 (539)
T 1rqb_A 173 TVEGYVKLAGQLLDMGADSI-----ALKDMAALLKPQPAYDIIK 211 (539)
T ss_dssp CHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEE-----EeCCCCCCcCHHHHHHHHH
Confidence 58999999999999999855 4788899999888888876
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.33 Score=40.83 Aligned_cols=145 Identities=10% Similarity=0.134 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHcCCcccceeeeecCCC-CCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKS-DIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~-evg~~~d~~~~~~~~~~ 125 (240)
.+++.++.++++||++||+..... .++.++..++-+.++++|+++.+ +..-.+.. ... ..|+.
T Consensus 13 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~l~-~~~~~-------- 82 (285)
T 1qtw_A 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQ-ILPHDSYLINLG-HPVTE-------- 82 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGG-BCCBCCTTCCTT-CSSHH--------
T ss_pred CHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCcee-EEecCCcccccC-CCCHH--------
Confidence 588999999999999999953322 35667888899999999998521 11111100 011 01110
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCC--Ccc---HHHHHHHHhc-cCCCceEEecC---------C
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHAD--SLR---ADIIAKVIGR-LGLEKTMFEAT---------N 190 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g--~~r---~d~v~~i~~~-~~~~~lifEAP---------~ 190 (240)
......+.+.+.++..-+.||..|.+-.-....... ... -+.+.+++++ .|+ +|.+|.- .
T Consensus 83 ----~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv-~l~lEn~~~~~~~~~~~ 157 (285)
T 1qtw_A 83 ----ALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGV-TAVIENTAGQGSNLGFK 157 (285)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSC-EEEEECCCCCTTBCCSS
T ss_pred ----HHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCC-EEEEecCCCCCCcccCC
Confidence 001234555566666667899999886532211100 001 1223444433 343 6888864 3
Q ss_pred chhHHHHHHHhC--CCcccccCCC
Q 026320 191 PRTSEWFIRRYG--PKVNLFVDHS 212 (240)
Q Consensus 191 k~qQ~~~I~~fG--~~VNLgI~~~ 212 (240)
..+-..+++..+ |+|-+.+|..
T Consensus 158 ~~~~~~l~~~v~~~~~~g~~~D~~ 181 (285)
T 1qtw_A 158 FEHLAAIIDGVEDKSRVGVCIDTC 181 (285)
T ss_dssp HHHHHHHHHHCSCGGGEEEEEEHH
T ss_pred HHHHHHHHHhhcCccceEEEEEhH
Confidence 355678899884 4444435543
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.27 Score=44.17 Aligned_cols=129 Identities=9% Similarity=0.090 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhCCceec------CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCC
Q 026320 22 FIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~------~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~ 95 (240)
.+++-++.++++|..+. .|--++- .-+++.+.++.+.+.++|.+.|=+.|-.--+.+.+-.++|+.+++. +
T Consensus 123 ~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~ 199 (307)
T 1ydo_A 123 ILKQVNNDAQKANLTTRAYLSTVFGCPYEK--DVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLAR-F 199 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCBTTTB--CCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEecCCcCC--CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh-C
Confidence 46788999999999884 2322211 2234467777788899999999999988889999999999999884 2
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc------CCCCccH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK------HADSLRA 169 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d------~~g~~r~ 169 (240)
. -..+++.+. .|...-+......++|||+.|=.=-.|+=. ..||...
T Consensus 200 ~-~~~l~~H~H--------------------------nd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~ 252 (307)
T 1ydo_A 200 P-ANQIALHFH--------------------------DTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAAT 252 (307)
T ss_dssp C-GGGEEEECB--------------------------GGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBH
T ss_pred C-CCeEEEEEC--------------------------CCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCCChhH
Confidence 1 123555321 122334677788899999865333347755 7899988
Q ss_pred HHHHHHHhccC
Q 026320 170 DIIAKVIGRLG 180 (240)
Q Consensus 170 d~v~~i~~~~~ 180 (240)
+.+-..+...|
T Consensus 253 E~lv~~L~~~g 263 (307)
T 1ydo_A 253 EDIVYMLEQMD 263 (307)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 87766665544
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=93.80 E-value=1.3 Score=40.32 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=97.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.+..|-+.||+-|=|.--. +|.++= .+++++++..|.-|--|+|.--+. |-+...+. -...+
T Consensus 86 e~~~~ai~~GFtSVMiDgS~--~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~-Ed~~~~~~-~~~~y--------- 152 (305)
T 1rvg_A 86 ESVLRALRAGFTSVMIDKSH--EDFETNVRETRRVVEAAHAVGVTVEAELGRLAGI-EEHVAVDE-KDALL--------- 152 (305)
T ss_dssp HHHHHHHHTTCSEEEECCTT--SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCS-CC-------CCTTC---------
T ss_pred HHHHHHHHcCCCeeeeCCCC--CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCc-cCCccccc-ccccc---------
Confidence 44556678999999885544 455443 367788888999999999984221 11100000 00111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec---ccccc--CCCCccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCCCc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCK--HADSLRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGPKV 205 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d--~~g~~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG~~V 205 (240)
.||++..+.+++ -|.|.+=+== -|.|. .+-.++.|.+++|-+.++.-=++==+. -|+..+..|+.||-++
T Consensus 153 -T~Peea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~ 228 (305)
T 1rvg_A 153 -TNPEEARIFMER---TGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEI 228 (305)
T ss_dssp -CCHHHHHHHHHH---HCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCC
T ss_pred -CCHHHHHHHHHH---HCCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhcccc
Confidence 378888877764 5888665432 28998 566899999999999887443443333 4777889999999998
Q ss_pred cc--ccCCCCchhhhhhhCcc
Q 026320 206 NL--FVDHSQVMDLECLRGRN 224 (240)
Q Consensus 206 NL--gI~~~dVl~LE~LR~~~ 224 (240)
.= ||+.+++- +|.+.|+
T Consensus 229 ~~~~G~p~e~i~--~ai~~GV 247 (305)
T 1rvg_A 229 GEAAGIHPEDIK--KAISLGI 247 (305)
T ss_dssp CSCBCCCHHHHH--HHHHTTE
T ss_pred ccCCCCCHHHHH--HHHHCCC
Confidence 76 47766653 2444443
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.29 Score=41.55 Aligned_cols=146 Identities=12% Similarity=0.170 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
.+++.++.++++||+.||+....+ .++.++..++-+.+++.|+++..-.+... ..... ..|+. ..
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~l~-~~d~~------------~r 83 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSA-EQNLS-SPDPD------------IR 83 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCG-GGCTT-CSCHH------------HH
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCC-CcCCC-CCCHH------------HH
Confidence 689999999999999999997643 56788888999999999999866222100 00011 11110 00
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec-ccc---ccCCCCccHHH-------HHHH---HhccCCCceEEecC--------
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS-DDV---CKHADSLRADI-------IAKV---IGRLGLEKTMFEAT-------- 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa-rgi---~d~~g~~r~d~-------v~~i---~~~~~~~~lifEAP-------- 189 (240)
....+.+.+.++..-+.||..|.+-- .|. +.. +.-+++. +.++ ++..|+ +|.+|.-
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lEn~~~~~~~~~ 161 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTK-TIDKKGDWERSVESVREVAKVAEACGV-DFCLEVLNRFENYLI 161 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTS-CCCHHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCCTTTCSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEecCcccCccc
Confidence 11234555556666678999997521 111 111 1112211 2222 334454 5888853
Q ss_pred -CchhHHHHHHHhCC-CcccccCCCCc
Q 026320 190 -NPRTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 190 -~k~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
...+-..+++..++ +|-+-+|..+.
T Consensus 162 ~~~~~~~~l~~~v~~~~vg~~~D~~h~ 188 (294)
T 3vni_A 162 NTAQEGVDFVKQVDHNNVKVMLDTFHM 188 (294)
T ss_dssp CSHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred CCHHHHHHHHHHcCCCCEEEEEEhhhh
Confidence 34567789999984 44443555443
|
| >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.42 Score=40.69 Aligned_cols=144 Identities=12% Similarity=0.138 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeee--ecC--CCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV--MFN--KSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~--k~~--~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+++.++.++++||+.||+..... ...+..++-+.+++.|+++.+ ++. .++ ..... ..|+.
T Consensus 42 ~~~~~l~~~~~~G~~~vEl~~~~~--~~~~~~~~~~~l~~~gl~~~~-~~~~~p~~~~~~~l~-~~d~~----------- 106 (290)
T 2zvr_A 42 DLRKGMELAKRVGYQAVEIAVRDP--SIVDWNEVKILSEELNLPICA-IGTGQAYLADGLSLT-HPNDE----------- 106 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCG--GGSCHHHHHHHHHHHTCCEEE-EECTHHHHTTCCCTT-CSSHH-----------
T ss_pred CHHHHHHHHHHhCCCEEEEcCCCc--chhhHHHHHHHHHHcCCeEEE-EeccCccccCCCCCC-CCCHH-----------
Confidence 688999999999999999986532 235566788888999998744 222 000 00010 01110
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHH-------HHHHHhccCCCceEEecC---------Cch
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADI-------IAKVIGRLGLEKTMFEAT---------NPR 192 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~-------v~~i~~~~~~~~lifEAP---------~k~ 192 (240)
......+.+.+.++..-+.||..|+.-..|.+. +.-+.+. +.++.+...-=+|.+|.- ...
T Consensus 107 -~r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~--~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn~~~~~~~~~~~~~ 183 (290)
T 2zvr_A 107 -IRKKAIERVVKHTEVAGMFGALVIIGLVRGRRE--GRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINTID 183 (290)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCT--TSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCSHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCEEEecCCCCCC--CcCHHHHHHHHHHHHHHHHHHhccCEEEEEeCCCcCccccCCHH
Confidence 001124555666666667899998832124321 2122222 223322211146888863 456
Q ss_pred hHHHHHHHhCC-CcccccCCCCc
Q 026320 193 TSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 193 qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
+-..++++.|+ +|-+-.|....
T Consensus 184 ~~~~l~~~~~~~~vgl~~D~~h~ 206 (290)
T 2zvr_A 184 DALRILRKINSNRVGILADTFHM 206 (290)
T ss_dssp HHHHHHHHHCCTTEEEEEEHHHH
T ss_pred HHHHHHHHcCCCCEEEEEehhHh
Confidence 77789999984 55443554433
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.59 E-value=1.2 Score=39.91 Aligned_cols=143 Identities=13% Similarity=0.132 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 45 ~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGv-------g-------------- 101 (315)
T 3na8_A 45 PALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTI--VSV-------S-------------- 101 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C--------------
Confidence 368889999999999999776543 479999999999999883 1 1111 122 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~ 176 (240)
..+..+.|+.++..-++|||-|++=.- -+|+. .-++..+.+.+++
T Consensus 102 ------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~ 175 (315)
T 3na8_A 102 ------DLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIV 175 (315)
T ss_dssp ------CSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHH
Confidence 124688899999999999999999652 13663 2367788888885
Q ss_pred hccCCCce--EEec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKT--MFEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~l--ifEA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.+.| +| |=|+ .+-.+...+++..++++.+.--.++ +.+++|..|--|
T Consensus 176 a~~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~D~-~~l~~l~~G~~G 225 (315)
T 3na8_A 176 REVD--NVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNP-LALEAFVAGAKG 225 (315)
T ss_dssp HHST--TEEEEEECSSCHHHHHHHHHHTTTCSCEEECCGG-GHHHHHHHTCSE
T ss_pred hcCC--CEEEEECCCCCHHHHHHHHHHcCCCEEEEeCchH-HHHHHHHCCCCE
Confidence 5555 23 2244 4566777888888888777654444 458888866433
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.49 E-value=2 Score=38.55 Aligned_cols=145 Identities=12% Similarity=0.089 Sum_probs=101.3
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 43 ~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGv-------g-------------- 99 (315)
T 3si9_A 43 KAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVV--AGA-------G-------------- 99 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C--------------
Confidence 36888899999999999965443 3489999999999999883 1 1111 122 0
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~ 176 (240)
..+..+.|+.++..-++|||-|++=.- -+|+. .-++..+.+.++.
T Consensus 100 ------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 173 (315)
T 3si9_A 100 ------SNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNIPSRSVIDMAVETMRDLC 173 (315)
T ss_dssp ------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeCchhhCCCCCHHHHHHHH
Confidence 114688899999999999999998662 13653 3467788999888
Q ss_pred hccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
++.| +-=+=.-..+-.+...++++.+++..+.- -+|-+.+++|..|--|
T Consensus 174 ~~~pnIvgiKdssgd~~~~~~l~~~~~~~f~v~~-G~d~~~l~~l~~G~~G 223 (315)
T 3si9_A 174 RDFKNIIGVKDATGKIERASEQREKCGKDFVQLS-GDDCTALGFNAHGGVG 223 (315)
T ss_dssp HHCTTEEEEEECSCCTHHHHHHHHHHCSSSEEEE-SCGGGHHHHHHTTCCE
T ss_pred hhCCCEEEEEeCCCCHHHHHHHHHHcCCCeEEEe-cCHHHHHHHHHcCCCE
Confidence 6565 21122234567777888899998877753 3455678888876444
|
| >3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.3 Score=42.64 Aligned_cols=87 Identities=10% Similarity=0.098 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCC------cccC-----ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG------SLEI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG------ti~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
.+++.++.++++||++||+... ...+ +.++..++-+.+++.|+++.+ ++...+.... ++
T Consensus 37 ~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~-~~~~~~~~~~----~~----- 106 (305)
T 3obe_A 37 DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRISS-SHLTPSLREY----TK----- 106 (305)
T ss_dssp THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEEEE-EBCCCSCCCC----CG-----
T ss_pred CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeEEE-eecccccccc----ch-----
Confidence 6999999999999999999853 1222 223667888889999999754 2221111100 00
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
..+ ....+.+-+.++.+-+.||..|++-
T Consensus 107 ---~~~----~~~~~~~~~~i~~A~~lG~~~v~~~ 134 (305)
T 3obe_A 107 ---ENM----PKFDEFWKKATDIHAELGVSCMVQP 134 (305)
T ss_dssp ---GGH----HHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred ---hhH----HHHHHHHHHHHHHHHHcCCCEEEeC
Confidence 000 1123445555555667899999984
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=93.21 E-value=0.47 Score=41.80 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=80.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++..|-|+|=+.-. .++.++..++++.+++.|+.++.|+.-
T Consensus 116 i~ea~~~GAD~ilLi~a--~l~~~~l~~l~~~a~~lGl~~lvEv~~---------------------------------- 159 (251)
T 1i4n_A 116 VKLASSVGADAILIIAR--ILTAEQIKEIYEAAEELGMDSLVEVHS---------------------------------- 159 (251)
T ss_dssp HHHHHHTTCSEEEEEGG--GSCHHHHHHHHHHHHTTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEecc--cCCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 45599999999988776 467788999999999999999988764
Q ss_pred HHHHHHHHHHc-CCcEEEEeccccccCCCCccHHHHHHHHhccCCCc-eEEecCCc-hhHHHHHHHhCCCc
Q 026320 138 LIRRAERCLEA-GADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEK-TMFEATNP-RTSEWFIRRYGPKV 205 (240)
Q Consensus 138 ~i~~~~~dLeA-GA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~-lifEAP~k-~qQ~~~I~~fG~~V 205 (240)
.+.+++.+++ |++.|-|.-|++-.- ...-+...+++..++.+. +|-|+=-. ..+...+... .+.
T Consensus 160 -~eE~~~A~~l~g~~iIGinnr~l~t~--~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~a 226 (251)
T 1i4n_A 160 -REDLEKVFSVIRPKIIGINTRDLDTF--EIKKNVLWELLPLVPDDTVVVAESGIKDPRELKDLRGK-VNA 226 (251)
T ss_dssp -HHHHHHHHTTCCCSEEEEECBCTTTC--CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHHHHTTT-CSE
T ss_pred -HHHHHHHHhcCCCCEEEEeCcccccC--CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHHHHHh-CCE
Confidence 3557788999 999999999986432 344556677888887654 55577643 5555555555 443
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.37 Score=43.61 Aligned_cols=113 Identities=14% Similarity=0.184 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--------------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG--------------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG--------------ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~ 118 (240)
..+.|++.+|+.||..| ++== -..|..++-.++|+++++.||...+ =+
T Consensus 109 ~~g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~--~v--------------- 170 (286)
T 2p10_A 109 VMSTFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTP--YV--------------- 170 (286)
T ss_dssp CHHHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECC--EE---------------
T ss_pred CHHHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEE--ec---------------
Confidence 58999999999999999 8776 3357778888999999998886444 11
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc----ccccCCCCccH----HHHHHHH---hccCCC-ceEE
Q 026320 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----DVCKHADSLRA----DIIAKVI---GRLGLE-KTMF 186 (240)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar----gi~d~~g~~r~----d~v~~i~---~~~~~~-~lif 186 (240)
.+ .++++.-.+||+|.|.+|-- |.....-.+.. +.++++. .++.++ .+|.
T Consensus 171 --------------~~----~eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc 232 (286)
T 2p10_A 171 --------------FS----PEDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILS 232 (286)
T ss_dssp --------------CS----HHHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEE
T ss_pred --------------CC----HHHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEe
Confidence 12 56777778999999999986 54433322222 2444444 445455 4555
Q ss_pred ec-CC-chhHHHHHHHh
Q 026320 187 EA-TN-PRTSEWFIRRY 201 (240)
Q Consensus 187 EA-P~-k~qQ~~~I~~f 201 (240)
-+ |- ..+-+.++.+.
T Consensus 233 ~gGpIstpeDv~~~l~~ 249 (286)
T 2p10_A 233 HGGPIANPEDARFILDS 249 (286)
T ss_dssp ESTTCCSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhc
Confidence 66 53 23345555555
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.56 Score=42.44 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccce
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
+..++-++.++++|+.+... +|-+....++.+.+..+.+.+.|.+.|=+.|-+-.+.+.+-.++|+.++++- .....
T Consensus 120 ~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~-~~~~p 196 (345)
T 1nvm_A 120 DVSKQHIEYARNLGMDTVGF--LMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVL-KPETQ 196 (345)
T ss_dssp GGGHHHHHHHHHHTCEEEEE--EESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHS-CTTSE
T ss_pred HHHHHHHHHHHHCCCEEEEE--EEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhc-CCCce
Confidence 57888999999999866542 1222233445777888888899999999999888888888899999998851 11223
Q ss_pred eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHhc
Q 026320 101 FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 101 ~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~~ 178 (240)
+++.+. . |...-+......++|||+. |++- |+=...||...+.+-..+..
T Consensus 197 i~~H~H-n-------------------------~~G~avAn~laA~~aGa~~--vd~tv~GlG~~aGN~~le~lv~~L~~ 248 (345)
T 1nvm_A 197 VGMHAH-H-------------------------NLSLGVANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVAER 248 (345)
T ss_dssp EEEECB-C-------------------------TTSCHHHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHHHH
T ss_pred EEEEEC-C-------------------------CccHHHHHHHHHHHcCCCE--EEecchhccCCccCcCHHHHHHHHHh
Confidence 555331 1 2233377788889999986 5765 77778899998877666665
Q ss_pred cC
Q 026320 179 LG 180 (240)
Q Consensus 179 ~~ 180 (240)
.|
T Consensus 249 ~g 250 (345)
T 1nvm_A 249 LG 250 (345)
T ss_dssp HT
T ss_pred cC
Confidence 44
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.37 Score=41.48 Aligned_cols=126 Identities=12% Similarity=0.157 Sum_probs=76.8
Q ss_pred cccChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhC----C----------c------hHHHHHHHHHHcCCCEEEecCC
Q 026320 16 SLMPKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNG----P----------S------AFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg----~----------~------~~~~yl~~~k~lGF~~IEISdG 74 (240)
.|+++....+.-.-|.+.|. -+..|++-.+.-.+. | + ...+-++++.+.|.|.|-+..
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~- 109 (229)
T 3q58_A 31 PMDKPEIVAAMAQAAASAGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDA- 109 (229)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEEEESHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEEC-
T ss_pred CCCCcchHHHHHHHHHHCCCcEEEECCHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECc-
Confidence 34555666666667777776 344454322211110 0 0 011236788999999996644
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 75 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 75 ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
+.-.+++...++++.+++.|+.+..++. + .+.+++..++||++|.
T Consensus 110 ~~~~~p~~l~~~i~~~~~~g~~v~~~v~-------------------------------t----~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 110 SFRSRPVDIDSLLTRIRLHGLLAMADCS-------------------------------T----VNEGISCHQKGIEFIG 154 (229)
T ss_dssp CSSCCSSCHHHHHHHHHHTTCEEEEECS-------------------------------S----HHHHHHHHHTTCSEEE
T ss_pred cccCChHHHHHHHHHHHHCCCEEEEecC-------------------------------C----HHHHHHHHhCCCCEEE
Confidence 4444556777899999998887665432 1 4566778899999998
Q ss_pred EeccccccC--CCCccHHHHHHHHh
Q 026320 155 IDSDDVCKH--ADSLRADIIAKVIG 177 (240)
Q Consensus 155 iEargi~d~--~g~~r~d~v~~i~~ 177 (240)
+-.+|.... ......+++.++.+
T Consensus 155 ~~~~g~t~~~~~~~~~~~li~~l~~ 179 (229)
T 3q58_A 155 TTLSGYTGPITPVEPDLAMVTQLSH 179 (229)
T ss_dssp CTTTTSSSSCCCSSCCHHHHHHHHT
T ss_pred ecCccCCCCCcCCCCCHHHHHHHHH
Confidence 876765432 12334566666654
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=92.85 E-value=1.3 Score=39.09 Aligned_cols=86 Identities=20% Similarity=0.340 Sum_probs=58.7
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCc----eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-- 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV----~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-- 77 (240)
+..+.|.+|--.+.+ .+.+.++.+++.+. .+.| |+++ +++++.+++.|++.|.||=-+.+
T Consensus 67 ~~~i~~tGGEPll~~--~l~~li~~~~~~~~~~~i~i~TNG~ll-----------~~~~~~L~~~g~~~v~iSld~~~~~ 133 (340)
T 1tv8_A 67 VKKIRITGGEPLMRR--DLDVLIAKLNQIDGIEDIGLTTNGLLL-----------KKHGQKLYDAGLRRINVSLDAIDDT 133 (340)
T ss_dssp CCEEEEESSCGGGST--THHHHHHHHTTCTTCCEEEEEECSTTH-----------HHHHHHHHHHTCCEEEEECCCSSHH
T ss_pred CCEEEEeCCCccchh--hHHHHHHHHHhCCCCCeEEEEeCccch-----------HHHHHHHHHCCCCEEEEecCCCCHH
Confidence 445667777776665 46677777777642 3334 5543 34667778899999999976652
Q ss_pred ---------CChhHHHHHHHHHHHcCCcccceeee
Q 026320 78 ---------IPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 78 ---------l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
.+.+...+.|+.+++.|+.+...+-+
T Consensus 134 ~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv 168 (340)
T 1tv8_A 134 LFQSINNRNIKATTILEQIDYATSIGLNVKVNVVI 168 (340)
T ss_dssp HHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEE
Confidence 15677788999999999865555444
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.73 Score=41.77 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.++++++.+.+.|.+.|.++-|.- . .++++.+++.|+++. ++.
T Consensus 110 ~~~~~~~~~~~~g~~~V~~~~g~~---~---~~~i~~~~~~g~~v~----~~v--------------------------- 152 (369)
T 3bw2_A 110 GYDAKLAVLLDDPVPVVSFHFGVP---D---REVIARLRRAGTLTL----VTA--------------------------- 152 (369)
T ss_dssp THHHHHHHHHHSCCSEEEEESSCC---C---HHHHHHHHHTTCEEE----EEE---------------------------
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCC---c---HHHHHHHHHCCCeEE----EEC---------------------------
Confidence 479999999999999999987753 1 357777777776543 211
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.+ ++.++...++|||+|++++.
T Consensus 153 ~t----~~~a~~a~~~GaD~i~v~g~ 174 (369)
T 3bw2_A 153 TT----PEEARAVEAAGADAVIAQGV 174 (369)
T ss_dssp SS----HHHHHHHHHTTCSEEEEECT
T ss_pred CC----HHHHHHHHHcCCCEEEEeCC
Confidence 02 34566778999999999885
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.19 Score=45.68 Aligned_cols=130 Identities=19% Similarity=0.324 Sum_probs=77.6
Q ss_pred ccccccChhHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhH
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEET 82 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----l~~~~ 82 (240)
|-+..-....+.|.++-.++. +|++++..|.+--+. .+...++.+.+.+.|.++|+||+|... .++.-
T Consensus 187 GGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~--~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~ 264 (340)
T 3gr7_A 187 GGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLT--AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGY 264 (340)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC--GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCC--HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccc
Confidence 334333334566666666653 456677655432111 125667788888899999999988642 12333
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEeccccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVC 161 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEargi~ 161 (240)
..++++.+++. +. +|=++. |.. .| .+.+++.|++| ||.|++ +|.+.
T Consensus 265 ~~~~~~~ik~~-~~-iPVi~~---------------GgI-----------~s----~e~a~~~L~~G~aD~V~i-GR~~l 311 (340)
T 3gr7_A 265 QVPFAELIRRE-AD-IPTGAV---------------GLI-----------TS----GWQAEEILQNGRADLVFL-GRELL 311 (340)
T ss_dssp THHHHHHHHHH-TT-CCEEEE---------------SSC-----------CC----HHHHHHHHHTTSCSEEEE-CHHHH
T ss_pred cHHHHHHHHHH-cC-CcEEee---------------CCC-----------CC----HHHHHHHHHCCCeeEEEe-cHHHH
Confidence 45677777763 00 111111 111 12 46678889999 999998 46544
Q ss_pred cCCCCccHHHHHHHHhccCCC
Q 026320 162 KHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~~ 182 (240)
. +++++.++.+.++.+
T Consensus 312 a-----nPdl~~ki~~~l~~~ 327 (340)
T 3gr7_A 312 R-----NPYWPYAAARELGAK 327 (340)
T ss_dssp H-----CTTHHHHHHHHTTCC
T ss_pred h-----CchHHHHHHHHCCCC
Confidence 2 267889999888854
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=1 Score=39.59 Aligned_cols=115 Identities=22% Similarity=0.257 Sum_probs=79.1
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc------
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
+..+-|.+|...+++.+.+.+.++.+++.++.+.. |. .-++.++.+++.|++.+-+|=-+.
T Consensus 101 ~~~i~~~gGe~p~~~~~~~~~li~~i~~~~~~i~~s~g~-----------l~~e~l~~L~~ag~~~v~i~let~~~~~~~ 169 (348)
T 3iix_A 101 AKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGE-----------WPREYYEKWKEAGADRYLLRHETANPVLHR 169 (348)
T ss_dssp CSEEEEEESCCGGGTTHHHHHHHHHHHTTSCEEEEECCC-----------CCHHHHHHHHHHTCCEEECCCBCSCHHHHH
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHhcCceEEEecCC-----------CCHHHHHHHHHhCCCEEeeeeeeCCHHHHH
Confidence 44566777886666666788888888888776662 32 236778888999999998765444
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcE
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADM 152 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ 152 (240)
.-+.+++.+.|+.+++.|+.+.+ +.-.+.. . ++.+++.+.+....+.|++.
T Consensus 170 ~i~~~~~~~~~~~~i~~~~~~Gi~v~~--~~i~G~p----~-------------------et~e~~~~~~~~l~~l~~~~ 224 (348)
T 3iix_A 170 KLRPDTSFENRLNCLLTLKELGYETGA--GSMVGLP----G-------------------QTIDDLVDDLLFLKEHDFDM 224 (348)
T ss_dssp HHSTTSCHHHHHHHHHHHHHTTCEEEE--CBEESCT----T-------------------CCHHHHHHHHHHHHHHTCSE
T ss_pred HhCCCcCHHHHHHHHHHHHHhCCeecc--ceEEeCC----C-------------------CCHHHHHHHHHHHHhcCCCE
Confidence 23778999999999999986433 3322210 0 14577777777777778887
Q ss_pred EEE
Q 026320 153 IMI 155 (240)
Q Consensus 153 Vii 155 (240)
|-+
T Consensus 225 i~i 227 (348)
T 3iix_A 225 VGI 227 (348)
T ss_dssp ECC
T ss_pred Eee
Confidence 544
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.76 Score=39.91 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=45.0
Q ss_pred CcccEEEecCcc--------ccccChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 026320 3 QFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 69 (240)
Q Consensus 3 ~yID~lKfg~GT--------s~l~p~~~l~eKi~l~~~~-gV~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I 69 (240)
...|++-+.+++ ....+.+.+.+.++.+++. ++++. ++ + ..+.++.+.+.+.|.++|
T Consensus 124 ~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~-~---------~~~~~~a~~l~~~G~d~i 193 (311)
T 1ep3_A 124 ANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPN-V---------TDIVPIAKAVEAAGADGL 193 (311)
T ss_dssp TTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSC-S---------SCSHHHHHHHHHTTCSEE
T ss_pred CCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC-h---------HHHHHHHHHHHHcCCCEE
Confidence 357777777653 2334667788999988887 77444 33 2 256778889999999999
Q ss_pred EecCCc
Q 026320 70 ELNVGS 75 (240)
Q Consensus 70 EISdGt 75 (240)
-++++.
T Consensus 194 ~v~~~~ 199 (311)
T 1ep3_A 194 TMINTL 199 (311)
T ss_dssp EECCCE
T ss_pred EEeCCC
Confidence 998743
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.44 Score=42.19 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCC------------hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIP------------EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~------------~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
.+-++.+.+.|.+.|-|+..+-+.- .+.-.+.|+.+++.|++|-- .+.. .++..+
T Consensus 83 ~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~--~l~~---~~~~~~-------- 149 (298)
T 2cw6_A 83 LKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRG--YVSC---ALGCPY-------- 149 (298)
T ss_dssp HHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEE--EEET---TTCBTT--------
T ss_pred HHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE--EEEE---EeeCCc--------
Confidence 3457888899999999976554331 12445679999999998643 3321 121111
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
++..+++.+++.++...++||+.|- ++|..|-..+..+.++++
T Consensus 150 -------~~~~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~~~~lv~ 192 (298)
T 2cw6_A 150 -------EGKISPAKVAEVTKKFYSMGCYEIS-----LGDTIGVGTPGIMKDMLS 192 (298)
T ss_dssp -------TBSCCHHHHHHHHHHHHHTTCSEEE-----EEETTSCCCHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHHHHcCCCEEE-----ecCCCCCcCHHHHHHHHH
Confidence 1122689999999999999999774 568888888888887775
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.29 Score=40.80 Aligned_cols=141 Identities=17% Similarity=0.277 Sum_probs=79.3
Q ss_pred hHHHHHHHHHHcCCCEEEec-CCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELN-VGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEIS-dGti~--l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+++.++.++++||+.||+. ..... ++.....++.+.+++.|+++.+ ++.-.. ..+ .|+.
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~---~~~-~~~~------------ 77 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLA-LNALVF---FNN-RDEK------------ 77 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEE-EEEEEC---CSS-CCHH------------
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeee-eccccc---ccc-CCHH------------
Confidence 68899999999999999998 54331 2335566788888899998764 433211 110 1110
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccH-------HHHH---HHHhccCCCceEEecC--------Cc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIA---KVIGRLGLEKTMFEAT--------NP 191 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-------d~v~---~i~~~~~~~~lifEAP--------~k 191 (240)
......+.+.+.++..-+.||..|.+=+ |.... +.-+. +.+. +.++..|+ +|.+|.- ..
T Consensus 78 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~~ 154 (278)
T 1i60_A 78 GHNEIITEFKGMMETCKTLGVKYVVAVP-LVTEQ-KIVKEEIKKSSVDVLTELSDIAEPYGV-KIALEFVGHPQCTVNTF 154 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEC-CBCSS-CCCHHHHHHHHHHHHHHHHHHHGGGTC-EEEEECCCCTTBSSCSH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEec-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHhcCC-EEEEEecCCccchhcCH
Confidence 0011245555666666678999998832 22111 11011 1122 22333444 5777754 34
Q ss_pred hhHHHHHHHhCC-CcccccCCCC
Q 026320 192 RTSEWFIRRYGP-KVNLFVDHSQ 213 (240)
Q Consensus 192 ~qQ~~~I~~fG~-~VNLgI~~~d 213 (240)
.+-..++++.|+ +|-+-+|..+
T Consensus 155 ~~~~~l~~~~~~~~~g~~~D~~h 177 (278)
T 1i60_A 155 EQAYEIVNTVNRDNVGLVLDSFH 177 (278)
T ss_dssp HHHHHHHHHHCCTTEEEEEEHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEeEE
Confidence 567788999984 5544344433
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=92.45 E-value=0.72 Score=43.94 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=83.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++..|-|+|=+.-.. ++.++..++++.+++.|+.++.|++=
T Consensus 123 i~ea~~~GAD~ILLi~a~--l~~~~l~~l~~~a~~lgm~~LvEvh~---------------------------------- 166 (452)
T 1pii_A 123 IYLARYYQADACLLMLSV--LDDDQYRQLAAVAHSLEMGVLTEVSN---------------------------------- 166 (452)
T ss_dssp HHHHHHTTCSEEEEETTT--CCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEEccc--CCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 455899999999998874 66788999999999999999998865
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~-~lifEAP~-k~qQ~~~I~~fG~~VNL 207 (240)
.+++++.+++||+.|-|.-|++-. -++.-+...+++..+|.+ -+|-|+=- -.++...+..+ .+-=|
T Consensus 167 -~eE~~~A~~lga~iIGinnr~L~t--~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a~avL 234 (452)
T 1pii_A 167 -EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-ANGFL 234 (452)
T ss_dssp -HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-CSEEE
T ss_pred -HHHHHHHHHCCCCEEEEeCCCCCC--CCCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-CCEEE
Confidence 467788899999999999998733 245567778888888755 36777763 34566666665 44333
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.45 Score=43.05 Aligned_cols=125 Identities=14% Similarity=0.120 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~ 99 (240)
.+++-++.++++|..+..|- |.+-..+++.+-++.+.+.+.|.+.|-+.|-.--+.+.+-.++|+.+++. +.- ..
T Consensus 123 ~~~~~v~~a~~~g~~v~f~~--~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~~~ 199 (325)
T 3eeg_A 123 MAVAAVKQAKKVVHEVEFFC--EDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDN-VSNIDKA 199 (325)
T ss_dssp TTHHHHHHHHTTSSEEEEEE--ETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHH-CSCGGGS
T ss_pred HHHHHHHHHHHCCCEEEEEc--cccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHh-CCCCCce
Confidence 46688999999999887652 22223445577778888889999999999999999999999999999884 110 02
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHHh
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~~ 177 (240)
.+++.+ . .|....+-.+...++|||+.| ++- |+=...||...+.+-..+.
T Consensus 200 ~i~~H~-H-------------------------nd~GlA~AN~laA~~aGa~~v--d~tv~GlGer~GN~~lE~vv~~L~ 251 (325)
T 3eeg_A 200 ILSAHC-H-------------------------NDLGLATANSLAALQNGARQV--ECTINGIGERAGNTALEEVVMAME 251 (325)
T ss_dssp EEEECB-C-------------------------CTTSCHHHHHHHHHHHTCCEE--EEBGGGCCSTTCCCBHHHHHHHHH
T ss_pred EEEEEe-C-------------------------CCCCHHHHHHHHHHHhCCCEE--EEecccccccccchhHHHHHHHHH
Confidence 344432 1 122334677888899999974 664 8888899999887665554
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.43 E-value=3.7 Score=36.16 Aligned_cols=143 Identities=16% Similarity=0.105 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 21 ~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g-------------- 77 (292)
T 2vc6_A 21 VALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVI--AGA-------G-------------- 77 (292)
T ss_dssp HHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C--------------
Confidence 36888999999999999987543 3489999999999999873 2 1111 233 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccC---CC-CccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH---AD-SLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~---~g-~~r~d~v~~i~ 176 (240)
..+..+.|+.+++.-++||+-|++=.- | +|+. .| ++..+.+.+++
T Consensus 78 ------~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 151 (292)
T 2vc6_A 78 ------SNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIF 151 (292)
T ss_dssp ------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ------CccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 114688899999999999999998652 1 3553 23 67888888887
Q ss_pred hccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
++.+ +|+- |+ ++-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 152 ~~~p--nIvgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (292)
T 2vc6_A 152 EDCP--NVKGVXDATGNLLRPSLERMACGEDFNLL-TGEDGTALGYMAHGGHG 201 (292)
T ss_dssp HHCT--TEEEEEECSCCTHHHHHHHHHSCTTSEEE-ESCGGGHHHHHHTTCCE
T ss_pred hhCC--CEEEEecCCCCHHHHHHHHHHcCCCEEEE-ECchHHHHHHHHcCCCE
Confidence 5343 3432 44 46677778888888877664 33455678999877544
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.66 Score=39.03 Aligned_cols=146 Identities=12% Similarity=0.173 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
.+++.++.++++||+.||+..... ..+..+..++.+.+++.|+++..-.+.-. ..... ..|+. ..
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-~~~l~-~~d~~------------~r 83 (290)
T 2qul_A 18 DFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCCIGLKS-EYDFA-SPDKS------------VR 83 (290)
T ss_dssp CHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEEEEECG-GGCTT-CSCHH------------HH
T ss_pred cHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEecCCCC-CCCCC-CCCHH------------HH
Confidence 689999999999999999986542 33446777889999999999876322100 00111 11110 00
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec---ccc--ccCCCCccHHHHHHH----------HhccCCCceEEecC-------
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS---DDV--CKHADSLRADIIAKV----------IGRLGLEKTMFEAT------- 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi--~d~~g~~r~d~v~~i----------~~~~~~~~lifEAP------- 189 (240)
....+.+.+.++..-+.||..|.+=. .|. +.. +.-+++..+.+ ++..|+ +|.+|.-
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~ 161 (290)
T 2qul_A 84 DAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLD-MKDKRPYVDRAIESVRRVIKVAEDYGI-IYALEVVNRFEQWL 161 (290)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTT-CCCCHHHHHHHHHHHHTTHHHHHHHTC-EEEEECCCTTTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCC-cccHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeCccccccc
Confidence 11235555666666678999998532 122 111 11222222222 222343 6888852
Q ss_pred --CchhHHHHHHHhCC-CcccccCCCCc
Q 026320 190 --NPRTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 190 --~k~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
+..+-..++++.|+ +|-+..|..+.
T Consensus 162 ~~~~~~~~~l~~~~~~~~~g~~~D~~h~ 189 (290)
T 2qul_A 162 CNDAKEAIAFADAVDSPACKVQLDTFHM 189 (290)
T ss_dssp CCSHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred cCCHHHHHHHHHHcCCCCEEEEEEchhh
Confidence 34566788999984 55443554443
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=92.27 E-value=3.8 Score=36.60 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 44 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVi--aGv-------g-------------- 100 (314)
T 3qze_A 44 DSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVI--AGT-------G-------------- 100 (314)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C--------------
Confidence 368889999999999999775333 489999999999999873 1 1111 122 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~ 176 (240)
..+..+.|++++..-++||+.|++=.- -+|+. .-++..+.+.+++
T Consensus 101 ------~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 174 (314)
T 3qze_A 101 ------ANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLS 174 (314)
T ss_dssp ------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ------CcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 124688899999999999999999762 13654 3467788888887
Q ss_pred hccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~li--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+.| +++ =|+ ++-.+...++++.+++..+.-- .|-+.+++|..|--|
T Consensus 175 -~~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G-~d~~~l~~l~~Ga~G 223 (314)
T 3qze_A 175 -KVP--NIIGIKEATGDLQRAKEVIERVGKDFLVYSG-DDATAVELMLLGGKG 223 (314)
T ss_dssp -TST--TEEEEEECSCCHHHHHHHHHHSCTTSEEEES-CGGGHHHHHHTTCCE
T ss_pred -cCC--CEEEEEcCCCCHHHHHHHHHHcCCCeEEEec-ChHHHHHHHHCCCCE
Confidence 344 332 244 5667778888889988777533 344568899877544
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=0.51 Score=42.25 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=67.6
Q ss_pred cChhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 18 MPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
++.+.+++.++.+++. +.++.-+-+. ... .++++++.|.+.|++.|+++.|. | .++++.+++.|++
T Consensus 46 ~~~~~~~~~i~~i~~~~~~p~gvnl~~----~~~--~~~~~~~~a~~~g~d~V~~~~g~---p----~~~i~~l~~~g~~ 112 (332)
T 2z6i_A 46 APKEVVKANIDKIKSLTDKPFGVNIML----LSP--FVEDIVDLVIEEGVKVVTTGAGN---P----SKYMERFHEAGII 112 (332)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEEECT----TST--THHHHHHHHHHTTCSEEEECSSC---G----GGTHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEecC----CCC--CHHHHHHHHHHCCCCEEEECCCC---h----HHHHHHHHHcCCe
Confidence 3556677777766653 1111001111 022 57899999999999999999883 3 2467777777776
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHH
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAK 174 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~ 174 (240)
+..- + . + ++.++...++|||.|++++. |-... .....+++.+
T Consensus 113 v~~~--v---~--------------------------~----~~~a~~~~~~GaD~i~v~g~~~GG~~g-~~~~~~ll~~ 156 (332)
T 2z6i_A 113 VIPV--V---P--------------------------S----VALAKRMEKIGADAVIAEGMEAGGHIG-KLTTMTLVRQ 156 (332)
T ss_dssp EEEE--E---S--------------------------S----HHHHHHHHHTTCSCEEEECTTSSEECC-SSCHHHHHHH
T ss_pred EEEE--e---C--------------------------C----HHHHHHHHHcCCCEEEEECCCCCCCCC-CccHHHHHHH
Confidence 5522 1 0 1 34566677899999999975 22111 1233456666
Q ss_pred HHhcc
Q 026320 175 VIGRL 179 (240)
Q Consensus 175 i~~~~ 179 (240)
+.+.+
T Consensus 157 i~~~~ 161 (332)
T 2z6i_A 157 VATAI 161 (332)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 65544
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=92.16 E-value=0.57 Score=40.28 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=77.2
Q ss_pred cccChhHHHHHHHHHHhCCce-ecCCcHHHHHHHh-C---C----------c------hHHHHHHHHHHcCCCEEEecCC
Q 026320 16 SLMPKPFIEEVVKRAHQHDVY-VSTGDWAEHLIRN-G---P----------S------AFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~gV~-v~~Gtl~E~a~~q-g---~----------~------~~~~yl~~~k~lGF~~IEISdG 74 (240)
.|+++....+.-.-|.+.|.. +..|++-.+--.+ - | + ...+-++++.+.|.|.|-+...
T Consensus 31 pl~~~~~~~~~A~a~~~~Ga~~i~~~~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~ 110 (232)
T 3igs_A 31 PLDKPEIVAAMALAAEQAGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGT 110 (232)
T ss_dssp TTCSHHHHHHHHHHHHHTTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECC
T ss_pred CCCCcchHHHHHHHHHHCCCeEEEECCHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECcc
Confidence 345566666777777777773 3344432211111 0 0 0 0112367889999999976544
Q ss_pred cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEE
Q 026320 75 SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIM 154 (240)
Q Consensus 75 ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi 154 (240)
.-..++.-.++++.+++.|+.+..++. + .+.+++..++||++|.
T Consensus 111 -~~~~p~~l~~~i~~~~~~g~~v~~~v~-------------------------------t----~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 111 -ARQRPVAVEALLARIHHHHLLTMADCS-------------------------------S----VDDGLACQRLGADIIG 154 (232)
T ss_dssp -SSCCSSCHHHHHHHHHHTTCEEEEECC-------------------------------S----HHHHHHHHHTTCSEEE
T ss_pred -ccCCHHHHHHHHHHHHHCCCEEEEeCC-------------------------------C----HHHHHHHHhCCCCEEE
Confidence 334446677899999998877665432 1 4566778899999998
Q ss_pred EeccccccC--CCCccHHHHHHHHhc
Q 026320 155 IDSDDVCKH--ADSLRADIIAKVIGR 178 (240)
Q Consensus 155 iEargi~d~--~g~~r~d~v~~i~~~ 178 (240)
+-.+|.... ......+++.++.+.
T Consensus 155 ~~~~g~t~~~~~~~~~~~~i~~l~~~ 180 (232)
T 3igs_A 155 TTMSGYTTPDTPEEPDLPLVKALHDA 180 (232)
T ss_dssp CTTTTSSSSSCCSSCCHHHHHHHHHT
T ss_pred EcCccCCCCCCCCCCCHHHHHHHHhc
Confidence 876765432 123455667776653
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=91.89 E-value=1.4 Score=39.55 Aligned_cols=161 Identities=17% Similarity=0.113 Sum_probs=106.5
Q ss_pred CCceecCCcHH--HHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--CCcccceeeeec
Q 026320 33 HDVYVSTGDWA--EHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--GLKAKPKFAVMF 105 (240)
Q Consensus 33 ~gV~v~~Gtl~--E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G~~v~~E~g~k~ 105 (240)
.||.+.+=|.| +- -.=+.+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ++.-=.|+
T Consensus 13 ~Gv~~a~vTPF~~~d-g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv-- 88 (314)
T 3d0c_A 13 STISGINIVPFLEGT-REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNG-RATVVAGI-- 88 (314)
T ss_dssp SSEEECCCCCBCTTT-CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTT-SSEEEEEE--
T ss_pred CceEEeeeccccCCC-CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCC-CCeEEecC--
Confidence 57766665654 21 0111236889999999999999977543 3489999999999999873 1 11101122
Q ss_pred CCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cc
Q 026320 106 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DV 160 (240)
Q Consensus 106 ~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi 160 (240)
+. +..+.|++++..-++|||.|++=.- -+
T Consensus 89 -------------------------g~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiil 142 (314)
T 3d0c_A 89 -------------------------GY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSII 142 (314)
T ss_dssp -------------------------CS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEE
T ss_pred -------------------------Cc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 11 3577899999999999999998652 24
Q ss_pred ccCCCCccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCC--CcccccCCCCchhhhhhhCccCC
Q 026320 161 CKHADSLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGP--KVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~~~~~~~lif--EA-P~k~qQ~~~I~~fG~--~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
|+..|.+..+.+.++++ . .+|+- |+ ++-.+...+++..++ +..+.--.+++..+++|..|--|
T Consensus 143 Yn~tg~l~~~~~~~La~-~--pnIvgiKdssgd~~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~l~~G~~G 210 (314)
T 3d0c_A 143 YFKDAHLSDDVIKELAP-L--DKLVGIKYAINDIQRVTQVMRAVPKSSNVAFICGTAEKWAPFFYHAGAVG 210 (314)
T ss_dssp EECCTTSCTHHHHHHTT-C--TTEEEEEECCCCHHHHHHHHHHSCGGGCCEEEETTHHHHHHHHHHHTCCE
T ss_pred EeCCCCcCHHHHHHHHc-C--CCEEEEEeCCCCHHHHHHHHHhcCCCCCEEEEEeCcHHHHHHHHHcCCCE
Confidence 77556566788888863 3 45532 44 466677778888876 66664334443788888866433
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=91.86 E-value=2.6 Score=37.36 Aligned_cols=111 Identities=11% Similarity=0.094 Sum_probs=85.3
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++..|-|+|=+-.- .++.++..++++.+++.|+.++.|++-
T Consensus 135 i~ea~~~GAD~VlLi~a--~L~~~~l~~l~~~a~~lGl~~lvevh~---------------------------------- 178 (272)
T 3tsm_A 135 VYEARSWGADCILIIMA--SVDDDLAKELEDTAFALGMDALIEVHD---------------------------------- 178 (272)
T ss_dssp HHHHHHTTCSEEEEETT--TSCHHHHHHHHHHHHHTTCEEEEEECS----------------------------------
T ss_pred HHHHHHcCCCEEEEccc--ccCHHHHHHHHHHHHHcCCeEEEEeCC----------------------------------
Confidence 67789999999988665 457888889999999999999988742
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCC-ceEEecCC-chhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLE-KTMFEATN-PRTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~-~lifEAP~-k~qQ~~~I~~fG~~VNL 207 (240)
.+++++.+++||++|=+-.|.+.. -.+.-+...+++..++.+ -+|-|.=- ...+...+...|.+-=|
T Consensus 179 -~eEl~~A~~~ga~iIGinnr~l~t--~~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~~l~~~Ga~gvL 247 (272)
T 3tsm_A 179 -EAEMERALKLSSRLLGVNNRNLRS--FEVNLAVSERLAKMAPSDRLLVGESGIFTHEDCLRLEKSGIGTFL 247 (272)
T ss_dssp -HHHHHHHTTSCCSEEEEECBCTTT--CCBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHHHHHTTTCCEEE
T ss_pred -HHHHHHHHhcCCCEEEECCCCCcc--CCCChHHHHHHHHhCCCCCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 355677889999999888875522 234566777888888754 46777764 56778888888887655
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.84 E-value=2.8 Score=37.19 Aligned_cols=140 Identities=19% Similarity=0.199 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti----~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+.++++++-+-|.+.|=+. ||. .|+.++|.++++.+.+. | ..|+ +|+
T Consensus 26 ~l~~lv~~li~~Gv~gl~v~-GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv---------------------- 80 (300)
T 3eb2_A 26 VMGRLCDDLIQAGVHGLTPL-GSTGEFAYLGTAQREAVVRATIEAAQRRVPVV--AGV---------------------- 80 (300)
T ss_dssp HHHHHHHHHHHTTCSCBBTT-SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBE--EEE----------------------
T ss_pred HHHHHHHHHHHcCCCEEEEC-ccccCccccCHHHHHHHHHHHHHHhCCCCcEE--EeC----------------------
Confidence 67888888889999999544 554 69999999999999884 1 1121 122
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~ 176 (240)
+..+..+.++.+++.-++|||.|++=.- -+|+.= -++..+.+.++.
T Consensus 81 -----g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 81 -----ASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp -----EESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 0124688899999999999999999652 146642 257788888885
Q ss_pred hccCCCce--EEec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKT--MFEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~l--ifEA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+.| +| |=|+ ++-.+...+++..++++.++--.++ +.+++|..|--|
T Consensus 156 -~~p--nIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~-~~~~~l~~G~~G 204 (300)
T 3eb2_A 156 -EHP--RIRYIKDASTNTGRLLSIINRCGDALQVFSASAH-IPAAVMLIGGVG 204 (300)
T ss_dssp -TST--TEEEEEECSSBHHHHHHHHHHHGGGSEEEECTTS-CHHHHHHTTCCE
T ss_pred -cCC--CEEEEEcCCCCHHHHHHHHHHcCCCeEEEeCcHH-HHHHHHhCCCCE
Confidence 443 33 2244 4556677788888887777654444 448888876433
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.76 E-value=1.7 Score=38.92 Aligned_cols=101 Identities=20% Similarity=0.214 Sum_probs=72.4
Q ss_pred HHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCC
Q 026320 57 YVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
-.+..-+.|..+|-|=|+.. -+|.++.++-|+.+++.+- -+.|-++- ..|.
T Consensus 102 ~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~--~~~~~i~a-------Rtda---------- 162 (287)
T 3b8i_A 102 TVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARV--DPALTIIA-------RTNA---------- 162 (287)
T ss_dssp HHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCC--STTSEEEE-------EEET----------
T ss_pred HHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCC--CCCcEEEE-------echh----------
Confidence 33444458999999999874 3788899999999999865 23444421 1111
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEec
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEA 188 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEA 188 (240)
.....++.|++++...+|||+.|.+|+- -..+++.+|.+.++.--+|.|-
T Consensus 163 ----a~~gl~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~ii~~~ 212 (287)
T 3b8i_A 163 ----ELIDVDAVIQRTLAYQEAGADGICLVGV--------RDFAHLEAIAEHLHIPLMLVTY 212 (287)
T ss_dssp ----TTSCHHHHHHHHHHHHHTTCSEEEEECC--------CSHHHHHHHHTTCCSCEEEECT
T ss_pred ----hhcCHHHHHHHHHHHHHcCCCEEEecCC--------CCHHHHHHHHHhCCCCEEEeCC
Confidence 0124789999999999999999999963 2368899999988844447764
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.54 Score=44.43 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.+.+-++.++++|+.|..+ .|-++..+++.+-+.++.+.+.|.+.|-+.|-.--+.+.+-.++|+.+++. + ...+
T Consensus 152 ~~~~~v~~ak~~G~~V~~~--~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~-~--~~~i 226 (423)
T 3ivs_A 152 SATEVINFVKSKGIEVRFS--SEDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGV-V--SCDI 226 (423)
T ss_dssp HHHHHHHHHHTTTCEEEEE--EESGGGSCHHHHHHHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHH-C--SSEE
T ss_pred HHHHHHHHHHHCCCEEEEE--EccCcCCCHHHHHHHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhh-c--CCeE
Confidence 4556789999999987753 233334454556677788889999999999999888898989999999874 2 2245
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHH
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIA 173 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~ 173 (240)
++.+. . |....+-.+...++|||+ .|++- |+=+..||...+.+-
T Consensus 227 ~~H~H-n-------------------------d~GlAvAN~laAv~aGa~--~vd~ti~GlGERaGNa~Le~vv 272 (423)
T 3ivs_A 227 ECHFH-N-------------------------DTGMAIANAYCALEAGAT--HIDTSILGIGERNGITPLGALL 272 (423)
T ss_dssp EEEEB-C-------------------------TTSCHHHHHHHHHHTTCC--EEEEBGGGCSSTTCBCBHHHHH
T ss_pred EEEEC-C-------------------------CCchHHHHHHHHHHhCCC--EEEEecccccCcccchhHHHHH
Confidence 55431 1 122336777888999999 55664 898899998866553
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.15 Score=46.08 Aligned_cols=120 Identities=19% Similarity=0.292 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHhC-----CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-----CChhHHHHHHHHH
Q 026320 21 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-----IPEETLLRYVRLV 90 (240)
Q Consensus 21 ~~l~eKi~l~~~~-----gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~-----l~~~~r~~lI~~~ 90 (240)
..+.|.++-.++. +|++++..|.+--+. .+...++.+.+.+.|.++|+||+|+.. .+.....++++.+
T Consensus 195 r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~--~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~i 272 (338)
T 1z41_A 195 RFLREIIDEVKQVWDGPLFVRVSASDYTDKGLD--IADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKI 272 (338)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCC--HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEecCcccCCCCCC--HHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHH
Confidence 3456666666553 335556444331000 113456777888899999999999753 2222235667777
Q ss_pred HHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEeccccccCCCCccH
Q 026320 91 KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSDDVCKHADSLRA 169 (240)
Q Consensus 91 ~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEargi~d~~g~~r~ 169 (240)
++. +++. .--+| .. .| .+.+++.|++| ||.|++ +|.+..+ +
T Consensus 273 r~~-------~~iP--Vi~~G--------gi-----------~s----~~~a~~~l~~G~aD~V~i-GR~~i~n-----P 314 (338)
T 1z41_A 273 REQ-------ADMA--TGAVG--------MI-----------TD----GSMAEEILQNGRADLIFI-GRELLRD-----P 314 (338)
T ss_dssp HHH-------HCCE--EEECS--------SC-----------CS----HHHHHHHHHTTSCSEEEE-CHHHHHC-----T
T ss_pred HHH-------CCCC--EEEEC--------CC-----------CC----HHHHHHHHHcCCceEEee-cHHHHhC-----c
Confidence 662 2221 11011 11 12 46677788999 999988 5655432 5
Q ss_pred HHHHHHHhccC
Q 026320 170 DIIAKVIGRLG 180 (240)
Q Consensus 170 d~v~~i~~~~~ 180 (240)
+++.++.+.++
T Consensus 315 dl~~ki~~~~~ 325 (338)
T 1z41_A 315 FFARTAAKQLN 325 (338)
T ss_dssp THHHHHHHHTT
T ss_pred hHHHHHHcCCC
Confidence 77888887776
|
| >3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0 | Back alignment and structure |
|---|
Probab=91.36 E-value=2.5 Score=35.46 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||+.||+..-. ..+..++-+.+++.|+++.. ++. +..... ..+..+ ...|.. ..
T Consensus 24 ~~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~l~~~gl~~~~-~~~--~~~~~~-~~~~~~--~~~~~~----r~ 89 (269)
T 3ngf_A 24 PFLERFRLAAEAGFGGVEFLFPY----DFDADVIARELKQHNLTQVL-FNM--PPGDWA-AGERGM--AAISGR----EQ 89 (269)
T ss_dssp CHHHHHHHHHHTTCSEEECSCCT----TSCHHHHHHHHHHTTCEEEE-EEC--CCSCTT-TTCCBC--TTCTTC----HH
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCcEEE-Eec--CCCccc-cCCCCc--CCCccH----HH
Confidence 78999999999999999998521 23456788888999999754 221 111110 000000 000110 11
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccH-------HHHHHH---HhccCCCceEEec------C-----Cc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAKV---IGRLGLEKTMFEA------T-----NP 191 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-------d~v~~i---~~~~~~~~lifEA------P-----~k 191 (240)
...+.+.+.++..-+.||..|.+-+ | . ..+.-+. +.+.++ ++..|+ +|.+|. | ..
T Consensus 90 ~~~~~~~~~i~~A~~lGa~~v~~~~-g-~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~n~~~~~~~~~~~~ 165 (269)
T 3ngf_A 90 EFRDNVDIALHYALALDCRTLHAMS-G-I-TEGLDRKACEETFIENFRYAADKLAPHGI-TVLVEPLNTRNMPGYFIVHQ 165 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECCB-C-B-CTTSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEECCCCTTTSTTBSCCCH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEcc-C-C-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEeeCCcccCccchhcCH
Confidence 1234455555556678999998854 3 2 2222111 222223 344455 588894 2 45
Q ss_pred hhHHHHHHHhCC-CcccccCCCCc
Q 026320 192 RTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 192 ~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
.+-..++++.|+ +|-+-+|...+
T Consensus 166 ~~~~~l~~~v~~~~vg~~~D~~h~ 189 (269)
T 3ngf_A 166 LEAVGLVKRVNRPNVAVQLDLYHA 189 (269)
T ss_dssp HHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred HHHHHHHHHhCCCCCCeEEEhhhH
Confidence 567889999984 44443554443
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=91.24 E-value=1.9 Score=38.74 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=70.3
Q ss_pred cEEEecCcc--ccccChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 026320 6 DGLKFSGGS--HSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 76 (240)
Q Consensus 6 D~lKfg~GT--s~l~p~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 76 (240)
+-+-|++|+ -...+.+.+.+.++.+++.|+.++ +|+ .-++.++.+++.|++.|-||=.+-
T Consensus 117 ~~i~~~gg~~~p~~~~~~~l~~ll~~ik~~g~~i~~t~G~-----------l~~e~l~~L~~aGvd~v~i~les~~e~~~ 185 (369)
T 1r30_A 117 TRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYG 185 (369)
T ss_dssp SEEEEEECCSSCCTTTHHHHHHHHHHHHHTTSEEEEECSS-----------CCHHHHHHHHHHCCCEEECCCBSCHHHHH
T ss_pred cEEEEEeCCCCCCcCCHHHHHHHHHHHHHcCCeEEEecCC-----------CCHHHHHHHHHCCCCEEeecCcCCHHHHH
Confidence 334455543 233445567777777777766543 232 235677788888999988775541
Q ss_pred ----cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC--C
Q 026320 77 ----EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG--A 150 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG--A 150 (240)
.-+.+++.+.|+.+++.|+.+. ++.-.+.. ++.+++.+.++.-.+.| .
T Consensus 186 ~i~~~~~~~~~l~~i~~a~~~Gi~v~--~~~I~Gl~------------------------et~ed~~~~l~~l~~l~~~~ 239 (369)
T 1r30_A 186 NIITTRTYQERLDTLEKVRDAGIKVC--SGGIVGLG------------------------ETVKDRAGLLLQLANLPTPP 239 (369)
T ss_dssp HHCCSSCHHHHHHHHHHHHHHHCEEE--CCEEECSS------------------------CCHHHHHHHHHHHHSSSSCC
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCeee--eeeEeeCC------------------------CCHHHHHHHHHHHHhhcCCC
Confidence 1456888999999999988654 34432211 13577777777766776 5
Q ss_pred cEEEE
Q 026320 151 DMIMI 155 (240)
Q Consensus 151 ~~Vii 155 (240)
+.|-+
T Consensus 240 ~~i~~ 244 (369)
T 1r30_A 240 ESVPI 244 (369)
T ss_dssp SEEEE
T ss_pred CEEEe
Confidence 56544
|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.39 Score=40.52 Aligned_cols=47 Identities=26% Similarity=0.221 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt----i~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+++.++.++++||++||+.... ..++.+...++-+.+++.|+++..
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 66 (286)
T 3dx5_A 16 SFTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEITM 66 (286)
T ss_dssp CHHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGGTCCEEE
T ss_pred CHHHHHHHHHHhCCCEEEEcccccccccccCHHHHHHHHHHHHHcCCeEEE
Confidence 46666667777777777764211 112345555666666666666543
|
| >2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=0.71 Score=39.76 Aligned_cols=146 Identities=16% Similarity=0.137 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt-i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
.+++ ++.++++||+.||+.... ...+..+..++.+.+++.|+++.. ..-........ ..|+. ..
T Consensus 38 ~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~-~~~~~~~~~l~-~~d~~------------~r 102 (309)
T 2hk0_A 38 FGPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTA-GIGPSKTKNLS-SEDAA------------VR 102 (309)
T ss_dssp SHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEE-ECCCCSSSCSS-CSCHH------------HH
T ss_pred cHHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEE-ecCCCCCCCCC-CCCHH------------HH
Confidence 7889 999999999999998542 233346777888999999999877 32100000111 11110 00
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec---cccccCCCCccHH-------HHHH---HHhccCCCceEEecC---------
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHADSLRAD-------IIAK---VIGRLGLEKTMFEAT--------- 189 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~g~~r~d-------~v~~---i~~~~~~~~lifEAP--------- 189 (240)
....+.+.+.++..-+.||..|++=. .|.+.....-+.+ .+.+ .++..|+ +|.+|.-
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lEn~~~~~~~~~~ 181 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGI-NLCIEVLNRFENHVLN 181 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCCTTTCSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCC-EEEEeecccccccccC
Confidence 11235555666666678999998542 1332111101121 2222 2333454 5888864
Q ss_pred CchhHHHHHHHhCC-CcccccCCCCc
Q 026320 190 NPRTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 190 ~k~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
...+-..++++.|+ +|-+-+|..+.
T Consensus 182 ~~~~~~~l~~~v~~~~vg~~~D~~H~ 207 (309)
T 2hk0_A 182 TAAEGVAFVKDVGKNNVKVMLDTFHM 207 (309)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEHHHH
T ss_pred CHHHHHHHHHHcCCCCeEEEEehhhH
Confidence 34567789999984 55543554443
|
| >2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=90.87 E-value=1.2 Score=38.83 Aligned_cols=87 Identities=14% Similarity=0.192 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEecCCcc-cCC----hhHHHHHHHHHHHcCCc---ccceeeeecCCCCCCCccccccccccccCCC
Q 026320 56 EYVEDCKQVGFDTIELNVGSL-EIP----EETLLRYVRLVKSAGLK---AKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti-~l~----~~~r~~lI~~~~~~G~~---v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+.++.++++||+.||++.... ..+ ..+..++-+.++++|++ +.+-.+... ...+. ..|+.
T Consensus 35 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~~~~~~~-~~~l~-~~d~~---------- 102 (335)
T 2qw5_A 35 AHIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKISTNVGATR-TFDPS-SNYPE---------- 102 (335)
T ss_dssp HHHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCS-SSCTT-CSSHH----------
T ss_pred HHHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEEEeccCC-CCCCC-CCCHH----------
Confidence 899999999999999986533 222 36677888889999999 655222210 00111 11110
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
......+.+.+.++..-+.||..|+..
T Consensus 103 --~r~~~~~~~~~~i~~A~~lG~~~v~~~ 129 (335)
T 2qw5_A 103 --QRQEALEYLKSRVDITAALGGEIMMGP 129 (335)
T ss_dssp --HHHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred --HHHHHHHHHHHHHHHHHHcCCCEEecc
Confidence 001123455555666667899999654
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=90.83 E-value=0.83 Score=40.93 Aligned_cols=98 Identities=14% Similarity=0.130 Sum_probs=67.3
Q ss_pred HHHHHHHcCCCEEEecCCcccC--------Ch----hHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 57 YVEDCKQVGFDTIELNVGSLEI--------PE----ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti~l--------~~----~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
=++.+.+.|.+.|-|...+-++ +. +.-.+.|+.+++.|++|-. .+.. .++...
T Consensus 86 ~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~--~i~~---~~~~~~---------- 150 (307)
T 1ydo_A 86 GLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRA--YLST---VFGCPY---------- 150 (307)
T ss_dssp HHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEE--EEEC---TTCBTT----------
T ss_pred hHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEE--EEEE---EecCCc----------
Confidence 4777888899999997644332 22 3346789999999998743 3321 111111
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
++..|++.+++.+++..++||+.|. |+|..|-..+..+.++++.+
T Consensus 151 -----~~~~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~l 195 (307)
T 1ydo_A 151 -----EKDVPIEQVIRLSEALFEFGISELS-----LGDTIGAANPAQVETVLEAL 195 (307)
T ss_dssp -----TBCCCHHHHHHHHHHHHHHTCSCEE-----EECSSCCCCHHHHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHHHhcCCCEEE-----EcCCCCCcCHHHHHHHHHHH
Confidence 1123689999999999999999664 56888888888887777543
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=90.74 E-value=0.81 Score=41.05 Aligned_cols=94 Identities=20% Similarity=0.283 Sum_probs=62.4
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 60 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 60 ~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
..+. |.++|-|-||. ...+.|+.+.++|.+|.-.+|.+.. ....++.+....+ .....+++|
T Consensus 115 l~ka-Ga~aVklEdg~------~~~~~i~~l~~~GIpv~gHlgltPq-------~~~~~gg~~vqgr----t~~~a~~~i 176 (275)
T 3vav_A 115 LMRA-GAQMVKFEGGE------WLAETVRFLVERAVPVCAHVGLTPQ-------SVHAFGGFKVQGK----TEAGAAQLL 176 (275)
T ss_dssp HHHT-TCSEEEEECCG------GGHHHHHHHHHTTCCEEEEEESCGG-------GHHHHC---CCCC----SHHHHHHHH
T ss_pred HHHc-CCCEEEECCch------hHHHHHHHHHHCCCCEEEecCCCce-------EEeccCCeEEEcC----CHHHHHHHH
Confidence 3344 99999999994 4477899999999999988887521 1111111111000 012358999
Q ss_pred HHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
++++..-+|||+.|.+|+= .++++.+|.+.++
T Consensus 177 ~rA~a~~eAGA~~ivlE~v---------p~~~a~~It~~l~ 208 (275)
T 3vav_A 177 RDARAVEEAGAQLIVLEAV---------PTLVAAEVTRELS 208 (275)
T ss_dssp HHHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCEEEecCC---------CHHHHHHHHHhCC
Confidence 9999999999999999973 2335555555554
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=90.72 E-value=1.9 Score=38.20 Aligned_cols=106 Identities=13% Similarity=0.262 Sum_probs=66.2
Q ss_pred HHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 026320 25 EVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 25 eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g 102 (240)
+.++-.|+. ++++..=|++...+..| +++|++.|++.|++.+=|. ++|.++..++++.++++|+.+++=+.
T Consensus 86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g---~~~f~~~~~~aGvdGvIip----Dlp~ee~~~~~~~~~~~gl~~I~lva 158 (271)
T 3nav_A 86 ELIAQIRARNPETPIGLLMYANLVYARG---IDDFYQRCQKAGVDSVLIA----DVPTNESQPFVAAAEKFGIQPIFIAP 158 (271)
T ss_dssp HHHHHHHHHCTTSCEEEEECHHHHHHTC---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHHh---HHHHHHHHHHCCCCEEEEC----CCCHHHHHHHHHHHHHcCCeEEEEEC
Confidence 345555554 34333226778877775 8999999999999999886 67778888999999999988655332
Q ss_pred eecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccH
Q 026320 103 VMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA 169 (240)
Q Consensus 103 ~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~ 169 (240)
. . ++.++++. -.+.+..+|-.-++ |++........
T Consensus 159 p---~--------------------------t~~eri~~---i~~~~~gfiY~vs~~GvTG~~~~~~~ 194 (271)
T 3nav_A 159 P---T--------------------------ASDETLRA---VAQLGKGYTYLLSRAGVTGAETKANM 194 (271)
T ss_dssp T---T--------------------------CCHHHHHH---HHHHCCSCEEECCCC--------CCH
T ss_pred C---C--------------------------CCHHHHHH---HHHHCCCeEEEEeccCCCCcccCCch
Confidence 1 0 12334444 44567777877776 66655444433
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.71 E-value=0.72 Score=41.49 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=66.7
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHH
Q 026320 57 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVD 136 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~ 136 (240)
-.+..++-|.++|-|-|| ++..+.|+.+.++|..|.-.+|..-. ....++.+....+ .+..+
T Consensus 118 a~rl~~eaGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPq-------sv~~~ggf~v~gr-----t~~a~ 179 (281)
T 1oy0_A 118 ATRFLKDGGAHAVKLEGG------ERVAEQIACLTAAGIPVMAHIGFTPQ-------SVNTLGGFRVQGR-----GDAAE 179 (281)
T ss_dssp HHHHHHTTCCSEEEEEBS------GGGHHHHHHHHHHTCCEEEEEECCC--------------------------CHHHH
T ss_pred HHHHHHHhCCeEEEECCc------HHHHHHHHHHHHCCCCEEeeecCCcc-------eecccCCeEEEeC-----cHHHH
Confidence 355668899999999999 36788999999999988888887421 1111111111000 01258
Q ss_pred HHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 137 LLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 137 ~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
++|+.++...+|||+.|.+|+- ..++.++|.+.+++
T Consensus 180 ~~i~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~i 215 (281)
T 1oy0_A 180 QTIADAIAVAEAGAFAVVMEMV---------PAELATQITGKLTI 215 (281)
T ss_dssp HHHHHHHHHHHHTCSEEEEESC---------CHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHcCCcEEEEecC---------CHHHHHHHHHhCCC
Confidence 9999999999999999999983 24566777776653
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.8 Score=38.24 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=60.6
Q ss_pred cChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 18 MPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
++++.+++--++++++|+.++. +.+.. ...+.+++.++.|+.+|.+.|-+..| .+.+.++.+.+++.|++
T Consensus 60 ~~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~~A~~lGa~~v~~~~~-----~~~~~~l~~~a~~~gv~ 130 (262)
T 3p6l_A 60 LDAQTQKEIKELAASKGIKIVGTGVYVA----EKSSDWEKMFKFAKAMDLEFITCEPA-----LSDWDLVEKLSKQYNIK 130 (262)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEECC----SSTTHHHHHHHHHHHTTCSEEEECCC-----GGGHHHHHHHHHHHTCE
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeccCC----ccHHHHHHHHHHHHHcCCCEEEecCC-----HHHHHHHHHHHHHhCCE
Confidence 4566689999999999998765 33322 23458999999999999999999865 46778999999999998
Q ss_pred ccceeee
Q 026320 97 AKPKFAV 103 (240)
Q Consensus 97 v~~E~g~ 103 (240)
+.-|-.-
T Consensus 131 l~~En~~ 137 (262)
T 3p6l_A 131 ISVHNHP 137 (262)
T ss_dssp EEEECCS
T ss_pred EEEEeCC
Confidence 7776653
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=2 Score=38.13 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 20 KPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 20 ~~~l~eKi~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
.+.+++.++.++++ +.++.-+.+..-.+ .+..++++++.+.+.|.+.|.++-|. | .++++.+++.|.++.
T Consensus 52 ~~~l~~~i~~i~~~~~~p~~v~l~v~~~~--~~~~~~~~~~~~~~~g~d~V~~~~g~---p----~~~~~~l~~~gi~vi 122 (328)
T 2gjl_A 52 PEALAAEIARCRELTDRPFGVNLTLLPTQ--KPVPYAEYRAAIIEAGIRVVETAGND---P----GEHIAEFRRHGVKVI 122 (328)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEEECCCS--SCCCHHHHHHHHHHTTCCEEEEEESC---C----HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccccc--cCccHHHHHHHHHhcCCCEEEEcCCC---c----HHHHHHHHHcCCCEE
Confidence 56677777777653 21111111110000 12368899999999999999998663 4 367788888887765
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc---cccCCCCccHHHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD---VCKHADSLRADIIAKV 175 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg---i~d~~g~~r~d~v~~i 175 (240)
. .+ . + .+.+++..++|||.|++++.+ -.........+.+.++
T Consensus 123 ~--~v---~--------------------------t----~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v 167 (328)
T 2gjl_A 123 H--KC---T--------------------------A----VRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAA 167 (328)
T ss_dssp E--EE---S--------------------------S----HHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHH
T ss_pred e--eC---C--------------------------C----HHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHH
Confidence 2 12 0 1 344566789999999998752 1111112345666766
Q ss_pred Hhcc
Q 026320 176 IGRL 179 (240)
Q Consensus 176 ~~~~ 179 (240)
.+.+
T Consensus 168 ~~~~ 171 (328)
T 2gjl_A 168 ANRL 171 (328)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6544
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=90.57 E-value=1.4 Score=42.03 Aligned_cols=139 Identities=12% Similarity=0.158 Sum_probs=91.8
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceec-----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~-----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+|.+-+-..++-+ +.+++-|+.++++|..+. ..+. ..+++.+-+..+.+.+.|.+.|=|.|-.--+.
T Consensus 114 vd~i~if~~~sd~---~ni~~~i~~ak~~G~~v~~~i~~~~~~-----~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~ 185 (464)
T 2nx9_A 114 MDVFRVFDAMNDV---RNMQQALQAVKKMGAHAQGTLCYTTSP-----VHNLQTWVDVAQQLAELGVDSIALKDMAGILT 185 (464)
T ss_dssp CCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEECCCCT-----TCCHHHHHHHHHHHHHTTCSEEEEEETTSCCC
T ss_pred cCEEEEEEecCHH---HHHHHHHHHHHHCCCEEEEEEEeeeCC-----CCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcC
Confidence 3444444333333 568888888888888652 2221 12334566667777788999999988887788
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+.+-.++|+.++++ +. ..+++.+ .. |...-+-.+...++|||+.| ++-
T Consensus 186 P~~v~~lv~~l~~~-~~--~~i~~H~-Hn-------------------------d~GlAvAN~laAv~AGa~~V--D~ti 234 (464)
T 2nx9_A 186 PYAAEELVSTLKKQ-VD--VELHLHC-HS-------------------------TAGLADMTLLKAIEAGVDRV--DTAI 234 (464)
T ss_dssp HHHHHHHHHHHHHH-CC--SCEEEEE-CC-------------------------TTSCHHHHHHHHHHTTCSEE--EEBC
T ss_pred HHHHHHHHHHHHHh-cC--CeEEEEE-CC-------------------------CCChHHHHHHHHHHhCCCEE--EEec
Confidence 88888888888874 22 2344433 11 22333677778899999955 654
Q ss_pred -ccccCCCCccHHHHHHHHhccCCC
Q 026320 159 -DVCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 159 -gi~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
|+=...||...+.+-..+...|.+
T Consensus 235 ~g~gertGN~~lE~lv~~L~~~g~~ 259 (464)
T 2nx9_A 235 SSMSGTYGHPATESLVATLQGTGYD 259 (464)
T ss_dssp GGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred cccCCCCcCHHHHHHHHHHHhcCCC
Confidence 887889999988877777766543
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.17 Score=42.94 Aligned_cols=151 Identities=12% Similarity=0.129 Sum_probs=85.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc-ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccc-----ccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS-LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDR-----AFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt-i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~-----~~~~~~~~~~ 126 (240)
.+++.++.++++||++||+.... ..++.++..++.+.+++.|+++..- +.-.+.... .|. .++. ..|.
T Consensus 22 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-~~~~~g~~~---~~~~~~~~~~~~-~~~~- 95 (290)
T 3tva_A 22 GLGVHLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVI-FGGFDGESY---ADIPTTARTVGL-VPLE- 95 (290)
T ss_dssp SSSBCHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEE-ECCCTTCCC---SSHHHHHHHSSS-CSTT-
T ss_pred CHHHHHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEE-eeccCCccc---ccccccccccCC-CCHH-
Confidence 67888999999999999999743 3577888889999999999987652 211000000 000 0000 0010
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC--CCcc--HHHHHHH---HhccCCCceEEecC--CchhHHHH
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA--DSLR--ADIIAKV---IGRLGLEKTMFEAT--NPRTSEWF 197 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~--g~~r--~d~v~~i---~~~~~~~~lifEAP--~k~qQ~~~ 197 (240)
......+.+.+.++..-+.||..|++-+- ..... ..++ .+.+.++ ++..|+ ++.+|.- .+.+-..+
T Consensus 96 ---~r~~~~~~~~~~i~~a~~lG~~~v~~~~G-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~l 170 (290)
T 3tva_A 96 ---TRASRVAEMKEISDFASWVGCPAIGLHIG-FVPESSSPDYSELVRVTQDLLTHAANHGQ-AVHLETGQESADHLLEF 170 (290)
T ss_dssp ---THHHHHHHHHHHHHHHHHHTCSEEEECCC-CCCCTTSHHHHHHHHHHHHHHHHHHTTTC-EEEEECCSSCHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCCEEEEcCC-CCcccchHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCCHHHHHHH
Confidence 01123455555666666789999998642 11111 0110 1122223 334444 5666763 45677789
Q ss_pred HHHhC-CCcccccCCCCc
Q 026320 198 IRRYG-PKVNLFVDHSQV 214 (240)
Q Consensus 198 I~~fG-~~VNLgI~~~dV 214 (240)
+++.| |+|-+-.|..+.
T Consensus 171 ~~~~~~~~~g~~~D~~h~ 188 (290)
T 3tva_A 171 IEDVNRPNLGINFDPANM 188 (290)
T ss_dssp HHHHCCTTEEEEECHHHH
T ss_pred HHhcCCCCEEEEeccHHH
Confidence 99998 555553554443
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=90.35 E-value=1 Score=39.65 Aligned_cols=104 Identities=8% Similarity=0.107 Sum_probs=72.7
Q ss_pred HHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 24 EEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 24 ~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+.-.++.++.- +++..=|++...++.| +++|++.|++.|.+.+=|-| ||.++..++.+.++++|+..++=+
T Consensus 76 ~~~~~~~~~~r~~~Pivlm~Y~N~i~~~G---~e~F~~~~~~aGvdG~IipD----LP~eE~~~~~~~~~~~Gl~~I~lv 148 (252)
T 3tha_A 76 HSVFELLARIKTKKALVFMVYYNLIFSYG---LEKFVKKAKSLGICALIVPE----LSFEESDDLIKECERYNIALITLV 148 (252)
T ss_dssp HHHHHHHHHCCCSSEEEEECCHHHHHHHC---HHHHHHHHHHTTEEEEECTT----CCGGGCHHHHHHHHHTTCEECEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeccCHHHHhh---HHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHcCCeEEEEe
Confidence 34444444432 3333337888888886 89999999999999999887 888899999999999999876644
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCC
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADS 166 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~ 166 (240)
... +++++++++ .+.+..+|-+-++ |++.....
T Consensus 149 aP~-----------------------------t~~eRi~~i---a~~a~gFiY~Vs~~GvTG~~~~ 182 (252)
T 3tha_A 149 SVT-----------------------------TPKERVKKL---VKHAKGFIYLLASIGITGTKSV 182 (252)
T ss_dssp ETT-----------------------------SCHHHHHHH---HTTCCSCEEEECCSCSSSCSHH
T ss_pred CCC-----------------------------CcHHHHHHH---HHhCCCeEEEEecCCCCCcccC
Confidence 331 134444444 4556677777776 77655433
|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.41 Score=40.04 Aligned_cols=142 Identities=18% Similarity=0.243 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~--l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
.+++.++.++++||+.||+...... ++..+..++-+.+++.|+++.. ++.-. ... ..++.+
T Consensus 17 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~---~~~-~~~~~~------------ 79 (281)
T 3u0h_A 17 SLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLAN-LGLPL---NLY-DSEPVF------------ 79 (281)
T ss_dssp CHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECC-EECCS---CTT-SCHHHH------------
T ss_pred CHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEE-ecccc---ccc-CCCHHH------------
Confidence 6889999999999999999865431 2345567788888999998754 33211 111 111100
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc-ccccCCCCccH---HHHHHHH---hccCCCceEEecC--------------
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSD-DVCKHADSLRA---DIIAKVI---GRLGLEKTMFEAT-------------- 189 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~d~~g~~r~---d~v~~i~---~~~~~~~lifEAP-------------- 189 (240)
....+.+.+.++..-+.||..|.+-.- +-.+....... +.+.++. +..|+ +|.+|.-
T Consensus 80 -~~~~~~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv-~l~lE~~~~~~~~~~~~~~~~ 157 (281)
T 3u0h_A 80 -LRELSLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGM-RVGLEYVGPHHLRHRRYPFVQ 157 (281)
T ss_dssp -HHHHHTHHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEEECCCCGGGCCSSEECCC
T ss_pred -HHHHHHHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCC-EEEEEeccccccccccccccC
Confidence 112344455556666789999985321 10000000111 2222222 44454 4777842
Q ss_pred CchhHHHHHHHhCC-CcccccCCCC
Q 026320 190 NPRTSEWFIRRYGP-KVNLFVDHSQ 213 (240)
Q Consensus 190 ~k~qQ~~~I~~fG~-~VNLgI~~~d 213 (240)
...+-..++++.|+ +|-+-+|+.+
T Consensus 158 ~~~~~~~l~~~v~~~~vg~~~D~~h 182 (281)
T 3u0h_A 158 SLADLKTFWEAIGAPNVGALVDSYH 182 (281)
T ss_dssp SHHHHHHHHHHHCCTTEEEEEEHHH
T ss_pred CHHHHHHHHHHcCCCCeeEEeehhH
Confidence 45567789999985 5554344443
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=90.26 E-value=5.8 Score=35.25 Aligned_cols=130 Identities=20% Similarity=0.209 Sum_probs=94.5
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 54 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 54 ~~~y-l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
+|+| +.+++.+|=|+|=+--. -++.++..++++.+++.||.|+.|+.-
T Consensus 114 id~yQI~eAr~~GADaILLI~a--~L~~~~l~~l~~~A~~lGl~~LvEVh~----------------------------- 162 (258)
T 4a29_A 114 VKESQIDDAYNLGADTVLLIVK--ILTERELESLLEYARSYGMEPLILIND----------------------------- 162 (258)
T ss_dssp CSHHHHHHHHHHTCSEEEEEGG--GSCHHHHHHHHHHHHHTTCCCEEEESS-----------------------------
T ss_pred ccHHHHHHHHHcCCCeeehHHh--hcCHHHHHHHHHHHHHHhHHHHHhcch-----------------------------
Confidence 4555 67899999999976443 467888899999999999999999864
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCCccc-c-
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPKVNL-F- 208 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP-~k~qQ~~~I~~fG~~VNL-g- 208 (240)
-+++++.+++||+.|-|=.|.+- .-++.-+...+++..+|.+.+ |-|.= ....+...++..|.+-=| |
T Consensus 163 ------~~El~rAl~~~a~iIGINNRnL~--tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~l~~~G~~a~LVGe 234 (258)
T 4a29_A 163 ------ENDLDIALRIGARFIGIMSRDFE--TGEINKENQRKLISMIPSNVVKVAKLGISERNEIEELRKLGVNAFLISS 234 (258)
T ss_dssp ------HHHHHHHHHTTCSEEEECSBCTT--TCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHHHHHTTCCEEEECH
T ss_pred ------HHHHHHHhcCCCcEEEEeCCCcc--ccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHHHHHCCCCEEEECH
Confidence 35567788999999988777552 235566778889899987765 55665 445678889999988666 4
Q ss_pred --cCCCCchhhhhhhCcc
Q 026320 209 --VDHSQVMDLECLRGRN 224 (240)
Q Consensus 209 --I~~~dVl~LE~LR~~~ 224 (240)
+...| ++..|..|.
T Consensus 235 almr~~d--~~~~Li~G~ 250 (258)
T 4a29_A 235 SLMRNPE--KIKELIEGS 250 (258)
T ss_dssp HHHHCTT--HHHHHHC--
T ss_pred HHhCCCc--HHHHHHcCc
Confidence 33333 345555443
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=1.8 Score=44.45 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=39.7
Q ss_pred cCccccccChhHHHHHHHHHHhC-CceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 75 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 75 (240)
++|.+....++.+.+.++-++++ ++++.- .+ .+...+.++.+.+.+.|.++|-+||.+
T Consensus 679 ~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-------~~~~~~~~~a~~~~~~G~d~i~v~Nt~ 738 (1025)
T 1gte_A 679 GMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-------PNVTDIVSIARAAKEGGADGVTATNTV 738 (1025)
T ss_dssp ---SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-------SCSSCHHHHHHHHHHHTCSEEEECCCE
T ss_pred CcccccccCHHHHHHHHHHHHHhhCCceEEEeC-------CChHHHHHHHHHHHHcCCCEEEEeccc
Confidence 45666667888899999999987 655442 11 011246677788899999999998754
|
| >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=90.19 E-value=3.4 Score=36.05 Aligned_cols=171 Identities=19% Similarity=0.158 Sum_probs=89.5
Q ss_pred EEEecCccccccChhHHHHHHHHHHhCCceecC--CcHHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCC-hhH
Q 026320 7 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIP-EET 82 (240)
Q Consensus 7 ~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~--Gtl~E~a~~qg~~~~~~yl~~~k~l-GF~~IEISdGti~l~-~~~ 82 (240)
.-|||.|++.+-++ +..++ |.| .+..+++.++.++++ ||++||+. +.-+ .++
T Consensus 7 ~~~~~~~~w~~~~~--------------~~~f~~~g~~-------~~~~~~e~l~~aa~~~G~~~VEl~---~~~~~~~~ 62 (333)
T 3ktc_A 7 YPEFGAGLWHFANY--------------IDRYAVDGYG-------PALSTIDQINAAKEVGELSYVDLP---YPFTPGVT 62 (333)
T ss_dssp CCCEEEEGGGGSCC--------------CCSSSTTCSS-------CCCCHHHHHHHHHHHSSEEEEEEE---ESCSTTCC
T ss_pred CCcceeeeeeeecc--------------cccccCCCCC-------CCCCHHHHHHHHHHhCCCCEEEec---CCCcchhH
Confidence 35888888887651 12322 322 134799999999999 99999996 1111 356
Q ss_pred HHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-ccc
Q 026320 83 LLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-DVC 161 (240)
Q Consensus 83 r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-gi~ 161 (240)
..++-+.+++.|+++.. ++........ .+ |...+|.+ .......+.+.+.++..-+.||..|.+-+- .-+
T Consensus 63 ~~~l~~~l~~~Gl~i~~-~~~~~~~~~~---~~---g~l~~~d~--~~r~~~i~~~~~~i~~A~~LGa~~vv~~~g~~g~ 133 (333)
T 3ktc_A 63 LSEVKDALKDAGLKAIG-ITPEIYLQKW---SR---GAFTNPDP--AARAAAFELMHESAGIVRELGANYVKVWPGQDGW 133 (333)
T ss_dssp HHHHHHHHHHHTCEEEE-EEECTTSGGG---TT---CSTTCSSH--HHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEE
T ss_pred HHHHHHHHHHcCCeEEE-EecCcCcccc---cC---CCCCCcCH--HHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCc
Confidence 67788889999998753 2221000000 00 00000000 000112334444455555679999988542 112
Q ss_pred c--CCCCc---c---HHHHHHHHhccCCCceEEec-----------CCchhHHHHHHHhCCC-cccccC
Q 026320 162 K--HADSL---R---ADIIAKVIGRLGLEKTMFEA-----------TNPRTSEWFIRRYGPK-VNLFVD 210 (240)
Q Consensus 162 d--~~g~~---r---~d~v~~i~~~~~~~~lifEA-----------P~k~qQ~~~I~~fG~~-VNLgI~ 210 (240)
+ ..... + .+.+.++.+...--++.+|- +...+-..+++.+|+. |-+.+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~lE~~p~~~~~~~~~~~~~~~~~ll~~v~~~~vgl~lD 202 (333)
T 3ktc_A 134 DYPFQVSHKNLWKLAVDGMRDLAGANPDVKFAIEYKPREPRVKMTWDSAARTLLGIEDIGLDNVGVLLD 202 (333)
T ss_dssp SSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEEECCSCSSSSEESSCSHHHHHHHHHHHTCTTEEEEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCCCCccccCCCHHHHHHHHHHcCCcceEEEEe
Confidence 2 11111 1 12344455444445688882 2333455689999954 443243
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=90.17 E-value=1.7 Score=38.30 Aligned_cols=70 Identities=16% Similarity=0.357 Sum_probs=52.0
Q ss_pred HHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 25 EVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 25 eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
+.++-.|+. ++++..=|+..-.+..| +++|++.|++.|++.+=|. ++|.++..++++.++++|+.+.+=+
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g---~e~f~~~~~~aGvdgvii~----Dlp~ee~~~~~~~~~~~gl~~i~li 155 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANG---IDEFYTKAQAAGVDSVLIA----DVPVEESAPFSKAAKAHGIAPIFIA 155 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHC---HHHHHHHHHHHTCCEEEET----TSCGGGCHHHHHHHHHTTCEEECEE
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhh---HHHHHHHHHHcCCCEEEeC----CCCHhhHHHHHHHHHHcCCeEEEEE
Confidence 344445554 34333226777777775 8999999999999999996 5777888899999999998865533
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=90.11 E-value=1.3 Score=39.78 Aligned_cols=91 Identities=18% Similarity=0.275 Sum_probs=62.9
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHH
Q 026320 64 VGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAE 143 (240)
Q Consensus 64 lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 143 (240)
-|.++|-|-|| ++..+.|+.+.++|..|.-.+|..-.. ...++.+.... .. +..++++++++
T Consensus 107 aGa~aVklEdg------~e~~~~I~al~~agIpV~gHiGLtPQs-------~~~~ggf~v~g----rt-~~a~~~i~rA~ 168 (275)
T 1o66_A 107 AGAHMVKLEGG------VWMAETTEFLQMRGIPVCAHIGLTPQS-------VFAFGGYKVQG----RG-GKAQALLNDAK 168 (275)
T ss_dssp TTCSEEEEECS------GGGHHHHHHHHHTTCCEEEEEESCGGG-------TTC----------------CHHHHHHHHH
T ss_pred cCCcEEEECCc------HHHHHHHHHHHHcCCCeEeeeccCcee-------ecccCCeEEEe----Ch-HHHHHHHHHHH
Confidence 89999999999 367889999999999998888874211 11111111100 00 23689999999
Q ss_pred HHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 144 RCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 144 ~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
...+|||+.|.+|+- ..++.++|.+.+++
T Consensus 169 a~~eAGA~~ivlE~v---------p~~~a~~it~~l~i 197 (275)
T 1o66_A 169 AHDDAGAAVVLMECV---------LAELAKKVTETVSC 197 (275)
T ss_dssp HHHHTTCSEEEEESC---------CHHHHHHHHHHCSS
T ss_pred HHHHcCCcEEEEecC---------CHHHHHHHHHhCCC
Confidence 999999999999983 24566677776663
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.98 E-value=1.3 Score=38.03 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cccc---CChhHHHHHHHHHHHcCC
Q 026320 20 KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLE---IPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~---l~~~~r~~lI~~~~~~G~ 95 (240)
++.+++-++.+|++|+.+.... ... +..+.+.++|+|+|=++. |..+ ....+ .++++++++.+.
T Consensus 115 p~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~-~~~i~~l~~~~i 182 (232)
T 3igs_A 115 PVAVEALLARIHHHHLLTMADC----------SSV-DDGLACQRLGADIIGTTMSGYTTPDTPEEPD-LPLVKALHDAGC 182 (232)
T ss_dssp SSCHHHHHHHHHHTTCEEEEEC----------CSH-HHHHHHHHTTCSEEECTTTTSSSSSCCSSCC-HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCEEEEeC----------CCH-HHHHHHHhCCCCEEEEcCccCCCCCCCCCCC-HHHHHHHHhcCC
Confidence 3556666777777666555431 012 334556778899885432 2211 11112 366777766566
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
.|+.+-|+. + .+.+++.+++||+-|+| +..+++
T Consensus 183 pvIA~GGI~-----------------------------t----~~d~~~~~~~GadgV~V-Gsal~~ 215 (232)
T 3igs_A 183 RVIAEGRYN-----------------------------S----PALAAEAIRYGAWAVTV-GSAITR 215 (232)
T ss_dssp CEEEESCCC-----------------------------S----HHHHHHHHHTTCSEEEE-CHHHHC
T ss_pred cEEEECCCC-----------------------------C----HHHHHHHHHcCCCEEEE-ehHhcC
Confidence 666666662 1 35566678999999999 565664
|
| >3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=89.91 E-value=1.1 Score=38.91 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-cCChhHHHHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+++.++.++++||++||+....- .....+..++-+.+++.|+++.+
T Consensus 30 ~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~ 77 (303)
T 3l23_A 30 DVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIIS 77 (303)
T ss_dssp CHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEE
Confidence 699999999999999999985211 02223456777888999999854
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=1.7 Score=38.09 Aligned_cols=49 Identities=10% Similarity=-0.006 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 026320 19 PKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 75 (240)
Q Consensus 19 p~~~l~eKi~l~~~~-gV~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGt 75 (240)
+.+.+.+.++-.++. ++++. ++ | ....+.++.+.+.+.|.+.|-+++.+
T Consensus 142 ~~e~~~~iv~~vr~~~~~Pv~vKi~~~-~-------~~~~~~~~a~~~~~~G~d~i~v~~~~ 195 (311)
T 1jub_A 142 DFEATEKLLKEVFTFFTKPLGVKLPPY-F-------DLVHFDIMAEILNQFPLTYVNSVNSI 195 (311)
T ss_dssp CHHHHHHHHHHHTTTCCSCEEEEECCC-C-------SHHHHHHHHHHHTTSCCCEEEECCCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCC-C-------CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 667788888888876 55443 33 2 11256777888999999999999986
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=89.71 E-value=1.5 Score=40.46 Aligned_cols=124 Identities=15% Similarity=0.131 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc--cc
Q 026320 22 FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA--KP 99 (240)
Q Consensus 22 ~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v--~~ 99 (240)
.+++-++.++++|..+..+ .|.+...+++.+-+..+.+.+.|.+.|-+.|-.--+.+.+-.++|+.++++ +.. ..
T Consensus 129 ~~~~~v~~a~~~g~~v~~~--~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~-~~~~~~~ 205 (370)
T 3rmj_A 129 AAVKAVKIAREYTDDVEFS--CEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAK-TPNGGKV 205 (370)
T ss_dssp HHHHHHHHHTTTCSCEEEE--EETGGGSCHHHHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHH-STTGGGS
T ss_pred HHHHHHHHHHHcCCEEEEe--cCCCCccCHHHHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHh-CCCcCce
Confidence 3455788999999876544 223334555577788888999999999999999989999989999999884 111 12
Q ss_pred eeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 100 KFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 100 E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
.+++.+. . |....+-.....++|||+.| ++- |+=+..||...+.+-..+
T Consensus 206 ~l~~H~H-n-------------------------d~GlAvAN~laAv~aGa~~v--d~tv~GlGeraGN~~lE~vv~~L 256 (370)
T 3rmj_A 206 VWSAHCH-N-------------------------DLGLAVANSLAALKGGARQV--ECTVNGLGERAGNASVEEIVMAL 256 (370)
T ss_dssp EEEEECB-C-------------------------TTSCHHHHHHHHHHTTCCEE--EEBGGGCSSTTCBCBHHHHHHHH
T ss_pred EEEEEeC-C-------------------------CCChHHHHHHHHHHhCCCEE--EEeccccCcccccccHHHHHHHH
Confidence 3555431 1 22334677788899999965 664 888899999987665444
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=89.56 E-value=2.7 Score=37.00 Aligned_cols=141 Identities=11% Similarity=0.090 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g--------------- 78 (291)
T 3tak_A 23 SLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPII--AGT-------G--------------- 78 (291)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEE--EeC-------C---------------
Confidence 678889999999999996544333 78999999999999883 1 1111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~~ 177 (240)
..+..+.++.+++.-++|||-|++=.- -+|+. .-++..+.+.+++
T Consensus 79 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La- 152 (291)
T 3tak_A 79 -----ANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVRLA- 152 (291)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHT-
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHHHH-
Confidence 114688899999999999999998762 13653 2367778888886
Q ss_pred ccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~li--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+.| +++ =|+ ++..+...++++.+++..+.- -+|-+.+++|..|--|
T Consensus 153 ~~p--nivgiK~ssgd~~~~~~~~~~~~~~f~v~~-G~d~~~~~~l~~G~~G 201 (291)
T 3tak_A 153 EIP--NIVGIKDATGDVPRGKALIDALNGKMAVYS-GDDETAWELMLLGADG 201 (291)
T ss_dssp TST--TEEEEEECSCCHHHHHHHHHHHTTSSEEEE-CCHHHHHHHHHTTCCE
T ss_pred cCC--CEEEEEeCCCCHHHHHHHHHHcCCCeEEEE-CcHHHHHHHHHCCCCE
Confidence 443 332 244 566777788888888877743 3355678888876544
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=89.45 E-value=1.6 Score=39.46 Aligned_cols=92 Identities=11% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
..++++.|.+.|.+.|-|.+-.-++ +.-.+.|+.+++.|+.| ++...+.. ..
T Consensus 95 ~~~~i~~a~~aGvd~v~I~~~~s~~--~~~~~~i~~ak~~G~~v--~~~~~~a~------------------------~~ 146 (345)
T 1nvm_A 95 SVHDLKNAYQAGARVVRVATHCTEA--DVSKQHIEYARNLGMDT--VGFLMMSH------------------------MI 146 (345)
T ss_dssp CHHHHHHHHHHTCCEEEEEEETTCG--GGGHHHHHHHHHHTCEE--EEEEESTT------------------------SS
T ss_pred cHHHHHHHHhCCcCEEEEEEeccHH--HHHHHHHHHHHHCCCEE--EEEEEeCC------------------------CC
Confidence 4678999999999999997422111 45568999999999875 44553210 11
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
+++.+.+.++...++||+.|- ++|..|-..+..+.++++.
T Consensus 147 ~~e~~~~ia~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~ 186 (345)
T 1nvm_A 147 PAEKLAEQGKLMESYGATCIY-----MADSGGAMSMNDIRDRMRA 186 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEE-----EECTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEE-----ECCCcCccCHHHHHHHHHH
Confidence 578999999999999999764 5677777777777776653
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=89.41 E-value=2.1 Score=38.30 Aligned_cols=160 Identities=13% Similarity=0.021 Sum_probs=100.4
Q ss_pred CCceecCCcHHHH-HHHhCCchHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-Ccccceeeeec
Q 026320 33 HDVYVSTGDWAEH-LIRNGPSAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMF 105 (240)
Q Consensus 33 ~gV~v~~Gtl~E~-a~~qg~~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~ 105 (240)
.||.+..=|.|-- --.=+-+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 13 ~Gv~~a~vTPf~~~dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpVi--aGv-- 88 (316)
T 3e96_A 13 ETISGIPITPFRKSDGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVV--AGI-- 88 (316)
T ss_dssp SSEEECCCCCBCTTTCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEE--
T ss_pred CceEEeeeCCccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEE--EEe--
Confidence 5665555554411 000112368889999999999999776543 489999999999999884 1 1111 122
Q ss_pred CCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------cc
Q 026320 106 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DV 160 (240)
Q Consensus 106 ~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi 160 (240)
+. +..+.|+.+++.-++||+.|++=.- -+
T Consensus 89 -------------------------g~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiil 142 (316)
T 3e96_A 89 -------------------------GY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLV 142 (316)
T ss_dssp -------------------------CS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEE
T ss_pred -------------------------Cc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 01 3678899999999999999998531 14
Q ss_pred ccCCCCccHHHHHHHHhccC-CCceEEecCCchhHHHHHHHhCC-Ccc-cccCCCCchhhhhhhCc
Q 026320 161 CKHADSLRADIIAKVIGRLG-LEKTMFEATNPRTSEWFIRRYGP-KVN-LFVDHSQVMDLECLRGR 223 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~~~~-~~~lifEAP~k~qQ~~~I~~fG~-~VN-LgI~~~dVl~LE~LR~~ 223 (240)
|+..-++..+.+.++. +.| +-=+=...++-.+...+++..++ +.. +.--.++.+.+..|..|
T Consensus 143 Yn~g~~l~~~~~~~La-~~pnIvgiKdssgd~~~~~~~~~~~~~~~f~~v~~G~d~~~~~~~l~~G 207 (316)
T 3e96_A 143 YFKDPEISDRVLVDLA-PLQNLVGVKYAINDLPRFAKVVRSIPEEHQIAWICGTAEKWAPFFWHAG 207 (316)
T ss_dssp EECCTTSCTHHHHHHT-TCTTEEEEEECCCCHHHHHHHHTTSCGGGCCEEEETTCTTTHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHH-cCCCEEEEEeCCCCHHHHHHHHHhcCCCCceEEEeCChHHHHHHHHHCC
Confidence 7653467777777776 343 11112233456666777777776 555 44344455555666644
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=89.39 E-value=1.9 Score=38.10 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCC-cccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGL-KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~-~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-= ++.-=.|+ |
T Consensus 25 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv-------g----------------- 80 (294)
T 3b4u_A 25 AMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGV-------L----------------- 80 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEE-------C-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC-------C-----------------
Confidence 67888999999999999886543 47999999999999988411 11111233 0
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..+..+.|+++++.-++|||.|++=.-
T Consensus 81 ---~~~t~~ai~la~~A~~~Gadavlv~~P 107 (294)
T 3b4u_A 81 ---VDSIEDAADQSAEALNAGARNILLAPP 107 (294)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred ---CccHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 114688899999999999999998553
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=89.37 E-value=2.4 Score=37.90 Aligned_cols=113 Identities=18% Similarity=0.203 Sum_probs=71.4
Q ss_pred cChhHHHHHHHHHHhCC-ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc
Q 026320 18 MPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~g-V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~ 96 (240)
++.+.+++.++.+++.- .++--+.+. .+. .++++++.+.+.|.+.|.++-|. | .++++.+++.|.+
T Consensus 60 ~~~~~l~~~i~~i~~~~~~p~gVnl~~----~~~--~~~~~~~~~~~~g~d~V~l~~g~---p----~~~~~~l~~~g~~ 126 (326)
T 3bo9_A 60 MKPDDLRKAISELRQKTDKPFGVNIIL----VSP--WADDLVKVCIEEKVPVVTFGAGN---P----TKYIRELKENGTK 126 (326)
T ss_dssp CCHHHHHHHHHHHHTTCSSCEEEEEET----TST--THHHHHHHHHHTTCSEEEEESSC---C----HHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEec----cCC--CHHHHHHHHHHCCCCEEEECCCC---c----HHHHHHHHHcCCc
Confidence 46677888888888752 222112111 122 67899999999999999998773 4 3567888887777
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHH
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAK 174 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~ 174 (240)
+.+. + . + .+.+++..++|||.|+++++ |-... .....+++.+
T Consensus 127 v~~~--v---~--------------------------s----~~~a~~a~~~GaD~i~v~g~~~GG~~G-~~~~~~ll~~ 170 (326)
T 3bo9_A 127 VIPV--V---A--------------------------S----DSLARMVERAGADAVIAEGMESGGHIG-EVTTFVLVNK 170 (326)
T ss_dssp EEEE--E---S--------------------------S----HHHHHHHHHTTCSCEEEECTTSSEECC-SSCHHHHHHH
T ss_pred EEEE--c---C--------------------------C----HHHHHHHHHcCCCEEEEECCCCCccCC-CccHHHHHHH
Confidence 6541 1 0 1 34566677899999999985 21111 1233456666
Q ss_pred HHhcc
Q 026320 175 VIGRL 179 (240)
Q Consensus 175 i~~~~ 179 (240)
+.+.+
T Consensus 171 i~~~~ 175 (326)
T 3bo9_A 171 VSRSV 175 (326)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 65544
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=89.23 E-value=3.5 Score=37.88 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=44.8
Q ss_pred CcccEEEecCcc------ccccChhHHHHHHHHHHh--------CCce----ecCC-cHHHHHHHhCCchHHHHHHHHHH
Q 026320 3 QFVDGLKFSGGS------HSLMPKPFIEEVVKRAHQ--------HDVY----VSTG-DWAEHLIRNGPSAFKEYVEDCKQ 63 (240)
Q Consensus 3 ~yID~lKfg~GT------s~l~p~~~l~eKi~l~~~--------~gV~----v~~G-tl~E~a~~qg~~~~~~yl~~~k~ 63 (240)
+|.|++=+=.|| ..+..++.+.+.++..++ .+++ +.|+ +. +.+.++.+.|.+
T Consensus 175 ~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~---------~~~~~ia~~~~~ 245 (367)
T 3zwt_A 175 PLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTS---------QDKEDIASVVKE 245 (367)
T ss_dssp GGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCH---------HHHHHHHHHHHH
T ss_pred hhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCH---------HHHHHHHHHHHH
Confidence 445555554443 345667778888877654 3443 4454 22 157788889999
Q ss_pred cCCCEEEecCCcccC
Q 026320 64 VGFDTIELNVGSLEI 78 (240)
Q Consensus 64 lGF~~IEISdGti~l 78 (240)
.|.|.|-+++.|...
T Consensus 246 aGadgi~v~ntt~~r 260 (367)
T 3zwt_A 246 LGIDGLIVTNTTVSR 260 (367)
T ss_dssp HTCCEEEECCCBSCC
T ss_pred cCCCEEEEeCCCccc
Confidence 999999999998654
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=89.22 E-value=0.83 Score=40.72 Aligned_cols=95 Identities=17% Similarity=0.283 Sum_probs=65.1
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHH
Q 026320 60 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLI 139 (240)
Q Consensus 60 ~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i 139 (240)
..+ -|.++|-|-|| ++..+.|+.+.++|..|.-.+|..-. ....++.+....+ .....++++
T Consensus 103 l~k-aGa~aVklEgg------~e~~~~I~al~~agipV~gHiGLtPq-------~v~~~ggf~v~gr----t~~~a~~~i 164 (264)
T 1m3u_A 103 VMR-AGANMVKIEGG------EWLVETVQMLTERAVPVCGHLGLTPQ-------SVNIFGGYKVQGR----GDEAGDQLL 164 (264)
T ss_dssp HHH-TTCSEEECCCS------GGGHHHHHHHHHTTCCEEEEEESCGG-------GHHHHTSSCCCCC----SHHHHHHHH
T ss_pred HHH-cCCCEEEECCc------HHHHHHHHHHHHCCCCeEeeecCCce-------eecccCCeEEEeC----CHHHHHHHH
Confidence 344 89999999999 36788999999999988888887421 1111111111000 011258999
Q ss_pred HHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCC
Q 026320 140 RRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 140 ~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
+.++...+|||+.|.+|+- ..++.++|.+.++.
T Consensus 165 ~rA~a~~eAGA~~ivlE~v---------p~~~a~~it~~l~i 197 (264)
T 1m3u_A 165 SDALALEAAGAQLLVLECV---------PVELAKRITEALAI 197 (264)
T ss_dssp HHHHHHHHHTCCEEEEESC---------CHHHHHHHHHHCSS
T ss_pred HHHHHHHHCCCcEEEEecC---------CHHHHHHHHHhCCC
Confidence 9999999999999999983 24566677776653
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=89.20 E-value=2.1 Score=37.66 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 20 ~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gvi--~Gv-------g--~--------------- 73 (286)
T 2r91_A 20 LFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARRVI--VQV-------A--S--------------- 73 (286)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSSEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCEE--Eee-------C--C---------------
Confidence 67888999999999999876543 47999999999999988411111 222 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.+..+.|+.+++.-++|||.|++=.-
T Consensus 74 ---~~t~~ai~la~~A~~~Gadavlv~~P 99 (286)
T 2r91_A 74 ---LNADEAIALAKYAESRGAEAVASLPP 99 (286)
T ss_dssp ---SSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 14688899999999999999998543
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=89.18 E-value=3.1 Score=33.98 Aligned_cols=130 Identities=17% Similarity=0.064 Sum_probs=75.6
Q ss_pred CcccEEEecCccccccChhHHHHHHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 026320 3 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 80 (240)
Q Consensus 3 ~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~ 80 (240)
+++|++|.|+=.+.-... +-|+..|++ +++++-..-+ .. -.+.+++.|.+.|.+.|=+.+-. +.
T Consensus 24 ~~~diie~G~p~~~~~g~----~~i~~ir~~~~~~~i~~~~~~-----~~--~~~~~~~~~~~~Gad~v~v~~~~---~~ 89 (211)
T 3f4w_A 24 DDVDIIEVGTPFLIREGV----NAIKAIKEKYPHKEVLADAKI-----MD--GGHFESQLLFDAGADYVTVLGVT---DV 89 (211)
T ss_dssp GGCSEEEECHHHHHHHTT----HHHHHHHHHCTTSEEEEEEEE-----CS--CHHHHHHHHHHTTCSEEEEETTS---CH
T ss_pred cCccEEEeCcHHHHhccH----HHHHHHHHhCCCCEEEEEEEe-----cc--chHHHHHHHHhcCCCEEEEeCCC---Ch
Confidence 589999999621111122 234444443 5666433211 11 23445899999999999996543 34
Q ss_pred hHHHHHHHHHHHcCCccccee-eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 81 ETLLRYVRLVKSAGLKAKPKF-AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 81 ~~r~~lI~~~~~~G~~v~~E~-g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
+...++++.+++.|+++..++ +. | ++ .++++..+++|+++|.+. .|
T Consensus 90 ~~~~~~~~~~~~~g~~~~v~~~~~-----------------------~------t~---~~~~~~~~~~g~d~i~v~-~g 136 (211)
T 3f4w_A 90 LTIQSCIRAAKEAGKQVVVDMICV-----------------------D------DL---PARVRLLEEAGADMLAVH-TG 136 (211)
T ss_dssp HHHHHHHHHHHHHTCEEEEECTTC-----------------------S------SH---HHHHHHHHHHTCCEEEEE-CC
T ss_pred hHHHHHHHHHHHcCCeEEEEecCC-----------------------C------CH---HHHHHHHHHcCCCEEEEc-CC
Confidence 555789999999888765431 11 0 12 566777789999999886 32
Q ss_pred cccC-CCCccHHHHHHHHhcc
Q 026320 160 VCKH-ADSLRADIIAKVIGRL 179 (240)
Q Consensus 160 i~d~-~g~~r~d~v~~i~~~~ 179 (240)
.... .+....+.+.++.+.+
T Consensus 137 ~~g~~~~~~~~~~i~~l~~~~ 157 (211)
T 3f4w_A 137 TDQQAAGRKPIDDLITMLKVR 157 (211)
T ss_dssp HHHHHTTCCSHHHHHHHHHHC
T ss_pred CcccccCCCCHHHHHHHHHHc
Confidence 2100 1111345666665544
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=88.93 E-value=1.3 Score=40.25 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=51.1
Q ss_pred cCccccccChhHHHHHHHHHHh-CCceec----CCcHHHHHHHhCC-chHHHHHHHHHHcCCCEEEecCCcccC--Chh-
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQ-HDVYVS----TGDWAEHLIRNGP-SAFKEYVEDCKQVGFDTIELNVGSLEI--PEE- 81 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~-~gV~v~----~Gtl~E~a~~qg~-~~~~~yl~~~k~lGF~~IEISdGti~l--~~~- 81 (240)
++|++.+-..+.+.+.++-.++ .+++|. +| |-+. .+ ....++.+.+.+.|.++|-|+.++-.. +..
T Consensus 102 ~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g-~~~~----~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~ 176 (350)
T 3b0p_A 102 GYGACLLLDLARVREILKAMGEAVRVPVTVKMRLG-LEGK----ETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKA 176 (350)
T ss_dssp TCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESC-BTTC----CCHHHHHHHHHHHHHTTCCEEEEECSCBC-------
T ss_pred CcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecC-cCcc----ccHHHHHHHHHHHHHcCCCEEEEecCchhcccCccc
Confidence 4678888888999999998887 366443 34 2211 10 135677888999999999999976421 110
Q ss_pred ------HHHHHHHHHHHc
Q 026320 82 ------TLLRYVRLVKSA 93 (240)
Q Consensus 82 ------~r~~lI~~~~~~ 93 (240)
...++|+.+++.
T Consensus 177 ~~~~~~~~~~~i~~ik~~ 194 (350)
T 3b0p_A 177 NREIPPLRHDWVHRLKGD 194 (350)
T ss_dssp ---CCCCCHHHHHHHHHH
T ss_pred ccCCCcccHHHHHHHHHh
Confidence 124677777763
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=7.7 Score=35.17 Aligned_cols=169 Identities=12% Similarity=0.111 Sum_probs=100.4
Q ss_pred cChhHHHHHHHHHHh--CCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHH
Q 026320 18 MPKPFIEEVVKRAHQ--HDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRL 89 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~--~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~--~r~~lI~~ 89 (240)
++.+.+...+..+.+ ++|+|+. |.-+ +.+..|-+.||+-|=|.--..++.+- .=.+++++
T Consensus 56 ~g~~~~~~~v~~aa~~~~~VPValHLDHg~~~------------e~~~~ai~~GFtSVMiDgS~~p~eeNi~~Tk~vv~~ 123 (307)
T 3n9r_A 56 MGIDMAVGMVKIMCERYPHIPVALHLDHGTTF------------ESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKM 123 (307)
T ss_dssp HCHHHHHHHHHHHHHHSTTSCEEEEEEEECSH------------HHHHHHHHHTCSEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEECCCCCCH------------HHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 344445555544433 5666653 3333 34455678999999985544433321 22367788
Q ss_pred HHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec---cccccC--C
Q 026320 90 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKH--A 164 (240)
Q Consensus 90 ~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~--~ 164 (240)
++..|.-|--|+|.--+ .+|..-... .+..-.||++..+.+++ -|.|.+=+== -|.|.. +
T Consensus 124 ah~~gvsVEaELG~igG------~Ed~~~~~~------~~~~yT~Peea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~ 188 (307)
T 3n9r_A 124 AHNAGVSVEAELGRLMG------IEDNISVDE------KDAVLVNPKEAEQFVKE---SQVDYLAPAIGTSHGAFKFKGE 188 (307)
T ss_dssp HHHTTCEEEEEESCCCC------C----------------CCSCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCCSSS
T ss_pred HHHcCCeEEEEeeeecc------ccCCccccc------ccccCCCHHHHHHHHHH---HCCCEEEEecCCcccccCCCCC
Confidence 88999999999998321 111100000 00011378888887774 6888765532 289973 4
Q ss_pred CCccHHHHHHHHhccCCCceEEecC--CchhHHHHHHHhCCCccc--ccCCCCc
Q 026320 165 DSLRADIIAKVIGRLGLEKTMFEAT--NPRTSEWFIRRYGPKVNL--FVDHSQV 214 (240)
Q Consensus 165 g~~r~d~v~~i~~~~~~~~lifEAP--~k~qQ~~~I~~fG~~VNL--gI~~~dV 214 (240)
-.++.|.+++|-+..+.- |.+==- -|+.-...|+.||-++.= ||+.+|+
T Consensus 189 p~Ld~~~L~~I~~~~~~P-LVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i 241 (307)
T 3n9r_A 189 PKLDFERLQEVKRLTNIP-LVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFL 241 (307)
T ss_dssp CCCCHHHHHHHHHHHCSC-EEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHH
T ss_pred CccCHHHHHHHHhcCCCC-eEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHH
Confidence 578999999994322322 444432 366777889999998876 4666655
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=88.78 E-value=2.5 Score=37.92 Aligned_cols=92 Identities=21% Similarity=0.317 Sum_probs=63.9
Q ss_pred HHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 59 EDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti-----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+..-+.|..+|-|-||.. -+|.++.++-|+.+++.+- .+.|-++- ..|.. +
T Consensus 101 ~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~--~~~~~i~a-------Rtda~---------~ 162 (295)
T 1xg4_A 101 KSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKT--DPDFVIMA-------RTDAL---------A 162 (295)
T ss_dssp HHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCS--STTSEEEE-------EECCH---------H
T ss_pred HHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhcc--CCCcEEEE-------ecHHh---------h
Confidence 333457999999999972 4788888888888888643 23344431 11110 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
....++.|++++...+|||+.|.+|+.- ..+++.+|.+.++
T Consensus 163 ----~~gl~~ai~ra~ay~eAGAd~i~~e~~~--------~~~~~~~i~~~~~ 203 (295)
T 1xg4_A 163 ----VEGLDAAIERAQAYVEAGAEMLFPEAIT--------ELAMYRQFADAVQ 203 (295)
T ss_dssp ----HHCHHHHHHHHHHHHHTTCSEEEETTCC--------SHHHHHHHHHHHC
T ss_pred ----hcCHHHHHHHHHHHHHcCCCEEEEeCCC--------CHHHHHHHHHHcC
Confidence 1246899999999999999999999851 3567777777665
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=88.73 E-value=1.4 Score=39.85 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=62.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc-------------ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS-------------LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRA 117 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt-------------i~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~ 117 (240)
+.+.+..+.+++.|||.|||+-|+ +.-..+.-.++|+.+++. ++ | +++|... | -++
T Consensus 70 ~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~---P-V~vKiR~---g-~~~-- 139 (350)
T 3b0p_A 70 KSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRV---P-VTVKMRL---G-LEG-- 139 (350)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSS---C-EEEEEES---C-BTT--
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCC---c-eEEEEec---C-cCc--
Confidence 456666777788899999999652 233344455677777663 32 2 5554311 1 001
Q ss_pred cccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc---cccC-----CCCccHHHHHHHHhcc
Q 026320 118 FGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD---VCKH-----ADSLRADIIAKVIGRL 179 (240)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg---i~d~-----~g~~r~d~v~~i~~~~ 179 (240)
..+.++.++.++...++|++.|+|-+|. -|.. ......+.+.++.+.+
T Consensus 140 --------------~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~ 195 (350)
T 3b0p_A 140 --------------KETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDF 195 (350)
T ss_dssp --------------CCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHC
T ss_pred --------------cccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhC
Confidence 0134677888888889999999999872 1111 0123456666666554
|
| >1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* | Back alignment and structure |
|---|
Probab=88.69 E-value=1.5 Score=39.36 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCcccCChhHHHHHHHHHHHcCCcccceee
Q 026320 29 RAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLEIPEETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 29 l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS------dGti~l~~~~r~~lI~~~~~~G~~v~~E~g 102 (240)
.+.+||+..|.. .| ..++.++.+|++|+++|-|. .|.-+ .+.-.+++++|+++||+|.-.|+
T Consensus 14 ~~e~~g~~~~~~--------~G--~~~d~~~ilk~~G~N~VRi~~w~~P~~g~~~--~~~~~~~~~~A~~~GlkV~ld~H 81 (332)
T 1hjs_A 14 VEERAGVSYKNT--------NG--NAQPLENILAANGVNTVRQRVWVNPADGNYN--LDYNIAIAKRAKAAGLGVYIDFH 81 (332)
T ss_dssp HHHHTTCCCBCT--------TS--CBCCHHHHHHHTTCCEEEEEECSSCTTCTTS--HHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHcCCEEECC--------CC--CcccHHHHHHHCCCCEEEEeeeeCCCCCcCC--HHHHHHHHHHHHHCCCEEEEEec
Confidence 356677766641 12 33456788899999999994 45433 35667899999999999999987
Q ss_pred ee
Q 026320 103 VM 104 (240)
Q Consensus 103 ~k 104 (240)
..
T Consensus 82 ys 83 (332)
T 1hjs_A 82 YS 83 (332)
T ss_dssp CS
T ss_pred cC
Confidence 74
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=88.68 E-value=2 Score=39.17 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
++++.++.++..-++|+++|-+=+.+
T Consensus 244 ~~~~~~~la~~L~~~Gvd~i~vs~g~ 269 (363)
T 3l5l_A 244 TLEESIELARRFKAGGLDLLSVSVGF 269 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 57888888998889999999886643
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=3.5 Score=36.49 Aligned_cols=144 Identities=13% Similarity=0.141 Sum_probs=97.7
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C--CcccceeeeecCCCCCCCcccccccccccc
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G--LKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G--~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+. |+ |
T Consensus 28 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpvia--Gv-------g------------- 85 (301)
T 3m5v_A 28 QSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLA--GA-------G------------- 85 (301)
T ss_dssp HHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEE--EC-------C-------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEE--eC-------C-------------
Confidence 368889999999999999775433 479999999999999884 2 22221 22 1
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHH
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKV 175 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i 175 (240)
..+..+.|+.+++.-++|||-|++=.- -+|+. .-++..+.+.++
T Consensus 86 -------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L 158 (301)
T 3m5v_A 86 -------SNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKL 158 (301)
T ss_dssp -------CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCHHHHHHH
Confidence 114688899999999999999999762 13653 346778888888
Q ss_pred HhccC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 176 IGRLG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 176 ~~~~~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.+..| +-=+=...++-.+...++++. ++..+. .-+|-+.+++|..|--|
T Consensus 159 a~~~pnivgiKdssgd~~~~~~~~~~~-~~f~v~-~G~d~~~~~~l~~G~~G 208 (301)
T 3m5v_A 159 FRDCENIYGVKEASGNIDKCVDLLAHE-PRMMLI-SGEDAINYPILSNGGKG 208 (301)
T ss_dssp HHHCTTEEEEEECSSCHHHHHHHHHHC-TTSEEE-ECCGGGHHHHHHTTCCE
T ss_pred HhcCCCEEEEEeCCCCHHHHHHHHHhC-CCeEEE-EccHHHHHHHHHcCCCE
Confidence 75323 211222345667777788887 776664 33445578888876444
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=88.39 E-value=0.42 Score=43.38 Aligned_cols=130 Identities=18% Similarity=0.260 Sum_probs=74.0
Q ss_pred ccccccChhHHHHHHHHHHhC-------CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----C--C
Q 026320 13 GSHSLMPKPFIEEVVKRAHQH-------DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----I--P 79 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~-------gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~----l--~ 79 (240)
|-+..-....+.|.++-.++. +|++++..|.+--+. .+...++.+.+.+.|.++|+||+|... + +
T Consensus 195 GGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~--~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~ 272 (349)
T 3hgj_A 195 GGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWS--LEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLA 272 (349)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCC--HHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCC
T ss_pred CcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCC--HHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCC
Confidence 333333334566777766653 345666434321000 012345666777889999999987542 1 2
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcC-CcEEEEecc
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAG-ADMIMIDSD 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAG-A~~ViiEar 158 (240)
......+++.+++. +++. .--+| .. .| .+.+++.|++| ||.|++ +|
T Consensus 273 ~~~~~~~~~~ir~~-------~~iP--Vi~~G--------gi-----------~t----~e~a~~~l~~G~aD~V~i-GR 319 (349)
T 3hgj_A 273 PGFQVPFADAVRKR-------VGLR--TGAVG--------LI-----------TT----PEQAETLLQAGSADLVLL-GR 319 (349)
T ss_dssp TTTTHHHHHHHHHH-------HCCE--EEECS--------SC-----------CC----HHHHHHHHHTTSCSEEEE-ST
T ss_pred ccccHHHHHHHHHH-------cCce--EEEEC--------CC-----------CC----HHHHHHHHHCCCceEEEe-cH
Confidence 22345667777663 2211 10011 11 12 45677889999 999998 67
Q ss_pred ccccCCCCccHHHHHHHHhccCCC
Q 026320 159 DVCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 159 gi~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
.+.. ++|++.++.+.++.+
T Consensus 320 ~~la-----nPdl~~k~~~~l~~~ 338 (349)
T 3hgj_A 320 VLLR-----DPYFPLRAAKALGVA 338 (349)
T ss_dssp HHHH-----CTTHHHHHHHHTTCC
T ss_pred HHHh-----CchHHHHHHHHCCCC
Confidence 6653 267889999888843
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=88.35 E-value=3.5 Score=36.93 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=64.9
Q ss_pred HHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 57 YVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
-.+..-+.|..+|-|-|+.. -.|.++..+-|+.+++.+-. +.|-++- ..|..
T Consensus 95 ~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~--~~~~i~a-------Rtda~------ 159 (290)
T 2hjp_A 95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARAD--RDFVVIA-------RVEAL------ 159 (290)
T ss_dssp HHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSS--TTSEEEE-------EECTT------
T ss_pred HHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhccc--CCcEEEE-------eehHh------
Confidence 33444458999999999873 36777777788877776432 3444431 11210
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
+. ....++.|++++...+||||.|.+|++ -...+++.+|.+.++
T Consensus 160 ---~a---~~g~~~ai~Ra~ay~eAGAd~i~~e~~-------~~~~~~~~~i~~~~~ 203 (290)
T 2hjp_A 160 ---IA---GLGQQEAVRRGQAYEEAGADAILIHSR-------QKTPDEILAFVKSWP 203 (290)
T ss_dssp ---TT---TCCHHHHHHHHHHHHHTTCSEEEECCC-------CSSSHHHHHHHHHCC
T ss_pred ---hc---cccHHHHHHHHHHHHHcCCcEEEeCCC-------CCCHHHHHHHHHHcC
Confidence 00 113689999999999999999999984 122477888888776
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=88.30 E-value=4 Score=36.12 Aligned_cols=76 Identities=12% Similarity=0.147 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
-++.++.+++.|++.+-++--+. ..+.+++.+.++.+++.|+++.+ +.-.+..
T Consensus 151 ~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~--~~i~Glg--------------- 213 (350)
T 3t7v_A 151 DNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVED--GILTGVG--------------- 213 (350)
T ss_dssp CHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEE--EEEESSS---------------
T ss_pred CHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEcc--ceEeecC---------------
Confidence 45677788888888877655444 35678899999999999987544 5543321
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
++.+++++.++.-.+.+.+.|-+
T Consensus 214 ---------et~e~~~~~l~~l~~l~~~~v~~ 236 (350)
T 3t7v_A 214 ---------NDIESTILSLRGMSTNDPDMVRV 236 (350)
T ss_dssp ---------CCHHHHHHHHHHHHHTCCSEEEE
T ss_pred ---------CCHHHHHHHHHHHHhCCCCEEEe
Confidence 14678888888888889987765
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=1.6 Score=38.57 Aligned_cols=111 Identities=14% Similarity=0.226 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHcCC
Q 026320 19 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSAGL 95 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~G~ 95 (240)
+.+.+++-++.+|++|+.+.. |+ . ..++ ++.+.++|.+.|=|++- +...+.+.-.++.+.+. .+.
T Consensus 147 ~~~~l~~l~~~a~~lGl~~lv----ev---~---t~ee-~~~A~~~Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~-~~~ 214 (272)
T 3qja_A 147 EQSVLVSMLDRTESLGMTALV----EV---H---TEQE-ADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLP-SSV 214 (272)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE----EE---S---SHHH-HHHHHHHTCSEEEEESBCTTTCCBCTTHHHHHGGGSC-TTS
T ss_pred CHHHHHHHHHHHHHCCCcEEE----Ec---C---CHHH-HHHHHHCCCCEEEECCCcccccccCHHHHHHHHHhCc-ccC
Confidence 455688888888888886532 11 1 3333 44556778999888853 23344343333332221 156
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHH
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKV 175 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i 175 (240)
.+..|.|++ + .+.+++.+++||+-|+| ++.++.... -...+.++
T Consensus 215 pvVaegGI~-----------------------------t----~edv~~l~~~GadgvlV-Gsal~~a~d--p~~~~~~l 258 (272)
T 3qja_A 215 IRIAESGVR-----------------------------G----TADLLAYAGAGADAVLV-GEGLVTSGD--PRAAVADL 258 (272)
T ss_dssp EEEEESCCC-----------------------------S----HHHHHHHHHTTCSEEEE-CHHHHTCSC--HHHHHHHH
T ss_pred EEEEECCCC-----------------------------C----HHHHHHHHHcCCCEEEE-cHHHhCCCC--HHHHHHHH
Confidence 666777773 1 34556668999999998 344665543 13344555
Q ss_pred Hh
Q 026320 176 IG 177 (240)
Q Consensus 176 ~~ 177 (240)
++
T Consensus 259 ~~ 260 (272)
T 3qja_A 259 VT 260 (272)
T ss_dssp HT
T ss_pred Hh
Confidence 54
|
| >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=87.87 E-value=0.66 Score=40.05 Aligned_cols=157 Identities=17% Similarity=0.156 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC--cccC-----ChhHHHHHHHHHHHcCCcccceeeeec-------CCCCCCCcccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG--SLEI-----PEETLLRYVRLVKSAGLKAKPKFAVMF-------NKSDIPSDRDRAF 118 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG--ti~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k~-------~~~evg~~~d~~~ 118 (240)
.+++.++.++++||+.||+... .+++ +.+...++.+.+++.|+++.+ ++.-. |..+.. .+ .|
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~~~~g~~~~~p~~~~~--~~-~~ 91 (340)
T 2zds_A 16 PLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWA-ISNHLVGQAVCDAIIDER--HE-AI 91 (340)
T ss_dssp CHHHHHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEE-EEEHHHHHHHHCSCCSHH--HH-HH
T ss_pred CHHHHHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeEEE-eecccccccccccccccc--cc-cc
Confidence 7899999999999999999863 3332 345567888999999999854 22210 100000 00 00
Q ss_pred c-ccccc-CCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccc-ccCCC-------CccHH-------HHH---HHHhc
Q 026320 119 G-AYVAR-APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDV-CKHAD-------SLRAD-------IIA---KVIGR 178 (240)
Q Consensus 119 ~-~~~~~-~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi-~d~~g-------~~r~d-------~v~---~i~~~ 178 (240)
. ..+.. ...........+.+.+.++..-+.||..|++-.-.. .+... ..+.+ .+. ++++.
T Consensus 92 ~~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~ 171 (340)
T 2zds_A 92 LPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDA 171 (340)
T ss_dssp SCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 000000111245566666667788999999864211 11000 00111 122 23334
Q ss_pred cCCCceEEec------CCchhHHHHHHHhC--CCcccccCCCCc
Q 026320 179 LGLEKTMFEA------TNPRTSEWFIRRYG--PKVNLFVDHSQV 214 (240)
Q Consensus 179 ~~~~~lifEA------P~k~qQ~~~I~~fG--~~VNLgI~~~dV 214 (240)
.|+ +|.+|. ....+-..++++.| |+|-+..|....
T Consensus 172 ~Gv-~l~lEn~~~~~~~~~~~~~~ll~~v~~~~~vg~~~D~~H~ 214 (340)
T 2zds_A 172 EGV-RFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHF 214 (340)
T ss_dssp HTC-EEEEECCTTSSCCSHHHHHHHHHHTTTCTTEEEEECCHHH
T ss_pred cCC-EEEEEcCCCcccCCHHHHHHHHHhcCCCCCeeEEEchhhH
Confidence 455 677885 34456678999998 666655665544
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.76 E-value=5.8 Score=34.89 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g--------------- 77 (294)
T 2ehh_A 22 ALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVI--AGT-------G--------------- 77 (294)
T ss_dssp HHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 6788899999999999987543 3489999999999999873 2 1111 222 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~---~g-~~r~d~v~~i~~ 177 (240)
..+..+.|+.+++.-++|||.|++=.- -+|+. .| ++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (294)
T 2ehh_A 78 -----GNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLAS 152 (294)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHh
Confidence 114688899999999999999998652 13663 23 678899999973
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+. .+|+- |+ ++-.+...+++..+++..+. .-+|-+.+++|..|--|
T Consensus 153 ~~--pnivgiKds~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (294)
T 2ehh_A 153 EC--ENIVASKESTPNMDRISEIVKRLGESFSVL-SGDDSLTLPMMALGAKG 201 (294)
T ss_dssp HC--TTEEEEEECCSCHHHHHHHHHHHCTTSEEE-ESSGGGHHHHHHTTCCE
T ss_pred hC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEE-ECcHHHHHHHHHCCCCE
Confidence 44 34442 55 46667778888888776654 33455678899877444
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=87.66 E-value=2.1 Score=37.68 Aligned_cols=108 Identities=11% Similarity=0.057 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 21 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~gVi--aGv-------g--~--------------- 74 (288)
T 2nuw_A 21 ALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHKLI--FQV-------G--S--------------- 74 (288)
T ss_dssp HHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCeE--Eee-------C--C---------------
Confidence 67888999999999999876543 47999999999999987411011 222 1 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccc-CCCCccHHHHHHHHhccCCCceEEecC
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
.+..+.|+.+++.-++|||.|++=.--.+. ...+---+-..+|++..++-=++.--|
T Consensus 75 ---~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P 132 (288)
T 2nuw_A 75 ---LNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYP 132 (288)
T ss_dssp ---SCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECH
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECc
Confidence 146888999999999999999986643222 111111122235555556555666655
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=87.57 E-value=4.8 Score=35.74 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 36 ~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvi--aGv-------g-------------- 92 (304)
T 3l21_A 36 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVI--AGA-------G-------------- 92 (304)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--EeC-------C--------------
Confidence 368889999999999999775443 479999999999999883 1 1111 122 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~ 176 (240)
..+..+.++.+++.-++|||-|++=.- -+|+. .-++..+.+.++.
T Consensus 93 ------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 166 (304)
T 3l21_A 93 ------TYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDIPGRSAVPIEPDTIRALA 166 (304)
T ss_dssp ------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 114688899999999999999999762 13542 2356667777766
Q ss_pred hccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCcc
Q 026320 177 GRLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRN 224 (240)
Q Consensus 177 ~~~~~~~li--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~ 224 (240)
+.| +++ =|+ .+-.+...++. +++..+. .-+|-+-+++|..|-
T Consensus 167 -~~p--nIvgiKdssgd~~~~~~~~~--~~~f~v~-~G~d~~~l~~l~~Ga 211 (304)
T 3l21_A 167 -SHP--NIVGVXDAKADLHSGAQIMA--DTGLAYY-SGDDALNLPWLRMGA 211 (304)
T ss_dssp -TST--TEEEEEECSCCHHHHHHHHH--HHCCEEE-ESSGGGHHHHHHHTC
T ss_pred -cCC--CEEEEECCCCCHHHHHHHhc--CCCeEEE-eCchHHHHHHHHcCC
Confidence 333 222 233 34444444442 3444443 333445567777553
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=87.44 E-value=3.7 Score=36.07 Aligned_cols=141 Identities=11% Similarity=0.099 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--~Gv-------g--------------- 78 (291)
T 3a5f_A 23 KLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVI--AGT-------G--------------- 78 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C---------------
Confidence 6788889988999999987654 3489999999999999873 2 1111 232 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccC----CCCccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH----ADSLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~----~g~~r~d~v~~i~~ 177 (240)
..+..+.++++++.-++|||-|++=.- | +|+. .-++..+.+.++++
T Consensus 79 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (291)
T 3a5f_A 79 -----SNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKELCE 153 (291)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHHTT
T ss_pred -----cccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 114688899999999999999998652 1 3553 23577888888863
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
. .+|+- |+ ++-.+...+++..++++.+. .-+|-+.+++|..|--|
T Consensus 154 -~--pnivgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (291)
T 3a5f_A 154 -D--KNIVAVXEASGNISQIAQIKALCGDKLDIY-SGNDDQIIPILALGGIG 201 (291)
T ss_dssp -S--TTEEEEEECSCCHHHHHHHHHHHGGGSEEE-ESCGGGHHHHHHTTCCE
T ss_pred -C--CCEEEEeCCCCCHHHHHHHHHhcCCCeEEE-eCcHHHHHHHHHCCCCE
Confidence 3 45542 55 56677778888888766553 33455688899877444
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.43 E-value=5.8 Score=34.99 Aligned_cols=141 Identities=14% Similarity=0.086 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 29 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g--------------- 84 (297)
T 3flu_A 29 QLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVI--AGT-------G--------------- 84 (297)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C---------------
Confidence 67888999999999999875444 379999999999999873 1 1111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~~ 177 (240)
..+..+.++.+++.-++|||-|++=.- -+|+. .-++..+.+.++.
T Consensus 85 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La- 158 (297)
T 3flu_A 85 -----ANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLA- 158 (297)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHT-
T ss_pred -----CcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHH-
Confidence 114688899999999999999998762 13653 3467788888886
Q ss_pred ccCCCceE--Eec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTM--FEA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~li--fEA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+.| +++ =|+ .+..+...++++.+++..+.-- +|-+.+++|..|--|
T Consensus 159 ~~p--nivgiKdssgd~~~~~~~~~~~~~~f~v~~G-~d~~~l~~l~~G~~G 207 (297)
T 3flu_A 159 EIP--NIVGVKEASGNIGSNIELINRAPEGFVVLSG-DDHTALPFMLCGGHG 207 (297)
T ss_dssp TST--TEEEEEECSCCHHHHHHHHHHSCTTCEEEEC-CGGGHHHHHHTTCCE
T ss_pred cCC--CEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC-cHHHHHHHHhCCCCE
Confidence 443 332 244 5667777888888888777533 345578888876444
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=87.43 E-value=2.9 Score=37.13 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 33 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVi--aGv-------g--------------- 88 (303)
T 2wkj_A 33 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLI--AHV-------G--------------- 88 (303)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 6888999999999999988643 3489999999999999873 1 1111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc---------------------c-----cccC---CC-CccHHHHHHHH
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---------------------D-----VCKH---AD-SLRADIIAKVI 176 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar---------------------g-----i~d~---~g-~~r~d~v~~i~ 176 (240)
..+..+.|+.++..-++|||.|++=.- + +|+. .| ++..+.+.+++
T Consensus 89 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~P~~tg~~l~~~~~~~La 163 (303)
T 2wkj_A 89 -----CVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLV 163 (303)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 114688899999999999999998652 1 2442 23 46677777776
Q ss_pred hccCCCceEE--ecC-CchhHHHHHHHhCCCcccccCCCCchhhhhhhCcc
Q 026320 177 GRLGLEKTMF--EAT-NPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRN 224 (240)
Q Consensus 177 ~~~~~~~lif--EAP-~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~ 224 (240)
+ . .+|+- |+. +-.+...+++. +++..+.--. |-+.+++|..|-
T Consensus 164 ~-~--pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~-d~~~~~~l~~G~ 209 (303)
T 2wkj_A 164 T-L--PGVGALXQTSGDLYQMEQIRRE-HPDLVLYNGY-DNIFASGLLAGA 209 (303)
T ss_dssp T-S--TTEEEEEECCCCHHHHHHHHHH-CTTCEEEECC-GGGHHHHHHHTC
T ss_pred c-C--CCEEEEeCCCCCHHHHHHHHHh-CCCeEEEeCc-HHHHHHHHHCCC
Confidence 3 2 34432 443 44455555555 5554443333 334677777553
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=87.42 E-value=0.57 Score=39.24 Aligned_cols=75 Identities=16% Similarity=0.070 Sum_probs=55.4
Q ss_pred ChhHHHHHHHHHHhCCceecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcc
Q 026320 19 PKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 97 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v 97 (240)
+++.+++-.++++++|+.++. +.+.- +....+++.++.|+++|.+.|=+.-| .+...++.+.+++.|.++
T Consensus 59 ~~~~~~~~~~~l~~~gl~i~~~~~~~~----~~~~~~~~~i~~A~~lGa~~v~~~p~-----~~~l~~l~~~a~~~gv~l 129 (257)
T 3lmz_A 59 TDEQIRAFHDKCAAHKVTGYAVGPIYM----KSEEEIDRAFDYAKRVGVKLIVGVPN-----YELLPYVDKKVKEYDFHY 129 (257)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEEEEE----CSHHHHHHHHHHHHHHTCSEEEEEEC-----GGGHHHHHHHHHHHTCEE
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecccc----CCHHHHHHHHHHHHHhCCCEEEecCC-----HHHHHHHHHHHHHcCCEE
Confidence 345577777888888887664 22111 22237889999999999999998654 577788999999999987
Q ss_pred cceee
Q 026320 98 KPKFA 102 (240)
Q Consensus 98 ~~E~g 102 (240)
.-|-.
T Consensus 130 ~lEn~ 134 (257)
T 3lmz_A 130 AIHLH 134 (257)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 76655
|
| >1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5 | Back alignment and structure |
|---|
Probab=87.41 E-value=1.2 Score=36.90 Aligned_cols=142 Identities=14% Similarity=0.112 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecC-CC--CCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KS--DIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~-~~--evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+++.++.++++||+.||+..- .+ .+..++-+.+++.|+++.+ ++.-.. .. +-+...|+ .
T Consensus 16 ~~~~~l~~~~~~G~~~vEl~~~-~~---~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~g~~~~~~~~--------~---- 78 (260)
T 1k77_A 16 PFIERFAAARKAGFDAVEFLFP-YN---YSTLQIQKQLEQNHLTLAL-FNTAPGDINAGEWGLSALP--------G---- 78 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TT---SCHHHHHHHHHHTTCEEEE-EECCCCCGGGTCSCSTTCT--------T----
T ss_pred CHHHHHHHHHHhCCCEEEecCC-CC---CCHHHHHHHHHHcCCceEE-EecCCcccccccCCCCCCh--------h----
Confidence 6788899999999999999852 12 2345677888999999775 332100 00 00000011 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccH-------HHHHH---HHhccCCCceEEecC----------
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRA-------DIIAK---VIGRLGLEKTMFEAT---------- 189 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~-------d~v~~---i~~~~~~~~lifEAP---------- 189 (240)
......+.+.+.++..-+.||..|.+-. |.+.. +.-+. +.+.+ .++..|+ ++.+|.=
T Consensus 79 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~-g~~~~-~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~~E~~~~~~~~~~~~ 155 (260)
T 1k77_A 79 REHEAHADIDLALEYALALNCEQVHVMA-GVVPA-GEDAERYRAVFIDNIRYAADRFAPHGK-RILVEALSPGVKPHYLF 155 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCC-CBCCT-TSCHHHHHHHHHHHHHHHHHHHGGGTC-EEEECCCCTTTSTTBSC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECc-CCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-EEEEEeCCccCCCcCcc
Confidence 0112345556666666688999998854 22211 11111 22222 2334444 5777753
Q ss_pred -CchhHHHHHHHhCC-CcccccCCCCc
Q 026320 190 -NPRTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 190 -~k~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
...+-..++++.|+ +|-+-.|..+.
T Consensus 156 ~~~~~~~~l~~~~~~~~~g~~~D~~h~ 182 (260)
T 1k77_A 156 SSQYQALAIVEEVARDNVFIQLDTFHA 182 (260)
T ss_dssp CSHHHHHHHHHHHCCTTEEEEEEHHHH
T ss_pred CCHHHHHHHHHHhCCCCEEEEeeHHHH
Confidence 33467788999985 45443444333
|
| >1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A | Back alignment and structure |
|---|
Probab=87.38 E-value=2.1 Score=38.44 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=46.2
Q ss_pred HHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeee
Q 026320 30 AHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 30 ~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI------SdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
..++|+..|.. .| ..++.++.+|++|+++|-+ +.|..+ .+.-++++++++++||+|.-.|..
T Consensus 15 ~e~~g~~~~~~--------~G--~~~~~~~ilk~~G~n~vRlri~v~P~~g~~d--~~~~~~~~~~ak~~Gl~v~ld~hy 82 (334)
T 1fob_A 15 LEDEGYSYKNL--------NG--QTQALETILADAGINSIRQRVWVNPSDGSYD--LDYNLELAKRVKAAGMSLYLDLHL 82 (334)
T ss_dssp HHHTTCCCBCT--------TS--CBCCHHHHHHHHTCCEEEEEECSCCTTCTTC--HHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHcCCEEECC--------CC--CCchHHHHHHHcCCCEEEEEEEECCCCCccC--HHHHHHHHHHHHHCCCEEEEEecc
Confidence 35567766541 12 3345688999999999999 355444 566678999999999999998876
Q ss_pred e
Q 026320 104 M 104 (240)
Q Consensus 104 k 104 (240)
.
T Consensus 83 s 83 (334)
T 1fob_A 83 S 83 (334)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.36 E-value=2.1 Score=38.02 Aligned_cols=67 Identities=9% Similarity=0.144 Sum_probs=40.5
Q ss_pred cccEEEecCcccc------ccChhHHHHHHHHHHhC----------Cceec---CCcHHHHHHHhCCchHHHHHHHHHHc
Q 026320 4 FVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH----------DVYVS---TGDWAEHLIRNGPSAFKEYVEDCKQV 64 (240)
Q Consensus 4 yID~lKfg~GTs~------l~p~~~l~eKi~l~~~~----------gV~v~---~Gtl~E~a~~qg~~~~~~yl~~~k~l 64 (240)
+.|++=+-+++-. +...+.+.+.++-.++. ++++. ..+|- . +.+.++.+.+.+.
T Consensus 165 g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~-----~--~~~~~~a~~l~~~ 237 (336)
T 1f76_A 165 YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLS-----E--EELIQVADSLVRH 237 (336)
T ss_dssp GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCC-----H--HHHHHHHHHHHHT
T ss_pred cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCC-----H--HHHHHHHHHHHHc
Confidence 4566655554332 33445556666666543 45442 12221 1 1466778899999
Q ss_pred CCCEEEecCCccc
Q 026320 65 GFDTIELNVGSLE 77 (240)
Q Consensus 65 GF~~IEISdGti~ 77 (240)
|.|+|.+|+++..
T Consensus 238 Gvd~i~vsn~~~~ 250 (336)
T 1f76_A 238 NIDGVIATNTTLD 250 (336)
T ss_dssp TCSEEEECCCBCC
T ss_pred CCcEEEEeCCccc
Confidence 9999999998753
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=87.28 E-value=7.4 Score=35.54 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=93.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 56 EYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
+.+..|-+.||+-|=|.--. +|.++= .+++++++..|.-|--|+|.--+ .|-+. +. ....
T Consensus 89 e~i~~ai~~GFtSVMiDgS~--~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg-~Ed~v--~~--~~~y--------- 152 (323)
T 2isw_A 89 ESVKMAIDLGFSSVMIDASH--HPFDENVRITKEVVAYAHARSVSVEAELGTLGG-IEEDV--QN--TVQL--------- 152 (323)
T ss_dssp HHHHHHHHTTCSEEEECCTT--SCHHHHHHHHHHHHHHHHTTTCEEEEEESCC---------------CCC---------
T ss_pred HHHHHHHHcCCCeEEecCCC--CCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccC-CccCc--cc--cccc---------
Confidence 45777889999999885544 454443 36778888999999999998421 11111 00 0111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEec---ccccc--CCCC--ccHHHHHHHHhccCCCceEEecC-CchhHHHHHHHhCC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDS---DDVCK--HADS--LRADIIAKVIGRLGLEKTMFEAT-NPRTSEWFIRRYGP 203 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d--~~g~--~r~d~v~~i~~~~~~~~lifEAP-~k~qQ~~~I~~fG~ 203 (240)
.||++..+.+++ -|.|.+=+== -|.|. .+-. ++.|.+++|-+.++.-=++==+. -|+.....|+.||-
T Consensus 153 -TdPeea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~gg 228 (323)
T 2isw_A 153 -TEPQDAKKFVEL---TGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGG 228 (323)
T ss_dssp -CCHHHHHHHHHH---HCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTTC
T ss_pred -CCHHHHHHHHHH---HCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhcc
Confidence 278888888774 6888665532 28998 4444 88999999988886443444333 56778889999999
Q ss_pred Cccc--ccCCCCchhhhhhhCc
Q 026320 204 KVNL--FVDHSQVMDLECLRGR 223 (240)
Q Consensus 204 ~VNL--gI~~~dVl~LE~LR~~ 223 (240)
++.= ||+.+|+- +|.+.|
T Consensus 229 ~~~~~~Gvp~e~i~--~ai~~G 248 (323)
T 2isw_A 229 KMPDAVGVPIESIV--HAIGEG 248 (323)
T ss_dssp CCTTCBCCCHHHHH--HHHHTT
T ss_pred ccccCCCCCHHHHH--HHHHCC
Confidence 9876 47766652 344444
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=4.2 Score=35.83 Aligned_cols=77 Identities=21% Similarity=0.128 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.-=.|+ .|+ | .
T Consensus 21 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~gvi--aGv-------g--~--------------- 74 (293)
T 1w3i_A 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKII--FQV-------G--G--------------- 74 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEE--EEC-------C--C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCCEE--Eec-------C--C---------------
Confidence 57888899999999999886543 47999999999999988411111 222 1 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.+..+.|+.+++.-++|||.|++=.-
T Consensus 75 ---~~t~~ai~la~~A~~~Gadavlv~~P 100 (293)
T 1w3i_A 75 ---LNLDDAIRLAKLSKDFDIVGIASYAP 100 (293)
T ss_dssp ---SCHHHHHHHHHHGGGSCCSEEEEECC
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 14688899999999999999998653
|
| >3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=87.24 E-value=0.52 Score=39.89 Aligned_cols=136 Identities=13% Similarity=0.192 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.+++.++.++++||++||+. +.. + +..++-+.+++.|+++..- ...... + |. ...
T Consensus 32 ~~~~~l~~~~~~G~~~vEl~-~~~--~--~~~~~~~~l~~~gl~~~~~-~~~~~~-------~--------~~----~~~ 86 (301)
T 3cny_A 32 NLQQLLSDIVVAGFQGTEVG-GFF--P--GPEKLNYELKLRNLEIAGQ-WFSSYI-------I--------RD----GIE 86 (301)
T ss_dssp CHHHHHHHHHHHTCCEECCC-TTC--C--CHHHHHHHHHHTTCEECEE-EEEECH-------H--------HH----HHH
T ss_pred CHHHHHHHHHHhCCCEEEec-CCC--C--CHHHHHHHHHHCCCeEEEE-eccCCC-------C--------hh----hHH
Confidence 68899999999999999998 333 3 5567888888999987763 221100 0 00 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEecc-----ccccC--C--CCc-cHHH-------H---HHHHhccCCCceEEecC---
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSD-----DVCKH--A--DSL-RADI-------I---AKVIGRLGLEKTMFEAT--- 189 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEar-----gi~d~--~--g~~-r~d~-------v---~~i~~~~~~~~lifEAP--- 189 (240)
...+.+.+.++..-+.||..|++=+- |.+.. . ... +.+. + .++++..|+ +|.+|.-
T Consensus 87 ~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~ 165 (301)
T 3cny_A 87 KASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGL-KVAYHHHMGT 165 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTC-EEEEECCTTS
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCC-EEEEecCCCc
Confidence 12455566666666889999887541 33211 0 111 2221 2 223334454 5778853
Q ss_pred ---CchhHHHHHHHhCC-CcccccCCCCc
Q 026320 190 ---NPRTSEWFIRRYGP-KVNLFVDHSQV 214 (240)
Q Consensus 190 ---~k~qQ~~~I~~fG~-~VNLgI~~~dV 214 (240)
.+.+-..++++.++ +|-+-.|..+.
T Consensus 166 ~~~~~~~~~~l~~~~~~~~vg~~~D~~h~ 194 (301)
T 3cny_A 166 GIQTKEETDRLMANTDPKLVGLLYDTGHI 194 (301)
T ss_dssp SSCSHHHHHHHHHTSCTTTCEEEEEHHHH
T ss_pred ccCCHHHHHHHHHhCCccceeEEechHHH
Confidence 45667788898884 35443544433
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.23 E-value=1.9 Score=36.88 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC-Cccc---CChhHHHHHHHHHHHcCCc
Q 026320 21 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLE---IPEETLLRYVRLVKSAGLK 96 (240)
Q Consensus 21 ~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~---l~~~~r~~lI~~~~~~G~~ 96 (240)
+.+++-++.+|++|+.+.... ... +..+.+.+.|+|+|=++. |... ....+ .++++++++.+..
T Consensus 116 ~~l~~~i~~~~~~g~~v~~~v----------~t~-eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~~-~~li~~l~~~~ip 183 (229)
T 3q58_A 116 VDIDSLLTRIRLHGLLAMADC----------STV-NEGISCHQKGIEFIGTTLSGYTGPITPVEPD-LAMVTQLSHAGCR 183 (229)
T ss_dssp SCHHHHHHHHHHTTCEEEEEC----------SSH-HHHHHHHHTTCSEEECTTTTSSSSCCCSSCC-HHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHCCCEEEEec----------CCH-HHHHHHHhCCCCEEEecCccCCCCCcCCCCC-HHHHHHHHHcCCC
Confidence 456666666666666555421 112 233456678888885432 2211 11112 3667777665666
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
|+.|-|+. + .+.+++.+++||+-|+| +..+++
T Consensus 184 vIA~GGI~-----------------------------t----~~d~~~~~~~GadgV~V-Gsai~~ 215 (229)
T 3q58_A 184 VIAEGRYN-----------------------------T----PALAANAIEHGAWAVTV-GSAITR 215 (229)
T ss_dssp EEEESSCC-----------------------------S----HHHHHHHHHTTCSEEEE-CHHHHC
T ss_pred EEEECCCC-----------------------------C----HHHHHHHHHcCCCEEEE-chHhcC
Confidence 66666662 2 35566778999999999 555553
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=87.19 E-value=3 Score=35.20 Aligned_cols=115 Identities=11% Similarity=0.087 Sum_probs=73.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
.+.|++.|.|+|-|-+---.+|.++-.++++.+++.|+.++.+++-. .
T Consensus 75 ~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~-------------------------------~- 122 (219)
T 2h6r_A 75 AEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNI-------------------------------N- 122 (219)
T ss_dssp HHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSS-------------------------------H-
T ss_pred HHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCc-------------------------------h-
Confidence 89999999999999554446888888999999999999999988751 0
Q ss_pred HHHHHHHHHHcCCcEEEEecccc--ccCC-CCccH---HHHHHHHhccC-CCceEEecCCc-hhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDV--CKHA-DSLRA---DIIAKVIGRLG-LEKTMFEATNP-RTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi--~d~~-g~~r~---d~v~~i~~~~~-~~~lifEAP~k-~qQ~~~I~~fG~~VNL 207 (240)
..++-.+.|+.+|=+|.+-. +... ....+ +.+.+++..+. --.++-|---+ ..+...+...|.|.=|
T Consensus 123 ---e~~~~~~~~~~~i~~~~~~~iGtG~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvl 197 (219)
T 2h6r_A 123 ---TSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVL 197 (219)
T ss_dssp ---HHHHHTTTCCSEEEECCCC--------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEE
T ss_pred ---HHHHHHhCCCCEEEEEeccccccCCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEE
Confidence 11222455888888888721 1100 01111 13334445444 23566666644 5777777888777555
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=87.14 E-value=3.5 Score=41.44 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
++.+++.+.+.|.+.|-|.+..-++ +.....|+.+++.|..|. +.+.. ..++. |+ ++ ..-
T Consensus 199 ~~~~i~~a~~~Gvd~irIf~s~n~l--~~l~~~i~~ak~~G~~v~--~~i~~-~~d~~---dp--------~r----~~~ 258 (718)
T 3bg3_A 199 VFKFCEVAKENGMDVFRVFDSLNYL--PNMLLGMEAAGSAGGVVE--AAISY-TGDVA---DP--------SR----TKY 258 (718)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSCCH--HHHHHHHHHHHTTTSEEE--EEEEC-CSCTT---CT--------TC----CTT
T ss_pred hHHHHHHHHhcCcCEEEEEecHHHH--HHHHHHHHHHHHcCCeEE--EEEEe-ecccc---CC--------CC----CCC
Confidence 6899999999999999999866543 456678999999996543 44432 11111 21 10 011
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
|++.+++.++...++||+.| .|+|..|-..+..+.++++
T Consensus 259 ~~e~~~~~a~~l~~~Ga~~I-----~l~DT~G~~~P~~v~~lV~ 297 (718)
T 3bg3_A 259 SLQYYMGLAEELVRAGTHIL-----CIKDMAGLLKPTACTMLVS 297 (718)
T ss_dssp CHHHHHHHHHHHHHHTCSEE-----EEECTTSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEE-----EEcCcCCCcCHHHHHHHHH
Confidence 58999999999999999866 4689999999988888875
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=87.00 E-value=4.6 Score=35.51 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=94.8
Q ss_pred hHHHHHHHHHH-cCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQ-VGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~-lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
.+.++++++-+ -|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 25 ~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g-------------- 81 (293)
T 1f6k_A 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALI--AQV-------G-------------- 81 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEC-------C--------------
T ss_pred HHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--Eec-------C--------------
Confidence 57888999889 999999886543 479999999999999873 1 1111 222 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~---~g-~~r~d~v~~i~ 176 (240)
..+..+.|+.++..-++|||.|++=.- -+|+. .| ++..+.+.+++
T Consensus 82 ------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 155 (293)
T 1f6k_A 82 ------SVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELY 155 (293)
T ss_dssp ------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHh
Confidence 114688899999999999999998652 13663 23 67788888887
Q ss_pred hccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+ . .+|+- |+ ++-.+...++++ +++..+.--.+ -+.+++|..|--|
T Consensus 156 ~-~--pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~d-~~~~~~l~~G~~G 203 (293)
T 1f6k_A 156 K-N--PKVLGVKFTAGDFYLLERLKKA-YPNHLIWAGFD-EMMLPAASLGVDG 203 (293)
T ss_dssp T-S--TTEEEEEECSCCHHHHHHHHHH-CTTSEEEECCG-GGHHHHHHTTCSE
T ss_pred c-C--CCEEEEEECCCCHHHHHHHHHh-CCCeEEEECcH-HHHHHHHHCCCcE
Confidence 3 3 44432 44 455566666665 66655543333 3578888876444
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=86.92 E-value=2.5 Score=37.64 Aligned_cols=139 Identities=9% Similarity=0.077 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 36 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g--------------- 91 (307)
T 3s5o_A 36 KLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLL--AGS-------G--------------- 91 (307)
T ss_dssp HHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEE--Eec-------C---------------
Confidence 67888999999999999776544 369999999999999884 1 1111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc----------c-----------------cccC---CC-CccHHHHHHH
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD----------D-----------------VCKH---AD-SLRADIIAKV 175 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar----------g-----------------i~d~---~g-~~r~d~v~~i 175 (240)
..+..+.|+.+++.-++|||.|++=.- | +|+. .| ++..+.+.++
T Consensus 92 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L 166 (307)
T 3s5o_A 92 -----CESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTL 166 (307)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhhcCCCEEEEeCCcccCCCCCHHHHHHH
Confidence 114688899999999999999998431 1 3553 12 5667777777
Q ss_pred HhccCCCceE--Eec-CCchhHHHHHHHh-CCCcccccCCCCchhhhhhhCcc
Q 026320 176 IGRLGLEKTM--FEA-TNPRTSEWFIRRY-GPKVNLFVDHSQVMDLECLRGRN 224 (240)
Q Consensus 176 ~~~~~~~~li--fEA-P~k~qQ~~~I~~f-G~~VNLgI~~~dVl~LE~LR~~~ 224 (240)
.+ .+ +++ =|+ .+-.+...++++. +++..+.--. |-+-+++|..|-
T Consensus 167 a~-~p--nIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~-d~~~l~~l~~G~ 215 (307)
T 3s5o_A 167 SQ-HP--NIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGS-AGFLMASYALGA 215 (307)
T ss_dssp HT-ST--TEEEEEECSCCHHHHHHHHHHTTTSSCEEEESS-GGGHHHHHHHTC
T ss_pred hc-CC--CEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCc-HHHHHHHHHcCC
Confidence 63 33 232 244 3455556666665 4666664333 335677777554
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=86.83 E-value=1.3 Score=36.34 Aligned_cols=102 Identities=10% Similarity=0.099 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHc--CC
Q 026320 20 KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA--GL 95 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~--l~~~~r~~lI~~~~~~--G~ 95 (240)
++.+++-++.++++|+.+...- -++....+.++.+.+.|.+.|=++.|+-. .+.. -.+.++++++. .+
T Consensus 89 ~~~~~~~~~~~~~~g~~~~v~~-------~~~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~~~-~~~~i~~l~~~~~~~ 160 (211)
T 3f4w_A 89 VLTIQSCIRAAKEAGKQVVVDM-------ICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRK-PIDDLITMLKVRRKA 160 (211)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEC-------TTCSSHHHHHHHHHHHTCCEEEEECCHHHHHTTCC-SHHHHHHHHHHCSSC
T ss_pred hhHHHHHHHHHHHcCCeEEEEe-------cCCCCHHHHHHHHHHcCCCEEEEcCCCcccccCCC-CHHHHHHHHHHcCCC
Confidence 3456777777777777543110 01123345566677888888877766321 1111 13455555553 34
Q ss_pred cccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCC
Q 026320 96 KAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHA 164 (240)
Q Consensus 96 ~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~ 164 (240)
.+....|+. .+.++..+++||+.|++= +.++...
T Consensus 161 ~i~~~gGI~----------------------------------~~~~~~~~~~Gad~vvvG-sai~~~~ 194 (211)
T 3f4w_A 161 RIAVAGGIS----------------------------------SQTVKDYALLGPDVVIVG-SAITHAA 194 (211)
T ss_dssp EEEEESSCC----------------------------------TTTHHHHHTTCCSEEEEC-HHHHTCS
T ss_pred cEEEECCCC----------------------------------HHHHHHHHHcCCCEEEEC-HHHcCCC
Confidence 444444441 124455678999999884 5677654
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=86.79 E-value=3.6 Score=36.41 Aligned_cols=141 Identities=16% Similarity=0.133 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g--------------- 77 (297)
T 2rfg_A 22 ALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVI--AGA-------G--------------- 77 (297)
T ss_dssp HHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--Ecc-------C---------------
Confidence 6788899999999999987543 3489999999999999873 2 1111 233 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~~ 177 (240)
..+..+.|+.++..-++|||.|++=.- -+|+. .-++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (297)
T 2rfg_A 78 -----SNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARLAA 152 (297)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 114688899999999999999998652 13653 23577888888864
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
. .+|+- |+ ++-.+...+++..+++..+. .-+|-+.+++|..|--|
T Consensus 153 -~--pnIvgiKds~gd~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 200 (297)
T 2rfg_A 153 -L--PRIVGVKDATTDLARISRERMLINKPFSFL-SGDDMTAIAYNASGGQG 200 (297)
T ss_dssp -S--TTEEEEEECSCCTTHHHHHHTTCCSCCEEE-ESCGGGHHHHHHTTCCE
T ss_pred -C--CCEEEEEeCCCCHHHHHHHHHhcCCCEEEE-eCcHHHHHHHHHCCCCE
Confidence 3 44542 55 46667777777777765553 33455678888866433
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=6.5 Score=34.80 Aligned_cols=141 Identities=14% Similarity=0.156 Sum_probs=98.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 34 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVi--aGv-------g--------------- 89 (301)
T 1xky_A 34 KTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVI--AGT-------G--------------- 89 (301)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEE--eCC-------C---------------
Confidence 6888999999999999987543 3489999999999999873 1 1111 222 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccC----CCCccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH----ADSLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~----~g~~r~d~v~~i~~ 177 (240)
..+..+.|+.++..-++|||.|++=.- | +|+. .-++..+.+.++++
T Consensus 90 -----~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 164 (301)
T 1xky_A 90 -----SNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE 164 (301)
T ss_dssp -----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHHc
Confidence 114688899999999999999998652 1 3653 23577888888863
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
. .+|+- |+ .+-.+...+++..+++..+. .-+|-+.+++|..|--|
T Consensus 165 -~--pnIvgiKdssgd~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 212 (301)
T 1xky_A 165 -I--ENIVAIKDAGGDVLTMTEIIEKTADDFAVY-SGDDGLTLPAMAVGAKG 212 (301)
T ss_dssp -S--TTEEEEEECSSCHHHHHHHHHHSCTTCEEE-ESSGGGHHHHHHTTCCE
T ss_pred -C--CCEEEEEcCCCCHHHHHHHHHhcCCCeEEE-ECcHHHHHHHHHcCCCE
Confidence 3 45543 44 46667777888888776654 33455678888876444
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=86.78 E-value=2 Score=38.18 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--------CChh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLE--------IPEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~--------l~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
++..++..+..|.+.|-|...+-+ .+.+ .-.+.|+.+++.|+.|. |+..+.
T Consensus 82 i~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~--~~~~d~--------------- 144 (293)
T 3ewb_X 82 IDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQ--FSPEDA--------------- 144 (293)
T ss_dssp HHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEE--EEEETG---------------
T ss_pred HHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEE--EEeccC---------------
Confidence 556666666789998887644332 2222 33577888899887753 444221
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
+..|++.+++.+++..++||+.| .++|..|-..+..+.++++
T Consensus 145 ---------~~~~~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~lv~ 186 (293)
T 3ewb_X 145 ---------TRSDRAFLIEAVQTAIDAGATVI-----NIPDTVGYTNPTEFGQLFQ 186 (293)
T ss_dssp ---------GGSCHHHHHHHHHHHHHTTCCEE-----EEECSSSCCCHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHcCCCEE-----EecCCCCCCCHHHHHHHHH
Confidence 01268999999999999999976 4788888888887777764
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=86.63 E-value=3.1 Score=36.62 Aligned_cols=141 Identities=11% Similarity=0.087 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 23 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g--------------- 78 (292)
T 2ojp_A 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVI--AGT-------G--------------- 78 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 5788888888899999988654 3489999999999999873 2 1111 222 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~---~g-~~r~d~v~~i~~ 177 (240)
..+..+.|+++++.-++|||.|++=.- -+|+. .| ++..+.+.++++
T Consensus 79 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 79 -----ANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAK 153 (292)
T ss_dssp -----CSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECCHHHHSCCCCHHHHHHHHT
T ss_pred -----CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcchhccCCCHHHHHHHHc
Confidence 114688899999999999999998652 13653 23 577888888863
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
. .+|+- |+ ++-.+...+++..+++..+. .-+|-+.+++|..|--|
T Consensus 154 -~--pnivgiK~s~gd~~~~~~~~~~~~~~f~v~-~G~d~~~~~~l~~G~~G 201 (292)
T 2ojp_A 154 -V--KNIIGIXEATGNLTRVNQIKELVSDDFVLL-SGDDASALDFMQYGGHG 201 (292)
T ss_dssp -S--TTEEEC-CCSCCTHHHHHHHTTSCTTSBCE-ESCGGGHHHHHHTTCCE
T ss_pred -C--CCEEEEeCCCCCHHHHHHHHHhcCCCEEEE-ECcHHHHHHHHHCCCcE
Confidence 3 44543 44 45666777777777766654 23345568888866433
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=86.60 E-value=2.9 Score=39.43 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=64.8
Q ss_pred HHHHHHcCCCEEEecCCcc--------cCC----hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccC
Q 026320 58 VEDCKQVGFDTIELNVGSL--------EIP----EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti--------~l~----~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
++.+.+.|.+.|-|...+- ..+ .+.-.+.|+.+++.|+.| +|...+..
T Consensus 116 i~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V--~~~~eda~------------------ 175 (423)
T 3ivs_A 116 ARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEV--RFSSEDSF------------------ 175 (423)
T ss_dssp HHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEE--EEEEESGG------------------
T ss_pred HHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEE--EEEEccCc------------------
Confidence 5778888999998864432 222 344456899999999886 45542210
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
..|++.+++.+++..++||+.| .++|..|-..+..+.++++.+
T Consensus 176 ------r~d~~~~~~v~~~~~~~Ga~~i-----~l~DTvG~~~P~~v~~lv~~l 218 (423)
T 3ivs_A 176 ------RSDLVDLLSLYKAVDKIGVNRV-----GIADTVGCATPRQVYDLIRTL 218 (423)
T ss_dssp ------GSCHHHHHHHHHHHHHHCCSEE-----EEEETTSCCCHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhCCCcc-----ccCCccCcCCHHHHHHHHHHH
Confidence 1268889999999999999875 478888988888888877543
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=86.49 E-value=6.1 Score=35.61 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEec
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
++++.++.++..-++|+++|-+=.
T Consensus 237 ~~~~~~~la~~L~~~Gvd~i~vs~ 260 (349)
T 3hgj_A 237 SLEDTLAFARRLKELGVDLLDCSS 260 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEec
Confidence 578888888988899999998754
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=1.6 Score=39.40 Aligned_cols=94 Identities=13% Similarity=0.040 Sum_probs=65.0
Q ss_pred HHHHHHHcCCCEEEecCCcccC------------ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 57 YVEDCKQVGFDTIELNVGSLEI------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 57 yl~~~k~lGF~~IEISdGti~l------------~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.++.+.+.|.+.|-|...+-++ ..+.-.+.|+.+++.|++|. +...+
T Consensus 101 ~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~--~~~~~------------------- 159 (337)
T 3ble_A 101 TVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYLED------------------- 159 (337)
T ss_dssp HHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEE--EEEET-------------------
T ss_pred hHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE--EEEEE-------------------
Confidence 6888888999999986533222 12455678899999998753 44421
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhc
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGR 178 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~ 178 (240)
+...+..+++.+++.+++..++||+.|. ++|..|-..+..+.++++.
T Consensus 160 --~~~~~~~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~v~~lv~~ 206 (337)
T 3ble_A 160 --WSNGFRNSPDYVKSLVEHLSKEHIERIF-----LPDTLGVLSPEETFQGVDS 206 (337)
T ss_dssp --HHHHHHHCHHHHHHHHHHHHTSCCSEEE-----EECTTCCCCHHHHHHHHHH
T ss_pred --CCCCCcCCHHHHHHHHHHHHHcCCCEEE-----EecCCCCcCHHHHHHHHHH
Confidence 0001123689999999999999998764 5777788887777766643
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=1.5 Score=42.64 Aligned_cols=139 Identities=11% Similarity=0.151 Sum_probs=87.2
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCcee--c---CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--S---TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v--~---~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+|.+-+-..++-+ +.+++-++.++++|..+ + ..+ ....++.+-+..+.+.+.|.+.|=|.|-.--+.
T Consensus 131 vd~vrIf~s~sd~---~ni~~~i~~ak~~G~~v~~~i~~~~~-----~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~ 202 (539)
T 1rqb_A 131 MDVFRVFDAMNDP---RNMAHAMAAVKKAGKHAQGTICYTIS-----PVHTVEGYVKLAGQLLDMGADSIALKDMAALLK 202 (539)
T ss_dssp CCEEEECCTTCCT---HHHHHHHHHHHHTTCEEEEEEECCCS-----TTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCC
T ss_pred CCEEEEEEehhHH---HHHHHHHHHHHHCCCeEEEEEEeeeC-----CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcC
Confidence 4555544444433 56788888888888755 1 111 111333555566667778888888888777777
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+.+-.++|+.++++ +.....+++.+ -.|...-+-.+...++|||+.| ++-
T Consensus 203 P~~v~~lv~~l~~~-~p~~i~I~~H~--------------------------Hnd~GlAvAN~laAveAGa~~V--D~ti 253 (539)
T 1rqb_A 203 PQPAYDIIKAIKDT-YGQKTQINLHC--------------------------HSTTGVTEVSLMKAIEAGVDVV--DTAI 253 (539)
T ss_dssp HHHHHHHHHHHHHH-HCTTCCEEEEE--------------------------BCTTSCHHHHHHHHHHTTCSEE--EEBC
T ss_pred HHHHHHHHHHHHHh-cCCCceEEEEe--------------------------CCCCChHHHHHHHHHHhCCCEE--EEec
Confidence 77778888888774 10011244432 1123334677788899999965 664
Q ss_pred -ccccCCCCccHHHHHHHHhccC
Q 026320 159 -DVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 159 -gi~d~~g~~r~d~v~~i~~~~~ 180 (240)
|+=...||...+.+-..+...|
T Consensus 254 ~g~GertGN~~lE~lv~~L~~~g 276 (539)
T 1rqb_A 254 SSMSLGPGHNPTESVAEMLEGTG 276 (539)
T ss_dssp GGGCSTTSBCBHHHHHHHTTTSS
T ss_pred cccCCCccChhHHHHHHHHHhcC
Confidence 7777788888877766665544
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=86.26 E-value=0.74 Score=40.92 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=42.5
Q ss_pred cCccccccChhHHHHHHHHHHhC-Ccee----cCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc
Q 026320 11 SGGSHSLMPKPFIEEVVKRAHQH-DVYV----STGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL 76 (240)
Q Consensus 11 g~GTs~l~p~~~l~eKi~l~~~~-gV~v----~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti 76 (240)
++|++.+-.++.+.+.++-.++. ++++ .+| |-+ .+.+ ++.+.+.+.|.++|-|+.++-
T Consensus 102 ~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G-~~~------~~~~-~~a~~l~~~G~d~i~v~g~~~ 164 (318)
T 1vhn_A 102 GAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLG-WEK------NEVE-EIYRILVEEGVDEVFIHTRTV 164 (318)
T ss_dssp TCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESC-SSS------CCHH-HHHHHHHHTTCCEEEEESSCT
T ss_pred CcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCC-CCh------HHHH-HHHHHHHHhCCCEEEEcCCCc
Confidence 56888888888999999988874 5443 344 311 1233 888999999999999998764
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.17 E-value=14 Score=33.16 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=83.1
Q ss_pred ChhHHHHHH-HHHH--hCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHH
Q 026320 19 PKPFIEEVV-KRAH--QHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYV 87 (240)
Q Consensus 19 p~~~l~eKi-~l~~--~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r----~~lI 87 (240)
+.+.+...+ .+++ .++|+|+. |..+|. +..|-+.||+-|=|.--.. |.++= .+++
T Consensus 62 g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e~------------i~~ai~~GFtSVMiDgS~~--p~eeNi~~Tk~vv 127 (288)
T 3q94_A 62 GFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEK------------CKEAIDAGFTSVMIDASHH--PFEENVETTKKVV 127 (288)
T ss_dssp CHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHHH------------HHHHHHHTCSEEEECCTTS--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHHH------------HHHHHHcCCCeEEEeCCCC--CHHHHHHHHHHHH
Confidence 333343433 3555 56776663 445553 4456778999999855444 44433 3678
Q ss_pred HHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec---cccccCC
Q 026320 88 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS---DDVCKHA 164 (240)
Q Consensus 88 ~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa---rgi~d~~ 164 (240)
+.++..|.-|--|+|.=-+ ++|..-. ....-.||++..+.++ +-|.|.+=+== -|.|..+
T Consensus 128 ~~ah~~gvsVEaElG~vgG------~Ed~~~~--------~~~~yT~Peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~ 190 (288)
T 3q94_A 128 EYAHARNVSVEAELGTVGG------QEDDVIA--------EGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGE 190 (288)
T ss_dssp HHHHTTTCEEEEEESBCBC------SCSSCGG--------GGCBCCCHHHHHHHHH---HHCCSEEEECSSCBSSCCSSS
T ss_pred HHHHHcCCeEEEEeeeecc------ccCCcCC--------ccccCCCHHHHHHHHH---HHCCCEEEEEcCcccCCcCCC
Confidence 8888999999999998321 2221000 0001136777777666 57888765532 2899888
Q ss_pred CCccHHHHHHHHhccCC
Q 026320 165 DSLRADIIAKVIGRLGL 181 (240)
Q Consensus 165 g~~r~d~v~~i~~~~~~ 181 (240)
-.++.|.+++|-+.++.
T Consensus 191 p~Ld~~~L~~I~~~v~v 207 (288)
T 3q94_A 191 PNLGFAEMEQVRDFTGV 207 (288)
T ss_dssp CCCCHHHHHHHHHHHCS
T ss_pred CccCHHHHHHHHHhcCC
Confidence 88999999999887753
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=86.15 E-value=5.5 Score=35.32 Aligned_cols=143 Identities=10% Similarity=0.128 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 33 ~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVi--aGv-------g-------------- 89 (306)
T 1o5k_A 33 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVI--VGA-------G-------------- 89 (306)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEE--EcC-------C--------------
Confidence 36888999999999999987654 3489999999999999873 1 1111 222 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccC---CC-CccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH---AD-SLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~---~g-~~r~d~v~~i~ 176 (240)
..+..+.|++++..-++|||.|++=.- | +|+. .| ++..+.+.+++
T Consensus 90 ------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La 163 (306)
T 1o5k_A 90 ------TNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIA 163 (306)
T ss_dssp ------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ------CccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHH
Confidence 114688899999999999999998652 1 3653 23 67788888887
Q ss_pred hccCCCceEE--ec-CCchhHHHHHHHhCC---CcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKTMF--EA-TNPRTSEWFIRRYGP---KVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~lif--EA-P~k~qQ~~~I~~fG~---~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
++. .+|+- |+ ++-.+...+++..++ ++.+. .-+|-+.+++|..|--|
T Consensus 164 ~~~--pnIvgiKdssgd~~~~~~~~~~~~~~~~~f~v~-~G~d~~~l~~l~~G~~G 216 (306)
T 1o5k_A 164 ADL--KNVVGIXEANPDIDQIDRTVSLTKQARSDFMVW-SGNDDRTFYLLCAGGDG 216 (306)
T ss_dssp HHC--TTEEEEEECCCCHHHHHHHHHHHHHHCTTCEEE-ESSGGGHHHHHHHTCCE
T ss_pred HhC--CCEEEEeCCCCCHHHHHHHHHhcCCCCCcEEEE-ECcHHHHHHHHHCCCCE
Confidence 344 34442 44 566677778877765 65553 33455678888866433
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=86.12 E-value=3.4 Score=35.20 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
+++++.+.++..+++||+.|++ ++.++.+.. . ...+.++.+
T Consensus 215 ~~~~~~~~~~~~~~~Ga~gv~v-g~~i~~~~~-~-~~~~~~l~~ 255 (273)
T 2qjg_A 215 TDEEFLQMIKDAMEAGAAGVAV-GRNIFQHDD-V-VGITRAVCK 255 (273)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEC-CHHHHTSSS-H-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEe-eHHhhCCCC-H-HHHHHHHHH
Confidence 3688888899999999999999 888887642 2 334444443
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=86.05 E-value=7 Score=34.26 Aligned_cols=140 Identities=14% Similarity=0.118 Sum_probs=95.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 22 ~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi--aGv-------g--------------- 77 (289)
T 2yxg_A 22 GLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVI--AGA-------G--------------- 77 (289)
T ss_dssp HHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C---------------
Confidence 6788899999999999988543 3479999999999999873 2 1111 222 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccC----CCCccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH----ADSLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~----~g~~r~d~v~~i~~ 177 (240)
..+..+.++.+++.-++|||-|++=.- | +|+. .-++..+.+.++++
T Consensus 78 -----~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~ 152 (289)
T 2yxg_A 78 -----SNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAE 152 (289)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHH
Confidence 114688899999999999999998652 1 3653 23577888888873
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+. .+++- |+ ++-.+...+++.. +..+ ..-+|-+.+++|..|--|
T Consensus 153 ~~--pnivgiK~s~gd~~~~~~~~~~~--~f~v-~~G~d~~~~~~l~~G~~G 199 (289)
T 2yxg_A 153 EY--SNISAVKEANPNLSQVSELIHDA--KITV-LSGNDELTLPIIALGGKG 199 (289)
T ss_dssp HC--TTEEEEEECCSCTHHHHHHHHHT--CSEE-EESCGGGHHHHHHTTCCE
T ss_pred hC--CCEEEEEeCCCCHHHHHHHHHhC--CeEE-EECcHHHHHHHHHCCCCE
Confidence 44 34432 55 4566666777765 3333 444566678888876434
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=86.03 E-value=5.4 Score=36.20 Aligned_cols=140 Identities=11% Similarity=0.101 Sum_probs=98.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 53 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGv-------g--------------- 108 (343)
T 2v9d_A 53 GTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVL--IGT-------G--------------- 108 (343)
T ss_dssp HHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 68888999999999999886543 479999999999999873 1 1111 222 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------c-----------------cccC---CC-CccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D-----------------VCKH---AD-SLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g-----------------i~d~---~g-~~r~d~v~~i~~ 177 (240)
..+..+.|+.++..-++|||.|++=.- | +|+. .| ++..+.+.++++
T Consensus 109 -----~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~ 183 (343)
T 2v9d_A 109 -----GTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLAD 183 (343)
T ss_dssp -----SSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHH
Confidence 114688899999999999999998652 1 3653 23 678889998873
Q ss_pred ccCCCceEE--ec-CCchhHHHHHHHhC---CCcccccCCCCchhhhhhhCcc
Q 026320 178 RLGLEKTMF--EA-TNPRTSEWFIRRYG---PKVNLFVDHSQVMDLECLRGRN 224 (240)
Q Consensus 178 ~~~~~~lif--EA-P~k~qQ~~~I~~fG---~~VNLgI~~~dVl~LE~LR~~~ 224 (240)
+. .+|+- |+ ++-.+...+++..+ +++.+. .-+|-+.+++|..|-
T Consensus 184 ~~--pnIvgiKdssgd~~~~~~l~~~~~~~~~~f~v~-~G~D~~~l~~l~~Ga 233 (343)
T 2v9d_A 184 SR--SNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVL-CGYDDHLFNTLLLGG 233 (343)
T ss_dssp HC--TTEEEEEECCSCHHHHHHHHHHHHHHCTTCEEE-ESSGGGHHHHHHTTC
T ss_pred hC--CCEEEEEeCCCCHHHHHHHHHhcCCCCCCEEEE-ECcHHHHHHHHHCCC
Confidence 44 34432 55 45667777888887 666654 334556788888764
|
| >4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ... | Back alignment and structure |
|---|
Probab=85.59 E-value=0.6 Score=42.29 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCEEEecC----------------Cccc----C-----ChhHHHHHHHHHHHcCCcccceeee
Q 026320 55 KEYVEDCKQVGFDTIELNV----------------GSLE----I-----PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISd----------------Gti~----l-----~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
++..++++++||++|+||= |.-. + +.++..+||+.++++|++|+-.+-.
T Consensus 26 ~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~VilD~V~ 99 (496)
T 4gqr_A 26 LECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIYVDAVI 99 (496)
T ss_dssp HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 4556678899999999983 2111 1 3678999999999999999876654
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.36 E-value=3.6 Score=37.11 Aligned_cols=141 Identities=9% Similarity=0.084 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ +|+ |
T Consensus 56 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGv-------g--------------- 111 (332)
T 2r8w_A 56 AFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLM--AGI-------G--------------- 111 (332)
T ss_dssp HHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEE--EEE-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--Eec-------C---------------
Confidence 6888899999999999988654 3489999999999999874 1 1111 133 0
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC---CC-CccHHHHHHHHh
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH---AD-SLRADIIAKVIG 177 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~---~g-~~r~d~v~~i~~ 177 (240)
..+..+.|+.++..-++|||-|++=.- -+|+. .| ++..+.+.++++
T Consensus 112 -----~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~ 186 (332)
T 2r8w_A 112 -----ALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLAY 186 (332)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred -----CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHc
Confidence 114688899999999999999998652 13653 23 577888888864
Q ss_pred ccCCCceEE--ec-CC----chhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 178 RLGLEKTMF--EA-TN----PRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 178 ~~~~~~lif--EA-P~----k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
..+|+- |+ ++ -.+...+++..++++.++-- +|-+.+++|..|--|
T Consensus 187 ---~pnIvgiKdssgd~~~~~~~~~~l~~~~~~~f~v~~G-~D~~~l~~l~~G~~G 238 (332)
T 2r8w_A 187 ---IPNIRAIKMPLPADADYAGELARLRPKLSDDFAIGYS-GDWGCTDATLAGGDT 238 (332)
T ss_dssp ---STTEEEEEECCCTTCCHHHHHHHHTTTSCTTCEEEEC-CHHHHHHHHHTTCSE
T ss_pred ---CCCEEEEEeCCCCchhHHHHHHHHHHhcCCCEEEEeC-chHHHHHHHHCCCCE
Confidence 345542 45 34 45566677777776666533 344668888866433
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.26 E-value=4.3 Score=36.14 Aligned_cols=147 Identities=10% Similarity=0.056 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- . .+-+--+ +|
T Consensus 30 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~-g---rvpViaG---vg------------------ 84 (313)
T 3dz1_A 30 SIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRA-K---SMQVIVG---VS------------------ 84 (313)
T ss_dssp HHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHC-T---TSEEEEE---CC------------------
T ss_pred HHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHc-C---CCcEEEe---cC------------------
Confidence 67888899999999999554333 3699999999999998852 1 1111110 11
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecc--------------------c------cccC----CCCccHHHHHHHHhcc
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSD--------------------D------VCKH----ADSLRADIIAKVIGRL 179 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------------------g------i~d~----~g~~r~d~v~~i~~~~ 179 (240)
..+..+.|+.+++.-++||+.|++=.- + +|+. .-++..+.+.++.+..
T Consensus 85 --~~~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~~~ 162 (313)
T 3dz1_A 85 --APGFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVMDS 162 (313)
T ss_dssp --CSSHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHHhC
Confidence 114688899999999999999998431 2 2442 2256666777766444
Q ss_pred C-CCceEEec-CCchhHHHHHHHhC----CCcccccCCCCchhhhhhhCccCC
Q 026320 180 G-LEKTMFEA-TNPRTSEWFIRRYG----PKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~-~~~lifEA-P~k~qQ~~~I~~fG----~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
| +-=+=.++ ++-.+...+++..+ ++..+.--.++.+-..+|..|--|
T Consensus 163 pnIvgiKd~~~~~~~~~~~~~~~~~~~~~~~f~v~~G~d~~~l~~~l~~G~~G 215 (313)
T 3dz1_A 163 ASCVMLKHEDWPGLEKITTLRGFQKDGSLRPLSILCGNGGLFLDFEMERGADG 215 (313)
T ss_dssp SSEEEEEECCSSCHHHHHHHHHHHHHTSSCCCEEEECGGGTTHHHHHHHTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHhcCccCCCCeEEEeCCcHHHHHHHHHCCCcE
Confidence 3 11111243 34455556666665 555554333332222245544333
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=2.9 Score=36.51 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCCC-EEEecCCc------ccC--ChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccc
Q 026320 53 AFKEYVEDCKQVGFD-TIELNVGS------LEI--PEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVA 123 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~-~IEISdGt------i~l--~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~ 123 (240)
.+.+..+.+.+.||| +|||+=++ -.+ +.+...++++.+++.= -+| +.+|-.
T Consensus 107 ~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~--~~P-v~vKi~----------------- 166 (311)
T 1jub_A 107 ENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF--TKP-LGVKLP----------------- 166 (311)
T ss_dssp HHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC--CSC-EEEEEC-----------------
T ss_pred HHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc--CCC-EEEEEC-----------------
Confidence 455556666788999 99997542 112 5566678888888751 122 344421
Q ss_pred cCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 124 RAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 124 ~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
|. | |.+++.+.++...++||+.|++-.+
T Consensus 167 ~~-~------~~~~~~~~a~~~~~~G~d~i~v~~~ 194 (311)
T 1jub_A 167 PY-F------DLVHFDIMAEILNQFPLTYVNSVNS 194 (311)
T ss_dssp CC-C------SHHHHHHHHHHHTTSCCCEEEECCC
T ss_pred CC-C------CHHHHHHHHHHHHHcCCcEEEecCC
Confidence 10 1 3567778888999999999998765
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=84.58 E-value=3.2 Score=36.09 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=90.4
Q ss_pred ccccccChhHHHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH
Q 026320 13 GSHSLMPKPFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK 91 (240)
Q Consensus 13 GTs~l~p~~~l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~ 91 (240)
||--+|=++...+.++..++++| .|.-+.= ++...+..+.|-+-|+++|||.-- ...-.+.|+.++
T Consensus 14 ~~~~~~~~~~m~~~~~~l~~~~vv~Vir~~~--------~~~a~~~a~al~~gGi~~iEvt~~-----t~~a~e~I~~l~ 80 (232)
T 4e38_A 14 GTENLYFQSMMSTINNQLKALKVIPVIAIDN--------AEDIIPLGKVLAENGLPAAEITFR-----SDAAVEAIRLLR 80 (232)
T ss_dssp ------CCCCHHHHHHHHHHHCEEEEECCSS--------GGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhCCEEEEEEcCC--------HHHHHHHHHHHHHCCCCEEEEeCC-----CCCHHHHHHHHH
Confidence 55556656677777888888888 5544521 234556667788889999999433 334467888887
Q ss_pred HcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-----------cc
Q 026320 92 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------DV 160 (240)
Q Consensus 92 ~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-----------gi 160 (240)
+. .++.-+ |+ |..++ .++++..++|||+.|+.=+- |+
T Consensus 81 ~~----~~~~~i-------Ga------GTVlt---------------~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi 128 (232)
T 4e38_A 81 QA----QPEMLI-------GA------GTILN---------------GEQALAAKEAGATFVVSPGFNPNTVRACQEIGI 128 (232)
T ss_dssp HH----CTTCEE-------EE------ECCCS---------------HHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTC
T ss_pred Hh----CCCCEE-------eE------CCcCC---------------HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCC
Confidence 73 122222 10 11112 68899999999999985431 22
Q ss_pred ccCCCCccHHHHHHHHhccCCCceEEecCCchh-HHHHHHHh-C--CCccc---c-cCCCCchhhhhhhCccC
Q 026320 161 CKHADSLRADIIAKVIGRLGLEKTMFEATNPRT-SEWFIRRY-G--PKVNL---F-VDHSQVMDLECLRGRNL 225 (240)
Q Consensus 161 ~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~q-Q~~~I~~f-G--~~VNL---g-I~~~dVl~LE~LR~~~~ 225 (240)
--=-|-...+++.+-+ +.|.+-+-+ =|-..+ =..||+.+ | |++.+ | |.++++- |.|..|..
T Consensus 129 ~~ipGv~TptEi~~A~-~~Gad~vK~-FPa~~~gG~~~lkal~~p~p~ip~~ptGGI~~~n~~--~~l~aGa~ 197 (232)
T 4e38_A 129 DIVPGVNNPSTVEAAL-EMGLTTLKF-FPAEASGGISMVKSLVGPYGDIRLMPTGGITPSNID--NYLAIPQV 197 (232)
T ss_dssp EEECEECSHHHHHHHH-HTTCCEEEE-CSTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHH--HHHTSTTB
T ss_pred CEEcCCCCHHHHHHHH-HcCCCEEEE-CcCccccCHHHHHHHHHHhcCCCeeeEcCCCHHHHH--HHHHCCCe
Confidence 1101222444444333 467766665 332222 13566654 3 36776 5 8877653 44554443
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=84.28 E-value=5.6 Score=35.02 Aligned_cols=142 Identities=14% Similarity=0.086 Sum_probs=92.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~ 125 (240)
+.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 23 ~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvi--aGv-------g-------------- 79 (292)
T 3daq_A 23 EALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVI--AGT-------G-------------- 79 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEE--EEC-------C--------------
T ss_pred HHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C--------------
Confidence 378889999999999999665333 378999999999999883 1 1111 122 1
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~ 176 (240)
..+..+.++.+++.-++|||.|++=.- -+|+. .-++..+.+.++.
T Consensus 80 ------~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La 153 (292)
T 3daq_A 80 ------TNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILS 153 (292)
T ss_dssp ------CSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHh
Confidence 114688899999999999999998762 13553 2456677777776
Q ss_pred hccCCCceE--EecC-CchhHHHHHHHhCC-CcccccCCCCchhhhhhhCccCC
Q 026320 177 GRLGLEKTM--FEAT-NPRTSEWFIRRYGP-KVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 177 ~~~~~~~li--fEAP-~k~qQ~~~I~~fG~-~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+ .| +++ =++. +-.+...++++.++ +..+.- -.|-+-+++|..|--|
T Consensus 154 ~-~p--nivgiK~ssgd~~~~~~~~~~~~~~~f~v~~-G~d~~~~~~l~~G~~G 203 (292)
T 3daq_A 154 Q-HP--YIVALKDATNDFEYLEEVKKRIDTNSFALYS-GNDDNVVEYYQRGGQG 203 (292)
T ss_dssp T-ST--TEEEEEECCCCHHHHHHHHTTSCTTTSEEEE-SCGGGHHHHHHTTCCE
T ss_pred c-CC--CEEEEEeCCCCHHHHHHHHHHCCCCCEEEEE-CCHHHHHHHHhcCCCE
Confidence 4 33 332 2443 45556666666665 555543 3344467777766433
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=2.2 Score=35.39 Aligned_cols=48 Identities=4% Similarity=-0.081 Sum_probs=33.0
Q ss_pred HHHHHhC-CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 026320 27 VKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 74 (240)
Q Consensus 27 i~l~~~~-gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG 74 (240)
++.++++ ||.+.|.|-.+....+-.+.++..+..+.+.||+.+-++..
T Consensus 93 i~~~~~~~gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~ 141 (208)
T 2czd_A 93 VMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGT 141 (208)
T ss_dssp HHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCS
T ss_pred HHHHHHhCCcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCC
Confidence 6666666 88888775332221100237999999999999999988854
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=84.02 E-value=2.1 Score=37.76 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
.+.++-+.+++.|.+.|=.| |.+ .+.||.....+|. |-| |+....+..
T Consensus 145 ~v~~~A~~a~~~G~dGvV~s------~~e--~~~ir~~~~~~f~~vtP--GIr~~g~~~--------------------- 193 (259)
T 3tfx_A 145 QVLSLAKMAKHSGADGVICS------PLE--VKKLHENIGDDFLYVTP--GIRPAGNAK--------------------- 193 (259)
T ss_dssp HHHHHHHHHHHTTCCEEECC------GGG--HHHHHHHHCSSSEEEEC--CCCCC-------------------------
T ss_pred HHHHHHHHHHHhCCCEEEEC------HHH--HHHHHhhcCCccEEEcC--CcCCCCCCc---------------------
Confidence 34466677788898877665 332 4677877766665 345 442111111
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
+-+.++-.+...++|||+++++ ||+||..... ...+++|.+.+
T Consensus 194 --gDQ~Rv~T~~~a~~aGad~iVv-Gr~I~~a~dp--~~a~~~i~~~~ 236 (259)
T 3tfx_A 194 --DDQSRVATPKMAKEWGSSAIVV-GRPITLASDP--KAAYEAIKKEF 236 (259)
T ss_dssp ---------CHHHHHHTTCSEEEE-CHHHHTSSSH--HHHHHHHHHHH
T ss_pred --CCccccCCHHHHHHcCCCEEEE-ChHHhCCCCH--HHHHHHHHHHH
Confidence 1255677778889999997665 7999998753 34555555443
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=83.99 E-value=6 Score=35.09 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=100.5
Q ss_pred CCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc--C-CcccceeeeecC
Q 026320 33 HDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFN 106 (240)
Q Consensus 33 ~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~ 106 (240)
.||.+..=|.|--=-.=+.+.+.++++++-+-|.+.|=+.-. +..|+.++|.++++.+.+. | ..|+ .|+
T Consensus 18 ~Gv~~a~vTPf~~dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv--- 92 (304)
T 3cpr_A 18 GTVGVAMVTPFTESGDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLI--AGV--- 92 (304)
T ss_dssp CSEEEECCCCBCTTSCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEE--EEC---
T ss_pred CceEEeeeccCCCCCCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--ecC---
Confidence 577655445431000011236888899999999999877543 3489999999999999873 2 1121 222
Q ss_pred CCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccc
Q 026320 107 KSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVC 161 (240)
Q Consensus 107 ~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~ 161 (240)
| ..+..+.|+.+++.-++|||.|++=.- -+|
T Consensus 93 ----g--------------------~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 148 (304)
T 3cpr_A 93 ----G--------------------TNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLY 148 (304)
T ss_dssp ----C--------------------CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred ----C--------------------CCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 114688899999999999999998652 136
Q ss_pred cC----CCCccHHHHHHHHhccCCCceEE--ec-CCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 162 KH----ADSLRADIIAKVIGRLGLEKTMF--EA-TNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 162 d~----~g~~r~d~v~~i~~~~~~~~lif--EA-P~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+. .-++..+.+.++++ ..+|+- |+ ++-.+...+++.. +..+ ..-+|-+.+++|..|--|
T Consensus 149 n~P~~tg~~l~~~~~~~La~---~pnIvgiKdssgd~~~~~~~~~~~--~f~v-~~G~d~~~l~~l~~G~~G 214 (304)
T 3cpr_A 149 DIPGRSGIPIESDTMRRLSE---LPTILAVXDAKGDLVAATSLIKET--GLAW-YSGDDPLNLVWLALGGSG 214 (304)
T ss_dssp ECHHHHSSCCCHHHHHHHTT---STTEEEEEECSCCHHHHHHHHHHH--CCEE-EECSGGGHHHHHHTTCCE
T ss_pred eCccccCcCCCHHHHHHHHc---CCCEEEEecCCCCHHHHHHHHHhc--CEEE-EECcHHHHHHHHHCCCCE
Confidence 53 23567788887763 345543 44 4556666677665 3333 444555678888866433
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=83.94 E-value=5.6 Score=36.50 Aligned_cols=122 Identities=17% Similarity=0.116 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhCC--ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc-CCcc
Q 026320 21 PFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKA 97 (240)
Q Consensus 21 ~~l~eKi~l~~~~g--V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~-G~~v 97 (240)
+.+++-++.++++| +.+... +|-+...+++.+-+..+.+.+. .+.|=+.|-.--+.+.+-.++|+.+++. | +
T Consensus 114 ~~~~~~v~~ak~~g~~~~v~~~--~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~--~ 188 (382)
T 2ztj_A 114 EEAKEVIAYIREAAPHVEVRFS--AEDTFRSEEQDLLAVYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVG--P 188 (382)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEE--ETTTTTSCHHHHHHHHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHHHcCCCEEEEEE--EEeCCCCCHHHHHHHHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcC--C
Confidence 45778889999999 765532 1223344455677777888889 9999998888788888888999998874 1 1
Q ss_pred cceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH
Q 026320 98 KPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 173 (240)
Q Consensus 98 ~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~ 173 (240)
...+++.+. . |....+-.+...++|||+.|=.=-.|+=...||...+.+-
T Consensus 189 ~~~i~~H~H-n-------------------------d~GlAvAN~laAv~aGa~~vd~tv~GlGeraGN~~lE~vv 238 (382)
T 2ztj_A 189 RVDIEFHGH-N-------------------------DTGCAIANAYEAIEAGATHVDTTILGIGERNGITPLGGFL 238 (382)
T ss_dssp TSEEEEEEB-C-------------------------TTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHH
T ss_pred CCeEEEEeC-C-------------------------CccHHHHHHHHHHHhCCCEEEEccccccccccchhHHHHH
Confidence 223555431 1 1223366777889999996544445888899999887664
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=83.91 E-value=3.6 Score=37.21 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=70.6
Q ss_pred cccChhHHHHHHHHHHhCC-------cee--cCC--cHHHHHHHhCC--chHHHHHHHHHHcCCCEEEecCCcccCChhH
Q 026320 16 SLMPKPFIEEVVKRAHQHD-------VYV--STG--DWAEHLIRNGP--SAFKEYVEDCKQVGFDTIELNVGSLEIPEET 82 (240)
Q Consensus 16 ~l~p~~~l~eKi~l~~~~g-------V~v--~~G--tl~E~a~~qg~--~~~~~yl~~~k~lGF~~IEISdGti~l~~~~ 82 (240)
+...++.++.-++.+++++ |.+ +++ .|-|. .+++ +.+.++-+.+++.|.+.|-.| +.+
T Consensus 111 a~~G~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l--~~~~~~e~V~~lA~~a~~~G~dGvV~s------~~E- 181 (303)
T 3ru6_A 111 ASAGKIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSI--YRQKIEEAVINFSKISYENGLDGMVCS------VFE- 181 (303)
T ss_dssp GGGCHHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHH--HSSCHHHHHHHHHHHHHHTTCSEEECC------TTT-
T ss_pred ccCCHHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHH--HcCCHHHHHHHHHHHHHHcCCCEEEEC------HHH-
Confidence 3455677888888888776 222 333 46554 3330 123445567788998876553 222
Q ss_pred HHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccc
Q 026320 83 LLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVC 161 (240)
Q Consensus 83 r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~ 161 (240)
...||.....+|. |-| |+....+. . +-+.++..+...++|||+.+++ ||+||
T Consensus 182 -~~~IR~~~~~~fl~VTP--GIr~qG~~---~--------------------~DQ~Rv~t~~~a~~aGAd~iVv-Gr~I~ 234 (303)
T 3ru6_A 182 -SKKIKEHTSSNFLTLTP--GIRPFGET---N--------------------DDQKRVANLAMARENLSDYIVV-GRPIY 234 (303)
T ss_dssp -HHHHHHHSCTTSEEEEC--CCCTTC-------------------------------CCSHHHHHHTTCSEEEE-CHHHH
T ss_pred -HHHHHHhCCCccEEECC--CcCcccCC---c--------------------ccccccCCHHHHHHcCCCEEEE-ChHHh
Confidence 3566665555553 345 33211111 1 1244455666778999997655 89999
Q ss_pred cCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 162 KHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 162 d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
..... ...+++|.+.+.- |=||++.
T Consensus 235 ~a~dp--~~a~~~i~~~i~~-~~~~~~~ 259 (303)
T 3ru6_A 235 KNENP--RAVCEKILNKIHR-KNISEND 259 (303)
T ss_dssp TSSCH--HHHHHHHHHHHC---------
T ss_pred CCCCH--HHHHHHHHHHHHh-ccccccc
Confidence 98753 3456666665553 2344443
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=83.79 E-value=9.4 Score=34.10 Aligned_cols=76 Identities=11% Similarity=0.135 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcC---CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAG---LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---~l~~~~r~~lI~~~~~~G---~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.+.++++++-+-|.+.|=+.-.|- .|+.++|.++++.+.+.- ..|+ .|+ |
T Consensus 33 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpvi--aGv-------g--------------- 88 (318)
T 3qfe_A 33 SQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIM--AGV-------G--------------- 88 (318)
T ss_dssp HHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEE--EeC-------C---------------
Confidence 688889999999999997764433 699999999999998841 1111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..+..+.|+.+++.-++|||.|++=.
T Consensus 89 -----~~~t~~ai~la~~a~~~Gadavlv~~ 114 (318)
T 3qfe_A 89 -----AHSTRQVLEHINDASVAGANYVLVLP 114 (318)
T ss_dssp -----CSSHHHHHHHHHHHHHHTCSEEEECC
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11468889999999999999999854
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=83.69 E-value=4.4 Score=33.29 Aligned_cols=90 Identities=16% Similarity=0.190 Sum_probs=54.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc--CCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
.++++.+.+.|.+.|.+......=|.+...++++.+++. |+.+. +..
T Consensus 78 ~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~----~~~--------------------------- 126 (223)
T 1y0e_A 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIM----ADI--------------------------- 126 (223)
T ss_dssp HHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEE----EEC---------------------------
T ss_pred HHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEE----ecC---------------------------
Confidence 467888899999999987554332223456788888887 65542 210
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCC-----CCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHA-----DSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~-----g~~r~d~v~~i~~~~ 179 (240)
.+++ .+++..++||++|++-..|.++.. ....-+.+.++.+.+
T Consensus 127 ~t~~----e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~ 174 (223)
T 1y0e_A 127 ATVE----EAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSV 174 (223)
T ss_dssp SSHH----HHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHC
T ss_pred CCHH----HHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhC
Confidence 0223 345567999999998665543321 112234566665544
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=82.96 E-value=9.8 Score=40.02 Aligned_cols=102 Identities=14% Similarity=0.234 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
++++++.+.+.|.+.|-|.+..=++... ..+++.+++.|..+. ..+..-...+++.+. ...
T Consensus 629 ~~~~v~~a~~~Gvd~irif~~~sd~~~~--~~~~~~~~e~g~~~~--~~i~~~~~~~~pe~~---------------~~~ 689 (1150)
T 3hbl_A 629 IHKFVQESAKAGIDVFRIFDSLNWVDQM--KVANEAVQEAGKISE--GTICYTGDILNPERS---------------NIY 689 (1150)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTCCGGGG--HHHHHHHHHTTCEEE--EEEECCSCTTCTTTC---------------SSS
T ss_pred HHHHHHHHHhCCcCEEEEEeeCCHHHHH--HHHHHHHHHHhhhee--EEEeecccccChhhc---------------CCC
Confidence 6778888999999999998877766443 468888888885543 222211112221111 123
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
|++.+++.+++-.++||+.| .|+|..|-..+..+.++++.+
T Consensus 690 ~~~~~~~~a~~~~~~Ga~~i-----~l~Dt~G~~~P~~~~~lv~~l 730 (1150)
T 3hbl_A 690 TLEYYVKLAKELEREGFHIL-----AIKDMAGLLKPKAAYELIGEL 730 (1150)
T ss_dssp SHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCee-----eEcCccCCCCHHHHHHHHHHH
Confidence 68999999999999999865 468888888888887777543
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=82.91 E-value=4.4 Score=36.46 Aligned_cols=117 Identities=19% Similarity=0.262 Sum_probs=74.3
Q ss_pred HHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHc
Q 026320 28 KRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSA 93 (240)
Q Consensus 28 ~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-----------~l~~~~r~~lI~~~~~~ 93 (240)
.+++..++++.- + ||- ++..+-+-.+...+.|..+|-|=|+.. -+|.++-.+-|+.+++.
T Consensus 77 ~I~r~~~~PviaD~d~Gyg------~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A 150 (298)
T 3eoo_A 77 RITNATNLPLLVDIDTGWG------GAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDA 150 (298)
T ss_dssp HHHHHCCSCEEEECTTCSS------SHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHH
T ss_pred HHHhhcCCeEEEECCCCCC------CHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHh
Confidence 355666776542 1 231 222333445556678999999999874 36788777777777664
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHH
Q 026320 94 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIA 173 (240)
Q Consensus 94 G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~ 173 (240)
-- -+.|-+.- .-|. + .....++.|++++...+||||.|.+|+. -..+.+.
T Consensus 151 ~~--~~~~~I~A-------RTDa-~------------~~~gldeai~Ra~ay~~AGAD~if~~~~--------~~~ee~~ 200 (298)
T 3eoo_A 151 RT--DETFVIMA-------RTDA-A------------AAEGIDAAIERAIAYVEAGADMIFPEAM--------KTLDDYR 200 (298)
T ss_dssp CS--STTSEEEE-------EECT-H------------HHHHHHHHHHHHHHHHHTTCSEEEECCC--------CSHHHHH
T ss_pred cc--CCCeEEEE-------eehh-h------------hhcCHHHHHHHHHhhHhcCCCEEEeCCC--------CCHHHHH
Confidence 11 13344421 1121 0 1224789999999999999999999985 1477788
Q ss_pred HHHhccC
Q 026320 174 KVIGRLG 180 (240)
Q Consensus 174 ~i~~~~~ 180 (240)
++.+.++
T Consensus 201 ~~~~~~~ 207 (298)
T 3eoo_A 201 RFKEAVK 207 (298)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 8887775
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=2.3 Score=38.41 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHc---CCcccceeeeecCCCCCCCccccccccccccCCCCccc
Q 026320 55 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA---GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEY 131 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~---G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~ 131 (240)
..|-.....+|+..|=+.-+. ...-.++|+++++. ...+.--+|+.
T Consensus 189 ~aYa~~gad~G~~lV~LD~~~----~~v~~e~V~~I~~~~~~~iPV~vGGGIr--------------------------- 237 (286)
T 3vk5_A 189 DRYLHVARAFGFHMVYLYSRN----EHVPPEVVRHFRKGLGPDQVLFVSGNVR--------------------------- 237 (286)
T ss_dssp HHHHHHHHHTTCSEEEEECSS----SCCCHHHHHHHHHHSCTTCEEEEESSCC---------------------------
T ss_pred HHHHHHHHHcCCCEEEEcCCC----CcCCHHHHHHHHHhcCCCCCEEEEeCCC---------------------------
Confidence 789999999999999888555 22223677777764 23333333331
Q ss_pred ccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 132 VEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 132 ~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
| .+++++.+++|||.|+|=+- ++++. -.+++.+++.+.+
T Consensus 238 --s----~Eda~~ll~aGAD~VVVGSA-av~d~---~Pelv~e~a~~~~ 276 (286)
T 3vk5_A 238 --S----GRQVTEYLDSGADYVGFAGA-LEQPD---WRSALAEIAGRRP 276 (286)
T ss_dssp --S----HHHHHHHHHTTCSEEEESGG-GSSTT---HHHHHHHHHC---
T ss_pred --C----HHHHHHHHHcCCCEEEECch-hhcCC---CHHHHHHHHHhCC
Confidence 2 67888889999999999554 33322 2477888876553
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=82.45 E-value=13 Score=33.43 Aligned_cols=83 Identities=22% Similarity=0.292 Sum_probs=48.0
Q ss_pred HHHHH---HHHHHcCCCEEEecCCc--c------c----------CChhHHH----HHHHHHHHcCCcccceeeeecCCC
Q 026320 54 FKEYV---EDCKQVGFDTIELNVGS--L------E----------IPEETLL----RYVRLVKSAGLKAKPKFAVMFNKS 108 (240)
Q Consensus 54 ~~~yl---~~~k~lGF~~IEISdGt--i------~----------l~~~~r~----~lI~~~~~~G~~v~~E~g~k~~~~ 108 (240)
+++|. +.|++.|||.|||.-+. + + =+.+.|. ++|+.+++.= ..-+++|....
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v---~~pv~vRls~~ 219 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW---DGPLFVRISAS 219 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEESC
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc---CCceEEEeccc
Confidence 44554 45678899999998552 0 1 1234454 5556665531 11256664322
Q ss_pred CCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 109 DIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 109 evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+.. +..| +.++.++.++..-++|+++|-+=.
T Consensus 220 ~~~------------~~g~------~~~~~~~la~~L~~~Gvd~i~vs~ 250 (340)
T 3gr7_A 220 DYH------------PDGL------TAKDYVPYAKRMKEQGVDLVDVSS 250 (340)
T ss_dssp CCS------------TTSC------CGGGHHHHHHHHHHTTCCEEEEEC
T ss_pred ccc------------CCCC------CHHHHHHHHHHHHHcCCCEEEEec
Confidence 110 0112 356677788888899999998843
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=82.34 E-value=7.3 Score=35.91 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc--C-CcccceeeeecCCCCCCCccccccccccccCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA--G-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 126 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~--G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~ 126 (240)
.++++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+. | ..|+ .|+ |
T Consensus 81 al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVi--aGv-------g--------------- 136 (360)
T 4dpp_A 81 AYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVI--GNT-------G--------------- 136 (360)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEE--EEC-------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEE--Eec-------C---------------
Confidence 68888999999999999884322 489999999999998873 1 1111 122 1
Q ss_pred CCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 127 RSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 127 ~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
..+..+.|+.++..-++||+-|++=.
T Consensus 137 -----~~st~eai~la~~A~~~Gadavlvv~ 162 (360)
T 4dpp_A 137 -----SNSTREAIHATEQGFAVGMHAALHIN 162 (360)
T ss_dssp -----CSSHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred -----CCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11468889999999999999999865
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=82.30 E-value=8.5 Score=33.65 Aligned_cols=97 Identities=12% Similarity=0.105 Sum_probs=63.4
Q ss_pred HcCCCEEEecCCc-----ccCChhHHHHHHHHHHHc----CCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 63 QVGFDTIELNVGS-----LEIPEETLLRYVRLVKSA----GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 63 ~lGF~~IEISdGt-----i~l~~~~r~~lI~~~~~~----G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
+.|..+|-|=||. --+|.++.++-|+.+++. |.. |-+.- ..|. + +. ... ....
T Consensus 104 ~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~----~~v~a-------Rtd~-~---~~--g~~-~~~~ 165 (255)
T 2qiw_A 104 EAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVD----VVING-------RTDA-V---KL--GAD-VFED 165 (255)
T ss_dssp HTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCC----CEEEE-------EECH-H---HH--CTT-TSSS
T ss_pred HcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCC----eEEEE-------Eech-h---hc--cCC-cchH
Confidence 4899999999986 235667788888888776 643 22311 0010 0 00 000 0001
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC-CCceE
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG-LEKTM 185 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~-~~~li 185 (240)
..++.|++++...+|||+.|.+|+- ...+++.+|.+.++ +-+++
T Consensus 166 ~~~~ai~ra~a~~eAGAd~i~~e~~--------~~~~~~~~i~~~~~~P~n~~ 210 (255)
T 2qiw_A 166 PMVEAIKRIKLMEQAGARSVYPVGL--------STAEQVERLVDAVSVPVNIT 210 (255)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCC--------CSHHHHHHHHTTCSSCBEEE
T ss_pred HHHHHHHHHHHHHHcCCcEEEEcCC--------CCHHHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999973 23588999998887 44444
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.99 E-value=5.3 Score=36.34 Aligned_cols=108 Identities=9% Similarity=0.109 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+......|+ .|+ . .
T Consensus 48 ~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpVi--aGv---g------~--------------- 101 (344)
T 2hmc_A 48 ALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVI--VGT---G------A--------------- 101 (344)
T ss_dssp HHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEE--EEC---C------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEE--Eec---C------C---------------
Confidence 57788888888999998776443 47999999999998333223333 344 1 0
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEecccccc-CCCCccHHHHHHHHh-ccCCCceEEecC
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK-HADSLRADIIAKVIG-RLGLEKTMFEAT 189 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d-~~g~~r~d~v~~i~~-~~~~~~lifEAP 189 (240)
.+..+.|+.++..-++|||.|++=.--.+. ...+---+-..+|++ ..++-=++.--|
T Consensus 102 ---~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P 160 (344)
T 2hmc_A 102 ---VNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP 160 (344)
T ss_dssp ---SSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 136788999999999999999986542222 111101112234555 555555666666
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=81.97 E-value=6.1 Score=35.14 Aligned_cols=147 Identities=16% Similarity=0.125 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++-+-|.+.|=+.-.| ..|+.++|.++++.+.+.- =++.-=+|+ |
T Consensus 30 ~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv-------g----------------- 85 (309)
T 3fkr_A 30 SQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTT-------S----------------- 85 (309)
T ss_dssp HHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------C-----------------
T ss_pred HHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEec-------C-----------------
Confidence 67788888889999999774333 3899999999999998831 011001122 1
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-----------c-----------------cccC---CCCccHHHHHHHHh
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-----------D-----------------VCKH---ADSLRADIIAKVIG 177 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-----------g-----------------i~d~---~g~~r~d~v~~i~~ 177 (240)
..+..+.|+.+++.-++|||-|++=.- | +|+. .-++..+.+.++.+
T Consensus 86 ---~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~tg~~l~~~~~~~La~ 162 (309)
T 3fkr_A 86 ---HYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPASGTALSAPFLARMAR 162 (309)
T ss_dssp ---CSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence 114688899999999999999998421 1 3553 23566777777765
Q ss_pred ccC-CCceEEecCC-chhHHHHHHHhCCCcccccCCCCch-hhhhhhCccCC
Q 026320 178 RLG-LEKTMFEATN-PRTSEWFIRRYGPKVNLFVDHSQVM-DLECLRGRNLG 226 (240)
Q Consensus 178 ~~~-~~~lifEAP~-k~qQ~~~I~~fG~~VNLgI~~~dVl-~LE~LR~~~~G 226 (240)
..| +-=+=.|++. -.+...+++..+.++....+-+|-+ -+++|..|--|
T Consensus 163 ~~pnIvgiK~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~~~l~~~l~~G~~G 214 (309)
T 3fkr_A 163 EIEQVAYFXIETPGAANKLRELIRLGGDAIEGPWDGEEAITLLADLHAGATG 214 (309)
T ss_dssp HSTTEEEEEECSSSHHHHHHHHHHHHGGGCCEEEECGGGTTHHHHHHTTCCE
T ss_pred hCCCEEEEECCCcchHHHHHHHHHhcCCceeeecCCchHHHHHHHHHCCCcE
Confidence 443 2222236654 3344555665554332112333443 35777755544
|
| >1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=3.1 Score=37.66 Aligned_cols=47 Identities=23% Similarity=0.212 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-----CC--hhHHHHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE-----IP--EETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~-----l~--~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+.+.++.++++||++||++...+. ++ .+...++-+.+++.|+++..
T Consensus 34 ~l~e~l~~aa~~G~d~VEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~GL~i~~ 87 (394)
T 1xla_A 34 DPVEAVHKLAELGAYGITFHDNDLIPFDATEAEREKILGDFNQALKDTGLKVPM 87 (394)
T ss_dssp CHHHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHCCBCCE
T ss_pred CHHHHHHHHHHcCCCEEEecCCccCcccCCchhhHHHHHHHHHHHHHcCCeEEE
Confidence 3788899999999999999863221 11 34566778888888998754
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=81.86 E-value=4.5 Score=35.33 Aligned_cols=49 Identities=2% Similarity=-0.060 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHHhC-Cceec----CCcHHHHHHHhCCchHHHHHHHHHHcC-CCEEEecCCc
Q 026320 19 PKPFIEEVVKRAHQH-DVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVG-FDTIELNVGS 75 (240)
Q Consensus 19 p~~~l~eKi~l~~~~-gV~v~----~Gtl~E~a~~qg~~~~~~yl~~~k~lG-F~~IEISdGt 75 (240)
+.+.+.+.++-.++. ++++. ++ | ....+.++.+.+.+.| .+.|-+++.+
T Consensus 144 ~~~~~~~ii~~vr~~~~~Pv~vK~~~~-~-------~~~~~~~~a~~~~~aG~~d~i~v~~~~ 198 (314)
T 2e6f_A 144 DFEAMRTYLQQVSLAYGLPFGVKMPPY-F-------DIAHFDTAAAVLNEFPLVKFVTCVNSV 198 (314)
T ss_dssp SHHHHHHHHHHHHHHHCSCEEEEECCC-C-------CHHHHHHHHHHHHTCTTEEEEEECCCE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCC-C-------CHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 556678888877765 65443 33 2 1125677888999999 9999999987
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=81.80 E-value=12 Score=39.49 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
..+++++.+.+.|.+.|-|.+..-+ .+.....|+.+++.|..| ++.+... ..+. |+ ++ +.
T Consensus 646 ~~~~~i~~a~~~g~d~irif~sl~~--~~~~~~~i~~~~~~g~~v--~~~i~~~-~~~~---d~--------~r----~~ 705 (1165)
T 2qf7_A 646 VVKYFVRQAAKGGIDLFRVFDCLNW--VENMRVSMDAIAEENKLC--EAAICYT-GDIL---NS--------AR----PK 705 (1165)
T ss_dssp HHHHHHHHHHHHTCCEEEEECTTCC--GGGGHHHHHHHHHTTCEE--EEEEECC-SCTT---CT--------TS----GG
T ss_pred hHHHHHHHHHhcCcCEEEEEeeHHH--HHHHHHHHHHHHhccceE--EEEEEEe-cccc---CC--------CC----CC
Confidence 3678999999999999999765433 345567899999999655 4444321 1111 21 11 12
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhcc
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRL 179 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~ 179 (240)
.|++.+++.+++..++||+.| .|+|..|-..+..+.++++.+
T Consensus 706 ~~~~~~~~~~~~~~~~Ga~~i-----~l~DT~G~~~P~~~~~lv~~l 747 (1165)
T 2qf7_A 706 YDLKYYTNLAVELEKAGAHII-----AVKDMAGLLKPAAAKVLFKAL 747 (1165)
T ss_dssp GCHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEE-----EEeCccCCcCHHHHHHHHHHH
Confidence 368999999999999999966 478899999988888887643
|
| >2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A | Back alignment and structure |
|---|
Probab=81.77 E-value=7.5 Score=34.43 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=85.0
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCC-------------hhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCc
Q 026320 48 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP-------------EETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSD 113 (240)
Q Consensus 48 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~-------------~~~r~~lI~~~~~~G~~v~~E~g~k~~~-~evg~~ 113 (240)
.++-..+.+-++++.+.||+.+|||..++.+- .++..++-+.+++.|+.+.. -.|- -..++
T Consensus 57 ~~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft~~~~~w~~~~~~~~~~~~~~~~~~~~gi~i~~----H~py~iNL~S- 131 (301)
T 2j6v_A 57 AENLRDLERILRFNADHGFALFRIGQHLIPFASHPLFPYDWEGAYEEELARLGALARAFGQRLSM----HPGQYVNPGS- 131 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEECCGGGSTTTTSTTCCSCHHHHHHHHHHHHHHHHHHTTCEEEE----CCCTTCCTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeccCcccccCCCcccCCcCCCCHHHHHHHHHHHHHcCCeEEE----eCchhhcCCC-
Confidence 44345788899999999999999988877653 25566777788888986533 1111 01111
Q ss_pred cccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc--EEEEeccccccCCCCccHHHHHHHHhccCC-----CceEE
Q 026320 114 RDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD--MIMIDSDDVCKHADSLRADIIAKVIGRLGL-----EKTMF 186 (240)
Q Consensus 114 ~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~--~ViiEargi~d~~g~~r~d~v~~i~~~~~~-----~~lif 186 (240)
.|++ ....+.+.+.+.++++=+.|+. .+++=.-+.|. . +++.++.+++.+.. ++|..
T Consensus 132 ~~~e------------~re~Si~~l~~~l~~a~~lG~~~a~~v~HpG~~~~---~-~e~~~~r~~e~l~~~~~a~~~l~l 195 (301)
T 2j6v_A 132 PDPE------------VVERSLAELRYSARLLSLLGAEDGVLVLHLGGAYG---E-KGKALRRFVENLRGEEEVLRYLAL 195 (301)
T ss_dssp SCHH------------HHHHHHHHHHHHHHHHHHTTCTTCEEEEECCCCTT---C-HHHHHHHHHHHHTTCHHHHHHEEE
T ss_pred CCHH------------HHHHHHHHHHHHHHHHHHcCCCCCEEEECCCcCCC---C-HHHHHHHHHHHHhHHHhhcceEEE
Confidence 1110 1123567888888888889943 66666555443 2 56666666655431 37888
Q ss_pred ecCC----chhHHHHHHHhC
Q 026320 187 EATN----PRTSEWFIRRYG 202 (240)
Q Consensus 187 EAP~----k~qQ~~~I~~fG 202 (240)
|.-. ..+=..+++..+
T Consensus 196 En~~~~~t~~el~~l~~~~~ 215 (301)
T 2j6v_A 196 ENDERLWNVEEVLKAAEALG 215 (301)
T ss_dssp ECCSSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHhcCC
Confidence 8753 455566777775
|
| >2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.59 E-value=1.5 Score=40.41 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=36.9
Q ss_pred HHHHHHcCCCEEEecC--------CcccC----------ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 58 VEDCKQVGFDTIELNV--------GSLEI----------PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 58 l~~~k~lGF~~IEISd--------Gti~l----------~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
++++++|||++|+++= |.-.. +.++..++|+.++++|++|+-.+-..
T Consensus 56 LdyL~~LGv~~I~l~Pi~~~~~~~gY~~~dy~~idp~~Gt~~df~~lv~~~h~~Gi~VilD~V~N 120 (475)
T 2z1k_A 56 LPYLLDLGVEAIYLNPVFASTANHRYHTVDYFQVDPILGGNEALRHLLEVAHAHGVRVILDGVFN 120 (475)
T ss_dssp HHHHHHHTCCEEEECCCEEESSTTCCSEEEEEEECGGGTCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred hHHHHHcCCCEEEECCCcCCCCCCCcCCCCcCccCcccCCHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 5678999999999983 22111 36889999999999999998877553
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=81.42 E-value=16 Score=32.26 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=63.3
Q ss_pred HHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHc----CCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 59 EDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSA----GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 59 ~~~k~lGF~~IEISdGti-----~l~~~~r~~lI~~~~~~----G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
+..-+.|..+|-|=|+.. -+|.++.++-|+.+++. |.. |-+.- ..|. + .. .+..
T Consensus 99 ~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~----~~i~a-------Rtda-~---~~--~~g~ 161 (275)
T 2ze3_A 99 EHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVP----VFLNA-------RTDT-F---LK--GHGA 161 (275)
T ss_dssp HHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSC----CEEEE-------ECCT-T---TT--TCSS
T ss_pred HHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCC----eEEEE-------echh-h---hc--cccc
Confidence 333458999999999873 46777888888888776 533 33321 1111 0 00 0000
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
......++.|++++...+||||.|.+|+- ...+++.+|.+.++
T Consensus 162 ~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~--------~~~~~~~~i~~~~~ 204 (275)
T 2ze3_A 162 TDEERLAETVRRGQAYADAGADGIFVPLA--------LQSQDIRALADALR 204 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCSEEECTTC--------CCHHHHHHHHHHCS
T ss_pred cchhhHHHHHHHHHHHHHCCCCEEEECCC--------CCHHHHHHHHHhcC
Confidence 00013689999999999999999999973 23578888888776
|
| >3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A | Back alignment and structure |
|---|
Probab=81.39 E-value=12 Score=33.47 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=75.5
Q ss_pred ccEEEecCcccc-------ccChhHHHHHHHHHHhCCc---eecC-CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 026320 5 VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 73 (240)
Q Consensus 5 ID~lKfg~GTs~-------l~p~~~l~eKi~l~~~~gV---~v~~-Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISd 73 (240)
+-++|++.|-.+ ..| ++.-|+++++-|+ ++|| ||+-- -+.+...-+.|.+-|| ++|=.-
T Consensus 148 ~G~VkISTGp~Sas~~~~~~V~---vetAiaml~dmG~~SvKffPM~Gl~~------leEl~avAkAca~~g~-~lEPTG 217 (275)
T 3m6y_A 148 VGYVNISTGPISAAGEEKAIVP---IKTAIALVRDMGGNSLKYFPMKGLAH------EEEYRAVAKACAEEGF-ALEPTG 217 (275)
T ss_dssp TTEEECCCSTTGGGSSSCCEEE---HHHHHHHHHHHTCCEEEECCCTTTTT------HHHHHHHHHHHHHHTC-EEEEBS
T ss_pred cceEEeccCCCccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCccc------HHHHHHHHHHHHHcCc-eECCCC
Confidence 347899999332 444 7888999999887 8888 65310 0133444578899999 999865
Q ss_pred CcccCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHH
Q 026320 74 GSLEIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLE 147 (240)
Q Consensus 74 Gti~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLe 147 (240)
| |+.+...++++.+.++|-+ ++|.+--.-=..++| . -..+|+.++...+++-|+
T Consensus 218 G---Idl~Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG--------~---------TrpedV~~ll~~~K~l~~ 272 (275)
T 3m6y_A 218 G---IDKENFETIVRIALEANVEQVIPHVYSSIIDKETG--------N---------TKVEAVRELLAVVKKLVD 272 (275)
T ss_dssp S---CCTTTHHHHHHHHHHTTCSCBCCEECGGGBCTTTC--------C---------BCHHHHHHHHHHHHHHHT
T ss_pred C---ccHhHHHHHHHHHHHcCCCeecccccceeccCCCC--------C---------CCHHHHHHHHHHHHHHHh
Confidence 5 5556666899999999986 888664321111121 1 123578889998888775
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=81.35 E-value=10 Score=33.92 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=50.7
Q ss_pred HHHcCCCEEEecCC----------cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 61 CKQVGFDTIELNVG----------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 61 ~k~lGF~~IEISdG----------ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
+.+.||++|=+.|+ |..++.++.+...+.+.+. .++. +.--|-.|+.|
T Consensus 45 ~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~---------~~~~----~vvaD~pfgsY--------- 102 (275)
T 3vav_A 45 LDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARA---------QPRA----LIVADLPFGTY--------- 102 (275)
T ss_dssp HHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHT---------CCSS----EEEEECCTTSC---------
T ss_pred HHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhc---------CCCC----CEEEecCCCCC---------
Confidence 45789999955543 3478889998888888772 2110 00011112222
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
.++++.++.+.+.+++||+.|-+|+-
T Consensus 103 --~s~~~a~~~a~rl~kaGa~aVklEdg 128 (275)
T 3vav_A 103 --GTPADAFASAVKLMRAGAQMVKFEGG 128 (275)
T ss_dssp --SSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred --CCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 16899999999999999999999973
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=81.29 E-value=1.3 Score=38.48 Aligned_cols=98 Identities=12% Similarity=0.185 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCceecCC--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHc--CCc
Q 026320 23 IEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSA--GLK 96 (240)
Q Consensus 23 l~eKi~l~~~~gV~v~~G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~--r~~lI~~~~~~--G~~ 96 (240)
-.+-++.++++|+.+.|| |.-|+. .+.++|+|+|-+ .|.+. =..+|+.++.- .+.
T Consensus 116 ~~~vi~~~~~~gi~~ipGv~TptEi~-------------~A~~~Gad~vK~------FPa~~~gG~~~lkal~~p~p~ip 176 (232)
T 4e38_A 116 NPNTVRACQEIGIDIVPGVNNPSTVE-------------AALEMGLTTLKF------FPAEASGGISMVKSLVGPYGDIR 176 (232)
T ss_dssp CHHHHHHHHHHTCEEECEECSHHHHH-------------HHHHTTCCEEEE------CSTTTTTHHHHHHHHHTTCTTCE
T ss_pred CHHHHHHHHHcCCCEEcCCCCHHHHH-------------HHHHcCCCEEEE------CcCccccCHHHHHHHHHHhcCCC
Confidence 345666777777777776 455544 235789999977 23222 14677777662 222
Q ss_pred ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccC----CCCccHHHH
Q 026320 97 AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKH----ADSLRADII 172 (240)
Q Consensus 97 v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~----~g~~r~d~v 172 (240)
+.|.=|+ + .+.+...|++||..+.+ +.-++.. +|+| +.+
T Consensus 177 ~~ptGGI------------------------------~----~~n~~~~l~aGa~~~vg-Gs~l~~~~~i~~~~~--~~i 219 (232)
T 4e38_A 177 LMPTGGI------------------------------T----PSNIDNYLAIPQVLACG-GTWMVDKKLVTNGEW--DEI 219 (232)
T ss_dssp EEEBSSC------------------------------C----TTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCH--HHH
T ss_pred eeeEcCC------------------------------C----HHHHHHHHHCCCeEEEE-CchhcChHHhhcCCH--HHH
Confidence 2222222 1 24577889999999888 6666654 4553 444
Q ss_pred HHHH
Q 026320 173 AKVI 176 (240)
Q Consensus 173 ~~i~ 176 (240)
.+.+
T Consensus 220 ~~~a 223 (232)
T 4e38_A 220 ARLT 223 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=81.21 E-value=4.3 Score=37.32 Aligned_cols=93 Identities=13% Similarity=0.125 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--------Chh----HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEI--------PEE----TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l--------~~~----~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
++.-++.++..|.+.|-|...+-++ +.+ .-.+.|+.+++.|..| +|+-.+.
T Consensus 89 i~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v--~~~~ed~--------------- 151 (370)
T 3rmj_A 89 IRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDV--EFSCEDA--------------- 151 (370)
T ss_dssp HHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCE--EEEEETG---------------
T ss_pred HHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE--EEecCCC---------------
Confidence 4555555566899988886655333 222 2334677888888764 4444221
Q ss_pred cccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHh
Q 026320 122 VARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIG 177 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~ 177 (240)
+..|++.+++.++...++||+.|- ++|..|-..+..+.++++
T Consensus 152 ---------~r~~~~~~~~~~~~~~~~Ga~~i~-----l~DT~G~~~P~~~~~lv~ 193 (370)
T 3rmj_A 152 ---------LRSEIDFLAEICGAVIEAGATTIN-----IPDTVGYSIPYKTEEFFR 193 (370)
T ss_dssp ---------GGSCHHHHHHHHHHHHHHTCCEEE-----EECSSSCCCHHHHHHHHH
T ss_pred ---------CccCHHHHHHHHHHHHHcCCCEEE-----ecCccCCcCHHHHHHHHH
Confidence 122689999999999999998764 688888888877776664
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=80.99 E-value=3.8 Score=34.50 Aligned_cols=97 Identities=10% Similarity=0.095 Sum_probs=60.7
Q ss_pred cEEEecCccccccChhHHHHHHHHHHhCCceecC-Cc------HHHH-------------HHHhCCchHHHHHHHHHHcC
Q 026320 6 DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GD------WAEH-------------LIRNGPSAFKEYVEDCKQVG 65 (240)
Q Consensus 6 D~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~-Gt------l~E~-------------a~~qg~~~~~~yl~~~k~lG 65 (240)
|.+=+.+.....++++.+++..++++++|+.+.. .+ +... ...+..+.+++.++.|+++|
T Consensus 36 ~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG 115 (290)
T 3tva_A 36 PTVQVHAPHPHTRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVG 115 (290)
T ss_dssp SEEEEECCCGGGCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHT
T ss_pred CEEEecCCCCCcCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444444333334566799999999999997654 21 1110 00000126899999999999
Q ss_pred CCEEEecCCcccCC-hhH-------HHHHHHHHHHcCCcccceee
Q 026320 66 FDTIELNVGSLEIP-EET-------LLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 66 F~~IEISdGti~l~-~~~-------r~~lI~~~~~~G~~v~~E~g 102 (240)
.+.|=+..|...-. .+. ..++.+.+++.|+++.-|-.
T Consensus 116 ~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~ 160 (290)
T 3tva_A 116 CPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETG 160 (290)
T ss_dssp CSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECC
T ss_pred CCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecC
Confidence 99999988865322 222 34455667777887666654
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=80.92 E-value=11 Score=37.85 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=94.7
Q ss_pred ccEEEecCccccccChhHHHHHHHHHHhCCceec-----CCcHHHHHHHh--CCchHHHHHHHHHHcCCCEEEecCCccc
Q 026320 5 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----TGDWAEHLIRN--GPSAFKEYVEDCKQVGFDTIELNVGSLE 77 (240)
Q Consensus 5 ID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~-----~Gtl~E~a~~q--g~~~~~~yl~~~k~lGF~~IEISdGti~ 77 (240)
+|.+-+-..+ -.-+.++.-++.++++|..+. +|.| |-.... +++.+-+..+.+.+.|.+.|=|-|-.--
T Consensus 211 vd~irIf~s~---n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~-~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~ 286 (718)
T 3bg3_A 211 MDVFRVFDSL---NYLPNMLLGMEAAGSAGGVVEAAISYTGDV-ADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGL 286 (718)
T ss_dssp CCEEEEECSS---CCHHHHHHHHHHHHTTTSEEEEEEECCSCT-TCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSC
T ss_pred cCEEEEEecH---HHHHHHHHHHHHHHHcCCeEEEEEEeeccc-cCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCC
Confidence 3444444333 234578888899999987532 2333 222211 2234555666667889999999998888
Q ss_pred CChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 78 IPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 78 l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
+.+.+-.++|+.++++ +. ...+++.+. . |...-+-.....++|||+.|=.=-
T Consensus 287 ~~P~~v~~lV~~lk~~-~p-~~~I~~H~H-n-------------------------d~GlAvANslaAveAGa~~VD~ti 338 (718)
T 3bg3_A 287 LKPTACTMLVSSLRDR-FP-DLPLHIHTH-D-------------------------TSGAGVAAMLACAQAGADVVDVAA 338 (718)
T ss_dssp CCHHHHHHHHHHHHHH-ST-TCCEEEECC-C-------------------------TTSCHHHHHHHHHHTTCSEEEEBC
T ss_pred cCHHHHHHHHHHHHHh-CC-CCeEEEEEC-C-------------------------CccHHHHHHHHHHHhCCCEEEecC
Confidence 8888888999999874 10 223555331 1 223336777788999999653333
Q ss_pred cccccCCCCccHHHHHHHHhccCCC
Q 026320 158 DDVCKHADSLRADIIAKVIGRLGLE 182 (240)
Q Consensus 158 rgi~d~~g~~r~d~v~~i~~~~~~~ 182 (240)
.|+=...||...+.+-..+...|.+
T Consensus 339 ~GlGertGN~~lE~vv~~L~~~g~~ 363 (718)
T 3bg3_A 339 DSMSGMTSQPSMGALVACTRGTPLD 363 (718)
T ss_dssp GGGCSTTSCCBHHHHHHHHTTSTTC
T ss_pred cccccccCchhHHHHHHHHHhcCCC
Confidence 5888889999988877777666543
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=7.5 Score=34.76 Aligned_cols=85 Identities=27% Similarity=0.301 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--c------cC----------ChhHH----HHHHHHHHHcCCcccceeeeecCCCCCC
Q 026320 54 FKEYVEDCKQVGFDTIELNVGS--L------EI----------PEETL----LRYVRLVKSAGLKAKPKFAVMFNKSDIP 111 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGt--i------~l----------~~~~r----~~lI~~~~~~G~~v~~E~g~k~~~~evg 111 (240)
+-+--+.+++.|||.|||.-+. + +. +.+.| .++|+.+++.= -.-+++|....+..
T Consensus 146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v---~~pv~vris~~~~~ 222 (338)
T 1z41_A 146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVRVSASDYT 222 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEECCCCS
T ss_pred HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc---CCcEEEEecCcccC
Confidence 3444556678899999997542 1 11 12334 45666666541 12266654221110
Q ss_pred CccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 112 SDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 112 ~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
+..| +.++.++.++..-++|+++|-+=++.
T Consensus 223 ------------~~g~------~~~~~~~~a~~l~~~Gvd~i~v~~~~ 252 (338)
T 1z41_A 223 ------------DKGL------DIADHIGFAKWMKEQGVDLIDCSSGA 252 (338)
T ss_dssp ------------TTSC------CHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ------------CCCC------CHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 1112 46788888888889999999986653
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=80.64 E-value=15 Score=32.80 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=63.1
Q ss_pred HHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccccc
Q 026320 58 VEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti-------------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~ 124 (240)
.+...+.|..+|-|=|+.. -.|.++..+-|+.+++.+- .+.|-+.- ..|..
T Consensus 100 v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~--~~~~~i~a-------Rtda~------- 163 (295)
T 1s2w_A 100 VRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQT--DPDFCIVA-------RVEAF------- 163 (295)
T ss_dssp HHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCS--STTCEEEE-------EECTT-------
T ss_pred HHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcc--cCCcEEEE-------eehHH-------
Confidence 3444468999999999862 2677888888888887652 23444431 11210
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccC
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~ 180 (240)
+. ....++.|++++...+||||.|.+|+. --..+++.+|.+.++
T Consensus 164 --~a---~~g~~~ai~Ra~ay~eAGAd~i~~e~~-------~~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 164 --IA---GWGLDEALKRAEAYRNAGADAILMHSK-------KADPSDIEAFMKAWN 207 (295)
T ss_dssp --TT---TCCHHHHHHHHHHHHHTTCSEEEECCC-------SSSSHHHHHHHHHHT
T ss_pred --hc---cccHHHHHHHHHHHHHcCCCEEEEcCC-------CCCHHHHHHHHHHcC
Confidence 00 013689999999999999999999962 112456666766654
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=80.49 E-value=13 Score=34.19 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=59.0
Q ss_pred cChhHHHHHHHHHHhCC---ceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHH
Q 026320 18 MPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKS 92 (240)
Q Consensus 18 ~p~~~l~eKi~l~~~~g---V~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEI--SdGti~l~~~~r~~lI~~~~~ 92 (240)
++.+.+.+-|+..|+++ |-...|+ . ....+.++.+.+.|.+.|+| +.| +.+...+.|+.+++
T Consensus 79 ~s~e~~~~~i~~vk~~~~l~vga~vg~-------~--~~~~~~~~~lieaGvd~I~idta~G----~~~~~~~~I~~ik~ 145 (366)
T 4fo4_A 79 MSIEQQAAQVHQVKISGGLRVGAAVGA-------A--PGNEERVKALVEAGVDVLLIDSSHG----HSEGVLQRIRETRA 145 (366)
T ss_dssp SCHHHHHHHHHHHHTTTSCCCEEECCS-------C--TTCHHHHHHHHHTTCSEEEEECSCT----TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCceeEEEEecc-------C--hhHHHHHHHHHhCCCCEEEEeCCCC----CCHHHHHHHHHHHH
Confidence 45566778888887754 2222232 1 24677889999999999998 444 23456678888887
Q ss_pred c--CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEE
Q 026320 93 A--GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMI 155 (240)
Q Consensus 93 ~--G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~Vii 155 (240)
. +..++. |- .. + .+.+++..++|||.|.+
T Consensus 146 ~~p~v~Vi~--G~-----------------v~-----------t----~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 146 AYPHLEIIG--GN-----------------VA-----------T----AEGARALIEAGVSAVKV 176 (366)
T ss_dssp HCTTCEEEE--EE-----------------EC-----------S----HHHHHHHHHHTCSEEEE
T ss_pred hcCCCceEe--ee-----------------eC-----------C----HHHHHHHHHcCCCEEEE
Confidence 5 222211 10 01 2 46677888999999999
|
| >3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=80.39 E-value=3.2 Score=35.77 Aligned_cols=147 Identities=13% Similarity=0.127 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CCh----hHHHHHHHHHHHcCCcccceeeeecC--CCCCCCcccccccccccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE--IPE----ETLLRYVRLVKSAGLKAKPKFAVMFN--KSDIPSDRDRAFGAYVAR 124 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~--l~~----~~r~~lI~~~~~~G~~v~~E~g~k~~--~~evg~~~d~~~~~~~~~ 124 (240)
..+..++.++++||++||+.-.... .|. ++..++-+.+++.|+++.+=...-.. ..... ..|+.
T Consensus 36 ~~~~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i~~~~~~~~~~~~~~l~-~~d~~------- 107 (316)
T 3qxb_A 36 PDRLAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTIESTFGGLASYTYNHFL-APTLE------- 107 (316)
T ss_dssp HHHHHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTSCBTT-CSSHH-------
T ss_pred HHHHHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeEEEeeccccccccccCC-CCCHH-------
Confidence 4566778889999999999876443 222 25667778888999987542111000 00010 11110
Q ss_pred CCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc----cccCCCCccH-------HHHH---HHHhccCCCceEEec--
Q 026320 125 APRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD----VCKHADSLRA-------DIIA---KVIGRLGLEKTMFEA-- 188 (240)
Q Consensus 125 ~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg----i~d~~g~~r~-------d~v~---~i~~~~~~~~lifEA-- 188 (240)
......+.+.+.++..-+.||..|++-.-+ .+... .-++ +.+. +.++..|+..|.+|.
T Consensus 108 -----~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~~ 181 (316)
T 3qxb_A 108 -----LQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNP-ARREEIYAIARDMWIELAAYAKRQGLSMLYVEPVP 181 (316)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCS
T ss_pred -----HHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCc-ccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 011224455666666677899999865422 11110 0111 1122 233445664488997
Q ss_pred C------CchhHHHHHHHh---C-CCcccccCCCC
Q 026320 189 T------NPRTSEWFIRRY---G-PKVNLFVDHSQ 213 (240)
Q Consensus 189 P------~k~qQ~~~I~~f---G-~~VNLgI~~~d 213 (240)
. ...+-..+++.. | |+|-+-+|...
T Consensus 182 ~~~~~~~t~~~~~~l~~~v~~~~~~~vg~~lD~~H 216 (316)
T 3qxb_A 182 LATEFPSSAADAARLMADLDGRTEIPVRLLVDWGH 216 (316)
T ss_dssp CTTBSSCSHHHHHHHHHHHTTTSSSCEEEEEEHHH
T ss_pred CccccCCCHHHHHHHHHHHhccCCCCEEEEEEccc
Confidence 2 345567799998 6 45555344433
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=80.38 E-value=2.1 Score=38.69 Aligned_cols=132 Identities=14% Similarity=0.184 Sum_probs=76.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-----------cCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCcccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSL-----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYV 122 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti-----------~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~ 122 (240)
+.+-.+...+.|..+|-|=|... -+|.++.++-|+.+++.-=..-++|-+- . .-|. +
T Consensus 97 v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~---A----RTDa-~---- 164 (302)
T 3fa4_A 97 VARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVI---A----RTDS-L---- 164 (302)
T ss_dssp HHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEE---E----EECC-H----
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEE---E----Eecc-c----
Confidence 33445556678999999988764 3577776666666655300001334441 1 1121 1
Q ss_pred ccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceE---EecCC-chhHHHHH
Q 026320 123 ARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTM---FEATN-PRTSEWFI 198 (240)
Q Consensus 123 ~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~li---fEAP~-k~qQ~~~I 198 (240)
.....++.|++++...+||||.|.+|+- -..+.+.++.+.++.--++ .|-+. |..-..=+
T Consensus 165 --------~~~gldeAi~Ra~ay~eAGAD~ifi~g~--------~~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~~~~~eL 228 (302)
T 3fa4_A 165 --------QTHGYEESVARLRAARDAGADVGFLEGI--------TSREMARQVIQDLAGWPLLLNMVEHGATPSISAAEA 228 (302)
T ss_dssp --------HHHCHHHHHHHHHHHHTTTCSEEEETTC--------CCHHHHHHHHHHTTTSCEEEECCTTSSSCCCCHHHH
T ss_pred --------ccCCHHHHHHHHHHHHHcCCCEEeecCC--------CCHHHHHHHHHHhcCCceeEEEecCCCCCCCCHHHH
Confidence 0125799999999999999999999983 1467788888877422222 33321 22223335
Q ss_pred HHhCCCcccccCCCCch
Q 026320 199 RRYGPKVNLFVDHSQVM 215 (240)
Q Consensus 199 ~~fG~~VNLgI~~~dVl 215 (240)
...| ||+-|=|...+
T Consensus 229 ~~lG--v~~v~~~~~~~ 243 (302)
T 3fa4_A 229 KEMG--FRIIIFPFAAL 243 (302)
T ss_dssp HHHT--CSEEEETTTTH
T ss_pred HHcC--CCEEEEchHHH
Confidence 6666 45553333333
|
| >2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85, glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A {Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A* | Back alignment and structure |
|---|
Probab=80.24 E-value=3.5 Score=40.79 Aligned_cols=88 Identities=17% Similarity=0.342 Sum_probs=56.0
Q ss_pred CcccEEEecCccc----cccChhHHHHHHHHHHhCCceecCCc-------------HHHHHHHhCCc----hHHHHHHHH
Q 026320 3 QFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVSTGD-------------WAEHLIRNGPS----AFKEYVEDC 61 (240)
Q Consensus 3 ~yID~lKfg~GTs----~l~p~~~l~eKi~l~~~~gV~v~~Gt-------------l~E~a~~qg~~----~~~~yl~~~ 61 (240)
+|||.+=. |+-+ .+.|+ =-.-|+.||+|||+|. || |++-++.++.+ -+++.++.|
T Consensus 90 ~yvD~fvy-fshs~~~~~~~~P--~~~widaAHrnGV~Vl-Gt~~fe~~~~gg~~~~~~~lL~~~~~~~~~~a~kLv~~a 165 (626)
T 2vtf_A 90 HYTDLMVY-WAGSAGEGIIVPP--SADVIDASHRNGVPIL-GNVFFPPTVYGGQLEWLEQMLEQEEDGSFPLADKLLEVA 165 (626)
T ss_dssp GGCSEEEE-CCCBTTTBSEECC--CHHHHHHHHHTTCCEE-EEEEECCGGGTCCHHHHHHHTCCCTTCCCHHHHHHHHHH
T ss_pred cceeeeee-ecCCCccceeeCC--CcHHHHHHHHcCCEEE-EEEecCcccCCcHHHHHHHHhccCccchHHHHHHHHHHH
Confidence 58886643 4322 23332 2357899999999876 32 45556545432 379999999
Q ss_pred HHcCCCEEEecCCcccCChhHH---HHHHHHHHHcC
Q 026320 62 KQVGFDTIELNVGSLEIPEETL---LRYVRLVKSAG 94 (240)
Q Consensus 62 k~lGF~~IEISdGti~l~~~~r---~~lI~~~~~~G 94 (240)
+.+|||.+=|+-=+-.++.+.. ..+++.+++.+
T Consensus 166 ~~yGFDGw~IN~E~~~~~~~~~~~l~~F~~~L~~~~ 201 (626)
T 2vtf_A 166 DYYGFDGWFINQQTEGADEGTAEAMQAFLVYLQEQK 201 (626)
T ss_dssp HHHTCCEEEEEECCTTCCHHHHHHHHHHHHHHHHHS
T ss_pred HHhCCCceEEeeccccCCHHHHHHHHHHHHHHHHhC
Confidence 9999999888765533455443 44555555543
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.07 E-value=10 Score=32.74 Aligned_cols=67 Identities=13% Similarity=0.236 Sum_probs=48.2
Q ss_pred HHHHHHhC--CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 26 VVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 26 Ki~l~~~~--gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
-++..+++ ++++..=|+.-.++.. .+++|++.|++.|++.+=+. ++|.++..++++.++++|+.+.+
T Consensus 84 ~v~~ir~~~~~~Pi~~m~y~n~v~~~---g~~~f~~~~~~aG~dgvii~----dl~~ee~~~~~~~~~~~gl~~i~ 152 (262)
T 2ekc_A 84 LSETLRKEFPDIPFLLMTYYNPIFRI---GLEKFCRLSREKGIDGFIVP----DLPPEEAEELKAVMKKYVLSFVP 152 (262)
T ss_dssp HHHHHHHHCTTSCEEEECCHHHHHHH---CHHHHHHHHHHTTCCEEECT----TCCHHHHHHHHHHHHHTTCEECC
T ss_pred HHHHHHhhcCCCCEEEEecCcHHHHh---hHHHHHHHHHHcCCCEEEEC----CCCHHHHHHHHHHHHHcCCcEEE
Confidence 34444544 4443321344555555 47999999999999988886 56778889999999999988654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 240 | ||||
| d1qwga_ | 251 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 6e-68 | |
| d1u83a_ | 249 | c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase | 2e-53 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 207 bits (529), Expect = 6e-68
Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 31/229 (13%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVE 59
G ++D +KF G+ +++ + ++E + + V G E+ G F E++
Sbjct: 35 CGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGK--FDEFLN 92
Query: 60 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 119
+C+++GF+ +E++ GS +I E ++ K G + D
Sbjct: 93 ECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLT------ 146
Query: 120 AYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD------VCKHADSLRADIIA 173
+D I+ L+AGAD ++I+ + + ++ + +
Sbjct: 147 ---------------IDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELD 191
Query: 174 KVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 221
+ + + K +FEA FI ++G VNL + +V+ LE LR
Sbjct: 192 VLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLR 240
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Score = 170 bits (433), Expect = 2e-53
Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 36/230 (15%)
Query: 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYV 58
++D +KF G+ L +EE + +HD+ G + +++ + E+
Sbjct: 38 ASDYIDFVKFGWGTSLLTKD--LEEKISTLKEHDITFFFGGTLFEKYVSQKK---VNEFH 92
Query: 59 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAF 118
C G + IE++ G+L + + Y+ + +
Sbjct: 93 RYCTYFGCEYIEISNGTLPMTNKEKAAYIADFS---------------DEFLVLSEVGSK 137
Query: 119 GAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD-----VCKHADSLRADIIA 173
A +A S E++E +EAGA+ ++ ++ + +C + +R I+
Sbjct: 138 DAELASRQSSEEWLE-------YIVEDMEAGAEKVITEARESGTGGICSSSGDVRFQIVD 190
Query: 174 KVIGR-LGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLR 221
+I + + + +FEA N + FI++ GP VNL + + LE LR
Sbjct: 191 DIISSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLR 240
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 240 | |||
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 100.0 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 100.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 96.16 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 95.57 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 95.43 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 95.35 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 93.85 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.77 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 93.6 | |
| d1qtwa_ | 285 | Endonuclease IV {Escherichia coli [TaxId: 562]} | 93.36 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 92.85 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 92.77 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 92.15 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 91.83 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 91.47 | |
| d1e43a2 | 393 | Bacterial alpha-amylase {Chimera (Bacillus amyloli | 90.75 | |
| d1g94a2 | 354 | Bacterial alpha-amylase {Pseudoalteromonas halopla | 89.9 | |
| d1ht6a2 | 347 | Plant alpha-amylase {Barley (Hordeum vulgare), AMY | 89.03 | |
| d2d3na2 | 394 | Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: | 88.77 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 88.7 | |
| d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogen | 88.64 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 88.55 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 88.02 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 87.89 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 87.7 | |
| d1hx0a2 | 403 | Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 982 | 87.61 | |
| d1kwga2 | 393 | A4 beta-galactosidase {Thermus thermophilus [TaxId | 87.43 | |
| d1mxga2 | 361 | Bacterial alpha-amylase {Archaeon Pyrococcus woese | 87.24 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 87.22 | |
| d1bf2a3 | 475 | Isoamylase, central domain {Pseudomonas amyloderam | 86.83 | |
| d1wzla3 | 382 | Maltogenic amylase, central domain {Thermoactinomy | 86.79 | |
| d1hvxa2 | 393 | Bacterial alpha-amylase {Bacillus stearothermophil | 86.74 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 86.48 | |
| d1j0ha3 | 382 | Neopullulanase, central domain {Bacillus stearothe | 86.39 | |
| d1ur4a_ | 387 | Beta-1,4-galactanase {Bacillus licheniformis [TaxI | 86.11 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 86.08 | |
| d1gcya2 | 357 | G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase | 86.02 | |
| d1k77a_ | 260 | Hypothetical protein YgbM (EC1530) {Escherichia co | 85.67 | |
| d1hjsa_ | 332 | Beta-1,4-galactanase {Thielavia heterothallica, ak | 85.26 | |
| d1ud2a2 | 390 | Bacterial alpha-amylase {Bacillus sp., ksm-k38 [Ta | 85.15 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 84.75 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 84.61 | |
| d1gjwa2 | 572 | Maltosyltransferase {Thermotoga maritima [TaxId: 2 | 84.33 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 84.14 | |
| d1rh9a1 | 370 | Beta-mannanase {Tomato (Lycopersicon esculentum) [ | 83.98 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 83.75 | |
| d1tg7a5 | 354 | Beta-galactosidase LacA, N-terminal domain {Penici | 83.61 | |
| d1qhoa4 | 407 | Cyclodextrin glycosyltransferase {Bacillus stearot | 83.58 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 83.53 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 83.25 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 82.73 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 82.3 | |
| d1m7xa3 | 396 | 1,4-alpha-glucan branching enzyme, central domain | 82.23 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 81.24 | |
| d2c0ha1 | 350 | endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed | 80.86 | |
| d1m53a2 | 478 | Isomaltulose synthase PalI {Klebsiella sp., lx3 [T | 80.52 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 80.51 |
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7.7e-78 Score=535.76 Aligned_cols=208 Identities=23% Similarity=0.415 Sum_probs=195.8
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+|+|||++||||||++|||++.|++||++||+|||+|||| ||||+|+.|| ++++|+++|++|||++|||||||++||
T Consensus 35 ag~yID~~K~g~Gt~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~qg--~~~~y~~~~~~lGf~~iEiSdg~~~i~ 112 (251)
T d1qwga_ 35 CGDYIDFVKFGWGTSAVIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKG--KFDEFLNECEKLGFEAVEISDGSSDIS 112 (251)
T ss_dssp HGGGCSEEEECTTGGGGSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTT--CHHHHHHHHHHHTCCEEEECCSSSCCC
T ss_pred hhhheeEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHHcC--CHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 5899999999999999999999999999999999999996 7999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|++++++||+|+||+|+|++.++. ..++++||+++++||+|||++||+|||
T Consensus 113 ~~~~~~~I~~~~~~G~~V~~EvG~K~~~~~~---------------------~~~~~~~i~~~~~~LeaGA~~ViiEarE 171 (251)
T d1qwga_ 113 LEERNNAIKRAKDNGFMVLTEVGKKMPDKDK---------------------QLTIDDRIKLINFDLDAGADYVIIEGRE 171 (251)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCSSHHHHT---------------------TCCHHHHHHHHHHHHHHTCSEEEECCTT
T ss_pred HHHHHHHHHHHHhCCCEEeecccCCCCCCcc---------------------ccCHHHHHHHHHHHHHCCCceeEeehhh
Confidence 9999999999999999999999999753211 115899999999999999999999987
Q ss_pred -----ccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCCccc
Q 026320 159 -----DVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKSHRS 231 (240)
Q Consensus 159 -----gi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~~~~ 231 (240)
|||+++|++|++++++|++++|++|+|||||+|+||+|||++|||||||| |+|+||++|||||+|++|.+...
T Consensus 172 sg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiifEAP~k~~q~w~I~~fGp~VNL~NI~~~~vi~LE~LR~GLrgdT~gk 250 (251)
T d1qwga_ 172 SGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDEVISLETLRRGLRGDTFGK 250 (251)
T ss_dssp TCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHHTCSGGGTTT
T ss_pred cCCccceecCCCChhHHHHHHHHHhCCcccEEEECCChhHHHHHHHHhCCCcccccCCHHHHhHHHHHhcCCCcccccc
Confidence 79999999999999999999999999999999999999999999999999 99999999999998888866543
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=100.00 E-value=1.1e-73 Score=508.40 Aligned_cols=202 Identities=21% Similarity=0.367 Sum_probs=174.8
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+|+|||++||||||++++| .|++||++||+|||+||+| ||||+|+.|| ++++|+++|++|||++|||||||++||
T Consensus 38 ~g~yID~vK~g~Gts~l~~--~L~eKI~l~~~~~V~v~~GGtlfE~a~~~~--~~~~y~~~~~~lGf~~iEiSdg~i~i~ 113 (249)
T d1u83a_ 38 ASDYIDFVKFGWGTSLLTK--DLEEKISTLKEHDITFFFGGTLFEKYVSQK--KVNEFHRYCTYFGCEYIEISNGTLPMT 113 (249)
T ss_dssp HGGGCCEEEECTTGGGGCT--THHHHHHHHHHTTCEEEECHHHHHHHHHTT--CHHHHHHHHHHTTCSEEEECCSSSCCC
T ss_pred hhhheeEEEecCceeccCH--HHHHHHHHHHHcCCeEeCCCHHHHHHHHcC--CHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 5899999999999999999 5999999999999999996 7999999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc-
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD- 158 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar- 158 (240)
+++|+++|+++++ ++.|++|+|+|++.... ..++++||++++++|+||||+||+|||
T Consensus 114 ~~~~~~~I~~~~~-~~~V~sEvG~K~~~~~~---------------------~~~~~~~i~~~~~~LeaGA~~ViiEarE 171 (249)
T d1u83a_ 114 NKEKAAYIADFSD-EFLVLSEVGSKDAELAS---------------------RQSSEEWLEYIVEDMEAGAEKVITEARE 171 (249)
T ss_dssp HHHHHHHHHHHTT-TSEEEEECSCCC---------------------------CCSTHHHHHHHHHHHHTEEEEEEC---
T ss_pred HHHHHHHHHHHHh-cCeeccccCCcCccccC---------------------CCCHHHHHHHHHHHHHCCCceEEeehhc
Confidence 9999999999988 67899999998753111 014678899999999999999999998
Q ss_pred ----ccccCCCCccHHHHHHHHhc-cCCCceEEecCCchhHHHHHHHhCCCcccc-cCCCCchhhhhhhCccCCCC
Q 026320 159 ----DVCKHADSLRADIIAKVIGR-LGLEKTMFEATNPRTSEWFIRRYGPKVNLF-VDHSQVMDLECLRGRNLGKS 228 (240)
Q Consensus 159 ----gi~d~~g~~r~d~v~~i~~~-~~~~~lifEAP~k~qQ~~~I~~fG~~VNLg-I~~~dVl~LE~LR~~~~G~~ 228 (240)
|||+++|++|++++++|+++ +|++++|||||+|+||+|||++|||||||| |+|+||++|||||+|++|.+
T Consensus 172 sg~~Gi~~~~g~~r~~~i~~ii~~~~~~~~iifEAp~k~~q~~~I~~~G~~VNL~NI~~~~vi~LE~lR~GLRgDt 247 (249)
T d1u83a_ 172 SGTGGICSSSGDVRFQIVDDIISSDIDINRLIFEAPNKTLQQGFIQKIGPNVNLANIPFHDAIALETLRLGLRSDT 247 (249)
T ss_dssp ---------------CCHHHHHTTTSCGGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHHTTCSGGG
T ss_pred cCCCCCcCCCcchhHHHHHHHHHhcCChhhEEEeCCCHHHHHHHHHHhCCCcccccCCHHHHHHHHHHhccccccc
Confidence 79999999999999999975 999999999999999999999999999999 99999999999999998865
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=96.16 E-value=0.0091 Score=49.69 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=94.0
Q ss_pred ChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccc
Q 026320 19 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~ 98 (240)
.-+.+++-++.++++|+.+..+. +.+-...+..+.+..+.+.++|++.|-++|-.-.+.+++-.++++.+++.. ...
T Consensus 117 ~~~~~~~~~~~a~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~-~~~ 193 (289)
T d1nvma2 117 EADVSKQHIEYARNLGMDTVGFL--MMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVL-KPE 193 (289)
T ss_dssp CGGGGHHHHHHHHHHTCEEEEEE--ESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHS-CTT
T ss_pred hhhhHhHHHHHHHHhCCceeeEe--eeccccCchhhhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHh-ccc
Confidence 34467888999999998655321 111122334677888999999999999999999999999999999998852 122
Q ss_pred ceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--ccccCCCCccHHHHHHHH
Q 026320 99 PKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--DVCKHADSLRADIIAKVI 176 (240)
Q Consensus 99 ~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--gi~d~~g~~r~d~v~~i~ 176 (240)
..+|..+. . |....+......+++||++ |++- |+=...||.-++.+-..+
T Consensus 194 ~~i~~H~H-n-------------------------~~g~a~an~l~A~~~G~~~--id~si~GlG~~~GN~~tE~lv~~l 245 (289)
T d1nvma2 194 TQVGMHAH-H-------------------------NLSLGVANSIVAVEEGCDR--VDASLAGMGAGAGNAPLEVFIAVA 245 (289)
T ss_dssp SEEEEECB-C-------------------------TTSCHHHHHHHHHHTTCCE--EEEBGGGCSSTTCBCBHHHHHHHH
T ss_pred ccceeeec-h-------------------------HHHHHHHHHHHHHHhCCcE--eeccccccCCCCCCccHHHHHHHH
Confidence 23455331 1 1223367777889999996 5887 887889999988776666
Q ss_pred hccCC
Q 026320 177 GRLGL 181 (240)
Q Consensus 177 ~~~~~ 181 (240)
.+.|.
T Consensus 246 ~~~g~ 250 (289)
T d1nvma2 246 ERLGW 250 (289)
T ss_dssp HHHTC
T ss_pred HhcCC
Confidence 65553
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=95.57 E-value=0.19 Score=41.55 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+.+.++++++.+.|.+.+=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ .
T Consensus 24 ~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv---------~-------------- 80 (292)
T d1xkya1 24 AKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGT---------G-------------- 80 (292)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC---------C--------------
T ss_pred HHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEec---------C--------------
Confidence 368899999999999999884333 489999999999999873 0011111122 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccC----CCCccHHHHHHHHhc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKH----ADSLRADIIAKVIGR 178 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~----~g~~r~d~v~~i~~~ 178 (240)
..+..+.++++++.-++||+.|++=.- -+|+. .-.+..+.+.++.+
T Consensus 81 ----~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~- 155 (292)
T d1xkya1 81 ----SNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSE- 155 (292)
T ss_dssp ----CSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHT-
T ss_pred ----cccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhcc-
Confidence 124788899999999999999999541 13553 23577888888765
Q ss_pred cC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 179 LG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 179 ~~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.+ +--+-+++++..+...+++..++++.+.... +-.-+++++.|.-|
T Consensus 156 ~p~v~giK~~~~~~~~~~~~~~~~~~~~~v~~G~-~~~~~~~~~~G~~G 203 (292)
T d1xkya1 156 IENIVAIKDAGGDVLTMTEIIEKTADDFAVYSGD-DGLTLPAMAVGAKG 203 (292)
T ss_dssp STTEEEEEECSSCHHHHHHHHHHSCTTCEEEESS-GGGHHHHHHTTCCE
T ss_pred CCCEEEEeccccchhhhheeeeecCCCCEEEECC-ccccchHHHcCCCc
Confidence 44 5455577888888888889999988876433 34457777766544
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.43 E-value=0.055 Score=43.82 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
...++++.++++||+.|||.... .-+.++..++-+.+++.|+++..-..-.+.. .+. +-.
T Consensus 20 ~~~~~l~~~a~~G~dgIEi~~~~-~~~~~~~~~l~~~~~~~GL~i~~~~~~~~~~------~~~-------------~~~ 79 (250)
T d1yx1a1 20 GQASFLPLLAMAGAQRVELREEL-FAGPPDTEALTAAIQLQGLECVFSSPLELWR------EDG-------------QLN 79 (250)
T ss_dssp CGGGGHHHHHHHTCSEEEEEGGG-CSSCCCHHHHHHHHHHTTCEEEEEEEEEEEC------TTS-------------SBC
T ss_pred CHHHHHHHHHHhCCCEEEEeccc-CCCcchHHHHHHHHHHcCCEEEEeccccccc------Cch-------------hhH
Confidence 45678999999999999997433 3345556788899999999875432221110 000 001
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecC------CchhHHHH---HHHhCC
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEAT------NPRTSEWF---IRRYGP 203 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP------~k~qQ~~~---I~~fG~ 203 (240)
++....++.++ +.|+..|.+-+-. ..... +-..+...++..|+ +|..|.= ...+-..+ +..-.|
T Consensus 80 ~~~~~~i~~A~---~LG~~~v~~~~g~-~~~~~--~l~~l~~~a~~~Gv-~l~iE~h~~~~~~~~~~~~~~~~~~~~~~p 152 (250)
T d1yx1a1 80 PELEPTLRRAE---ACGAGWLKVSLGL-LPEQP--DLAALGRRLARHGL-QLLVENDQTPQGGRIEVLERFFRLAERQQL 152 (250)
T ss_dssp TTHHHHHHHHH---HTTCSEEEEEEEC-CCSSC--CHHHHHHHHTTSSC-EEEEECCSSHHHHCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHH---HhCCCEEEEeecc-cchhH--HHHHHHHHHHHcCC-EEEEEeCCCcccCCHHHHHHHHHHhhccCC
Confidence 23456666665 6799999987742 22223 34556777888887 7889962 22222233 333446
Q ss_pred CcccccCCCCch
Q 026320 204 KVNLFVDHSQVM 215 (240)
Q Consensus 204 ~VNLgI~~~dVl 215 (240)
+|.+-.|+.+..
T Consensus 153 ~vg~~~D~~h~~ 164 (250)
T d1yx1a1 153 DLAMTFDIGNWR 164 (250)
T ss_dssp SEEEEEETTGGG
T ss_pred ccccccchHHHH
Confidence 665556666544
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.35 E-value=0.12 Score=41.87 Aligned_cols=137 Identities=13% Similarity=0.203 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc--CC-hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE--IP-EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~--l~-~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+++.++.|+++||+.||+...... ++ .....++-+.+++.|+++.+ ++.-.+.... ..
T Consensus 19 ~lee~l~~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~~gl~i~~-l~~~~~~~~~-----------------~~ 80 (271)
T d2q02a1 19 SIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVT-INAVYPFNQL-----------------TE 80 (271)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEE-EEEETTTTSC-----------------CH
T ss_pred CHHHHHHHHHHhCCCEEEEecCcccccccccCCHHHHHHHHHHcCCcEEE-eecccccCCC-----------------CH
Confidence 6899999999999999999754332 22 22234555667888998754 3321111100 00
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCc--cHHHHH---HHHhccCCCceEEec--------CCchhHHH
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSL--RADIIA---KVIGRLGLEKTMFEA--------TNPRTSEW 196 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~--r~d~v~---~i~~~~~~~~lifEA--------P~k~qQ~~ 196 (240)
+..+++.+.++.+-+.|+..|++-..+- ...-.+ -.+.+. ++++..|+ ++..|. ....+...
T Consensus 81 ---~~~~~~~~~i~~a~~lG~~~v~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~~~~~~~~~~~~~~~~ 155 (271)
T d2q02a1 81 ---EVVKKTEGLLRDAQGVGARALVLCPLND-GTIVPPEVTVEAIKRLSDLFARYDI-QGLVEPLGFRVSSLRSAVWAQQ 155 (271)
T ss_dssp ---HHHHHHHHHHHHHHHHTCSEEEECCCCS-SBCCCHHHHHHHHHHHHHHHHTTTC-EEEECCCCSTTCSCCCHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHcCCcEEEEecCCC-CccchHHHHHHHHHHHHHHhccCCe-EEEEeecCCcCcccCCHHHHHH
Confidence 0123344444444567999998854311 111111 122222 33444553 455664 24556677
Q ss_pred HHHHhCCCcccccCCC
Q 026320 197 FIRRYGPKVNLFVDHS 212 (240)
Q Consensus 197 ~I~~fG~~VNLgI~~~ 212 (240)
+++..++++.+..|+.
T Consensus 156 li~~~~~~~g~~~D~~ 171 (271)
T d2q02a1 156 LIREAGSPFKVLLDTF 171 (271)
T ss_dssp HHHHHTCCCEEEEEHH
T ss_pred HHHHhCCccceeccch
Confidence 9999998865544443
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=93.85 E-value=0.09 Score=43.60 Aligned_cols=143 Identities=10% Similarity=0.123 Sum_probs=99.1
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceec--CCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE 81 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~--~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~ 81 (240)
.+|.++... .....+.+..-++.++.+|..+. ....++..+ .++.+.++.+.+.+.|.+.|-+.|-+-.+.+.
T Consensus 116 ~~~~~r~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~ 190 (303)
T d1rqba2 116 GMDVFRVFD---AMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVH--TVEGYVKLAGQLLDMGADSIALKDMAALLKPQ 190 (303)
T ss_dssp TCCEEEECC---TTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTC--CHHHHHHHHHHHHHTTCSEEEEEETTCCCCHH
T ss_pred hhhHHhhhh---hHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCC--CHHHHHHHHHHHHhcCCcEEeecCccchhhhH
Confidence 345555432 23344568888899999997543 222222111 23467788889999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--c
Q 026320 82 TLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--D 159 (240)
Q Consensus 82 ~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--g 159 (240)
+-.++|+.++++. .+.-.++..+ .. |...-+..+...++|||++ +++- |
T Consensus 191 ~v~~li~~l~~~~-~~~i~i~~H~-Hn-------------------------d~Gla~AN~laA~~aG~~~--id~ti~G 241 (303)
T d1rqba2 191 PAYDIIKAIKDTY-GQKTQINLHC-HS-------------------------TTGVTEVSLMKAIEAGVDV--VDTAISS 241 (303)
T ss_dssp HHHHHHHHHHHHH-CTTCCEEEEE-BC-------------------------TTSCHHHHHHHHHHTTCSE--EEEBCGG
T ss_pred HHHHHHHHHHhhc-CCcccceecc-Cc-------------------------hHHHHHHHHHHHHHcCCCE--EEECCcc
Confidence 9999999998852 1122345433 11 2233366777889999996 6886 7
Q ss_pred cccCCCCccHHHHHHHHhccC
Q 026320 160 VCKHADSLRADIIAKVIGRLG 180 (240)
Q Consensus 160 i~d~~g~~r~d~v~~i~~~~~ 180 (240)
+=...||..++.+-..+.++|
T Consensus 242 lG~~~GN~~te~lv~~L~~~g 262 (303)
T d1rqba2 242 MSLGPGHNPTESVAEMLEGTG 262 (303)
T ss_dssp GCSTTSBCBHHHHHHHTTTSS
T ss_pred CCCCCCCccHHHHHHHHHhcC
Confidence 877789999998877777666
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.77 E-value=0.22 Score=41.42 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHcCCCEEEec--CC-cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELN--VG-SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEIS--dG-ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
+.++++++++-+-|.+.|=+. .| +..|+.++|.++++.+.+. +..-+-+-.+ +
T Consensus 28 ~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~---~~~~~~vi~g---~------------------ 83 (296)
T d1xxxa1 28 ATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEA---VGDRARVIAG---A------------------ 83 (296)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHH---HTTTSEEEEE---C------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHH---hccccceEec---c------------------
Confidence 368889999999999999763 22 3469999999999998773 1111111000 0
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
+..++++.++.++..-++||+.||+=.-
T Consensus 84 --~~~s~~~~i~~a~~a~~~Gad~v~i~~P 111 (296)
T d1xxxa1 84 --GTYDTAHSIRLAKACAAEGAHGLLVVTP 111 (296)
T ss_dssp --CCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred --ccchhHHHHHHHHHHHHhcCCeEEEEec
Confidence 0125789999999999999999999663
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.32 Score=43.32 Aligned_cols=125 Identities=17% Similarity=0.265 Sum_probs=87.5
Q ss_pred cccEEEecCccccccChhHHHHHHHHHHhCCceecCCcHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCcc------
Q 026320 4 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSL------ 76 (240)
Q Consensus 4 yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~Gtl~E~a~~qg~~-~~~~yl~~~k~lGF~~IEISdGti------ 76 (240)
.|+-+=||+||-.+++++.|++.++.++++-- +.+. .|+.+.-+|. .-+++++.++++||+.|.+.-=+.
T Consensus 101 ~v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~-~~~~--~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~ 177 (441)
T d1olta_ 101 HVSQLHWGGGTPTYLNKAQISRLMKLLRENFQ-FNAD--AEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQR 177 (441)
T ss_dssp CEEEEEEEESCGGGSCHHHHHHHHHHHHHHSC-EEEE--EEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHH
T ss_pred ccceeEecCCCcCCCCHHHHHHHHHHHhhhcc-ccch--hcccccccccccchHHHHHHHHhCCceEEecchhcchhhhh
Confidence 47788899999999999999999999987622 1111 1333323332 235788999999999976632222
Q ss_pred ----cCChhHHHHHHHHHHHcCCc-ccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCc
Q 026320 77 ----EIPEETLLRYVRLVKSAGLK-AKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGAD 151 (240)
Q Consensus 77 ----~l~~~~r~~lI~~~~~~G~~-v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~ 151 (240)
.-+.++-.++|+.+++.||. +-..+-. +. |. +|.+.+.+.++.-++.|.+
T Consensus 178 ~i~R~~~~~~~~~~~~~~r~~g~~~vn~DLI~--Gl----------------Pg-------qT~~~~~~tl~~~~~l~pd 232 (441)
T d1olta_ 178 LVNREQDEEFIFALLNHAREIGFTSTNIDLIY--GL----------------PK-------QTPESFAFTLKRVAELNPD 232 (441)
T ss_dssp HHTCCCCHHHHHHHHHHHHHTTCCSCEEEEEE--SC----------------TT-------CCHHHHHHHHHHHHHHCCS
T ss_pred hhhcCCCHHHHHHHHHHHHhcccceeeccccc--cc----------------CC-------cchHHHHHHHHHHHhhCCC
Confidence 22556677899999999987 4443322 21 11 2578999999999999999
Q ss_pred EEEEe
Q 026320 152 MIMID 156 (240)
Q Consensus 152 ~ViiE 156 (240)
.|-+=
T Consensus 233 ~is~y 237 (441)
T d1olta_ 233 RLSVF 237 (441)
T ss_dssp EEEEE
T ss_pred ccccc
Confidence 99664
|
| >d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Endonuclease IV domain: Endonuclease IV species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.24 Score=39.80 Aligned_cols=146 Identities=10% Similarity=0.096 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------ccCChhHHHHHHHHHHHcCCcccceeeeecCC-CCCCCccccccccccccC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGS------LEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK-SDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGt------i~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~-~evg~~~d~~~~~~~~~~ 125 (240)
.+.+-++.++++||++|||-.+. -+++.++..++-+.+++.|+++.+ +..-.+. .... ..|+
T Consensus 13 ~l~~a~~~a~e~G~~~ieif~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~-~~~~~p~~~n~~-~~~~--------- 81 (285)
T d1qtwa_ 13 GLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQ-ILPHDSYLINLG-HPVT--------- 81 (285)
T ss_dssp CHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGG-BCCBCCTTCCTT-CSSH---------
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcce-eEecCCcccccc-cchH---------
Confidence 56667777899999999995432 357788888888889999987655 2221111 0111 1111
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHH-------HHhccCCCceEEecCC--------
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAK-------VIGRLGLEKTMFEATN-------- 190 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~-------i~~~~~~~~lifEAP~-------- 190 (240)
.....+.+.+.+.+..+-+.||..|++-.-...... -+.+..+. +...-.--.+..|...
T Consensus 82 ---~~r~~s~~~~~~~i~~a~~lG~~~vv~h~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~i~le~~~~~~~~~~~ 156 (285)
T d1qtwa_ 82 ---EALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQI--SEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGF 156 (285)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTS--CHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCS
T ss_pred ---HHHHHHHHHHHHHHHHHHHcCCCceeeeceeccCcc--cHHHHHHHHHHHHHHHHHhccCCeEEEeeccccCCcCcC
Confidence 111123444555555566779999999864222211 12222222 2221112235555432
Q ss_pred -chhHHHHHHHhCCCcccc--cCCCCc
Q 026320 191 -PRTSEWFIRRYGPKVNLF--VDHSQV 214 (240)
Q Consensus 191 -k~qQ~~~I~~fG~~VNLg--I~~~dV 214 (240)
..+-..+++..+..-|+| +|+.++
T Consensus 157 ~~~~~~~i~~~~~~~~~vgl~lD~~H~ 183 (285)
T d1qtwa_ 157 KFEHLAAIIDGVEDKSRVGVCIDTCHA 183 (285)
T ss_dssp SHHHHHHHHHHCSCGGGEEEEEEHHHH
T ss_pred CHHHHHHHHHHhcccccceEecccchH
Confidence 234567777777554554 565554
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=92.85 E-value=0.69 Score=38.10 Aligned_cols=79 Identities=10% Similarity=0.119 Sum_probs=56.1
Q ss_pred hHHHHHHHH-HHcCCCEEEecCCc---ccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 53 AFKEYVEDC-KQVGFDTIELNVGS---LEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 53 ~~~~yl~~~-k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
.++++++++ .+.|++.|=+.-.| ..|+.++|.++++.+.+. +=++.-=+|+ .
T Consensus 25 ~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv---------~-------------- 81 (293)
T d1f74a_ 25 GLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV---------G-------------- 81 (293)
T ss_dssp HHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC---------C--------------
T ss_pred HHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCcccccccc---------c--------------
Confidence 678888887 46699998775222 489999999999988763 1111111122 0
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
..++.+.++.++..-++||+.|++=..
T Consensus 82 ----~~s~~~~iela~~a~~~Gad~i~~~pP 108 (293)
T d1f74a_ 82 ----SVNLKEAVELGKYATELGYDCLSAVTP 108 (293)
T ss_dssp ----CSCHHHHHHHHHHHHHHTCSEEECCCC
T ss_pred ----cccHHHHHHHHHHHHHcCCCEeeccCc
Confidence 114788999999999999999999664
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=92.77 E-value=1.1 Score=37.50 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=84.5
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHH
Q 026320 58 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDL 137 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
+.+++..|-|+|=+--..+ +.++..++++.+++.||.|+.|++-
T Consensus 118 I~ea~~~GADaiLLI~~~L--~~~~l~~l~~~a~~lgl~~LvEvh~---------------------------------- 161 (247)
T d1a53a_ 118 IDDAYNLGADTVLLIVKIL--TERELESLLEYARSYGMEPLIEIND---------------------------------- 161 (247)
T ss_dssp HHHHHHHTCSEEEEEGGGS--CHHHHHHHHHHHHTTTCCCEEEECS----------------------------------
T ss_pred HHHHHHhhcchhhhhhhhc--cHHHHHHHHHHHHHHhhhHHhhcCC----------------------------------
Confidence 6789999999998877665 7788899999999999999999876
Q ss_pred HHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecC-CchhHHHHHHHhCCCccc
Q 026320 138 LIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEAT-NPRTSEWFIRRYGPKVNL 207 (240)
Q Consensus 138 ~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP-~k~qQ~~~I~~fG~~VNL 207 (240)
-+.+++.+++||+.|.|-.|.+. .-++..+...+++..+|.+.+ |-|.= .-..+...+++.|.|-=|
T Consensus 162 -~~El~~a~~~~a~iIGINnRnL~--t~~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l~~~G~davL 230 (247)
T d1a53a_ 162 -ENDLDIALRIGARFIGINSRDLE--TLEINKENQRKLISMIPSNVVKVAESGISERNEIEELRKLGVNAFL 230 (247)
T ss_dssp -HHHHHHHHHTTCSEEEEESBCTT--TCCBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHHHHTTCCEEE
T ss_pred -HHHHHHHHhCCCCeEeeeccChh--hhhhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 24566778999999999999774 344556777888888885544 45553 333456667777766443
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=1.5 Score=35.88 Aligned_cols=144 Identities=17% Similarity=0.089 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdG---ti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+-|.+.|=+.-. +..|+.++|.++++.+.+. +-++..=+|+ .
T Consensus 24 ~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv---------~--------------- 79 (295)
T d1hl2a_ 24 SLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV---------G--------------- 79 (295)
T ss_dssp HHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC---------C---------------
T ss_pred HHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeecc---------c---------------
Confidence 6788888988999999888643 3479999999999988773 1111111122 0
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc--------c------------------cccC----CCCccHHHHHHHHhc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD--------D------------------VCKH----ADSLRADIIAKVIGR 178 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------g------------------i~d~----~g~~r~d~v~~i~~~ 178 (240)
..+.++.++.++..-++||+.+|+=.. + +|+. .-.+..+++.++.+
T Consensus 80 ---~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~- 155 (295)
T d1hl2a_ 80 ---CVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVT- 155 (295)
T ss_dssp ---CSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHT-
T ss_pred ---cchhhHHHHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCccccccccccccccccccccccccc-
Confidence 114688899999999999999999763 1 2432 23578899999875
Q ss_pred cC-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 179 LG-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 179 ~~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.+ +--+=.++++..+... +++.++++.+.-.. +-.-+++++.|--|
T Consensus 156 ~pnvvgiK~~~~~~~~~~~-~~~~~~~~~v~~g~-~~~~~~~~~~G~~G 202 (295)
T d1hl2a_ 156 LPGVGALKQTSGDLYQMEQ-IRREHPDLVLYNGY-DEIFASGLLAGADG 202 (295)
T ss_dssp STTEEEEEECCCCHHHHHH-HHHHCTTCEEEECC-GGGHHHHHHHTCCE
T ss_pred CcchhhhccccccHHHHHH-HhhcCCCceEeccc-HHHHhhhhccCCCc
Confidence 44 5556677887665444 45667877765333 33457888876544
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=91.83 E-value=0.74 Score=37.72 Aligned_cols=147 Identities=8% Similarity=0.024 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCc---ccCChhHHHHHHHHHHHcC-CcccceeeeecCCCCCCCccccccccccccCCC
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGS---LEIPEETLLRYVRLVKSAG-LKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPR 127 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGt---i~l~~~~r~~lI~~~~~~G-~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~ 127 (240)
+.+.++++++-+-|.+.|=+--.| ..|+.++|.++++.+.+.. =++..=+|+
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv------------------------ 77 (295)
T d1o5ka_ 22 ESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGA------------------------ 77 (295)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC------------------------
T ss_pred HHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeec------------------------
Confidence 368888999989999998774333 4799999999999988741 111111122
Q ss_pred CcccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhc
Q 026320 128 STEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGR 178 (240)
Q Consensus 128 ~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~~~ 178 (240)
+..+.++.++.++..-++||+.|++=.- -+|+.- -.+..+.+.++++.
T Consensus 78 ---~~~st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P~~~g~~~~~~~~~~l~~~ 154 (295)
T d1o5ka_ 78 ---GTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAAD 154 (295)
T ss_dssp ---CCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred ---ccccHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEeccchhcccchhHHHHHHHhh
Confidence 0124688899999999999999999653 134432 34556666666655
Q ss_pred cC-CCceEEecCCchhHHHHHHHh---CCCcccccCCCCchhhhhhhCccCC
Q 026320 179 LG-LEKTMFEATNPRTSEWFIRRY---GPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 179 ~~-~~~lifEAP~k~qQ~~~I~~f---G~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
.+ +-=+-...++..+....++.. ++++.+ ....+..-++.++.|--|
T Consensus 155 ~~ni~~iK~~~~~~~~~~~~~~~~~~~~~~~~v-~~g~~~~~~~~~~~Ga~G 205 (295)
T d1o5ka_ 155 LKNVVGIKEANPDIDQIDRTVSLTKQARSDFMV-WSGNDDRTFYLLCAGGDG 205 (295)
T ss_dssp CTTEEEEEECCCCHHHHHHHHHHHHHHCTTCEE-EESSGGGHHHHHHHTCCE
T ss_pred cccccceecCCcchhhhhhHHHHhhhcCCccee-ccccccchhhhhhcCCCc
Confidence 55 333334444444444444322 333333 233344455666655444
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=91.47 E-value=0.42 Score=38.36 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=32.8
Q ss_pred EecCccccccChhHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 026320 9 KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 72 (240)
Q Consensus 9 Kfg~GTs~l~p~~~l~eKi~l~~~~gV---~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEIS 72 (240)
|+|.-++.+++...|.+.+++++++|. .+.+....-..... ..+++..+.+++.|+..+-++
T Consensus 2 k~~~~~~~~~~~~~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~--~~~~~l~~~l~~~gl~i~~~~ 66 (278)
T d1i60a_ 2 KLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYLKD--HSLDDLAEYFQTHHIKPLALN 66 (278)
T ss_dssp EEEEEGGGGTTTCCHHHHHHHHHHTTCSEEEEETTTHHHHHTTS--SCHHHHHHHHHTSSCEEEEEE
T ss_pred EEEEeHHHhCCCCCHHHHHHHHHHHCcCEEEeCCccccccccCc--ccHHHHHHHHHHcCCcEEEEe
Confidence 666655556655556666666666664 33333322222222 246666666666666655544
|
| >d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]
Probab=90.75 E-value=0.18 Score=42.87 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------------------------CC-----hhHHHHHHHHHHHcCCcccceeee
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLE------------------------IP-----EETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~------------------------l~-----~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+.+=+.++|+|||++|+||-=+-. ++ .++..+||+.++++|++|+-.+-.
T Consensus 23 i~~kLdylk~LGvtaI~L~Pi~~~~~~~~~gy~~~~~Y~~~~~~~~~~vd~~~Gt~~df~~Lv~~~H~~Gi~VilD~V~ 101 (393)
T d1e43a2 23 LQNDAEHLSDIGITAVWIPPAYKGLSQSDNGYGPYDLYDLGEFQQKGTVRTKYGTKSELQDAIGSLHSRNVQVYGDVVL 101 (393)
T ss_dssp HHHHHHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCCCCcccCcccccccccCccCCCCCCHHHHHHHHHHHHHcCCEEEEEEee
Confidence 334489999999999999643311 22 588899999999999999988854
|
| >d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]
Probab=89.90 E-value=0.19 Score=41.89 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc------------cCC---------hhHHHHHHHHHHHcCCcccceeeeec
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSL------------EIP---------EETLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti------------~l~---------~~~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
.++..++++++||++|+||==+- ..+ .++..+||+.++++|++|+-.+-...
T Consensus 17 ~~~~~dyl~~lG~tai~l~P~~~~~~~~~~y~gY~~~dy~vd~~~Gt~~dfk~LV~~aH~~GI~VilDvV~NH 89 (354)
T d1g94a2 17 AQECEQYLGPKGYAAVQVSPPNEHITGSQWWTRYQPVSYELQSRGGNRAQFIDMVNRCSAAGVDIYVDTLINH 89 (354)
T ss_dssp HHHHHHTHHHHTCCEEEECCCSCBBCSSSGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEEECSE
T ss_pred HHHHHHHHHHcCCCEEEeCcCccCCCCCCCcccCCCCcceeCCCCCCHHHHHHHHHHHhccCceeEEEeeccc
Confidence 35566778999999999973222 222 68899999999999999998887643
|
| >d1ht6a2 c.1.8.1 (A:1-347) Plant alpha-amylase {Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Plant alpha-amylase species: Barley (Hordeum vulgare), AMY1 isozyme [TaxId: 4513]
Probab=89.03 E-value=0.2 Score=40.58 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCc-------------ccCC------hhHHHHHHHHHHHcCCcccceeee
Q 026320 54 FKEYVEDCKQVGFDTIELNVGS-------------LEIP------EETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGt-------------i~l~------~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+.+-|+++++|||++|++|==+ ..++ .++..++|+.++++|++|+-.+-.
T Consensus 23 i~~kLdyl~~lGv~~i~L~Pi~~~~~~~gY~~~d~~~id~~~~G~~~~f~~lv~~~H~~gi~VilD~V~ 91 (347)
T d1ht6a2 23 MMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVI 91 (347)
T ss_dssp HHTTHHHHHHTTCCEEEECCCSCBSSTTSSSBCCTTCGGGCTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHhHHHHHHcCCCEEEECCCCcCCCCCCCCccCcCcCCcccCCCHHHHHHHHHHHhhcceEEeeeccc
Confidence 3444677899999999997322 2222 277899999999999999988855
|
| >d2d3na2 c.1.8.1 (A:5-398) Bacterial alpha-amylase {Bacillus sp. 707 [TaxId: 1416]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp. 707 [TaxId: 1416]
Probab=88.77 E-value=0.31 Score=41.03 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc------------------------C-----ChhHHHHHHHHHHHcCCcccceeee
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLE------------------------I-----PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~------------------------l-----~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
.+.+=|.++++|||++|.||==+-. + +.++..+||+.|+++|++|+-.+-.
T Consensus 22 ~i~~kLdyL~~LGv~aIwL~Pi~~~~~~~~~gY~~~~~yd~~~~~~~~~vd~~~Gt~~df~~Lv~~aH~~GIkVilDvV~ 101 (394)
T d2d3na2 22 RLNSDASNLKSKGITAVWIPPAWKGASQNDVGYGAYDLYDLGEFNQKGTVRTKYGTRSQLQAAVTSLKNNGIQVYGDVVM 101 (394)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCSEESSTTCCSCSEEETTCSSCSCBTTBSSBTTBCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECcCccCCCCCCCCCCcccCcccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 5777789999999999997642211 1 2578899999999999999887755
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=88.70 E-value=3 Score=33.79 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=79.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCccccc
Q 026320 54 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVE 133 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~ 133 (240)
....+....+.+++.+-+.+..-.+ +.....++.+++.|..+..-+.. .. .+..
T Consensus 105 ~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~--~~----------------------~~~~ 158 (303)
T d1rqba2 105 VDRFVDKSAENGMDVFRVFDAMNDP--RNMAHAMAAVKKAGKHAQGTICY--TI----------------------SPVH 158 (303)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCCT--HHHHHHHHHHHHTTCEEEEEEEC--CC----------------------STTC
T ss_pred hHHHHHHHHHhhhhHHhhhhhHHHH--HHHHHHHHHHHHcCCeEEEEEEe--cC----------------------CCCC
Confidence 3344455556667776665543332 34446777778877765322221 00 0112
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCceEEecCCchhHHHHHHHhCCCcccccCCCC
Q 026320 134 DVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQ 213 (240)
Q Consensus 134 ~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~d 213 (240)
+++.+++.+++.+++||+.| .++|..|...+..+.++++ ++.++|+|++-|++-.++
T Consensus 159 ~~~~~~~~~~~~~~~G~~~i-----~l~DT~G~~~P~~v~~li~------------------~l~~~~~~~i~i~~H~Hn 215 (303)
T d1rqba2 159 TVEGYVKLAGQLLDMGADSI-----ALKDMAALLKPQPAYDIIK------------------AIKDTYGQKTQINLHCHS 215 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEE-----EEEETTCCCCHHHHHHHHH------------------HHHHHHCTTCCEEEEEBC
T ss_pred CHHHHHHHHHHHHhcCCcEE-----eecCccchhhhHHHHHHHH------------------HHHhhcCCcccceeccCc
Confidence 57899999999999999866 4789999999999998875 567889999988844333
Q ss_pred c------hhhhhhhCcc
Q 026320 214 V------MDLECLRGRN 224 (240)
Q Consensus 214 V------l~LE~LR~~~ 224 (240)
= =+|.+++.|.
T Consensus 216 d~Gla~AN~laA~~aG~ 232 (303)
T d1rqba2 216 TTGVTEVSLMKAIEAGV 232 (303)
T ss_dssp TTSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 1 1366777543
|
| >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein Lmo2234 species: Listeria monocytogenes [TaxId: 1639]
Probab=88.64 E-value=0.42 Score=38.26 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCcccceeee
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---~l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
.+++.++.++++||+.||+...-. .-+..+..++-+.+++.|+++.. ++.
T Consensus 16 ~lee~l~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~-~~~ 68 (275)
T d2g0wa1 16 SFPKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDEHNMKVTE-VEY 68 (275)
T ss_dssp CHHHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHHTTCEEEE-EEC
T ss_pred CHHHHHHHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHHcCCceEE-Eee
Confidence 688888888999999998852111 01123345677778888887643 443
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=88.55 E-value=0.49 Score=37.95 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHcCCcccce
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti---~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
.+++-++.|++.||+.||+..... ..+......+-+.+.++|+++.+=
T Consensus 15 ~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 65 (278)
T d1i60a_ 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLAL 65 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEE
T ss_pred CHHHHHHHHHHHCcCEEEeCCccccccccCcccHHHHHHHHHHcCCcEEEE
Confidence 688999999999999999986642 233344556778888889987653
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=88.02 E-value=1.6 Score=35.44 Aligned_cols=90 Identities=14% Similarity=0.331 Sum_probs=61.0
Q ss_pred HHHHHHHHHhCCc-eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCccccee
Q 026320 23 IEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 101 (240)
Q Consensus 23 l~eKi~l~~~~gV-~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~ 101 (240)
.++-++.++++++ ++..+. +.+...+..+.+-+-|+++|||.-- .+...+.|+.++++ .|++
T Consensus 4 ~~~~~~~l~~~~iipvlr~~--------~~~~~~~~~~al~~~Gi~~iEitl~-----~~~a~~~I~~l~~~----~p~~ 66 (212)
T d1vhca_ 4 TQQIIEKLRELKIVPVIALD--------NADDILPLADTLAKNGLSVAEITFR-----SEAAADAIRLLRAN----RPDF 66 (212)
T ss_dssp HHHHHHHHHHHCEEEEECCS--------SGGGHHHHHHHHHHTTCCEEEEETT-----STTHHHHHHHHHHH----CTTC
T ss_pred HHHHHHHHHHCCEEEEEeCC--------CHHHHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHHhc----CCCc
Confidence 3456677788888 444453 2235667778888999999999754 46667899988764 2333
Q ss_pred eeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 102 AVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 102 g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
-+ +. |..++ .+++++..+|||++++-=+
T Consensus 67 ~v--Ga-----------GTV~~---------------~~~~~~a~~aGa~FivSP~ 94 (212)
T d1vhca_ 67 LI--AA-----------GTVLT---------------AEQVVLAKSSGADFVVTPG 94 (212)
T ss_dssp EE--EE-----------ESCCS---------------HHHHHHHHHHTCSEEECSS
T ss_pred eE--ee-----------eeccc---------------HHHHHHHHhhCCcEEECCC
Confidence 22 11 22223 6788999999999998655
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=87.89 E-value=3.6 Score=35.00 Aligned_cols=135 Identities=14% Similarity=0.166 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHc
Q 026320 20 KPFIEEVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSA 93 (240)
Q Consensus 20 ~~~l~eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r--~~lI~~~~~~ 93 (240)
.....-...++++++|+|+. |.-+ +.+..|-+.||+-|=+.--..++.+-.+ .+++++++..
T Consensus 58 ~~~~~~~~~~a~~~~vpv~lHlDH~~~~------------e~i~~ai~~GftSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~ 125 (305)
T d1rvga_ 58 RALTLMAVELAKEARVPVAVHLDHGSSY------------ESVLRALRAGFTSVMIDKSHEDFETNVRETRRVVEAAHAV 125 (305)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEEEECSH------------HHHHHHHHTTCSEEEECCTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCcEEEeehhccCh------------hhhHHHHhcCCceEEEcCccccHHHHHHHHHHHHHHhchh
Confidence 33444455555666665553 2222 3455677899999988766555544322 4688889999
Q ss_pred CCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc---ccccCCCC--cc
Q 026320 94 GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD---DVCKHADS--LR 168 (240)
Q Consensus 94 G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar---gi~d~~g~--~r 168 (240)
|.-|--|+|.=-+ .|-+...+. -...+ -||++..+.++ +-|.|.+=+==- |.|...++ ++
T Consensus 126 gv~VEaElG~igg-~Ed~~~~~~-~~~~~----------T~peea~~Fv~---~TgvD~LAvaiGn~HG~Yk~~~~~~l~ 190 (305)
T d1rvga_ 126 GVTVEAELGRLAG-IEEHVAVDE-KDALL----------TNPEEARIFME---RTGADYLAVAIGTSHGAYKGKGRPFID 190 (305)
T ss_dssp TCEEEEEESCCCC-SCC-------CCTTC----------CCHHHHHHHHH---HHCCSEEEECSSCCSSSBCSSSSCCCC
T ss_pred ceeEEeeeeeeec-ccccccccc-ccccc----------CCHHHHHHHHH---HhCccHhhhhhhhhhcccCCCCcccch
Confidence 9999999998422 111100000 00112 27888777776 469997765432 89988766 99
Q ss_pred HHHHHHHHhccCC
Q 026320 169 ADIIAKVIGRLGL 181 (240)
Q Consensus 169 ~d~v~~i~~~~~~ 181 (240)
-+.+++|-+.++.
T Consensus 191 ~~~l~~I~~~~~~ 203 (305)
T d1rvga_ 191 HARLERIARLVPA 203 (305)
T ss_dssp HHHHHHHHHHCCS
T ss_pred HHHHHHHHhccCC
Confidence 9999999876664
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=87.70 E-value=6.3 Score=33.07 Aligned_cols=143 Identities=10% Similarity=0.074 Sum_probs=87.6
Q ss_pred ecCccccccChhHHH-HHHHHHHhCCceecC----CcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH-
Q 026320 10 FSGGSHSLMPKPFIE-EVVKRAHQHDVYVST----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL- 83 (240)
Q Consensus 10 fg~GTs~l~p~~~l~-eKi~l~~~~gV~v~~----Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r- 83 (240)
++-|+.-.++-+.+. --..++++++|+|+. |.- -+.+..|-+.||+.|=+.--.+ |.++=
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~------------~e~i~~ai~~GftSVMiD~S~l--p~eeNi 113 (284)
T d1gvfa_ 48 GTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHES------------LDDIRRKVHAGVRSAMIDGSHF--PFAENV 113 (284)
T ss_dssp ECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEEEEEECC------------HHHHHHHHHTTCCEEEECCTTS--CHHHHH
T ss_pred cCHhHHhhCCHHHHHHHHHHHHHhcCCeEEeeeccccc------------hHHHHHHHhcCCCeEEEECCCC--CHHHHH
Confidence 333333333433333 233445666666663 222 3346677899999998855544 44443
Q ss_pred ---HHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--
Q 026320 84 ---LRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD-- 158 (240)
Q Consensus 84 ---~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-- 158 (240)
.++++.++..|.-|--|+|.--+.. -+...+.. +.. ..||++..+.++ +-|.|.+=+=--
T Consensus 114 ~~t~~vv~~ah~~gv~VE~ElG~v~g~e-d~~~~~~~-~~~----------~T~peea~~Fv~---~TgvD~LAvaiGt~ 178 (284)
T d1gvfa_ 114 KLVKSVVDFCHSQDCSVEAELGRLGGVE-DDMSVDAE-SAF----------LTDPQEAKRFVE---LTGVDSLAVAIGTA 178 (284)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESCCC-------------CCS----------SCCHHHHHHHHH---HHCCSEEEECSSCC
T ss_pred HHHHHHHHHHHhhccceeeeeeeecccc-cccccccc-ccc----------cCCHHHHHHHHH---HhCCCEEeeecCce
Confidence 3567778888999999999843211 11000100 111 237888888887 468887655433
Q ss_pred -ccccCCCCccHHHHHHHHhccCC
Q 026320 159 -DVCKHADSLRADIIAKVIGRLGL 181 (240)
Q Consensus 159 -gi~d~~g~~r~d~v~~i~~~~~~ 181 (240)
|.|...-+++-+.+.+|-+.++.
T Consensus 179 HG~y~~~p~l~~~~L~~i~~~~~v 202 (284)
T d1gvfa_ 179 HGLYSKTPKIDFQRLAEIREVVDV 202 (284)
T ss_dssp SSCCSSCCCCCHHHHHHHHHHCCS
T ss_pred eeccCCCCccccchhhhhhccccC
Confidence 89999889999999999888874
|
| >d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Animal alpha-amylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.61 E-value=0.17 Score=43.01 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCEEEecC----------------Ccc----cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 55 KEYVEDCKQVGFDTIELNV----------------GSL----EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEISd----------------Gti----~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
++..+++++|||++|+||= |.- .+ +.++..+||+.|+++|++|+-.+-.-
T Consensus 26 ~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~dY~v~~~~Gt~~dfk~Lv~~aH~~GI~VIlDvV~N 100 (403)
T d1hx0a2 26 LECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNVGVRIYVDAVIN 100 (403)
T ss_dssp HHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHhCCCEEEeCcCccCccCCCCCCCCceeecCCCCccCCCCCCHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 3455668999999999993 221 12 24688999999999999999877553
|
| >d1kwga2 c.1.8.1 (A:1-393) A4 beta-galactosidase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: A4 beta-galactosidase species: Thermus thermophilus [TaxId: 274]
Probab=87.43 E-value=0.2 Score=39.88 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccce
Q 026320 53 AFKEYVEDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPK 100 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISd----------Gti~l~~~~r~~lI~~~~~~G~~v~~E 100 (240)
..++-++.+|++||++|-+|. |..++ +..-++|+.++++|++|+-.
T Consensus 15 ~~~~D~~~~~~~G~n~vR~~i~~W~~iep~~G~~~~--~~~d~~i~~~~~~Gi~~iv~ 70 (393)
T d1kwga2 15 RWKEDARRMREAGLSHVRIGEFAWALLEPEPGRLEW--GWLDEAIATLAAEGLKVVLG 70 (393)
T ss_dssp HHHHHHHHHHHHTCCEEEECTTCHHHHCSBTTBCCC--HHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEecccchhhcCCCCCccCH--HHHHHHHHHHHHCCCEEEEE
Confidence 567778899999999998875 22222 34457899999999998633
|
| >d1mxga2 c.1.8.1 (A:1-361) Bacterial alpha-amylase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=87.24 E-value=0.4 Score=40.24 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------------------cCC-----hhHHHHHHHHHHHcCCcccceee
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL-------------------------EIP-----EETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti-------------------------~l~-----~~~r~~lI~~~~~~G~~v~~E~g 102 (240)
.+.+=|+++|+||+++|.+|==+- ++. .++..+||+.|+++|++|+-.+-
T Consensus 29 gi~~kLdylk~LGv~~Iwl~Pv~~~~~~~~~~gY~~~dy~~~~~~~~~~~vd~~~Gt~~d~~~LV~~aH~~GikVIlD~V 108 (361)
T d1mxga2 29 HIRSKIPEWYEAGISAIWLPPPSKGMSGGYSMGYDPYDYFDLGEYYQKGTVETRFGSKEELVRLIQTAHAYGIKVIADVV 108 (361)
T ss_dssp HHHHHHHHHHHHTCCEEECCCCSEETTGGGCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEeCcCeeCCCCCCCCCCCcccccccCccccccCCCCCCCCHHHHHHHHHHHHHCCCEEEEEee
Confidence 477778899999999999883221 111 57899999999999999997766
Q ss_pred ee
Q 026320 103 VM 104 (240)
Q Consensus 103 ~k 104 (240)
..
T Consensus 109 ~N 110 (361)
T d1mxga2 109 IN 110 (361)
T ss_dssp CS
T ss_pred ec
Confidence 53
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=87.22 E-value=2.1 Score=35.92 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecC--CCCCCCccccccccccccC
Q 026320 58 VEDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN--KSDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 58 l~~~k~lGF~~IEISd----------Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~--~~evg~~~d~~~~~~~~~~ 125 (240)
-..+.+.|+|.|=|.| .|.+++.++.....+.+++ |.++. ..+. .|+.+.
T Consensus 28 A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~r---------ga~~~~~i~dm------Pf~sy~--- 89 (260)
T d1o66a_ 28 AALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVAR---------GAKNAMIVSDL------PFGAYQ--- 89 (260)
T ss_dssp HHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHH---------HCSSSEEEEEC------CTTSSS---
T ss_pred HHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHc---------cCcceeeecch------hhhhhc---
Confidence 3456788999999965 4889999999887777766 22221 1111 122222
Q ss_pred CCCcccccCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHH
Q 026320 126 PRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVI 176 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~ 176 (240)
.+.++.++.+++.+++||+.|-+|+. ....+.++.|.
T Consensus 90 -------~~~~~~~~a~~~~~~~gadavk~eg~-------~~~~~~i~~l~ 126 (260)
T d1o66a_ 90 -------QSKEQAFAAAAELMAAGAHMVKLEGG-------VWMAETTEFLQ 126 (260)
T ss_dssp -------SCHHHHHHHHHHHHHTTCSEEEEECS-------GGGHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHhhhhhccccch-------hhhhHHHHHHH
Confidence 24688899889999999999999984 44455555555
|
| >d1bf2a3 c.1.8.1 (A:163-637) Isoamylase, central domain {Pseudomonas amyloderamosa [TaxId: 32043]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isoamylase, central domain species: Pseudomonas amyloderamosa [TaxId: 32043]
Probab=86.83 E-value=0.4 Score=41.10 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHHHcCCCEEEecC---------------------------CcccCC------------hhHHHHHHHHHHHcCCccc
Q 026320 58 VEDCKQVGFDTIELNV---------------------------GSLEIP------------EETLLRYVRLVKSAGLKAK 98 (240)
Q Consensus 58 l~~~k~lGF~~IEISd---------------------------Gti~l~------------~~~r~~lI~~~~~~G~~v~ 98 (240)
|+++++||+++|.++= .+..++ .++..+||+.|+++|++|+
T Consensus 49 Ldyl~~LGvnaiwl~Pi~~~~~~~~~~~~~~~~~~~y~GY~~~d~~~vdp~y~~~~~~~Gt~~d~~~LV~~aH~~GIrVi 128 (475)
T d1bf2a3 49 ASYLASLGVTAVEFLPVQETQNDANDVVPNSDANQNYWGYMTENYFSPDRRYAYNKAAGGPTAEFQAMVQAFHNAGIKVY 128 (475)
T ss_dssp HHHHHHHTCCEEEESCCBCBSCTTTTSSTTCCTTCCCSCCCBSCSSCBCGGGCSCCSTTHHHHHHHHHHHHHHHTTCEEE
T ss_pred hHHHHHcCCCEEEeCCCCcCCCcccccccccccCcCCCCCCcccCCCcCcccccCCCCCCCHHHHHHHHHHHHhcCcEEE
Confidence 5678999999999982 112333 4678999999999999999
Q ss_pred ceeeeec
Q 026320 99 PKFAVMF 105 (240)
Q Consensus 99 ~E~g~k~ 105 (240)
-.+-.-+
T Consensus 129 lD~V~NH 135 (475)
T d1bf2a3 129 MDVVYNH 135 (475)
T ss_dssp EEECCSS
T ss_pred EEecccc
Confidence 9887643
|
| >d1wzla3 c.1.8.1 (A:121-502) Maltogenic amylase, central domain {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltogenic amylase, central domain species: Thermoactinomyces vulgaris, TVAII [TaxId: 2026]
Probab=86.79 E-value=0.37 Score=40.07 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCCEEEecC----------CcccC--------ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 56 EYVEDCKQVGFDTIELNV----------GSLEI--------PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISd----------Gti~l--------~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+-|.++|+|||++|+++= ...+. +.++..++|+.++++|++|+-.+-..
T Consensus 57 ~kLdyl~~lGi~~I~l~Pv~~~~~~~gY~~~~~~~vd~~~Gt~~d~~~lv~~~H~~Gi~vilD~V~N 123 (382)
T d1wzla3 57 DRLPYLEELGVTALYFTPIFASPSHHKYDTADYLAIDPQFGDLPTFRRLVDEAHRRGIKIILDAVFN 123 (382)
T ss_dssp HTHHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHTTTCEEEEEECCS
T ss_pred HhhHHHHHCCCCEEEECCcCCCCcccCCccccccccccCCCCHHHHHHHHHHHHhcccceEeeeeec
Confidence 346788999999999973 11111 56889999999999999999987664
|
| >d1hvxa2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.74 E-value=0.5 Score=39.72 Aligned_cols=52 Identities=10% Similarity=0.182 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc------------------------cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSL------------------------EI-----PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti------------------------~l-----~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
.+.+=|.++|+|||++|.||==+- .+ +.++..+||+.|+++|++|+-.+-.
T Consensus 25 ~i~~kLdyLk~LGv~aI~L~Pi~~~~~~~~~GY~~~d~y~~~~~~~~~~vd~~~Gt~~df~~LV~~aH~~GIkVIlDvV~ 104 (393)
T d1hvxa2 25 KVANEANNLSSLGITALWLPPAYKGTSRSDVGYGVYDLYDLGEFNQKGAVRTKYGTKAQYLQAIQAAHAAGMQVYADVVF 104 (393)
T ss_dssp HHHHHHHHHHHTTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCccCccccccccccCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEEec
Confidence 355667889999999999874321 12 2478999999999999999988765
Q ss_pred e
Q 026320 104 M 104 (240)
Q Consensus 104 k 104 (240)
.
T Consensus 105 N 105 (393)
T d1hvxa2 105 D 105 (393)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.48 E-value=0.61 Score=39.16 Aligned_cols=151 Identities=14% Similarity=0.174 Sum_probs=100.2
Q ss_pred ChhHHHHHHHHHHhCCc---eecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEE-EecC----CcccCChhHHHHHHHHH
Q 026320 19 PKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI-ELNV----GSLEIPEETLLRYVRLV 90 (240)
Q Consensus 19 p~~~l~eKi~l~~~~gV---~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~I-EISd----Gti~l~~~~r~~lI~~~ 90 (240)
.+..+++-++.|++.|. .++-|+. + +..+ .-.++++.+++.||.++ |+.. ....++.+++.+.+++.
T Consensus 83 ~qg~~~~y~~~~~~lGf~~iEiSdg~~-~--i~~~--~~~~~I~~~~~~G~~V~~EvG~K~~~~~~~~~~~~~i~~~~~~ 157 (251)
T d1qwga_ 83 SKGKFDEFLNECEKLGFEAVEISDGSS-D--ISLE--ERNNAIKRAKDNGFMVLTEVGKKMPDKDKQLTIDDRIKLINFD 157 (251)
T ss_dssp HTTCHHHHHHHHHHHTCCEEEECCSSS-C--CCHH--HHHHHHHHHHHTTCEEEEEECCSSHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHcCCCEEEEcCCcc-C--CCHH--HHHHHHHHHHhCCCEEeecccCCCCCCccccCHHHHHHHHHHH
Confidence 34568999999999998 4555643 1 1111 44589999999999886 6653 34578899999999988
Q ss_pred HHcCCc-ccce-------eeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccccc
Q 026320 91 KSAGLK-AKPK-------FAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDVCK 162 (240)
Q Consensus 91 ~~~G~~-v~~E-------~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi~d 162 (240)
-++|=. |+-| +|+-++. + .| -..+++.+...+ |-++||-||-
T Consensus 158 LeaGA~~ViiEarEsg~~~Gi~~~~------g-----------~~-------r~~~i~~i~~~l--~~~kiifEAP---- 207 (251)
T d1qwga_ 158 LDAGADYVIIEGRESGKGKGLFDKE------G-----------KV-------KENELDVLAKNV--DINKVIFEAP---- 207 (251)
T ss_dssp HHHTCSEEEECCTTTCCSSTTBCTT------S-----------CB-------CHHHHHHHHTTS--CGGGEEEECC----
T ss_pred HHCCCceeEeehhhcCCccceecCC------C-----------Ch-------hHHHHHHHHHhC--CcccEEEECC----
Confidence 888743 5554 2331110 0 01 145667766655 8899999986
Q ss_pred CCCCccHHHHHHHHhccCCCceEE-ecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCCC
Q 026320 163 HADSLRADIIAKVIGRLGLEKTMF-EATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLGK 227 (240)
Q Consensus 163 ~~g~~r~d~v~~i~~~~~~~~lif-EAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G~ 227 (240)
.++.-..++.++|++-=++ =+|+.-.+..=+| . -||++||||
T Consensus 208 -----~k~~q~w~I~~fGp~VNL~NI~~~~vi~LE~LR-~-----------------GLrgdT~gk 250 (251)
T d1qwga_ 208 -----QKSQQVAFILKFGSSVNLANIAFDEVISLETLR-R-----------------GLRGDTFGK 250 (251)
T ss_dssp -----SHHHHHHHHHHHCTTCCEEEEEGGGHHHHHHHH-H-----------------TCSGGGTTT
T ss_pred -----ChhHHHHHHHHhCCCcccccCCHHHHhHHHHHh-c-----------------CCCcccccc
Confidence 3666777888899776666 3555555555544 2 367777776
|
| >d1j0ha3 c.1.8.1 (A:124-505) Neopullulanase, central domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Neopullulanase, central domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.39 E-value=0.41 Score=39.85 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=35.6
Q ss_pred HHHHHHcCCCEEEecCC--------ccc----------CChhHHHHHHHHHHHcCCcccceeee
Q 026320 58 VEDCKQVGFDTIELNVG--------SLE----------IPEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 58 l~~~k~lGF~~IEISdG--------ti~----------l~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
|+++++|||++|+++== .-. =+.++..++|+.++++|++|+-.+-.
T Consensus 59 ldyl~~LGv~~i~L~Pi~~~~~~~gy~~~d~~~vd~~~Gt~~~~~~lv~~aH~~Gi~VilD~V~ 122 (382)
T d1j0ha3 59 LDYLVDLGITGIYLTPIFRSPSNHKYDTADYFEVDPHFGDKETLKTLIDRCHEKGIRVMLDAVF 122 (382)
T ss_dssp HHHHHHHTCCEEEECCCEECSSSSCCSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCCcCCcccCCCcccccccCCCCCCHHHHHHHHHHhhhccceEEEEeee
Confidence 45779999999999641 000 12568889999999999999999865
|
| >d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Bacillus licheniformis [TaxId: 1402]
Probab=86.11 E-value=1.1 Score=38.27 Aligned_cols=96 Identities=17% Similarity=0.150 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCCEEEec------C--C----cccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccc
Q 026320 54 FKEYVEDCKQVGFDTIELN------V--G----SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAY 121 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEIS------d--G----ti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~ 121 (240)
-++.++.+|+.||++|-|= + + .-.-..+...+++++|+++||+|+--++..++..+-+ + .
T Consensus 40 ~~d~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~sd~wadp~--~------q 111 (387)
T d1ur4a_ 40 KQDIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYSDFWADPA--K------Q 111 (387)
T ss_dssp BCCHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSS--C------C
T ss_pred cccHHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcCCC--C------C
Confidence 3467899999999999972 1 1 0122356677899999999999999998755443322 1 1
Q ss_pred cccCCCCcccccCHHH-H----HHHHHHHHHcCCcEEEEec
Q 026320 122 VARAPRSTEYVEDVDL-L----IRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 122 ~~~~~~~~~~~~~~~~-~----i~~~~~dLeAGA~~ViiEa 157 (240)
..|..|......+..+ + -..+.+...+|+...|+|-
T Consensus 112 ~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei 152 (387)
T d1ur4a_ 112 KAPKAWANLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQV 152 (387)
T ss_dssp CCCGGGTTCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCchhhhccchhHHHHHHHHHHHHHHHHHhhcCCCccEEEE
Confidence 2345565332211111 1 1234456678898889984
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.08 E-value=3.2 Score=33.90 Aligned_cols=67 Identities=9% Similarity=0.040 Sum_probs=38.2
Q ss_pred CCcccEEEecCccccccC-hhHHHHHHHHHHhCCceecC----C---cHHHHHHH------------------hCCchHH
Q 026320 2 GQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVST----G---DWAEHLIR------------------NGPSAFK 55 (240)
Q Consensus 2 g~yID~lKfg~GTs~l~p-~~~l~eKi~l~~~~gV~v~~----G---tl~E~a~~------------------qg~~~~~ 55 (240)
++||+++|+|.=-..-+. +..++....+++.+|..+.. + .=.+.++. -|.+.++
T Consensus 52 ~~~v~~~Kig~~lf~~~G~~~~~~~~~~~~~~~~~~IflDlK~~DIpnTv~~a~~a~~~~~~~~~d~vTvh~~~G~~~l~ 131 (267)
T d1dqwa_ 52 GPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVS 131 (267)
T ss_dssp GGGCSEEEECGGGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHSTTTCHHHHCSEEEEESTTCTHHHH
T ss_pred CCcceEEEECHHHHhhcChHHHHHHHHHHHhccCceEecCccccCCcHHHHHHHHHHHHHhhcCCcEEEecCcCCHHHHH
Confidence 689999999943222222 23344445566777776642 2 11121111 1456788
Q ss_pred HHHHHHHHcCCCE
Q 026320 56 EYVEDCKQVGFDT 68 (240)
Q Consensus 56 ~yl~~~k~lGF~~ 68 (240)
.+++.+++.+...
T Consensus 132 ~~~~~~~~~~~~~ 144 (267)
T d1dqwa_ 132 GLKQAAEEVTKEP 144 (267)
T ss_dssp HHHHHHHHHCSSC
T ss_pred HHHHHhhccCCcc
Confidence 8888888876553
|
| >d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) species: Pseudomonas stutzeri [TaxId: 316]
Probab=86.02 E-value=0.57 Score=38.34 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Ccc------------cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNV----------GSL------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISd----------Gti------------~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.+=++++++|||++|.|+= |+- .+ +.++..+||+.++++|++|+-.+-.-
T Consensus 39 i~~kl~yl~~lGv~aIwl~P~~~~~~~~~~~~~~~~~hgY~~~dy~vd~~~Gt~~df~~LV~~aH~~GI~VIlD~V~N 116 (357)
T d1gcya2 39 LRQQAATIAADGFSAIWMPVPWRDFSSWSDGSKSGGGEGYFWHDFNKNGRYGSDAQLRQAASALGGAGVKVLYDVVPN 116 (357)
T ss_dssp HHHHHHHHHHTTCSEEEECCCSCCCCCBC---CCBCCSSTTCSSSCSCSSSCCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEeCcCeeCCccCCCCCCCCCCCCcChhhcccCccCCCHHHHHHHHHHHHhcCCeEEEEEecc
Confidence 44447899999999999982 100 11 24788999999999999999988774
|
| >d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: Hypothetical protein YgbM (EC1530) domain: Hypothetical protein YgbM (EC1530) species: Escherichia coli [TaxId: 562]
Probab=85.67 E-value=0.26 Score=38.34 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccc
Q 026320 53 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 99 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~ 99 (240)
.+++.++.++++||++||+.+- -+.+. .++-+.+++.|+++..
T Consensus 16 pl~e~i~~a~~~Gf~gIEl~~~-~~~~~---~~~~~~l~~~gl~~~~ 58 (260)
T d1k77a_ 16 PFIERFAAARKAGFDAVEFLFP-YNYST---LQIQKQLEQNHLTLAL 58 (260)
T ss_dssp CGGGHHHHHHHHTCSEEECSCC-TTSCH---HHHHHHHHHTTCEEEE
T ss_pred CHHHHHHHHHHhCCCEEEECCC-CCCCH---HHHHHHHHHCCCcEEE
Confidence 5788899999999999999743 23333 3566778888998654
|
| >d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-1,4-galactanase species: Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]
Probab=85.26 E-value=0.76 Score=37.34 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCCEEEe------cCCcccCChhHHHHHHHHHHHcCCcccceeeee
Q 026320 55 KEYVEDCKQVGFDTIEL------NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 55 ~~yl~~~k~lGF~~IEI------SdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
++.++..|+.||++|-| .+|.-.+. .-.+++++|+++||+|+-.++--
T Consensus 30 ~~~~~~lk~~G~n~VRi~vW~~p~~g~~~~~--~~~~~v~~a~~~gl~vil~~h~~ 83 (332)
T d1hjsa_ 30 QPLENILAANGVNTVRQRVWVNPADGNYNLD--YNIAIAKRAKAAGLGVYIDFHYS 83 (332)
T ss_dssp CCHHHHHHHTTCCEEEEEECSSCTTCTTSHH--HHHHHHHHHHHTTCEEEEEECCS
T ss_pred ccHHHHHHHcCCCEEEeeeeecCCCCccCHH--HHHHHHHHHHHCCCEEEEEecCC
Confidence 45778899999999999 67776544 44579999999999999888763
|
| >d1ud2a2 c.1.8.1 (A:1-390) Bacterial alpha-amylase {Bacillus sp., ksm-k38 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Bacterial alpha-amylase species: Bacillus sp., ksm-k38 [TaxId: 1409]
Probab=85.15 E-value=0.7 Score=37.18 Aligned_cols=46 Identities=13% Similarity=0.166 Sum_probs=36.1
Q ss_pred HHHHHHcCCCEEEecCCc--------------------------c--cC-ChhHHHHHHHHHHHcCCcccceeee
Q 026320 58 VEDCKQVGFDTIELNVGS--------------------------L--EI-PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 58 l~~~k~lGF~~IEISdGt--------------------------i--~l-~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
|+++|+||+++|++|==+ + .+ +.++..++|+.++++|++|+-.+-.
T Consensus 29 LdyLk~LGvt~I~l~Pi~~~~~~~~~gY~~~d~~~~~~~~~~~~vd~~~Gt~~efk~lV~~~H~~GI~VilDvV~ 103 (390)
T d1ud2a2 29 AAALSDAGITAIWIPPAYKGNSQADVGYGAYDLYDLGEFNQKGTVRTKYGTKAQLERAIGSLKSNDINVYGDVVM 103 (390)
T ss_dssp HHHHHHHTCCEEEECCCSEESSTTCCSSSEEETTCSSCSCBTTBSSCSSCCHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHcCCCEEEeCCCccCCCCCCCCCCccCCcccccccccCCcCCCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 567899999999996421 1 12 4578999999999999999888844
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=3.1 Score=33.85 Aligned_cols=145 Identities=10% Similarity=0.036 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHcCCCEEEecC--C-cccCChhHHHHHHHHHHHc-CCcccceeeeecCCCCCCCccccccccccccCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNV--G-SLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRS 128 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISd--G-ti~l~~~~r~~lI~~~~~~-G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~ 128 (240)
.+.++++++.+-|.+.+=+.- | +..|+.++|.++++.+.+. +=++..=+|+
T Consensus 23 ~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~------------------------- 77 (292)
T d2a6na1 23 SLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGT------------------------- 77 (292)
T ss_dssp HHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC-------------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeec-------------------------
Confidence 678889999999999988853 3 3469999999999988873 1011111111
Q ss_pred cccccCHHHHHHHHHHHHHcCCcEEEEecc-------------------------ccccCC----CCccHHHHHHHHhcc
Q 026320 129 TEYVEDVDLLIRRAERCLEAGADMIMIDSD-------------------------DVCKHA----DSLRADIIAKVIGRL 179 (240)
Q Consensus 129 ~~~~~~~~~~i~~~~~dLeAGA~~ViiEar-------------------------gi~d~~----g~~r~d~v~~i~~~~ 179 (240)
+..+..+.++.++..-++||+.+++=.- -+|+.- -.+..+.+.++. .+
T Consensus 78 --~~~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~~~~L~-~~ 154 (292)
T d2a6na1 78 --GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPETVGRLA-KV 154 (292)
T ss_dssp --CCSSHHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHHHHHHH-TS
T ss_pred --ccchHHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHHHHHHh-cC
Confidence 0124688999999999999999988542 136542 246778888775 35
Q ss_pred C-CCceEEecCCchhHHHHHHHhCCCcccccCCCCchhhhhhhCccCC
Q 026320 180 G-LEKTMFEATNPRTSEWFIRRYGPKVNLFVDHSQVMDLECLRGRNLG 226 (240)
Q Consensus 180 ~-~~~lifEAP~k~qQ~~~I~~fG~~VNLgI~~~dVl~LE~LR~~~~G 226 (240)
+ +-=+-...++..+...+++..++++.++...+ -.-++.++.|-.|
T Consensus 155 pnv~giK~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~G~~G 201 (292)
T d2a6na1 155 KNIIGIKEATGNLTRVNQIKELVSDDFVLLSGDD-ASALDFMQLGGHG 201 (292)
T ss_dssp TTEEEEEECSCCTTHHHHHHTTSCTTSEEEECCG-GGHHHHHHTTCCE
T ss_pred CCEEEEEeccCcchhhhhhhhhcCCccEEeecch-hhhhhHhhCCceE
Confidence 4 44455666788888888888888777664433 3446677655444
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.61 E-value=2.1 Score=34.97 Aligned_cols=75 Identities=20% Similarity=0.052 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHcCCCEEEecC---CcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCc
Q 026320 53 AFKEYVEDCKQVGFDTIELNV---GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 129 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISd---Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~ 129 (240)
.+.++++++-+-|.+.|=+.. =+..|+.++|.++++.+.+.--.+.+ |+ +
T Consensus 21 ~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~~i~--gv-------~------------------ 73 (293)
T d1w3ia_ 21 KLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNKIIF--QV-------G------------------ 73 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSCEEE--EC-------C------------------
T ss_pred HHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhcccccc--cc-------c------------------
Confidence 678889999899999988743 34589999999999998875322211 22 1
Q ss_pred ccccCHHHHHHHHHHHHHcCCcEEEEe
Q 026320 130 EYVEDVDLLIRRAERCLEAGADMIMID 156 (240)
Q Consensus 130 ~~~~~~~~~i~~~~~dLeAGA~~ViiE 156 (240)
..+.++.++.+++.-++||+.+++=
T Consensus 74 --~~st~~~i~~a~~a~~~Ga~~~~~~ 98 (293)
T d1w3ia_ 74 --GLNLDDAIRLAKLSKDFDIVGIASY 98 (293)
T ss_dssp --CSCHHHHHHHHHHGGGSCCSEEEEE
T ss_pred --cchhhhhhhhhhhhhhhcccccccc
Confidence 0136788999999999999999863
|
| >d1gjwa2 c.1.8.1 (A:1-572) Maltosyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Maltosyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=84.33 E-value=0.45 Score=41.75 Aligned_cols=48 Identities=23% Similarity=0.273 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCEEEecCCc--------------------ccC-------------ChhHHHHHHHHHHHcCCcccceee
Q 026320 56 EYVEDCKQVGFDTIELNVGS--------------------LEI-------------PEETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 56 ~yl~~~k~lGF~~IEISdGt--------------------i~l-------------~~~~r~~lI~~~~~~G~~v~~E~g 102 (240)
+=|+++|+||+++|+++==+ ..+ +.++..++|+.++++|++|+-.+-
T Consensus 124 ~kLdYLk~LGvtaI~L~Pi~~~~~~~~~~~~~~GY~~~dy~~~dp~~~~~~~~~~Gt~~dfk~lV~~~H~~GI~VIlDvV 203 (572)
T d1gjwa2 124 LLLPFVKSLGADAIYLLPVSRMSDLFKKGDAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFI 203 (572)
T ss_dssp HTHHHHHHHTCCEEEECCCEEECCSSCSSSSCCTTSEEEEEEECGGGSCGGGTTSCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HhhHHHHHcCCCEEEeCCcccCccccCCCCCCCCCCccCCCCCCcccccccccCCCCHHHHHHHHHHHHhcCcEEEEEee
Confidence 34678899999999996200 111 136889999999999999998875
Q ss_pred e
Q 026320 103 V 103 (240)
Q Consensus 103 ~ 103 (240)
.
T Consensus 204 ~ 204 (572)
T d1gjwa2 204 P 204 (572)
T ss_dssp T
T ss_pred e
Confidence 5
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=84.14 E-value=3.6 Score=34.29 Aligned_cols=108 Identities=15% Similarity=0.168 Sum_probs=78.0
Q ss_pred HHHH-HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccc
Q 026320 54 FKEY-VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYV 132 (240)
Q Consensus 54 ~~~y-l~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~ 132 (240)
+++| +.+++.+|=|+|=+--..+ +.++..++++.+++.||.|+.|++-
T Consensus 118 id~~QI~ear~~GADavLLI~~~L--~~~~l~~l~~~a~~lgl~~LVEvh~----------------------------- 166 (254)
T d1piia2 118 IDPYQIYLARYYQADACLLMLSVL--DDDQYRQLAAVAHSLEMGVLTEVSN----------------------------- 166 (254)
T ss_dssp CSHHHHHHHHHTTCSEEEEETTTC--CHHHHHHHHHHHHHTTCEEEEEECS-----------------------------
T ss_pred CcHHHHHHHHhhccchhhhhHhhh--cccHHHHHHHHHHHHhhhHHHhhcc-----------------------------
Confidence 3444 6789999999999887766 6788889999999999999999876
Q ss_pred cCHHHHHHHHHHHHHcCCcEEEEeccccccCCCCccHHHHHHHHhccCCCce-EEecCCc-hhHHHHHHH
Q 026320 133 EDVDLLIRRAERCLEAGADMIMIDSDDVCKHADSLRADIIAKVIGRLGLEKT-MFEATNP-RTSEWFIRR 200 (240)
Q Consensus 133 ~~~~~~i~~~~~dLeAGA~~ViiEargi~d~~g~~r~d~v~~i~~~~~~~~l-ifEAP~k-~qQ~~~I~~ 200 (240)
-+.+++.+++||..|-|=.|.+-. =++.-+...+++..+|-+.+ +-|.=-+ ..+..+++.
T Consensus 167 ------~~El~~a~~~~a~iIGINnRnL~t--f~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~~ 228 (254)
T d1piia2 167 ------EEEQERAIALGAKVVGINNRDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSH 228 (254)
T ss_dssp ------HHHHHHHHHTTCSEEEEESEETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTT
T ss_pred ------HHHHHHHHhhcccccCccccchhh--hhhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHHHc
Confidence 355677889999999999996621 22234455667777775554 4465432 334555544
|
| >d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: Beta-mannanase species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=83.98 E-value=0.84 Score=36.79 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=39.6
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccC--------------ChhHHHHHHHHHHHcCCcccceeee
Q 026320 52 SAFKEYVEDCKQVGFDTIELNVGSLEI--------------PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEISdGti~l--------------~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
..+++.++.+|++||++|-+.-..... ..+...++++.|.++|++|+.++..
T Consensus 39 ~~~~~~l~~~k~~G~N~vR~~~~~~~~~~~~~~~~g~~~~~~l~~ld~~l~~a~~~Gi~vi~~l~~ 104 (370)
T d1rh9a1 39 IKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVN 104 (370)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCSSSSSCSEEETTEECHHHHHHHHHHHHHHHHTTCEEEEECCB
T ss_pred HHHHHHHHHHHHCCCeEEEECCccCccCcccCCCCCcccHHHHHHHHHHHHHHHHcCCEEEEeccc
Confidence 368999999999999999984322211 1233457899999999999998874
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=83.75 E-value=3.8 Score=33.99 Aligned_cols=115 Identities=17% Similarity=0.203 Sum_probs=74.7
Q ss_pred ccChhHHHHHHHHHHhCCceecC-C--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------------cCCh
Q 026320 17 LMPKPFIEEVVKRAHQHDVYVST-G--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------------EIPE 80 (240)
Q Consensus 17 l~p~~~l~eKi~l~~~~gV~v~~-G--tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti-------------~l~~ 80 (240)
+.-.+.+..-=.+++.-++++.- + ||-+. ..+.+-++...+.|.-.|=|-|.+. .++.
T Consensus 59 lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~------~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~ 132 (275)
T d1s2wa_ 59 ASWTQVVEVLEFMSDASDVPILLDADTGYGNF------NNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADI 132 (275)
T ss_dssp --CHHHHHHHHHHHHTCSSCEEEECCSSCSSH------HHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCH
T ss_pred cchhhHHHHHHhhhcccCCceeEecccccccc------hHHHHHHHHHHHhccceeEeeccccccccccccccccccccH
Confidence 34445566666778888888773 1 34322 2455667777889999999999643 5778
Q ss_pred hHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc
Q 026320 81 ETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD 158 (240)
Q Consensus 81 ~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar 158 (240)
++...-|+.+++.-. -++|-+-- .-|. . +. ....++.|+++++..+||||.|.+|+.
T Consensus 133 ~~~~~ki~aa~~~~~--~~~~~i~A-------RtDa----~-----~~---~~gl~eai~R~~aY~eAGAD~vf~~~~ 189 (275)
T d1s2wa_ 133 EEFALKIKACKDSQT--DPDFCIVA-------RVEA----F-----IA---GWGLDEALKRAEAYRNAGADAILMHSK 189 (275)
T ss_dssp HHHHHHHHHHHHHCS--STTCEEEE-------EECT----T-----TT---TCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHhhhhhcc--CcceeEEe-------cchh----h-----hh---cCCHHHHHHHHHHHHhcCCCeeeeccc
Confidence 888888887776421 12333310 1111 0 10 124789999999999999999999985
|
| >d1tg7a5 c.1.8.14 (A:41-394) Beta-galactosidase LacA, N-terminal domain {Penicillium sp. [TaxId: 5081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Glycosyl hydrolases family 35 catalytic domain domain: Beta-galactosidase LacA, N-terminal domain species: Penicillium sp. [TaxId: 5081]
Probab=83.61 E-value=0.49 Score=40.31 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHcCCCEEEe---------cCCcccCCh-hHHHHHHHHHHHcCCcccceeee
Q 026320 52 SAFKEYVEDCKQVGFDTIEL---------NVGSLEIPE-ETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI---------SdGti~l~~-~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
+..++-++.+|++||++|.+ ..|..+.+. .+-.++|+.++++|++|+-++|.
T Consensus 36 ~~w~~~l~~mk~~G~n~vr~~~~W~~~ep~~g~~df~~~~~l~~~l~~a~~~Gl~vil~~g~ 97 (354)
T d1tg7a5 36 SLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGP 97 (354)
T ss_dssp GGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccCCCCCcccccchhhHHHHHHHHHHcCCEEEEcCCC
Confidence 46788899999999999998 355555542 23457999999999999988874
|
| >d1qhoa4 c.1.8.1 (A:1-407) Cyclodextrin glycosyltransferase {Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Cyclodextrin glycosyltransferase species: Bacillus stearothermophilus, maltogenic alpha-amylase [TaxId: 1422]
Probab=83.58 E-value=0.63 Score=39.28 Aligned_cols=46 Identities=28% Similarity=0.265 Sum_probs=35.4
Q ss_pred HHHHHHcCCCEEEecC-----------------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeee
Q 026320 58 VEDCKQVGFDTIELNV-----------------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAV 103 (240)
Q Consensus 58 l~~~k~lGF~~IEISd-----------------Gti-----~l-----~~~~r~~lI~~~~~~G~~v~~E~g~ 103 (240)
|+++|+|||++|+++= |.- .+ +.++..+||+.++++|++|+-.+-.
T Consensus 58 Ldyl~~LGv~~I~L~Pi~~~~~~~~~~~~~~~~gY~~~d~~~id~~~Gt~~d~k~Lv~~~H~~Gi~VilD~V~ 130 (407)
T d1qhoa4 58 LPYLKQLGVTTIWLSPVLDNLDTLAGTDNTGYHGYWTRDFKQIEEHFGNWTTFDTLVNDAHQNGIKVIVDFVP 130 (407)
T ss_dssp HHHHHHHTCCEEEECCCEEECSSCSSTTCCCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred HHHHHHcCCCEEEeCccccCCcccCCCCCCCCCceeeeecCCCCCCCCCHHHHHHHHHHhhhcccceeecccc
Confidence 5678999999999962 111 11 3578999999999999999987644
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.53 E-value=2.6 Score=35.36 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=61.9
Q ss_pred HHHHHHcCCCEEEecC----------CcccCChhHHHHHHHHHHHcCCcccceeeeecCC--CCCCCccccccccccccC
Q 026320 58 VEDCKQVGFDTIELNV----------GSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK--SDIPSDRDRAFGAYVARA 125 (240)
Q Consensus 58 l~~~k~lGF~~IEISd----------Gti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~--~evg~~~d~~~~~~~~~~ 125 (240)
-+.|.+.|+|.|=|-| .|++++.++.....+.+++ |.++.. .+.| |+.+.
T Consensus 30 A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~r---------ga~~~~iv~DmP------f~s~~--- 91 (262)
T d1oy0a_ 30 ARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVR---------GAPHALVVADLP------FGSYE--- 91 (262)
T ss_dssp HHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHH---------HCTTSEEEEECC------TTSST---
T ss_pred HHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHh---------ccccceeEecch------hhhcc---
Confidence 3456778999999964 6889999998887776666 222211 1111 22221
Q ss_pred CCCcccccCHHHHHHHHHHHH-HcCCcEEEEeccccccCCCCccHHHHHHHH-hccC
Q 026320 126 PRSTEYVEDVDLLIRRAERCL-EAGADMIMIDSDDVCKHADSLRADIIAKVI-GRLG 180 (240)
Q Consensus 126 ~~~~~~~~~~~~~i~~~~~dL-eAGA~~ViiEargi~d~~g~~r~d~v~~i~-~~~~ 180 (240)
.++++.++.+.+.+ ++||+.|-+|+. ....+.|+.|. +.+|
T Consensus 92 -------~s~~~a~~nA~r~~~~~ga~avkleg~-------~~~~~~I~~L~~~gIP 134 (262)
T d1oy0a_ 92 -------AGPTAALAAATRFLKDGGAHAVKLEGG-------ERVAEQIACLTAAGIP 134 (262)
T ss_dssp -------TCHHHHHHHHHHHHHTTCCSEEEEEBS-------GGGHHHHHHHHHHTCC
T ss_pred -------cchHHHHHHHHHHHhccccceeeechh-------hhhHHHHHHHHhcCCc
Confidence 25789999999988 799999999984 45566677666 3344
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.25 E-value=2.2 Score=33.64 Aligned_cols=146 Identities=11% Similarity=0.078 Sum_probs=82.3
Q ss_pred CCCcccEEEecCccccccChhHHHHHHHHHHhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 026320 1 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 79 (240)
Q Consensus 1 ~g~yID~lKfg~GTs~l~p~~~l~eKi~l~~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~ 79 (240)
+++|||++|+|..-..=+..+.+++ +.++++.++..- =+..+ |+-...|.+.+.++|+|.+-|+- ..+
T Consensus 24 ~~~~v~~iKig~~l~~~~G~~~v~~---l~~~~~~~i~~D~K~~DI-----g~t~~~~~~~~~~~gad~~TVh~---~~g 92 (212)
T d1km4a_ 24 VREYIDTVKIGYPLVLSEGMDIIAE---FRKRFGCRIIADFAVADI-----PETNEKICRATFKAGADAIIVHG---FPG 92 (212)
T ss_dssp HTTTCSEEEEEHHHHHHHCTHHHHH---HHHHHCCEEEEEEEECSC-----HHHHHHHHHHHHHTTCSEEEEES---TTC
T ss_pred hCCCCcEEEECHHHHHhcCHHHHHH---HHHhcccceehhhhhhcc-----ccHHHHhHhhhccccccEEEEec---cCC
Confidence 3789999999854444344444543 456677665531 12221 12345666667789999999983 455
Q ss_pred hhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEeccc
Q 026320 80 EETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDD 159 (240)
Q Consensus 80 ~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarg 159 (240)
.+....+++.+++.|..+.- +.. .+.. +.. .. ......+..+...++|.+-++.
T Consensus 93 ~~~i~~~~~~a~~~~~~~~~-l~~---~s~~----~~~----~~----------~~~~~~~~~~~~~~~g~~g~v~---- 146 (212)
T d1km4a_ 93 ADSVRACLNVAEEMGREVFL-LTE---MSHP----GAE----MF----------IQGAADEIARMGVDLGVKNYVG---- 146 (212)
T ss_dssp HHHHHHHHHHHHHHTCEEEE-ECS---CSSG----GGG----TT----------HHHHHHHHHHHHHHHTCCEEEC----
T ss_pred hHHHHHHHHHHHhcCCcccc-chh---hcch----hhh----hh----------hhhHHHHHHHHHHHhCCccccc----
Confidence 66677778877777655332 111 1111 000 00 0122233445556778775542
Q ss_pred cccCCCCccHHHHHHHHhccCCCceEEecC
Q 026320 160 VCKHADSLRADIIAKVIGRLGLEKTMFEAT 189 (240)
Q Consensus 160 i~d~~g~~r~d~v~~i~~~~~~~~lifEAP 189 (240)
+.+..+.+..+-+..+.+.+++ +|
T Consensus 147 -----~~~~~~~i~~ir~~~~~~~~~v-tp 170 (212)
T d1km4a_ 147 -----PSTRPERLSRLREIIGQDSFLI-SP 170 (212)
T ss_dssp -----CTTCHHHHHHHHHHHCSSSEEE-EC
T ss_pred -----cccCHHHHhhhhhccCCceeEE-cC
Confidence 5566777777766666666665 44
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=82.73 E-value=0.33 Score=40.81 Aligned_cols=148 Identities=13% Similarity=0.119 Sum_probs=90.4
Q ss_pred HhCCceecCC-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh----HHHHHHHHHHHcCCcccceeeeec
Q 026320 31 HQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE----TLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 31 ~~~gV~v~~G-tl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~----~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
|+.||-+||+ .++| .-.+|++.++++||+.|=-|==..+-+.+ ...++++.|++.||+|+..+..+-
T Consensus 3 ~~LGiSvY~~~~~~e--------~~~~yi~~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~ 74 (244)
T d1x7fa2 3 RKLGISLYPEHSTKE--------KDMAYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAV 74 (244)
T ss_dssp CEEEEEECGGGSCHH--------HHHHHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred ceeEEEEccCCCCHH--------HHHHHHHHHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHH
Confidence 4567888887 4554 44689999999999998765433333333 245889999999999988877643
Q ss_pred CCCCCCCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecc--------------c--cccCCCCccH
Q 026320 106 NKSDIPSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSD--------------D--VCKHADSLRA 169 (240)
Q Consensus 106 ~~~evg~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar--------------g--i~d~~g~~r~ 169 (240)
....|..- .|+ ...-+.|++-+-++-- | |.-|..+. +
T Consensus 75 -l~~lg~s~------------------~dl-------~~~~~lGi~glRlD~Gf~~~e~a~ms~n~~~l~I~LNaSt~-t 127 (244)
T d1x7fa2 75 -FDQLGISY------------------SDL-------SFFAELGADGIRLDVGFDGLTEAKMTNNPYGLKIELNVSND-I 127 (244)
T ss_dssp -C------C------------------CCT-------HHHHHHTCSEEEESSCCSSHHHHHHTTCTTCCEEEEETTSC-S
T ss_pred -HHHhCCCH------------------HHH-------HHHHHCCCCEEEEcCCCChHHHHHHhcCCcCCEEEEECCcC-H
Confidence 22222110 021 2234669988888731 2 23344444 3
Q ss_pred HHHHHHHhccC-CCceEEe---cCCch---------hHHHHHHHhCCCcccccCCCC
Q 026320 170 DIIAKVIGRLG-LEKTMFE---ATNPR---------TSEWFIRRYGPKVNLFVDHSQ 213 (240)
Q Consensus 170 d~v~~i~~~~~-~~~lifE---AP~k~---------qQ~~~I~~fG~~VNLgI~~~d 213 (240)
+.++++++.-+ .++|+-= =|+|. ++..+++++|.+|=-||+-..
T Consensus 128 ~~l~~l~~~~~n~~~l~acHNFYPr~~TGLs~~~f~~~n~~~k~~gi~t~AFI~g~~ 184 (244)
T d1x7fa2 128 AYLENILSHQANKSALIGCHNFYPQKFTGLPYDYFIRCSERFKKHGIRSAAFITSHV 184 (244)
T ss_dssp SHHHHHTTSSCCGGGEEEECCCBCSTTCSBCHHHHHHHHHHHHHTTCCCEEEECCSS
T ss_pred HHHHHHHHcCCChhheEEeeccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 56888875433 6665421 04443 488899999999855587654
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=82.30 E-value=1.9 Score=34.99 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceeeeecCCCCCCCccccccccccccCCCCcc
Q 026320 51 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTE 130 (240)
Q Consensus 51 ~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g~k~~~~evg~~~d~~~~~~~~~~~~~~~ 130 (240)
++...+..+.+.+-|+++|||.-- .+...+.|+.++++ .|++-+ |+ |..++
T Consensus 26 ~~~a~~~~~al~~~Gi~~iEitl~-----tp~a~~~I~~l~~~----~p~~~v-------Ga------GTV~~------- 76 (213)
T d1wbha1 26 LEHAVPMAKALVAGGVRVLNVTLR-----TECAVDAIRAIAKE----VPEAIV-------GA------GTVLN------- 76 (213)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEESC-----STTHHHHHHHHHHH----CTTSEE-------EE------ESCCS-------
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCC-----ChhHHHHHHHHHHH----CCCCee-------ec------ccccc-------
Confidence 346778889999999999999653 35668899988874 133322 10 22222
Q ss_pred cccCHHHHHHHHHHHHHcCCcEEEEec
Q 026320 131 YVEDVDLLIRRAERCLEAGADMIMIDS 157 (240)
Q Consensus 131 ~~~~~~~~i~~~~~dLeAGA~~ViiEa 157 (240)
.+++++.++|||++++-=+
T Consensus 77 --------~~~~~~a~~aGa~FivSP~ 95 (213)
T d1wbha1 77 --------PQQLAEVTEAGAQFAISPG 95 (213)
T ss_dssp --------HHHHHHHHHHTCSCEEESS
T ss_pred --------HHHHHHHHHCCCcEEECCC
Confidence 6788899999999999766
|
| >d1m7xa3 c.1.8.1 (A:227-622) 1,4-alpha-glucan branching enzyme, central domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: 1,4-alpha-glucan branching enzyme, central domain species: Escherichia coli [TaxId: 562]
Probab=82.23 E-value=0.87 Score=36.79 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCEEEecC----------Ccc-----cC-----ChhHHHHHHHHHHHcCCcccceeeee
Q 026320 54 FKEYVEDCKQVGFDTIELNV----------GSL-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISd----------Gti-----~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+++.+.++++|||++|.+|= |.- .+ +.++..+||+.|+++|++|+-.+-..
T Consensus 43 ~~klidyl~~LGv~~iwl~Pi~~~~~~~~hGY~~~d~~~vdp~~Gt~~d~~~LV~~aH~~gi~VilD~V~N 113 (396)
T d1m7xa3 43 ADQLVPYAKWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVILDWVPG 113 (396)
T ss_dssp HHHHHHHHHHTTCSEEEESCCEECSCGGGTTSSCSEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcCcCcCCCcCcccCCHHHHHHHHHHHhhhhhhhhhccccc
Confidence 45556888999999999973 111 11 35788999999999999998877664
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=81.24 E-value=4.3 Score=33.71 Aligned_cols=62 Identities=16% Similarity=0.285 Sum_probs=50.3
Q ss_pred CceecCCcHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHcCCcccceee
Q 026320 34 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 102 (240)
Q Consensus 34 gV~v~~Gtl~E~a~~qg~~~~~~yl~~~k~lGF~~IEISdGti~l~~~~r~~lI~~~~~~G~~v~~E~g 102 (240)
.+++..=|+.-..+..| +++|++.|++.|++.+-|=| +|.++-..+.+.++++|+..++=+.
T Consensus 94 ~~pivlm~Y~N~i~~~G---~~~f~~~~~~~Gv~GliipD----lP~ee~~~~~~~~~~~~l~~I~lva 155 (267)
T d1qopa_ 94 TIPIGLLMYANLVFNNG---IDAFYARCEQVGVDSVLVAD----VPVEESAPFRQAALRHNIAPIFICP 155 (267)
T ss_dssp SSCEEEEECHHHHHTTC---HHHHHHHHHHHTCCEEEETT----CCGGGCHHHHHHHHHTTCEEECEEC
T ss_pred ccceEEEeeccchhhcC---chHHHHHHHhcCCCceeccc----hhhhhhHHHHHhhhccCceEEEEec
Confidence 45666667777777775 89999999999999999976 8888888899999999888666443
|
| >d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: beta-glycanases domain: endo-1,4-beta-mannosidase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=80.86 E-value=1.1 Score=35.30 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHcCCCEEEe---cCCcc-----------cCC---hhHHHHHHHHHHHcCCcccceeeee
Q 026320 52 SAFKEYVEDCKQVGFDTIEL---NVGSL-----------EIP---EETLLRYVRLVKSAGLKAKPKFAVM 104 (240)
Q Consensus 52 ~~~~~yl~~~k~lGF~~IEI---SdGti-----------~l~---~~~r~~lI~~~~~~G~~v~~E~g~k 104 (240)
+.+++.++.++++||++|-| +++.. .++ .+...++|+.|.++|++|+..+.-.
T Consensus 42 ~~~~~~l~~~~~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~gi~vi~d~~~~ 111 (350)
T d2c0ha1 42 STFESTLSDMQSHGGNSVRVWLHIEGESTPEFDNNGYVTGIDNTLISDMRAYLHAAQRHNILIFFTLWNG 111 (350)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEECCTTHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEECcccCccCCcccccCCCCCccChhhhHHHHHHHHHHHHCCCEEEEEeccc
Confidence 47899999999999999998 33221 111 2445679999999999999988764
|
| >d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella sp., lx3 [TaxId: 576]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Amylase, catalytic domain domain: Isomaltulose synthase PalI species: Klebsiella sp., lx3 [TaxId: 576]
Probab=80.52 E-value=1.1 Score=38.18 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCc--------------ccC-----ChhHHHHHHHHHHHcCCcccceeeeec
Q 026320 54 FKEYVEDCKQVGFDTIELNVGS--------------LEI-----PEETLLRYVRLVKSAGLKAKPKFAVMF 105 (240)
Q Consensus 54 ~~~yl~~~k~lGF~~IEISdGt--------------i~l-----~~~~r~~lI~~~~~~G~~v~~E~g~k~ 105 (240)
+.+=|+++|+||+++|+++==+ ..+ +.++..+||+.++++|++|+-.+-..+
T Consensus 33 i~~kLdyLk~LGv~~I~L~Pi~~~~~~~~GY~~~d~~~vd~~~Gt~~df~~Lv~~aH~~Gi~VilD~V~NH 103 (478)
T d1m53a2 33 IIEKLDYLKSLGIDAIWINPHYDSPNTDNGYDISNYRQIMKEYGTMEDFDSLVAEMKKRNMRLMIDVVINH 103 (478)
T ss_dssp HHHTHHHHHHHTCCEEEECCCEECCCTTTTSSCSEEEEECGGGCCHHHHHHHHHHHHHTTCEEEEEECCSB
T ss_pred HHHhhHHHHHcCCCEEEECCCCCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEEecccccc
Confidence 3344678899999999997211 111 467899999999999999999887643
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=80.51 E-value=12 Score=31.29 Aligned_cols=87 Identities=29% Similarity=0.332 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHcCCCEEEecC--Ccc----------------cCChhHHHHH----HHHHHHcCCcccceeeeecCCCCC
Q 026320 53 AFKEYVEDCKQVGFDTIELNV--GSL----------------EIPEETLLRY----VRLVKSAGLKAKPKFAVMFNKSDI 110 (240)
Q Consensus 53 ~~~~yl~~~k~lGF~~IEISd--Gti----------------~l~~~~r~~l----I~~~~~~G~~v~~E~g~k~~~~ev 110 (240)
.|-+--..|++.|||.|||.- |.+ -=+.+.|+|+ |+.+++.. -..++++...++.
T Consensus 144 ~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~---~~~~~vr~~~~~~ 220 (337)
T d1z41a1 144 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW---DGPLFVRVSASDY 220 (337)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC---CSCEEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhh---cccceEEeccccc
Confidence 344444567789999999954 333 1123566555 44554432 2334554432211
Q ss_pred CCccccccccccccCCCCcccccCHHHHHHHHHHHHHcCCcEEEEecccc
Q 026320 111 PSDRDRAFGAYVARAPRSTEYVEDVDLLIRRAERCLEAGADMIMIDSDDV 160 (240)
Q Consensus 111 g~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEargi 160 (240)
- ++-.+.++.++.++.--++|.+++-+-+...
T Consensus 221 ~------------------~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~ 252 (337)
T d1z41a1 221 T------------------DKGLDIADHIGFAKWMKEQGVDLIDCSSGAL 252 (337)
T ss_dssp S------------------TTSCCHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred c------------------cCccchhhhHHHHHHHHHcCCcccccccccc
Confidence 0 1123678899999999999999998866533
|