Citrus Sinensis ID: 026327

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWWLSLFFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccccEEEccccccccEEccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccEEEEEccccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHcccccccccHcccccEcHHHHHHHccEEEEcccccccccccHHHcccccccccEEEEEcccccHHHHHHHHHccHcccccEEEEcccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHcccccHHccccccccccccEEEEEEEEEEEcccccccEEEEEEccccccccccHHHHHHHHHc
Coil and Loop (DISEMBL)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAgdnlvskcptwswesgepskrksylpadkqflITRNVPCLRRAASVEeeyegaggeilvdnedndgwlathgkpkakcdededdnlpsmeAVEISKNNNVRAIStyfggeeeeeedipdmaeynepdsiienetdpatlpstylvahepdddnilrtrtydisitydkyyqtprvwltgydevsyLDLHLSWWLSLFFL
Flexible Loop (DISEMBL)
melqqkfygifkgtvekitshrtvsafkekgVLSVSEFVLAGdnlvskcptwswesgepskrksylpadkqflitrnVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMeaveisknnnvRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLvahepdddnilrtrtydisitydkyyqtprVWLTGYDEVSYLDLHLSWWLSLFFL
Low Complexity Region (SEG)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGeeeeeeDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYldlhlswwlslffl
Disordered region (IsUnstruct)
*****KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWE*********YLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNE**DGWL*************************************************************************TYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWWLSLFF*
Disordered Region (DISOPRED)
*******YGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATH*********************************************IPDMAEYNEPDSIIENETDPATLPSTY*********NILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWWLSLFFL
Disordered Region (DISEMBL)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTW***********SYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFG********IPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWWLSLFFL
Disordered Region (DISPRO)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATH*********************************************************************STYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWWLSLFFL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWWLSLFFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q0WWQ1	313	Autophagy-related protein	yes	no	0.920	0.706	0.762	1e-97
Q550A8	338	Autophagy-related protein	yes	no	0.904	0.642	0.404	5e-37
Q6PFS7	317	Ubiquitin-like-conjugatin	yes	no	0.829	0.627	0.426	4e-33
Q5I0S6	312	Ubiquitin-like-conjugatin	yes	no	0.804	0.618	0.398	2e-32
Q6GQE7	313	Ubiquitin-like-conjugatin	N/A	no	0.866	0.664	0.385	4e-32
Q9CPX6	314	Ubiquitin-like-conjugatin	yes	no	0.795	0.608	0.424	9e-32
Q0VCL3	314	Ubiquitin-like-conjugatin	yes	no	0.791	0.605	0.427	7e-31
Q9NT62	314	Ubiquitin-like-conjugatin	yes	no	0.779	0.595	0.411	1e-30
Q6AZ50	314	Ubiquitin-like-conjugatin	yes	no	0.783	0.598	0.423	2e-29
P0CM34	385	Autophagy-related protein	yes	no	0.820	0.511	0.375	1e-27

>sp|Q0WWQ1|ATG3_ARATH Autophagy-related protein 3 OS=Arabidopsis thaliana GN=ATG3 PE=1 SV=2

 Score =  355 bits (911), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 173/227 (76%), Positives = 198/227 (87%), Gaps = 6/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRML 221

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of ATG8. This step is required for the membrane association of ATG8. The formation of the ATG8-phosphatidylethanolamine conjugate is essential for autophagy and for the cytoplasm to vacuole transport (Cvt).
Arabidopsis thaliana (taxid: 3702)

>sp|Q550A8|ATG3_DICDI Autophagy-related protein 3 OS=Dictyostelium discoideum GN=atg3 PE=3 SV=3

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/247 (40%), Positives = 133/247 (53%), Gaps = 30/247 (12%)

Query: 3   LQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKR 62
            QQ  +  +  TVEK+T   + S F E+GVL+  EFV AGD L  KC TW+WESG+PS+ 
Sbjct: 5   FQQAVHKAYVKTVEKVTPTLSTSKFLEEGVLTPEEFVQAGDLLTDKCQTWTWESGDPSRN 64

Query: 63  KSYLPADKQFLITRNVPCLRRAASVEEEYEGAGG-EILVDNEDNDGWLATHGKPKAKCDE 121
            SYLP +KQFL+TRNVPC  R  ++E E + +   EI ++++  D W+A   +P    D+
Sbjct: 65  VSYLPKEKQFLLTRNVPCYNRVRTLENESKASKADEIQIEDDGEDSWVA--PQPVGNQDD 122

Query: 122 DEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYN----------EPDSII 171
            ED+ +  + +++I         +T          +  D  E            + D+II
Sbjct: 123 IEDEKV-DISSLKIDDKKPNTTTTTTAKPTNNNNNNNDDEDEDEDGDIPDLDDFQDDNII 181

Query: 172 ENETDPATLPSTYLVAHEP---------------DDDNILRTRTYDISITYDKYYQTPRV 216
           E E DPA L                         D+DNILRTRTYDISITYDKYYQTPRV
Sbjct: 182 EEE-DPAVLSKNNKTTTTTTANNNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRV 240

Query: 217 WLTGYDE 223
           WL GYDE
Sbjct: 241 WLFGYDE 247

E2 conjugating enzyme responsible for the E2-like covalent binding of phosphatidylethanolamine to the C-terminal Gly of atg8. This step is required for the membrane association of atg8. The formation of the atg8-phosphatidylethanolamine conjugate is essential for autophagy.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6PFS7|ATG3_DANRE Ubiquitin-like-conjugating enzyme ATG3 OS=Danio rerio GN=atg3 PE=2 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/232 (42%), Positives = 126/232 (54%), Gaps = 33/232 (14%)

Query: 9   GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPA 68
           G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP 
Sbjct: 10  GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPN 69

Query: 69  DKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDND-GWLAT-HGKPKAKCDE----- 121
           DKQFL+TRNVPC +R   +E   E    E +++ +D D GW+ T H        E     
Sbjct: 70  DKQFLLTRNVPCYKRCKQMEYSDE---LEAIIEEDDGDGGWVDTFHNSGVTGVTEAVREI 126

Query: 122 --DEDDNLPSMEAVEISKNNNVR--AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDP 177
             D  DN+          N NV+  A       +++EE +  DM EY E   +   ETD 
Sbjct: 127 SLDNKDNM----------NMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDD 173

Query: 178 ATLPSTYLV------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
           ATL ++ +       A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct: 174 ATLDTSKMADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 225

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5I0S6|ATG3_XENTR Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus tropicalis GN=atg3 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/201 (39%), Positives = 114/201 (56%), Gaps = 8/201 (3%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRA 143
             +  EY      I+ +++ + GW+ T H       +  ++  L + +  + + N  V  
Sbjct: 86  KQM--EYSDEQEAIIEEDDGDGGWVDTFHHSLTGVTEAVKEITLETQDCGKTTSNIAVDD 143

Query: 144 ISTYFGGEEEEEEDIPDMAEYNEPDSIIE-NETDPATLPSTYLVAHEPDDDNILRTRTYD 202
                 GE  + ED  +    +  D+ ++ ++   A  P   L      +D IL+TRTYD
Sbjct: 144 DDDDDEGEAADMEDYEESGLLDNDDATVDTSKIKEACKPKADLGG----EDAILQTRTYD 199

Query: 203 ISITYDKYYQTPRVWLTGYDE 223
           + ITYDKYYQTPR+WL GYDE
Sbjct: 200 LYITYDKYYQTPRLWLFGYDE 220

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GQE7|ATG3_XENLA Ubiquitin-like-conjugating enzyme ATG3 OS=Xenopus laevis GN=atg3 PE=2 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 127/231 (54%), Gaps = 23/231 (9%)

Query: 5   QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           Q  +   KG   ++  + T     S FKE GV++  EF+ AGD+LV  CPTW W +GE S
Sbjct: 2   QNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEES 61

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLAT--HGKPKAK 118
           K K YLP DKQFL+T+NVPC +R   +  EY      I+ +++ + GW+ T  H      
Sbjct: 62  KIKPYLPNDKQFLMTKNVPCYKRCKQM--EYSDEQEAIIEEDDGDGGWVDTFHHTGLSGV 119

Query: 119 CDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPA 178
            +  ++  L + +  + + N  V        GE        DM +Y E   ++EN  D A
Sbjct: 120 TEAVKEITLETQDCGKTTDNIAVCDDDDDDEGE------AADMEDYEE-SGLLEN--DDA 170

Query: 179 TLPSTYLV-AHEPD-----DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
           T+ ++ +  A +P      +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct: 171 TVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 221

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of atg8-like proteins (gabarap, gabarapl1, gabarapl2 or map1lc3a) to phosphatidylethanolamine (PE). PE-conjugation to atg8-like proteins is essential for autophagy. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of atg12 to itself, atg12 conjugation to atg3 playing a role in mitochondrial homeostasis but not in autophagy.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CPX6|ATG3_MOUSE Ubiquitin-like-conjugating enzyme ATG3 OS=Mus musculus GN=Atg3 PE=1 SV=1

 Score =  137 bits (344), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 119/205 (58%), Gaps = 14/205 (6%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAI 144
             +  EY      I+ +++ + GW+ T+         +    + ++E+ +  K  +  A+
Sbjct: 86  KQM--EYSDELEAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKDSIKLQDCSAL 142

Query: 145 STYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILRT 198
                 E+E E    DM EY E   +   ETD ATL +  +V      A    +D IL+T
Sbjct: 143 CDEEDEEDEGEAA--DMEEYEESGLL---ETDEATLDTRKIVEACKAKADAGGEDAILQT 197

Query: 199 RTYDISITYDKYYQTPRVWLTGYDE 223
           RTYD+ ITYDKYYQTPR+WL GYDE
Sbjct: 198 RTYDLYITYDKYYQTPRLWLFGYDE 222

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VCL3|ATG3_BOVIN Ubiquitin-like-conjugating enzyme ATG3 OS=Bos taurus GN=ATG3 PE=2 SV=1

 Score =  134 bits (336), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 16/206 (7%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVRA 143
             +  EY      I+ +++ + GW+ T H    A   E   +   ++E+ +  K  +  A
Sbjct: 86  KQM--EYSDELEAIIEEDDGDGGWVDTYHNTGIAGITEAVKEI--TLESKDSIKLQDCSA 141

Query: 144 ISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNILR 197
           +      E+E E    DM EY E   +   ETD ATL +  +V           +D IL+
Sbjct: 142 LCEEEEEEDEGEAA--DMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDAILQ 196

Query: 198 TRTYDISITYDKYYQTPRVWLTGYDE 223
           TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct: 197 TRTYDLYITYDKYYQTPRLWLFGYDE 222

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9NT62|ATG3_HUMAN Ubiquitin-like-conjugating enzyme ATG3 OS=Homo sapiens GN=ATG3 PE=1 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/209 (41%), Positives = 119/209 (56%), Gaps = 22/209 (10%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDNDGWLAT-HGKPKAKCDEDEDDNLPSMEAVEISKNNNVR- 142
             +  EY      I+ +++ + GW+ T H        E       +++ + +   +N+R 
Sbjct: 86  KQM--EYSDELEAIIEEDDGDGGWVDTYHNTGITGITE-------AVKEITLENKDNIRL 136

Query: 143 --AISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDN 194
               +     E+E+E +  DM EY E   +   ETD ATL +  +V           +D 
Sbjct: 137 QDCSALCEEEEDEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTDAGGEDA 193

Query: 195 ILRTRTYDISITYDKYYQTPRVWLTGYDE 223
           IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct: 194 ILQTRTYDLYITYDKYYQTPRLWLFGYDE 222

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6AZ50|ATG3_RAT Ubiquitin-like-conjugating enzyme ATG3 OS=Rattus norvegicus GN=Atg3 PE=2 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/208 (42%), Positives = 121/208 (58%), Gaps = 20/208 (9%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T+NVPC +R 
Sbjct: 26  SKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVTKNVPCYKRC 85

Query: 85  ASVEEEYEGAGGEILVDNEDND-GWLATHGKP--KAKCDEDEDDNLPSMEAVEISKNNNV 141
             +E   E    E +++ +D D GW+ T+         +  ++  L S +++++   + +
Sbjct: 86  KQMEYSDE---LEAIIEEDDGDGGWVDTYHNTGITGITEAVKEITLESKDSIKLQDCSVL 142

Query: 142 RAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLV------AHEPDDDNI 195
                     EEEE +  DM EY E   +   ETD ATL +  +V      A    +D I
Sbjct: 143 CDEEE-----EEEEGEAADMEEYEESGLL---ETDEATLDTRRIVEACKAKADAGGEDAI 194

Query: 196 LRTRTYDISITYDKYYQTPRVWLTGYDE 223
           L+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct: 195 LQTRTYDLYITYDKYYQTPRLWLFGYDE 222

E2-like enzyme involved in autophagy and mitochondrial homeostasis. Catalyzes the conjugation of ATG8-like proteins (GABARAP, GABARAPL1, GABARAPL2 or MAP1LC3A) to phosphatidylethanolamine (PE). PE-conjugation to ATG8-like proteins is essential for autophagy. Preferred substrate is MAP1LC3A. Also acts as an autocatalytic E2-like enzyme, catalyzing the conjugation of ATG12 to itself, ATG12 conjugation to ATG3 playing a role in mitochondrial homeostasis but not in autophagy. ATG7 (E1-like enzyme) facilitates this reaction by forming an E1-E2 complex with ATG3.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0CM34|ATG3_CRYNJ Autophagy-related protein 3 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ATG3 PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/213 (37%), Positives = 113/213 (53%), Gaps = 16/213 (7%)

Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRA 84
           S FKE G ++  EFV AGD L  K P W WE GE S+ + +LP DKQ+L+TRNVPCLRRA
Sbjct: 26  SKFKEHGRITPEEFVAAGDFLTFKFPVWQWEKGESSRARDFLPPDKQYLVTRNVPCLRRA 85

Query: 85  ASVEEEYEGAGGEILVDNED--------NDGWLATH---GKPKAKCDEDEDDNLPSMEAV 133
            +V+        E L+   D        +D W+ATH     P    D DE  ++P  ++ 
Sbjct: 86  TAVDYTNADEDAEKLLSFLDDAEEAPGPDDDWVATHINRSPPHRPTDMDEIPDIP--DSP 143

Query: 134 EISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDD- 192
             +    +  ++   GG+ EE+E        +  +  +E+  D A +   +    E +  
Sbjct: 144 TTAPTREMAGLNVSSGGKLEEDEIPDIDDIPDMDEEGLEDLEDDAAVRIVHPSEAEVNST 203

Query: 193 --DNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              N+L+ RTYD  I+YDK+YQTPR WL GYDE
Sbjct: 204 AGKNLLQVRTYDCIISYDKHYQTPRFWLFGYDE 236

Putative E2-like conjugating enzyme involved in autophagy and for the cytoplasm to vacuole transport (Cvt).

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
297797109	313	autophagy 3 [Arabidopsis lyrata subsp. l	0.920	0.706	0.770	2e-97
18424474	313	autophagy-related protein 3 [Arabidopsis	0.920	0.706	0.762	8e-96
9758466	334	autophagocytosis protein AUT1-like [Arab	0.920	0.661	0.762	2e-95
110740691	313	autophagocytosis protein - like [Arabido	0.920	0.706	0.757	3e-95
21595613	313	autophagocytosis protein-like [Arabidops	0.920	0.706	0.757	3e-95
224071495	315	predicted protein [Populus trichocarpa]	0.920	0.701	0.764	2e-93
224138464	315	predicted protein [Populus trichocarpa]	0.925	0.704	0.785	5e-91
255539835	314	conserved hypothetical protein [Ricinus	0.925	0.707	0.766	4e-90
38260612	312	autophagocytosis protein [Sisymbrium iri	0.904	0.695	0.731	5e-90
225453454	314	PREDICTED: autophagy-related protein 3 [	0.908	0.694	0.766	4e-88

>gi|297797109|ref|XP_002866439.1| autophagy 3 [Arabidopsis lyrata subsp. lyrata] gi|297312274|gb|EFH42698.1| autophagy 3 [Arabidopsis lyrata subsp. lyrata]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 175/227 (77%), Positives = 200/227 (88%), Gaps = 6/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+PS
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K +
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKGN 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           EDE  NLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 121 EDE--NLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRML 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424474|ref|NP_568934.1| autophagy-related protein 3 [Arabidopsis thaliana] gi|147742948|sp|Q0WWQ1.2|ATG3_ARATH RecName: Full=Autophagy-related protein 3; AltName: Full=Autophagy-related E2-like conjugation enzyme ATG3; Short=AtAPG3; Short=Protein autophagy 3 gi|19912141|dbj|BAB88382.1| autophagy 3 [Arabidopsis thaliana] gi|89000923|gb|ABD59051.1| At5g61500 [Arabidopsis thaliana] gi|332010093|gb|AED97476.1| autophagy-related protein 3 [Arabidopsis thaliana]

 Score =  355 bits (911), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 173/227 (76%), Positives = 198/227 (87%), Gaps = 6/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRML 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758466|dbj|BAB08995.1| autophagocytosis protein AUT1-like [Arabidopsis thaliana]

 Score =  353 bits (907), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/227 (76%), Positives = 198/227 (87%), Gaps = 6/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRML 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110740691|dbj|BAE98447.1| autophagocytosis protein - like [Arabidopsis thaliana]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/227 (75%), Positives = 198/227 (87%), Gaps = 6/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYLVAHEPDDDNILRTRTYD+SITYD+YYQTPRVWLTGYDE   L
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDEYYQTPRVWLTGYDESRML 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21595613|gb|AAM66117.1| autophagocytosis protein-like [Arabidopsis thaliana]

 Score =  353 bits (906), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 172/227 (75%), Positives = 197/227 (86%), Gaps = 6/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVS FVLAGDNLVSKCPTWSWESG+ S
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSXFVLAGDNLVSKCPTWSWESGDAS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG- 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
             E+DNLPSM+A++I++ N +++I TYFGG  EE++DIPDM E++E D+++EN  DPATL
Sbjct: 120 -KEEDNLPSMDALDINEKNTIQSIPTYFGG--EEDDDIPDMEEFDEADNVVEN--DPATL 174

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRML 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071495|ref|XP_002303487.1| predicted protein [Populus trichocarpa] gi|222840919|gb|EEE78466.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/229 (76%), Positives = 198/229 (86%), Gaps = 8/229 (3%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLVSKCPTWSWESGEPS
Sbjct: 1   MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLPA+KQFLITRNVPCLRRAASVEE+YE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKPYLPAEKQFLITRNVPCLRRAASVEEDYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEIS-KNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPAT 179
            DED+N+PSMEA++IS K   ++   +YFGG   EEEDIPDMA++ +PD++I  E+DPAT
Sbjct: 120 GDEDENVPSMEALDISVKRIPIQTNPSYFGG---EEEDIPDMADFEDPDNLI--ESDPAT 174

Query: 180 LPSTYLVAHEP-DDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
           L +TYLVAHEP DDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 175 LQTTYLVAHEPDDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRML 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138464|ref|XP_002326609.1| predicted protein [Populus trichocarpa] gi|222833931|gb|EEE72408.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/228 (78%), Positives = 201/228 (88%), Gaps = 6/228 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLVSKCPTWSWESGEPS
Sbjct: 1   MVLSQKIHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVSKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRKSYLPA+KQFLITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKSYLPAEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEIS-KNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPAT 179
            DED+N+PSMEA+EIS K + ++   +YFGG  EEEEDIPDMA++ +PD++I  E+DPAT
Sbjct: 120 GDEDENVPSMEALEISAKKSLIQTNHSYFGG--EEEEDIPDMADFEDPDNLI--ESDPAT 175

Query: 180 LPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
           L +TYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 176 LQTTYLVAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRML 223

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539835|ref|XP_002510982.1| conserved hypothetical protein [Ricinus communis] gi|223550097|gb|EEF51584.1| conserved hypothetical protein [Ricinus communis]

 Score =  336 bits (862), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 174/227 (76%), Positives = 198/227 (87%), Gaps = 5/227 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSVSEF+LAGDNLV+KCPTWSWESGEPS
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTVSAFKEKGVLSVSEFILAGDNLVAKCPTWSWESGEPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KR SYLP +KQFLITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK    
Sbjct: 61  KRMSYLPPEKQFLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPKESTG 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
            DED+N+PS+EA+EISK + + +I +YFGG  +EEEDIPDM +Y +P+++I  E+DPATL
Sbjct: 121 -DEDENVPSLEALEISKKSPIHSIPSYFGG--KEEEDIPDMDDYEDPNNLI--ESDPATL 175

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            STYL+AHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 176 QSTYLIAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRML 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38260612|gb|AAR15430.1| autophagocytosis protein [Sisymbrium irio]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 166/227 (73%), Positives = 190/227 (83%), Gaps = 10/227 (4%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +G FKG VE++T  RTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+PS
Sbjct: 1   MVLSQKIHGAFKGAVERMTGPRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDPS 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHG+PK + +
Sbjct: 61  KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGRPKDRGN 120

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
           EDE  NLPSM+A+EI++ + ++    Y GG  EEE+DIPDMAE++E D+      DPATL
Sbjct: 121 EDE--NLPSMDALEINERDTIQPKPKYAGG--EEEDDIPDMAEFDEIDN------DPATL 170

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYL 227
            S  LVAH+ DDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE   L
Sbjct: 171 QSNLLVAHQQDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDESRML 217

Source: Sisymbrium irio

Species: Sisymbrium irio

Genus: Sisymbrium

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453454|ref|XP_002276342.1| PREDICTED: autophagy-related protein 3 [Vitis vinifera] gi|297734579|emb|CBI16630.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (845), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 193/223 (86%), Gaps = 5/223 (2%)

Query: 1   MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
           M L QK +  FKGTVE+IT  RTVSAFKEKGVLSV+EFV+AGDNLVSKCPTWSWESGEP 
Sbjct: 1   MVLSQKLHEAFKGTVERITGPRTVSAFKEKGVLSVTEFVIAGDNLVSKCPTWSWESGEPG 60

Query: 61  KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
           KRKSYLP +KQ+LITRNVPCLRRAASVEEEYE AGGE+L+DNEDNDGWLATHGKPK +  
Sbjct: 61  KRKSYLPPEKQYLITRNVPCLRRAASVEEEYEAAGGEVLLDNEDNDGWLATHGKPK-ETK 119

Query: 121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATL 180
            D ++NLPSME ++ISK+  +++I TYFGG  EEEEDIPDMA+Y E D+++  E D ATL
Sbjct: 120 GDAEENLPSMETLDISKDKTIKSIPTYFGG--EEEEDIPDMADYEETDNVV--EADAATL 175

Query: 181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              YLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE
Sbjct: 176 QMPYLVAHEPDDDNILRTRTYDVSITYDKYYQTPRVWLTGYDE 218

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2151566	313	ATG3 "AT5G61500" [Arabidopsis	0.904	0.693	0.762	4e-90
ZFIN|ZDB-GENE-030131-8576	317	apg3l "APG3 autophagy 3-like"	0.862	0.652	0.415	1.5e-35
UNIPROTKB|E1C502	313	ATG3 "Autophagy-related protei	0.820	0.629	0.425	4e-35
MGI|MGI:1915091	314	Atg3 "autophagy related 3" [Mu	0.829	0.633	0.409	3.6e-34
UNIPROTKB|Q6GQE7	313	atg3 "Ubiquitin-like-conjugati	0.866	0.664	0.389	7.4e-34
FB|FBgn0036813	330	Aut1 "Aut1" [Drosophila melano	0.895	0.651	0.395	9.5e-34
UNIPROTKB|Q0VCL3	314	ATG3 "Ubiquitin-like-conjugati	0.820	0.627	0.414	1.2e-33
UNIPROTKB|F1SLS7	314	ATG3 "Autophagy-related protei	0.820	0.627	0.414	2e-33
UNIPROTKB|F1PJ26	312	ATG3 "Autophagy-related protei	0.829	0.637	0.404	2.5e-33
UNIPROTKB|Q5I0S6	312	atg3 "Ubiquitin-like-conjugati	0.820	0.631	0.4	2.5e-33

TAIR|locus:2151566 ATG3 "AT5G61500" [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 170/223 (76%), Positives = 193/223 (86%)

Query:     1 MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             M L QK +  FKGTVE+IT  RT+SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ S
Sbjct:     1 MVLSQKLHEAFKGTVERITGPRTISAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDAS 60

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCD 120
             KRK YLP+DKQFLITRNVPCLRRAASV E+YE AGGE+LVD+EDNDGWLATHGKPK K  
Sbjct:    61 KRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDK-- 118

Query:   121 EDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATL 180
               E+DNLPSM+A++I++ N +++I TYFGG      DIPDM E++E D+++EN  DPATL
Sbjct:   119 GKEEDNLPSMDALDINEKNTIQSIPTYFGGEEDD--DIPDMEEFDEADNVVEN--DPATL 174

Query:   181 PSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              STYLVAHEPDDDNILRTRTYD+SITYDKYYQTPRVWLTGYDE
Sbjct:   175 QSTYLVAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDE 217

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0006914 "autophagy" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

ZFIN|ZDB-GENE-030131-8576 apg3l "APG3 autophagy 3-like" [Danio rerio (taxid:7955)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 93/224 (41%), Positives = 121/224 (54%)

Query:     9 GIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPA 68
             G   G  E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE +K K YLP 
Sbjct:    10 GTALGVAEFLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWKWASGEEAKVKPYLPN 69

Query:    69 DKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDD 125
             DKQFL+TRNVPC +R   +E   E    E +++ +D DG W+ T H        E   + 
Sbjct:    70 DKQFLLTRNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTFHNSGVTGVTEAVREI 126

Query:   126 NLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYL 185
             +L + +   ++ N    A             +  DM EY E   +   ETD ATL ++ +
Sbjct:   127 SLDNKD--NMNMNVKTGACGNSGDDDDDEEGEAADMEEYEESGLL---ETDDATLDTSKM 181

Query:   186 V------AHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
                    A    +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   182 ADLSKTKAEAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 225

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

UNIPROTKB|E1C502 ATG3 "Autophagy-related protein 3" [Gallus gallus (taxid:9031)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 92/216 (42%), Positives = 122/216 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W SGE  K K+YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWASGEELKVKAYLPTDKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H        E  ++  L S + 
Sbjct:    77 KNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHNAGIVGATEAVKEITLDSKDN 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPD- 191
             ++I +    R+ S           +  DM EY E   +   ETD ATL +  +V  +   
Sbjct:   134 IKIPE----RSASCE-DDDDEDEGEAADMEEYEESGLL---ETDDATLDTRQIVEVKAKV 185

Query:   192 ----DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
                 +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   186 DVGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 221

GO:0015031 "protein transport" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

MGI|MGI:1915091 Atg3 "autophagy related 3" [Mus musculus (taxid:10090)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 88/215 (40%), Positives = 120/215 (55%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTDKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T+         +    + ++E+ +
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGITGITEAVKEI-TLESKD 132

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV------AH 188
               K  +  A+            +  DM EY E   +   ETD ATL +  +V      A 
Sbjct:   133 SIKLQDCSALCDE--EDEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKAD 187

Query:   189 EPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   188 AGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 222

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0006464 "cellular protein modification process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IMP

GO:0019777 "Atg12 ligase activity" evidence=IDA

GO:0019787 "small conjugating protein ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IMP

UNIPROTKB|Q6GQE7 atg3 "Ubiquitin-like-conjugating enzyme ATG3" [Xenopus laevis (taxid:8355)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 90/231 (38%), Positives = 128/231 (55%)

Query:     5 QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             Q  +   KG   ++  + T     S FKE GV++  EF+ AGD+LV  CPTW W +GE S
Sbjct:     2 QNVFNTVKGKALEVAEYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEES 61

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAK 118
             K K YLP DKQFL+T+NVPC +R   +E   E    E +++ +D DG W+ T H    + 
Sbjct:    62 KIKPYLPNDKQFLMTKNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHHTGLSG 118

Query:   119 CDEDEDDNLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPA 178
               E   +   ++E  +  K  +  A+            +  DM +Y E   ++EN  D A
Sbjct:   119 VTEAVKEI--TLETQDCGKTTDNIAVCD---DDDDDEGEAADMEDYEE-SGLLEN--DDA 170

Query:   179 TLPSTYLV-AHEPD-----DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
             T+ ++ +  A +P      +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   171 TVDTSKIKEACKPKADLGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 221

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

FB|FBgn0036813 Aut1 "Aut1" [Drosophila melanogaster (taxid:7227)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 95/240 (39%), Positives = 119/240 (49%)

Query:     5 QKFYGIFKGTVEKITSHRTV----SAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPS 60
             Q      KGT   +  + T     S F+E GVL+  EFV AGD+LV  CPTW W +G+ +
Sbjct:     2 QSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHCPTWQWAAGDET 61

Query:    61 KRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKC 119
             K K YLP DKQFLITRNVPC RR   +E  Y   G E LV+ E  DG W+ TH       
Sbjct:    62 KTKPYLPKDKQFLITRNVPCYRRCKQME--Y--VGEETLVEEESGDGGWVETHQLNDDGT 117

Query:   120 DEDEDD--NLPSMEAVEISKNNNVRAISTYFGGXXXXXXDIP--DMAEYNEP------DS 169
              + ED    L   E  E     +    +   GG      D    DM ++ E       D 
Sbjct:   118 TQLEDKICELTMEETKEEMHTPDSDKSAPGAGGQAEDEDDDEAIDMDDFEESGMLELVDP 177

Query:   170 IIENET---DPATLPSTYLVAH---EPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              +   T   +P    S    A    E   D++L TRTYD+ I+YDKYYQTPR+W+ GYDE
Sbjct:   178 AVATTTRKPEPEAKASPVAAASGDAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDE 237

GO:0006914 "autophagy" evidence=IMP

UNIPROTKB|Q0VCL3 ATG3 "Ubiquitin-like-conjugating enzyme ATG3" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 90/217 (41%), Positives = 124/217 (57%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP+ KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPSGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H    A   E  ++  L S ++
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDS 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---E 189
             +++    +  A+            +  DM EY E   +   ETD ATL +  +V     +
Sbjct:   134 IKLQ---DCSALCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAK 185

Query:   190 PD---DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              D   +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   186 TDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 222

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0019899 "enzyme binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1SLS7 ATG3 "Autophagy-related protein 3" [Sus scrofa (taxid:9823)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 90/217 (41%), Positives = 122/217 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLAT-HGKPKAKCDED-EDDNLPSMEA 132
             +NVPC +R   +E   E    E +++ +D DG W+ T H    A   E  ++  L S + 
Sbjct:    77 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNTGIAGITEAVKEITLESKDG 133

Query:   133 VEISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---E 189
             +++    +  A+            +  DM EY E   +   ETD ATL +  +V     +
Sbjct:   134 IKLQ---DCSALCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAK 185

Query:   190 PD---DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
              D   +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   186 TDAGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 222

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0019777 "Atg12 ligase activity" evidence=IEA

GO:0019776 "Atg8 ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000153 "cytoplasmic ubiquitin ligase complex" evidence=IEA

GO:0000045 "autophagic vacuole assembly" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|F1PJ26 ATG3 "Autophagy-related protein 3" [Canis lupus familiaris (taxid:9615)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 87/215 (40%), Positives = 120/215 (55%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EFV AGD+LV  CPTW W +GE  K K+YLP  KQFL+T
Sbjct:    15 EYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWQWATGEELKVKAYLPTGKQFLVT 74

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T+         +    + ++E+ +
Sbjct:    75 KNVPCYKRCKQMEYSDEL---EAIIEEDDGDGGWVDTYHNAGVTGITEAVKEI-TLESKD 130

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAH---EPD 191
               K  +  A+            +  DM EY E   +   ETD ATL +  +V     + D
Sbjct:   131 SIKLQDCSAVCEE--EEEEDEGEAADMEEYEESGLL---ETDEATLDTRKIVEACKAKTD 185

Query:   192 ---DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   186 AGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 220

GO:0005737 "cytoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

UNIPROTKB|Q5I0S6 atg3 "Ubiquitin-like-conjugating enzyme ATG3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 86/215 (40%), Positives = 121/215 (56%)

Query:    16 EKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLIT 75
             E +T     S FKE GV++  EF+ AGD+LV  CPTW W +GE SK K YLP DKQFL+T
Sbjct:    17 EYLTPVLKESKFKETGVITPEEFLAAGDHLVHHCPTWQWSAGEESKIKPYLPNDKQFLMT 76

Query:    76 RNVPCLRRAASVEEEYEGAGGEILVDNEDNDG-WLATHGKPKAKCDEDEDDNLPSMEAVE 134
             +NVPC +R   +E   E    E +++ +D DG W+ T         E   +   ++E  +
Sbjct:    77 KNVPCYKRCKQMEYSDEQ---EAIIEEDDGDGGWVDTFHHSLTGVTEAVKEI--TLETQD 131

Query:   135 ISKNNNVRAISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLV-AHEPD-- 191
               K  +  A+            +  DM +Y E   +++N  D AT+ ++ +  A +P   
Sbjct:   132 CGKTTSNIAVDD---DDDDDEGEAADMEDYEE-SGLLDN--DDATVDTSKIKEACKPKAD 185

Query:   192 ---DDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
                +D IL+TRTYD+ ITYDKYYQTPR+WL GYDE
Sbjct:   186 LGGEDAILQTRTYDLYITYDKYYQTPRLWLFGYDE 220

GO:0000045 "autophagic vacuole assembly" evidence=ISS

GO:0019776 "Atg8 ligase activity" evidence=ISS

GO:0019777 "Atg12 ligase activity" evidence=ISS

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WWQ1	ATG3_ARATH	No assigned EC number	0.7621	0.9208	0.7060	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__2125__AT5G61500.1	annotation not avaliable (313 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_800258.1	annotation not avaliable (697 aa)				•	•	•	•		0.942
	fgenesh1_pm.C_scaffold_1003508	annotation not avaliable (96 aa)					•		•		0.566
	fgenesh1_pm.C_scaffold_3001200	annotation not avaliable (94 aa)					•		•		0.549

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam03986	146	pfam03986, Autophagy_N, Autophagocytosis associate	3e-48
pfam03987	62	pfam03987, Autophagy_act_C, Autophagocytosis assoc	2e-06

>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3), N-terminal domain

 Score =  155 bits (394), Expect = 3e-48
 Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 10/155 (6%)

Query: 6   KFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSY 65
             +       E +T     S F+E GV++  EFV AGD LV K PTWSW +G+PSK + Y
Sbjct: 1   SLHSALSSVREYLTPVLKTSKFRETGVITPEEFVAAGDYLVHKFPTWSWAAGDPSKIRPY 60

Query: 66  LPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKP-KAKCDEDED 124
           LP DKQFL+TRNVPC RRA  +E        EI+ D +++DGW+ THG   K K D  ++
Sbjct: 61  LPPDKQFLVTRNVPCYRRAKQMEYGDGAE--EIVEDEDEDDGWVTTHGNRDKQKDDIADE 118

Query: 125 DNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIP 159
           +++P +   +    ++  A       +E++++DIP
Sbjct: 119 EDIPEIGDDDDDVVDSSDA-------DEDDDDDIP 146

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme. It catalyzes the conjugation of Atg8 and phosphatidylethanolamine. Length = 146

>gnl|CDD|202841 pfam03987, Autophagy_act_C, Autophagocytosis associated protein, active-site domain

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 14/20 (70%), Positives = 16/20 (80%)

Query: 204 SITYDKYYQTPRVWLTGYDE 223
            ITYDK YQ PR++L GYDE
Sbjct: 1   YITYDKSYQVPRLYLRGYDE 20

Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex. Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG2981	295	consensus Protein involved in autophagocytosis dur	100.0
PF03986	145	Autophagy_N: Autophagocytosis associated protein (	100.0
PF03987	62	Autophagy_act_C: Autophagocytosis associated prote	98.7

>KOG2981 consensus Protein involved in autophagocytosis during starvation [General function prediction only]

Probab=100.00  E-value=7.6e-84  Score=574.14  Aligned_cols=209  Identities=44%  Similarity=0.718  Sum_probs=166.5

Q ss_pred             ChhHHHHHHHHhhhhhhhccCCCCCccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCcc
Q 026327            1 MELQQKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPC   80 (240)
Q Consensus         1 ~~~~~~l~s~~~~~~eyltPv~~~S~F~etG~LTPeEFV~AGD~LV~kfPTW~W~~gd~~k~k~yLP~dKQfLvTRnVPC   80 (240)
                      +|+-++|+|+|++||||||||+|+|+|++||||||||||+||||||||||||||++|+++|+|+|||+||||||||||||
T Consensus         1 q~~~n~l~sa~l~~~E~lTpv~k~S~F~etGvitpeEFV~AGD~Lvh~cPTW~W~~gd~~k~r~fLPkdKQfLItRnVpC   80 (295)
T KOG2981|consen    1 QNLANTLKSAALNWREYLTPVLKESKFKETGVITPEEFVAAGDHLVHHCPTWSWAEGDESKIRPFLPKDKQFLITRNVPC   80 (295)
T ss_pred             CcHHHHHHHHHHhHHHhcccccchhhhhhcCccCHHHHHhccchhhhcCCccccccCCcccccccCCCCceEEEeccChH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhhhhccCCcccccCCCCCceeecCCCCCCCCCCCccCCCCCchhhhhccccCcccccCCCCCCCCCcCCccC
Q 026327           81 LRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPD  160 (240)
Q Consensus        81 ~~R~~~~~~e~~~~~e~~~~~~~~ddGWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~di~D  160 (240)
                      +|||+||  +|..+.+.+++ +++++|||+||+....         .+.|...+........+.+ +  ..+++++|++|
T Consensus        81 ~kR~~q~--~~~ee~e~iv~-~Edg~gwvdT~~~ed~---------le~~~~e~ih~~~t~~~~~-e--~~~edddE~~d  145 (295)
T KOG2981|consen   81 YKRCKQM--EYVEELEVIVD-EEDGGGWVDTHNEEDT---------LEYIGKETIHSQDTPAAAP-E--SSDEDDDELID  145 (295)
T ss_pred             HHHHhhh--hcccccceEEe-ccCCCccccccchhhc---------ccccchhhcccCCCCcCCc-c--ccccccccccc
Confidence            9999999  67777666665 4455999999963221         1111111111101111111 2  36678899999


Q ss_pred             ccccCCCCCCccCCCCCCCCCCcccccCCCCCCCccceeeeEEEEEeeCCCCCceeEEeeecCCCCCcc
Q 026327          161 MAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDL  229 (240)
Q Consensus       161 m~~~~~~~~~~~~edD~~~~~~~~~~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRmwL~GYde~g~~~~  229 (240)
                      |++++++|++    +|+++++... .....++.+|+++||||||||||||||||||||+||||+|+|+.
T Consensus       146 ~~e~~e~d~~----edp~~~~s~~-~~~~~dd~gil~tRtYDL~I~YdkyYqtPRl~l~Gyde~r~pLt  209 (295)
T KOG2981|consen  146 MEELEESDEE----EDPATFVSKA-VAGLADDSGILQTRTYDLYITYDKYYQTPRLWLVGYDENRQPLT  209 (295)
T ss_pred             cccccccccc----cCHHHHhhhh-ccccccccccceeeEEEEEEEeeccccCceEEEEEecCCCCcCC
Confidence            9999988863    4576665422 22333456799999999999999999999999999999998764

>PF03986 Autophagy_N: Autophagocytosis associated protein (Atg3), N-terminal domain ; InterPro: IPR007134 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=100.00  E-value=6.3e-60  Score=393.81  Aligned_cols=108  Identities=52%  Similarity=0.924  Sum_probs=43.9

Q ss_pred             HHHHHhhhhhhhccCCCCCccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCcchhhhhh
Q 026327            7 FYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAAS   86 (240)
Q Consensus         7 l~s~~~~~~eyltPv~~~S~F~etG~LTPeEFV~AGD~LV~kfPTW~W~~gd~~k~k~yLP~dKQfLvTRnVPC~~R~~~   86 (240)
                      |+|+|++||||||||+|+|+|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||++||++
T Consensus         2 l~s~~~~~~e~ltPv~~~S~F~etG~iTPeEFV~AGD~LV~k~PTW~W~~g~~~k~k~yLP~dKQfLvtRnVPC~~R~~~   81 (145)
T PF03986_consen    2 LRSTFSSVREYLTPVLHESKFKETGVITPEEFVAAGDYLVHKFPTWQWSAGDPSKRKDYLPKDKQFLVTRNVPCYRRAKD   81 (145)
T ss_dssp             --------------------HHHHS---HHHHHHHHHHHHHH-TT-EE---TTB---TTS-TT-S-EEEEEEEE-S-TTT
T ss_pred             hHHHHHHHHHHhcCCCCcccccccceeCHHHHHHhhhHHHhhCCcceeccCCccccCCCCCCCCeEEEecCcccHHhhhh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhccCCcccccCCCCCceeecCCCCC
Q 026327           87 VEEEYEGAGGEILVDNEDNDGWLATHGKPK  116 (240)
Q Consensus        87 ~~~e~~~~~e~~~~~~~~ddGWv~t~~~~~  116 (240)
                      +  ++....+.+++++++++|||.||+...
T Consensus        82 ~--~~~~~~e~~~~~~~~ddgWv~t~~~~~  109 (145)
T PF03986_consen   82 M--EYSEEDEEIVEDDDDDDGWVDTHHNQT  109 (145)
T ss_dssp             ------------------------------
T ss_pred             c--cccccccceeccCCCCCCeEccCCccc
Confidence            9  455666677777778999999998543

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the lysosome/vacuole. Atg3 is a ubiquitin like modifier that is topologically similar to the canonical E2 enzyme []. It catalyses the conjugation of Atg8 and phosphatidylethanolamine []. This domain is the N-terminal of Atg3 while the C-terminal is represented by IPR007135 from INTERPRO.; PDB: 3T7G_C 2DYT_A.

>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes

Probab=98.70  E-value=1.1e-08  Score=73.73  Aligned_cols=31  Identities=32%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             EEEeeCCCCCceeEEeeecCCCCCcchhhHH
Q 026327          204 SITYDKYYQTPRVWLTGYDEVSYLDLHLSWW  234 (240)
Q Consensus       204 ~ITYDkyYqTPRmwL~GYde~g~~~~~~~~~  234 (240)
                      +|+||++||||+|||.||+++|+++..-..|
T Consensus         1 ~I~Ys~~YqvP~L~f~~~~~~g~~l~~~~~~   31 (62)
T PF03987_consen    1 HITYSPSYQVPVLYFRGYDEDGSPLSLEEVY   31 (62)
T ss_dssp             EEEEETTTTEEEEEEEEEETT--B--HHHHH
T ss_pred             CEEecCccCCCEEEEEEECCCCCCCCHHHHH
Confidence            7999999999999999999999776554444

Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3vx8_B	292	Crystal Structure Of Arabidopsis Thaliana Atg7ntd-A		1e-87
2dyt_A	312	The Crystal Structure Of Saccharomyces Cerevisiae A		6e-11
4gsl_C	312	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		4e-10

>pdb|3VX8|B Chain B, Crystal Structure Of Arabidopsis Thaliana Atg7ntd-Atg3 Complex Length = 292

Iteration: 1
 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/198 (78%), Positives = 175/198 (88%), Gaps = 6/198 (3%)
Query: 26  AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAA 85
           AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG+ SKRK YLP+DKQFLITRNVPCLRRAA
Sbjct: 5   AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAA 64
Query: 86  SVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAIS 145
           SV E+YE AGGE+LVD+EDNDGWLATHGKPK K    E+DNLPSM+A++I++ N +++I 
Sbjct: 65  SVAEDYEAAGGEVLVDDEDNDGWLATHGKPKDKG--KEEDNLPSMDALDINEKNTIQSIP 122
Query: 146 TYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISI 205
           TYFGG      DIPDM E++E D+++EN  DPATL STYLVAHEPDDDNILRTRTYD+SI
Sbjct: 123 TYFGG--EEDDDIPDMEEFDEADNVVEN--DPATLQSTYLVAHEPDDDNILRTRTYDLSI 178
Query: 206 TYDKYYQTPRVWLTGYDE 223
           TYDKYYQTPRVWLTGYDE
Sbjct: 179 TYDKYYQTPRVWLTGYDE 196

>pdb|2DYT|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg3 Length = 312

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 91/200 (45%), Gaps = 31/200 (15%)
Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW--ESGEPSKRKSYLPADKQFLITRNVPCLR 82
           S F   G ++  EFV AGD L    PTW W  ES + S R  +LP +KQFLI R VPC +
Sbjct: 22  STFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYR-DFLPKNKQFLIIRKVPCDK 80
Query: 83  RAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
           RA   E+  E  G ++++     DG              DEDD L  +     S+  +V+
Sbjct: 81  RA---EQCVEVEGPDVIMKGFAEDG--------------DEDDVLEYIG----SETEHVQ 119
Query: 143 AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYD 202
             ST  GG      D     + +E    +E + +     +    A      ++ + R YD
Sbjct: 120 --STPAGGTKDSSID-----DIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 203 ISITYDKYYQTPRVWLTGYD 222
           + I Y   Y+ P++++ G++
Sbjct: 173 LYIAYSTSYRVPKMYIVGFN 192

>pdb|4GSL|C Chain C, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 312

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 31/200 (15%)
Query: 25  SAFKEKGVLSVSEFVLAGDNLVSKCPTWSW--ESGEPSKRKSYLPADKQFLITRNVPCLR 82
           S F   G ++  EFV AGD L    PTW W  ES + S R  +LP +KQFLI R VP  +
Sbjct: 22  STFLTTGQITPEEFVQAGDYLAHMFPTWKWNEESSDISYR-DFLPKNKQFLIIRKVPADK 80
Query: 83  RAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVR 142
           RA   E+  E  G ++++     DG              DEDD L  +     S+  +V+
Sbjct: 81  RA---EQAVEVEGPDVIMKGFAEDG--------------DEDDVLEYIG----SETEHVQ 119
Query: 143 AISTYFGGXXXXXXDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYD 202
             ST  GG      D     + +E    +E + +     +    A      ++ + R YD
Sbjct: 120 --STPAGGTKDSSID-----DIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERYYD 172
Query: 203 ISITYDKYYQTPRVWLTGYD 222
           + I Y   Y+ P++++ G++
Sbjct: 173 LYIAYSTSYRVPKMYIVGFN 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	4e-52

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae} Length = 312

 Score =  170 bits (431), Expect = 4e-52
 Identities = 45/218 (20%), Positives = 78/218 (35%), Gaps = 29/218 (13%)

Query: 7   FYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSW-ESGEPSKRKSY 65
                    E +T     S F   G ++  EFV AGD L    PTW W E       + +
Sbjct: 4   IRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDF 63

Query: 66  LPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDNDGWLATHGKPKAKCDEDEDD 125
           LP +KQFLI R VPC +RA    E             + ++  +  +   + +  +    
Sbjct: 64  LPKNKQFLIIRKVPCDKRAEQCVEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPA 123

Query: 126 NLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL 185
                 +++                E +EE++  D  E+N                    
Sbjct: 124 GGTKDSSIDDIDELIQ-------DMEIKEEDENDDTEEFNA------------------- 157

Query: 186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDE 223
                   ++ + R YD+ I Y   Y+ P++++ G++ 
Sbjct: 158 --KGGLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNS 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3vx8_B	292	Autophagy-related protein 3; E1-E2 complex, ligase	100.0
2dyt_A	312	Autophagy-related protein 3; E2 fold, ligase; 2.50	100.0
4ebr_A	169	Ubiquitin-like-conjugating enzyme ATG10; autophagy	98.63
3vx7_B	152	E2; ubiquitin conjugation; 3.20A {Kluyveromyces ma	96.26
2lpu_A	152	Kmatg10; autophagy, E2-like, proteolysis, protein	94.21

>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}

Probab=100.00  E-value=1.1e-74  Score=525.33  Aligned_cols=202  Identities=76%  Similarity=1.235  Sum_probs=94.6

Q ss_pred             ccccccccCHHHHHHhcccccccCCceecCCCCCCCCCCCCCCCCeeEEecCCcchhhhhhhhhhhhccCCcccccCCCC
Q 026327           26 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGEPSKRKSYLPADKQFLITRNVPCLRRAASVEEEYEGAGGEILVDNEDN  105 (240)
Q Consensus        26 ~F~etG~LTPeEFV~AGD~LV~kfPTW~W~~gd~~k~k~yLP~dKQfLvTRnVPC~~R~~~~~~e~~~~~e~~~~~~~~d  105 (240)
                      +|++||+|||||||+||||||||||||||++|+++|+|+|||+||||||||||||+|||++|+++|..+.++++++++++
T Consensus         5 ~F~etG~lTPEEFV~AGD~LV~kfPTW~W~~g~~~k~~~yLP~dKQfLvTRnVPC~~R~~~~~~~~~~~~e~~~~~~d~d   84 (292)
T 3vx8_B            5 AFKEKGVLSVSEFVLAGDNLVSKCPTWSWESGDASKRKPYLPSDKQFLITRNVPCLRRAASVAEDYEAAGGEVLVDDEDN   84 (292)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHCTTCEEECCCGGGCCTTSCTTCSEEEEEEEEECSCTTC-------------------
T ss_pred             ceeeCceeCHHHHHhhhhhhhhcCCCccCCCCCccccccCCCCCCeEEEECCcccHHHhhhhhccccccchhhccccCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999777877777777767778


Q ss_pred             CceeecCCCCCCCCCCCccCCCCCchhhhhccccCcccccCCCCCCCCCcCCccCccccCCCCCCccCCCCCCCCCCccc
Q 026327          106 DGWLATHGKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEEEEDIPDMAEYNEPDSIIENETDPATLPSTYL  185 (240)
Q Consensus       106 dGWv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~di~Dm~~~~~~~~~~~~edD~~~~~~~~~  185 (240)
                      +|||.||+.....  ....+.+++|+...........+....  ..++++++|+||++++++++++  ++|++++.+++.
T Consensus        85 dgWv~t~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~d~~ei~Dmdd~~d~~~~~--~dd~a~~~~~~~  158 (292)
T 3vx8_B           85 DGWLATHGKPKDK--GKEEDNLPSMDALDINEKNTIQSIPTY--FGGEEDDDIPDMEEFDEADNVV--ENDPATLQSTYL  158 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceeecCCccccc--ccccccccccccccccccccccccccc--cccccccccCchhhhhcccccc--ccchhhhccccc
Confidence            9999999743221  123446777765532211111111111  2345688999999998877654  567766544333


Q ss_pred             ccCCCCCCCccceeeeEEEEEeeCCCCCceeEEeeecCCCCCcchhhH
Q 026327          186 VAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSW  233 (240)
Q Consensus       186 ~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRmwL~GYde~g~~~~~~~~  233 (240)
                      ....+++++|+++||||||||||+|||||||||+||+++|+|++--..
T Consensus       159 ~~~~~~~~~i~~~RtYd~~ItYs~~YqtPrLyl~gy~~~g~PL~~ee~  206 (292)
T 3vx8_B          159 VAHEPDDDNILRTRTYDLSITYDKYYQTPRVWLTGYDESRMLLQPELV  206 (292)
T ss_dssp             ----------CCCEEEEEEEEEETTTTEEEEEEEEECTTSCBCCGGGG
T ss_pred             cccccCcccccceEEEEEEEEEECCCCCCeEEEEEECCCCCcCCHHHH
Confidence            223334568999999999999999999999999999999987654333

>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.4e-71  Score=505.08  Aligned_cols=193  Identities=24%  Similarity=0.456  Sum_probs=98.2

Q ss_pred             HHHHHHHhhhhhhhccCCCCCccccccccCHHHHHHhcccccccCCceecCCC-CCCCCCCCCCCCCeeEEecCCcchhh
Q 026327            5 QKFYGIFKGTVEKITSHRTVSAFKEKGVLSVSEFVLAGDNLVSKCPTWSWESG-EPSKRKSYLPADKQFLITRNVPCLRR   83 (240)
Q Consensus         5 ~~l~s~~~~~~eyltPv~~~S~F~etG~LTPeEFV~AGD~LV~kfPTW~W~~g-d~~k~k~yLP~dKQfLvTRnVPC~~R   83 (240)
                      +.|+|++++||||||||+|+|+|++||+|||||||+||||||||||||||++| +++|+|+|||+||||||||||||+||
T Consensus         2 n~~~s~~~~~~e~ltpv~~~S~F~etG~lTPeEFV~AGD~Lv~k~PTW~W~~~~~~~k~~~yLP~dKQfLiTRnVPC~~R   81 (312)
T 2dyt_A            2 SMIRSTLSSWREYLTPITHKSTFLTTGQITPEEFVQAGDYLCHMFPTWKWNEESSDISYRDFLPKNKQFLIIRKVPCDKR   81 (312)
T ss_dssp             ---------------------CHHHHSCCCHHHHHHHHHHHHHHCTTCEECCCCTTBCCCTTSCTTCSCEEEEEEEECSC
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccCcccCHHHHHhcchhhhhhCCccccccCCCcccccCCCCCCceEEEecCcccHHH
Confidence            35899999999999999999999999999999999999999999999999855 78999999999999999999999999


Q ss_pred             hhhhhhhhhccCCcccc-------cCCCCCceeecC--CCCCCCCCCCccCCCCCchhhhhccccCcccccCCCCCCCCC
Q 026327           84 AASVEEEYEGAGGEILV-------DNEDNDGWLATH--GKPKAKCDEDEDDNLPSMEAVEISKNNNVRAISTYFGGEEEE  154 (240)
Q Consensus        84 ~~~~~~e~~~~~e~~~~-------~~~~ddGWv~t~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  154 (240)
                      |++|   +....+++++       ++++++|||.||  +...........++|++|+                   +.++
T Consensus        82 ~~~~---~~~~~~~~~~~~~~~~~~~~~~dgWv~t~~~~~~~~~~~~~~~~~i~~~~-------------------~~~d  139 (312)
T 2dyt_A           82 AEQC---VEVEGPDVIMKGFAEDGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDID-------------------ELIQ  139 (312)
T ss_dssp             TTTC------------------------------------------------CHHHH-------------------HHHH
T ss_pred             hhhc---cccchhhhhhccccccccccCCCceeeccccccccCcccccccccccccc-------------------cccc
Confidence            9999   3344444443       335678999998  2110000000001111110                   0011


Q ss_pred             cCCccCccccCCCCCCccCCCCCCCCCCcccccCCCCCCCccceeeeEEEEEeeCCCCCceeEEeeecCCCCCcchhhHH
Q 026327          155 EEDIPDMAEYNEPDSIIENETDPATLPSTYLVAHEPDDDNILRTRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWW  234 (240)
Q Consensus       155 ~~di~Dm~~~~~~~~~~~~edD~~~~~~~~~~~~~~~~~~i~~~RtYDL~ITYDkyYqTPRmwL~GYde~g~~~~~~~~~  234 (240)
                      +++|+|.      ++    ++|++++....     ..+++|.++||||+|||||+|||||||||+||+++|+|+..-..|
T Consensus       140 ~~~~~d~------~~----~~d~~~~~~~~-----~~~~~~~~~rtYd~~ItYs~sYqvPvLyf~gy~~dg~PL~~~e~~  204 (312)
T 2dyt_A          140 DMEIKEE------DE----NDDTEEFNAKG-----GLAKDMAQERYYDLYIAYSTSYRVPKMYIVGFNSNGSPLSPEQMF  204 (312)
T ss_dssp             HHHHC-----------------------------------CCCCEEEEEEEEEETTTTEEEEEEEEEETTCCBCCHHHHH
T ss_pred             ccccccc------cc----cCCHHHhhccc-----cccCCccceEEEEEEEEEecCccCCeEEEEeECCCCCCCCHHHHH
Confidence            1222221      10    22322221111     124578999999999999999999999999999999876544433

>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}

Probab=98.63  E-value=8.5e-09  Score=86.58  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=29.3

Q ss_pred             ceeeeEEEEEeeCCCCCceeEEeeecCCCCCc
Q 026327          197 RTRTYDISITYDKYYQTPRVWLTGYDEVSYLD  228 (240)
Q Consensus       197 ~~RtYDL~ITYDkyYqTPRmwL~GYde~g~~~  228 (240)
                      +.++||++||||++||||+||++||+++|.+.
T Consensus        61 ~~~~id~~I~Ys~sYqVPvL~f~~~~~~~~~~   92 (169)
T 4ebr_A           61 LLNHIELYLTYSKVYNEPLLLLRIWEEKSIDG   92 (169)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEEEEEETT
T ss_pred             cceEEEEEEEEecccCCcEEEEEEEcCCCCcc
Confidence            56899999999999999999999999998643

>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A

Probab=96.26  E-value=0.00099  Score=55.50  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=28.5

Q ss_pred             eeeeEEEEEeeCCCCCceeEEeeecCCCCCcchhhHH
Q 026327          198 TRTYDISITYDKYYQTPRVWLTGYDEVSYLDLHLSWW  234 (240)
Q Consensus       198 ~RtYDL~ITYDkyYqTPRmwL~GYde~g~~~~~~~~~  234 (240)
                      .-+||+.|+||.+||+|.||+..|..+ .+.-.-+||
T Consensus        48 ~~~~e~~I~Ys~~YqvPvL~fR~~~~~-~~~~ie~~~   83 (152)
T 3vx7_B           48 DTLLELHIYYDHVYHVPSIKFRLWSLD-TEEDISSLR   83 (152)
T ss_dssp             TEEEEEEEEECSSSSSEEEEEEEEEEE-ECSSSEEEE
T ss_pred             ceEEEEEEEEeccccCceEEEEeecCC-cccchhhhe
Confidence            478999999999999999999999877 333333443

>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}

Probab=94.21  E-value=0.0033  Score=52.28  Aligned_cols=28  Identities=18%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             eeeEEEEEeeCCCCCceeEEeeecCCCC
Q 026327          199 RTYDISITYDKYYQTPRVWLTGYDEVSY  226 (240)
Q Consensus       199 RtYDL~ITYDkyYqTPRmwL~GYde~g~  226 (240)
                      =++|+.|+|++.||+|.||+.=|+.++.
T Consensus        49 ~~iE~~I~Y~~~YqVP~L~fRlwe~~~~   76 (152)
T 2lpu_A           49 TLLELHIYYDHVYHVPSIKFRLWSLDTE   76 (152)
Confidence            4789999999999999999999988873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00