Citrus Sinensis ID: 026335

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGMEDASGGSEAMAVD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccEEEEEccccccHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccc
Coil and Loop (DISEMBL)
mlakgrkvpgraetvpvnyafgpheddviIKHRlltrttttrgepplkkLQKKFTSFVLEIekdednnnDCEKLAKAFLQELStfeipllkskAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIavqpprsetQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEqkggmedasggseamavd
Flexible Loop (DISEMBL)
mlakgrkvpgraetvpvnyafgpheddviiKHRLltrttttrgepplkklqKKFTSFVLEIekdednnnDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIrkliavqpprsetQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEqkggmedasggseamavd
Low Complexity Region (SEG)
MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHrlltrttttrGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGMEDASGGSEAMAVD
Disordered region (IsUnstruct)
**************VPVNYAFGPHEDDVIIKHRLLTRTTT***********KKFTSFVLEIE*******DCEKLAKAFLQELSTFEIPLLKSKAVIDANL************************************************KLIA**********IITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL**************************************
Disordered Region (DISOPRED)
***********************HEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSF*****************AKAFLQELSTFEIPLLKSKAVI****R*****************************LE*SKIERQHKEECEAIRKL************************************LRKKQFALLLHVVDEL**************************************
Disordered Region (DISEMBL)
**********RAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA********************
Disordered Region (DISPRO)
***KGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAE*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEAIRKLIAVQPPxxxxxxxxxxxxxxxxxxxxxxxxxxxxLELRKKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGGSEAMAVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
A7RX34	205	THO complex subunit 7 hom	N/A	no	0.754	0.882	0.326	1e-15
Q6I9Y2	204	THO complex subunit 7 hom	yes	no	0.775	0.911	0.314	6e-14
Q3SZ60	204	THO complex subunit 7 hom	yes	no	0.775	0.911	0.314	6e-14
Q7SZ78	201	THO complex subunit 7 hom	N/A	no	0.775	0.925	0.308	8e-14
Q7TMY4	204	THO complex subunit 7 hom	yes	no	0.775	0.911	0.314	8e-14
Q6P643	199	THO complex subunit 7 hom	yes	no	0.766	0.924	0.308	2e-13
Q6DGZ3	202	THO complex subunit 7 hom	yes	no	0.779	0.925	0.282	1e-12
Q8IRJ8	288	THO complex protein 7 OS=	yes	no	0.741	0.618	0.277	1e-08
Q552L5	215	THO complex subunit 7 hom	yes	no	0.741	0.827	0.259	8e-08

>sp|A7RX34|THOC7_NEMVE THO complex subunit 7 homolog OS=Nematostella vectensis GN=thoc7 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 6/187 (3%)

Query: 26  DDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTF 85
           DD +I+ RLL        +  +  L K F  +      D+DN+   +KL    L +L+  
Sbjct: 3   DDEVIRKRLLIDGEGVGDDRRITTLMKTFVKWCNST--DDDNDASYQKL----LAQLAQC 56

Query: 86  EIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECE 145
           E  + K++ V   N RE EN+ +  +E+ +    A  +I   K  L+E+K  R++K+E +
Sbjct: 57  EFAMGKTEMVHAMNERETENYEKAYKEVEQSITHAYEEIATCKTNLQEAKRIRRNKQEYD 116

Query: 146 AIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205
           A+ K I   P R ET R I++LEK++ +L     +    LELRKKQF LL++ + ELQ  
Sbjct: 117 ALAKEITKHPERQETTRQISELEKDLNSLTETKESLVSKLELRKKQFYLLINTIHELQRM 176

Query: 206 MEEEQKN 212
           +++E+ +
Sbjct: 177 IDDEKTD 183

Nematostella vectensis (taxid: 45351)

>sp|Q6I9Y2|THOC7_HUMAN THO complex subunit 7 homolog OS=Homo sapiens GN=THOC7 PE=1 SV=3

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 21  FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQ 80
            G   DD +I+ RLL        +  +  L K F  +     ++E  +       +  L 
Sbjct: 1   MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQ-----YQRMLS 55

Query: 81  ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH 140
            LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R++
Sbjct: 56  TLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKN 115

Query: 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200
           ++E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + 
Sbjct: 116 RQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIH 175

Query: 201 ELQNTMEEEQK 211
           ELQ T+E ++K
Sbjct: 176 ELQQTLENDEK 186

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex. The TREX complex is essential for the export of Kaposi's sarcoma-associated herpesvirus (KSHV) intronless mRNAs and infectious virus production. The recruitment of the TREX complex to the intronless viral mRNA occurs via an interaction between KSHV ORF57 protein and ALYREF/THOC4.

Homo sapiens (taxid: 9606)

>sp|Q3SZ60|THOC7_BOVIN THO complex subunit 7 homolog OS=Bos taurus GN=THOC7 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 5/191 (2%)

Query: 21  FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQ 80
            G   DD +I+ RLL        +  +  L K F  +     ++E  +       +  L 
Sbjct: 1   MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQ-----YQRMLS 55

Query: 81  ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH 140
            LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R++
Sbjct: 56  TLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKN 115

Query: 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200
           ++E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + 
Sbjct: 116 RQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIH 175

Query: 201 ELQNTMEEEQK 211
           ELQ T+E ++K
Sbjct: 176 ELQQTLENDEK 186

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Bos taurus (taxid: 9913)

>sp|Q7SZ78|THOC7_XENLA THO complex subunit 7 homolog OS=Xenopus laevis GN=thoc7 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 5/191 (2%)

Query: 21  FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQ 80
            G   DD +I+ RLL        +  +  L K F  +     ++E  +       +  L 
Sbjct: 1   MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFVKWCNSGSQEEGYSQ-----YQRMLS 55

Query: 81  ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH 140
            LS  E  + K+  V D NLRE EN+ ++  +I      A   I + KKQ+ ++K  R++
Sbjct: 56  SLSQCEYSMGKTLLVHDMNLREMENYEKIYVDIESSIAAAHEKIAECKKQILQAKRIRKN 115

Query: 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200
           ++E +A+ K+I   P R ET + +  L+KE+  L          LELR+KQF +LL  + 
Sbjct: 116 RQEYDALAKVIEQHPDRHETLKQLEALDKELKQLSHTKENAEDKLELRRKQFHVLLSTIH 175

Query: 201 ELQNTMEEEQK 211
           ELQ T+E + K
Sbjct: 176 ELQQTLENDDK 186

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export.

Xenopus laevis (taxid: 8355)

>sp|Q7TMY4|THOC7_MOUSE THO complex subunit 7 homolog OS=Mus musculus GN=Thoc7 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 5/191 (2%)

Query: 21  FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQ 80
            G   DD +I+ RLL        +  +  L K F  +     ++E  +       +  L 
Sbjct: 1   MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWCNSGSQEEGYSQ-----YQRMLS 55

Query: 81  ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH 140
            LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R++
Sbjct: 56  TLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKN 115

Query: 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200
           ++E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + 
Sbjct: 116 RQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIH 175

Query: 201 ELQNTMEEEQK 211
           ELQ T+E + K
Sbjct: 176 ELQQTLENDDK 186

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export. The recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. DDX39B functions as a bridge between ALYREF/THOC4 and the THO complex.

Mus musculus (taxid: 10090)

>sp|Q6P643|THOC7_XENTR THO complex subunit 7 homolog OS=Xenopus tropicalis GN=thoc7 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 94/191 (49%), Gaps = 7/191 (3%)

Query: 21  FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQ 80
            G   DD +I+ RLL        +  +  L K F  +        ++ +  E   +  L 
Sbjct: 1   MGAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFLKWC-------NSGSQEEGQYQRMLS 53

Query: 81  ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH 140
            LS  E  + K+  V D NLRE EN+ ++  +I      A   I + KKQ+ ++K  R++
Sbjct: 54  SLSQCEFSMGKTLLVHDMNLREMENYEKIYVDIESSIAAAHEKIAECKKQILQAKRIRKN 113

Query: 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200
           ++E +A+ K+I   P R ET + +  L+KE+  L          LELR+KQF +LL  + 
Sbjct: 114 RQEYDALAKVIQQHPDRHETLKQLEALDKELKQLSHTKENVEDKLELRRKQFHVLLSTIH 173

Query: 201 ELQNTMEEEQK 211
           ELQ T+E + K
Sbjct: 174 ELQQTLENDDK 184

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DGZ3|THOC7_DANRE THO complex subunit 7 homolog OS=Danio rerio GN=thoc7 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 97/191 (50%), Gaps = 4/191 (2%)

Query: 21  FGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQ 80
            G   DD +I+ RLL        +  +  L K FT +       E+  +  +++    + 
Sbjct: 1   MGSITDDEVIRKRLLIDGDGAGDDRRINVLMKSFTKWCHSSFSPEEGMSQYQRM----MM 56

Query: 81  ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQH 140
            L+  E  + K+  V + NL+E EN+  +  +I +    A   I + KK+++ +K  R++
Sbjct: 57  SLAQCEFSMGKTLLVYNMNLKEMENYEGIYTDIEKSIASAHEKIAECKKEIQRAKRIRKN 116

Query: 141 KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD 200
           ++E +A+ ++I   P R ET + +  L+K++  L          LELRKKQF +LL  + 
Sbjct: 117 RQEYDALARVIKQHPDRHETLKQLEALDKDLQQLSHIKENVEDKLELRKKQFHVLLTTIQ 176

Query: 201 ELQNTMEEEQK 211
           ELQ T+E ++K
Sbjct: 177 ELQQTLENDEK 187

Component of the THO subcomplex of the TREX complex. The TREX complex specifically associates with spliced mRNA and not with unspliced pre-mRNA. It is recruited to spliced mRNAs by a transcription-independent mechanism. Binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export.

Danio rerio (taxid: 7955)

>sp|Q8IRJ8|THOC7_DROME THO complex protein 7 OS=Drosophila melanogaster GN=thoc7 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 91/184 (49%), Gaps = 6/184 (3%)

Query: 26  DDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTF 85
           D+ IIK RLL     T  +  +  L K+F  +        D+ +    +    + + +  
Sbjct: 23  DEEIIKQRLLIDGDGTGEDRRIVVLLKQFLKWA------SDSLDSNPIMYDRLMAQFAQC 76

Query: 86  EIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECE 145
           ++  LK+   +     E++N+ +L E      + AKA+IE  KK+L  +K  R++K E +
Sbjct: 77  KLTALKNVQTLQMIAGERDNYTQLVEHHEESIVLAKAEIESSKKELITAKQIRKNKMEYD 136

Query: 146 AIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNT 205
            +  LI  QP RSETQR I  + +EI  L  +     R  + R+  F LL++ + EL+  
Sbjct: 137 LLASLIQDQPDRSETQRHIETIRREIDDLVQKKLKMERKFQKRRNDFTLLMYTIHELEQQ 196

Query: 206 MEEE 209
           ++++
Sbjct: 197 LDQD 200

The THO complex is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress.

Drosophila melanogaster (taxid: 7227)

>sp|Q552L5|THOC7_DICDI THO complex subunit 7 homolog OS=Dictyostelium discoideum GN=thoc7 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 97/185 (52%), Gaps = 7/185 (3%)

Query: 25  EDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFV-LEIEKDEDNNNDCEKLAKAFLQELS 83
           E+D   K++++ +         +KK+ KK+  F+ +    +E+++ D + L    + E  
Sbjct: 11  EEDSFFKNKIVFKNFV------IKKVFKKYLQFINVTTGNNENSSVDLQSLCTQLINEFG 64

Query: 84  TFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEE 143
             E+ + K++ + +    E   + +L ++   +    K +I  LK+ L+  K +RQ+KE+
Sbjct: 65  HLELSVQKAQTISETCTDETLYYQQLSKQREIEIENEKKEIAILKETLDYEKKQRQYKEQ 124

Query: 144 CEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQ 203
             A+ K I  +P   +T++ I   +KE+  +  +    +  LELR KQF LLLH ++EL+
Sbjct: 125 YLALYKAINEKPSTEQTEKEIEKAQKELNEITDQTNKTTSKLELRTKQFQLLLHTLNELE 184

Query: 204 NTMEE 208
             ++E
Sbjct: 185 KNLDE 189

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
118489237	240	unknown [Populus trichocarpa x Populus d	0.995	0.995	0.854	1e-105
224124148	240	predicted protein [Populus trichocarpa]	0.995	0.995	0.845	1e-103
255558059	242	conserved hypothetical protein [Ricinus	0.995	0.987	0.842	1e-103
356549244	242	PREDICTED: THO complex subunit 7 homolog	1.0	0.991	0.809	1e-102
225435911	240	PREDICTED: THO complex subunit 7 homolog	0.995	0.995	0.829	1e-101
296083915	267	unnamed protein product [Vitis vinifera]	0.995	0.895	0.829	1e-101
357446907	242	THO complex subunit-like protein [Medica	1.0	0.991	0.800	1e-100
449460706	241	PREDICTED: THO complex subunit 7 homolog	1.0	0.995	0.800	1e-97
326496126	242	predicted protein [Hordeum vulgare subsp	1.0	0.991	0.735	4e-96
357144908	242	PREDICTED: THO complex subunit 7 homolog	1.0	0.991	0.727	5e-95

>gi|118489237|gb|ABK96424.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/240 (85%), Positives = 220/240 (91%), Gaps = 1/240 (0%)

Query: 2   LAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEI 61
           + KGRK+ GR ETV  NYAFGP EDDVIIKHRLLTRTTTTRGEPPLKKLQKKF S+V EI
Sbjct: 1   MLKGRKISGRGETVAANYAFGPLEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFASYVSEI 60

Query: 62  EKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAK 121
           EKDEDN NDC KL+KAFLQELSTFEIPLLKSKAVID+N+REKENFNELK++INRQ LQA+
Sbjct: 61  EKDEDNYNDCVKLSKAFLQELSTFEIPLLKSKAVIDSNVREKENFNELKDDINRQILQAQ 120

Query: 122 ADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAG 181
           ADIEDLKKQLEESKIERQHKEECEAIRKLIA QPPRS  Q++ITDLEKEIAALEAENTA 
Sbjct: 121 ADIEDLKKQLEESKIERQHKEECEAIRKLIATQPPRSLMQKVITDLEKEIAALEAENTAS 180

Query: 182 SRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGGSEAMAVD 240
           SRLLELRKKQF LLLHVVDELQNT+EE++KNLIEEMR+A EEQK GMEDA G SEAMAVD
Sbjct: 181 SRLLELRKKQFVLLLHVVDELQNTIEEDEKNLIEEMRVATEEQKNGMEDAGGVSEAMAVD 240

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124148|ref|XP_002319257.1| predicted protein [Populus trichocarpa] gi|222857633|gb|EEE95180.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/240 (84%), Positives = 219/240 (91%), Gaps = 1/240 (0%)

Query: 2   LAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEI 61
           + KGRK+ GR ETV  NYAFGP EDDVIIKHRLLTRTTTTRGEPPLKKLQKKF S+V EI
Sbjct: 1   MLKGRKISGRGETVAANYAFGPLEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFASYVSEI 60

Query: 62  EKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAK 121
           EKDEDN +DC KL+KAFLQELSTFEIPLLKSKAVID+N+REKENFNELK++INRQ LQA+
Sbjct: 61  EKDEDNYHDCVKLSKAFLQELSTFEIPLLKSKAVIDSNVREKENFNELKDDINRQILQAQ 120

Query: 122 ADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAG 181
           ADIEDLKKQLEESKIERQHKEECEAIRKLIA QPPRS  Q++ITDLEKEIAALEAENTA 
Sbjct: 121 ADIEDLKKQLEESKIERQHKEECEAIRKLIATQPPRSLMQKVITDLEKEIAALEAENTAS 180

Query: 182 SRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGGSEAMAVD 240
           SRLLELRKKQF LLLHVVDELQNT+EE++KNLIEEMR+A EEQK GMED  G SEAMAVD
Sbjct: 181 SRLLELRKKQFVLLLHVVDELQNTIEEDEKNLIEEMRVATEEQKNGMEDTGGVSEAMAVD 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558059|ref|XP_002520058.1| conserved hypothetical protein [Ricinus communis] gi|223540822|gb|EEF42382.1| conserved hypothetical protein [Ricinus communis]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/241 (84%), Positives = 220/241 (91%), Gaps = 2/241 (0%)

Query: 2   LAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEI 61
           + KGRK+ GR ETV  NYAFGP EDD++IKHRLLTRTTTTRGEPPLKKLQKKFTSFV+E+
Sbjct: 1   MLKGRKISGRGETVAANYAFGPLEDDIVIKHRLLTRTTTTRGEPPLKKLQKKFTSFVVEV 60

Query: 62  EK-DEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           EK DEDN NDC +L+KAFLQELSTFEIPLLKSKAVIDANLREKENF EL +EI RQ  QA
Sbjct: 61  EKNDEDNYNDCVRLSKAFLQELSTFEIPLLKSKAVIDANLREKENFTELIDEITRQISQA 120

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           + DIEDLKKQLEESKIERQHKEECEAIRKLIA+QPPRSETQ++I DLEKEIA LEAEN A
Sbjct: 121 QDDIEDLKKQLEESKIERQHKEECEAIRKLIAMQPPRSETQKLIEDLEKEIAGLEAENIA 180

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGGSEAMAV 239
           GSRLLELRKKQFALLLHVVDELQN++EE+QKNLIEEMRMA E+QK GMEDA GGSEAMAV
Sbjct: 181 GSRLLELRKKQFALLLHVVDELQNSIEEDQKNLIEEMRMATEDQKNGMEDADGGSEAMAV 240

Query: 240 D 240
           D
Sbjct: 241 D 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549244|ref|XP_003543006.1| PREDICTED: THO complex subunit 7 homolog [Glycine max]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/242 (80%), Positives = 224/242 (92%), Gaps = 2/242 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           ML K RKV  R E+V  NYAFGP EDDVIIKHRLLTRTTTTRG+PPLKKLQKKFTSFV E
Sbjct: 1   MLGKTRKVSARGESVAANYAFGPSEDDVIIKHRLLTRTTTTRGDPPLKKLQKKFTSFVSE 60

Query: 61  IEKDEDNN-NDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQ 119
           ++KDEDNN N+C+KLA+AFLQEL+TFEIPLLKSKA+++AN+REKENFNELKEE+NRQ LQ
Sbjct: 61  VDKDEDNNYNECDKLARAFLQELTTFEIPLLKSKAIVEANIREKENFNELKEEMNRQILQ 120

Query: 120 AKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENT 179
           A+ DIEDLKKQLEESK+ER+HKEECEAIRKLIA+QPPRSET ++I++LE EIAAL+AENT
Sbjct: 121 AQDDIEDLKKQLEESKVERRHKEECEAIRKLIAMQPPRSETMKVISELENEIAALDAENT 180

Query: 180 AGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGGSEAMA 238
           AGSRLLELRKKQFALLLHVVDELQNT+EEEQK+L+EEMRMA EE K GMED +GG+EAMA
Sbjct: 181 AGSRLLELRKKQFALLLHVVDELQNTIEEEQKSLVEEMRMATEELKNGMEDTNGGAEAMA 240

Query: 239 VD 240
           +D
Sbjct: 241 ID 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435911|ref|XP_002266622.1| PREDICTED: THO complex subunit 7 homolog isoform 1 [Vitis vinifera] gi|359479144|ref|XP_003632225.1| PREDICTED: THO complex subunit 7 homolog isoform 2 [Vitis vinifera] gi|359479146|ref|XP_003632226.1| PREDICTED: THO complex subunit 7 homolog isoform 3 [Vitis vinifera]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/241 (82%), Positives = 220/241 (91%), Gaps = 2/241 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           ML KGRKV GR E +  +YAFGP EDD IIKHRLLTRTTTTRGEPPLKKLQKKFTSF LE
Sbjct: 1   MLVKGRKVSGRGEAMAAHYAFGP-EDDTIIKHRLLTRTTTTRGEPPLKKLQKKFTSFTLE 59

Query: 61  IEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           IEKD DN +DCE+L+KAFLQE++TFEIPLLKSKAVIDANLREKENFNELK++INR  LQA
Sbjct: 60  IEKDTDNFSDCERLSKAFLQEMTTFEIPLLKSKAVIDANLREKENFNELKDDINRMILQA 119

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           +ADIEDLKKQLEESKIERQHKEECEAIR+LIA+QPPRSET++II++LE EIAALEAENTA
Sbjct: 120 QADIEDLKKQLEESKIERQHKEECEAIRRLIAMQPPRSETEKIISELENEIAALEAENTA 179

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMR-MAEEQKGGMEDASGGSEAMAV 239
           GSR LELRKKQFALLLHVVDELQNT+EEEQKNLIEE+R + EE K GMED +G SEAMAV
Sbjct: 180 GSRTLELRKKQFALLLHVVDELQNTIEEEQKNLIEEIRSLTEEHKNGMEDGNGVSEAMAV 239

Query: 240 D 240
           D
Sbjct: 240 D 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083915|emb|CBI24303.3| unnamed protein product [Vitis vinifera]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/241 (82%), Positives = 220/241 (91%), Gaps = 2/241 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           ML KGRKV GR E +  +YAFGP EDD IIKHRLLTRTTTTRGEPPLKKLQKKFTSF LE
Sbjct: 28  MLVKGRKVSGRGEAMAAHYAFGP-EDDTIIKHRLLTRTTTTRGEPPLKKLQKKFTSFTLE 86

Query: 61  IEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           IEKD DN +DCE+L+KAFLQE++TFEIPLLKSKAVIDANLREKENFNELK++INR  LQA
Sbjct: 87  IEKDTDNFSDCERLSKAFLQEMTTFEIPLLKSKAVIDANLREKENFNELKDDINRMILQA 146

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           +ADIEDLKKQLEESKIERQHKEECEAIR+LIA+QPPRSET++II++LE EIAALEAENTA
Sbjct: 147 QADIEDLKKQLEESKIERQHKEECEAIRRLIAMQPPRSETEKIISELENEIAALEAENTA 206

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMR-MAEEQKGGMEDASGGSEAMAV 239
           GSR LELRKKQFALLLHVVDELQNT+EEEQKNLIEE+R + EE K GMED +G SEAMAV
Sbjct: 207 GSRTLELRKKQFALLLHVVDELQNTIEEEQKNLIEEIRSLTEEHKNGMEDGNGVSEAMAV 266

Query: 240 D 240
           D
Sbjct: 267 D 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446907|ref|XP_003593729.1| THO complex subunit-like protein [Medicago truncatula] gi|355482777|gb|AES63980.1| THO complex subunit-like protein [Medicago truncatula] gi|388493192|gb|AFK34662.1| unknown [Medicago truncatula]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/241 (80%), Positives = 221/241 (91%), Gaps = 1/241 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           M  + RKV  R E V  NYAFGP  DDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFV E
Sbjct: 1   MQGRVRKVSARGEPVAANYAFGPSIDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVSE 60

Query: 61  IEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           ++KDEDN NDCEKLA+AFLQEL+TFEIPLLKSKA+++AN+REK+NFNELK+E+NRQ  QA
Sbjct: 61  VDKDEDNYNDCEKLARAFLQELTTFEIPLLKSKAIVEANVREKDNFNELKDEMNRQIAQA 120

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           + DIEDLKKQLEESK+ER+HKEECEAIRKLIAVQPPRSETQ+++++LEKEIAAL+AENTA
Sbjct: 121 QVDIEDLKKQLEESKVERRHKEECEAIRKLIAVQPPRSETQKVLSELEKEIAALDAENTA 180

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGGSEAMAV 239
           GSRLLELRKKQF+LLL VVDELQNT+EE+QK+L+EEMR+A EE K GMEDASGGS+AMAV
Sbjct: 181 GSRLLELRKKQFSLLLQVVDELQNTIEEDQKSLVEEMRLATEELKNGMEDASGGSDAMAV 240

Query: 240 D 240
           D
Sbjct: 241 D 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460706|ref|XP_004148086.1| PREDICTED: THO complex subunit 7 homolog [Cucumis sativus] gi|449483968|ref|XP_004156746.1| PREDICTED: THO complex subunit 7 homolog [Cucumis sativus]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 193/241 (80%), Positives = 214/241 (88%), Gaps = 1/241 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           M  + RKV  R E V  NYAFGP EDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE
Sbjct: 1   MSVRARKVSTRGEAVAANYAFGPLEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60

Query: 61  IEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           IEKD  NN+DCEKL++AFLQELSTFEIPLLKSKAV+DAN+REKE+F+E K+EIN+Q L A
Sbjct: 61  IEKDGSNNDDCEKLSRAFLQELSTFEIPLLKSKAVVDANIREKESFHEFKDEINKQILLA 120

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           + DIEDLKKQLEESKIERQHKEECEAIRKLIA QPPRS TQ+ I DLEKEIAAL++ENTA
Sbjct: 121 QDDIEDLKKQLEESKIERQHKEECEAIRKLIAAQPPRSVTQKTIVDLEKEIAALDSENTA 180

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRM-AEEQKGGMEDASGGSEAMAV 239
            SR+LELRKKQFALLLHVVDELQNT+E+EQK+LIEE R+ AEE K G++DASG  EAMAV
Sbjct: 181 SSRMLELRKKQFALLLHVVDELQNTIEDEQKSLIEETRITAEENKIGVDDASGSLEAMAV 240

Query: 240 D 240
           D
Sbjct: 241 D 241

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326496126|dbj|BAJ90684.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326504642|dbj|BAK06612.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 178/242 (73%), Positives = 209/242 (86%), Gaps = 2/242 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           ML KGR+V GR E +  +YAFGPHEDD IIKHRLLTR TTTRGEPPLKKLQKKF SF  E
Sbjct: 1   MLTKGRRVAGRGEDMSAHYAFGPHEDDAIIKHRLLTRITTTRGEPPLKKLQKKFMSFATE 60

Query: 61  IEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           +EKD DN NDCE+L KAFLQE++TFE+PLLKSKAV+DANLREKE+FNEL+ EI RQ LQA
Sbjct: 61  VEKDADNTNDCERLYKAFLQEINTFELPLLKSKAVVDANLREKESFNELQVEIQRQILQA 120

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           + DIEDLKKQLE+SKIERQHKEECEAIRKLI+ QPPRSET+++I +LEKEIA LEAE+ A
Sbjct: 121 QTDIEDLKKQLEQSKIERQHKEECEAIRKLISSQPPRSETEKLIANLEKEIANLEAESAA 180

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGG-SEAMA 238
            +R LELRKKQFALLLHVV+ELQ ++E+EQ+N+ +E+R A EE K  +E+ SGG S+AMA
Sbjct: 181 CTRTLELRKKQFALLLHVVEELQISIEDEQRNIADELRAATEEPKLSIEEGSGGASDAMA 240

Query: 239 VD 240
           VD
Sbjct: 241 VD 242

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357144908|ref|XP_003573456.1| PREDICTED: THO complex subunit 7 homolog isoform 1 [Brachypodium distachyon] gi|357144911|ref|XP_003573457.1| PREDICTED: THO complex subunit 7 homolog isoform 2 [Brachypodium distachyon]

 Score =  353 bits (905), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 176/242 (72%), Positives = 209/242 (86%), Gaps = 2/242 (0%)

Query: 1   MLAKGRKVPGRAETVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLE 60
           ML KGRKV GRA+ +  +YAFGPHEDD IIKHRLLTR TTTRGEPPLKKLQKKF SF  E
Sbjct: 1   MLTKGRKVAGRAQDISAHYAFGPHEDDAIIKHRLLTRITTTRGEPPLKKLQKKFISFTTE 60

Query: 61  IEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQA 120
           IEKD DN++DCEKL KAFLQE++TFE+PLLKSKAV+DAN+REKE+F+ L+ EI RQ LQA
Sbjct: 61  IEKDADNSSDCEKLYKAFLQEINTFELPLLKSKAVVDANIREKESFDGLQVEIQRQILQA 120

Query: 121 KADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTA 180
           + DIEDLKKQLE+SKIERQHKEECEAIRKLI +QPPRSET+++I DLEKEIA L AE  A
Sbjct: 121 QTDIEDLKKQLEQSKIERQHKEECEAIRKLICLQPPRSETEKLIADLEKEIANLGAETAA 180

Query: 181 GSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMA-EEQKGGMEDASGG-SEAMA 238
            +R LELRKKQFALLLHVV+ELQ ++E+EQ+++ +E+R+A EE K  +E+ SGG S+AMA
Sbjct: 181 CTRTLELRKKQFALLLHVVEELQMSIEDEQRSIADELRVANEEPKMSIEEGSGGASDAMA 240

Query: 239 VD 240
           VD
Sbjct: 241 VD 242

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2075377	236	THO7 "AT3G02950" [Arabidopsis	0.958	0.974	0.689	5.2e-81
TAIR|locus:2149020	233	THO7 [Arabidopsis thaliana (ta	0.966	0.995	0.680	2.6e-79
UNIPROTKB|E2R2N6	152	THOC7 "Uncharacterized protein	0.591	0.934	0.368	1.2e-17
UNIPROTKB|F6XEL1	197	THOC7 "Uncharacterized protein	0.591	0.720	0.368	1.2e-17
UNIPROTKB|Q3SZ60	204	THOC7 "THO complex subunit 7 h	0.808	0.950	0.298	3.2e-17
UNIPROTKB|Q6I9Y2	204	THOC7 "THO complex subunit 7 h	0.808	0.950	0.298	3.2e-17
UNIPROTKB|F1SGF4	204	THOC7 "Uncharacterized protein	0.808	0.950	0.298	3.2e-17
UNIPROTKB|F1MSQ1	198	F1MSQ1 "Uncharacterized protei	0.591	0.717	0.361	4.1e-17
RGD|1305475	198	Thoc7 "THO complex 7 homolog (	0.591	0.717	0.361	6.7e-17
MGI|MGI:1913481	204	Thoc7 "THO complex 7 homolog (	0.808	0.950	0.298	8.6e-17

TAIR|locus:2075377 THO7 "AT3G02950" [Arabidopsis thaliana (taxid:3702)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 160/232 (68%), Positives = 193/232 (83%)

Query:     1 MLAKGRKVPGRAETV--PVNYAFGPHEDDVIIKHXXXXXXXXXXGEPPLKKLQKKFTSFV 58
             M  K R++ GR ETV   VNYAF P +DD II++          GEPPLKKLQKKFTSFV
Sbjct:     1 MSVKARRISGRLETVVTKVNYAFDPVDDDKIIRNRLLTRTTTTRGEPPLKKLQKKFTSFV 60

Query:    59 LEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTL 118
             LE++K+E+N NDC +LAKAFLQELSTFEIPLLKS+AV++ANLREKE+FNE+K+E  RQ +
Sbjct:    61 LEVDKEEENYNDCGRLAKAFLQELSTFEIPLLKSQAVVEANLREKESFNEVKDETERQIM 120

Query:   119 QAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAEN 178
             QAKA+IEDLKKQLEESKI+RQHKEECE IRKLI+ QPPRSET+++I +L KEIA LEAE+
Sbjct:   121 QAKAEIEDLKKQLEESKIDRQHKEECETIRKLISAQPPRSETEKVIYELNKEIAELEAES 180

Query:   179 TAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGMEDA 230
             TA  RLLELRKKQFALL+HVVDELQNTME+EQK+L++E+R A E +  + DA
Sbjct:   181 TASWRLLELRKKQFALLMHVVDELQNTMEDEQKSLVDEIRSASEDQRNITDA 232

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149020 THO7 [Arabidopsis thaliana (taxid:3702)]

 Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
 Identities = 164/241 (68%), Positives = 194/241 (80%)

Query:     1 MLAKGRK-VPGRAETVPVNYAFGPHEDDVIIKHXXXXXXXXXXGEPPLKKLQKKFTSFVL 59
             M  + R+ V GR+ETV  NYAF P  DD II++          GEPPLKKLQKKFTSFV+
Sbjct:     1 MSVRARRIVSGRSETVAANYAFDPLHDDKIIRNRLLTRTTTTRGEPPLKKLQKKFTSFVI 60

Query:    60 EIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQ 119
             E++K+EDN ++C +LAKAFLQELS FEIPLLKS+ V+ ANLREKENFNELK+E NRQ +Q
Sbjct:    61 ELDKEEDNYSECGRLAKAFLQELSAFEIPLLKSQVVVAANLREKENFNELKDETNRQIMQ 120

Query:   120 AKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENT 179
             A+ADIEDLKKQLEESKIERQ KEECEAIRKLI+ QPPRSETQ++I +L+KEIA LEAENT
Sbjct:   121 AQADIEDLKKQLEESKIERQQKEECEAIRKLISAQPPRSETQKVIHELKKEIAELEAENT 180

Query:   180 AGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGMEDASGGSEAMAV 239
             A  RLLELRKKQFALLLHVVDELQ TME+EQK+++EEM     Q+    D   G+EAM++
Sbjct:   181 ASWRLLELRKKQFALLLHVVDELQETMEDEQKSMVEEM-----QRNITAD---GAEAMSI 232

Query:   240 D 240
             D
Sbjct:   233 D 233

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|E2R2N6 THOC7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 53/144 (36%), Positives = 82/144 (56%)

Query:    79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138
             L  LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R
Sbjct:     2 LSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIR 61

Query:   139 QHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198
             ++++E +A+ K+I   P R ET R +  L KE+  L     +    LELR+KQF +LL  
Sbjct:    62 KNRQEYDALAKVIQHHPDRHETLRELESLGKELEHLSHIKESVEDKLELRRKQFHVLLST 121

Query:   199 VDELQNTMEEEQKNLIEEMRMAEE 222
             + ELQ T+E ++K  + E+  A+E
Sbjct:   122 IHELQQTLENDEK--LSEVEEAQE 143

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|F6XEL1 THOC7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 53/144 (36%), Positives = 82/144 (56%)

Query:    79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138
             L  LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R
Sbjct:    47 LSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIR 106

Query:   139 QHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198
             ++++E +A+ K+I   P R ET R +  L KE+  L     +    LELR+KQF +LL  
Sbjct:   107 KNRQEYDALAKVIQHHPDRHETLRELESLGKELEHLSHIKESVEDKLELRRKQFHVLLST 166

Query:   199 VDELQNTMEEEQKNLIEEMRMAEE 222
             + ELQ T+E ++K  + E+  A+E
Sbjct:   167 IHELQQTLENDEK--LSEVEEAQE 188

GO:0006397 "mRNA processing" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

UNIPROTKB|Q3SZ60 THOC7 "THO complex subunit 7 homolog" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 60/201 (29%), Positives = 100/201 (49%)

Query:    22 GPHEDDVIIKHXXXXXXXXXXGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQE 81
             G   DD +I+            +  +  L K F  +       E+  +  +++    L  
Sbjct:     2 GAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWC-NSGSQEEGYSQYQRM----LST 56

Query:    82 LSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHK 141
             LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R+++
Sbjct:    57 LSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNR 116

Query:   142 EECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201
             +E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + E
Sbjct:   117 QEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHE 176

Query:   202 LQNTMEEEQKNLIEEMRMAEE 222
             LQ T+E ++K  + E+  A+E
Sbjct:   177 LQQTLENDEK--LSEVEEAQE 195

GO:0005737 "cytoplasm" evidence=IEA

GO:0051028 "mRNA transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

UNIPROTKB|Q6I9Y2 THOC7 "THO complex subunit 7 homolog" [Homo sapiens (taxid:9606)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 60/201 (29%), Positives = 100/201 (49%)

Query:    22 GPHEDDVIIKHXXXXXXXXXXGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQE 81
             G   DD +I+            +  +  L K F  +       E+  +  +++    L  
Sbjct:     2 GAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWC-NSGSQEEGYSQYQRM----LST 56

Query:    82 LSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHK 141
             LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R+++
Sbjct:    57 LSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNR 116

Query:   142 EECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201
             +E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + E
Sbjct:   117 QEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHE 176

Query:   202 LQNTMEEEQKNLIEEMRMAEE 222
             LQ T+E ++K  + E+  A+E
Sbjct:   177 LQQTLENDEK--LSEVEEAQE 195

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0000347 "THO complex" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=IDA

GO:0000346 "transcription export complex" evidence=IDA

GO:0000445 "THO complex part of transcription export complex" evidence=IDA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SGF4 THOC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 60/201 (29%), Positives = 100/201 (49%)

Query:    22 GPHEDDVIIKHXXXXXXXXXXGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQE 81
             G   DD +I+            +  +  L K F  +       E+  +  +++    L  
Sbjct:     2 GAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWC-NSGSQEEGYSQYQRM----LST 56

Query:    82 LSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHK 141
             LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R+++
Sbjct:    57 LSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNR 116

Query:   142 EECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201
             +E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + E
Sbjct:   117 QEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHE 176

Query:   202 LQNTMEEEQKNLIEEMRMAEE 222
             LQ T+E ++K  + E+  A+E
Sbjct:   177 LQQTLENDEK--LSEVEEAQE 195

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|F1MSQ1 F1MSQ1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 52/144 (36%), Positives = 82/144 (56%)

Query:    79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138
             L  LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R
Sbjct:    48 LSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIR 107

Query:   139 QHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198
             ++++E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  
Sbjct:   108 KNRQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLST 167

Query:   199 VDELQNTMEEEQKNLIEEMRMAEE 222
             + ELQ T+E ++K  + E+  A+E
Sbjct:   168 IHELQQTLENDEK--LSEVEEAQE 189

GO:0006397 "mRNA processing" evidence=IEA

GO:0000445 "THO complex part of transcription export complex" evidence=IEA

RGD|1305475 Thoc7 "THO complex 7 homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 52/144 (36%), Positives = 81/144 (56%)

Query:    79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER 138
             L  LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R
Sbjct:    48 LSTLSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIR 107

Query:   139 QHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV 198
             ++++E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  
Sbjct:   108 KNRQEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLST 167

Query:   199 VDELQNTMEEEQKNLIEEMRMAEE 222
             + ELQ T+E + K  + E+  A+E
Sbjct:   168 IHELQQTLENDDK--LSEVEEAQE 189

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

MGI|MGI:1913481 Thoc7 "THO complex 7 homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 60/201 (29%), Positives = 99/201 (49%)

Query:    22 GPHEDDVIIKHXXXXXXXXXXGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQE 81
             G   DD +I+            +  +  L K F  +       E+  +  +++    L  
Sbjct:     2 GAVTDDEVIRKRLLIDGDGAGDDRRINLLVKSFIKWC-NSGSQEEGYSQYQRM----LST 56

Query:    82 LSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHK 141
             LS  E  + K+  V D NLRE EN+ ++ +EI      A   I + KKQ+ ++K  R+++
Sbjct:    57 LSQCEFSMGKTLLVYDMNLREMENYEKIYKEIECSIAGAHEKIAECKKQILQAKRIRKNR 116

Query:   142 EECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE 201
             +E +A+ K+I   P R ET + +  L KE+  L     +    LELR+KQF +LL  + E
Sbjct:   117 QEYDALAKVIQHHPDRHETLKELEALGKELEHLSHIKESVEDKLELRRKQFHVLLSTIHE 176

Query:   202 LQNTMEEEQKNLIEEMRMAEE 222
             LQ T+E + K  + E+  A+E
Sbjct:   177 LQQTLENDDK--LSEVDEAQE 195

GO:0000346 "transcription export complex" evidence=ISO

GO:0000347 "THO complex" evidence=ISO

GO:0000445 "THO complex part of transcription export complex" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006406 "mRNA export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0046784 "intronless viral mRNA export from host nucleus" evidence=ISO

GO:0051028 "mRNA transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00130799	hypothetical protein (240 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.I.6978.1	hypothetical protein (609 aa)						•	•		0.848
	estExt_fgenesh4_pg.C_LG_I3367	SubName- Full=Putative uncharacterized protein; (313 aa)					•		•		0.630
	estExt_fgenesh4_pm.C_400112	hypothetical protein (697 aa)							•		0.438

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
pfam05615	132	pfam05615, THOC7, Tho complex subunit 7	2e-19

>gnl|CDD|218657 pfam05615, THOC7, Tho complex subunit 7

 Score = 80.4 bits (199), Expect = 2e-19
 Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 9/140 (6%)

Query: 27  DVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFE 86
           D +IK RLL        + P K+L K+   +V      +    + +   +  L EL+  E
Sbjct: 1   DEVIKQRLLIG-----EDRPFKRLLKRLLKWVKL---SDSITEEDKFSREDLLAELAQLE 52

Query: 87  IPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEA 146
           + +L+ + V++ N RE+EN+ + KEEI      AK +IE+LKK+LEE+K  R++++E + 
Sbjct: 53  LSMLRLQFVLEMNERERENYEQEKEEIETTIENAKDEIEELKKELEEAKRIRKNRKEYDE 112

Query: 147 IRKLIAVQP-PRSETQRIIT 165
           + K I   P  R+ET+  + 
Sbjct: 113 LAKKITSLPVTRAETEEKLG 132

The Tho complex is involved in transcription elongation and mRNA export from the nucleus. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG3215	222	consensus Uncharacterized conserved protein [Funct	100.0
PF05615	139	THOC7: Tho complex subunit 7; InterPro: IPR008501	100.0
KOG3215	222	consensus Uncharacterized conserved protein [Funct	97.37
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.8
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	92.64
PF14662	193	CCDC155: Coiled-coil region of CCDC155	92.43
PRK09039	343	hypothetical protein; Validated	92.13
PRK11637	428	AmiB activator; Provisional	91.84
PRK04863	1486	mukB cell division protein MukB; Provisional	90.75
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	90.33
PRK02224	880	chromosome segregation protein; Provisional	90.08
PHA02562	562	46 endonuclease subunit; Provisional	89.97
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	89.71
PHA02562	562	46 endonuclease subunit; Provisional	89.59
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	89.55
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.39
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	88.27
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.87
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	86.27
KOG0933	1174	consensus Structural maintenance of chromosome pro	86.25
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	86.08
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	85.73
COG2433	652	Uncharacterized conserved protein [Function unknow	84.98
PRK04863	1486	mukB cell division protein MukB; Provisional	83.32
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	83.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	82.73
PRK11637	428	AmiB activator; Provisional	82.69
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	82.68
PRK09343	121	prefoldin subunit beta; Provisional	82.32
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	82.3
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	81.53

>KOG3215 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.5e-47  Score=325.86  Aligned_cols=221  Identities=38%  Similarity=0.489  Sum_probs=212.7

Q ss_pred             CCCCCCCCCCCChhHHHHHhhhccCCCCCCCchHHHHHHHHHHhhhhcCCCCCChhHHHHHHHHHHHHHhccchhhhhHH
Q 026335           14 TVPVNYAFGPHEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSK   93 (240)
Q Consensus        14 ~~~~~~~l~~~~edeiIk~RLL~dg~~~gderpLkrL~Kkf~~~~~~~~~~~d~~~~~~~l~e~~l~eLa~~E~s~~K~~   93 (240)
                      ++.++|+++++.+|.+||+||+++|+|+|++||++.|.|+|..|++..+.++.++++|.++...||.+|.+||++|.|++
T Consensus         2 ~~~a~~a~~~ltddk~iR~rll~~ge~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka~L~~Lsq~E~~mlKtq   81 (222)
T KOG3215|consen    2 YDRAQFAQCKLTDDKNIRTRLLIDGEGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKALLASLSQDEPSMLKTQ   81 (222)
T ss_pred             chHHHhhcCccchhHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHhhcccchHHHH
Confidence            45589999999999999999999999999999999999999999999988888999999999999999999999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 026335           94 AVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAA  173 (240)
Q Consensus        94 ~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~  173 (240)
                      .|..||.||+++|.+.+.+|+.+|+.++++|+.||.+|.+||++|+||++|++|+++|..+|||.||.+.|.+|.++|++
T Consensus        82 rv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi~r~nrqe~~~l~kvis~~p~RsEt~k~l~el~kelee  161 (222)
T KOG3215|consen   82 RVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKIVRLNRQEYSALSKVISDCPARSETDKDLNELKKELEE  161 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhcCCcCCCCCCCccccCC
Q 026335          174 LEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGMEDASGGSEAMAVD  240 (240)
Q Consensus       174 L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~de~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  240 (240)
                      +++.+.....+|+.||+||+.||+++++||.++++|+.+..++..      ...+++++.++||++|
T Consensus       162 l~~~~~s~~~klelrRkqf~~lm~~~~elQ~amedeedt~v~e~~------~~de~~~~vtea~~~d  222 (222)
T KOG3215|consen  162 LDDLNNSTETKLELRRKQFKYLMVSTEELQCAMEDEEDTVVEESI------DADEDDVDVTEANSED  222 (222)
T ss_pred             HHHHhhhhHHHHHHHhhcchHHHhhHHHHHhhhhhhhhhHHHhcc------ccchhhhhhhcccCCC
Confidence            999999999999999999999999999999999999988887776      6666778889999987

>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []

Probab=100.00  E-value=1.2e-35  Score=243.40  Aligned_cols=136  Identities=40%  Similarity=0.606  Sum_probs=128.5

Q ss_pred             hHHHHHhhhccCCCCCCCchHHHHHHHHHHhhhhcCCCCCCh--hHHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHH
Q 026335           27 DVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVLEIEKDEDNN--NDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKE  104 (240)
Q Consensus        27 deiIk~RLL~dg~~~gderpLkrL~Kkf~~~~~~~~~~~d~~--~~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e  104 (240)
                      |+|||+|||++|   |+|||||+|+|+|++|++..++++.+.  ..++.+++.|+.+|++|+|+|.|++++++||.+|++
T Consensus         1 d~iik~RLl~~~---~~dr~l~~l~k~~~~~~~~~~~~~~~~~~e~~~~~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e   77 (139)
T PF05615_consen    1 DEIIKRRLLIDG---GDDRPLKRLLKRFLKWCNLSDSILSGQPSEESQFLYERLLKELAQFEFSILKSQLILEMNKRERE   77 (139)
T ss_pred             CHHHHHHHhhcc---cCchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999998   899999999999999999987554433  667888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC-ChHHHHHHHH
Q 026335          105 NFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP-PRSETQRIIT  165 (240)
Q Consensus       105 ~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P-sR~et~~~I~  165 (240)
                      +|++++.+|+.+|+.++.+|++||.+|..||.+|+||++||+||+.|+++| ||++|+++|+
T Consensus        78 ~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I~~~p~sR~e~~~~l~  139 (139)
T PF05615_consen   78 NYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKINSQPTSREETEKELE  139 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999 9999998873

This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.

>KOG3215 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.0062  Score=53.65  Aligned_cols=119  Identities=22%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             HHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHH
Q 026335           81 ELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSET  160 (240)
Q Consensus        81 eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et  160 (240)
                      .|+.|-+.--|.-.-.-+-.-+..+|....+.|+..+...+.+|+.-+..+..|++++++     -|+.++.-.||+-.|
T Consensus         6 ~~a~~~ltddk~iR~rll~~ge~~~~dr~v~~l~ksf~~~~~E~~kee~~y~ea~ri~Ka-----~L~~Lsq~E~~mlKt   80 (222)
T KOG3215|consen    6 QFAQCKLTDDKNIRTRLLIDGEGDGGDRLVEHLEKSFVLAKAEIEKEEKEYSEAKRIRKA-----LLASLSQDEPSMLKT   80 (222)
T ss_pred             HhhcCccchhHHHHHHHhhcCCCCCCcHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHH-----HHHHHhhcccchHHH
Confidence            344444444443333445566788999999999999999999999999999999999998     899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQN  204 (240)
Q Consensus       161 ~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~  204 (240)
                      +.-++.-..|++.+..-....++.+..+++-|.++...|+++..
T Consensus        81 qrv~e~nlre~e~~~q~k~Eiersi~~a~~kie~lkkql~eaKi  124 (222)
T KOG3215|consen   81 QRVIEMNLREIENLVQKKLEIERSIQKARNKIELLKKQLHEAKI  124 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999986

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.80  E-value=5  Score=36.33  Aligned_cols=113  Identities=21%  Similarity=0.215  Sum_probs=70.7

Q ss_pred             cchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCh-HHHHHH
Q 026335           85 FEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPR-SETQRI  163 (240)
Q Consensus        85 ~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR-~et~~~  163 (240)
                      ....+.+..--...-..+++.|.....+++.+|..++..|..+...|..++..+    +|.+|-..|...-.| ......
T Consensus        36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~----e~~aL~~E~~~ak~r~~~le~e  111 (239)
T COG1579          36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDER----ELRALNIEIQIAKERINSLEDE  111 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444555678899999999999999999999999999996666654    688887777654332 233444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          164 ITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDE  201 (240)
Q Consensus       164 I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~  201 (240)
                      |..|.+++..|+.+...+...+..=++.|..+-..+..
T Consensus       112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~  149 (239)
T COG1579         112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEE  149 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544444444444444444444333

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=92.64  E-value=2.4  Score=35.62  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=21.7

Q ss_pred             HhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          151 IAVQPPRSETQRIITDLEKEIAALEAENTAGSR  183 (240)
Q Consensus       151 I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~  183 (240)
                      +++.|+-++....|..|+.+|..++.....+..
T Consensus       105 L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen  105 LSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556677777777777777777766666554443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=92.43  E-value=7.1  Score=34.30  Aligned_cols=130  Identities=16%  Similarity=0.148  Sum_probs=102.2

Q ss_pred             HHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC--
Q 026335           77 AFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ--  154 (240)
Q Consensus        77 ~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~--  154 (240)
                      +++..+.-++.+=.|+.=-.....+.++..+....++-.+|...+..+-.+..-|..||.+-..=+.--.+++.+.+.  
T Consensus         5 dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~   84 (193)
T PF14662_consen    5 DLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENR   84 (193)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677777777777777777778888999999999999999999999999999999998887777666777777642  


Q ss_pred             ---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          155 ---PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTM  206 (240)
Q Consensus       155 ---PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l  206 (240)
                         --...+++....|-.+|+.|..++..+..-.+.=+++..-|-..-..|+..|
T Consensus        85 ~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql  139 (193)
T PF14662_consen   85 SLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL  139 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence               3456777888888999999999998888777766666666666666666666

>PRK09039 hypothetical protein; Validated

Probab=92.13  E-value=11  Score=35.64  Aligned_cols=128  Identities=14%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHH
Q 026335           75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEE--------SKIERQHKEECEA  146 (240)
Q Consensus        75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~--------Ak~~R~nK~EYD~  146 (240)
                      ...+-.+|+.++..|.-+.-+..++.......+..-..+..+...++.+-+.|+..+..        ..+...+..+++.
T Consensus        48 i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~  127 (343)
T PRK09039         48 ISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS  127 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHH
Confidence            44556678888888888888888888888888888888888888888888888775442        2333445567777


Q ss_pred             HHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          147 IRKLIA-VQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL  202 (240)
Q Consensus       147 LAk~I~-~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L  202 (240)
                      .-..++ .+|.-.-...+|+.|+..|+.|+......+..-..-+.++..|=..|+..
T Consensus       128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777 47888888888888888888888888888888877777777774444333

>PRK11637 AmiB activator; Provisional

Probab=91.84  E-value=6.2  Score=37.87  Aligned_cols=39  Identities=23%  Similarity=0.261  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV  198 (240)
Q Consensus       160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~  198 (240)
                      ++..|..++.+|..++.+...+...+..++++|...+..
T Consensus        94 ~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra  132 (428)
T PRK11637         94 TQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA  132 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555555555544444433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=90.75  E-value=30  Score=38.94  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHH
Q 026335           99 NLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP--------PRSETQRIITDLEKE  170 (240)
Q Consensus        99 N~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P--------sR~et~~~I~~Le~E  170 (240)
                      ..+.++.-+.-..+|...+.....++..|+.+++.|+.-+....+|-.+...|..+.        ...+....++.++.+
T Consensus       298 A~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleee  377 (1486)
T PRK04863        298 SRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQ  377 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556666677777777777777777777777777776666555445554332        223334444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          171 IAALEAENTAGSRLLELRKKQFALLLHVVDELQNT  205 (240)
Q Consensus       171 i~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~  205 (240)
                      +..+..+...+...+..-+.+...+...+..++..
T Consensus       378 leeleeEleelEeeLeeLqeqLaelqqel~elQ~e  412 (1486)
T PRK04863        378 QEENEARAEAAEEEVDELKSQLADYQQALDVQQTR  412 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444555554444444444444444433

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=90.33  E-value=5.7  Score=34.42  Aligned_cols=84  Identities=21%  Similarity=0.322  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHH----H
Q 026335          108 ELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGS----R  183 (240)
Q Consensus       108 ~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~----~  183 (240)
                      .....+..+++..+..|..|+..|+.++..|..-             ..|......++.|++++..|+.+...|.    .
T Consensus        69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-------------~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~  135 (188)
T PF03962_consen   69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-------------EEREELLEELEELKKELKELKKELEKYSENDPE  135 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3445677778888999999999999987776543             4588888999999999999998888664    3


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 026335          184 LLELRKKQFALLLHVVDELQN  204 (240)
Q Consensus       184 kl~~RrkQF~~Ll~~i~~Lq~  204 (240)
                      +++.-+.....+...++....
T Consensus       136 ~i~~~~~~~~~~~~~anrwTD  156 (188)
T PF03962_consen  136 KIEKLKEEIKIAKEAANRWTD  156 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            455555555555555444433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PRK02224 chromosome segregation protein; Provisional

Probab=90.08  E-value=16  Score=38.02  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          109 LKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ-PPRSETQRIITDLEKEIAALEAENTAGS  182 (240)
Q Consensus       109 ~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~-PsR~et~~~I~~Le~Ei~~L~~e~~~~~  182 (240)
                      ....++.++..++.+.+.++..+...+.....+..|+.+-..|... -..++....+..|++++..|......+.
T Consensus       483 ~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~  557 (880)
T PRK02224        483 ELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKR  557 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444555666666555432 1234444455555555555544443333

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.97  E-value=4.8  Score=39.34  Aligned_cols=26  Identities=15%  Similarity=0.250  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          109 LKEEINRQTLQAKADIEDLKKQLEES  134 (240)
Q Consensus       109 ~~~~Ie~~i~~~k~~Ie~LK~eL~~A  134 (240)
                      ....|...+...+.++..+...+...
T Consensus       300 ~~~~l~d~i~~l~~~l~~l~~~i~~~  325 (562)
T PHA02562        300 RITKIKDKLKELQHSLEKLDTAIDEL  325 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555554444433

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=89.71  E-value=17  Score=33.74  Aligned_cols=95  Identities=25%  Similarity=0.170  Sum_probs=54.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHH
Q 026335           98 ANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIER-QHKEECEAIRKLIAV----QPPRSETQRIITDLEKEIA  172 (240)
Q Consensus        98 aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R-~nK~EYD~LAk~I~~----~PsR~et~~~I~~Le~Ei~  172 (240)
                      ....+...|+.....++.++...+.+|..++.++..++... ..+..|+..-+.+.+    ..........+..++.++.
T Consensus       134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~l~  213 (423)
T TIGR01843       134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELG  213 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            34455666777777777777777777777777777666443 333456666555553    2333345555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 026335          173 ALEAENTAGSRLLELRKKQF  192 (240)
Q Consensus       173 ~L~~e~~~~~~kl~~RrkQF  192 (240)
                      .++.+...+...+..-+.++
T Consensus       214 ~~~~~l~~~~~~l~~~~~~~  233 (423)
T TIGR01843       214 RLEAELEVLKRQIDELQLER  233 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555444443333

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=89.59  E-value=18  Score=35.28  Aligned_cols=17  Identities=0%  Similarity=0.053  Sum_probs=9.0

Q ss_pred             HHHhHHHHHHHHHHHhc
Q 026335          137 ERQHKEECEAIRKLIAV  153 (240)
Q Consensus       137 ~R~nK~EYD~LAk~I~~  153 (240)
                      +...+.+|+.+.+.+..
T Consensus       215 i~~l~~e~~~l~~~~~~  231 (562)
T PHA02562        215 IARKQNKYDELVEEAKT  231 (562)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44455556655555544

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=89.55  E-value=31  Score=36.45  Aligned_cols=22  Identities=18%  Similarity=0.098  Sum_probs=8.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 026335          163 IITDLEKEIAALEAENTAGSRL  184 (240)
Q Consensus       163 ~I~~Le~Ei~~L~~e~~~~~~k  184 (240)
                      .|..++.++..+..+...+...
T Consensus       449 ~l~~l~~~~~~~~~~~~~~~~~  470 (1164)
T TIGR02169       449 EIKKQEWKLEQLAADLSKYEQE  470 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.39  E-value=18  Score=32.24  Aligned_cols=42  Identities=14%  Similarity=0.194  Sum_probs=27.1

Q ss_pred             hhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335           89 LLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQ  130 (240)
Q Consensus        89 ~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~e  130 (240)
                      ..+..-...........+.+.+..+..++..+..+++.|+..
T Consensus        30 ~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~   71 (251)
T PF11932_consen   30 QQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY   71 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555566666777777777777777777777766653

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=88.27  E-value=37  Score=35.70  Aligned_cols=21  Identities=29%  Similarity=0.319  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 026335          165 TDLEKEIAALEAENTAGSRLL  185 (240)
Q Consensus       165 ~~Le~Ei~~L~~e~~~~~~kl  185 (240)
                      ..++.++..+..+...+...+
T Consensus       436 ~~~~~~~~~~~~~~~~l~~~~  456 (1179)
T TIGR02168       436 KELQAELEELEEELEELQEEL  456 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444433333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.87  E-value=29  Score=35.13  Aligned_cols=113  Identities=17%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             HHHHHhccchhhhhH-HHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhH-HHHHHH
Q 026335           78 FLQELSTFEIPLLKS-KAVIDANLREKE-------NFNELKEEINRQTLQAKADIEDLKKQLEESKIE-RQHK-EECEAI  147 (240)
Q Consensus        78 ~l~eLa~~E~s~~K~-~~v~~aN~rE~e-------~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~-R~nK-~EYD~L  147 (240)
                      +..+|..++-.+.+- .-|..+-..|+-       .-...+...+.+|...+.++.+||..+..+... +..+ .-++.+
T Consensus        68 L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~  147 (546)
T KOG0977|consen   68 LEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYL  147 (546)
T ss_pred             HHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            445555555554442 223333333333       333344444555666666666666666666222 2222 233344


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          148 RKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKK  190 (240)
Q Consensus       148 Ak~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rrk  190 (240)
                      ....+-.-...-....|..|+.++..|..++..+...|..=|+
T Consensus       148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK  190 (546)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            4433444556666677777777777777777766666665444

>TIGR00606 rad50 rad50

Probab=86.27  E-value=59  Score=35.95  Aligned_cols=38  Identities=11%  Similarity=0.214  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          158 SETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALL  195 (240)
Q Consensus       158 ~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~L  195 (240)
                      ++.+..|..++.++..+..+...+...+....+++..|
T Consensus       825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=86.25  E-value=37  Score=36.82  Aligned_cols=95  Identities=19%  Similarity=0.327  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          111 EEINRQTLQAKADIEDLKKQLEESKIERQH-KEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRK  189 (240)
Q Consensus       111 ~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~n-K~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rr  189 (240)
                      .++...+.....++++++.++..-....+. -.+|-.|=+.++.+  -..-...+..|+++|..+....+.-...|+.|.
T Consensus       737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~--~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~  814 (1174)
T KOG0933|consen  737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDA--KANRERRLKDLEKEIKTAKQRAEESSKELEKRE  814 (1174)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh--hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555544332221 12222333333322  223345566666777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 026335          190 KQFALLLHVVDELQNTME  207 (240)
Q Consensus       190 kQF~~Ll~~i~~Lq~~l~  207 (240)
                      .-|..|.-.+.+|...+.
T Consensus       815 ~e~e~l~lE~e~l~~e~~  832 (1174)
T KOG0933|consen  815 NEYERLQLEHEELEKEIS  832 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777666666665554

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=86.08  E-value=15  Score=28.84  Aligned_cols=84  Identities=17%  Similarity=0.188  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          113 INRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQP---PRSETQRIITDLEKEIAALEAENTAGSRLLELRK  189 (240)
Q Consensus       113 Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~P---sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~Rr  189 (240)
                      +...+.....++.+++..+..=...-....-|-.+..+....|   -......+++.++..|..|......+..++..=+
T Consensus        22 l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q  101 (110)
T TIGR02338        22 VATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQ  101 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333433333333333346667777777777654   2344456666666666677666666666666666


Q ss_pred             HHHHHHH
Q 026335          190 KQFALLL  196 (240)
Q Consensus       190 kQF~~Ll  196 (240)
                      ++|..++
T Consensus       102 ~~l~~~~  108 (110)
T TIGR02338       102 EKIQEAL  108 (110)
T ss_pred             HHHHHHh
Confidence            6655544

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.73  E-value=27  Score=32.60  Aligned_cols=82  Identities=26%  Similarity=0.306  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          107 NELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLE  186 (240)
Q Consensus       107 ~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~  186 (240)
                      ......++.++.....+...+..+|......+                   ++..++|..|+.+...|..+...+-....
T Consensus        42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~-------------------~~l~~el~~le~e~~~l~~eE~~~~~~~n  102 (314)
T PF04111_consen   42 EEDIEELEEELEKLEQEEEELLQELEELEKER-------------------EELDQELEELEEELEELDEEEEEYWREYN  102 (314)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666666666665554432                   34445666777777777665554433333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 026335          187 LRKKQFALLLHVVDELQNTME  207 (240)
Q Consensus       187 ~RrkQF~~Ll~~i~~Lq~~l~  207 (240)
                      .-..+...+....+.|...++
T Consensus       103 ~~~~~l~~~~~e~~sl~~q~~  123 (314)
T PF04111_consen  103 ELQLELIEFQEERDSLKNQYE  123 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.98  E-value=23  Score=36.32  Aligned_cols=84  Identities=24%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Q 026335           97 DANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEA  176 (240)
Q Consensus        97 ~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~  176 (240)
                      ..+....+.|......+...+...+..|+.|+.+|+.++..-..+.         ..-.--..-...|..|+++|.+-..
T Consensus       425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~---------~~~rei~~~~~~I~~L~~~L~e~~~  495 (652)
T COG2433         425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV---------RKDREIRARDRRIERLEKELEEKKK  495 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888888888888889999999988888775433111         1111122335567777777777777


Q ss_pred             HHHHHHHHHHHHH
Q 026335          177 ENTAGSRLLELRK  189 (240)
Q Consensus       177 e~~~~~~kl~~Rr  189 (240)
                      ..+.+..+|..=+
T Consensus       496 ~ve~L~~~l~~l~  508 (652)
T COG2433         496 RVEELERKLAELR  508 (652)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.32  E-value=44  Score=37.73  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          163 IITDLEKEIAALEAENTAGSRLLELR  188 (240)
Q Consensus       163 ~I~~Le~Ei~~L~~e~~~~~~kl~~R  188 (240)
                      .+..+...+.+|..........+..-
T Consensus       349 ei~~l~~~LeELee~Lee~eeeLeel  374 (1486)
T PRK04863        349 KIERYQADLEELEERLEEQNEVVEEA  374 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444433333333333333

>TIGR02977 phageshock_pspA phage shock protein A

Probab=83.29  E-value=31  Score=30.25  Aligned_cols=107  Identities=10%  Similarity=0.069  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 026335           70 DCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRK  149 (240)
Q Consensus        70 ~~~~l~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk  149 (240)
                      .+.++..++-.+|..+..++.+.-.....-.+++..|.......+.....+-..     ..=..|+.-...|..|...+.
T Consensus        28 ~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~-----G~EdLAr~Al~~k~~~~~~~~  102 (219)
T TIGR02977        28 MIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK-----GREDLARAALIEKQKAQELAE  102 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777777766677777777776666666555444321     122345555556666666655


Q ss_pred             HHhcC-----CChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          150 LIAVQ-----PPRSETQRIITDLEKEIAALEAENTAG  181 (240)
Q Consensus       150 ~I~~~-----PsR~et~~~I~~Le~Ei~~L~~e~~~~  181 (240)
                      .+...     ..-......|..|+..|..++.....+
T Consensus       103 ~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l  139 (219)
T TIGR02977       103 ALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL  139 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55421     233444555555555555555555433

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=82.73  E-value=51  Score=33.87  Aligned_cols=32  Identities=13%  Similarity=0.378  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhc
Q 026335          122 ADIEDLKKQLEESKIERQHK-EECEAIRKLIAV  153 (240)
Q Consensus       122 ~~Ie~LK~eL~~Ak~~R~nK-~EYD~LAk~I~~  153 (240)
                      .++.++..+|..|+..+... -.|+.+.+.+..
T Consensus       237 ~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~  269 (754)
T TIGR01005       237 QQLAELNTELSRARANRAAAEGTADSVKKALQN  269 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45666667777666655442 246666665543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK11637 AmiB activator; Provisional

Probab=82.69  E-value=47  Score=31.89  Aligned_cols=19  Identities=32%  Similarity=0.372  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 026335          114 NRQTLQAKADIEDLKKQLE  132 (240)
Q Consensus       114 e~~i~~~k~~Ie~LK~eL~  132 (240)
                      +.+|..+..+|..++.+|.
T Consensus       102 ~~ei~~l~~eI~~~q~~l~  120 (428)
T PRK11637        102 NKQIDELNASIAKLEQQQA  120 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=82.68  E-value=81  Score=34.63  Aligned_cols=106  Identities=21%  Similarity=0.341  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 026335          101 REKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEA--IRKLIAVQPPRSETQRIITDLEKEIAALEAEN  178 (240)
Q Consensus       101 rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~--LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~  178 (240)
                      .....|.+....+...+..+..++..++.+|..+...+.   .|+.  +...+...-...+....++.++..+..|....
T Consensus       299 ~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~---~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~  375 (1201)
T PF12128_consen  299 KLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKK---DYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKH  375 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344567777777777788888888888888877766554   5653  55555544444455566677777777777777


Q ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 026335          179 TAGSRLLELRKK----QFALLLHVVDELQNTMEEE  209 (240)
Q Consensus       179 ~~~~~kl~~Rrk----QF~~Ll~~i~~Lq~~l~de  209 (240)
                      ..+.++.+.++.    +|......++.-+..+.++
T Consensus       376 ~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~  410 (1201)
T PF12128_consen  376 QDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREE  410 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777765543    5555555555544444433

>PRK09343 prefoldin subunit beta; Provisional

Probab=82.32  E-value=24  Score=28.32  Aligned_cols=58  Identities=14%  Similarity=0.059  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          141 KEECEAIRKLIAVQP---PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHV  198 (240)
Q Consensus       141 K~EYD~LAk~I~~~P---sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~  198 (240)
                      -.-|-.+..+....|   .+.+....++-++.+|..|+.....+..++..-..+|..++..
T Consensus        54 ~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~  114 (121)
T PRK09343         54 TPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK  114 (121)
T ss_pred             chhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456777777777764   3556677778888888888888888888888777777776654

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=82.30  E-value=81  Score=34.40  Aligned_cols=90  Identities=21%  Similarity=0.290  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHH---------------HHHhHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHHHHHHHH
Q 026335          121 KADIEDLKKQLEESKI---------------ERQHKEECEAIRKLIAVQ---------PPRSETQRIITDLEKEIAALEA  176 (240)
Q Consensus       121 k~~Ie~LK~eL~~Ak~---------------~R~nK~EYD~LAk~I~~~---------PsR~et~~~I~~Le~Ei~~L~~  176 (240)
                      ..+|+.++..|...+.               .++-|..||.+-+.|..+         |-+.+-+..++.|+++++.++.
T Consensus       336 d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~  415 (1074)
T KOG0250|consen  336 DEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE  415 (1074)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666655555               677788999999999743         4556666666666666666655


Q ss_pred             HHHHHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHh
Q 026335          177 ENTAGSRLLEL-----RKKQ--FALLLHVVDELQNTMEEEQ  210 (240)
Q Consensus       177 e~~~~~~kl~~-----RrkQ--F~~Ll~~i~~Lq~~l~de~  210 (240)
                      ....+..+++.     +..+  -..+-.-+..|++.|+...
T Consensus       416 ~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~  456 (1074)
T KOG0250|consen  416 QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS  456 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555444432     1111  1124455556666666443

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=81.53  E-value=61  Score=32.92  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH
Q 026335           75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQ-HKEECEA  146 (240)
Q Consensus        75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~-nK~EYD~  146 (240)
                      ++.+..+|..+.....+... ......+++.+......+...+.....++..++.++..++..+. .+..|..
T Consensus       184 ~~~L~~dl~~~~~~~~~~~~-~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~  255 (650)
T TIGR03185       184 IDRLAGDLTNVLRRRKKSEL-PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS  255 (650)
T ss_pred             HHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566677666554444333 33445677777777777777888888888888888887765443 3333443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.9 bits (139), Expect = 7e-10
 Identities = 31/239 (12%), Positives = 72/239 (30%), Gaps = 87/239 (36%)

Query: 26  DDV----IIKH-----RLL--TR--------TTTTRGEPPLKKLQKKFTSFVLEIEKDED 66
            +V             ++L  TR        +  T     L       T        DE 
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-------PDEV 303

Query: 67  NNNDCEKLAKAFLQELSTFEIPLLKSK------AVIDANLRE---------KENFNELKE 111
                  L K    +    ++P           ++I  ++R+           N ++L  
Sbjct: 304 K----SLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 112 EINRQTLQAKADIEDLKKQLEESKIERQHKEECEAI--------RKLIAV---QPPRSET 160
            I       ++ +  L     E    R+  +   ++          L+++      +S+ 
Sbjct: 358 II-------ESSLNVL-----EPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDV 404

Query: 161 QRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLH-VVDELQNTMEEEQ---KNLIE 215
             ++  L K              L+E + K+  + +  +  EL+  +E E    +++++
Sbjct: 405 MVVVNKLHK------------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 31/182 (17%), Positives = 72/182 (39%), Gaps = 5/182 (2%)

Query: 48   KKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENFN 107
            K L+++ +     + ++E+   +  KL       +S  E+ L K +       + K    
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 108  ELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDL 167
                +++ Q  + +A I +LK QL      ++ +E   A+ +L      ++   + I +L
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLA-----KKEEELQAALARLEDETSQKNNALKKIREL 1121

Query: 168  EKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQKGGM 227
            E  I+ L+ +  +        +KQ   L   ++ L+  +E+       +  +        
Sbjct: 1122 ESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

Query: 228  ED 229
            +D
Sbjct: 1182 DD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 34/187 (18%), Positives = 74/187 (39%), Gaps = 2/187 (1%)

Query: 47   LKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENF 106
             +KLQ +  +   +I+K ED+    E       +E    E  +      +     + +N 
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 107  NELKEEINRQTLQAKADIEDLKKQLEES-KIERQHKEECEAIRKLIA-VQPPRSETQRII 164
             +LK +      + +  ++  +K  +E  KI+R+ + E   + + IA +Q   +E +  +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

Query: 165  TDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQK 224
               E+E+ A  A     +       K+   L   + +LQ  +E E+    +  +   +  
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150

Query: 225  GGMEDAS 231
              +E   
Sbjct: 1151 EELEALK 1157

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 89   LLKSKAVIDANLREKENFNELKEEINRQTLQAK----ADIEDLKKQLEESKIERQ--HKE 142
            L   K  ++  L E E   E +EE ++Q    K      + DL++QLEE +  RQ    E
Sbjct: 918  LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLE 977

Query: 143  ECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL 202
            +  A  K+  ++      +     L KE   LE   +  +  L   +++   L  + ++ 
Sbjct: 978  KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037

Query: 203  QNTMEEEQKNLIEEMRMAEE 222
            ++ + E +  L +E +  +E
Sbjct: 1038 ESMISELEVRLKKEEKSRQE 1057

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 30/177 (16%), Positives = 77/177 (43%), Gaps = 17/177 (9%)

Query: 47   LKKLQKKFTSFVLEIEKDEDNNNDCEKLAKAFLQELSTFEIPLLKSKAVIDANLREKENF 106
             KKL     +   +I + +   ++  K  K+ L++++  EI        + +++      
Sbjct: 919  YKKLHIGLEN---KIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975

Query: 107  NELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITD 166
             E  +    + L  + +I  L+K+L +++ E++  EE     K       + ET++++++
Sbjct: 976  EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEE--WADKY------KHETEQLVSE 1027

Query: 167  LEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQKNLIEEMRMAEEQ 223
            L+++   L+ E        EL ++       + + ++  + EE K L  ++     +
Sbjct: 1028 LKEQNTLLKTEKE------ELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/138 (15%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 101  REKENFNELKEEINRQTLQAKADIEDLKKQLEE-----SKIERQHKEECEAIRKLIA--- 152
            R  E + +L   +  + +Q +  I++  K+ +      + +E  +  E E +R  +    
Sbjct: 914  RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLR 973

Query: 153  -VQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTMEEEQK 211
              +         +  L++EIA L  E        +  ++      H  ++L + ++E+  
Sbjct: 974  MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033

Query: 212  NLIEEMRMAEEQKGGMED 229
             L  E      +      
Sbjct: 1034 LLKTEKEELNRRIHDQAK 1051

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.04
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	91.84
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	91.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.63
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	89.3
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	83.92
4aj5_K	123	Spindle and kinetochore-associated protein 2; cell	82.36

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.04  E-value=0.078  Score=46.25  Aligned_cols=122  Identities=15%  Similarity=0.094  Sum_probs=85.9

Q ss_pred             HHHHHHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 026335           75 AKAFLQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQ  154 (240)
Q Consensus        75 ~e~~l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~  154 (240)
                      ...+-.++..++-.+....--...-..++........+++..|..++..|...+..|..++    +-.+|++|-+.|...
T Consensus        27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----~~kE~~aL~kEie~~  102 (256)
T 3na7_A           27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----SERELRSLNIEEDIA  102 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----SSSHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHH
Confidence            4556677888888888888888888888889999999999999999999999999997655    777999999999854


Q ss_pred             C-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          155 P-PRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVD  200 (240)
Q Consensus       155 P-sR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~  200 (240)
                      - -....+..|..+...++.+......+...+...+..+..+-..+.
T Consensus       103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~  149 (256)
T 3na7_A          103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVE  149 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 233444455555555555555555555555555544444443333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=91.84  E-value=5.8  Score=34.22  Aligned_cols=126  Identities=12%  Similarity=0.056  Sum_probs=61.4

Q ss_pred             HHHHhccchhhhhHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 026335           79 LQELSTFEIPLLKSKAVIDANLREKENFNELKEEINRQT-------LQAKADIEDLKKQLEESKIERQHKEECEAIRKLI  151 (240)
Q Consensus        79 l~eLa~~E~s~~K~~~v~~aN~rE~e~Y~~~~~~Ie~~i-------~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I  151 (240)
                      |.+|..++..+.+..-....-..++..-......+...+       ..+..+|..+..++...+.-   -..|..--..+
T Consensus        10 L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~r---i~~~~~~l~~v   86 (256)
T 3na7_A           10 LIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAK---IASIQKKMSEI   86 (256)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHcc
Confidence            444444444444444333333444444444444444444       44444444444444333222   12222222223


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          152 AVQPPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME  207 (240)
Q Consensus       152 ~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~  207 (240)
                      ..+.......+.|+.++.++..++.+...+...++.-+.....+-..+..++..+.
T Consensus        87 ~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~  142 (256)
T 3na7_A           87 KSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL  142 (256)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556677777777777777777666666666555555555555555554443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=91.24  E-value=2.7  Score=33.66  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          102 EKENFNELKEEINRQTLQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIAALEAENTAG  181 (240)
Q Consensus       102 E~e~Y~~~~~~Ie~~i~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~~L~~e~~~~  181 (240)
                      |.-.-......++.++....++|..||.+|..++..      |+.             ..+.+++|++++..|+.+...+
T Consensus        69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k------~e~-------------~~~e~~~l~~~~~~l~~~~~~l  129 (138)
T 3hnw_A           69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIK------AES-------------SAKEIKELKSEINKYQKNIVKL  129 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------------HHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445566677777888999999988887653      443             4456677777777777777777


Q ss_pred             HHHHHHHH
Q 026335          182 SRLLELRK  189 (240)
Q Consensus       182 ~~kl~~Rr  189 (240)
                      +..+...+
T Consensus       130 e~~~~~~~  137 (138)
T 3hnw_A          130 ETELNDSK  137 (138)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhhc
Confidence            76666443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.63  E-value=9.8  Score=35.77  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          160 TQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDELQNTME  207 (240)
Q Consensus       160 t~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~Lq~~l~  207 (240)
                      ...++++.+++++.++.+...++..++..+++...+-.....+...|.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~  575 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVK  575 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            445556666666666777777777777777777666666665555544

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=89.30  E-value=14  Score=35.74  Aligned_cols=67  Identities=12%  Similarity=0.120  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 026335          118 LQAKADIEDLKKQLEESKIERQHKEECEAIRKLIAVQPPRSETQRIITDLEKEIA-ALEAENTAGSRLLE  186 (240)
Q Consensus       118 ~~~k~~Ie~LK~eL~~Ak~~R~nK~EYD~LAk~I~~~PsR~et~~~I~~Le~Ei~-~L~~e~~~~~~kl~  186 (240)
                      ..++..|++||.+|++=  .+.++.-|--.-.+...+..+..+....+..-.|+. +|+....-+..+++
T Consensus        60 rDltkrINELKnqLEdl--sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd  127 (562)
T 3ghg_A           60 QDFTNRINKLKNSLFEY--QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI  127 (562)
T ss_dssp             HHHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH--HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555544  222222333233333344555555555555555555 55555555555555

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=83.92  E-value=4.8  Score=27.06  Aligned_cols=46  Identities=37%  Similarity=0.424  Sum_probs=38.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026335          155 PPRSETQRIITDLEKEIAALEAENTAGSRLLELRKKQFALLLHVVDEL  202 (240)
Q Consensus       155 PsR~et~~~I~~Le~Ei~~L~~e~~~~~~kl~~RrkQF~~Ll~~i~~L  202 (240)
                      |+|.  ...+..|..++..|...+..+...|..-|.|...|=..|..|
T Consensus         4 ~~~~--~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L   49 (51)
T 3m91_A            4 PTRS--ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL   49 (51)
T ss_dssp             ---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666  677889999999999999999999999999998888877766

>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=82.36  E-value=13  Score=29.37  Aligned_cols=86  Identities=17%  Similarity=0.126  Sum_probs=53.6

Q ss_pred             HhHHHHHHHHHHHhcCCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 026335          139 QHKEECEAIRKLIAVQPPRS------ETQRIITDLEKEIAALEAENTAGSRLL----ELRKKQFALLLHVVDELQNTMEE  208 (240)
Q Consensus       139 ~nK~EYD~LAk~I~~~PsR~------et~~~I~~Le~Ei~~L~~e~~~~~~kl----~~RrkQF~~Ll~~i~~Lq~~l~d  208 (240)
                      ++|-+||    .++.||+-.      ...++|.+++.+...|...-..+...-    +.=|.-+...+..|+.||...+=
T Consensus        25 q~RLe~E----f~~~~Pd~A~e~NPv~Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~~td~  100 (123)
T 4aj5_K           25 QYRLEYE----IKTNHPDSASEKNPVTLLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQKQTDL  100 (123)
T ss_dssp             HHHHHHH----HHHCC-----CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHH----HHHhCCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            5788888    467788665      678888888888888887776555444    22344666678889999999886


Q ss_pred             HhhchHHHHHHH-HHhcCCcC
Q 026335          209 EQKNLIEEMRMA-EEQKGGME  228 (240)
Q Consensus       209 e~~~~~~e~~~~-~~~~~~~~  228 (240)
                      +-.+..++=..+ +.+++-|.
T Consensus       101 el~plteeE~~a~~~l~~~~~  121 (123)
T 4aj5_K          101 ELSPLTKEEKTAAEQFKFHMP  121 (123)
T ss_dssp             CCCCCHHHHHHHHHC------
T ss_pred             CCCCCChhHHHHHHHHHhhCC
Confidence            666666665544 43455554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00